BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J
[Candidatus Liberibacter asiaticus str. psy62]
         (199 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040539|gb|ACT57335.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 199

 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV
Sbjct: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE
Sbjct: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL
Sbjct: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180

Query: 181 ESNPDNSIVMVKVKSGKGI 199
           ESNPDNSIVMVKVKSGKGI
Sbjct: 181 ESNPDNSIVMVKVKSGKGI 199


>gi|315122716|ref|YP_004063205.1| NADH dehydrogenase subunit J [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496118|gb|ADR52717.1| NADH dehydrogenase subunit J [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 148

 Score =  233 bits (595), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 130/144 (90%)

Query: 56  MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           MITLVVYVGAVIV FLFIIMMLDID+E A+PR+ R FLG+FFIGILAAEL VCASN +VF
Sbjct: 1   MITLVVYVGAVIVLFLFIIMMLDIDVEEAKPRRNRPFLGAFFIGILAAELFVCASNLLVF 60

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             EGE+SRLVF+GNN E+IG+VLYT+Y YPLEISGFILLLSMIGAIVLMLRHR  IKRQ+
Sbjct: 61  GLEGEVSRLVFRGNNTEDIGEVLYTKYIYPLEISGFILLLSMIGAIVLMLRHRPGIKRQN 120

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           ISKQL+SNP NS+ +VKVKSG+GI
Sbjct: 121 ISKQLKSNPGNSVTVVKVKSGEGI 144


>gi|150396122|ref|YP_001326589.1| NADH dehydrogenase subunit J [Sinorhizobium medicae WSM419]
 gi|150027637|gb|ABR59754.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           medicae WSM419]
          Length = 222

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 108/213 (50%), Positives = 141/213 (66%), Gaps = 23/213 (10%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP+YSV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 19  MGLQALFFYLFAFIAVASAFMVIAAKNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 78

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVGAV V FLF++MMLDID   AE R    +   +G+    ILAAELIV A  +  FS 
Sbjct: 79  VYVGAVAVLFLFVVMMLDIDF--AELRAGVLEYAPIGALIGMILAAELIVVAGGW-AFSP 135

Query: 118 EGELSRLVFKG-----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           E      + KG            N   +G VLYT Y Y  +I+G +LL++MIGAIVL LR
Sbjct: 136 E------IAKGIAMPIPAPSERTNTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLR 189

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           HR++IKRQ I +Q+   P+ ++ +V VK G+GI
Sbjct: 190 HRQNIKRQSIPQQVARTPETAVEVVTVKPGQGI 222


>gi|222085586|ref|YP_002544116.1| NADH-ubiquinone oxidoreductase chain J protein [Agrobacterium
           radiobacter K84]
 gi|221723034|gb|ACM26190.1| NADH-ubiquinone oxidoreductase chain J protein [Agrobacterium
           radiobacter K84]
          Length = 204

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/207 (50%), Positives = 142/207 (68%), Gaps = 11/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFY+F+F+A+ S+F+V++ RNP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 1   MGLQALFFYIFAFVAVASAFMVISARNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G+    ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFSELRAGILEYAPIGALIGIILAAELIVVVGGSVI---SP 117

Query: 120 ELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           E++R V        +  N   +G VLYT Y Y  EI+G +LL++MIGAIVL LRHR  IK
Sbjct: 118 EIARSVAMPIPALTERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTHIK 177

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQ+IS+Q+   P  ++ +VKVK G+G+
Sbjct: 178 RQNISQQVARTPATAVEVVKVKPGQGV 204


>gi|222148284|ref|YP_002549241.1| NADH dehydrogenase subunit J [Agrobacterium vitis S4]
 gi|221735272|gb|ACM36235.1| NADH ubiquinone oxidoreductase chain J [Agrobacterium vitis S4]
          Length = 204

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/204 (49%), Positives = 137/204 (67%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++FFYLF+F+A+ S+F+V++ RNP++SV  LI  FVNAAGLF+L GAEF+AMI LV
Sbjct: 1   MGLQAIFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFVNAAGLFMLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     K G L +    I+AAELI       +  A  
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGASKYGPLAALIGAIVAAELIFVIGGSAISPAAK 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y +  +I+G +LL++MIGAIVL LRHR+ IKRQ+
Sbjct: 121 QAITMPIPALADRQNTAALGDVLYTNYVFFFQIAGLVLLVAMIGAIVLTLRHRQHIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I+ Q+   P  +I +VKVK G+GI
Sbjct: 181 IAHQVARGPATAIKVVKVKPGQGI 204


>gi|15965028|ref|NP_385381.1| NADH dehydrogenase subunit J [Sinorhizobium meliloti 1021]
 gi|307301100|ref|ZP_07580869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti BL225C]
 gi|307317834|ref|ZP_07597272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti AK83]
 gi|15074207|emb|CAC45854.1| Probable NADH dehydrogenase I chain J transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306896596|gb|EFN27344.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti AK83]
 gi|306904055|gb|EFN34641.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti BL225C]
          Length = 204

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/211 (50%), Positives = 138/211 (65%), Gaps = 19/211 (9%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  RNP+YSV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFIAVASAFMVIAARNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G+    ILAAELIV       FS E 
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGALIGLILAAELIVVVGG-SAFSPE- 118

Query: 120 ELSRLVFKG-----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + KG            N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR
Sbjct: 119 -----IAKGIAMPIPAPSERTNTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLRHR 173

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           ++IKRQ I +Q+   P+ ++ +V VK G+GI
Sbjct: 174 QNIKRQSIPQQVARTPETAVEVVTVKPGQGI 204


>gi|163759531|ref|ZP_02166616.1| NADH dehydrogenase subunit J [Hoeflea phototrophica DFL-43]
 gi|162283128|gb|EDQ33414.1| NADH dehydrogenase subunit J [Hoeflea phototrophica DFL-43]
          Length = 204

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 139/205 (67%), Gaps = 7/205 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFY+F+F+A+ S+F+V+  RNP++SV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 1   MGLQALFFYMFAFVAVASAFMVIAARNPVHSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G+    ILAAELI+       FS   
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTEMKSGALEYAPVGALVGIILAAELIIVLGG-NAFSPSA 119

Query: 120 ELS-----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             S       + + +N + +G VLYT Y +  +I+G +L ++MIGAIVL LRHR  IKRQ
Sbjct: 120 ATSGANPIPALSERSNTQALGDVLYTDYIFFFQIAGLVLFVAMIGAIVLTLRHREHIKRQ 179

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           DI++Q+   P+ ++ +VKVK G+GI
Sbjct: 180 DINQQVARTPETAVEVVKVKPGQGI 204


>gi|227821628|ref|YP_002825598.1| NADH dehydrogenase subunit J [Sinorhizobium fredii NGR234]
 gi|227340627|gb|ACP24845.1| NADH dehydrogenase subunit J [Sinorhizobium fredii NGR234]
          Length = 204

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 140/206 (67%), Gaps = 9/206 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q LFFYLF+F+A+ S+F+V+  +NP+YSV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 1   MGLQVLFFYLFAFIAVASAFMVIAAKNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELI--VCASNFMVF 115
           VYVGAV V FLF++MMLDID   AE R    +   +G+    ILAAELI  V  S F   
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDF--AELRAGVLEYAPVGALIGLILAAELIIVVGGSTFSPE 118

Query: 116 SAEGELSRL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
            A+G    +  V +  N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IKR
Sbjct: 119 IAKGIAMPIPAVTERTNTAALGDVLYTHYIYFFQIAGLVLLVAMIGAIVLTLRHRENIKR 178

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q I +Q+  +P+ ++ +V VK G+G+
Sbjct: 179 QSIPRQVARSPETAVEVVTVKPGQGL 204


>gi|15888608|ref|NP_354289.1| NADH dehydrogenase subunit J [Agrobacterium tumefaciens str. C58]
 gi|15156330|gb|AAK87074.1| NADH ubiquinone oxidoreductase chain J [Agrobacterium tumefaciens
           str. C58]
          Length = 204

 Score =  181 bits (458), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 135/206 (65%), Gaps = 9/206 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++FFY+F+F+A+ S+F+V+  +NP++SV  LI  F NAA LFLL GAEF+AMI LV
Sbjct: 1   MGLHAVFFYIFAFVAVASAFMVIASKNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVGAV V FLF++MMLD+D   AE R    +   +G+    ILAAELIV     M+   
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDF--AELRSGVLQYAPIGALIGVILAAELIVVVGGSMLNPI 118

Query: 118 EGELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             +   +         N   +G VLYT Y Y  +++G +LL++MIGAIVL LRHR DIKR
Sbjct: 119 AAKSITMPIPPAAERTNTAALGDVLYTNYVYFFQLAGLVLLVAMIGAIVLTLRHRTDIKR 178

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDIS Q+  +P  ++  VKVK G+GI
Sbjct: 179 QDISTQVGRDPKTAVTTVKVKPGQGI 204


>gi|209548873|ref|YP_002280790.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534629|gb|ACI54564.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 204

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 102/207 (49%), Positives = 139/207 (67%), Gaps = 11/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 117

Query: 120 ELSRLVF-------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           E+++ V        +  N   +G VLYT Y Y  EI+G +LL++MIGAIVL LRHR +IK
Sbjct: 118 EIAKSVAMPIPALSERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTNIK 177

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQ+I +Q+   P  ++ +V VK G+G+
Sbjct: 178 RQNIPRQVARTPATAVEVVSVKPGQGV 204


>gi|116251476|ref|YP_767314.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256124|emb|CAK07205.1| putative NADH-quinone oxidoreductase subunit 10 [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 204

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 101/207 (48%), Positives = 139/207 (67%), Gaps = 11/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGVILAAELIVVIGGSVI---SP 117

Query: 120 ELSRLVF-------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           E+++ V        +  N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IK
Sbjct: 118 EIAKTVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 177

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQ+I +Q+   P  ++ +V VK G+G+
Sbjct: 178 RQNIPRQVARTPATAVEVVSVKPGQGV 204


>gi|241204097|ref|YP_002975193.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857987|gb|ACS55654.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 204

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/207 (48%), Positives = 139/207 (67%), Gaps = 11/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGVILAAELIVVIGGSVI---SP 117

Query: 120 ELSRLVF-------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           E+++ V        +  N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IK
Sbjct: 118 EIAKSVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 177

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQ+I +Q+   P  ++ +V VK G+G+
Sbjct: 178 RQNIPRQVARTPATAVKVVSVKPGQGV 204


>gi|86357248|ref|YP_469140.1| NADH dehydrogenase subunit J [Rhizobium etli CFN 42]
 gi|86281350|gb|ABC90413.1| NADH-ubiquinone oxidoreductase chain J protein [Rhizobium etli CFN
           42]
          Length = 204

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/207 (48%), Positives = 140/207 (67%), Gaps = 11/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 117

Query: 120 ELSRLVF-------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           ++++ V        +  N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IK
Sbjct: 118 DIAKSVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 177

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQ+IS+Q+   P  ++ +V VK G+G+
Sbjct: 178 RQNISRQVARTPATAVEVVSVKPGQGV 204


>gi|218679751|ref|ZP_03527648.1| NADH dehydrogenase subunit J [Rhizobium etli CIAT 894]
          Length = 206

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/207 (49%), Positives = 138/207 (66%), Gaps = 11/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+AI S+F+V+  +NP++SV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 3   MGLQALFFYLFAFVAIASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLAGAEFLAMILLV 62

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 63  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 119

Query: 120 ELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           E+++ V        +  N   +G VLYT Y Y  EI+G +LL++MIGAIVL LRHR +IK
Sbjct: 120 EIAKSVAMPIPALTERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTNIK 179

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQ+I +Q+   P  ++ +V VK G+G+
Sbjct: 180 RQNIPRQVARTPATAVEVVSVKPGQGV 206


>gi|327188497|gb|EGE55711.1| NADH dehydrogenase subunit J [Rhizobium etli CNPAF512]
          Length = 251

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/207 (48%), Positives = 139/207 (67%), Gaps = 11/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 48  MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 107

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 108 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 164

Query: 120 ELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           E+++ V        +  N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IK
Sbjct: 165 EIAKTVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 224

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQ+I +Q+   P  ++ +V VK G+G+
Sbjct: 225 RQNIPRQVARTPATAVEVVSVKPGQGV 251


>gi|190891296|ref|YP_001977838.1| NADH-ubiquinone oxidoreductase, chain J [Rhizobium etli CIAT 652]
 gi|190696575|gb|ACE90660.1| NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli
           CIAT 652]
          Length = 204

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/207 (48%), Positives = 138/207 (66%), Gaps = 11/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+AI S+F+V+  +NP++SV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFVAIASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLAGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 117

Query: 120 ELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           E+++ V        +  N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IK
Sbjct: 118 EIAKTVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 177

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQ+I +Q+   P  ++ +V VK G+G+
Sbjct: 178 RQNIPRQVARTPATAVEVVSVKPGQGV 204


>gi|218462498|ref|ZP_03502589.1| NADH dehydrogenase subunit J [Rhizobium etli Kim 5]
          Length = 230

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/207 (48%), Positives = 139/207 (67%), Gaps = 11/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 27  MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 86

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 87  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 143

Query: 120 ELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           E+++ V        +  N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IK
Sbjct: 144 EIAKSVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 203

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQ+I +Q+   P  ++ +V VK G+G+
Sbjct: 204 RQNIPRQVARTPATAVEVVTVKPGQGV 230


>gi|325292643|ref|YP_004278507.1| NADH dehydrogenase I chain J [Agrobacterium sp. H13-3]
 gi|325060496|gb|ADY64187.1| NADH dehydrogenase I chain J [Agrobacterium sp. H13-3]
          Length = 204

 Score =  177 bits (449), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 98/206 (47%), Positives = 135/206 (65%), Gaps = 9/206 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++FFY+F+F+A+ S+F+V+  +NP++SV  LI  F NAA LFLL GAEF+AMI LV
Sbjct: 1   MGLHAVFFYIFAFVAVASAFMVIASKNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVGAV V FLF++MMLD+D   AE R    +   +G+    ILAAELIV     ++   
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDF--AELRSGVLQYAPIGALIGIILAAELIVVVGGSVLNPQ 118

Query: 118 EGELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             +   +         N   +G VLYT Y Y  +++G +LL++MIGAIVL LRHR DIKR
Sbjct: 119 AAKSITMPIPSPAVRTNTAALGDVLYTNYVYFFQLAGLVLLVAMIGAIVLTLRHRTDIKR 178

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q+IS Q+  +P  ++  VKVK G+GI
Sbjct: 179 QNISTQVGRDPKTAVTTVKVKPGQGI 204


>gi|260462241|ref|ZP_05810485.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium
           opportunistum WSM2075]
 gi|259032101|gb|EEW33368.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium
           opportunistum WSM2075]
          Length = 206

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/205 (47%), Positives = 138/205 (67%), Gaps = 11/205 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++ FFYLF+F+A+ S+F+V++ RNP++SV  LI  F NAAGLF+L GAEF+AMI LVVY
Sbjct: 5   LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV+V FLF++MMLD+D  E+ E   +   +G+    ILAAELIV       ++   +L
Sbjct: 65  VGAVMVLFLFVVMMLDVDFAEMKEGALQYAPIGALVGLILAAELIVVLGG---YTFAPQL 121

Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +  V K        +N   +G +LYT Y Y  +ISG ILL++MIGAIVL LRH+  +KRQ
Sbjct: 122 ASTVAKPIPDLAARSNTAALGDILYTDYLYYFQISGLILLVAMIGAIVLTLRHKEGVKRQ 181

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
            I+ Q+   P   + + KVKSG+G+
Sbjct: 182 SIAAQVGRTPATGMEIRKVKSGEGV 206


>gi|13471397|ref|NP_102963.1| NADH dehydrogenase subunit J [Mesorhizobium loti MAFF303099]
 gi|14022139|dbj|BAB48749.1| NADH-ubiquinone dehydrogenase chain 10 [Mesorhizobium loti
           MAFF303099]
          Length = 206

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/203 (46%), Positives = 137/203 (67%), Gaps = 7/203 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++ FFYLF+F+A+ S+F+V++ RNP++SV  LI  F NAAGLF+L GAEF+AMI LVVY
Sbjct: 5   LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFS 116
           VGAV+V FLF++MMLD+D  E+ E   +   +G+    ILAAELI+    +     +  +
Sbjct: 65  VGAVMVLFLFVVMMLDVDFAEMKEGALQYAPIGALVGLILAAELIIVLGGYTFAPKLAAT 124

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
               +  L  + +N   +G +LYT Y Y  +ISG ILL++MIGAIVL LRH+  +KRQ I
Sbjct: 125 VSKPIPDLATR-SNTAALGDILYTDYLYYFQISGLILLVAMIGAIVLTLRHKEGVKRQSI 183

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
           + Q+   P   + + KVKSG+G+
Sbjct: 184 AAQVGRTPATGMEIRKVKSGEGV 206


>gi|295689615|ref|YP_003593308.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Caulobacter
           segnis ATCC 21756]
 gi|295431518|gb|ADG10690.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Caulobacter
           segnis ATCC 21756]
          Length = 205

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/207 (47%), Positives = 137/207 (66%), Gaps = 12/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYL +F+ I +  LVV+ RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +V
Sbjct: 1   MALQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMV- 114
           VYVGAV V FLF++MMLD+D   AE R+  GF     +G    GIL  E+I  A+     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDF--AELRQ--GFAQYLPIGGLVGGILTLEMIFVAATVATN 116

Query: 115 -FSAEGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
             +A+  L      G  N E IG+VLYT Y +  +++G +LL++MIGAIVL LRH+  +K
Sbjct: 117 GAAAKNGLPNASPGGVPNTEAIGRVLYTDYIFFFQLAGLVLLVAMIGAIVLTLRHKPGVK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQDI KQ+   P   + +V++K G+GI
Sbjct: 177 RQDIGKQVARTPKTGMTLVQIKPGEGI 203


>gi|319782991|ref|YP_004142467.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317168879|gb|ADV12417.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 206

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/205 (46%), Positives = 136/205 (66%), Gaps = 11/205 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++ FFYLF+F+A+ S+F+V++ RNP++SV  LI  F NAAGLF+L GAEF+AMI LVVY
Sbjct: 5   LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV+V FLF++MMLD+D  E+     +   +G+    ILAAELIV       ++   +L
Sbjct: 65  VGAVMVLFLFVVMMLDVDFAELKSGALQYAPIGALVGLILAAELIVVLGG---YTFAPQL 121

Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +  V K         N   +G +LYT Y Y  +ISG +LL++MIGAIVL LRH+  +KRQ
Sbjct: 122 ASTVSKPIPDLATRTNTAALGDILYTDYLYYFQISGLVLLVAMIGAIVLTLRHKPGVKRQ 181

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
            I+ Q+   P   + + KVK+G+G+
Sbjct: 182 SIAAQVGRTPATGMEIRKVKTGEGL 206


>gi|312116311|ref|YP_004013907.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311221440|gb|ADP72808.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 200

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 135/201 (67%), Gaps = 4/201 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +   FFYLFS + I S  +V++ RNP++SV  LI AF+NAAGLF+LLGAEF+AMI ++
Sbjct: 1   MTIAGYFFYLFSIVLISSGAMVISARNPVHSVLFLILAFLNAAGLFVLLGAEFLAMILVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++M LDID         R       +G +L  ELI+    F +  A G
Sbjct: 61  VYVGAVAVLFLFVVMTLDIDFGQLRKGMSRYLPIGILVGLVLVTELILVVGGFTM--APG 118

Query: 120 ELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +  +   + +N E IG+VLYT Y Y  ++SG +LL++MIGAIVL LRHR D KRQ++++
Sbjct: 119 AIRPVASAQVSNTEAIGRVLYTDYLYFFQLSGLVLLVAMIGAIVLTLRHRPDSKRQNVAR 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+    +++I +VKV++GKGI
Sbjct: 179 QVGRKREDAIEVVKVETGKGI 199


>gi|110633385|ref|YP_673593.1| NADH dehydrogenase subunit J [Mesorhizobium sp. BNC1]
 gi|110284369|gb|ABG62428.1| NADH dehydrogenase subunit J [Chelativorans sp. BNC1]
          Length = 206

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 139/203 (68%), Gaps = 7/203 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++++FFYLF+F+ + ++F+V++ RNP++SV  LI  F NAA LFLL GAEF+AMI L+VY
Sbjct: 5   LEAIFFYLFAFIGVAAAFMVISARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLIVY 64

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--- 118
           VGAV V FLF++MMLD+D  E+ +   +   +G+    ILA ELIV    +  F+ E   
Sbjct: 65  VGAVAVLFLFVVMMLDVDFAELKQGALQYAPVGAIVGIILAVELIVVLGGY-AFTPEIAA 123

Query: 119 --GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
              + +  + + +N   +G +LYT Y Y  +++G ILL++M+GAIVL LRH+ +++RQ+I
Sbjct: 124 EIAQPAPAIAERHNTAALGDILYTNYFYFFQVAGLILLVAMVGAIVLTLRHKPNVRRQNI 183

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
           + Q+   P  +I + KV++G+GI
Sbjct: 184 AAQVARTPATAIEIRKVETGEGI 206


>gi|146341104|ref|YP_001206152.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. ORS278]
 gi|146193910|emb|CAL77927.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           (NDH-1, chain J) [Bradyrhizobium sp. ORS278]
          Length = 212

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 136/206 (66%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +V+  +NP++SV  LI AFVNA+GLF+L+GAEF+AMI +V
Sbjct: 1   MILPALFFYLFAAVCVASAVMVIVSKNPVHSVLYLILAFVNASGLFVLMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFMVF 115
           VYVGAV V FLF+IMMLD+D        + GFL    IG++       EL++  S +++ 
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFT----ELREGFLQYMPIGLVIGGIFLFELLLTVSYWVIN 116

Query: 116 SAEGELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
            +  +        N  N E +G VLYT+Y +  ++SG ILL++MIGAIVL LRH+  +KR
Sbjct: 117 PSTPKAITAAIPTNVTNTEALGLVLYTKYVHYFQLSGMILLVAMIGAIVLTLRHKASVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDI+ Q    PD ++ + KV  G+G+
Sbjct: 177 QDINVQNARTPDMAMAVRKVAVGQGL 202


>gi|167646785|ref|YP_001684448.1| NADH dehydrogenase subunit J [Caulobacter sp. K31]
 gi|167349215|gb|ABZ71950.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Caulobacter
           sp. K31]
          Length = 203

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 130/205 (63%), Gaps = 12/205 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ++ FYL +   +++  LVV+ RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +VVY
Sbjct: 1   MQAIAFYLLAVATVVAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA 117
           VGAV V FLF++MMLD+D        ++GF     +G    G L  E+I  A+       
Sbjct: 61  VGAVAVLFLFVVMMLDVDFT----ELRQGFAQYLPIGGLVAGFLTLEMIFIAATVATNGK 116

Query: 118 EG--ELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            G   L      G  N E IG+VLYT Y +  +++G +LL++MIGAIVL LRH+  +KRQ
Sbjct: 117 AGLNALPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKAGVKRQ 176

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           DI KQ+   P   + +V++K G+GI
Sbjct: 177 DIGKQIARTPKTGMEIVQIKPGEGI 201


>gi|307942128|ref|ZP_07657479.1| NADH-quinone oxidoreductase subunit j [Roseibium sp. TrichSKD4]
 gi|307774414|gb|EFO33624.1| NADH-quinone oxidoreductase subunit j [Roseibium sp. TrichSKD4]
          Length = 204

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 94/208 (45%), Positives = 142/208 (68%), Gaps = 13/208 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + + FFYLF+ + + S+F+V+  RNP++SV  LI AFVN+AGLF+LLGAE++AM+ +V
Sbjct: 1   MFLNAFFFYLFAGVTVASAFMVIAARNPVHSVLFLILAFVNSAGLFVLLGAEYLAMLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFM-- 113
           VYVGAV V FLF++MM+D+D   AE R+  GFL     G L       EL++  S ++  
Sbjct: 61  VYVGAVAVLFLFVVMMMDVDF--AELRQ--GFLQYLPAGALVGLVLLIELLMGVSAWILA 116

Query: 114 --VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
             +     E +  + + +N+E IG+VLYT+Y Y  ++SG +LL++MIGAIVL LRH+   
Sbjct: 117 PGLIGQGSEPTPALNEVSNIEAIGQVLYTKYIYFFQVSGLVLLVAMIGAIVLTLRHKPYA 176

Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199
           KRQDI+ Q+    ++++ + KV++GKGI
Sbjct: 177 KRQDIATQVGRRREDAVEVRKVETGKGI 204


>gi|329850719|ref|ZP_08265564.1| NADH-quinone oxidoreductase subunit J [Asticcacaulis biprosthecum
           C19]
 gi|328841034|gb|EGF90605.1| NADH-quinone oxidoreductase subunit J [Asticcacaulis biprosthecum
           C19]
          Length = 204

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 132/206 (64%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FYL + + +++  LVVT RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +V
Sbjct: 1   MTLMAIAFYLMAAVTLVAGLLVVTARNPVHSVLYLILAFFSAAGLFVLLGAEFLAMLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL-----GSFFIGILAAELIVCASNFMVF 115
           VYVGAV V FLF++MMLD+D      + ++GF      G+   GILA ELI         
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDF----IKLRQGFANYLAPGAVVAGILAFELIFVGWAVAGR 116

Query: 116 SAEGELSRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
            A    +    +    N++ IG  LYT YAY  E +GF+LL++MIGAIVL LRHR  +KR
Sbjct: 117 GAAAGNAPQAARPDATNIQTIGLELYTTYAYVFEAAGFVLLVAMIGAIVLTLRHRTYVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDI KQ+     +++ +V  K+G+GI
Sbjct: 177 QDIYKQVTRRRKDAVAVVPAKTGEGI 202


>gi|299135023|ref|ZP_07028214.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Afipia sp.
           1NLS2]
 gi|298590000|gb|EFI50204.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Afipia sp.
           1NLS2]
          Length = 212

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 138/206 (66%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +VVT RNP++SV  LI  FVNAAGLF+LL AEF+AMI +V
Sbjct: 1   MILPALFFYLFAGVCVASAVMVVTARNPVHSVLFLILTFVNAAGLFVLLNAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVF 115
           VYVGAV V FLF+IMMLD+D   AE R+  GF+    +G+L      AEL++ A  +++ 
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDF--AELRQ--GFIEYLPVGLLIGAIFLAELLLVAGGWVLS 116

Query: 116 S--AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              A    + +     N E IG VLYT+Y +  +++G +LL++MIGAIVL LRH+  +KR
Sbjct: 117 PNVAHSITAPIPATVTNTEAIGLVLYTRYIHYFQLAGLVLLVAMIGAIVLTLRHKPSVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q+IS Q       ++ + +V SG+G+
Sbjct: 177 QNISAQNARGKATAMAVRQVPSGQGL 202


>gi|254469512|ref|ZP_05082917.1| NADH-quinone oxidoreductase chain j [Pseudovibrio sp. JE062]
 gi|211961347|gb|EEA96542.1| NADH-quinone oxidoreductase chain j [Pseudovibrio sp. JE062]
          Length = 204

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/208 (48%), Positives = 148/208 (71%), Gaps = 13/208 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+Q+LFFYLF+ +A+ S+F+V+  RNP++SV  LI  F NAAGLF+L+GAE++AM+ +V
Sbjct: 1   MVLQALFFYLFAALAVASAFMVIASRNPVHSVLFLILCFFNAAGLFVLIGAEYLAMLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MMLD+D   AE R+  GFL    IG     IL  EL++  S + + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDVDF--AEMRQ--GFLQYLPIGALIGVILLVELLMVVSGWYIA 116

Query: 116 S---AEGEL-SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                EG   +  V +  N+  IG++LYT+Y Y  +++G +LL++MIGAIVL LRH+  +
Sbjct: 117 PGMLGEGSAPTPPVEQTQNIAAIGELLYTRYIYWFQVAGLVLLVAMIGAIVLTLRHKPGV 176

Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199
           +RQ+IS+Q+   P+ +I +VKV+SGKG+
Sbjct: 177 RRQNISEQVARRPETAIEVVKVESGKGL 204


>gi|114771828|ref|ZP_01449221.1| NADH dehydrogenase subunit J [alpha proteobacterium HTCC2255]
 gi|114547644|gb|EAU50535.1| NADH dehydrogenase subunit J [alpha proteobacterium HTCC2255]
          Length = 204

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 5/197 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS  A++S+  VV  RNP++SV  LI  F +AA +F+L+GAEFVAM+  +VYVGAV 
Sbjct: 8   FYLFSITAVMSALFVVVARNPVHSVLWLILTFFSAASMFVLMGAEFVAMLLAIVYVGAVA 67

Query: 68  VFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL----S 122
           V FLF++MMLD+D +E+    +K   +GS    +L  EL +  S++ V    G L    +
Sbjct: 68  VLFLFVVMMLDVDFVELKSGMQKYFLIGSSIGLVLLMELGLVISHWKVAPEAGSLLQSPT 127

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
             +   +N   +G++LY+ Y Y  +I+G ILL +MIGAIVL LRHR D+KRQ +  Q++ 
Sbjct: 128 PPIDTTHNTLALGQILYSDYIYLFQIAGLILLTAMIGAIVLTLRHRTDVKRQSVVDQMQR 187

Query: 183 NPDNSIVMVKVKSGKGI 199
           +P +++ ++ VK G+G+
Sbjct: 188 DPADAMEVITVKPGQGL 204


>gi|209885061|ref|YP_002288918.1| j subunit of NADH dehydrogenase i [Oligotropha carboxidovorans OM5]
 gi|209873257|gb|ACI93053.1| j subunit of NADH dehydrogenase i [Oligotropha carboxidovorans OM5]
          Length = 212

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 134/206 (65%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +VVT RNP++SV  LI  FVNAAGLF+LL AEF+AMI +V
Sbjct: 1   MILPALFFYLFAGVCVASAVMVVTARNPVHSVLFLILTFVNAAGLFVLLNAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFMVF 115
           VYVGAV V FLF+IMMLD+D        ++GF+    +G+L       EL++    +++ 
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFAA----LRQGFIEYLPVGLLVGAIFLVELLLVVGGWVLS 116

Query: 116 S--AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              A    + +     N E IG VLYT+Y +  +++G +LL++MIGAIVL LRH+ ++KR
Sbjct: 117 PDVAHSITAPIPTTVTNTEAIGLVLYTRYIHYFQLAGLVLLVAMIGAIVLTLRHKPNVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q+IS Q       +I M KV  G+G+
Sbjct: 177 QNISVQNARGKATAIAMRKVAPGQGL 202


>gi|27380019|ref|NP_771548.1| NADH dehydrogenase subunit J [Bradyrhizobium japonicum USDA 110]
 gi|27353173|dbj|BAC50173.1| NADH ubiquinone oxidoreductase chain J [Bradyrhizobium japonicum
           USDA 110]
          Length = 212

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 134/202 (66%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +V+  RNP++SV  LI AFVNA+GLF+L+GAEF+ M+ +V
Sbjct: 1   MILPALFFYLFAGVCVASAVMVIVSRNPVHSVLYLILAFVNASGLFVLMGAEFLGMMLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF+IMMLD+D +E+ E   +   +G    GI   EL++    +++     
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFLELREGFIEYLPVGLVIGGIFLFELLLTVGFWVINPGVS 120

Query: 120 ELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +        N  N E +G VLYT+Y Y  +++G +LL++MIGAIVL LRH+  +KRQDI+
Sbjct: 121 KTITAAIPTNVSNTEALGLVLYTKYVYYFQLAGMVLLVAMIGAIVLTLRHKVSVKRQDIN 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q    PD ++ M KV  G+G+
Sbjct: 181 VQNARTPDMAMAMRKVAPGQGL 202


>gi|75676069|ref|YP_318490.1| NADH dehydrogenase subunit J [Nitrobacter winogradskyi Nb-255]
 gi|74420939|gb|ABA05138.1| NADH dehydrogenase subunit J [Nitrobacter winogradskyi Nb-255]
          Length = 212

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 141/206 (68%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +V++ RNP++SV  LI AFVNAAGLF+L+GAEF+AMI +V
Sbjct: 1   MILPALFFYLFAGVCVASAAMVISSRNPVHSVLFLILAFVNAAGLFILMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAE 118
           VYVGAV V FLF+IMMLD+D   AE R+  GFL     G++ A + +     +V  ++  
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDF--AELRE--GFLEYLPFGLVIAAIFLLELLLVVGGWTLN 116

Query: 119 GELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             +++ +        +N E +G VLYT+Y +  +++G +LL++MIGAIVL LRHR  +KR
Sbjct: 117 PAVTKSITAAIPGDVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHRAGVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDI+ Q    P+ ++ + +V SG+G+
Sbjct: 177 QDINVQNARTPEMAMSVRQVASGQGL 202


>gi|115524539|ref|YP_781450.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisA53]
 gi|115518486|gb|ABJ06470.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53]
          Length = 212

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 131/206 (63%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  LFFYL+S   + S+ +V+  RNP+++V  LI  F N+AGLF+LLGAEF+AMI ++
Sbjct: 1   MTLPDLFFYLYSAGCVASAVMVIVSRNPVHAVLFLILVFANSAGLFVLLGAEFLAMILVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115
           VYVGAV V FLF+IMMLDID +    + + GFL    +G+L   + +     +       
Sbjct: 61  VYVGAVAVLFLFVIMMLDIDFK----QLREGFLSHLPVGLLVGAVFLAELLLLAAGWAIR 116

Query: 116 -SAEGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
            +    ++  +  G  N E +G VLYT Y +  +I+G +LL+SMIGAIVL +RHR  +KR
Sbjct: 117 PTVTKAITSPIPSGVGNTEALGLVLYTTYIHYFQIAGMVLLVSMIGAIVLTMRHRSSVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDI+ Q   +P+ ++ + KV SG+G+
Sbjct: 177 QDIAAQNARSPETAMAVRKVASGQGL 202


>gi|90417834|ref|ZP_01225746.1| NADH dehydrogenase I, J subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337506|gb|EAS51157.1| NADH dehydrogenase I, J subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 205

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 135/207 (65%), Gaps = 15/207 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++FFYLF+ +A+ S  +VV  RNP++SV  LI  FV AAGLFLL GAEF+A+I +VVY
Sbjct: 4   LQAVFFYLFALVAVGSGLMVVLARNPVHSVLFLILTFVAAAGLFLLAGAEFLALILIVVY 63

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCAS-NF---- 112
           VGAV + FLF++MMLDID      R KR  L    +G     +L AEL++ A+ N+    
Sbjct: 64  VGAVAILFLFVVMMLDIDFG----RVKRDTLKYAPVGVIIGVVLLAELVIAATGNYYDPQ 119

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           M  +    +  L    +N+E +G VLYT+Y    +++G IL ++M+GAIVL LRH+  +K
Sbjct: 120 MAVATSMPIPPLEVV-SNIEALGSVLYTRYILFFQLAGLILFVAMVGAIVLTLRHKEGLK 178

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQ I +Q+   P  ++ + KV+SGKGI
Sbjct: 179 RQSIPQQVGRTPATAVEIRKVESGKGI 205


>gi|300023444|ref|YP_003756055.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525265|gb|ADJ23734.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 216

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 134/202 (66%), Gaps = 6/202 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++ FFYLF+ +A+ S  +V+  RNP+++V  L+ AF NAAGLFLLLGAEF+AM+ ++VYV
Sbjct: 3   EAGFFYLFAVLAVASGAMVILARNPVHAVLFLVLAFFNAAGLFLLLGAEFLAMLLVIVYV 62

Query: 64  GAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS--NFMVFSAEGE 120
           GAV V FLF++MMLD+D  E+     K   +G+   G++ AEL+   S   F +      
Sbjct: 63  GAVSVIFLFVVMMLDVDFAELKAGFIKNAKIGAIVGGVVLAELVALFSFRGFSIAPTVNV 122

Query: 121 LSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            + +   G+ + N   +G++LYT+Y Y  + SG ILL++MIGAIVL L+HR ++KRQ I+
Sbjct: 123 AAPMPAAGSTLTNTAALGQILYTKYVYLFQASGMILLVAMIGAIVLTLKHRTNVKRQSIA 182

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ +VKV +G  +
Sbjct: 183 AQVSRDPAKTLEVVKVPTGGSV 204


>gi|304391411|ref|ZP_07373353.1| NADH-quinone oxidoreductase chain 10 [Ahrensia sp. R2A130]
 gi|303295640|gb|EFL89998.1| NADH-quinone oxidoreductase chain 10 [Ahrensia sp. R2A130]
          Length = 203

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/211 (45%), Positives = 137/211 (64%), Gaps = 20/211 (9%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +LFFYLF+ + + S+F+V+  RNP++SV  LI  F NAAGLF+L GAEF+A+I +V
Sbjct: 1   MGVAALFFYLFATICVASAFMVIASRNPVHSVLFLILCFFNAAGLFMLTGAEFLALILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVF 115
           VYVGAV V FLF++MMLD+D   AE R   GFL    IG     ILA ELI+        
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDF--AELRD--GFLQYMPIGAVIGIILAVELILVLGG---L 113

Query: 116 SAEGELSRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           S + E++    +        +N++ IG +LYT+Y +  ++ G ILL++MIGAIVL L HR
Sbjct: 114 SFDPEIAARAVQPIPDLAEVSNIQAIGDLLYTKYIFFFQLCGLILLVAMIGAIVLTLSHR 173

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
            D++RQ+I+ Q+  +P N + +  VK G+GI
Sbjct: 174 PDVRRQNIADQVARDP-NDVELRSVKPGEGI 203


>gi|90423914|ref|YP_532284.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisB18]
 gi|90105928|gb|ABD87965.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
          Length = 212

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 131/206 (63%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  LFFYL+S + + ++ +V+  RNP+++V  LI  FVNAAGLF+L+GAEF+AMI ++
Sbjct: 1   MTLPDLFFYLYSGVCVAAATMVIVSRNPVHAVLFLILVFVNAAGLFMLMGAEFLAMILII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL--IVCASNFMVFSAE 118
           VYVGAV V FLF+IMMLDID +    + + GF      G+L   +           +   
Sbjct: 61  VYVGAVAVLFLFVIMMLDIDFK----QLREGFFEYLPFGLLIGVIFLAELLLLAGGWVIH 116

Query: 119 GELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             L++ +        +N E +G VLYT+Y +  +ISG ILL++MIGAIVL +RHR  +KR
Sbjct: 117 PTLTKAITAPIPDNISNTEALGMVLYTRYIHYFQISGLILLVAMIGAIVLTMRHRVSVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q+IS Q   NP+ ++ + KV SG+G+
Sbjct: 177 QNISAQNARNPETAMDVRKVASGQGL 202


>gi|85717020|ref|ZP_01047982.1| NADH dehydrogenase subunit J [Nitrobacter sp. Nb-311A]
 gi|85696144|gb|EAQ34040.1| NADH dehydrogenase subunit J [Nitrobacter sp. Nb-311A]
          Length = 211

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/200 (45%), Positives = 136/200 (68%), Gaps = 11/200 (5%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFYLF+ + + S+ +V++ RNP++SV  LI AFVNAAGLF+LLGAEF+AMI +VVYVGAV
Sbjct: 6   FFYLFAGVCVASAVMVISSRNPVHSVLFLILAFVNAAGLFILLGAEFLAMILIVVYVGAV 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAEGELSRL 124
            V FLF+IMMLD+D   AE R+  GFL     G++ A + +     +V  ++    +++ 
Sbjct: 66  AVLFLFVIMMLDVDF--AELRE--GFLEYLPFGLVIAAIFLLELLLVVGGWTLNPTVTKS 121

Query: 125 VFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           +        +N E +G VLYT+Y +  +++G +LL++MIGAIVL LRHR  +KRQDI+ Q
Sbjct: 122 ITAAIPGDVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHRVSVKRQDINVQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
               P+ ++ + +V SG+G+
Sbjct: 182 NARTPEMAMSVRQVASGQGL 201


>gi|58696815|ref|ZP_00372343.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225630632|ref|YP_002727423.1| NADH dehydrogenase I, J subunit [Wolbachia sp. wRi]
 gi|58536985|gb|EAL60140.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592613|gb|ACN95632.1| NADH dehydrogenase I, J subunit [Wolbachia sp. wRi]
          Length = 195

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/195 (44%), Positives = 135/195 (69%), Gaps = 8/195 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFY FS ++I+S+  V++VRNP+++V  LIF FVN+A LF+LLGAEF+AM+ L+VY+GAV
Sbjct: 4   FFYFFSILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVLIVYIGAV 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV- 125
            V FLF++MMLDID      R ++GF   F +G +   +     +F++ S+   +S ++ 
Sbjct: 64  AVLFLFVVMMLDID----YIRLRQGFAKHFTLGAILCVVFFLVISFVIRSSTLNISNVIN 119

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLESNP 184
           +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+ ++  IKRQ++ KQL  + 
Sbjct: 120 YNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGIKRQNVLKQLTQS- 178

Query: 185 DNSIVMVKVKSGKGI 199
            +S+ +VK K GKG+
Sbjct: 179 -SSVKLVKAKFGKGV 192


>gi|182679343|ref|YP_001833489.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182635226|gb|ACB96000.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 202

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 134/206 (65%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+ FF LFS + I+S+ +V+  RNP++SV  LI AF NAAGLF++LGAEF+AMI +V
Sbjct: 1   MDVQAFFFTLFSTVMIVSAIMVIAARNPVHSVLFLILAFCNAAGLFVMLGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---A 117
           VYVGA+ V FLF++MMLD+D        K+GFL    +G L   +++     ++ S    
Sbjct: 61  VYVGAIAVLFLFVVMMLDVDFT----EFKQGFLQYLPVGALIGAVVLVELFLVLGSWVAG 116

Query: 118 EGELSRL---VFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
            G ++ +   V  G +N   +G+VLYTQY Y  + +  +LL +MIGAIVL LRH+  +KR
Sbjct: 117 SGSVTAIATPVPPGMSNTMALGRVLYTQYLYLFQAAAMVLLTAMIGAIVLTLRHKVGVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDI+ Q    P ++I + KV SG+G+
Sbjct: 177 QDIAAQNARTPVDAIEIRKVASGQGL 202


>gi|319405689|emb|CBI79312.1| NADH dehydrogenase I chain J [Bartonella sp. AR 15-3]
          Length = 206

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/198 (46%), Positives = 129/198 (65%), Gaps = 5/198 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFY+F+F+ +IS+ +VVT RNP++SV  LI  F NAA LFLL GAEF+ +I LVVYVGAV
Sbjct: 9   FFYIFAFIMLISAVIVVTARNPVHSVLFLILVFFNAAVLFLLAGAEFLGLILLVVYVGAV 68

Query: 67  IVFFLFIIMMLDIDI-EVAEPRKKRGFLGSF--FIGILAAELIVCASNFMVFSAEGELSR 123
            V FLF++MMLD+D  E+     K   +GSF   I  +    +  ++ F + S       
Sbjct: 69  AVLFLFVVMMLDVDFAELKSGALKYAPIGSFIGIIIAIELIFVFISNGFSLVSGVHITQP 128

Query: 124 L--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +  + +  N + +G +LYT Y +  +ISG ILL++MIGAIVL LRHR  IKRQ I+ Q+ 
Sbjct: 129 MPDLAQRTNTQALGDILYTDYVFYFQISGIILLVAMIGAIVLTLRHRSGIKRQSIAAQVA 188

Query: 182 SNPDNSIVMVKVKSGKGI 199
              +N+I + KV+SGKGI
Sbjct: 189 RTAENAIEIKKVESGKGI 206


>gi|149914593|ref|ZP_01903123.1| NADH dehydrogenase subunit J [Roseobacter sp. AzwK-3b]
 gi|149811386|gb|EDM71221.1| NADH dehydrogenase subunit J [Roseobacter sp. AzwK-3b]
          Length = 202

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 126/203 (62%), Gaps = 5/203 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  + FYLF+  A+      V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++
Sbjct: 1   MSMTVMSFYLFAISALAGGLFTVISRNPVHSVLWLILAFISSAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D    +    R    +  IG IL  +  +   N+ + S   
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAALKAEMARYMPLALLIGVILLMQFGLAFGNWQM-SEGA 119

Query: 120 ELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           E +R     + VEN   +G +LY +Y    + SG ILL++MIGAIVL LRHR DIKRQD+
Sbjct: 120 EAARAAVTPDGVENTAALGMLLYDKYFLLFQTSGLILLVAMIGAIVLTLRHRSDIKRQDV 179

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
             Q+  +P  ++ +  VK G+G+
Sbjct: 180 LAQMYRDPAKAMELKDVKPGQGL 202


>gi|328543696|ref|YP_004303805.1| NADH dehydrogenase I chain J transmembrane protein [polymorphum
           gilvum SL003B-26A1]
 gi|326413440|gb|ADZ70503.1| Probable NADH dehydrogenase I chain J transmembrane protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 204

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 144/210 (68%), Gaps = 17/210 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++++LFFYLF+ + + S+F+V+  RNP++SV  LI AFVN+AGLF+LLGAE++AM+ +V
Sbjct: 1   MILKALFFYLFAGVTVASAFMVIASRNPVHSVLFLILAFVNSAGLFVLLGAEYLAMLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D +E+     ++GFL    +G L   +I+     +V  A  
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVEL-----RQGFLQYLPVGALVG-VILMVELLLVVGAWA 114

Query: 120 ELSRLVFKG----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
               ++  G          +NVE IG+VLYT+Y +  +++G +LL++M+GAIVL LRH+ 
Sbjct: 115 IAPEVIAHGSQPIPPLDQMSNVEAIGQVLYTKYVFFFQVAGLVLLVAMVGAIVLTLRHKE 174

Query: 170 DIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
            +KRQDI  Q+  N  ++I + KV+SGKGI
Sbjct: 175 GVKRQDIPTQVARNKKSAIEIRKVESGKGI 204


>gi|91204900|ref|YP_537255.1| NADH dehydrogenase subunit J [Rickettsia bellii RML369-C]
 gi|157827775|ref|YP_001496839.1| NADH dehydrogenase subunit J [Rickettsia bellii OSU 85-389]
 gi|122426098|sp|Q1RKE8|NUOJ_RICBR RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|91068444|gb|ABE04166.1| NADH dehydrogenase I chain J [Rickettsia bellii RML369-C]
 gi|157803079|gb|ABV79802.1| NADH dehydrogenase subunit J [Rickettsia bellii OSU 85-389]
          Length = 205

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 131/198 (66%), Gaps = 5/198 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ + IISS  VV  +N +YSV  LIFAF+N +GL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFAFINGSGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121
           V V FLF+IMMLD+    A  + K   + S F+  I+ A+L+V     +  + FS++   
Sbjct: 63  VAVLFLFVIMMLDMHFNKAIMQLKEKPILSIFVSLIMFADLVVIILLGTKNIHFSSDLSF 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           + +    +N + IGK+LYT +  P +I+G IL ++MIG I L LR R  +KRQ+I+KQL 
Sbjct: 123 A-IASDVSNTKAIGKILYTDFMIPFQIAGLILFVAMIGCITLTLRKRDGVKRQNIAKQLS 181

Query: 182 SNPDNSIVMVKVKSGKGI 199
            N +N+++M K    KGI
Sbjct: 182 HNKENAVLMTKPLINKGI 199


>gi|291613547|ref|YP_003523704.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sideroxydans
           lithotrophicus ES-1]
 gi|291583659|gb|ADE11317.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sideroxydans
           lithotrophicus ES-1]
          Length = 215

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 133/200 (66%), Gaps = 8/200 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++++ FY F+ + ++++  V+T RNP+++V  L+ AFV++AG++LLL AEF+A++ ++
Sbjct: 1   MNLETVLFYFFAIVTVLAALRVITARNPLHAVLFLVLAFVSSAGIWLLLEAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+IE    R + GF     +G+L A LI     +++ + E  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIE----RLREGFWRWLPVGLLLAALIGVQMVWVLGAKETS 116

Query: 121 LSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
               V K     +N + +G+++YT Y YP E++  +LL++M+ AI L LR RRD KRQDI
Sbjct: 117 AGMRVVKHAADYSNTKELGRLVYTDYVYPFELAAILLLVAMVAAIALTLRRRRDAKRQDI 176

Query: 177 SKQLESNPDNSIVMVKVKSG 196
           ++Q++    + + +V V S 
Sbjct: 177 NQQVKVKKQDRLRIVSVPSA 196


>gi|310816704|ref|YP_003964668.1| NADH dehydrogenase subunit J [Ketogulonicigenium vulgare Y25]
 gi|308755439|gb|ADO43368.1| NADH dehydrogenase subunit J [Ketogulonicigenium vulgare Y25]
          Length = 204

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 129/198 (65%), Gaps = 9/198 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+   +I   + VT RNP+++V  LI AF++AAGLF+L GAEFVAMI ++VYVGAV 
Sbjct: 5   FYVFAAGTLIGGLMTVTARNPVHAVLWLISAFLSAAGLFVLQGAEFVAMILMIVYVGAVA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGF--LGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V FLF++MMLD+D   A   K R F  +G     +LAA+L++   ++   +A G  +RL 
Sbjct: 65  VLFLFVVMMLDVDFA-ALRAKSRAFVPVGVVIGAVLAAQLVMVFGDWS--AAPGASARLA 121

Query: 126 FKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                  +N   +  +LY +Y    +++G +LL++MIGAIVL +RHR+D+KRQ++ +Q+ 
Sbjct: 122 TPTPAGVDNTHALALILYDRYFIAFQLAGLVLLVAMIGAIVLTMRHRQDVKRQNVLEQMS 181

Query: 182 SNPDNSIVMVKVKSGKGI 199
            +P  +I M    SG+G+
Sbjct: 182 RDPAKAIRMANPGSGQGL 199


>gi|42520778|ref|NP_966693.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410518|gb|AAS14627.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 195

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 135/195 (69%), Gaps = 8/195 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFY F+ ++I+S+  V++VRNP+++V  LIF FVN+A LF+LLGAEF+AM+ L+VY+GAV
Sbjct: 4   FFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVLIVYIGAV 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV- 125
            V FLF++MMLDID      R ++GF   F +G +   +     +F++ S+   +S ++ 
Sbjct: 64  AVLFLFVVMMLDID----YIRLRQGFAKHFTLGAILCGVFFLIISFVIRSSTLNISNVIN 119

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLESNP 184
           +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+ ++  +K+Q++ KQL  + 
Sbjct: 120 YNANNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQLTQS- 178

Query: 185 DNSIVMVKVKSGKGI 199
            +S+ +VK K GKG+
Sbjct: 179 -SSVKLVKAKFGKGV 192


>gi|110680453|ref|YP_683460.1| NADH dehydrogenase subunit J [Roseobacter denitrificans OCh 114]
 gi|109456569|gb|ABG32774.1| NADH-quinone oxidoreductase chain J [Roseobacter denitrificans OCh
           114]
          Length = 200

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 124/198 (62%), Gaps = 9/198 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   I      V  RNP++SV  LI AF++AAGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISVIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVLLGAEFVAMLLIIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVFSAEGELS 122
           V FLF++MMLD+D    +    +    +  IG++     A       SN    +AEG  +
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMSKYLPLALLIGVVLLMQFAIAFGAWESN---AAAEGMRA 122

Query: 123 RLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           ++     +N E +G +LY QY    ++SG ILL++MIGAIVL LRHR D+KRQD+  Q+ 
Sbjct: 123 QVTPVDRHNTEALGMILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRSDVKRQDVVAQMM 182

Query: 182 SNPDNSIVMVKVKSGKGI 199
            +P  ++ +  VKSG+G+
Sbjct: 183 RDPAKAMELKDVKSGQGL 200


>gi|294677070|ref|YP_003577685.1| NADH-quinone oxidoreductase subunit J [Rhodobacter capsulatus SB
           1003]
 gi|1709410|sp|P50975|NUOJ_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|3282575|gb|AAC25001.1| NUOJ [Rhodobacter capsulatus]
 gi|294475890|gb|ADE85278.1| NADH-quinone oxidoreductase, J subunit [Rhodobacter capsulatus SB
           1003]
 gi|1586524|prf||2204231E NADH ubiquinone oxidoreductase
          Length = 202

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 130/198 (65%), Gaps = 9/198 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+ +A+++  +VV  +NP+++V  LI  F++AAGLF+L+GAEFVAM+ ++VYVGAV 
Sbjct: 8   FYLFAVVAVVAGLMVVLSKNPVHAVLWLILTFLSAAGLFVLMGAEFVAMLLIIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR-GFLGSFFIGILAAELIVCASNFMVF----SAEGELS 122
           V FLF++MMLDID      +  R   +G     ++ A+L   A+  MV+    +A G  +
Sbjct: 68  VLFLFVVMMLDIDFAALRGQLVRYAPVGGLIALVMLAQL---ATGLMVWNTADAANGLRA 124

Query: 123 RLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
               +G  N   +G +LY +Y Y  + +G +LL++MIGAI+L LRHR DIKRQ++  Q+ 
Sbjct: 125 APAPEGVENTAALGMILYDRYLYLFQGAGLVLLVAMIGAILLTLRHRTDIKRQNVLAQMH 184

Query: 182 SNPDNSIVMVKVKSGKGI 199
            +P  ++ MV VK G+G+
Sbjct: 185 RDPAKALEMVDVKPGQGL 202


>gi|114569914|ref|YP_756594.1| NADH dehydrogenase (quinone) [Maricaulis maris MCS10]
 gi|114340376|gb|ABI65656.1| NADH dehydrogenase subunit J [Maricaulis maris MCS10]
          Length = 203

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 127/204 (62%), Gaps = 11/204 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +L F+ FS +AI+S+ +VV  RNP+ SV  LI AF +AAGLF+LLGAEF+AM+ +VVY
Sbjct: 2   LANLAFWAFSGVAILSALMVVIARNPVRSVLFLILAFFSAAGLFVLLGAEFLAMLLIVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVFSA 117
           VGAV V FLF++MMLD+D        K+GFL    +G     ILA EL +    +     
Sbjct: 62  VGAVAVLFLFVVMMLDVDFT----ELKQGFLSYLPLGGLVAIILAVELGMIGMTWQASEQ 117

Query: 118 EGELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              L          NVE +G V+Y QY Y  + +G +LL++MIGAIVL LRH+  ++RQ 
Sbjct: 118 AMALRDAAIPDGLTNVEALGLVIYDQYVYFFQAAGLVLLVAMIGAIVLTLRHKPGVRRQS 177

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +S Q+  +  +++ M  +K G+GI
Sbjct: 178 VSAQVARDRKDAVTMHDIKPGQGI 201


>gi|103486786|ref|YP_616347.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingopyxis
           alaskensis RB2256]
 gi|98976863|gb|ABF53014.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingopyxis
           alaskensis RB2256]
          Length = 203

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 134/207 (64%), Gaps = 17/207 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + FYLF+ + I S+ +V+  RNP++SV  LI AF NAAGL LL GAEF+AM+ ++VY
Sbjct: 2   IQLIAFYLFATIVIASAAMVIFARNPVHSVMWLILAFFNAAGLMLLAGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA 117
           VGAV V FLF++MMLDID   AE R   GF     LG+    ILAAELI        +SA
Sbjct: 62  VGAVAVLFLFVVMMLDIDF--AELRA--GFVRYLPLGALVAIILAAELIFAVG---AWSA 114

Query: 118 EG-----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            G       + +V   +N++ IG++LYT+Y +  E +G +LL++MIGAIVL  R R  ++
Sbjct: 115 GGVDLAARTAPVVSDKSNIQQIGELLYTKYIFLFEAAGIVLLVAMIGAIVLTHRQRGGVR 174

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
            Q+IS+Q+   P+++  +V   +G+G+
Sbjct: 175 AQNISQQVRRRPEDATRLVDPGTGQGV 201


>gi|163732048|ref|ZP_02139494.1| NADH dehydrogenase subunit J [Roseobacter litoralis Och 149]
 gi|161394346|gb|EDQ18669.1| NADH dehydrogenase subunit J [Roseobacter litoralis Och 149]
          Length = 200

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 124/198 (62%), Gaps = 9/198 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   I      V  RNP++SV  LI AF++AAGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISVIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVLLGAEFVAMLLIIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVFSAEGELS 122
           V FLF++MMLD+D    +    +    +  IG++     A       SN    +AEG  +
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMSKYLPLALLIGVVLLMQFAIAFGAWESN---AAAEGMRA 122

Query: 123 RLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           ++     +N E +G +LY QY    ++SG ILL++MIGAIVL LRHR D+KRQD+  Q+ 
Sbjct: 123 QVTPVDRHNTEALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRSDVKRQDVVAQMM 182

Query: 182 SNPDNSIVMVKVKSGKGI 199
            +P  ++ +  VKSG+G+
Sbjct: 183 RDPAKAMELKDVKSGQGL 200


>gi|260434166|ref|ZP_05788137.1| NADH-quinone oxidoreductase subunit j [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417994|gb|EEX11253.1| NADH-quinone oxidoreductase subunit j [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 200

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 123/200 (61%), Gaps = 13/200 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISAITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----SAEGELSR 123
           V FLF++MMLD+D    +    R    +  IG     L++     M F    SA+G  + 
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAFGAWESAQGAAAN 120

Query: 124 LV----FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           L        +N E +G +LY QY    +++G ILL++MIGAIVL LRHR+D+KRQD+  Q
Sbjct: 121 LAQPIPADRHNTEALGLILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRKDVKRQDVIAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPAQALELKDVKPGQGL 200


>gi|296116525|ref|ZP_06835135.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976737|gb|EFG83505.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 257

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 129/201 (64%), Gaps = 4/201 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+F+ + ++S+ +VV+ RNP++SV  LI AF NAAGLFL+ GAEF+AMI ++VY
Sbjct: 2   MTQIVFYIFAAVLVLSASMVVSARNPVHSVLFLILAFFNAAGLFLIAGAEFLAMILVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLDI I  A E  ++    G+    +L  EL++   ++ V S  G++
Sbjct: 62  VGAVAVLFLFVVMMLDIRIAQAREGLQRYAPFGAAIGAVLLGELVLAFMHWRVASNIGDV 121

Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           + LV      +N   IG VLYT Y +  +    +LL++MIGAIVL LR R   +RQDI +
Sbjct: 122 AHLVPSTPTRSNTAAIGDVLYTHYIFLFQACALVLLVAMIGAIVLTLRDRPTGRRQDIER 181

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q E +P  S+ M+ +  G+ +
Sbjct: 182 QHERDPAESMEMLSLPLGRSV 202


>gi|254476174|ref|ZP_05089560.1| NADH dehydrogenase i, j subunit [Ruegeria sp. R11]
 gi|214030417|gb|EEB71252.1| NADH dehydrogenase i, j subunit [Ruegeria sp. R11]
          Length = 200

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 122/200 (61%), Gaps = 13/200 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----SAEGELSR 123
           V FLF++MMLD+D    +    R    +  IG     L++     M F    SA    S+
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAFGAWESAPAAGSQ 120

Query: 124 LV----FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           L        +N E +G +LY QY    ++SG ILL++MIGAIVL LRHR+D+KRQD+  Q
Sbjct: 121 LAQPIPADKHNTEALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200


>gi|126729569|ref|ZP_01745382.1| NADH dehydrogenase subunit J [Sagittula stellata E-37]
 gi|126709688|gb|EBA08741.1| NADH dehydrogenase subunit J [Sagittula stellata E-37]
          Length = 200

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 127/202 (62%), Gaps = 7/202 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FYLF+   I      V  RNP++SV  LI AF+++AGLF+L+GAEFVAM+ ++VY
Sbjct: 1   MMAFAFYLFALGVIAGGLFTVVSRNPVHSVLWLILAFLSSAGLFVLMGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE---- 118
           VGAV V FLF++MMLD+D    +    R    +  IG++   L+  A  F V+ A     
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVI--LMQLAMAFGVWEASDLAA 118

Query: 119 GELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           G+LS    +G  N   +G +LY +Y    ++SG ILL++MIGAIVL LRHR+D+KRQD+ 
Sbjct: 119 GQLSAPAPEGIENTAALGMILYDKYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVL 178

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ +  V+ G+G+
Sbjct: 179 AQMYRDPAKAMELRDVRPGQGL 200


>gi|56697605|ref|YP_167974.1| NADH dehydrogenase subunit J [Ruegeria pomeroyi DSS-3]
 gi|56679342|gb|AAV96008.1| NADH dehydrogenase I, J subunit [Ruegeria pomeroyi DSS-3]
          Length = 200

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 13/200 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----SAEGELSR 123
           V FLF++MMLD+D    +    R    +  IG     L++     M +    +AEG    
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAYGAWETAEGAAGH 120

Query: 124 LV----FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           L        +N E +G ++Y QY    +++G ILL++MIGAIVL LRHR+D+KRQDI  Q
Sbjct: 121 LAQPMPADRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDIVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200


>gi|163738811|ref|ZP_02146225.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis BS107]
 gi|161388139|gb|EDQ12494.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis BS107]
          Length = 200

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 124/200 (62%), Gaps = 13/200 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLIIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGE 120
           V FLF++MMLD+D    +    R    +  IG     L++     M F       +A  +
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAFGAWETAPAAATQ 120

Query: 121 LSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           L++ +    +N E +G ++Y QY    ++SG ILL++MIGAIVL LRHR+D+KRQD+  Q
Sbjct: 121 LAQPIPADQHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPATAMELKDVKPGQGL 200


>gi|254509596|ref|ZP_05121663.1| NADH dehydrogenase i, j subunit [Rhodobacteraceae bacterium KLH11]
 gi|221533307|gb|EEE36295.1| NADH dehydrogenase i, j subunit [Rhodobacteraceae bacterium KLH11]
          Length = 200

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 123/200 (61%), Gaps = 13/200 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  AI      V  R P++SV  LI +F+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISAITGGLFTVISRQPVHSVLWLILSFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----SAEGELSR 123
           V FLF++MMLD+D    +    R    +  IG     L++     M F    SA+G  + 
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAFGAWDSAQGAAAN 120

Query: 124 LV----FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           L        +N E +G +LY QY    +++G ILL++MIGAIVL LRHR+DIKRQDI  Q
Sbjct: 121 LAQPVPTDRHNTEALGVILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDIKRQDIIGQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200


>gi|163741478|ref|ZP_02148869.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis 2.10]
 gi|161385212|gb|EDQ09590.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis 2.10]
          Length = 200

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 124/195 (63%), Gaps = 3/195 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLV 125
           V FLF++MMLD+D    +    R    +  IG  IL   ++   +     +A  +L++ +
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAYGAWETAPAAATQLAQPI 125

Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
               +N E +G ++Y QY    ++SG ILL++MIGAIVL LRHR+D+KRQD+  Q+  +P
Sbjct: 126 PTDQHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQMMRDP 185

Query: 185 DNSIVMVKVKSGKGI 199
             ++ +  VK G+G+
Sbjct: 186 ATAMELKDVKPGQGL 200


>gi|306843748|ref|ZP_07476347.1| NADH dehydrogenase subunit J [Brucella sp. BO1]
 gi|306275939|gb|EFM57652.1| NADH dehydrogenase subunit J [Brucella sp. BO1]
          Length = 205

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 122/192 (63%), Gaps = 12/192 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M
Sbjct: 18  IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 77

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127
           MLD+D        KRG L    +G     IL  ELI V AS  F     +G L    V  
Sbjct: 78  MLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVAT 133

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187
             N   +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ IS Q+   P+ +
Sbjct: 134 RTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSISAQVARTPETA 193

Query: 188 IVMVKVKSGKGI 199
           I + KV++GKGI
Sbjct: 194 IEIRKVETGKGI 205


>gi|190571385|ref|YP_001975743.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357657|emb|CAQ55101.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 195

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 134/195 (68%), Gaps = 8/195 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFY F+ ++I+S+  V++VRNP+++V  LIF FVN+A LF+LLGAEF+AM+ ++VY+GAV
Sbjct: 4   FFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVMIVYIGAV 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV- 125
            V FLF++MMLDID      R ++GF     +G +   +     +F++ S+   +S ++ 
Sbjct: 64  AVLFLFVVMMLDID----YIRLRQGFAKHCTLGAMLCVVFFLVISFVIRSSAPNISNVIN 119

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLESNP 184
           +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+ ++  +K+Q++ KQL  + 
Sbjct: 120 YNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQLTQS- 178

Query: 185 DNSIVMVKVKSGKGI 199
            +S+ +VK K GKG+
Sbjct: 179 -SSVKLVKAKFGKGV 192


>gi|157804159|ref|YP_001492708.1| NADH dehydrogenase subunit J [Rickettsia canadensis str. McKiel]
 gi|157785422|gb|ABV73923.1| NADH dehydrogenase subunit J [Rickettsia canadensis str. McKiel]
          Length = 205

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 126/201 (62%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISSF VV  +N +YSV  LIFAF+N + L +LLGAEF+AMI +V+YVGA
Sbjct: 3   IFFYLFATLITISSFCVVLNKNSVYSVLWLIFAFLNGSSLMILLGAEFLAMILIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121
           V V FLF+IMMLD+    A  + K     S  I  I+ A+L++     +  + FS++   
Sbjct: 63  VAVLFLFVIMMLDMHFNKAITQLKENLTLSILISLIMFADLVIIILLGTKNINFSSD--- 119

Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             L    NN+ N   IG +LYT +  P +++G IL ++MI  IVL LR R  IKRQDI K
Sbjct: 120 -ILFATTNNISNTKAIGNILYTDFMIPFQMAGLILFVAMISCIVLTLRKREGIKRQDILK 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N +N+++M K    KGI
Sbjct: 179 QLSHNKENAVLMTKPLLNKGI 199


>gi|89070161|ref|ZP_01157490.1| NADH dehydrogenase I, J subunit [Oceanicola granulosus HTCC2516]
 gi|89044278|gb|EAR50424.1| NADH dehydrogenase I, J subunit [Oceanicola granulosus HTCC2516]
          Length = 196

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 123/195 (63%), Gaps = 3/195 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+   I      V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 2   FYVFAVTTIAGGLFTVVSRNPVHSVLWLILAFLSSAGLFILLGAEFVAMLLVIVYVGAVA 61

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLV 125
           V FLF++MMLD+D    +    R    +  IGI+    +  A     F A  +  L+  V
Sbjct: 62  VLFLFVVMMLDVDFAALKAEMARYMPLALLIGIVILMQLALAFGVWTFGAGVDERLAAPV 121

Query: 126 FKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             G +N E +G +LY +Y    +++G ILL++MIGAIVL LRHR D+KRQ++ +Q+  +P
Sbjct: 122 VGGVHNTEGLGFLLYDRYILLFQLAGLILLVAMIGAIVLTLRHREDVKRQNVLEQMYRDP 181

Query: 185 DNSIVMVKVKSGKGI 199
             ++ +  VK G+G+
Sbjct: 182 ATAMELRDVKPGQGL 196


>gi|15604622|ref|NP_221140.1| NADH dehydrogenase subunit J [Rickettsia prowazekii str. Madrid E]
 gi|20139313|sp|Q9ZCG3|NUOJ_RICPR RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|3861317|emb|CAA15216.1| NADH DEHYDROGENASE I CHAIN J (nuoJ) [Rickettsia prowazekii]
 gi|292572439|gb|ADE30354.1| NADH dehydrogenase I chain J [Rickettsia prowazekii Rp22]
          Length = 205

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 125/201 (62%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ + IISS  VV  +N +YSV  LIF F+N +GL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFTFINGSGLMILLGAEFLAMLLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAE--GELS 122
           V V FLF+IMMLDI+   A  + +     S FI  I+ A+L++     ++ S +     S
Sbjct: 63  VAVLFLFVIMMLDINFNQAITKLRENLSLSIFITLIMFADLVIT----IILSTKNINYSS 118

Query: 123 RLVFK-GNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            + F   NN+ N   IG VLYT++  P +I+G IL ++MI  I L L+ R  IK QDI K
Sbjct: 119 NISFAIANNISNTKAIGNVLYTEFMLPFQIAGLILFVAMISCITLTLKKRDRIKHQDIRK 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N  N I+M K    KG+
Sbjct: 179 QLSHNKSNVILMTKPILNKGV 199


>gi|225631322|ref|ZP_03787996.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590973|gb|EEH12181.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 195

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 134/195 (68%), Gaps = 8/195 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFY F+ ++I+S+  V++VRNP+++V  LIF FVN+A LF+LLGAEF+AM+ ++VY+GAV
Sbjct: 4   FFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVMIVYIGAV 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV- 125
            V FLF++MMLDID      R ++GF     +G +   +     +F++ S+   +S ++ 
Sbjct: 64  AVLFLFVVMMLDID----YIRLRQGFAKHCTLGAMLCVVFFLVISFVIRSSAPNISNVIN 119

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLESNP 184
           +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+ ++  +K+Q++ KQL  + 
Sbjct: 120 YNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQLTQS- 178

Query: 185 DNSIVMVKVKSGKGI 199
            +S+ ++K K GKG+
Sbjct: 179 -SSVKLIKAKFGKGV 192


>gi|86137585|ref|ZP_01056162.1| NADH dehydrogenase I, J subunit [Roseobacter sp. MED193]
 gi|85825920|gb|EAQ46118.1| NADH dehydrogenase I, J subunit [Roseobacter sp. MED193]
          Length = 200

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 123/195 (63%), Gaps = 3/195 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLV 125
           V FLF++MMLD+D    +    +    +  IG  IL   ++   S      A  +L++ +
Sbjct: 66  VLFLFVVMMLDVDFAALKAEMAQYMPLALLIGLVILMQFVMAYGSWESAHGAAAQLAQPI 125

Query: 126 FKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
            +  +N E +G ++Y QY    ++SG ILL++MIGAI L LRHR+D+KRQD+  Q+  +P
Sbjct: 126 PEDRHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAITLTLRHRKDVKRQDVMLQMSRDP 185

Query: 185 DNSIVMVKVKSGKGI 199
             ++ +  +K G+G+
Sbjct: 186 AKAMELKDIKPGQGL 200


>gi|288958980|ref|YP_003449321.1| NADH dehydrogenase I chain J [Azospirillum sp. B510]
 gi|288911288|dbj|BAI72777.1| NADH dehydrogenase I chain J [Azospirillum sp. B510]
          Length = 204

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 132/204 (64%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++Q + FY+F+ + + S  +V++ RNP++SV  LI AF  AAGL +L+GAEF+AMI ++
Sbjct: 1   MIVQGIAFYVFAALLVASGVMVISARNPVHSVLYLILAFFQAAGLCVLMGAEFIAMILVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VF 115
           VYVGAV V FLF++MMLDI+  E+ +   +   LG+    IL AEL      ++    V 
Sbjct: 61  VYVGAVAVLFLFVVMMLDINFRELRQGAMEALPLGALVGLILLAELAAVLGGWIVAPNVA 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +  G  +  + +  N   +G+++YTQY Y  + SG ILL++MIGAIVL LRHR  +++Q+
Sbjct: 121 ATIGAPTPALDQVTNTHALGRLIYTQYVYLFQASGIILLIAMIGAIVLTLRHRAGVRKQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+    ++ + + KV +G+G+
Sbjct: 181 VGVQIARRREDVVAIRKVTTGEGV 204


>gi|260574772|ref|ZP_05842775.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodobacter
           sp. SW2]
 gi|259023189|gb|EEW26482.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodobacter
           sp. SW2]
          Length = 204

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/199 (42%), Positives = 128/199 (64%), Gaps = 9/199 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+F+ + S+ LV   RNP++SV  LI AF++ AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 8   FYLFAFVTLTSALLVTVSRNPVHSVLWLILAFISTAGLFVLLGAEFVAMLLMIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS---R 123
           V FLF++MMLDID      +  R   +G  F  +L  E     + F+   A+G ++    
Sbjct: 68  VLFLFVVMMLDIDFAALRGKMTRYLPIGLAFGVVLLLEF--SMALFVWVQADGAVAMRQA 125

Query: 124 LVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           +      VEN   +G ++Y +Y Y  + +G ILL++MIGAI+L LRHR+DIKRQ++  Q+
Sbjct: 126 VAPDPGQVENTRALGLLIYDKYIYLFQAAGLILLVAMIGAILLTLRHRKDIKRQNVLHQM 185

Query: 181 ESNPDNSIVMVKVKSGKGI 199
             +P  ++ +  +K G+G+
Sbjct: 186 WRDPAKTMEIKDIKPGQGL 204


>gi|99080597|ref|YP_612751.1| NADH dehydrogenase subunit J [Ruegeria sp. TM1040]
 gi|99036877|gb|ABF63489.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
          Length = 200

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 122/195 (62%), Gaps = 3/195 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISAITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLV 125
           V FLF++MMLD+D    +    R    +  IG  IL   +I   S     S    LS+ +
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMARYTPLALLIGLVILMQFVIAYGSWESAHSVAENLSQPI 125

Query: 126 FKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
               +N E +G +LY QY    +++G ILL++MIGAIVL LRHR+D+KRQD+  Q+  +P
Sbjct: 126 PTDRHNTEALGLILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDVLAQMYRDP 185

Query: 185 DNSIVMVKVKSGKGI 199
             ++ +  +K G+G+
Sbjct: 186 AKAMELKDIKPGQGL 200


>gi|17987432|ref|NP_540066.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 1 str. 16M]
 gi|17983124|gb|AAL52330.1| NADH-quinone oxidoreductase chain j [Brucella melitensis bv. 1 str.
           16M]
          Length = 189

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 121/192 (63%), Gaps = 12/192 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M
Sbjct: 2   IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 61

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127
           MLD+D        KRG L    +G     IL  ELI V AS  F     +G L    V  
Sbjct: 62  MLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVAT 117

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187
             N   +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ I  Q+   P+ +
Sbjct: 118 RTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETA 177

Query: 188 IVMVKVKSGKGI 199
           I + KV++GKGI
Sbjct: 178 IEIRKVETGKGI 189


>gi|23501698|ref|NP_697825.1| NADH dehydrogenase subunit J [Brucella suis 1330]
 gi|62289760|ref|YP_221553.1| NADH dehydrogenase subunit J [Brucella abortus bv. 1 str. 9-941]
 gi|82699688|ref|YP_414262.1| NADH dehydrogenase subunit J [Brucella melitensis biovar Abortus
           2308]
 gi|148559090|ref|YP_001258789.1| NADH dehydrogenase subunit J [Brucella ovis ATCC 25840]
 gi|161618775|ref|YP_001592662.1| NADH dehydrogenase subunit J [Brucella canis ATCC 23365]
 gi|163843084|ref|YP_001627488.1| NADH dehydrogenase subunit J [Brucella suis ATCC 23445]
 gi|189024005|ref|YP_001934773.1| NADH dehydrogenase subunit J [Brucella abortus S19]
 gi|225852327|ref|YP_002732560.1| NADH dehydrogenase subunit J [Brucella melitensis ATCC 23457]
 gi|254689067|ref|ZP_05152321.1| NADH dehydrogenase subunit J [Brucella abortus bv. 6 str. 870]
 gi|254693549|ref|ZP_05155377.1| NADH dehydrogenase subunit J [Brucella abortus bv. 3 str. Tulya]
 gi|254697201|ref|ZP_05159029.1| NADH dehydrogenase subunit J [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701579|ref|ZP_05163407.1| NADH dehydrogenase subunit J [Brucella suis bv. 5 str. 513]
 gi|254704126|ref|ZP_05165954.1| NADH dehydrogenase subunit J [Brucella suis bv. 3 str. 686]
 gi|254706974|ref|ZP_05168802.1| NADH dehydrogenase subunit J [Brucella pinnipedialis M163/99/10]
 gi|254709919|ref|ZP_05171730.1| NADH dehydrogenase subunit J [Brucella pinnipedialis B2/94]
 gi|254713920|ref|ZP_05175731.1| NADH dehydrogenase subunit J [Brucella ceti M644/93/1]
 gi|254717022|ref|ZP_05178833.1| NADH dehydrogenase subunit J [Brucella ceti M13/05/1]
 gi|254730097|ref|ZP_05188675.1| NADH dehydrogenase subunit J [Brucella abortus bv. 4 str. 292]
 gi|256031412|ref|ZP_05445026.1| NADH dehydrogenase subunit J [Brucella pinnipedialis M292/94/1]
 gi|256044490|ref|ZP_05447394.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060923|ref|ZP_05451081.1| NADH dehydrogenase subunit J [Brucella neotomae 5K33]
 gi|256113346|ref|ZP_05454204.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 3 str. Ether]
 gi|256159533|ref|ZP_05457301.1| NADH dehydrogenase subunit J [Brucella ceti M490/95/1]
 gi|256254820|ref|ZP_05460356.1| NADH dehydrogenase subunit J [Brucella ceti B1/94]
 gi|256257316|ref|ZP_05462852.1| NADH dehydrogenase subunit J [Brucella abortus bv. 9 str. C68]
 gi|256264174|ref|ZP_05466706.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|256369243|ref|YP_003106751.1| NADH dehydrogenase subunit J [Brucella microti CCM 4915]
 gi|260168546|ref|ZP_05755357.1| NADH dehydrogenase subunit J [Brucella sp. F5/99]
 gi|260545490|ref|ZP_05821231.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella abortus NCTC
           8038]
 gi|260563844|ref|ZP_05834330.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260566625|ref|ZP_05837095.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella suis bv. 4
           str. 40]
 gi|260754565|ref|ZP_05866913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 6 str. 870]
 gi|260757786|ref|ZP_05870134.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 4 str. 292]
 gi|260761611|ref|ZP_05873954.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260883592|ref|ZP_05895206.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 9 str. C68]
 gi|261213814|ref|ZP_05928095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 3 str. Tulya]
 gi|261218829|ref|ZP_05933110.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M13/05/1]
 gi|261222001|ref|ZP_05936282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           B1/94]
 gi|261314437|ref|ZP_05953634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis M163/99/10]
 gi|261317465|ref|ZP_05956662.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis B2/94]
 gi|261321672|ref|ZP_05960869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M644/93/1]
 gi|261324923|ref|ZP_05964120.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           neotomae 5K33]
 gi|261752132|ref|ZP_05995841.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis
           bv. 5 str. 513]
 gi|261754792|ref|ZP_05998501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis
           bv. 3 str. 686]
 gi|261758019|ref|ZP_06001728.1| NADH dehydrogenase subunit J [Brucella sp. F5/99]
 gi|265988501|ref|ZP_06101058.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis M292/94/1]
 gi|265990914|ref|ZP_06103471.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994752|ref|ZP_06107309.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           melitensis bv. 3 str. Ether]
 gi|265997965|ref|ZP_06110522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M490/95/1]
 gi|294852168|ref|ZP_06792841.1| NADH dehydrogenase I subunit J [Brucella sp. NVSL 07-0026]
 gi|297248165|ref|ZP_06931883.1| NADH dehydrogenase I subunit J [Brucella abortus bv. 5 str. B3196]
 gi|23347621|gb|AAN29740.1| NADH dehydrogenase I, J subunit [Brucella suis 1330]
 gi|62195892|gb|AAX74192.1| NuoJ, NADH dehydrogenase I, J subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615789|emb|CAJ10787.1| Photosynthetic reaction centre
           protein:NADH-ubiquinone/plastoquinone oxidoreductase,
           chain 6 [Brucella melitensis biovar Abortus 2308]
 gi|148370347|gb|ABQ60326.1| NADH dehydrogenase I, J subunit [Brucella ovis ATCC 25840]
 gi|161335586|gb|ABX61891.1| NADH-quinone oxidoreductase chain J [Brucella canis ATCC 23365]
 gi|163673807|gb|ABY37918.1| NADH-quinone oxidoreductase chain J [Brucella suis ATCC 23445]
 gi|189019577|gb|ACD72299.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Brucella
           abortus S19]
 gi|225640692|gb|ACO00606.1| NADH-quinone oxidoreductase subunit J [Brucella melitensis ATCC
           23457]
 gi|255999403|gb|ACU47802.1| NADH dehydrogenase subunit J [Brucella microti CCM 4915]
 gi|260096897|gb|EEW80772.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella abortus NCTC
           8038]
 gi|260153860|gb|EEW88952.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260156143|gb|EEW91223.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella suis bv. 4
           str. 40]
 gi|260668104|gb|EEX55044.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 4 str. 292]
 gi|260672043|gb|EEX58864.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260674673|gb|EEX61494.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 6 str. 870]
 gi|260873120|gb|EEX80189.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 9 str. C68]
 gi|260915421|gb|EEX82282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 3 str. Tulya]
 gi|260920585|gb|EEX87238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           B1/94]
 gi|260923918|gb|EEX90486.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M13/05/1]
 gi|261294362|gb|EEX97858.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M644/93/1]
 gi|261296688|gb|EEY00185.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis B2/94]
 gi|261300903|gb|EEY04400.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           neotomae 5K33]
 gi|261303463|gb|EEY06960.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis M163/99/10]
 gi|261738003|gb|EEY25999.1| NADH dehydrogenase subunit J [Brucella sp. F5/99]
 gi|261741885|gb|EEY29811.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis
           bv. 5 str. 513]
 gi|261744545|gb|EEY32471.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis
           bv. 3 str. 686]
 gi|262552433|gb|EEZ08423.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M490/95/1]
 gi|262765865|gb|EEZ11654.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001698|gb|EEZ14273.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094392|gb|EEZ18237.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264660698|gb|EEZ30959.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis M292/94/1]
 gi|294820757|gb|EFG37756.1| NADH dehydrogenase I subunit J [Brucella sp. NVSL 07-0026]
 gi|297175334|gb|EFH34681.1| NADH dehydrogenase I subunit J [Brucella abortus bv. 5 str. B3196]
 gi|326408834|gb|ADZ65899.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Brucella
           melitensis M28]
 gi|326538550|gb|ADZ86765.1| NADH-quinone oxidoreductase subunit J [Brucella melitensis M5-90]
          Length = 205

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 121/192 (63%), Gaps = 12/192 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M
Sbjct: 18  IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 77

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127
           MLD+D        KRG L    +G     IL  ELI V AS  F     +G L    V  
Sbjct: 78  MLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVAT 133

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187
             N   +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ I  Q+   P+ +
Sbjct: 134 RTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETA 193

Query: 188 IVMVKVKSGKGI 199
           I + KV++GKGI
Sbjct: 194 IEIRKVETGKGI 205


>gi|225627308|ref|ZP_03785345.1| NADH-quinone oxidoreductase subunit J [Brucella ceti str. Cudo]
 gi|237815247|ref|ZP_04594245.1| NADH-quinone oxidoreductase subunit J [Brucella abortus str. 2308
           A]
 gi|225617313|gb|EEH14358.1| NADH-quinone oxidoreductase subunit J [Brucella ceti str. Cudo]
 gi|237790084|gb|EEP64294.1| NADH-quinone oxidoreductase subunit J [Brucella abortus str. 2308
           A]
          Length = 215

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 121/192 (63%), Gaps = 12/192 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M
Sbjct: 28  IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 87

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127
           MLD+D        KRG L    +G     IL  ELI V AS  F     +G L    V  
Sbjct: 88  MLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVAT 143

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187
             N   +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ I  Q+   P+ +
Sbjct: 144 RTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETA 203

Query: 188 IVMVKVKSGKGI 199
           I + KV++GKGI
Sbjct: 204 IEIRKVETGKGI 215


>gi|114707378|ref|ZP_01440275.1| NADH dehydrogenase subunit J [Fulvimarina pelagi HTCC2506]
 gi|114537259|gb|EAU40386.1| NADH dehydrogenase subunit J [Fulvimarina pelagi HTCC2506]
          Length = 205

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/187 (44%), Positives = 123/187 (65%), Gaps = 5/187 (2%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S+ +VV  +NP++SV  LI  FV AAGLFLL GAEF+A+I +VVYVGAV + FLF++MML
Sbjct: 19  SALMVVLAKNPVHSVLFLILTFVAAAGLFLLAGAEFLALILIVVYVGAVAILFLFVVMML 78

Query: 78  DIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFM---VFSAEGELSRLVFKG-NNVE 132
           D+D+   + R  +    G+    +L AELI+  S  +   V +++  L      G +N+E
Sbjct: 79  DLDVGQLKSRAIQYAPFGAIIAVLLLAELIIAGSGTIADPVLASQTALPMAEAGGASNIE 138

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
            +G VLYT+Y    +++G IL ++MIGAIVL LRH+  ++RQ I  Q+  NP  SI + +
Sbjct: 139 ALGNVLYTRYILFFQLAGLILFVAMIGAIVLTLRHKEKVRRQSIPDQVARNPSTSIEVKQ 198

Query: 193 VKSGKGI 199
           V+SG+GI
Sbjct: 199 VESGRGI 205


>gi|254294093|ref|YP_003060116.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hirschia
           baltica ATCC 49814]
 gi|254042624|gb|ACT59419.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hirschia
           baltica ATCC 49814]
          Length = 204

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 127/203 (62%), Gaps = 12/203 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ + FY+ S + +IS+  V+  RNP++SV  LI +F  AAGL +L+GAEF+AM+ +VVY
Sbjct: 1   MQLIAFYILSTVVLISAISVIASRNPVHSVLWLILSFFTAAGLLVLIGAEFLAMLLIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVFSA 117
           VGAV V FLF++MMLD+D   AE RK  GF   F +G      L AE+ V A++    S 
Sbjct: 61  VGAVAVLFLFVVMMLDVDF--AEMRK--GFADYFVVGGLVALALLAEIGVVAAS--ANSV 114

Query: 118 EGE-LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           EG           N E +  VLYT Y    +++G +LL++MIGAIVL LRHR D+KRQ +
Sbjct: 115 EGRNFDPSPGADTNAEALSNVLYTDYLLLFQMAGIVLLVAMIGAIVLTLRHRPDVKRQKV 174

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q     + ++ ++KV  G+GI
Sbjct: 175 EEQTARRREEAVELIKVNPGQGI 197


>gi|209964541|ref|YP_002297456.1| NADH-quinone oxidoreductase chain J [Rhodospirillum centenum SW]
 gi|209958007|gb|ACI98643.1| NADH-quinone oxidoreductase chain J [Rhodospirillum centenum SW]
          Length = 204

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 127/204 (62%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+ +  FY+F+ + + +  +VV+ RNP++SV  LI AF NAA LFLL+GAEF+AMI ++
Sbjct: 1   MVLSAAAFYVFAAILLAAGVMVVSARNPVHSVLYLIVAFFNAAVLFLLIGAEFIAMILII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDI   E+    ++   LG+    IL AEL +   ++ V     
Sbjct: 61  VYVGAVAVLFLFVVMMLDISFQEIRRTYRQYVPLGALIGTILMAELALVTVSWAVAPDAA 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                        NN E +G+VLYT Y +  ++SG ILL++MIGAIVL LR R  ++RQ 
Sbjct: 121 ASLAAPTPADTAVNNTEALGQVLYTHYVFAFQVSGLILLVAMIGAIVLTLRSRGGLRRQV 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I++Q+   P+  + + KV +  G+
Sbjct: 181 IAQQIRRRPEEVLSVRKVPTRGGV 204


>gi|239946839|ref|ZP_04698592.1| NADH-quinone oxidoreductase subunit J [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921115|gb|EER21139.1| NADH-quinone oxidoreductase subunit J [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 205

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/201 (44%), Positives = 125/201 (62%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  IS   VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISGLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL---IVCASNFMVFSAEGEL 121
           V V FLF+IMMLD+       + K     S FI  I+ A+L   I+  +  + FS++   
Sbjct: 63  VAVLFLFVIMMLDMHFNKTITQLKENLALSIFIALIMFADLVTVILLGTKNINFSSDISF 122

Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +      NN+ N   IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISK
Sbjct: 123 AI----TNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N +N+++M K    KG+
Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199


>gi|153009742|ref|YP_001370957.1| NADH dehydrogenase subunit J [Ochrobactrum anthropi ATCC 49188]
 gi|151561630|gb|ABS15128.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ochrobactrum
           anthropi ATCC 49188]
          Length = 205

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 124/192 (64%), Gaps = 12/192 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M
Sbjct: 18  IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 77

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127
           MLD+D        KRG L    +G     IL  ELI V ASN F     +G +    + +
Sbjct: 78  MLDVDFS----ELKRGALQYAPVGALVGLILLGELIFVFASNMFAPKLGQGAVPIPNIAE 133

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187
            +N   +G +LYT + +  +++G +LL++MIGAIVL LRH+ ++KRQ I  Q+   P+ +
Sbjct: 134 RSNTAALGDILYTDFVFYFQVAGLVLLVAMIGAIVLTLRHKPNVKRQSIPTQVARTPETA 193

Query: 188 IVMVKVKSGKGI 199
           I + KV++GKGI
Sbjct: 194 IEIKKVETGKGI 205


>gi|51473958|ref|YP_067715.1| NADH dehydrogenase subunit J [Rickettsia typhi str. Wilmington]
 gi|81610752|sp|Q68VV9|NUOJ_RICTY RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|51460270|gb|AAU04233.1| NADH dehydrogenase (ubiquinone) subunit J [Rickettsia typhi str.
           Wilmington]
          Length = 205

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 124/201 (61%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ + IISS  VV  +N +YSV  LIF F+NAAGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFTFINAAGLMILLGAEFLAMLLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAE--GELS 122
           V V FLF+IMMLDI+   A  + +     S FI  I+  +L++     ++ S +     S
Sbjct: 63  VAVLFLFVIMMLDINFNQAITKLRENLSLSIFITLIMFVDLVIT----VILSTKNINHSS 118

Query: 123 RLVFK-GNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            + F   NN+ N   IG VLYT +  P +++G IL ++MI  I L L+ R  +K QDI K
Sbjct: 119 NISFAIANNISNTKAIGSVLYTDFMLPFQMAGLILFVAMISCITLTLKKRERVKYQDIRK 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N  N I+M K    KG+
Sbjct: 179 QLSHNKGNVILMTKPILNKGV 199


>gi|84516723|ref|ZP_01004081.1| NADH dehydrogenase subunit J [Loktanella vestfoldensis SKA53]
 gi|84509191|gb|EAQ05650.1| NADH dehydrogenase subunit J [Loktanella vestfoldensis SKA53]
          Length = 201

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 121/194 (62%), Gaps = 2/194 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   +      V  RNP++SV  LI AF+++AGLF+ LGAEFVAM+ ++VYVGAV 
Sbjct: 8   FYLFAISTVTGGLFTVISRNPVHSVLWLILAFLSSAGLFVTLGAEFVAMLMIIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGELSRLV 125
           V FLF++MMLD+D    +    +    +  IG++    +  A     FS   EG ++  V
Sbjct: 68  VLFLFVVMMLDVDFAGLKAEMTKYLPLALLIGVVILMQLAMALGVWGFSEGVEGRIAAPV 127

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
            + +N   +G +LY QY    ++SG ILL++MIGAIVL LRHR DIKRQ++  Q+  +P 
Sbjct: 128 GELDNTRALGMLLYDQYFLLFQLSGLILLVAMIGAIVLTLRHRVDIKRQNVLNQMYRDPA 187

Query: 186 NSIVMVKVKSGKGI 199
            ++ +  VK G+G+
Sbjct: 188 KAMELRDVKPGQGL 201


>gi|259418750|ref|ZP_05742667.1| NADH-quinone oxidoreductase subunit j [Silicibacter sp. TrichCH4B]
 gi|259344972|gb|EEW56826.1| NADH-quinone oxidoreductase subunit j [Silicibacter sp. TrichCH4B]
          Length = 198

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 4   FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLV 125
           V FLF++MMLD+D    +    R    +  IG  IL   +I   S          LS+ +
Sbjct: 64  VLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVIAYGSWESAHDVAQNLSQPI 123

Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
               +N E +G ++Y QY    +++G ILL++MIGAIVL LRHR+D+KRQD+  Q+  +P
Sbjct: 124 PVDRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDVLAQMYRDP 183

Query: 185 DNSIVMVKVKSGKGI 199
             ++ +  +K G+G+
Sbjct: 184 AKAMELKDIKPGQGL 198


>gi|254450873|ref|ZP_05064310.1| NADH dehydrogenase i, j subunit [Octadecabacter antarcticus 238]
 gi|198265279|gb|EDY89549.1| NADH dehydrogenase i, j subunit [Octadecabacter antarcticus 238]
          Length = 197

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 87/196 (44%), Positives = 125/196 (63%), Gaps = 6/196 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F+   I    + V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 4   FYAFAVTTIGGGLMTVLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRLVF 126
           V FLF++MMLD+D    +    R    +  IG++   L+  A  F V+  ++G  +RLV 
Sbjct: 64  VLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVL--LMQLALAFGVWDYSDGFETRLVQ 121

Query: 127 KGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
              +VEN   +G VLY  Y    ++SG ILL++MIGAIVL LRHR D+KRQ++  Q+  +
Sbjct: 122 PIMDVENTKQLGLVLYDDYFLIFQLSGLILLVAMIGAIVLTLRHRTDVKRQNVMVQMSRD 181

Query: 184 PDNSIVMVKVKSGKGI 199
           P   + +  VK G+G+
Sbjct: 182 PAKQMELKDVKPGQGL 197


>gi|15893147|ref|NP_360861.1| NADH dehydrogenase subunit J [Rickettsia conorii str. Malish 7]
 gi|238650810|ref|YP_002916665.1| NADH dehydrogenase subunit J [Rickettsia peacockii str. Rustic]
 gi|20139034|sp|Q92G99|NUOJ_RICCN RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|15620356|gb|AAL03762.1| NADH dehydrogenase I chain J [Rickettsia conorii str. Malish 7]
 gi|238624908|gb|ACR47614.1| NADH dehydrogenase subunit J [Rickettsia peacockii str. Rustic]
          Length = 205

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 125/201 (62%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121
           V V FLF+IMMLD+       + K     S FI  I+ A+L++     +  + F++    
Sbjct: 63  VAVLFLFVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122

Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +      NN+ N   IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISK
Sbjct: 123 TI----TNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N +N+++M K    KG+
Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199


>gi|229587152|ref|YP_002845653.1| NADH dehydrogenase subunit J [Rickettsia africae ESF-5]
 gi|228022202|gb|ACP53910.1| NADH dehydrogenase I chain J [Rickettsia africae ESF-5]
          Length = 205

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 125/201 (62%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121
           V V FLF+IMMLD+       + K     S FI  I+ A+L++     +  + F++    
Sbjct: 63  VAVLFLFVIMMLDMHFNKKITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122

Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +      NN+ N   IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISK
Sbjct: 123 TI----TNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N +N+++M K    KG+
Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199


>gi|254718920|ref|ZP_05180731.1| NADH dehydrogenase subunit J [Brucella sp. 83/13]
 gi|265983907|ref|ZP_06096642.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella sp.
           83/13]
 gi|306838232|ref|ZP_07471084.1| NADH dehydrogenase subunit J [Brucella sp. NF 2653]
 gi|264662499|gb|EEZ32760.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella sp.
           83/13]
 gi|306406676|gb|EFM62903.1| NADH dehydrogenase subunit J [Brucella sp. NF 2653]
          Length = 205

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 120/192 (62%), Gaps = 12/192 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M
Sbjct: 18  IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 77

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127
           MLD+D        KRG L    +G     IL  ELI V AS  F     +G L    V  
Sbjct: 78  MLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVAT 133

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187
             N   +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ I  Q+   P+ +
Sbjct: 134 RTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETA 193

Query: 188 IVMVKVKSGKGI 199
           I + KV+ GKGI
Sbjct: 194 IEIRKVEMGKGI 205


>gi|34581183|ref|ZP_00142663.1| NADH dehydrogenase I chain J [Rickettsia sibirica 246]
 gi|28262568|gb|EAA26072.1| NADH dehydrogenase I chain J [Rickettsia sibirica 246]
          Length = 205

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 125/201 (62%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121
           V V FLF+IMMLD+       + K     S FI  I+ A+L++     +  + F++    
Sbjct: 63  VAVLFLFVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122

Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +      NN+ N   IG +LYT +  P +++G IL ++MI  I L L+ R  +KRQDISK
Sbjct: 123 TI----TNNISNTKAIGGILYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N +N+++M K    KG+
Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199


>gi|126727167|ref|ZP_01743004.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2150]
 gi|126703595|gb|EBA02691.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2150]
          Length = 204

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 128/197 (64%), Gaps = 5/197 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+ + + S  L V  R P++SV  LI AF ++AGLF+LLGAEF+AM+ ++VYVGAV 
Sbjct: 8   FYLFAIVTVGSGLLCVLARQPVHSVLWLICAFFSSAGLFVLLGAEFIAMLLVIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL-IVCASNFMVFSAEGELSRLV 125
           V FLF++MMLD+D    +    +    +  IG +L  EL +V  S  +   AEG  + + 
Sbjct: 68  VLFLFVVMMLDVDFAQLKAEMAKFMPVALLIGVVLLMELGLVFGSWTVSPDAEGLRAAVT 127

Query: 126 FKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              + V N   +G+++YT+Y Y  + +G ILL++MIGAIVL LRHR+D+KRQ I  Q+  
Sbjct: 128 PALDEVHNTAALGQLIYTKYIYLFQAAGLILLVAMIGAIVLTLRHRKDVKRQVIRDQILR 187

Query: 183 NPDNSIVMVKVKSGKGI 199
           +P +++ +  VK G+G+
Sbjct: 188 DPKDAMEIKDVKPGQGL 204


>gi|157826242|ref|YP_001493962.1| NADH dehydrogenase subunit J [Rickettsia akari str. Hartford]
 gi|157800200|gb|ABV75454.1| NADH dehydrogenase subunit J [Rickettsia akari str. Hartford]
          Length = 205

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 121/201 (60%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N IYSV  LIF F+N AGL +LLGAEF+AMI +V+YVGA
Sbjct: 3   IFFYLFATLITISSLCVVLSKNSIYSVLCLIFTFINGAGLMILLGAEFLAMILIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121
           V V FLF+IMMLD+       + K     S FI  I+  +LI+     +  + FS++   
Sbjct: 63  VAVLFLFVIMMLDMHFNKTITQLKENLALSIFIALIMFCDLIIIILLGTKNINFSSDISF 122

Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +      NN+ N   IG VLYT +  P +++G IL ++MI  I L L+ R  +K QDI+K
Sbjct: 123 AI----TNNISNTKAIGNVLYTNFMLPFQMAGLILFVAMIACITLTLKKREGVKHQDITK 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N  N ++M K    KG+
Sbjct: 179 QLSHNKGNVVLMTKPTLNKGV 199


>gi|67459647|ref|YP_247271.1| NADH dehydrogenase subunit J [Rickettsia felis URRWXCal2]
 gi|75535957|sp|Q4UK29|NUOJ_RICFE RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|67005180|gb|AAY62106.1| NADH dehydrogenase I chain J [Rickettsia felis URRWXCal2]
          Length = 205

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/204 (43%), Positives = 122/204 (59%), Gaps = 17/204 (8%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVC------ASNFM---VF 115
           V V FLF+IMMLD+       + K    L SF   I+ A+L+          NF+    F
Sbjct: 63  VAVLFLFVIMMLDMHFNKTITQLKENLALSSFIALIMFADLVTIILLGTKNINFISDVSF 122

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   ++S       N + IGKVLYT +  P +++G IL ++MI  I L L+ R  +K QD
Sbjct: 123 TITNDIS-------NTKAIGKVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKHQD 175

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I+KQL  N  N ++M K    KG+
Sbjct: 176 ITKQLSHNKSNVVLMTKPTLNKGV 199


>gi|83858405|ref|ZP_00951927.1| NADH dehydrogenase subunit J [Oceanicaulis alexandrii HTCC2633]
 gi|83853228|gb|EAP91080.1| NADH dehydrogenase subunit J [Oceanicaulis alexandrii HTCC2633]
          Length = 202

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 126/199 (63%), Gaps = 11/199 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S  A++S+ +VV  +NP+ +V  LI AF +AAGLF+LLGAEF+AMI ++VYVGAV 
Sbjct: 7   FYILSATAVLSALMVVIAKNPVRAVLFLILAFFSAAGLFVLLGAEFLAMILVIVYVGAVA 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSAEGELSRL 124
           V FLF++MMLDID      + K GF+    +G    LA   I+  +     SA+   + L
Sbjct: 67  VLFLFVVMMLDIDFA----QLKEGFISHAPLGGVVALALAGILAMTGLSWVSADSASAAL 122

Query: 125 VFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                    NV  +G ++Y +Y    +I+G +LL++MIGAIVL LRHR  +KRQD+  Q+
Sbjct: 123 QSPTPDDMTNVAALGALIYDRYVLFFQIAGLVLLVAMIGAIVLTLRHRDGVKRQDMHAQV 182

Query: 181 ESNPDNSIVMVKVKSGKGI 199
               ++S+ +V +KSG+GI
Sbjct: 183 NRKREDSVEIVDIKSGEGI 201


>gi|126740390|ref|ZP_01756078.1| NADH dehydrogenase subunit J [Roseobacter sp. SK209-2-6]
 gi|126718526|gb|EBA15240.1| NADH dehydrogenase subunit J [Roseobacter sp. SK209-2-6]
          Length = 200

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGEL--SRL 124
           V FLF++MMLD+D    +    +    +  IG ++  + ++   ++       EL     
Sbjct: 66  VLFLFVVMMLDVDFAALKAEMAQYMPLALLIGLVILMQFVMAYGSWESAHGASELLAQPT 125

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
               +N E +G ++Y QY    ++SG ILL++MIGAI+L LRHR+D+KRQD+  Q+  +P
Sbjct: 126 PADKHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIMLTLRHRQDVKRQDVLAQMYRDP 185

Query: 185 DNSIVMVKVKSGKGI 199
             ++ +  VK G+G+
Sbjct: 186 AKAMELKDVKPGQGL 200


>gi|85703192|ref|ZP_01034296.1| NADH dehydrogenase subunit J [Roseovarius sp. 217]
 gi|85672120|gb|EAQ26977.1| NADH dehydrogenase subunit J [Roseovarius sp. 217]
          Length = 202

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 129/204 (63%), Gaps = 7/204 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FYLF+   +I     V  RNP++SV  LI +F++AAGLF+LLGAEFVAM+ ++
Sbjct: 1   MTIAAMAFYLFAVSLLIGGLFTVISRNPVHSVLWLILSFISAAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D    +    +    +  IG IL  +  +   N+ +  A+G
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMAKYMPLALLIGVILLMQFGLVFGNWQM--ADG 118

Query: 120 -ELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            E +R     + VEN   +G +LY  Y    +++G ILL++MIGAIVL LRHR D+KRQD
Sbjct: 119 AEAARRSVTPDGVENTAALGLLLYDTYFILFQLAGLILLVAMIGAIVLTLRHRTDVKRQD 178

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+  +P  ++ +  VK G+G+
Sbjct: 179 VLAQMYRDPAKAMELRDVKPGQGL 202


>gi|87200305|ref|YP_497562.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135986|gb|ABD26728.1| NADH dehydrogenase subunit J [Novosphingobium aromaticivorans DSM
           12444]
          Length = 205

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 128/206 (62%), Gaps = 13/206 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q   FYLF+ + I S  + +  RNP++SV  LI AF NAAGL +L GAEF+AM+ ++VY
Sbjct: 2   IQVFAFYLFATLCIFSGAVTILARNPVHSVLWLILAFFNAAGLMVLAGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFM 113
           VGAV V FLF++MMLDID   AE R   GF+ +F +G+  A          L+V  S  +
Sbjct: 62  VGAVAVLFLFVVMMLDIDF--AELRA--GFIKNFPLGMALAVVLFVELFVGLVVRGSGAV 117

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                   +      +N+E+IG +LY++Y +  E +G +LL++MIGAIVL  R R D + 
Sbjct: 118 ALGKADGSAMQAAGASNIESIGALLYSRYLFLFEAAGIVLLVAMIGAIVLTHRQRTDTRG 177

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q++SKQ+   P+++ V ++ + GKG+
Sbjct: 178 QNVSKQVARRPEDATVNLQPEVGKGV 203


>gi|239831695|ref|ZP_04680024.1| NADH-quinone oxidoreductase subunit J [Ochrobactrum intermedium LMG
           3301]
 gi|239823962|gb|EEQ95530.1| NADH-quinone oxidoreductase subunit J [Ochrobactrum intermedium LMG
           3301]
          Length = 215

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 124/192 (64%), Gaps = 12/192 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M
Sbjct: 28  IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 87

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127
           MLD+D        KRG L    +G     IL  ELI V ASN F     +G +    + +
Sbjct: 88  MLDVDFS----ELKRGALQYAPVGALVGLILLGELIFVFASNMFAPKLGQGAVPIPNIAE 143

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187
            +N   +G +LYT + +  +++G +LL++MIGAIVL LRH+ ++KRQ I  Q+   P+ +
Sbjct: 144 RSNTAALGDILYTDFVFYFQVAGLVLLVAMIGAIVLTLRHKPNVKRQSIPAQVARTPETA 203

Query: 188 IVMVKVKSGKGI 199
           I + +V++GKGI
Sbjct: 204 IEIKQVETGKGI 215


>gi|157964938|ref|YP_001499762.1| NADH dehydrogenase subunit J [Rickettsia massiliae MTU5]
 gi|157844714|gb|ABV85215.1| NADH dehydrogenase I chain J [Rickettsia massiliae MTU5]
          Length = 208

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 124/201 (61%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 6   IFFYLFATLITISSLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 65

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121
           V V FLF+IMMLD+       + K     S  I  I+ A+L++     +  + F++    
Sbjct: 66  VAVLFLFVIMMLDMHFNKTITQLKENLALSILIALIMFADLVIIILLGTKNINFNSNVSF 125

Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +      NN+ N   IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISK
Sbjct: 126 AI----TNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 181

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N +N+++M K    KG+
Sbjct: 182 QLRHNKENTVLMTKPILNKGV 202


>gi|149202656|ref|ZP_01879628.1| NADH dehydrogenase subunit J [Roseovarius sp. TM1035]
 gi|149143938|gb|EDM31972.1| NADH dehydrogenase subunit J [Roseovarius sp. TM1035]
          Length = 202

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 127/204 (62%), Gaps = 7/204 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FYLF+   +    + V  RNP++SV  LI +F++AAGLF+LLGAEFVAM+ ++
Sbjct: 1   MTFAAMAFYLFAVSLLTGGLMTVISRNPVHSVLWLILSFISAAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D    +    +    +  IG IL  +  +   N+ +  A+G
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMAKYMPLALLIGVILLMQFGLAFGNWEM--ADG 118

Query: 120 -ELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            E +R       VEN   +G +LY  Y    ++SG ILL++MIGAIVL LRHR D+KRQD
Sbjct: 119 AEAARRAVTPEGVENTAALGLLLYDTYFILFQLSGLILLVAMIGAIVLTLRHRTDVKRQD 178

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+  +P  ++ +  VK G+G+
Sbjct: 179 VLAQMYRDPAKAMELRDVKPGQGL 202


>gi|254439778|ref|ZP_05053272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Octadecabacter antarcticus 307]
 gi|198255224|gb|EDY79538.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Octadecabacter antarcticus 307]
          Length = 201

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 120/194 (61%), Gaps = 2/194 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F+   I    + V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 8   FYAFAATTIGGGLMTVLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLV 125
           V FLF++MMLD+D    +    R    +  IG++    +  A     +S   E  L++ +
Sbjct: 68  VLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVLLMQLAMAFGVWDYSDGFETRLAQPI 127

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
               N + +G V+Y  Y    ++SG ILL++MIGAIVL LRHR D+KRQ++  Q+  +P 
Sbjct: 128 VDVENTKQLGLVIYDDYFLIFQLSGLILLVAMIGAIVLTLRHRTDVKRQNVMVQMSRDPA 187

Query: 186 NSIVMVKVKSGKGI 199
            ++ +  VK G+G+
Sbjct: 188 KAMELKDVKPGQGL 201


>gi|254466369|ref|ZP_05079780.1| NADH dehydrogenase i, j subunit [Rhodobacterales bacterium Y4I]
 gi|206687277|gb|EDZ47759.1| NADH dehydrogenase i, j subunit [Rhodobacterales bacterium Y4I]
          Length = 200

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 120/197 (60%), Gaps = 7/197 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   I      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISTITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V FLF++MMLD+D    +    R    +  IG++     V A  F V+    +   L+  
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMA--FGVWETAHQAPELLAN 123

Query: 128 G-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                 +N E +G ++Y QY    +++G ILL++MIGAIVL LRHR D+KRQD+  Q+  
Sbjct: 124 PVPADRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRTDVKRQDVVAQMMR 183

Query: 183 NPDNSIVMVKVKSGKGI 199
           +P  ++ +  VK G+G+
Sbjct: 184 DPAKAMELRDVKPGQGL 200


>gi|114327957|ref|YP_745114.1| NADH-quinone oxidoreductase chain J [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316131|gb|ABI62191.1| NADH-quinone oxidoreductase chain J [Granulibacter bethesdensis
           CGDNIH1]
          Length = 247

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 132/199 (66%), Gaps = 5/199 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FY+FS + I+S  +VV+ RNP+++V  LI AF NAAGLFLL GAEF+AMI ++VYVG
Sbjct: 4   AIAFYVFSAILIVSGAMVVSARNPVHAVLFLILAFFNAAGLFLLTGAEFLAMILVIVYVG 63

Query: 65  AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           AV V FLF++MML+I+  EV +  ++   +G+   G+L  EL +    + V      L R
Sbjct: 64  AVAVLFLFVVMMLNINFAEVRDGWQRYAPVGAAIGGVLLVELAMVLGGWQVAPGASAL-R 122

Query: 124 LVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
              + ++V+N   +G+++YT Y    +++G ILL++MIGAIVL LR R+  + Q+I++Q+
Sbjct: 123 FSPRPDHVQNTVALGQIVYTHYVMLFQMAGLILLVAMIGAIVLTLRDRKTSRHQNIAEQV 182

Query: 181 ESNPDNSIVMVKVKSGKGI 199
               ++++ +V    G+GI
Sbjct: 183 NRRIEDTLQLVNAPVGQGI 201


>gi|92117734|ref|YP_577463.1| NADH dehydrogenase subunit J [Nitrobacter hamburgensis X14]
 gi|91800628|gb|ABE63003.1| NADH dehydrogenase subunit J [Nitrobacter hamburgensis X14]
          Length = 212

 Score =  147 bits (372), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +V++ RNP++SV  LI AFVNAAGLF+L+GAEF+AMI +V
Sbjct: 1   MILPALFFYLFAGVCVASAAMVISSRNPVHSVLFLILAFVNAAGLFILMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAE 118
           VYVGAV V FLF+IMMLD++   AE R+  GFL    +G++ A + +     +V  ++  
Sbjct: 61  VYVGAVAVLFLFVIMMLDVNF--AELRE--GFLEYLPLGLVIAAIFLLELLLVVGGWTLN 116

Query: 119 GELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             +++ +        +N E IG VLYT+Y +  +++G +LL++M+GAIVL LRHR  +KR
Sbjct: 117 PTVTKSITAAIPGDVSNTEAIGLVLYTKYIHYFQLAGMVLLVAMVGAIVLTLRHRASVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDI+ Q    P+ ++ + KV SG+G+
Sbjct: 177 QDINVQNARTPEMAMSVRKVASGRGL 202


>gi|86749701|ref|YP_486197.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris HaA2]
 gi|86572729|gb|ABD07286.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
          Length = 212

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/211 (43%), Positives = 132/211 (62%), Gaps = 21/211 (9%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  LFFYL++  AI ++ +VV  RNP++S   LI  FVNAAG+F+L+GAEF+AMI +V
Sbjct: 1   MSMPVLFFYLYAGAAIAAAVMVVFARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL------------AAELIVC 108
           VYVGAV V FLF+IMMLD+D      R + GFL     G+L            A   ++ 
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFS----RLREGFLEYLPFGLLIGFIFLAELLLLAGGWVIT 116

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            +     +A      +    +N E +G VLYT+Y +  +ISG ILL++MIGAIVL LRH+
Sbjct: 117 PTVTKTITAP-----IPTDVSNTEALGLVLYTRYIHYFQISGVILLVAMIGAIVLTLRHK 171

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           + +KRQ+IS+Q   + + ++ + KVK G+G+
Sbjct: 172 KSVKRQNISEQNARSKETAMAIRKVKPGQGL 202


>gi|158423301|ref|YP_001524593.1| NADH ubiquinone oxidoreductase chain J protein [Azorhizobium
           caulinodans ORS 571]
 gi|158330190|dbj|BAF87675.1| NADH ubiquinone oxidoreductase chain J protein [Azorhizobium
           caulinodans ORS 571]
          Length = 202

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 129/190 (67%), Gaps = 13/190 (6%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S+F+V++ RNP+YSV  LI AFVNAAGLF+LLG EF+A+I +VVYVGAV V FLF++MML
Sbjct: 18  SAFMVISSRNPVYSVLFLILAFVNAAGLFILLGVEFLALILVVVYVGAVAVLFLFVVMML 77

Query: 78  DID-IEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVFSAEGELSRLV--FKGN 129
           D+D +E+     ++GFL    +G     I  AEL++    +         +  V  +   
Sbjct: 78  DVDFVEL-----RQGFLQYLPVGAIVGLIFLAELVLVVGTWAAGPGVTVATNAVMTYPRG 132

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
           N   +G+VLYT Y Y  +I+GF+LL++MIGAIVL LRH+ ++KRQ+IS Q+   P+ ++ 
Sbjct: 133 NTHALGQVLYTDYIYFFQIAGFVLLVAMIGAIVLTLRHKPNVKRQNISAQVARTPETAME 192

Query: 190 MVKVKSGKGI 199
           +VKVK G+GI
Sbjct: 193 VVKVKPGQGI 202


>gi|148255904|ref|YP_001240489.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. BTAi1]
 gi|146408077|gb|ABQ36583.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. BTAi1]
          Length = 212

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 135/206 (65%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +V+  +NP++SV  LI AFVNA+GLF+L+GAEF+AMI +V
Sbjct: 1   MILPALFFYLFAAVCVASAVMVIVSKNPVHSVLYLILAFVNASGLFVLMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFMVF 115
           VYVGAV V FLF+IMMLD+D        + GFL    IG++       EL++  S +++ 
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFT----ELREGFLQYMPIGLVIGGIFLFELLLTVSYWVIN 116

Query: 116 SAEGELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
               +        N  N E +G VLYT+Y +  ++SG ILL++MIGAIVL LRH+  +KR
Sbjct: 117 PTTPKAITAAIPTNVTNTEALGLVLYTKYIHYFQLSGMILLVAMIGAIVLTLRHKVSVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDI+ Q    P+ ++ + KV  G+G+
Sbjct: 177 QDINVQNARTPEMAMAVRKVAVGQGL 202


>gi|162148802|ref|YP_001603263.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545450|ref|YP_002277679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787379|emb|CAP56974.1| putative NADH-quinone oxidoreductase chain J [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533127|gb|ACI53064.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 253

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 127/200 (63%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+F+ + ++S+ +VV+ RNP++SV  LI AF NAAGLFL+ GAEF+AMI ++VY
Sbjct: 2   MAQIVFYVFATVLVLSAGMVVSARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMILVIVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD+   E+ E  ++    G+    +L AEL +   ++ V     ++
Sbjct: 62  VGAVAVLFLFVVMMLDVRFTEMREGLQRYAPFGAAVGAVLFAELALAFGHWQVARNIADV 121

Query: 122 SRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           S LV      N   +G VLYT Y +  E  G +LL++MIGAIVL LR R   +RQ+I +Q
Sbjct: 122 SHLVPTPGRTNTAALGDVLYTHYIFLFESCGLVLLVAMIGAIVLTLRERPVGRRQNIERQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
            E    +S+ M+ +  G+G+
Sbjct: 182 HERTAADSLDMMALPLGQGV 201


>gi|89053681|ref|YP_509132.1| NADH dehydrogenase subunit J [Jannaschia sp. CCS1]
 gi|88863230|gb|ABD54107.1| NADH dehydrogenase subunit J [Jannaschia sp. CCS1]
          Length = 205

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 123/204 (60%), Gaps = 18/204 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   +      VT +NP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 8   FYLFALSVVAGGLFTVTSKNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLMIIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFI-------GILAAELIVCASNFMVF 115
           V FLF++MMLD+D      E+A+     G +G   +       G+  A   V  S   + 
Sbjct: 68  VLFLFVVMMLDVDFAELKAEMAKYVPLGGLIGVILLMQLTLAFGVWEAADGVDISATPIG 127

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           + EG         +N + +G ++Y  Y    ++SG ILL++M+GAIVL LRHR D+KRQD
Sbjct: 128 TPEGA------GDHNTQALGLIVYDDYFLAFQLSGLILLVAMVGAIVLTLRHRVDVKRQD 181

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+  +P  ++ +  VK G+G+
Sbjct: 182 VVAQMMRDPAKAMELKDVKPGQGL 205


>gi|255263382|ref|ZP_05342724.1| NADH-quinone oxidoreductase subunit j [Thalassiobium sp. R2A62]
 gi|255105717|gb|EET48391.1| NADH-quinone oxidoreductase subunit j [Thalassiobium sp. R2A62]
          Length = 201

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/196 (42%), Positives = 124/196 (63%), Gaps = 6/196 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F+   I      V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 8   FYAFAVSTIAGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRLVF 126
           V FLF++MMLD+D    +    +       IG++   L+  +  F V+  +EG  +RL  
Sbjct: 68  VLFLFVVMMLDVDFAELKAEMSKYLPLGLLIGVIV--LMQLSLAFGVWDYSEGYQTRLAA 125

Query: 127 -KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
            +G+  N E +G +LY +Y    +++G ILL++MIGAIVL LRHR D+KRQ+I  Q+  +
Sbjct: 126 PEGDAMNTEALGLLLYDKYILLFQLAGLILLVAMIGAIVLTLRHREDVKRQNIVSQILRD 185

Query: 184 PDNSIVMVKVKSGKGI 199
           P   + +  VK G+G+
Sbjct: 186 PAKQMKLKDVKPGQGL 201


>gi|258542713|ref|YP_003188146.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633791|dbj|BAH99766.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636850|dbj|BAI02819.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639903|dbj|BAI05865.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642959|dbj|BAI08914.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646014|dbj|BAI11962.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649067|dbj|BAI15008.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652054|dbj|BAI17988.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655111|dbj|BAI21038.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-12]
          Length = 243

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 129/200 (64%), Gaps = 4/200 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L FY+F+ + + S+ +V++ RNP++SV  LI AF NAAGLFL+ GAEF+AM+ ++VY
Sbjct: 8   MAQLVFYVFATVLLFSAVMVISARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMLLVIVY 67

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--G 119
           VGAV V FLF++MMLDID   + E  +K   LG    G+L AEL++  SN+ +  A    
Sbjct: 68  VGAVAVLFLFVVMMLDIDFSSLREGFQKHAPLGVCVGGVLFAELLMAFSNWKMAPANIVA 127

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            L+  V +  N E +G V+YT Y +  +  G +LL++MIGAIVL LR R   +RQ+I +Q
Sbjct: 128 PLNP-VPQLTNTEALGTVIYTHYVFLFQACGLVLLVAMIGAIVLTLRERATGRRQNIDQQ 186

Query: 180 LESNPDNSIVMVKVKSGKGI 199
                + ++ +V++  G+ +
Sbjct: 187 HARTVEETLELVQLPLGENV 206


>gi|165933782|ref|YP_001650571.1| NADH:ubiquinone oxidoreductase subunit J [Rickettsia rickettsii
           str. Iowa]
 gi|165908869|gb|ABY73165.1| NADH-quinone oxidoreductase chain J [Rickettsia rickettsii str.
           Iowa]
          Length = 205

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 124/201 (61%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121
           V + FL +IMMLD+       + K     S FI  I+ A+L++     +  + F++    
Sbjct: 63  VALLFLSVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122

Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +      NN+ N   IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISK
Sbjct: 123 TI----TNNISNTKAIGSVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N +N+++M K    KG+
Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199


>gi|329114687|ref|ZP_08243446.1| NADH-quinone oxidoreductase subunit J [Acetobacter pomorum DM001]
 gi|326696167|gb|EGE47849.1| NADH-quinone oxidoreductase subunit J [Acetobacter pomorum DM001]
          Length = 243

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 128/200 (64%), Gaps = 4/200 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L FY+F+ + + S+ +V++ RNP++SV  LI AF NAAGLFL+ GAEF+AM+ ++VY
Sbjct: 8   MAQLVFYVFATVLLFSAVMVISARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMLLVIVY 67

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--G 119
           VGAV V FLF++MMLDID   + E  +K   LG    G+L AEL++  SN+ +  A    
Sbjct: 68  VGAVAVLFLFVVMMLDIDFSSLREGFQKHAPLGVCVGGVLFAELLMAFSNWKMAPANIVA 127

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            L+    +  N E +G V+YT Y +  +  G +LL++MIGAIVL LR R   +RQ+I KQ
Sbjct: 128 PLNP-APQLTNTEALGTVIYTHYVFLFQACGLVLLVAMIGAIVLTLRERATGRRQNIDKQ 186

Query: 180 LESNPDNSIVMVKVKSGKGI 199
                + ++ +V++  G+ +
Sbjct: 187 HARTVEETLELVQLPLGENV 206


>gi|189184496|ref|YP_001938281.1| NADH dehydrogenase subunit J [Orientia tsutsugamushi str. Ikeda]
 gi|189181267|dbj|BAG41047.1| NADH dehydrogenase I chain J [Orientia tsutsugamushi str. Ikeda]
          Length = 202

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/196 (43%), Positives = 127/196 (64%), Gaps = 3/196 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           LFFYLFS +A++ S  V+T +NP+Y+V  LIF F N +GL +LLGAEF+A + ++VY GA
Sbjct: 2   LFFYLFSVLALLGSIGVITSKNPVYAVLWLIFVFCNTSGLLILLGAEFLAFLLVIVYAGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V + FLF++MML+I  +     K R  L      I++   I+  S  +V    G    + 
Sbjct: 62  VAILFLFVVMMLNIKSDNLVLVKTRTILNIPIYVIISFIFIIDLSIIIVMGF-GNYCPIH 120

Query: 126 FKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           ++ NN  ++ IG+VLYT+YA P ++SG ILL++MIG +VL +R R  +KRQD   Q+  N
Sbjct: 121 YEENNLDIKAIGRVLYTEYALPFQLSGIILLIAMIGCVVLTVRKRSGVKRQDHYSQINRN 180

Query: 184 PDNSIVMVKVKSGKGI 199
            ++SI +VKV+  KGI
Sbjct: 181 RNSSIQVVKVEVNKGI 196


>gi|157829056|ref|YP_001495298.1| NADH dehydrogenase subunit J [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801537|gb|ABV76790.1| NADH dehydrogenase subunit J [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 205

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 124/201 (61%), Gaps = 11/201 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121
           V + FL +IMMLD+       + K     S FI  I+ A+L++     +  + F++    
Sbjct: 63  VALLFLSVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122

Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +      NN+ N   IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISK
Sbjct: 123 TI----TNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           QL  N +N+++M K    KG+
Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199


>gi|126736050|ref|ZP_01751794.1| NADH dehydrogenase (quinone) [Roseobacter sp. CCS2]
 gi|126714607|gb|EBA11474.1| NADH dehydrogenase (quinone) [Roseobacter sp. CCS2]
          Length = 201

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 119/194 (61%), Gaps = 2/194 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   +    + V  RNP++SV  LI AF+++AGLF+ LGAEFVAM+ ++VYVGAV 
Sbjct: 8   FYLFAVTTVTGGLMTVVSRNPVHSVLWLILAFLSSAGLFVTLGAEFVAMLLIIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGELSRLV 125
           V FLF++MMLD+D    +    +       IG++    +  A     F+   EG ++   
Sbjct: 68  VLFLFVVMMLDVDFAELKAEMTKYLPLGLLIGVVILMQLALAFGVWGFADGVEGRIAAPT 127

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
              +N   +G ++Y +Y    ++SG ILL++MIGAIVL LRHR DIKRQ++  Q+  +P 
Sbjct: 128 GDLDNTRALGLLIYDKYILLFQLSGLILLVAMIGAIVLTLRHRVDIKRQNVLAQMYRDPA 187

Query: 186 NSIVMVKVKSGKGI 199
            ++ +  VK G+G+
Sbjct: 188 KAMELKDVKPGQGL 201


>gi|260428617|ref|ZP_05782596.1| NADH-quinone oxidoreductase subunit j [Citreicella sp. SE45]
 gi|260423109|gb|EEX16360.1| NADH-quinone oxidoreductase subunit j [Citreicella sp. SE45]
          Length = 200

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 124/198 (62%), Gaps = 9/198 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS   I+     V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFSLCTILGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS----AEGELSR 123
           V FLF++MMLD+D         +    +  IG++   L+     F  +     A G+LS 
Sbjct: 66  VLFLFVVMMLDVDFAELRAGMAKYMPLALLIGVVI--LMQLGMAFGAWETSDLAAGQLSA 123

Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
            V  G+  N   +G ++Y +Y    +++G ILL++MIGAIVL LRHR+D+KRQ++  Q+ 
Sbjct: 124 PV-PGDMQNTAALGVLIYDRYFLAFQLAGLILLVAMIGAIVLTLRHRQDVKRQNVLAQMW 182

Query: 182 SNPDNSIVMVKVKSGKGI 199
            +P  ++ +  VK G+G+
Sbjct: 183 RDPAKAMELKDVKPGQGL 200


>gi|254419970|ref|ZP_05033694.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Brevundimonas sp. BAL3]
 gi|196186147|gb|EDX81123.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Brevundimonas sp. BAL3]
          Length = 208

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 136/204 (66%), Gaps = 10/204 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + FYL +  A++S  LVVT RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +VVY
Sbjct: 2   LQGIAFYLLAATAVVSGLLVVTARNPVHSVLWLILAFFSAAGLFVLLGAEFLAMLLVVVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD+D +++ E   +   +G+    +L AE+I+ +S  +     G  
Sbjct: 62  VGAVAVLFLFVVMMLDVDFLKLREGYARYLPIGAVIAAVLLAEMILVSSAVI---QGGAT 118

Query: 122 SRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           + L   G      +NVE IG+VLYT Y Y  + +G +LL++MIGAI L LRH+  IKRQ+
Sbjct: 119 AGLAGPGAPDPDMSNVEAIGRVLYTDYIYFFQAAGIVLLIAMIGAITLTLRHKPHIKRQN 178

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I+ Q+  +   ++ +  V++G+G+
Sbjct: 179 ITDQVNRSAAKAMEVKSVQTGQGV 202


>gi|114765007|ref|ZP_01444154.1| NADH dehydrogenase subunit J [Pelagibaca bermudensis HTCC2601]
 gi|114542554|gb|EAU45579.1| NADH dehydrogenase subunit J [Roseovarius sp. HTCC2601]
          Length = 202

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   I+     V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFALCTIVGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS----AEGELSR 123
           V FLF++MMLD+D         +    +  IG++   L+     F V+     A  +LS 
Sbjct: 66  VLFLFVVMMLDVDFAELRAGMAKYMPLALLIGVIL--LMQLGMAFGVWEVSEIAASQLSA 123

Query: 124 ---LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
              L  +  N   +G +LY +Y    +++G ILL++MIGAIVL LRHR+D+KRQ++  Q+
Sbjct: 124 PTPLATETQNTAALGLLLYDRYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQNVLAQM 183

Query: 181 ESNPDNSIVMVKVKSGKGI 199
             +P  ++ +  VK G+G+
Sbjct: 184 YRDPKKAMELRDVKPGQGL 202


>gi|316933902|ref|YP_004108884.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Rhodopseudomonas palustris DX-1]
 gi|315601616|gb|ADU44151.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodopseudomonas palustris DX-1]
          Length = 212

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 133/206 (64%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  LFFYL++ +AI ++ +VV  RNP++S   LI  FVNAAG+F+L+GAEF+AMI +V
Sbjct: 1   MSMPVLFFYLYAGVAIAAAVMVVFARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG----SFFIGILAAELIVCASNFMVFS 116
           VYVGAV V FLF+IMMLD+D        + GFL        IG++    ++  +   V S
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDYS----ELREGFLEYLPFGLLIGVIFLAELLLLAGGWVIS 116

Query: 117 ---AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
               +   + +    +N E +G VLYT+Y +  ++SG ILL++M+GAIVL LRH++ +KR
Sbjct: 117 PTVTKTVTAPIPADVSNTEALGLVLYTRYIHYFQVSGMILLVAMVGAIVLTLRHKKKVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDI+ Q   + + ++ +  VK+G+G+
Sbjct: 177 QDIAAQNARSKETAMAIRHVKTGQGL 202


>gi|39936006|ref|NP_948282.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris CGA009]
 gi|192291661|ref|YP_001992266.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris TIE-1]
 gi|39649860|emb|CAE28382.1| NADH-ubiquinone dehydrogenase chain J [Rhodopseudomonas palustris
           CGA009]
 gi|192285410|gb|ACF01791.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodopseudomonas palustris TIE-1]
          Length = 212

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 133/206 (64%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  LFFYL++ +AI ++ +VV  RNP++S   LI  FVNAAG+F+L+GAEF+AMI +V
Sbjct: 1   MSMPVLFFYLYAGVAIAAAVMVVVARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG----SFFIGILAAELIVCASNFMVFS 116
           VYVGAV V FLF+IMMLD+D      + + GFL        IG +    ++  +   V S
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDYS----QLREGFLEYLPFGLLIGFIFLAELLLLAGGWVIS 116

Query: 117 ---AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
               +   S +    +N E +G VLYT+Y +  ++SG +LL++M+GAIVL LRH++ +KR
Sbjct: 117 PTVTKAVTSPIPTGVSNTEALGLVLYTRYIHYFQVSGMVLLVAMVGAIVLTLRHKKKVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDI+ Q   + + ++ +  VK+G+G+
Sbjct: 177 QDIAAQNARSKETAMAIRHVKTGQGL 202


>gi|254501714|ref|ZP_05113865.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Labrenzia alexandrii DFL-11]
 gi|222437785|gb|EEE44464.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Labrenzia alexandrii DFL-11]
          Length = 204

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/209 (44%), Positives = 145/209 (69%), Gaps = 15/209 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++++LFFYLF+ + + S+F+V+  RNP+ SV  LI AFVN+AGLF+LLGAE++A++ +V
Sbjct: 1   MILKALFFYLFAGVTVASAFMVIAARNPVTSVLFLILAFVNSAGLFILLGAEYLALLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMV 114
           VYVGAV V FLF++MMLD+D +E+     ++GFL    +G     IL  EL++    +++
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVEL-----RQGFLQYLPVGGLVGLILLVELLMGFGAWVI 115

Query: 115 F----SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                +   E +  + +  N+E +G VLYT+Y Y  +++G ILL++MIGAIVL LRH+ +
Sbjct: 116 LPELTANTVEPTPPLTEMTNIEALGSVLYTKYIYFFQVAGLILLVAMIGAIVLTLRHKPN 175

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           +KRQDI  Q+    + ++ + KV++GKGI
Sbjct: 176 VKRQDIPTQVGRTREAAVEVRKVETGKGI 204


>gi|118590028|ref|ZP_01547432.1| NADH dehydrogenase subunit J [Stappia aggregata IAM 12614]
 gi|118437525|gb|EAV44162.1| NADH dehydrogenase subunit J [Stappia aggregata IAM 12614]
          Length = 229

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/209 (44%), Positives = 143/209 (68%), Gaps = 15/209 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++++LFFYLF+ + + S+F+V+  RNP+ SV  LI AFVN+AGLF+LLGAE++A++ +V
Sbjct: 26  MILKALFFYLFAGVTLASAFMVIASRNPVTSVLFLILAFVNSAGLFILLGAEYLALLLVV 85

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFM- 113
           VYVGAV V FLF++MMLD+D +E+     ++GFL    +G     IL  EL++    ++ 
Sbjct: 86  VYVGAVAVLFLFVVMMLDVDFVEL-----RQGFLQYLPVGALVGVILLVELLMGLGAWVI 140

Query: 114 ---VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              V     E    +   +N++ IG VLYT+Y Y  +++G +LL++MIGAIVL LRH+ +
Sbjct: 141 APGVLGHGAEPMPALSDVSNIQAIGSVLYTKYIYFFQVAGLVLLVAMIGAIVLTLRHKPN 200

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           +KRQ I  Q+  N + SI + KV++GKGI
Sbjct: 201 VKRQSIPDQVARNRETSIEVRKVETGKGI 229


>gi|83942658|ref|ZP_00955119.1| NADH dehydrogenase I, J subunit [Sulfitobacter sp. EE-36]
 gi|83953897|ref|ZP_00962618.1| NADH dehydrogenase subunit J [Sulfitobacter sp. NAS-14.1]
 gi|83841842|gb|EAP81011.1| NADH dehydrogenase subunit J [Sulfitobacter sp. NAS-14.1]
 gi|83846751|gb|EAP84627.1| NADH dehydrogenase I, J subunit [Sulfitobacter sp. EE-36]
          Length = 200

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 122/200 (61%), Gaps = 13/200 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   I      V  RNP++SV  LI +F++AAGLF+LL AEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISVIAGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLNAEFVAMLLIIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGE 120
           V FLF++MMLD+D    +    R    +  IG     L++     M F       +AEG 
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAFGAWDANSAAEGL 120

Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            ++++    +N   +G +LY QY    ++SG ILL++MIGAIVL LRHR D+KRQ++  Q
Sbjct: 121 RTQVITDEVHNTAALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRADVKRQNVVDQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPKLAMKLNDVKPGQGL 200


>gi|163746213|ref|ZP_02153572.1| NADH dehydrogenase subunit J [Oceanibulbus indolifex HEL-45]
 gi|161380958|gb|EDQ05368.1| NADH dehydrogenase subunit J [Oceanibulbus indolifex HEL-45]
          Length = 200

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 3/195 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   I      V  RNP++SV  LI +F++AAGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFAISVITGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLGAEFVAMLLVIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V FLF++MMLD+D    +    R    +  I ++     V A      SA  E  RL   
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMARYMPLALLIALVILMQFVMAFGAWEQSAAAEGLRLNTI 125

Query: 128 GN---NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
                N E +G +LY +Y    +++G ILL++MIGAIVL LRHR+D+KRQD+  Q+  +P
Sbjct: 126 DPDRFNTEALGLLLYDRYFLLFQLAGLILLVAMIGAIVLTLRHRKDVKRQDVVAQMMRDP 185

Query: 185 DNSIVMVKVKSGKGI 199
             ++ +  VKSG+G+
Sbjct: 186 AKAMELRDVKSGQGL 200


>gi|154253656|ref|YP_001414480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Parvibaculum
           lavamentivorans DS-1]
 gi|154157606|gb|ABS64823.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Parvibaculum
           lavamentivorans DS-1]
          Length = 204

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 127/206 (61%), Gaps = 9/206 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++ FYLF+ + + + F+V++ RNP++SV  LI AF NAA LF+LLGAEF+A I ++
Sbjct: 1   MIGTAIAFYLFAGITVAAGFMVISARNPVHSVLFLILAFFNAAALFVLLGAEFIAFILVI 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAE------PRKKRGFLGSFFIGILAAELIVCASNFM 113
           VYVGAV V FLF++MMLD+D +E+ E      P      +      +L     V A    
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVELREGFLQYLPIGALIGIILLIELLLVLGGWVIAPG-- 118

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             S     + ++   +N   +G+V+YTQY Y  + +G ILL++M+GAIVL LRH+ ++KR
Sbjct: 119 AGSVAASPTPILTDVDNTRALGQVIYTQYVYLFQAAGLILLVAMVGAIVLTLRHKTNVKR 178

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q IS Q+    +  + + KV+ G+G+
Sbjct: 179 QVISDQVARTRETGVELKKVEPGQGL 204


>gi|254459906|ref|ZP_05073322.1| NADH-quinone oxidoreductase chain j [Rhodobacterales bacterium
           HTCC2083]
 gi|206676495|gb|EDZ40982.1| NADH-quinone oxidoreductase chain j [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 202

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 7/197 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+          V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV 
Sbjct: 8   FYLFAICTFTGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL--- 124
           V FLF++MMLDID   AE + +        + I    L+     F V+ A  + + L   
Sbjct: 68  VLFLFVVMMLDIDF--AELKAEMVKYMPLALLIGLVLLMQFTMAFGVWEASDQAAGLRGA 125

Query: 125 --VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                 +N E +G +LY +Y    ++SG ILL++MIGAIVL LRHR D+KRQD+  Q+  
Sbjct: 126 VTPTDAHNTEALGLLLYDKYFLIFQLSGMILLVAMIGAIVLTLRHRTDVKRQDVMAQMHR 185

Query: 183 NPDNSIVMVKVKSGKGI 199
           +P  ++ +  VK G+G+
Sbjct: 186 DPAKAMELKDVKPGQGL 202


>gi|83951756|ref|ZP_00960488.1| NADH dehydrogenase subunit J [Roseovarius nubinhibens ISM]
 gi|83836762|gb|EAP76059.1| NADH dehydrogenase subunit J [Roseovarius nubinhibens ISM]
          Length = 202

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 125/202 (61%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +L FYLF+   I+     V  RNP++SV  LI +F++AAGLF+LLGAEFVAM+ ++
Sbjct: 1   MTVFALAFYLFATCVIVGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLD+D    +    R    +  IG++       A     F+   E
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVLLMQFALAYGAWDFAEGAE 120

Query: 121 LSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            +R     + VEN   +G ++Y +Y    ++SG ILL++M+GAI L LRHR+D+KRQ++ 
Sbjct: 121 AARGAVTPDGVENTAALGLLIYDKYFLLFQLSGLILLVAMVGAIALTLRHRQDVKRQNVL 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ +  VK G+G+
Sbjct: 181 AQMYRDPAKAMELRDVKPGQGL 202


>gi|159043873|ref|YP_001532667.1| NADH dehydrogenase subunit J [Dinoroseobacter shibae DFL 12]
 gi|157911633|gb|ABV93066.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Dinoroseobacter shibae DFL 12]
          Length = 204

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 125/205 (60%), Gaps = 7/205 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  + FYLF+   + +   V   RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++
Sbjct: 1   MTVADITFYLFAITVVTAGLFVTLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D    +         +  IGI L  +L +   N+  FS E 
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMASYIPMAALIGIVLLMQLAMVFGNW-TFSEEA 119

Query: 120 ELSR--LVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
              R  +    N V+N   +G ++Y  Y    + SG ILL++MIGAIVL LRHR  IKRQ
Sbjct: 120 LAQRGAVTPDLNEVQNTAALGLLIYDDYILLFQASGLILLVAMIGAIVLTLRHRVGIKRQ 179

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           ++  Q++ +P  ++ +  VK G+G+
Sbjct: 180 NVVAQMQRDPAKAMELKDVKPGQGL 204


>gi|298291837|ref|YP_003693776.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Starkeya
           novella DSM 506]
 gi|296928348|gb|ADH89157.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Starkeya
           novella DSM 506]
          Length = 201

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 136/206 (66%), Gaps = 12/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +LFFYLF+ +A+ S+F+V+  RNP++SV  LI  FVNA+GLF+L+GAE++AM+ +V
Sbjct: 1   MSLAALFFYLFAGVAVASAFMVIASRNPVHSVLFLILTFVNASGLFILIGAEYLAMLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILA-----AELIVCASNFMV 114
           VYVGAV V FLF++MMLD+D +E+     ++GFL    +G+L      AEL++    +  
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVEL-----RQGFLQYLPVGVLVGLVFLAELVLVLGTWTF 115

Query: 115 FSA-EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                G ++      +N   IG+VLYT Y +  + +G ILL++MIGAIVL LRH+ ++KR
Sbjct: 116 GEGVTGAVASAAPGASNAVQIGRVLYTDYVFFFQAAGLILLVAMIGAIVLTLRHKENVKR 175

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q +  Q       +I +VKV SGKG+
Sbjct: 176 QSVPVQNARTKAMAIDVVKVPSGKGL 201


>gi|319761771|ref|YP_004125708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Alicycliphilus denitrificans BC]
 gi|330826551|ref|YP_004389854.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Alicycliphilus denitrificans K601]
 gi|317116332|gb|ADU98820.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Alicycliphilus denitrificans BC]
 gi|329311923|gb|AEB86338.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Alicycliphilus denitrificans K601]
          Length = 222

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/210 (39%), Positives = 131/210 (62%), Gaps = 16/210 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++ FFYLFS + + ++F V+T RNP+++V  LI AF  AAG++LLL AEF+A+  ++
Sbjct: 1   MDVKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAGVWLLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF----FIGILAA-EL-IVCASNFMV 114
           VY+GAV+V FLF++MMLDI  +      +RGF   F    FIG L A E+  V  + F  
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRFDTV----RRGFWKHFPLAAFIGALVAFEMAAVLMTGFRG 116

Query: 115 FSAEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                 +  LV         +N + +G+++YT+Y YP+EI+  ILL++MI AI L LR R
Sbjct: 117 VEEPKAVPALVNAAGQVLPYSNTQALGRLMYTEYLYPVEIAAVILLVAMISAIALTLRQR 176

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGKG 198
           +D+K  D + QL +   + +V++K+ + + 
Sbjct: 177 KDVKAGDATAQLRARASDRLVVLKMPTTQA 206


>gi|148285164|ref|YP_001249254.1| NADH dehydrogenase subunit J [Orientia tsutsugamushi str. Boryong]
 gi|146740603|emb|CAM81257.1| NADH dehydrogenase I chain J [Orientia tsutsugamushi str. Boryong]
          Length = 202

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 125/203 (61%), Gaps = 17/203 (8%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           LFFYLFS +A++ S  V+T +NP+Y+   LIF F N +GL +LLGAEF+A + ++VY GA
Sbjct: 2   LFFYLFSVLALLGSIGVITSKNPVYAALWLIFVFCNTSGLLILLGAEFLAFLLVIVYAGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--------AELIVCASNFM-VFS 116
           V + FLF++MML+I  +     K R  L      I+A          +++C SN+  +  
Sbjct: 62  VAILFLFVVMMLNIKSDNLVLVKTRTILNIPIYVIIAFIFIIDLSIIIVMCFSNYCPIHY 121

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            E  L        +++ IG+VLYT+YA   ++SG ILL++MIG +VL +R R  +KRQD 
Sbjct: 122 EENNL--------DIKAIGRVLYTEYALQFQLSGIILLIAMIGCVVLTVRKRSGVKRQDH 173

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
             Q+  N ++SI +VKV+  KGI
Sbjct: 174 YSQINRNRNSSIQVVKVEVNKGI 196


>gi|83311877|ref|YP_422141.1| NADH:ubiquinone oxidoreductase subunit 6 [Magnetospirillum
           magneticum AMB-1]
 gi|82946718|dbj|BAE51582.1| NADH:ubiquinone oxidoreductase subunit 6 [Magnetospirillum
           magneticum AMB-1]
          Length = 202

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 131/205 (63%), Gaps = 16/205 (7%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY+F+ +A+ S  +V++ RNP++SV  LI AF NAAGLFLLLGAEF+AM+ ++VYVG
Sbjct: 4   ALIFYMFAAIAVASGVMVISSRNPVHSVLWLILAFFNAAGLFLLLGAEFLAMVLVIVYVG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVFSAEG 119
           AV V FLF++MMLDI++       K GFL     G     +L  EL+     +  F+ + 
Sbjct: 64  AVAVLFLFVVMMLDINMV----EMKEGFLQYLPTGALIGLVLLVELLAMFGGW-AFAPDV 118

Query: 120 EL-----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           E      +  + + +N   +GK++YT Y Y  + SG +LL++MIG I+L  R R  +++Q
Sbjct: 119 EAMIKAPTPTLDQASNTVALGKLIYTNYVYLFQASGLVLLVAMIGTILLTHRKRTGVRKQ 178

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
            I++Q+  + D S+ + KV+SG+GI
Sbjct: 179 VIAEQVNRSRD-SVELKKVQSGRGI 202


>gi|91977346|ref|YP_570005.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisB5]
 gi|91683802|gb|ABE40104.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5]
          Length = 212

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 129/206 (62%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  LFFYL++  AI ++ +VV  RNP++S   LI  FVNAAG+F+L+GAEF+AMI +V
Sbjct: 1   MSMPVLFFYLYAGAAIAAAVMVVVARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-------FM 113
           VYVGAV V FLF+IMMLD+D      R + GFL     G+L   + +             
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFS----RLREGFLEYLPFGLLIGAIFLAELLLLAGGWVIT 116

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
               +   + +    +N E +G VLYT+Y +  +ISG ILL++MIGAIVL LRH++ +KR
Sbjct: 117 PTITKTITAPIPTNVSNTEALGLVLYTRYIHYFQISGVILLVAMIGAIVLTLRHKKSVKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q+I++Q     + ++ + +VK G+G+
Sbjct: 177 QNINEQNARTKEAAMAIRQVKPGQGL 202


>gi|146278032|ref|YP_001168191.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides ATCC 17025]
 gi|145556273|gb|ABP70886.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 204

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 126/204 (61%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  L FY F+  A+ ++ +VVT RN +++V  LI  F+++AG+F+LLGAEFVAM+ ++
Sbjct: 1   MSVADLAFYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AE 118
           VYVGAV V FLF++MMLD+D E  +    R    +  IGI+    +       V +  A 
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFEALKSEMARYMPVAALIGIVILLQLSMGIGAWVTAEGAP 120

Query: 119 GELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G         N +EN   +G ++Y +Y Y  + +G ILL++M+GAI+L LR RRD+KRQ+
Sbjct: 121 GLRQAPTPDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+  +P  ++ +  VK G+G+
Sbjct: 181 VLAQMWRDPAEAMELKDVKPGQGL 204


>gi|315499799|ref|YP_004088602.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Asticcacaulis
           excentricus CB 48]
 gi|315417811|gb|ADU14451.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Asticcacaulis
           excentricus CB 48]
          Length = 202

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 135/204 (66%), Gaps = 11/204 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++ FY+ + + ++S  LV+T RNP++SV  LI AF +AAGLF+L+GAEF+AM+ +VVY
Sbjct: 1   MLAIAFYILAAVTVVSGALVITARNPVHSVLFLILAFFSAAGLFVLMGAEFLAMLLVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFMVFSA 117
           VGAV V FLF++MMLD+D      + ++GF     IG++       ELI+ +S      A
Sbjct: 61  VGAVAVLFLFVVMMLDVDF----TKLRQGFANYLPIGMVVGILLLIELIMISSAVAQRGA 116

Query: 118 EGELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
               S  V+    +N+E IG+VLYT Y Y  + SG +LL++MIGAIVL L+HR  +KRQD
Sbjct: 117 AAGQSPQVYGAEMSNIEAIGRVLYTDYVYVFQASGLVLLVAMIGAIVLTLQHRTYVKRQD 176

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I  Q+     +++ +VKVK+G+GI
Sbjct: 177 IHTQVTRRRKDAVAIVKVKTGEGI 200


>gi|16126184|ref|NP_420748.1| NADH dehydrogenase subunit J [Caulobacter crescentus CB15]
 gi|13423398|gb|AAK23916.1| NADH dehydrogenase I, J subunit [Caulobacter crescentus CB15]
          Length = 205

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 137/207 (66%), Gaps = 12/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYL +F+ I +  LVV+ RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +V
Sbjct: 1   MPVQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL-----GSFFIGILAAELIV--CASNFM 113
           VYVGAV V FLF++MMLD+D   AE R+  GF+     G     ++A E+++   A    
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDF--AELRQ--GFVQYLPFGGLIALVIAIEMVMVVAAVATN 116

Query: 114 VFSAEGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
             +A+  L      G  N E IG+VLYT Y +  +++G +LL++MIGAIVL LRH+  +K
Sbjct: 117 GAAAKNPLPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKPGVK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQDI KQ+   P   + +V++K G+GI
Sbjct: 177 RQDIGKQVARTPKTGMELVQIKPGEGI 203


>gi|221234956|ref|YP_002517392.1| NADH dehydrogenase subunit J [Caulobacter crescentus NA1000]
 gi|220964128|gb|ACL95484.1| NADH-quinone oxidoreductase chain J [Caulobacter crescentus NA1000]
          Length = 217

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 137/207 (66%), Gaps = 12/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYL +F+ I +  LVV+ RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +V
Sbjct: 13  MPVQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLVV 72

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL-----GSFFIGILAAELIV--CASNFM 113
           VYVGAV V FLF++MMLD+D   AE R+  GF+     G     ++A E+++   A    
Sbjct: 73  VYVGAVAVLFLFVVMMLDVDF--AELRQ--GFVQYLPFGGLIALVIAIEMVMVVAAVATN 128

Query: 114 VFSAEGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
             +A+  L      G  N E IG+VLYT Y +  +++G +LL++MIGAIVL LRH+  +K
Sbjct: 129 GAAAKNPLPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKPGVK 188

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
           RQDI KQ+   P   + +V++K G+GI
Sbjct: 189 RQDIGKQVARTPKTGMELVQIKPGEGI 215


>gi|85708743|ref|ZP_01039809.1| NADH dehydrogenase subunit J [Erythrobacter sp. NAP1]
 gi|85690277|gb|EAQ30280.1| NADH dehydrogenase subunit J [Erythrobacter sp. NAP1]
          Length = 207

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 130/212 (61%), Gaps = 23/212 (10%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q L FYLF+ + I S+ +V+  RNP++SV  LI +F NAAGL +L+GAEF+AM+ ++VY
Sbjct: 2   IQVLAFYLFAGLVIASAVMVIMARNPVHSVLWLILSFFNAAGLMVLVGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF------- 115
           VGAV V FLF++MMLDID        + GF+ +F +GI A  LI+ A  F+         
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAA----MRAGFIKNFPLGI-AVALILLAELFLGLGAYGAGG 116

Query: 116 ----SAEGELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
               + +G  +    +G+  N++ IG +LY +Y    EI+G ILL++MIGAIVL  R  +
Sbjct: 117 IELGTPDGTAAE---RGDVSNIQAIGALLYGRYIVLFEIAGIILLVAMIGAIVLTHREAK 173

Query: 170 D--IKRQDISKQLESNPDNSIVMVKVKSGKGI 199
                RQDI KQ+   P+ + VM   + GKG+
Sbjct: 174 PGARGRQDIGKQIRRRPEEATVMKNPEYGKGV 205


>gi|326387452|ref|ZP_08209061.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208108|gb|EGD58916.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 205

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 130/206 (63%), Gaps = 13/206 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q+  FYLF+ + I+S  + +  RNP++SV  LI AF NAAGL +L GAEF+AM+ ++VY
Sbjct: 2   IQAFAFYLFATLMIVSGAVTILARNPVHSVLWLILAFFNAAGLMVLAGAEFIAMLLIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFM 113
           VGAV V FLF++MMLDID   AE R   GF+ +  +G++ A          ++V ++  M
Sbjct: 62  VGAVAVLFLFVVMMLDIDF--AELRA--GFIRNAPLGVILAVVLFVELFVGILVRSAGDM 117

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                G  + +    +N   IG +LYT+Y +  E +GFILL++MIGAIVL  R R  ++ 
Sbjct: 118 AIGTAGAATAVPAGLSNTAAIGALLYTRYLFVFEAAGFILLVAMIGAIVLTHRQRSGVRG 177

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q+I+KQ+   P+ + + ++ + GKG+
Sbjct: 178 QNIAKQIARRPEEATINLQPEVGKGV 203


>gi|120609959|ref|YP_969637.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Acidovorax
           citrulli AAC00-1]
 gi|120588423|gb|ABM31863.1| NADH dehydrogenase subunit J [Acidovorax citrulli AAC00-1]
          Length = 222

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 123/199 (61%), Gaps = 8/199 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFYLFS + + ++F V+T RNP+++V  LI AF  AA ++LLL AEF+A+  L+VY+GAV
Sbjct: 7   FFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALLLVYLGAV 66

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-AAEL-IVCASNFMVFSAEGELSRL 124
           +V FLF++MMLDI I+       R F  + FIG L A E+  V    F        ++ +
Sbjct: 67  MVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEPKAVAAM 126

Query: 125 VFKGNNV------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           V    NV      + +GK+LYT+Y YP+EI+  ILL++MI AI L LR R+D K   +S+
Sbjct: 127 VDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTKVTKVSE 186

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+     + + +VKV + +
Sbjct: 187 QVRVRAADRVELVKVAATQ 205


>gi|84502625|ref|ZP_01000744.1| NADH dehydrogenase subunit J [Oceanicola batsensis HTCC2597]
 gi|84389020|gb|EAQ01818.1| NADH dehydrogenase subunit J [Oceanicola batsensis HTCC2597]
          Length = 201

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/191 (41%), Positives = 116/191 (60%), Gaps = 24/191 (12%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
            V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV V FLF++MMLDID 
Sbjct: 22  TVIARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVAVLFLFVVMMLDIDF 81

Query: 82  EVAEPRKKRGFLGSFFIGIL-------------AAELIVCASNFMVFSAEGELSRLVFKG 128
              +    +    +  IG++             A+++   ASN +    EGE        
Sbjct: 82  AALKAEMAKYMPLALLIGVILLMQFGLAYGSWEASDM--AASNRLAAMPEGE-------- 131

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188
            N   +G ++Y QY    +++G ILL++MIGAIVL LRHR DIKRQ++  Q+  +P  S+
Sbjct: 132 -NTAGLGLLIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRTDIKRQNVLAQMWRDPAKSM 190

Query: 189 VMVKVKSGKGI 199
            +  VK G+G+
Sbjct: 191 ELKDVKPGQGL 201


>gi|319943357|ref|ZP_08017639.1| NADH-quinone oxidoreductase subunit J [Lautropia mirabilis ATCC
           51599]
 gi|319743172|gb|EFV95577.1| NADH-quinone oxidoreductase subunit J [Lautropia mirabilis ATCC
           51599]
          Length = 254

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 128/196 (65%), Gaps = 9/196 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S+ F+LF+ + + ++  V+T RNP++S   L+  FV++A ++LL+ AEF+A++ ++VYVG
Sbjct: 5   SVLFFLFALVTVFAATRVITARNPVHSALFLVLTFVSSAAIWLLMKAEFLAIVLVLVYVG 64

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-----AEG 119
           AV+V FLF++MMLDID++      + GF  S  +G+  A +IV   + ++++      E 
Sbjct: 65  AVMVLFLFVVMMLDIDLD----NLRVGFWRSLPVGLFVAAIIVVELSLVLWAHFGGVQEA 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           +L +     +N + +G++LYT Y YPLEI+G ILL++M+ AI L LR R+D K Q+ S+Q
Sbjct: 121 DLVQPAADYDNAKALGELLYTGYIYPLEIAGMILLVAMVAAIALTLRRRKDRKSQNPSQQ 180

Query: 180 LESNPDNSIVMVKVKS 195
           +     + + +V + +
Sbjct: 181 VRVRAADRVRLVSMSA 196


>gi|326316108|ref|YP_004233780.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372944|gb|ADX45213.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 222

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 123/199 (61%), Gaps = 8/199 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFYLFS + + ++F V+T RNP+++V  LI AF  AA ++LLL AEF+A+  ++VY+GAV
Sbjct: 7   FFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALVLVYLGAV 66

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-AAEL-IVCASNFMVFSAEGELSRL 124
           +V FLF++MMLDI I+       R F  + FIG L A E+  V    F        ++ +
Sbjct: 67  MVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEPKAVAAM 126

Query: 125 VFKGNNV------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           V    NV      + +GK+LYT+Y YP+EI+  ILL++MI AI L LR R+D K   +S+
Sbjct: 127 VDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTKVTKVSE 186

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+     + + +VKV + +
Sbjct: 187 QVRVRAADRVALVKVAATQ 205


>gi|148555901|ref|YP_001263483.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas
           wittichii RW1]
 gi|148501091|gb|ABQ69345.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas
           wittichii RW1]
          Length = 203

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 126/204 (61%), Gaps = 11/204 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++ FYLF+ + + S  L +  RNP++SV  LI AF NAAGL +L+GAEF+AM+ ++VY
Sbjct: 2   IQTIAFYLFAALVVASGTLTILARNPVHSVLWLILAFFNAAGLMILVGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA 117
           VGAV V FLF++MMLDID   AE R   GF      G   + +LAAE+I     +     
Sbjct: 62  VGAVAVLFLFVVMMLDIDF--AELRA--GFAQYLPFGILLVLVLAAEMIFAIGAWKAGGI 117

Query: 118 E--GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +    ++    +  N+E IG ++YT+Y Y  E +G ILL++++GAIVL  R R  +K Q+
Sbjct: 118 DMGARIAPTPSEVPNIEAIGTLIYTRYLYIFEGAGLILLVALVGAIVLTHRTRGGVKTQN 177

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           ++ Q    P+++   VK   G+G+
Sbjct: 178 VTAQNMRRPEDATRNVKPAVGQGV 201


>gi|197105258|ref|YP_002130635.1| NADH dehydrogenase I, J subunit [Phenylobacterium zucineum HLK1]
 gi|196478678|gb|ACG78206.1| NADH dehydrogenase I, J subunit [Phenylobacterium zucineum HLK1]
          Length = 207

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/209 (42%), Positives = 132/209 (63%), Gaps = 14/209 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYL + + + + F VV+ RNP++SV  LI AF +AAGLF+L+GAEF+AM+ +V
Sbjct: 1   MALQAIAFYLMAAVTVSAGFGVVSARNPVHSVLWLILAFFSAAGLFVLMGAEFLAMLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVF 115
           VYVGAV V FLF++MMLD+D        ++GF     +G     +LA E+IV ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFTA----LRQGFARYMPVGLLIAAVLAVEMIVVSTTVATR 116

Query: 116 SA--EGELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            A    E      +G    N E IG+VLYT Y Y  + +G +LL++MIGAIVL LRH+  
Sbjct: 117 GAARANETPMAAGQGADVTNAEAIGRVLYTDYVYFFQAAGLVLLVAMIGAIVLTLRHKPG 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           +KRQ ++ Q+  +P   + +V +K G+G+
Sbjct: 177 VKRQLVADQVLRSPKTGMRVVSLKPGEGV 205


>gi|222110095|ref|YP_002552359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           ebreus TPSY]
 gi|221729539|gb|ACM32359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           ebreus TPSY]
          Length = 221

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 130/208 (62%), Gaps = 24/208 (11%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F V+T RNP+++V  LI AF  AAG++ LL AEF+A+  ++
Sbjct: 1   MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAGVWFLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF----FIGILAA-EL-IVCASNF-- 112
           VY+GAV+V FLF++MMLDI I+      +RGF   F    FIG L A E+  V  + F  
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRIDTV----RRGFWKHFPLAAFIGALVAFEMAAVLMTGFRG 116

Query: 113 --------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                   ++ +A G+    V   +N + +GK+LYT+Y YP+E++  ILL++MI AI L 
Sbjct: 117 IEEPKAVEVLVNAAGQ----VVPYSNTKALGKLLYTEYLYPVEVAAVILLVAMIAAIALT 172

Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVK 192
           LR R+D K  D S+Q+     + +VMV+
Sbjct: 173 LRQRKDSKAIDPSEQVRVRARDRLVMVQ 200


>gi|84686446|ref|ZP_01014340.1| NADH dehydrogenase subunit J [Maritimibacter alkaliphilus HTCC2654]
 gi|84665629|gb|EAQ12105.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2654]
          Length = 204

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 122/205 (59%), Gaps = 7/205 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    FY F+   ++     V  RNP++SV  LI AF+ +AGLF++LGAEF+AM+ ++
Sbjct: 1   MTVADFAFYAFAVTTLVGGLFTVLARNPVHSVLWLIMAFIGSAGLFVVLGAEFLAMLLMI 60

Query: 61  VYVGAVIVFFLFIIMMLDID---IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVGAV V FLF++MMLD+D   ++    +     L    + ++   +I     F    A
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAGMAKYMPLALLIAVVLLMQMGMIYGTWQF-ADGA 119

Query: 118 EGELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           E     +      VEN   +G+++Y  Y    ++SG +LL++MIGAIVL LRHR+DIKRQ
Sbjct: 120 EAARRAVTPDMTEVENTAALGQLIYDDYFLLFQLSGLVLLVAMIGAIVLTLRHRKDIKRQ 179

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           D+  Q+  +P  ++ +V VK G+G+
Sbjct: 180 DVLAQMYRDPAKALELVDVKPGQGL 204


>gi|121998535|ref|YP_001003322.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Halorhodospira halophila SL1]
 gi|121589940|gb|ABM62520.1| NADH dehydrogenase subunit J [Halorhodospira halophila SL1]
          Length = 203

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 127/200 (63%), Gaps = 9/200 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+F+ + + ++ +V++VRNP+++   L+ AF NAA +++L GAEF+ +  ++VY
Sbjct: 1   MEQVIFYIFAGVLLFAATMVISVRNPVHAALFLVLAFFNAAVIWVLAGAEFLGIALVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA 117
           VGAV+V FLF++MMLDI+I    P ++ GF     +G+    ++AA+L+    +      
Sbjct: 61  VGAVMVLFLFVLMMLDINI---APMRE-GFTRYLPVGALVAVLMAAQLVAVIVSERADLI 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            G +       NN++ IG VLYT Y YP EI+  ILLL+++ AI L LR R    +QD+S
Sbjct: 117 SGTIPEPAADVNNIQAIGGVLYTVYVYPFEIAAVILLLAIVAAITLTLRRREGTHKQDVS 176

Query: 178 KQLESNPDNSIVMVKVKSGK 197
           +QL    D+ + +V++KS +
Sbjct: 177 RQLSVKKDDRLRLVRMKSSR 196


>gi|77463083|ref|YP_352587.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides 2.4.1]
 gi|126461955|ref|YP_001043069.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides ATCC 17029]
 gi|332557956|ref|ZP_08412278.1| NADH:ubiquinone oxidoreductase subunit J [Rhodobacter sphaeroides
           WS8N]
 gi|77387501|gb|ABA78686.1| NADH dehydrogenase I-ubiquinone oxidoreductase subunit 6 (chain J)
           [Rhodobacter sphaeroides 2.4.1]
 gi|126103619|gb|ABN76297.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029]
 gi|332275668|gb|EGJ20983.1| NADH:ubiquinone oxidoreductase subunit J [Rhodobacter sphaeroides
           WS8N]
          Length = 204

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 126/197 (63%), Gaps = 5/197 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F+  A+ ++ +VVT RN +++V  LI  F+++AG+F+LLGAEFVAM+ ++VYVGAV 
Sbjct: 8   FYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLVIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126
           V FLF++MMLD+D E  +    R    +  +GI +  +L +    ++       + + V 
Sbjct: 68  VLFLFVVMMLDVDFEALKSEVVRYMPVAALMGIVILLQLSMGIGAWVTADGAPAMRQAVT 127

Query: 127 KG-NNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              N +EN   +G ++Y +Y Y  + +G ILL++M+GAI+L LR RRD+KRQ++  Q+  
Sbjct: 128 PDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQNVLAQMWR 187

Query: 183 NPDNSIVMVKVKSGKGI 199
           +P  ++ +  VK G+G+
Sbjct: 188 DPAKAMELKDVKPGQGL 204


>gi|221638939|ref|YP_002525201.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides KD131]
 gi|221159720|gb|ACM00700.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131]
          Length = 199

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 126/197 (63%), Gaps = 5/197 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F+  A+ ++ +VVT RN +++V  LI  F+++AG+F+LLGAEFVAM+ ++VYVGAV 
Sbjct: 3   FYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLVIVYVGAVA 62

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126
           V FLF++MMLD+D E  +    R    +  +GI +  +L +    ++       + + V 
Sbjct: 63  VLFLFVVMMLDVDFEALKSEVVRYMPVAALMGIVILLQLSMGIGAWVTADGAPAMRQAVT 122

Query: 127 KG-NNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              N +EN   +G ++Y +Y Y  + +G ILL++M+GAI+L LR RRD+KRQ++  Q+  
Sbjct: 123 PDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQNVLAQMWR 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           +P  ++ +  VK G+G+
Sbjct: 183 DPAKAMELKDVKPGQGL 199


>gi|262277292|ref|ZP_06055085.1| NADH-quinone oxidoreductase, j subunit [alpha proteobacterium
           HIMB114]
 gi|262224395|gb|EEY74854.1| NADH-quinone oxidoreductase, j subunit [alpha proteobacterium
           HIMB114]
          Length = 206

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 136/206 (66%), Gaps = 11/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  +L FYLFSF+AI SS  V++ +N +++VF LI  FV+ + LF+++GAE++ M+TL+
Sbjct: 1   MLAHALVFYLFSFIAISSSLAVISSKNTVHAVFFLILDFVSISCLFIMMGAEYLGMLTLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MML+++ +      + GFL     G+L   +I+     M+ + + +
Sbjct: 61  VYVGAVAVLFLFVVMMLNVNFK----DLRTGFLSYLPFGLLIGIVIIIELGMMIGTWKYK 116

Query: 121 LS-------RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
            S       ++  K +N E +G VLYT + +  +ISG ILL++MIGAI+L  R + ++KR
Sbjct: 117 DSFIKTSEIQISSKVSNTEALGNVLYTDFIHYFQISGIILLVAMIGAILLTFRQKENLKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           QDI+KQ+    D+ +++ +V+S KG+
Sbjct: 177 QDITKQVSRERDDGVLLEEVESFKGV 202


>gi|121593386|ref|YP_985282.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Acidovorax
           sp. JS42]
 gi|120605466|gb|ABM41206.1| NADH dehydrogenase subunit J [Acidovorax sp. JS42]
          Length = 222

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 122/199 (61%), Gaps = 17/199 (8%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFYLF+ + + ++F V+T RNP+++V  LI AF  AAG++LLL AEF+A+  ++VY+GAV
Sbjct: 7   FFYLFAVVLLYAAFRVITARNPVHAVLHLILAFSQAAGIWLLLKAEFLAITLVLVYLGAV 66

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI------VCASNFMVFSAEGE 120
           +V FLF++MMLDI I+      ++GF   F +  L   ++      V  + F        
Sbjct: 67  MVLFLFVVMMLDIRIDAV----RKGFWKHFPVAALIGAIVTFEMAAVLMTGFRGMEEPKA 122

Query: 121 LSRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           ++ +V          +N + +GK+LYT+Y YP+E++  ILL++MI AI L LR R+D K 
Sbjct: 123 IADVVVNAAGQAVPYSNTKALGKLLYTEYLYPVEVAAVILLVAMIAAIALTLRQRKDSKA 182

Query: 174 QDISKQLESNPDNSIVMVK 192
            D S+Q+     + +VMV+
Sbjct: 183 IDPSEQVRVRARDRLVMVQ 201


>gi|218200865|gb|EEC83292.1| hypothetical protein OsI_28652 [Oryza sativa Indica Group]
          Length = 673

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 126/205 (61%), Gaps = 8/205 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F V+T RNP+++V  LI AF  AA ++LLL AEF+A+  ++
Sbjct: 452 MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALVL 511

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-AAEL-IVCASNFMVFSAE 118
           VY+GAV+V FLF++MMLDI I+       R F  + FIG L A E+  V    F      
Sbjct: 512 VYLGAVMVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEP 571

Query: 119 GELSRLVFKGNNV------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
             ++ +V    NV      + +GK+LYT+Y YP+EI+  ILL++MI AI L LR R+D K
Sbjct: 572 KAVAAMVDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTK 631

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
              +S+Q+     + + +VKV + +
Sbjct: 632 VTKVSEQVRVRAADRVALVKVAATQ 656


>gi|149184626|ref|ZP_01862944.1| NADH dehydrogenase I, J subunit [Erythrobacter sp. SD-21]
 gi|148831946|gb|EDL50379.1| NADH dehydrogenase I, J subunit [Erythrobacter sp. SD-21]
          Length = 206

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 14/207 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++ FY+F+ + I S+ +V+T RNP++SV  LI AF NAAGL +L+GAEF+AM+ ++VY
Sbjct: 2   IQTIAFYMFAVLVIASAVMVITARNPVHSVLWLILAFFNAAGLMVLVGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS---------NFM 113
           VGAV V FLF++MMLDIDI       + GF+ +  +G++ A +++              M
Sbjct: 62  VGAVAVLFLFVVMMLDIDIAA----MRAGFVKNAPLGLVIALVLLAELVLGVGAYRVGVM 117

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK- 172
                          +N   IG +LYT+Y +  E +G ILL++MIGAIVL  R  +  + 
Sbjct: 118 ELGTPMASEAPAMMESNTGAIGALLYTKYLFLFEAAGIILLVAMIGAIVLTHRPPKTTRG 177

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
            QDI KQ   NPD + VM +   G+G+
Sbjct: 178 HQDIGKQNRRNPDEATVMKQPIVGEGV 204


>gi|241763297|ref|ZP_04761354.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           delafieldii 2AN]
 gi|241367572|gb|EER61859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           delafieldii 2AN]
          Length = 222

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 128/209 (61%), Gaps = 24/209 (11%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F V+T RNP+++V  LI AF  AA ++LLL AEF+A++ ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF----FIG-ILAAELIVC------- 108
           VY+GAV+V FLF++MMLDI I+      ++GF   F    FIG ++A E+          
Sbjct: 61  VYLGAVMVLFLFVVMMLDIHIDTI----RKGFWKHFPLAAFIGAMIALEMAAVLMGGFRG 116

Query: 109 ----ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                +  +V  A G+    V   +N + +GK+LYT+Y YP+EI+  ILL++MI AI L 
Sbjct: 117 LDEPKAAAVVLDAAGQ----VVPYSNAKALGKLLYTEYLYPVEIAAVILLVAMIAAIALT 172

Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKV 193
           LR R+D K  D S Q+     + + +VK+
Sbjct: 173 LRQRKDTKAIDPSSQIRVRAKDRLQVVKL 201


>gi|319898891|ref|YP_004158984.1| NADH dehydrogenase I chain J [Bartonella clarridgeiae 73]
 gi|319402855|emb|CBI76406.1| NADH dehydrogenase I chain J [Bartonella clarridgeiae 73]
          Length = 206

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 132/199 (66%), Gaps = 7/199 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFY+F+F+ +IS+ +VV+ RNP++SV  LI AF NAA LFLL GAEF+ +I LVVYVGAV
Sbjct: 9   FFYIFAFIMLISAVIVVSARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAV 68

Query: 67  IVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL---- 121
            V FLF++MMLD+D  E+     K   +G+F   I+A ELI    N   FS   E+    
Sbjct: 69  AVLFLFVVMMLDVDFAELKSGALKYAPIGAFIGVIIAIELIFVFINNR-FSPISEIHVTQ 127

Query: 122 -SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            +    +  N + +G +LYT Y +  EISG ILL++MIGAI+L LRHR  +KRQ ++ Q+
Sbjct: 128 PTSDSTQRTNTQALGDILYTDYVFYFEISGLILLVAMIGAIILTLRHRSGVKRQSVAVQV 187

Query: 181 ESNPDNSIVMVKVKSGKGI 199
               +N+I + KV+SGKGI
Sbjct: 188 ARTAENAIEIKKVESGKGI 206


>gi|85374151|ref|YP_458213.1| NADH dehydrogenase I, J subunit [Erythrobacter litoralis HTCC2594]
 gi|84787234|gb|ABC63416.1| NADH dehydrogenase I, J subunit [Erythrobacter litoralis HTCC2594]
          Length = 206

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 133/209 (63%), Gaps = 16/209 (7%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           ++Q+  FYLF+ + I S  L +  RNP++SV  LI AF NAAGL +LLGAEF+AM+ ++V
Sbjct: 1   MIQAFAFYLFAALMIASGVLTIMSRNPVHSVLWLILAFFNAAGLMVLLGAEFIAMLLVIV 60

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC----------ASN 111
           YVGAV V FLF++MMLDID   AE R   GF+ +F +GI  A +++           A  
Sbjct: 61  YVGAVAVLFLFVVMMLDIDF--AELRA--GFIKNFPLGIAIALVLLAELVLGIGAYRAGI 116

Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
             + + +G  + LV +  N+E++G ++Y +Y +  E +G ILL++MIGAIVL  R  ++ 
Sbjct: 117 VELGTPDGSAAPLVGE-TNIESLGALMYGKYLFLFEGAGLILLVAMIGAIVLTHRDLKNT 175

Query: 172 K-RQDISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+I KQ+   P+ + VM + + GKG+
Sbjct: 176 RGHQNIGKQVSRRPEEATVMKQPEIGKGV 204


>gi|154248543|ref|YP_001419501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xanthobacter
           autotrophicus Py2]
 gi|154162628|gb|ABS69844.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xanthobacter
           autotrophicus Py2]
          Length = 204

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 131/194 (67%), Gaps = 15/194 (7%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           + S+F+V++ RNP+ SV  LI AFVNAAGLF+L+GAEF+A+I +VVYVGAV V FLF++M
Sbjct: 16  VASAFMVISSRNPVQSVLFLILAFVNAAGLFILIGAEFLALILVVVYVGAVAVLFLFVVM 75

Query: 76  MLDID-IEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFM----VFSAEGELSRLV 125
           MLD+D +E+     ++GFL    +G     I  AEL++ A  ++    V SA        
Sbjct: 76  MLDVDFVEL-----RQGFLQYLPVGLVIGLIFLAELVLVAGAWVMGPGVASAVKSAPPSA 130

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
               NV+ IG+VLYT Y Y  + +GF+LL++MIGAIVL LRH+ ++KRQ+IS Q+     
Sbjct: 131 GDVGNVQAIGQVLYTDYIYFFQAAGFVLLVAMIGAIVLTLRHKVNVKRQNISAQVARTAK 190

Query: 186 NSIVMVKVKSGKGI 199
            ++ +VKV+ G+G+
Sbjct: 191 TAMDVVKVRPGQGL 204


>gi|221068603|ref|ZP_03544708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Comamonas
           testosteroni KF-1]
 gi|220713626|gb|EED68994.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Comamonas
           testosteroni KF-1]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/210 (39%), Positives = 123/210 (58%), Gaps = 17/210 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F VVT RNP+++V +LI AF  AA ++LLL AEF+ +  ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY+GAV+V FLF++MMLDI I+      +RGF   F    L   LI      ++    G+
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRIDA----MRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGD 116

Query: 121 LSRLVFKG-------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +      G             +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR 
Sbjct: 117 VEDAKAVGTTMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRK 176

Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           R+D K  + + Q+     + I +VKV S K
Sbjct: 177 RKDSKAMNPADQIRVRASDRIKLVKVDSTK 206


>gi|323138154|ref|ZP_08073227.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocystis
           sp. ATCC 49242]
 gi|322396616|gb|EFX99144.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocystis
           sp. ATCC 49242]
          Length = 200

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 127/200 (63%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++FFY+F+ + I S+ +V+  RNP++SV  LI AF N AGLFLL GAEF+AMI +VVY
Sbjct: 1   MAAVFFYIFATIMIASACVVIFARNPVHSVLFLILAFCNGAGLFLLAGAEFLAMILIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFM--VFSAEG 119
           VGAV V FLF++MMLD+D  E+ +   K   +G+    ++ AEL + A  +     ++  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKQGFNKYLPVGAAVGVVVLAELGMVAIGWQSAPSASSA 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             + +V   +N   +G+VLYT+Y    + S  +LL +MIGAIVL L H+ ++KRQ I++Q
Sbjct: 121 AATPIVANVSNTAALGQVLYTKYVIFFQASALVLLTAMIGAIVLTLHHKPNVKRQKIAEQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
              N DN I + KV    G+
Sbjct: 181 NARNRDNVIEIKKVPFRTGV 200


>gi|319408588|emb|CBI82243.1| NADH dehydrogenase I chain J [Bartonella schoenbuchensis R1]
          Length = 190

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 123/193 (63%), Gaps = 13/193 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++S+  VV  RNP++SV  LI AF NAA LF+LLGAEF+ +I LVVYVGAV V FLF++M
Sbjct: 2   LVSAVTVVAARNPVHSVLFLILAFFNAAALFVLLGAEFLGLILLVVYVGAVAVLFLFVVM 61

Query: 76  MLDIDIEVAEPRKKRGFL-----GSFFIGILAAELIVC--ASNF--MVFSAEGELSRLVF 126
           MLD+D        K G L     G+F   ++  ELI    +S+F  ++ S   +    + 
Sbjct: 62  MLDVDFA----ELKSGVLRYIPVGAFIGVVIVVELISVFISSHFSPVLRSYVTQPMPDLA 117

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186
           +  N + +G +LYT Y +  +I+G ILL++MIGAIVL LRH+  +KRQ I+ Q+     +
Sbjct: 118 QRTNTQALGDILYTDYIFYFQIAGMILLVAMIGAIVLTLRHKSGVKRQSIAVQVARTAKS 177

Query: 187 SIVMVKVKSGKGI 199
           +I + +V+SGKGI
Sbjct: 178 AIEIKQVESGKGI 190


>gi|299530751|ref|ZP_07044166.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas
           testosteroni S44]
 gi|298721267|gb|EFI62209.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas
           testosteroni S44]
          Length = 226

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/210 (39%), Positives = 123/210 (58%), Gaps = 17/210 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F VVT RNP+++V +LI AF  AA ++LLL AEF+ +  ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY+GAV+V FLF++MMLDI I+      +RGF   F    L   LI      ++    G+
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRID----SMRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGD 116

Query: 121 LSRLVFKG-------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +      G             +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR 
Sbjct: 117 VEDAKAVGATMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRK 176

Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           R+D K  + + Q+     + I +VKV S K
Sbjct: 177 RKDSKAMNPADQIRVRASDRIKLVKVDSTK 206


>gi|264677207|ref|YP_003277113.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas
           testosteroni CNB-2]
 gi|262207719|gb|ACY31817.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas
           testosteroni CNB-2]
          Length = 226

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/210 (39%), Positives = 123/210 (58%), Gaps = 17/210 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F VVT RNP+++V +LI AF  AA ++LLL AEF+ +  ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY+GAV+V FLF++MMLDI I+      +RGF   F    L   LI      ++    G+
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRID----SMRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGD 116

Query: 121 LSRLVFKG-------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +      G             +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR 
Sbjct: 117 VEDAKAVGATMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRK 176

Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           R+D K  + + Q+     + I +VKV S K
Sbjct: 177 RKDSKAMNPADQIRVRASDRIKLVKVDSTK 206


>gi|113867079|ref|YP_725568.1| NADH dehydrogenase subunit J [Ralstonia eutropha H16]
 gi|113525855|emb|CAJ92200.1| NADH dehydrogenase chain J [Ralstonia eutropha H16]
          Length = 214

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 128/207 (61%), Gaps = 21/207 (10%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FY+F+ + ++S+  V+T +NP++S   L+ +F  AA +++LL AEF+A++ ++
Sbjct: 1   MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLSFFTAAAIWMLLKAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114
           VYVGAV+V FLF++MM+DIDIE      +R F     + S    ++ AE+ IV   NF+ 
Sbjct: 61  VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMASVVGALIIAEMAIVLVRNFI- 115

Query: 115 FSAEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               G  + +   G      +N   +GK++YT Y Y  E++G ILL+++I A+ L LR R
Sbjct: 116 ----GTTTPVATNGSQDPGYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRR 171

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKS 195
           +D+K QD+S QL +  D  + +V ++S
Sbjct: 172 KDVKAQDVSAQLRTRRDERVRLVPMQS 198


>gi|254486921|ref|ZP_05100126.1| NADH-quinone oxidoreductase chain j [Roseobacter sp. GAI101]
 gi|214043790|gb|EEB84428.1| NADH-quinone oxidoreductase chain j [Roseobacter sp. GAI101]
          Length = 200

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 120/201 (59%), Gaps = 15/201 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   I      V  RNP++SV  LI AF++AAGLF++L AEFVAM+ ++VYVGAV 
Sbjct: 6   FYLFATCLIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVMLNAEFVAMLLIIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-MVF-------SAEG 119
           V FLF++MMLD+D    +    R      ++ +     ++    F M F       +AEG
Sbjct: 66  VLFLFVVMMLDVDFAELKAEMAR------YMPLALLIGLIILMQFVMAFGAWDANVAAEG 119

Query: 120 ELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             + +V     N   +G +LY +Y    ++SG ILL++MIGAIVL LRHR D+KRQD+  
Sbjct: 120 LRAHVVTDDVQNTAALGLILYDEYFLLFQLSGLILLVAMIGAIVLTLRHRPDVKRQDVVA 179

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+  +P  ++ +  VK G+G+
Sbjct: 180 QMMRDPKLAMKLNDVKPGQGL 200


>gi|266660|sp|P29922|NQO10_PARDE RecName: Full=NADH-quinone oxidoreductase chain 10; AltName:
           Full=NADH dehydrogenase I, chain 10; AltName:
           Full=NDH-1, chain 10
 gi|150612|gb|AAA25596.1| NADH dehydrogenase [Paracoccus denitrificans]
          Length = 200

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 131/201 (65%), Gaps = 5/201 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FYLF+  A ++ F+VV  RNP++SV  LI AF++AAGLF+L GAEFVAM+ +VVY
Sbjct: 1   MMTFAFYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD+D    +    R    +  IG +L A+L +  S +   S + E 
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTP-SDQAES 119

Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            R       VEN   +G VLY +Y    +++G +LL++MIGAIVL +RHR+D+KRQ++ +
Sbjct: 120 LRAAPVDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVAMIGAIVLTMRHRKDVKRQNVLE 179

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+  +P  ++ +  VK G+G+
Sbjct: 180 QMWRDPAKTMELKDVKPGQGL 200


>gi|58584882|ref|YP_198455.1| NADH:ubiquinone oxidoreductase chain J [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419198|gb|AAW71213.1| NADH:ubiquinone oxidoreductase chain J [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 177

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 120/179 (67%), Gaps = 8/179 (4%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82
           ++VRNP+++V  LIF FV++  LF+LLGAEF+AM+ L+VY+GAV V FLF++MMLDID  
Sbjct: 2   ISVRNPVHAVLFLIFTFVSSTVLFILLGAEFIAMMVLIVYIGAVAVLFLFVVMMLDID-- 59

Query: 83  VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-FKGNNVENIGKVLYTQ 141
               R  +GF   F   I+   +     +F++ S+   +S ++ +  NNV+ IG +LYT 
Sbjct: 60  --YIRIHQGFAKHFTFSIILCVVFFLVISFVICSSVLNISSVIDYNANNVKAIGDLLYTD 117

Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           Y Y   +SG +LL++++GAI L L+ ++  IKRQ++ KQL  +  +S+ +VK K GKG+
Sbjct: 118 YMYAFHLSGILLLVAIVGAIALTLQDKKKGIKRQNVLKQLTQS--SSVKLVKAKFGKGV 174


>gi|302383059|ref|YP_003818882.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193687|gb|ADL01259.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 208

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 130/208 (62%), Gaps = 18/208 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + FYL S +A++S  LVVT RNP++SV  LI AF ++AGLF+LLGAEF+AM+ +VVY
Sbjct: 2   LQGIAFYLLSAVAVVSGLLVVTARNPVHSVLWLILAFFSSAGLFVLLGAEFLAMLLVVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA 117
           VGAV V FLF++MMLD+D      R + G+     L +   G+L AE+++ +   +V   
Sbjct: 62  VGAVAVLFLFVVMMLDVDFV----RLREGYATYLPLAAIVAGVLLAEMVMIS---IVVVQ 114

Query: 118 EGELSRLV------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
            G  S  V         +NVE IG+VLYT Y Y  + +G +LL++MIGAIVL LR +  +
Sbjct: 115 GGAASDAVAPAVATADASNVETIGRVLYTDYIYFFQAAGIVLLIAMIGAIVLTLRKKPSV 174

Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199
           +RQD   Q   +   S+ +  V +G G+
Sbjct: 175 RRQDPGAQTNRDRKTSVEIKGVVTGAGV 202


>gi|198284337|ref|YP_002220658.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666659|ref|YP_002426999.1| NADH-quinone oxidoreductase, J subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248858|gb|ACH84451.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518872|gb|ACK79458.1| NADH-quinone oxidoreductase, J subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 198

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 120/202 (59%), Gaps = 14/202 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + ++ FY+FS + + S+ LV+T RNP+Y+   L+ AF NAA LF+LLGAEF+ +I ++VY
Sbjct: 4   VTTILFYIFSAILLGSATLVITARNPVYATLYLVLAFFNAAALFILLGAEFLGLILILVY 63

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF-------FIGILAAELIVCASNFMVF 115
           VGAV+V FLF++MMLDI++     R K GFL           +G+L   ++   S+    
Sbjct: 64  VGAVMVLFLFVVMMLDINLA----RIKEGFLSYLPLGLAIAILGVLELAVVFWTSSLGHI 119

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            A   L       +N   +G +LYT+Y YP EI+  ILL+++I AI L LR R   K Q+
Sbjct: 120 PAPAALPA---DTDNTRALGILLYTKYLYPFEIAAVILLVAIIAAIALTLRRRTGTKTQN 176

Query: 176 ISKQLESNPDNSIVMVKVKSGK 197
           I+ Q+     + + +V ++  +
Sbjct: 177 IAAQMAVRAKDRVQLVDLREPE 198


>gi|294011318|ref|YP_003544778.1| NADH dehydrogenase I chain J [Sphingobium japonicum UT26S]
 gi|292674648|dbj|BAI96166.1| NADH dehydrogenase I chain J [Sphingobium japonicum UT26S]
          Length = 203

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 127/200 (63%), Gaps = 13/200 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+ + + S  L +  RNP++SV  LI AF NAAGL +LLGAEF+AM+ ++VYVGAV 
Sbjct: 7   FYLFAILVVSSGALTILSRNPVHSVLWLIMAFFNAAGLMVLLGAEFIAMLLVIVYVGAVA 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS---NFMVFSAEG-ELSR 123
           V FLF++MMLDID   AE R   GF+     G+L A L++ A       ++SA   EL++
Sbjct: 67  VLFLFVVMMLDIDF--AELRA--GFVDYLPFGLLIA-LVLLAEIVLGIGLWSAGPIELAQ 121

Query: 124 LVFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N    N++ IG +LYT+Y +  E +G +LL++MIGAIVL  R R  ++ Q+++KQ
Sbjct: 122 RAAPVNPELSNIQAIGALLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRGQNVAKQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
               P++++  V    G+G+
Sbjct: 182 NRRRPEDAVRNVNQPVGQGV 201


>gi|119384967|ref|YP_916023.1| NADH dehydrogenase subunit J [Paracoccus denitrificans PD1222]
 gi|119374734|gb|ABL70327.1| NADH dehydrogenase subunit J [Paracoccus denitrificans PD1222]
          Length = 199

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/196 (44%), Positives = 129/196 (65%), Gaps = 5/196 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  A ++ F+VV  RNP++SV  LI AF++AAGLF+L GAEFVAM+ +VVYVGAV 
Sbjct: 5   FYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVYVGAVA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRLVF 126
           V FLF++MMLD+D    +    R    +  IG +L A+L +  S +   S + E  R   
Sbjct: 65  VLFLFVVMMLDVDFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTP-SDQAESLRAAP 123

Query: 127 KGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
               VEN   +G VLY +Y    +++G +LL++MIGAIVL +RHR+D+KRQ++ +Q+  +
Sbjct: 124 VDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVAMIGAIVLTMRHRKDVKRQNVLEQMWRD 183

Query: 184 PDNSIVMVKVKSGKGI 199
           P  ++ +  VK G+G+
Sbjct: 184 PAKTMELKDVKPGQGL 199


>gi|307730331|ref|YP_003907555.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1003]
 gi|307584866|gb|ADN58264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1003]
          Length = 229

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 125/207 (60%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDVLRKDFKRFVPMATLVG----AIIVLETALILWHGYGA 116

Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            S +V             +N   IGKV+YT Y +  EI+G +LL+++I AI L   H++D
Sbjct: 117 TSTVVRDTTAAASGMGDWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIALTTSHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ IS+Q++    + + +VK+ S K
Sbjct: 177 SKRQKISQQVKVRAQDRVRVVKMPSEK 203


>gi|117926900|ref|YP_867517.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Magnetococcus sp. MC-1]
 gi|117610656|gb|ABK46111.1| NADH dehydrogenase subunit J [Magnetococcus sp. MC-1]
          Length = 196

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 121/194 (62%), Gaps = 8/194 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + + ++++  V+T +NP+ SV  L+ AF  AAGLFLL+ AEF+A+I ++VY+GAV 
Sbjct: 7   FYLLAAIMLVAALRVITAKNPVSSVMFLVLAFFTAAGLFLLIEAEFLAVILVMVYMGAVA 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           + FLF++MMLD+D  +     ++G      +GI    +++     +  S   E    V  
Sbjct: 67  ILFLFVVMMLDVDFALL----RQGARDHLPLGIAVGAVVLFEFAAVASSIHPEQHGAVV- 121

Query: 128 GNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
           G NV N   IGK+LYT+Y +P E++  ILL+++IGA+ L  R R +++ Q+I  Q+    
Sbjct: 122 GENVNNTLEIGKILYTKYLFPFEVASLILLVALIGAVALAHRKRNNVRTQNIPDQIARTR 181

Query: 185 DNSIVMVKVKSGKG 198
           D S+ + KVKSG+G
Sbjct: 182 DESVALKKVKSGEG 195


>gi|323525445|ref|YP_004227598.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1001]
 gi|323382447|gb|ADX54538.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1001]
          Length = 227

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 125/207 (60%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDVLRKDFKRFVPMATVVG----AIIVLETALILWHGYGA 116

Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            S +V             +N   IGKV+YT Y +  EI+G +LL+++I AI L   H++D
Sbjct: 117 TSTVVRDTTAAASGMGDWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIALTTSHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ IS+Q++    + + +VK+ S K
Sbjct: 177 SKRQTISQQVKVRAQDRVRVVKMPSEK 203


>gi|307293261|ref|ZP_07573107.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobium
           chlorophenolicum L-1]
 gi|306881327|gb|EFN12543.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobium
           chlorophenolicum L-1]
          Length = 203

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 127/204 (62%), Gaps = 11/204 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  L FYLF+ + + S  L +  RNP++SV  LI AF NAAGL +LLGAEF+AM+ ++VY
Sbjct: 2   IHVLAFYLFAILVVSSGALTILSRNPVHSVLWLIMAFFNAAGLMVLLGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFSAEG- 119
           VGAV V FLF++MMLDID   AE R   GF+     G+L A +++        ++SA   
Sbjct: 62  VGAVAVLFLFVVMMLDIDF--AELRA--GFVNYLPFGLLIAFVLLAEIVLGIGLWSAGPI 117

Query: 120 ELSRLVFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           EL++     N    N++ IG +LYT+Y +  E +G +LL++MIGAIVL  R R  ++ Q+
Sbjct: 118 ELAQRAAPVNPELSNIQAIGGLLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRGQN 177

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           ++KQ    P +++  V    G+G+
Sbjct: 178 VAKQNRRRPQDAVRNVNQPVGQGV 201


>gi|91782621|ref|YP_557827.1| NADH dehydrogenase subunit J [Burkholderia xenovorans LB400]
 gi|296160638|ref|ZP_06843453.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. Ch1-1]
 gi|91686575|gb|ABE29775.1| NADH dehydrogenase subunit J [Burkholderia xenovorans LB400]
 gi|295889164|gb|EFG68967.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. Ch1-1]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 125/207 (60%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDVLRKDFKRFVPMATLVG----AIIVIETALILWHGYGA 116

Query: 121 LSRLVFKGNNVEN----------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +  +       N          IGK++YT Y +  E++G +LL+++I AI L   H++D
Sbjct: 117 TATALRDTTAAANGMGDWSNTRLIGKIIYTDYIFAFEVAGLVLLVAIIAAIALTTSHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ++S+Q++    + + +VK+KS K
Sbjct: 177 SKRQNVSEQVKVRAQDRVRVVKMKSEK 203


>gi|121604339|ref|YP_981668.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Polaromonas
           naphthalenivorans CJ2]
 gi|120593308|gb|ABM36747.1| NADH dehydrogenase subunit J [Polaromonas naphthalenivorans CJ2]
          Length = 215

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 126/207 (60%), Gaps = 19/207 (9%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY+F+ + + ++F V+T RNP+++   L+ AF  AA +++LL AEF+A+  ++
Sbjct: 1   MDAKTGLFYVFAAVLLFAAFRVITARNPVHAALFLVLAFFQAAAVWILLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VYVGAV+V FLF++MMLDI+++      ++GF   F +      +I    ++++      
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDSV----RKGFWKHFPLAGTVGAIIALEMSYVLMGGFRE 116

Query: 118 ---------EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                     GEL+  V   +N + +GKVLY+QY YPLEI+  ILL+++I AI L LR R
Sbjct: 117 PPQGASMPVSGELAAQV---SNTKELGKVLYSQYIYPLEIAAVILLVAIIAAIALTLRER 173

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKS 195
           +D KR + + Q+     + + +VK+KS
Sbjct: 174 KDSKRTNPADQVRVKSQDRVRLVKMKS 200


>gi|160900603|ref|YP_001566185.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Delftia
           acidovorans SPH-1]
 gi|160366187|gb|ABX37800.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Delftia
           acidovorans SPH-1]
          Length = 222

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 123/205 (60%), Gaps = 16/205 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F VVT RNP+++V +LI AF  AAG++LLL AEF+ +  ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAGIWLLLKAEFLGVTLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSA 117
           VY+GAV+V FLF++MMLDI I+      ++GF   F    L   LI      ++   FS 
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRIDAV----RQGFWKHFPFAALIGALIAFEMGMVLMGGFSG 116

Query: 118 EGELSRLVFKGN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             E   +    N         N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR R
Sbjct: 117 VEEPKAIAATVNAAGQTVQYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRKR 176

Query: 169 RDIKRQDISKQLESNPDNSIVMVKV 193
           +D K  + ++Q+     + + +VKV
Sbjct: 177 KDSKAVNPAQQIRVRAKDRLELVKV 201


>gi|94309881|ref|YP_583091.1| NADH dehydrogenase subunit J [Cupriavidus metallidurans CH34]
 gi|93353733|gb|ABF07822.1| NADH dehydrogenase chain J [Cupriavidus metallidurans CH34]
          Length = 225

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 125/204 (61%), Gaps = 21/204 (10%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FY+F+ + ++S+  V+T +NP++S   L+ AF  AA ++++L AEF+A++ L+
Sbjct: 13  MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLAFFTAAAIWMILKAEFLAILLLL 72

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114
           VYVGAV+V FLF++MM+DIDIE      +R F     + S    ++ AE+ IV   NF+ 
Sbjct: 73  VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMASIIGALIIAEMAIVLVRNFI- 127

Query: 115 FSAEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               G  + ++  G      +N   +GK++YT Y Y  E++G ILL+++I A+ L LR R
Sbjct: 128 ----GTTNAVLPPGAQDPNYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRR 183

Query: 169 RDIKRQDISKQLESNPDNSIVMVK 192
           +D+K QD+  QL    D  + +VK
Sbjct: 184 KDVKAQDVGAQLRVRRDERVRLVK 207


>gi|254455980|ref|ZP_05069409.1| NADH dehydrogenase i chain j [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082982|gb|EDZ60408.1| NADH dehydrogenase i chain j [Candidatus Pelagibacter sp. HTCC7211]
          Length = 210

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 126/208 (60%), Gaps = 11/208 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++FFYLFS +AI+S+ +V   +N ++SVF LI  F++ + LF+++GAEF+ MI L+
Sbjct: 1   MIAHAIFFYLFSLIAIVSAIMVTASKNTVHSVFFLILDFISISCLFIMIGAEFLGMIMLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFM-- 113
           VYVGAV V FLF++MML++  +  +        G   +G++ +     ELI+    +   
Sbjct: 61  VYVGAVAVLFLFVVMMLNVAQQKNQWFASEESSGHIPVGLIISTLIFFELIIVIGGWKYK 120

Query: 114 --VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
             +F     ++   +  +N  +IG++LYT Y +  +ISG ILL++M+GAIVL  R R  +
Sbjct: 121 PDLFDLNNSMTN--YSLSNTHSIGQILYTDYIHIFQISGMILLVAMVGAIVLTFRKREGV 178

Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199
           K Q   KQ+       + +++V+S KG+
Sbjct: 179 KTQSYLKQISRERSEGVKIIEVESNKGV 206


>gi|254467844|ref|ZP_05081250.1| NADH-ubiquinone oxidoreductase chain 6 [beta proteobacterium KB13]
 gi|207086654|gb|EDZ63937.1| NADH-ubiquinone oxidoreductase chain 6 [beta proteobacterium KB13]
          Length = 198

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 124/200 (62%), Gaps = 7/200 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+     FYLFS + +++S  V+T  NP+YS  SL+ AF +AAG++LLL AEF+A+  ++
Sbjct: 1   MIFTDYLFYLFSGILVLASLRVITANNPVYSALSLVLAFFSAAGIWLLLHAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSA 117
           VYVGAV+V FLF++MMLDI+IE    R    F   F + +L A L +     +V   F +
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIEALRQR----FWSYFPVALLIALLFIFEIYLVVTDKFFS 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
             + + +  + +N  +IG VLYT Y  P +++  ILL+++I AIVL +  ++  K  D  
Sbjct: 117 SSDPAGIPLEKSNTHSIGSVLYTDYLLPFQVAAVILLVAIISAIVLTMYGKKSHKAIDPK 176

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++ N ++ + +VK+KS K
Sbjct: 177 DQIKVNRNDRVRVVKMKSEK 196


>gi|330813991|ref|YP_004358230.1| NADH-ubiquinone oxidoreductase chain J [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487086|gb|AEA81491.1| NADH-ubiquinone oxidoreductase chain J [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 205

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 131/205 (63%), Gaps = 10/205 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  S+ FY FSF+ I SS +V+  +N +++VF LI  FV+ + LF+++GAEF+ M+TL+
Sbjct: 1   MLAHSIIFYFFSFITIASSLMVIASKNTVHAVFFLILDFVSISSLFIMMGAEFLGMLTLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MM++++        K GFL     G+L   +I+     M+ + + +
Sbjct: 61  VYVGAVAVLFLFVVMMINVNFS----ELKSGFLEYIPFGLLIGLVILLELGMMIATWKYK 116

Query: 121 -----LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                 + ++ K   N E++G V+YT Y +  ++SGFILL++MIGAIVL  R +  ++RQ
Sbjct: 117 PDFVPSNTIINKTITNTESLGLVIYTDYIFFFQLSGFILLVAMIGAIVLTFRRKESLRRQ 176

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           DI+ Q+     +S+ +V+VK  +G+
Sbjct: 177 DITTQVSRERTDSVELVEVKHSEGV 201


>gi|91789107|ref|YP_550059.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Polaromonas
           sp. JS666]
 gi|91698332|gb|ABE45161.1| NADH dehydrogenase subunit J [Polaromonas sp. JS666]
          Length = 217

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 126/205 (61%), Gaps = 17/205 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY+F+ + + ++F V+T RNP+++   L+ AF  AA +++LL AEF+A+  ++
Sbjct: 1   MDAKTGLFYVFAAVLLFAAFRVITARNPVHAALYLVLAFFQAAAVWILLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115
           VYVGAV+V FLF++MMLDI+I+      ++GF   F +      +I    ++++      
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDSV----RKGFWKHFPLAGTVGAIIALEMSYVLMGGFRE 116

Query: 116 -----SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                SA G++   V   +N + +GK+LY++Y YPLE++  ILL++MI AI L LR R+D
Sbjct: 117 PPKAASAPGQIGAQV---SNTKELGKLLYSEYLYPLEVAAVILLVAMIAAIALTLRQRKD 173

Query: 171 IKRQDISKQLESNPDNSIVMVKVKS 195
            K  + S Q+     + + +VK+KS
Sbjct: 174 TKYINPSDQIRVKRGDRVSLVKMKS 198


>gi|332185920|ref|ZP_08387667.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Sphingomonas sp. S17]
 gi|332014278|gb|EGI56336.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Sphingomonas sp. S17]
          Length = 203

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 122/202 (60%), Gaps = 7/202 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++ FY+F+ + I+S+ L +  RNP++SV  LI AF NAAGL +L GAEF+AM+ ++VY
Sbjct: 2   IQAIAFYIFATVVIVSAGLTIASRNPVHSVMWLILAFFNAAGLMVLCGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119
           VGAV V FLF++MMLDI++        R       + +     ++ A  F  +S  G   
Sbjct: 62  VGAVAVLFLFVVMMLDIEVAAMRAGFARYLPLGLALAVALLAEVIIA--FQAWSVGGVQL 119

Query: 120 --ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               + +  + +N++ IG +LYT+Y +  E +G +LL++MIGAIVL  R R  ++ Q+I+
Sbjct: 120 AARAAPIAPEVSNIQAIGNLLYTRYLFIFEGAGLVLLVAMIGAIVLTHRKRGGVRPQNIA 179

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           KQ    P  +I  +    G+G+
Sbjct: 180 KQNARQPHEAIRNINQPIGQGV 201


>gi|326403105|ref|YP_004283186.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum
           AIU301]
 gi|325049966|dbj|BAJ80304.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum
           AIU301]
          Length = 216

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY+F+ + ++S+ +V+T RNP++SV  LI AF+NA  LF+L GAEF+AM+ ++VYVG
Sbjct: 4   TLAFYVFAAILLLSACMVITARNPVHSVLFLILAFINAGALFVLAGAEFLAMVLVIVYVG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSR 123
           AV V FLF++MMLD+D        +R       IG IL  E+   A  + +  A    S+
Sbjct: 64  AVAVLFLFVVMMLDVDFAALREGFQRYAPLGLLIGFILMVEIGAVAIGWTITPAAHLASQ 123

Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +    +  N   +G ++YT+Y +  E+   +LL++MIGAIVL     R  +RQDIS Q +
Sbjct: 124 VPMPAHLSNTAALGDLIYTRYMFAFELVALLLLVAMIGAIVLTHSGERRSRRQDISTQHQ 183

Query: 182 SNPDNSIVMVKVKSGKG 198
              D ++ MVK+  GKG
Sbjct: 184 RPIDETLTMVKLGIGKG 200


>gi|194289168|ref|YP_002005075.1| NADH dehydrogenase subunit j [Cupriavidus taiwanensis LMG 19424]
 gi|193223003|emb|CAQ69008.1| NADH:ubiquinone oxidoreductase complex I, chain J [Cupriavidus
           taiwanensis LMG 19424]
          Length = 240

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 127/207 (61%), Gaps = 21/207 (10%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FY+F+ + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A++ ++
Sbjct: 27  MELTTTIFYVFALVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLQAEFLAILLVL 86

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114
           VYVGAV+V FLF++MM+DIDIE      +R F     + S    ++ AE+ IV   NF+ 
Sbjct: 87  VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMASIVGALIIAEMAIVLVRNFV- 141

Query: 115 FSAEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               G  + +   G      +N   +GK++YT Y Y  E++G ILL+++I A+ L LR R
Sbjct: 142 ----GTTTPVAPAGSQEPGYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRR 197

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKS 195
           +D+K QD+S QL +  D  + +V + +
Sbjct: 198 KDVKAQDVSAQLRTRRDERVRLVPMAA 224


>gi|329889340|ref|ZP_08267683.1| NADH-quinone oxidoreductase subunit J [Brevundimonas diminuta ATCC
           11568]
 gi|328844641|gb|EGF94205.1| NADH-quinone oxidoreductase subunit J [Brevundimonas diminuta ATCC
           11568]
          Length = 207

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/201 (44%), Positives = 131/201 (65%), Gaps = 4/201 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ L FYL + +A++S+ LVVT RNP++SV  LI  F +AAGLF+LL AEF+AM+ +VVY
Sbjct: 1   MQGLAFYLLATVAVVSALLVVTARNPVHSVLWLILTFFSAAGLFVLLSAEFLAMLLVVVY 60

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD+D +++ E   +   L     G+L AE+I+ +   +   A  + 
Sbjct: 61  VGAVAVLFLFVVMMLDVDFVKLREGYARYLPLAGIVAGVLLAEMIMVSITVVQGGAARDA 120

Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +  V  G    N+E IG+VLYT Y Y  + +G +LL++MIGAIVL LRHR  + RQD++ 
Sbjct: 121 TSPVPAGPDVTNIETIGRVLYTDYVYFFQAAGVVLLIAMIGAIVLTLRHRPGVHRQDLAA 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q       ++ +  V +G+G+
Sbjct: 181 QANRERAKAVEIKSVTTGQGV 201


>gi|188580276|ref|YP_001923721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium populi BJ001]
 gi|179343774|gb|ACB79186.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium populi BJ001]
          Length = 206

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 13/195 (6%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A+ S F+V+  RNP+ SV  LI AFVNAAGLF+++GAEF+AMI +VVYVGAV V FLF+
Sbjct: 14  LAVASGFMVIAARNPVTSVLFLILAFVNAAGLFVMMGAEFLAMILVVVYVGAVAVLFLFV 73

Query: 74  IMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLVF 126
           +MMLD+D        +R     G +G+ F+     EL++    + +     +  L R   
Sbjct: 74  VMMLDVDFAALRQGFQRYLPIGGLIGAIFL----IELLLVVGTWTIDPGLVQAPLGRAAH 129

Query: 127 --KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
                N E +G+VLYT Y Y  +I+G ILL++MIGAIVL LR R  +KRQ+IS Q     
Sbjct: 130 GETATNTEALGRVLYTDYVYAFQIAGLILLVAMIGAIVLTLRERTGVKRQNISVQNARTQ 189

Query: 185 DNSIVMVKVKSGKGI 199
             ++  +KV S +G+
Sbjct: 190 TMAVDTIKVPSRQGV 204


>gi|89900295|ref|YP_522766.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rhodoferax
           ferrireducens T118]
 gi|89345032|gb|ABD69235.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodoferax
           ferrireducens T118]
          Length = 219

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 123/207 (59%), Gaps = 15/207 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++ FFY FS + + ++F V+T RNP+Y+V  L+ AF  AA ++LLL AEF+A+  ++
Sbjct: 1   MDVKTGFFYFFSIVLLFAAFRVITSRNPVYAVLYLVLAFFQAAAIWLLLRAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF----FIGILAAELIVCASNFMVFS 116
           VYVGAV+V FLF++MMLDI ++      + GF   F     +G+  A L + A     F 
Sbjct: 61  VYVGAVMVLFLFVVMMLDIKVD----GLREGFWKHFPLAATVGVFIA-LEMAAVLMGGFR 115

Query: 117 AEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              E    V  G      +N   +GKVLY QY YPLEI+G ILL++MI AI L LR R+D
Sbjct: 116 VGDEPQSAVALGQASAEFSNTRELGKVLYGQYVYPLEIAGAILLVAMIAAIALTLRQRKD 175

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            K+   S Q+     + + ++K+ S K
Sbjct: 176 SKQVSPSMQVRVKARDRMTVLKMASTK 202


>gi|73540673|ref|YP_295193.1| NADH dehydrogenase subunit J [Ralstonia eutropha JMP134]
 gi|72118086|gb|AAZ60349.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
          Length = 240

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 126/202 (62%), Gaps = 11/202 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FY+F+ + ++S+  V+T +NP++S   L+ +F  AA ++LLL AEF+A++ ++
Sbjct: 27  MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLSFFTAAAIWLLLKAEFLAILLVL 86

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114
           VYVGAV+V FLF++MM+DIDIE      +R F     L S    ++ AE+ IV   NF+ 
Sbjct: 87  VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPLASVVGALIIAEMAIVLVRNFIG 142

Query: 115 FSAEGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
            +A    +     G +N   +GK++Y  Y Y  E++G ILL+++I A+ L LR R+D+K 
Sbjct: 143 TTAPVLPAGSQDPGYSNTAALGKLIYNDYIYAFEVAGIILLVAIIAAVALTLRRRKDVKG 202

Query: 174 QDISKQLESNPDNSIVMVKVKS 195
           QDI  QL +  D+ + +V + +
Sbjct: 203 QDIPSQLRTRRDDRVRLVAMPA 224


>gi|148259941|ref|YP_001234068.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Acidiphilium
           cryptum JF-5]
 gi|146401622|gb|ABQ30149.1| NADH dehydrogenase subunit J [Acidiphilium cryptum JF-5]
          Length = 216

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY+F+ + ++S+ +V+T RNP++SV  LI AF+NA  LF+L GAEF+AM+ ++VYVG
Sbjct: 4   TLAFYVFAAILLLSACMVITARNPVHSVLFLILAFINAGALFVLAGAEFLAMVLVIVYVG 63

Query: 65  AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           AV V FLF++MMLD+D   + E  ++   LG     IL  E+   A  + +  A    S+
Sbjct: 64  AVAVLFLFVVMMLDVDFAALREGFQRYAPLGLLIGFILMVEIGAVAIGWTITPAAHLASQ 123

Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +    +  N   +G ++YT+Y +  E+   +LL++MIGAIVL     R  +RQDIS Q +
Sbjct: 124 VPMPAHLSNTAALGDLIYTRYMFAFELVALLLLVAMIGAIVLTHSGERRSRRQDISMQHQ 183

Query: 182 SNPDNSIVMVKVKSGKG 198
              D ++ MVK+  GKG
Sbjct: 184 RPIDETLTMVKLGIGKG 200


>gi|296536147|ref|ZP_06898275.1| NADH-quinone oxidoreductase subunit J [Roseomonas cervicalis ATCC
           49957]
 gi|296263518|gb|EFH10015.1| NADH-quinone oxidoreductase subunit J [Roseomonas cervicalis ATCC
           49957]
          Length = 241

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 127/205 (61%), Gaps = 17/205 (8%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY+F+ + I S+ +VVT RNP++SV  LI AF NAA LFL+ GAEF+AMI ++VYVG
Sbjct: 4   ALAFYVFAAILIASAVMVVTSRNPVHSVLFLILAFFNAAALFLIAGAEFLAMILVIVYVG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSAEG 119
           AV V FLFI+MMLDID      R + GF     +G+    IL  EL+    ++  F+ + 
Sbjct: 64  AVAVLFLFIVMMLDIDFA----RLREGFQRYAPIGAVIGAILFLELLFVFGSWQ-FAPDA 118

Query: 120 ELSRLVFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQ 174
              RL    +    N E +G ++YT Y +  +++G ILL++MIGAIVL LR +  + KRQ
Sbjct: 119 AALRLNPAPDAGVTNTEALGLLVYTDYVFLFQLAGLILLVAMIGAIVLTLRDKPANSKRQ 178

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           DI+ Q+      ++ M +V S  G+
Sbjct: 179 DIAVQVARG--EAVTMKQVPSRAGL 201


>gi|325983280|ref|YP_004295682.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas
           sp. AL212]
 gi|325532799|gb|ADZ27520.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas
           sp. AL212]
          Length = 201

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 127/204 (62%), Gaps = 12/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ Q + FY FS + I+S+  V+ VRNP+ S   L+ +FV  AGL+LLL AEF+A+  ++
Sbjct: 1   MIFQDILFYSFSAILIVSALGVIIVRNPVNSALLLVLSFVTCAGLWLLLEAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV----FS 116
           VYVGAV+V FLF++MMLDI+++    R + GF   F  G + A +IV   + ++    F 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLD----RLREGFWKWFPFGAMIALVIVVEISMVLMGKYFG 116

Query: 117 AEGELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
            E E+     KG   +N + +G+++YT+Y Y  E++  +LL++MI AI L LRHR D K 
Sbjct: 117 YE-EMPIPEPKGADYSNTKELGRLIYTEYVYAFELAAVLLLVAMIAAIALTLRHREDKKS 175

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
            +  KQ++   ++ I +V + + K
Sbjct: 176 TNPFKQVKVKKEDRIRIVSMSAEK 199


>gi|170696390|ref|ZP_02887519.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           graminis C4D1M]
 gi|170138718|gb|EDT06917.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           graminis C4D1M]
          Length = 228

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 124/208 (59%), Gaps = 14/208 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     +R    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDVLRKDFRRFVPMATVVG----AIIVLETALILWHGYGA 116

Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            S +V             +N   IGKV+YT Y +  E++G +LL+++I AI L   H++D
Sbjct: 117 TSTVVPDTTAAAGGMGDWSNTRLIGKVIYTDYIFAFEVAGLVLLVAIIAAIALTTSHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGKG 198
            KRQ IS Q++    + + +VK+ S K 
Sbjct: 177 SKRQKISDQVKVRAQDRVRVVKMPSEKS 204


>gi|207723882|ref|YP_002254280.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia
           solanacearum MolK2]
 gi|206589087|emb|CAQ36049.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia
           solanacearum MolK2]
          Length = 210

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 122/204 (59%), Gaps = 10/204 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114
           VYVGAV+V FLF++MM+D+DIE      +R F     +G+F   I+  E+ +V    FM 
Sbjct: 61  VYVGAVMVLFLFVVMMIDVDIE----HLRRDFWTYVPMGAFVGAIIIMEMAVVLTKAFMG 116

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            S   +       G N + +GK++YT Y Y  EI+G +LLL+++ A+ L  R R+D K Q
Sbjct: 117 RSQPVQELPKALSGPNTQALGKLIYTDYLYAFEIAGAVLLLAIVAAVALTARRRKDTKAQ 176

Query: 175 DISKQLESNPDNSIVMVKVKSGKG 198
            ++ Q+     + + +V + + K 
Sbjct: 177 KVADQVRVQRKDRVRLVSMPAEKA 200


>gi|83746306|ref|ZP_00943359.1| NADH-quinone oxidoreductase chain J [Ralstonia solanacearum UW551]
 gi|207742744|ref|YP_002259136.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia
           solanacearum IPO1609]
 gi|300703651|ref|YP_003745253.1| NADH-quinone oxidoreductase subunit j [Ralstonia solanacearum
           CFBP2957]
 gi|83727056|gb|EAP74181.1| NADH-quinone oxidoreductase chain J [Ralstonia solanacearum UW551]
 gi|206594138|emb|CAQ61065.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia
           solanacearum IPO1609]
 gi|299071314|emb|CBJ42632.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum
           CFBP2957]
          Length = 210

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 122/204 (59%), Gaps = 10/204 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114
           VYVGAV+V FLF++MM+DIDIE      +R F     +G+F   ++  E+ +V    FM 
Sbjct: 61  VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMG 116

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            S   +       G N + +GK++YT Y Y  EI+G +LLL+++ A+ L  R R+D K Q
Sbjct: 117 RSQPVQELPKALSGPNTQALGKLIYTDYLYAFEIAGAVLLLAIVAAVALTARRRKDTKAQ 176

Query: 175 DISKQLESNPDNSIVMVKVKSGKG 198
            ++ Q+     + + +V + + K 
Sbjct: 177 KVADQVRVQRKDRVRLVSMPAEKA 200


>gi|94496471|ref|ZP_01303048.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas
           sp. SKA58]
 gi|94424217|gb|EAT09241.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas
           sp. SKA58]
          Length = 203

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 125/201 (62%), Gaps = 15/201 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+ + + S  L +  RNP++SV  LI AF NAAGL +LLGAEF+AM+ ++VYVGAV 
Sbjct: 7   FYLFATIVVCSGALTILSRNPVHSVLWLILAFFNAAGLMILLGAEFIAMLLVIVYVGAVA 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-----GSFFIGILAAELIVCASNFMVFSAEGELS 122
           V FLF++MMLDID   AE R   GF+     G     +L AE+++    + V     EL+
Sbjct: 67  VLFLFVVMMLDIDF--AELRA--GFVSYLPFGLLVALVLLAEIVLGIGLWSV--GPIELA 120

Query: 123 RLVFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +     N    N++ IG +LYT+Y +  E +G +LL++MIGAIVL  R R  ++ Q+I++
Sbjct: 121 QRAGPVNPELSNIQAIGALLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRPQNIAR 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q +  P +++  V    G+G+
Sbjct: 181 QNQRRPQDAVRNVNQPVGQGV 201


>gi|296444803|ref|ZP_06886766.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylosinus
           trichosporium OB3b]
 gi|296257751|gb|EFH04815.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylosinus
           trichosporium OB3b]
          Length = 200

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 124/200 (62%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + FFYLFS + I S+F V+  RNP++SV  LI AFVN AGLFLL GAEF+AMI +VVY
Sbjct: 1   MAAAFFYLFSAVLIASAFAVIVARNPVHSVLFLILAFVNGAGLFLLAGAEFLAMILVVVY 60

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD+D  E+ +   K   LG+    ++  EL + A  +    +  E 
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELRQGFSKHLPLGAGVGAVVLIELGMIAVGWQSAPSALEA 120

Query: 122 SRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           ++       +N   +G+VLYT+Y    + S  +LL +MIGAIVL L HR  +KRQ I++Q
Sbjct: 121 AQTPIAAGVSNTAALGQVLYTKYFVFFQASALVLLTAMIGAIVLTLHHRPGVKRQKIAEQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
                +N I + KV S  G+
Sbjct: 181 NARTRENVIEIKKVPSRAGV 200


>gi|330994063|ref|ZP_08317993.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter sp.
           SXCC-1]
 gi|329759009|gb|EGG75523.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter sp.
           SXCC-1]
          Length = 257

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 126/201 (62%), Gaps = 4/201 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+F+ + ++S+ +VV  RNP++SV  LI AF NAAGLFL+ GAEF+AM  ++VY
Sbjct: 2   MTQIVFYVFAAVLVLSATMVVCARNPVHSVLFLILAFFNAAGLFLIAGAEFLAMTLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD++   + E  ++   +G    G+L  EL++  + +   S   ++
Sbjct: 62  VGAVAVLFLFVVMMLDVNFTRMREGVQRYAPIGGLVGGVLLVELVMAFARWRSASNIDQI 121

Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           + LV       N   +G V+YT Y +  +    +LL++MIGAIVL LR R   +RQ+I +
Sbjct: 122 AHLVPSSPTRTNTAALGDVIYTHYIFLFQSCALVLLVAMIGAIVLTLRDRPSGRRQNIDR 181

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q +  P +S+ M++V  G G+
Sbjct: 182 QHDRVPHDSLEMLQVPLGAGV 202


>gi|321268733|gb|ADW79182.1| NADH dehydrogenase subunit 6 [Cyanophora paradoxa]
          Length = 220

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/217 (40%), Positives = 127/217 (58%), Gaps = 39/217 (17%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           LFF+LFS  AIISSF+ +T  + IYSVF LI  F NAAGL ++LGAEF+AM+ LVVY+GA
Sbjct: 12  LFFFLFSLGAIISSFIAITTNSSIYSVFYLILVFFNAAGLLIMLGAEFLAMLFLVVYLGA 71

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGS--FFIGIL---------------------- 101
           + + FLF+IMML+I I      K +  LG+  FFI +L                      
Sbjct: 72  IAILFLFVIMMLNIKI---NQFKNKIILGAQVFFITLLFSLIYINIPHNSFINLSEILTF 128

Query: 102 --AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK-----VLYTQYAYPLEISGFILL 154
             + +LI+  +N+ +     +L+ L +  N+   I       ++YTQYAY   +S  ILL
Sbjct: 129 NDSEKLILFLNNYSI-----QLNNLFYNINSFNYITNSHQFFIVYTQYAYYFLLSALILL 183

Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMV 191
           +S+IGAIVL L  + ++K+QD++KQ+  N   +I  V
Sbjct: 184 VSLIGAIVLTLHKKINVKKQDLNKQINRNFQTTIKTV 220


>gi|134296424|ref|YP_001120159.1| NADH dehydrogenase subunit J [Burkholderia vietnamiensis G4]
 gi|134139581|gb|ABO55324.1| NADH dehydrogenase subunit J [Burkholderia vietnamiensis G4]
          Length = 216

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 125/204 (61%), Gaps = 11/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDFL----RRDFKKFVPMATVVGAIIVVETALILWRGYGD 116

Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              +       +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  RH +D KR
Sbjct: 117 THTVHAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTARHGKDSKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
           Q +S Q++   ++ + +VK+++ K
Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEADK 200


>gi|163850508|ref|YP_001638551.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium extorquens PA1]
 gi|218529205|ref|YP_002420021.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium chloromethanicum CM4]
 gi|240137573|ref|YP_002962044.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           [Methylobacterium extorquens AM1]
 gi|254560044|ref|YP_003067139.1| NADH-quinone oxidoreductase subunit J [Methylobacterium extorquens
           DM4]
 gi|163662113|gb|ABY29480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium extorquens PA1]
 gi|218521508|gb|ACK82093.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium chloromethanicum CM4]
 gi|240007541|gb|ACS38767.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           [Methylobacterium extorquens AM1]
 gi|254267322|emb|CAX23154.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           [Methylobacterium extorquens DM4]
          Length = 206

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 118/193 (61%), Gaps = 13/193 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           + S F+V+  RNP+ SV  LI AFVNAAGLF+L+GAEF+AMI +VVYVGAV V FLF++M
Sbjct: 16  VASGFMVIAARNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVVVYVGAVAVLFLFVVM 75

Query: 76  MLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLVF-- 126
           MLD+D        +R     G +G+ F+     EL++    + +     +  L R     
Sbjct: 76  MLDVDFAALRQGFQRYLPIGGLIGAIFL----IELVLVVGTWTIDPGLVQAPLGRAAHGE 131

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186
              N E +G+VLYT Y Y  +I+G ILL++MIGAIVL LR R  +KRQ+I+ Q       
Sbjct: 132 TATNTEALGRVLYTDYVYAFQIAGLILLVAMIGAIVLTLRERTGVKRQNIAVQNARTQGM 191

Query: 187 SIVMVKVKSGKGI 199
           ++  +KV S +G+
Sbjct: 192 AVDTIKVPSRQGV 204


>gi|295676046|ref|YP_003604570.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1002]
 gi|295435889|gb|ADG15059.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1002]
          Length = 230

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 125/209 (59%), Gaps = 18/209 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+     L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVACALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI+++V     KR      F+ + +A   +IV  +  +++   
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDVLRKDFKR------FVPMASAVGAIIVIETALILWHGY 114

Query: 119 GELSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           G  +  +             +N   IGKV+YT Y +  EI+G ILL+++I AI L   H+
Sbjct: 115 GATATALHDTASAAAGMGDWSNTRLIGKVIYTNYIFAFEIAGLILLVAIIAAIALTTSHK 174

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           +D KRQ++S Q++    + + +VK+ S K
Sbjct: 175 KDSKRQNVSAQVKVRAQDRVRVVKMPSEK 203


>gi|209518506|ref|ZP_03267327.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. H160]
 gi|209501051|gb|EEA01086.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. H160]
          Length = 230

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 124/209 (59%), Gaps = 18/209 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+     L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVACALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MMLD++++V     KR      F+ + +A   +IV  +  +++   
Sbjct: 61  VYVGAVMVLFLFVVMMLDVNLDVLRKDFKR------FVPMASAVGAIIVVETALILWHGY 114

Query: 119 GELSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           G  +  +             +N   IGKV+YT Y +  EI+G ILL+++I AI L   H+
Sbjct: 115 GATTAALHDTASAAAGMGDWSNTRVIGKVIYTNYIFAFEIAGLILLVAIIAAIALTTSHK 174

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           +D KRQ++S Q+     + + +VK+ S K
Sbjct: 175 KDSKRQNVSAQVRVRAQDRVRVVKMPSEK 203


>gi|71083591|ref|YP_266310.1| NADH dehydrogenase I subunit J [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91761988|ref|ZP_01263953.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71062704|gb|AAZ21707.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717790|gb|EAS84440.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 210

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 7/206 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++FFY FSF+AI+S+ +V   +N ++SVF LI  F++ + LF+++GAEF+ MI L+
Sbjct: 1   MLAHAIFFYTFSFIAIVSAIMVTVSKNTVHSVFFLILDFISISCLFIMIGAEFLGMIMLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIE-----VAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV V FLF++MML++  +      A+   K   +G     I+  ELI+    +   
Sbjct: 61  VYVGAVAVLFLFVVMMLNVAQQKNQWFSAQESSKHIPIGLIVSVIIFFELIIVIGGWKYK 120

Query: 116 SAEGELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                   L    N  N  +IG VLYT Y +  ++SG ILL++MIGAIVL  R R  +KR
Sbjct: 121 PDLVSAMSLTIDKNITNTHSIGYVLYTDYIHVFQLSGMILLVAMIGAIVLTFRQRSGVKR 180

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q    Q+     + + ++ V++ KG+
Sbjct: 181 QSYFSQISRERSDGVELIDVENNKGV 206


>gi|83592899|ref|YP_426651.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575813|gb|ABC22364.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodospirillum rubrum ATCC 11170]
          Length = 205

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 132/208 (63%), Gaps = 13/208 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++Q+L FY+ + + + S+F+VV  RNP++SV  LI  FVN+AGLFLL+GAEFVAM+ +V
Sbjct: 1   MIIQALIFYMLAAIMVASAFMVVISRNPVHSVLWLILTFVNSAGLFLLMGAEFVAMVVVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVF 115
           VYVGAV V FLF++MMLDI+      R + GFL    +G     +L AE+ V A  + + 
Sbjct: 61  VYVGAVAVLFLFVVMMLDINYL----RLREGFLSYMPLGAAMGVVLLAEIAVLAGGWAMA 116

Query: 116 SAEGELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                L R+         N + IG+VLYT Y Y  + +G +LL++MIG+I+L  R    +
Sbjct: 117 PDAMGLRRVPMVDPAALTNTQAIGQVLYTDYIYLFQAAGLVLLVAMIGSIMLTHRANPLV 176

Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199
           KRQ+++ Q+    + ++ + KV +G+GI
Sbjct: 177 KRQNVADQIARRKERTLKLNKVPTGRGI 204


>gi|121609753|ref|YP_997560.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Verminephrobacter eiseniae EF01-2]
 gi|121554393|gb|ABM58542.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Verminephrobacter eiseniae EF01-2]
          Length = 223

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 123/214 (57%), Gaps = 25/214 (11%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F V+T RNP+++V  LI AF  AA ++LLL AEF+A+  ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVITARNPVHAVLYLILAFSQAAAVWLLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC------------ 108
           VY+GAV+V FLF++MMLDI I+      +RGF   F +      LI              
Sbjct: 61  VYLGAVMVLFLFVVMMLDIHID----SLRRGFWKHFPLAASVGALIALEMAAVLMGGFRA 116

Query: 109 -----ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                A   +   A G+L       +N + +GK+LYT+Y +P+EI+  ILL++MI AI L
Sbjct: 117 TDEPKAGVAIADDAAGQL----LAYSNSKALGKLLYTEYLFPVEIAAVILLVAMIAAIAL 172

Query: 164 MLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
            LR R+D K  D + Q+     + + +V++ + +
Sbjct: 173 TLRQRKDSKAIDAAAQIRVRASDRLELVRMAATR 206


>gi|30249728|ref|NP_841798.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas
           europaea ATCC 19718]
 gi|30180765|emb|CAD85679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas
           europaea ATCC 19718]
          Length = 201

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 130/204 (63%), Gaps = 12/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q   FY  + + +I++  V+T+RNP++S   L+ AFV ++GL+LLL AEF+A++ ++
Sbjct: 1   MNLQDFVFYSLASVVVIAALGVITLRNPVHSALLLVLAFVTSSGLWLLLEAEFLAIVLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAE--LIVCASNFM 113
           VYVGAV+V FLF++MMLDI+++    R + GF   F  G     I+  E  +++ +  F 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLD----RMREGFWKWFPFGAILALIMTGEIGIVLMSKQFG 116

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             + +  +S+ V   +N + +G++LYT Y Y  E+S  ILL++M+ AI + LR+R D K 
Sbjct: 117 PENIQIPVSKSV-DYSNTKELGQLLYTDYVYAFELSAVILLVAMVAAIAITLRYRTDKKS 175

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
            ++SKQ+ ++ +  + ++ + + +
Sbjct: 176 SNVSKQVAASREKRLKVISIPAER 199


>gi|83718554|ref|YP_441623.1| NADH dehydrogenase subunit J [Burkholderia thailandensis E264]
 gi|167580431|ref|ZP_02373305.1| NADH dehydrogenase subunit J [Burkholderia thailandensis TXDOH]
 gi|167618540|ref|ZP_02387171.1| NADH dehydrogenase subunit J [Burkholderia thailandensis Bt4]
 gi|257139681|ref|ZP_05587943.1| NADH dehydrogenase subunit J [Burkholderia thailandensis E264]
 gi|83652379|gb|ABC36442.1| NADH dehydrogenase I, J subunit [Burkholderia thailandensis E264]
          Length = 218

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 127/205 (61%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSA 117
           VYVGAV+V FLF++MMLDI+I+V     +R F     +  +   +IV  +  ++   + A
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDVL----RRDFKRFVPMATVVGAIIVVETALILWRGYGA 116

Query: 118 EGELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            G   R +  G      N + IGKV+YT Y +  EI+G +LL+++I A+ L  +  +D K
Sbjct: 117 TGSPVRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ +S+Q++   ++ + +VK+++ K
Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201


>gi|325524299|gb|EGD02411.1| NADH:ubiquinone oxidoreductase subunit J [Burkholderia sp. TJI49]
          Length = 216

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 122/200 (61%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G   ++   LI+        +A
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDFLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHAA 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +  +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KRQ +S
Sbjct: 121 HAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   D+ + +VK+++ K
Sbjct: 181 DQVKVRRDDRVRLVKMEAEK 200


>gi|167585981|ref|ZP_02378369.1| NADH dehydrogenase subunit J [Burkholderia ubonensis Bu]
          Length = 217

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDFL----RRDFKKFVPMATVVGAIIVVETALVLWHGYGA 116

Query: 121 LS---RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                R + +G      N   IGKV+YT Y +  EI+G +LL+++I A+ L  R  +D K
Sbjct: 117 TEAPVRAMAQGAMATWPNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTERKGKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ +S Q++   D+ + +VK+++ K
Sbjct: 177 RQRVSDQVKVRRDDRVRLVKMEADK 201


>gi|167836058|ref|ZP_02462941.1| NADH dehydrogenase subunit J [Burkholderia thailandensis MSMB43]
          Length = 218

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+V     +R F     +  +   +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDVL----RRDFRRFVPMATVVGAIIVVETALILWRGYGA 116

Query: 121 LSRLVFK--------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               V            N + IGKV+YT Y +  EI+G +LL+++I A+ L  +  +D K
Sbjct: 117 TGSPVHDMAAGAAAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ +S+Q++   ++ + +VK+++ K
Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201


>gi|217979058|ref|YP_002363205.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocella
           silvestris BL2]
 gi|217504434|gb|ACK51843.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocella
           silvestris BL2]
          Length = 201

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 129/204 (63%), Gaps = 15/204 (7%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +LFFYLFS + I S+F V+T RNP++SV  LI AF NAAGLFLLLGAEF+AM+ +VVYVG
Sbjct: 4   ALFFYLFSAVLIASAFAVITSRNPVHSVLFLILAFFNAAGLFLLLGAEFLAMLLVVVYVG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVFSAEG 119
           AV V FLF++MMLD+D        K+GF+    +G     I+  EL++    + V +A  
Sbjct: 64  AVAVLFLFVVMMLDVDFA----EFKQGFMRYLPVGGAIGAIVLLELVLVVGGWRVDAA-- 117

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            L+ +        +N   +G+VLYTQYA     +G +LL +MIGAI+L L H+  IKRQD
Sbjct: 118 SLANVASPAPPAMSNTLALGRVLYTQYACLFIAAGMVLLTAMIGAIILTLHHKVGIKRQD 177

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I+ Q    P +++ + K    +G+
Sbjct: 178 IAAQNARTPKDAVELRKKSFRQGV 201


>gi|17546772|ref|NP_520174.1| NADH dehydrogenase subunit J [Ralstonia solanacearum GMI1000]
 gi|17429072|emb|CAD15760.1| probable transmembrane nadh dehydrogenaseI(chain j) oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 210

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 120/197 (60%), Gaps = 10/197 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114
           VYVGAV+V FLF++MM+D+DIE      +R F     +G+F   ++  E+ +V    FM 
Sbjct: 61  VYVGAVMVLFLFVVMMIDVDIE----HLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMG 116

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            S   +       G N + +GK++YT Y Y  E++G +LLL+++ A+ L  R R+D K Q
Sbjct: 117 RSQPVQELPKALSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQ 176

Query: 175 DISKQLESNPDNSIVMV 191
           +++ Q+     + + +V
Sbjct: 177 NVADQIRVQRKDRVRLV 193


>gi|57239208|ref|YP_180344.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579166|ref|YP_197378.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617219|ref|YP_196418.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Gardel]
 gi|57161287|emb|CAH58208.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416831|emb|CAI27944.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Gardel]
 gi|58417792|emb|CAI26996.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 200

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 122/197 (61%), Gaps = 7/197 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF+ F+ + I+SS  V+ V NP+YSV  LI  F  ++ LF+LLGAE +AM+ ++VY
Sbjct: 1   MIYFFFHFFAVLVILSSIAVIYVSNPVYSVLFLILTFFMSSTLFILLGAELIAMLVIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-FSAEGEL 121
           VGAV V FLF++MMLDI+      R K GF   F IG+++  ++     F++  SA  +L
Sbjct: 61  VGAVAVLFLFVVMMLDINYS----RFKHGFTKYFVIGLISGMILFVNMVFIIKHSATADL 116

Query: 122 -SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQ 179
            +      +NV  IG ++YT+Y Y   +SG +LL+S+IG++VL LR +  +I+RQ    Q
Sbjct: 117 VTESKPYVSNVMAIGNLIYTKYMYIFHLSGVLLLISIIGSLVLTLRDKGNNIRRQSPDIQ 176

Query: 180 LESNPDNSIVMVKVKSG 196
           +  +P    V VKV+ G
Sbjct: 177 ISRSPFVKYVDVKVRGG 193


>gi|167562186|ref|ZP_02355102.1| NADH dehydrogenase subunit J [Burkholderia oklahomensis EO147]
 gi|167569431|ref|ZP_02362305.1| NADH dehydrogenase subunit J [Burkholderia oklahomensis C6786]
          Length = 218

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 127/205 (61%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     KR    +  +G     +I+  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVDVLRRDFKRFVPMATAVG----AIIIVETALILWRGYGA 116

Query: 121 LS---RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +   R V  G      N + IGKV+YT Y +  EI+G +LL+++I A+ L  +  +D K
Sbjct: 117 TASPVRDVAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ +S+Q++   ++ + +VK+++ K
Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201


>gi|114777370|ref|ZP_01452367.1| NADH dehydrogenase I chain J [Mariprofundus ferrooxydans PV-1]
 gi|114552152|gb|EAU54654.1| NADH dehydrogenase I chain J [Mariprofundus ferrooxydans PV-1]
          Length = 194

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 121/196 (61%), Gaps = 10/196 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++++FF LF+ ++++S   VV  RN ++SV  LIF F NAAGLF LL AEF+ +I +++Y
Sbjct: 2   LETVFFNLFAGLSVLSGMGVVLARNTMHSVMFLIFCFFNAAGLFFLLDAEFIGIIMILIY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI----VCASNFMVFS-- 116
           VGAV+V F F++MML+I+      R + GFL    +G L A ++    + A+   VFS  
Sbjct: 62  VGAVMVLFTFVVMMLEIN----TARMREGFLQYLPLGGLVAIVLLVEFISAAVSGVFSSG 117

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           A      L    NN   IG+VLYT+Y    EI+  ILL+++IGAIVL LR R+D K Q I
Sbjct: 118 AMATADHLPQSVNNTVEIGQVLYTKYLLGFEIAALILLVALIGAIVLTLRTRKDAKYQKI 177

Query: 177 SKQLESNPDNSIVMVK 192
           + Q+    ++ +  V+
Sbjct: 178 AAQVGVRKEDRMRKVR 193


>gi|302879332|ref|YP_003847896.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gallionella
           capsiferriformans ES-2]
 gi|302582121|gb|ADL56132.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gallionella
           capsiferriformans ES-2]
          Length = 200

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/192 (37%), Positives = 125/192 (65%), Gaps = 8/192 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+ + +++   VV  RNP+++   L+ AF +AAG+++LL AEF+A+  ++VYVGAV+
Sbjct: 8   FYLFATITVLAGVGVVVARNPVHAALFLVLAFCSAAGIWMLLEAEFLAITLILVYVGAVM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-GELSRLVF 126
           V FLF++MMLDI++     + + GF   F  G L A L+V    +++ S +  ++S+ + 
Sbjct: 68  VLFLFVVMMLDINLV----KLREGFWRWFPFGALLAGLMVFEMVWVLGSRQTADVSKAIV 123

Query: 127 KG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
                +N + +G+++YTQY YP EI+  ILL++M+ AI L LR R  +K Q+++ Q++  
Sbjct: 124 HAADYSNTKELGRLIYTQYVYPFEIAAVILLVAMVAAIALTLRRRAGVKSQNVADQVKVK 183

Query: 184 PDNSIVMVKVKS 195
             + + +V +KS
Sbjct: 184 KADRLRIVSMKS 195


>gi|187929284|ref|YP_001899771.1| NADH dehydrogenase subunit J [Ralstonia pickettii 12J]
 gi|187726174|gb|ACD27339.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ralstonia
           pickettii 12J]
          Length = 210

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 123/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY F+ + ++++  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFALVLVLAALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG----SFFIG--ILAAELIVCASNFM- 113
           VYVGAV+V FLF++MM+DIDIE      +R F      + F+G  I+    +V    FM 
Sbjct: 61  VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMAAFVGVVIILEMAVVLTKTFMG 116

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 EL +  F G N + +GK++YT Y Y  E++G +LLL+++ A+ L  R R+D K 
Sbjct: 117 RVQPVQELPK-GFTGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDTKA 175

Query: 174 QDISKQLESNPDNSIVMVKVKSGKG 198
           Q++S Q+     + + +V + + K 
Sbjct: 176 QNVSDQIRVKRKDRVRLVSMPAEKS 200


>gi|300691034|ref|YP_003752029.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum
           PSI07]
 gi|299078094|emb|CBJ50737.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum
           PSI07]
          Length = 210

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 119/197 (60%), Gaps = 10/197 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114
           VYVGAV+V FLF++MM+D+DIE      +R F     +G+F   ++  E+ +V    FM 
Sbjct: 61  VYVGAVMVLFLFVVMMIDVDIE----NLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMG 116

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            S   +       G N + +GK++YT Y Y  E++G +LLL+++ A+ L  R R+D K Q
Sbjct: 117 RSQPVQELPKTLSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQ 176

Query: 175 DISKQLESNPDNSIVMV 191
            ++ Q+     + + +V
Sbjct: 177 KVADQIRVQRKDRVRLV 193


>gi|241663475|ref|YP_002981835.1| NADH dehydrogenase subunit J [Ralstonia pickettii 12D]
 gi|309781861|ref|ZP_07676594.1| NADH dehydrogenase (ubiquinone), J subunit [Ralstonia sp.
           5_7_47FAA]
 gi|240865502|gb|ACS63163.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ralstonia
           pickettii 12D]
 gi|308919502|gb|EFP65166.1| NADH dehydrogenase (ubiquinone), J subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 210

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 123/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY F+ + ++++  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFALVLVLAALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG----SFFIG--ILAAELIVCASNFM- 113
           VYVGAV+V FLF++MM+DIDIE      +R F      + F+G  I+    +V    FM 
Sbjct: 61  VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMAAFVGVVIILEMAVVLTKTFMG 116

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 EL +  F G N + +GK++YT Y Y  E++G +LLL+++ A+ L  R R+D K 
Sbjct: 117 RVQPVQELPK-GFNGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDTKA 175

Query: 174 QDISKQLESNPDNSIVMVKVKSGKG 198
           Q++S Q+     + + +V + + K 
Sbjct: 176 QNVSDQIRVKRKDRVRLVSMPAEKS 200


>gi|299066342|emb|CBJ37526.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum
           CMR15]
          Length = 210

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 120/197 (60%), Gaps = 10/197 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114
           VYVGAV+V FLF++MM+D+DIE      +R F     +G+F   ++  E+ +V    FM 
Sbjct: 61  VYVGAVMVLFLFVVMMIDVDIE----HLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMG 116

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            S   +       G N + +GK++YT Y Y  E++G +LLL+++ A+ L  R R+D K Q
Sbjct: 117 RSQPVQELPKALSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQ 176

Query: 175 DISKQLESNPDNSIVMV 191
           +++ Q+     + + ++
Sbjct: 177 NVADQVRVQRKDRVRLI 193


>gi|332528760|ref|ZP_08404737.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Hylemonella
           gracilis ATCC 19624]
 gi|332041826|gb|EGI78175.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Hylemonella
           gracilis ATCC 19624]
          Length = 217

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 127/205 (61%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++ FF+LFS + +I++  VVT RNP+++V  L+ AF  A+ ++LLL AEF+A+  ++
Sbjct: 1   MDVKTGFFFLFSAVLLIAALRVVTARNPVHAVLFLMLAFSQASAIWLLLQAEFLAVALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VY+GAV+V FLF++MMLDI I+    + ++GF     + +L   ++V     ++ +    
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRID----QLRQGFWKHLPLALLLGGIVVVEMAAVLLTGFDM 116

Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  +L   V + +N + +G +LYT+Y +P++I+  ILL++MI AI L LR R+D K
Sbjct: 117 VDPQVAAQLPAGVAEESNAKALGILLYTRYVWPIQIAAAILLVAMIAAIALTLRARKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
             D S Q+     + + +VKV+  +
Sbjct: 177 AIDPSIQVRVRAADRLQLVKVEPTR 201


>gi|296283849|ref|ZP_06861847.1| NADH dehydrogenase I, J subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 206

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/209 (42%), Positives = 132/209 (63%), Gaps = 16/209 (7%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           ++Q++ FYLF+ M I S  L +  RNP++SV  LI AF NAAGL +LLGAEF+AM+ +VV
Sbjct: 1   MIQAIAFYLFATMVIASGVLTIMSRNPVHSVLWLILAFFNAAGLMVLLGAEFIAMLLVVV 60

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI----------VCASN 111
           YVGAV V FLF++MMLD+D+  AE R   GF+ +F +GI  A ++          + A  
Sbjct: 61  YVGAVAVLFLFVVMMLDVDM--AELRA--GFIKNFPLGIAIALVLLAELVLGIGALGAGP 116

Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
             + +A G  +      +N+ENIG +LY++Y +  E +G ILL++MIGAIVL  R  +  
Sbjct: 117 LELGTASGA-NAPNLANSNIENIGALLYSKYIFVFEAAGLILLVAMIGAIVLTHRDLKTT 175

Query: 172 K-RQDISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+I+KQ+  NP  +  M +   G+G+
Sbjct: 176 RGHQNITKQVRRNPKEATQMKQPTVGEGV 204


>gi|115352329|ref|YP_774168.1| NADH dehydrogenase subunit J [Burkholderia ambifaria AMMD]
 gi|170698118|ref|ZP_02889198.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           ambifaria IOP40-10]
 gi|171316312|ref|ZP_02905533.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           ambifaria MEX-5]
 gi|115282317|gb|ABI87834.1| NADH dehydrogenase subunit J [Burkholderia ambifaria AMMD]
 gi|170136976|gb|EDT05224.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           ambifaria IOP40-10]
 gi|171098538|gb|EDT43339.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           ambifaria MEX-5]
          Length = 216

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVVETALILWRGYGD 116

Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              +       +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KR
Sbjct: 117 THTVHAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
           Q +S Q++   ++ + +VK+++ K
Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEAEK 200


>gi|82702229|ref|YP_411795.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosospira
           multiformis ATCC 25196]
 gi|82410294|gb|ABB74403.1| NADH dehydrogenase subunit J [Nitrosospira multiformis ATCC 25196]
          Length = 201

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 122/204 (59%), Gaps = 12/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY FS + + S+  V+T RNP++S   L+ AF  +AGL+LLL AEF+A+  ++
Sbjct: 1   MSFTDIIFYFFSAVLVASALGVITARNPVHSALLLVLAFFASAGLWLLLEAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VYVGAV+V FLF++MMLDI++     R + GF   F  G+L   L++     MV + +  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINL----ARLREGFWKWFPFGLLLG-LVMSIEMAMVLTGKQF 115

Query: 119 --GELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              EL     +    +N + +G+++YT+Y Y  E++  ILL++++ AI L LR R + K 
Sbjct: 116 GANELPAPAARAADYSNTKELGRLIYTEYVYAFELAAVILLVAIVAAIALTLRQRGESKS 175

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
            D++KQ+    ++ I +V + S K
Sbjct: 176 MDVAKQVAVKREDRIRIVSMASEK 199


>gi|206560694|ref|YP_002231459.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia J2315]
 gi|198036736|emb|CAR52636.1| NADH dehydrogenase I chain J [Burkholderia cenocepacia J2315]
          Length = 216

 Score =  127 bits (319), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116

Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              +       +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KR
Sbjct: 117 THTVHAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
           Q +S Q++   ++ + +VK+++ K
Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEADK 200


>gi|107023179|ref|YP_621506.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia AU 1054]
 gi|116690261|ref|YP_835884.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia HI2424]
 gi|170733600|ref|YP_001765547.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia MC0-3]
 gi|105893368|gb|ABF76533.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia AU 1054]
 gi|116648350|gb|ABK08991.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia HI2424]
 gi|169816842|gb|ACA91425.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           cenocepacia MC0-3]
          Length = 216

 Score =  127 bits (319), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116

Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              +       +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KR
Sbjct: 117 THTVHAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
           Q +S Q++   ++ + +VK+++ K
Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEADK 200


>gi|253996964|ref|YP_003049028.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera
           mobilis JLW8]
 gi|253983643|gb|ACT48501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera
           mobilis JLW8]
          Length = 226

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 120/199 (60%), Gaps = 12/199 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + FY  + + +I+   V+T RNP+Y+   L+ AF  AAG++LLL AEF+A+  ++VYV
Sbjct: 9   QDIVFYTLATILLIAGLRVITTRNPVYAALYLVLAFFTAAGIWLLLEAEFLAIALVLVYV 68

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAE--LIVCASNFMVFS 116
           GAV+V FLF++MMLDI+++    + + GF  +  +     G++A E  ++V A NF V  
Sbjct: 69  GAVMVLFLFVVMMLDINLD----KLREGFWKALPVALPVGGLMAVEMVMVVGARNFGVDV 124

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      N  E +G+VLYT Y    E++  +LL++++ AI L LR RRD K  D 
Sbjct: 125 VAAPPAHPADYSNTAE-LGRVLYTDYLLSFELASVVLLVAIVAAIALTLRDRRDSKSMDP 183

Query: 177 SKQLESNPDNSIVMVKVKS 195
           +KQ+     + I +VK+++
Sbjct: 184 AKQVLVKKADRIRIVKMEA 202


>gi|53718856|ref|YP_107842.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei K96243]
 gi|53725806|ref|YP_103425.1| NADH dehydrogenase subunit J [Burkholderia mallei ATCC 23344]
 gi|67642183|ref|ZP_00440943.1| NADH dehydrogenase subunit J [Burkholderia mallei GB8 horse 4]
 gi|76809961|ref|YP_332853.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1710b]
 gi|121601517|ref|YP_992478.1| NADH dehydrogenase subunit J [Burkholderia mallei SAVP1]
 gi|124383891|ref|YP_001026719.1| NADH dehydrogenase subunit J [Burkholderia mallei NCTC 10229]
 gi|126440562|ref|YP_001058347.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 668]
 gi|126449514|ref|YP_001079996.1| NADH dehydrogenase subunit J [Burkholderia mallei NCTC 10247]
 gi|126453874|ref|YP_001065586.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106a]
 gi|167000359|ref|ZP_02266177.1| NADH dehydrogenase subunit J [Burkholderia mallei PRL-20]
 gi|167718854|ref|ZP_02402090.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei DM98]
 gi|167737862|ref|ZP_02410636.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 14]
 gi|167815045|ref|ZP_02446725.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 91]
 gi|167823461|ref|ZP_02454932.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 9]
 gi|167845013|ref|ZP_02470521.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei B7210]
 gi|167910236|ref|ZP_02497327.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 112]
 gi|226195411|ref|ZP_03791000.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei Pakistan 9]
 gi|242315732|ref|ZP_04814748.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106b]
 gi|254175409|ref|ZP_04882069.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 10399]
 gi|254190541|ref|ZP_04897048.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194999|ref|ZP_04901428.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           S13]
 gi|254202101|ref|ZP_04908464.1| NADH dehydrogenase I, J subunit [Burkholderia mallei FMH]
 gi|254207431|ref|ZP_04913781.1| NADH dehydrogenase I, J subunit [Burkholderia mallei JHU]
 gi|254258350|ref|ZP_04949404.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           1710a]
 gi|254298542|ref|ZP_04965994.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           406e]
 gi|254359853|ref|ZP_04976123.1| NADH dehydrogenase I, J subunit [Burkholderia mallei 2002721280]
 gi|52209270|emb|CAH35215.1| NADH dehydrogenase I chain J [Burkholderia pseudomallei K96243]
 gi|52429229|gb|AAU49822.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 23344]
 gi|76579414|gb|ABA48889.1| NADH dehydrogenase I chain J [Burkholderia pseudomallei 1710b]
 gi|121230327|gb|ABM52845.1| NADH dehydrogenase I, J subunit [Burkholderia mallei SAVP1]
 gi|124291911|gb|ABN01180.1| NADH dehydrogenase I, J subunit [Burkholderia mallei NCTC 10229]
 gi|126220055|gb|ABN83561.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           668]
 gi|126227516|gb|ABN91056.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 1106a]
 gi|126242384|gb|ABO05477.1| NADH dehydrogenase I, J subunit [Burkholderia mallei NCTC 10247]
 gi|147746348|gb|EDK53425.1| NADH dehydrogenase I, J subunit [Burkholderia mallei FMH]
 gi|147751325|gb|EDK58392.1| NADH dehydrogenase I, J subunit [Burkholderia mallei JHU]
 gi|148029093|gb|EDK86998.1| NADH dehydrogenase I, J subunit [Burkholderia mallei 2002721280]
 gi|157808368|gb|EDO85538.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           406e]
 gi|157938216|gb|EDO93886.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696453|gb|EDP86423.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 10399]
 gi|169651747|gb|EDS84440.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           S13]
 gi|225932613|gb|EEH28611.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei Pakistan 9]
 gi|238523279|gb|EEP86718.1| NADH dehydrogenase subunit J [Burkholderia mallei GB8 horse 4]
 gi|242138971|gb|EES25373.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106b]
 gi|243063693|gb|EES45879.1| NADH dehydrogenase subunit J [Burkholderia mallei PRL-20]
 gi|254217039|gb|EET06423.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           1710a]
          Length = 218

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 124/201 (61%), Gaps = 4/201 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLD++I+V     KR    +  +G   ++   LI+        S 
Sbjct: 61  VYVGAVMVLFLFVVMMLDVNIDVLRRDFKRFVPMATAVGAIIVVETALILWRGYGATASP 120

Query: 118 EGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             +++     G  N + IGKV+YT Y +  EI+G +LL+++I A+ L  +  +D KRQ +
Sbjct: 121 VRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSKRQRV 180

Query: 177 SKQLESNPDNSIVMVKVKSGK 197
           S+Q++   ++ + +VK+ + K
Sbjct: 181 SEQVKVRREDRVRLVKMPADK 201


>gi|78067037|ref|YP_369806.1| NADH dehydrogenase subunit J [Burkholderia sp. 383]
 gi|77967782|gb|ABB09162.1| NADH dehydrogenase subunit J [Burkholderia sp. 383]
          Length = 216

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116

Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              +       +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KR
Sbjct: 117 TQTVHAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
           Q +S Q++   ++ + +VK+++ K
Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEAEK 200


>gi|172061200|ref|YP_001808852.1| NADH dehydrogenase subunit J [Burkholderia ambifaria MC40-6]
 gi|171993717|gb|ACB64636.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           ambifaria MC40-6]
          Length = 216

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVVETALILWRGYGD 116

Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              +       +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KR
Sbjct: 117 THAVHAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
           Q +S Q++   ++ + +VK+++ K
Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEAEK 200


>gi|294083720|ref|YP_003550477.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663292|gb|ADE38393.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 201

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 126/198 (63%), Gaps = 10/198 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++LFFYLF+ + + S+F+VV  +NP+YSV  LI +F NAAGLF+L+GAEF+AM+ +VVYV
Sbjct: 3   EALFFYLFAGIMLASAFMVVISKNPVYSVLFLILSFFNAAGLFVLIGAEFLAMLLVVVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPR---KKRGFLGSFFIGILAAELIVCASNFMVFSAE-G 119
           GAV V FLF++MMLDI+   AE R   +K   LG    GIL  EL+          A   
Sbjct: 63  GAVAVLFLFVVMMLDINF--AEMRAGFQKYLPLGLIVGGILVFELVAAMYGDAFKGATLP 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           E S +     N   +G VLYT+Y Y  +++G ILL++MIGAI L +RHR  ++RQ ++ Q
Sbjct: 121 EASEI----PNTTRLGGVLYTKYIYLFQVAGLILLVAMIGAISLTMRHRPGVRRQVVANQ 176

Query: 180 LESNPDNSIVMVKVKSGK 197
                D ++ +V V  GK
Sbjct: 177 NMRRRDETVEVVSVPVGK 194


>gi|163793196|ref|ZP_02187172.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199]
 gi|159181842|gb|EDP66354.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199]
          Length = 204

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/209 (42%), Positives = 131/209 (62%), Gaps = 15/209 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+Q+L FYLF+ +A+ S  +V+T RNP++SV  LI AF NAAGLF+L+GAEF+AMI +V
Sbjct: 1   MVVQALVFYLFAAVAVASGAMVITSRNPVHSVLFLILAFFNAAGLFVLMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIG-------ILAAELIVCASNF 112
           VYVGAV V FLF++MMLDI+ +E+     ++GF+    +G       +    LI  A   
Sbjct: 61  VYVGAVAVLFLFVVMMLDINFVEL-----RQGFIRYVPVGAAIGLVLLAELLLITGAWTV 115

Query: 113 M--VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              + +A G +        N   +G +LYT+Y Y  + +G ILL++MIGAIVL LR R  
Sbjct: 116 APGIPNAMGAVIPPAADVTNTHALGGLLYTRYVYLFQAAGLILLIAMIGAIVLTLRSREG 175

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           ++RQ I  Q     ++++ ++KV  G G+
Sbjct: 176 VRRQSILVQNARRREDAVEVMKVTRGGGV 204


>gi|254251870|ref|ZP_04945188.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia
           dolosa AUO158]
 gi|124894479|gb|EAY68359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia
           dolosa AUO158]
          Length = 216

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 127/204 (62%), Gaps = 11/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116

Query: 121 ------LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++    +G +N   IGKV+YT Y +  EI+G +LL+++I AI L  +  +D KR
Sbjct: 117 THTVHAMTSAATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTAQKGKDSKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
           Q +S+Q++   ++ + +VK+++ K
Sbjct: 177 QRVSEQVKVRRNDRVRLVKMEADK 200


>gi|134283969|ref|ZP_01770665.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 305]
 gi|167893554|ref|ZP_02480956.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 7894]
 gi|167902000|ref|ZP_02489205.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei NCTC 13177]
 gi|167918269|ref|ZP_02505360.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei BCC215]
 gi|217420305|ref|ZP_03451811.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 576]
 gi|237811591|ref|YP_002896042.1| NADH dehydrogenase subunit j [Burkholderia pseudomallei MSHR346]
 gi|254181178|ref|ZP_04887775.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           1655]
 gi|134244758|gb|EBA44856.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 305]
 gi|184211716|gb|EDU08759.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           1655]
 gi|217397609|gb|EEC37625.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 576]
 gi|237502691|gb|ACQ95009.1| NADH dehydrogenase subunit j [Burkholderia pseudomallei MSHR346]
          Length = 218

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 124/201 (61%), Gaps = 4/201 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLD++I+V     KR    +  +G   ++   LI+        S 
Sbjct: 61  VYVGAVMVLFLFVVMMLDVNIDVLRRDFKRFVPMATAVGAIIVVETALILWRGYGATASP 120

Query: 118 EGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             +++     G  N + IGKV+YT Y +  EI+G +LL+++I A+ L  +  +D KRQ +
Sbjct: 121 VRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSKRQRV 180

Query: 177 SKQLESNPDNSIVMVKVKSGK 197
           S+Q++   ++ + +VK+ + K
Sbjct: 181 SEQVKVRREDRVRLVKMPAEK 201


>gi|221199665|ref|ZP_03572709.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2M]
 gi|221205435|ref|ZP_03578450.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2]
 gi|221174273|gb|EEE06705.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2]
 gi|221180950|gb|EEE13353.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2M]
          Length = 216

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 122/204 (59%), Gaps = 11/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDFL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116

Query: 121 -------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                   S      +N   IGKV+YT Y +  EI+G +LL+++I AI L     +D KR
Sbjct: 117 THAVHAMTSGATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTSHKGKDSKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
           Q +S Q++   D+ + +VK+++ K
Sbjct: 177 QRVSDQVKVRRDDRVRLVKMEADK 200


>gi|254247666|ref|ZP_04940987.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Burkholderia
           cenocepacia PC184]
 gi|124872442|gb|EAY64158.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Burkholderia
           cenocepacia PC184]
          Length = 216

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVPFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116

Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              +       +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KR
Sbjct: 117 THTVHAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
           Q +S Q++   ++ + +VK+++ K
Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEADK 200


>gi|238028134|ref|YP_002912365.1| NADH dehydrogenase subunit J [Burkholderia glumae BGR1]
 gi|237877328|gb|ACR29661.1| Hypothetical protein bglu_1g25850 [Burkholderia glumae BGR1]
          Length = 220

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 125/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + +IS+  V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVISALKVITARNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     +R F     +  +   +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVDVL----RRDFRRFVPMATVVGAIIVVETALILWRGYGA 116

Query: 121 LS---RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +   R V  G     +N   IGKV+YT Y +  EI+G +LL+++I A+ L     +  K
Sbjct: 117 TASPVRDVASGALANMSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAVSLTAGKGKYRK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ++S+Q+    ++ + +VK+ + K
Sbjct: 177 RQNVSEQIRVRREDRVRLVKMAAEK 201


>gi|171463535|ref|YP_001797648.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193073|gb|ACB44034.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 215

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 124/193 (64%), Gaps = 2/193 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++FFY F+ + IIS+  V+T RNP+++   L+ AF  A+GL++LL AEF+++  ++VYVG
Sbjct: 10  AVFFYGFAGLLIISALRVITARNPVHAALFLVLAFFCASGLWMLLKAEFLSLALILVYVG 69

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL-IVCASNFMVFSAEGELS 122
           AV+V FLF++MMLD+D+E      K+    +F +G ++  EL IV   +F+  +A  +  
Sbjct: 70  AVMVLFLFVVMMLDLDLEHLRRDFKKFLPVAFLMGAVIVLELSIVIIRSFIGTNAPVQPM 129

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                 NN + +G +++  YAY  E++G ILL+++I A+ L LR+R+D K Q+I +Q+  
Sbjct: 130 PEEVMANNTQALGMLIFVDYAYAFEVAGVILLVAIIAAVALTLRNRKDSKSQNIHEQVNV 189

Query: 183 NPDNSIVMVKVKS 195
                + +VK+ S
Sbjct: 190 VAAERMRIVKMGS 202


>gi|304321907|ref|YP_003855550.1| NADH dehydrogenase subunit J [Parvularcula bermudensis HTCC2503]
 gi|303300809|gb|ADM10408.1| NADH dehydrogenase subunit J [Parvularcula bermudensis HTCC2503]
          Length = 200

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 122/197 (61%), Gaps = 9/197 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F +F+   ++    V+  RNP++SV  LI AF++ AGLF+L+GAE++A + +VVYVGAV 
Sbjct: 8   FSIFATAVVVWGLGVIFARNPVHSVMCLIMAFISTAGLFVLIGAEYLAFLLVVVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF- 126
           V FLF++MMLDID   AE R   G+      G++ A  +V     MV S  G  +     
Sbjct: 68  VLFLFVVMMLDIDF--AELRA--GYARYLPFGVVVAAALVIEIGVMVTSWSGAPAAQAPV 123

Query: 127 ----KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                 NN E +G VLYT+Y +  +I+G +LL++MIGAI+L  R R+ IK QD+S+Q+  
Sbjct: 124 AASDGPNNAEQLGMVLYTEYVHFFQIAGLVLLVAMIGAILLTFRQRQGIKTQDVSRQVGR 183

Query: 183 NPDNSIVMVKVKSGKGI 199
             ++ + +V V +GKGI
Sbjct: 184 RREDGVEVVSVPTGKGI 200


>gi|145589225|ref|YP_001155822.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047631|gb|ABP34258.1| NADH dehydrogenase subunit J [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 215

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 122/193 (63%), Gaps = 2/193 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++FFY F+ + +IS+  V+T RNP+++   L+ AF  A+GL++LL AEF+++  ++VYVG
Sbjct: 10  AVFFYGFAGLLVISALRVITARNPVHAALFLVLAFFCASGLWMLLKAEFLSLALILVYVG 69

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL-IVCASNFMVFSAEGELS 122
           AV+V FLF++MMLD+DIE      K+    +F +G ++  EL IV   +F+      +  
Sbjct: 70  AVMVLFLFVVMMLDLDIEHLRRDFKKFLPVAFLMGTVIVLELSIVIIRSFIGTDTPVQPM 129

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                 NN + +G +++  Y Y  EI+G ILL+++I A+ L LR+R+D K Q+I +Q+  
Sbjct: 130 PEEMMANNTQALGMLIFVDYVYAFEIAGVILLVAIIAAVALTLRNRKDSKSQNIHEQVNV 189

Query: 183 NPDNSIVMVKVKS 195
              + + +VK+ S
Sbjct: 190 VAADRMRIVKMDS 202


>gi|319794659|ref|YP_004156299.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax
           paradoxus EPS]
 gi|315597122|gb|ADU38188.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax
           paradoxus EPS]
          Length = 221

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 119/198 (60%), Gaps = 10/198 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++  FYLF+ + + ++F V+T RNP+Y+   L+ AF  A+ ++LLL AEF+A+  ++
Sbjct: 1   MDVKTGLFYLFAAVLLFAAFRVITARNPVYAALYLVLAFFQASAIWLLLRAEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI------VCASNFMV 114
           VYVGAV+V FLF++MMLDI+++      ++GF   F +      LI      V    F +
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVD----SLRQGFWKHFPLAAGVGALIALEMAAVLMGGFRL 116

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             A   ++      +N   +GK+LY++Y YPLEI+  ILL+++I AI L LR R+D K  
Sbjct: 117 GEAPRAMAVTSPNTSNTMELGKLLYSEYLYPLEIAAVILLVAIIAAIALTLRTRKDSKYT 176

Query: 175 DISKQLESNPDNSIVMVK 192
           + S Q+     + + +V+
Sbjct: 177 NPSDQVRVKARDRVRIVQ 194


>gi|288942125|ref|YP_003444365.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Allochromatium vinosum DSM 180]
 gi|288897497|gb|ADC63333.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Allochromatium vinosum DSM 180]
          Length = 212

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 117/192 (60%), Gaps = 14/192 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + L FY+F+ + + ++ +V+T +NP++SV  L+ AFV++A L++LL AEF+ ++ ++VYV
Sbjct: 3   EKLIFYVFALITVWAAVMVITRKNPVHSVLFLVLAFVSSAALWVLLEAEFLGIVLILVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAE--LIVCASNFMVFS 116
           GAV+V FLF++MMLDID+       + GF     L      I+A E  LIV   NF    
Sbjct: 63  GAVMVLFLFVVMMLDIDLATI----RAGFVQNLPLAGLIAAIMAVEILLIVGPGNFG-LD 117

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           A  +   L  + +N   +G +LY+ Y YP+EI+  ILLL+++ AI L LR R D K  D 
Sbjct: 118 AFPKPEPLGAEVSNTRELGLLLYSVYIYPVEIAAVILLLAIVAAIRLTLRRRPDNKYVDP 177

Query: 177 SKQ--LESNPDN 186
           ++Q  +   PD 
Sbjct: 178 ARQVRVRKGPDR 189


>gi|153871401|ref|ZP_02000582.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Beggiatoa
           sp. PS]
 gi|152072135|gb|EDN69420.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Beggiatoa
           sp. PS]
          Length = 195

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 114/194 (58%), Gaps = 14/194 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+ + I ++  V+TV+NP+++   L+ AF ++A ++LLL AEF+A+  ++VYVGAV+
Sbjct: 6   FYLFALILIFAASRVITVKNPVHAALFLVLAFFSSAAIWLLLQAEFLAIALILVYVGAVM 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG------ILAAELIVCASNFMVFSAEGEL 121
           V FLF++MMLDI+      + + GF+    I       IL   ++V  +   V   E   
Sbjct: 66  VLFLFVVMMLDINFT----QLREGFVRHLPIAGIVGALILLEMVLVVGTWHQVPIPEIAA 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             L     N E +G+VLYT+Y YP EI+  ILL++MI AI L LR RR  K Q   +Q+ 
Sbjct: 122 DAL----PNTEALGQVLYTEYVYPFEIAAVILLVAMIAAIALTLRPRRQTKTQKPEQQVN 177

Query: 182 SNPDNSIVMVKVKS 195
                 + +VK+ +
Sbjct: 178 VRRSERVRLVKMPA 191


>gi|161524213|ref|YP_001579225.1| NADH dehydrogenase subunit J [Burkholderia multivorans ATCC 17616]
 gi|189351030|ref|YP_001946658.1| NADH dehydrogenase subunit J [Burkholderia multivorans ATCC 17616]
 gi|221211744|ref|ZP_03584723.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD1]
 gi|160341642|gb|ABX14728.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           multivorans ATCC 17616]
 gi|189335052|dbj|BAG44122.1| NADH dehydrogenase I chain J [Burkholderia multivorans ATCC 17616]
 gi|221169105|gb|EEE01573.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD1]
          Length = 216

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G   ++   LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDFLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHAV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               S      +N   IGKV+YT Y +  EI+G +LL+++I AI L     +D KRQ +S
Sbjct: 121 HAMTSGATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTSHKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   ++ + +VK+++ K
Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200


>gi|68171482|ref|ZP_00544866.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658094|ref|YP_507364.1| NADH dehydrogenase I, J subunit [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999088|gb|EAM85755.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599551|gb|ABD45020.1| NADH dehydrogenase I, J subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 200

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 118/192 (61%), Gaps = 7/192 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+ F+ + ++SS  VV V NP+YSV  LI  F  ++ LF+LLGAE +AM+ ++VYVGAV 
Sbjct: 6   FHFFAVLIVLSSISVVYVSNPVYSVLFLILTFFISSTLFILLGAELIAMLVIIVYVGAVA 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-FSAEGEL-SRLV 125
           V FLF++MMLDI+      R K GF     IG+L   ++     F++  SA  EL +  V
Sbjct: 66  VLFLFVVMMLDIN----YSRLKSGFTKYLAIGLLCGMILFVNIVFVIKQSATTELVTGSV 121

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQLESNP 184
              +NV  IG ++YT+Y Y   +SG +LL+S+IG++VL LR +  ++ RQ +  Q+  + 
Sbjct: 122 SYVSNVIAIGNLIYTKYMYVFHLSGILLLISIIGSLVLTLRTKNGNVYRQSVGAQVNRSS 181

Query: 185 DNSIVMVKVKSG 196
               V VKV+ G
Sbjct: 182 TVKYVNVKVRQG 193


>gi|261856541|ref|YP_003263824.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Halothiobacillus neapolitanus c2]
 gi|261837010|gb|ACX96777.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Halothiobacillus neapolitanus c2]
          Length = 219

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 123/205 (60%), Gaps = 10/205 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    FY+F+  A+IS+  VVTV+NP+++   L+  F   +  ++L+ AEF+ ++ L+
Sbjct: 1   MTLYQFLFYVFASSAVISAIRVVTVKNPVHAALFLVLTFFTTSLTWILMEAEFLGIVLLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI++    P ++ GF+ +  +G+  A ++V     +V S    
Sbjct: 61  VYVGAVMVLFLFVVMMLDINL---APLRE-GFVRNLPVGVFVALVMVIELGLIVGSHAFG 116

Query: 121 LSRLVFK------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           L+            +N   +G VLYT+Y YP EI+ FILL++++ AI L  R R  +  Q
Sbjct: 117 LANYPAPTAAAAGTSNTLALGSVLYTEYVYPFEIAAFILLVAIVAAISLAHRKREGVLYQ 176

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           +I +Q++ N D+ + MVK+ S   +
Sbjct: 177 NIDQQVKVNRDDRVRMVKMVSSTPV 201


>gi|170748468|ref|YP_001754728.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654990|gb|ACB24045.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium radiotolerans JCM 2831]
          Length = 206

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 122/195 (62%), Gaps = 13/195 (6%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + + S F+V+  RNP+ SV  LI AFVNAAGLF+L+GAEF+AMI +VVYVGAV V FLF+
Sbjct: 14  ITVASGFMVIASRNPVASVLFLILAFVNAAGLFVLMGAEFLAMILVVVYVGAVAVLFLFV 73

Query: 74  IMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA--EGELSRLVF 126
           +MMLD+D   AE R+  GF     +G+    I   EL++   ++ +     +  L  +  
Sbjct: 74  VMMLDVDF--AELRQ--GFQQYLPIGALIGAIFLVELLLVVGSWSIDPGLVQAPLGNVAA 129

Query: 127 KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N  N + +G+V+YT YAY  +++G ILL++MIGAIVL LR R  +KRQ I+ Q     
Sbjct: 130 AENLTNAQALGRVIYTDYAYFFQLAGLILLVAMIGAIVLTLRDRPGVKRQSIAVQNARTQ 189

Query: 185 DNSIVMVKVKSGKGI 199
             ++   KV S +G+
Sbjct: 190 AMAVETRKVPSRQGV 204


>gi|171058194|ref|YP_001790543.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leptothrix
           cholodnii SP-6]
 gi|170775639|gb|ACB33778.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leptothrix
           cholodnii SP-6]
          Length = 216

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 124/205 (60%), Gaps = 25/205 (12%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +  FY+FS + + ++F V+T R+P+++   L+ AF  A+ +++LL AEF+A+  ++
Sbjct: 1   MDTTTALFYVFSAVLLFAAFRVITARSPVHAALYLVLAFFTASCVWMLLQAEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVC------- 108
           VYVGAV+V FLF++MMLDI+++V     ++GF   F +      I+A E+ V        
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVDVL----RQGFWSHFPVAATVGVIIALEMAVVLLRGFNL 116

Query: 109 -ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +  M  +AEG          N + +G  LYT Y YPLEI+  ILL+++I AI L LR 
Sbjct: 117 PIAKAMPGAAEGV--------PNTKLLGIELYTDYLYPLEIAAVILLVAIIAAIALTLRR 168

Query: 168 RRDIKRQDISKQLESNPDNSIVMVK 192
           R+D+K Q+ ++Q+++   + + +VK
Sbjct: 169 RKDVKGQNPAEQVKAKKADRLRIVK 193


>gi|187477550|ref|YP_785574.1| NADH dehydrogenase I subunit J [Bordetella avium 197N]
 gi|115422136|emb|CAJ48660.1| NADH dehydrogenase I chain J [Bordetella avium 197N]
          Length = 210

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 124/198 (62%), Gaps = 7/198 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   S+ FYL +F+ ++++F V+T R+P+ +V  LI AF NAA L++LLGAEF+A++ ++
Sbjct: 1   MTFTSVLFYLLAFVLVVAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI I+      + G      +G++   ++V    F++F+  G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRID----HLRHGLKTYLPLGLIIGGIMVVEMGFVLFTTWGD 116

Query: 121 LS-RLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
              ++V  G  NN   +G+ +YTQY + +E+   +LL+ M+ AI L LR RRD K  D +
Sbjct: 117 AGPQVVMAGDYNNARALGEAMYTQYVFGVEVGAALLLVGMVAAIALTLRRRRDAKYNDPA 176

Query: 178 KQLESNPDNSIVMVKVKS 195
             +     +   MVK+++
Sbjct: 177 AAVRVRAKDRFRMVKMQA 194


>gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana)
            tropicalis]
          Length = 1458

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 104/173 (60%), Gaps = 16/173 (9%)

Query: 1    MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
            M  ++ FFYLFS + + ++F V+  RNP+++V SLI AF  AAG++LLL AEF+ +  ++
Sbjct: 1277 MDAKTGFFYLFSVVLLFAAFRVIMARNPVHAVLSLILAFSQAAGIWLLLKAEFLGITLVL 1336

Query: 61   VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI------VCASNFMV 114
            VY+GAV+V FLF++MMLDI I+      ++GF   F +  L   +I      V    F  
Sbjct: 1337 VYLGAVMVLFLFVVMMLDIRIDSV----RQGFWKHFPLAALVGAIITFEMALVLMDGFRS 1392

Query: 115  FSAEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                  +S +V         +N   +GK+LYTQY YP+EI+  ILL++MI AI
Sbjct: 1393 IDEPKAISAVVDAAGQAVPYSNTRVLGKLLYTQYLYPVEIAAVILLVAMIAAI 1445


>gi|186476755|ref|YP_001858225.1| NADH dehydrogenase subunit J [Burkholderia phymatum STM815]
 gi|184193214|gb|ACC71179.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           phymatum STM815]
          Length = 222

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 112/189 (59%), Gaps = 14/189 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ +  +S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFALLLTVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDVLRRDFKRFVPMATVVG----AIIVIETALILWHGYGA 116

Query: 121 LSRLV----------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             + V             +N   IGK++YT Y +  E++G +LL+++I AI L  RH +D
Sbjct: 117 TVQPVRDTTAAVAGAADWSNTRLIGKIIYTDYIFAFEVAGLVLLVAIIAAIALTTRHGKD 176

Query: 171 IKRQDISKQ 179
            KRQ +S Q
Sbjct: 177 SKRQRVSDQ 185


>gi|330817783|ref|YP_004361488.1| hypothetical protein bgla_1g29200 [Burkholderia gladioli BSR3]
 gi|327370176|gb|AEA61532.1| hypothetical protein bgla_1g29200 [Burkholderia gladioli BSR3]
          Length = 220

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 118/200 (59%), Gaps = 12/200 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + +IS   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVISGLKVITARNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+ +V     +R F     +  +   +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINTDVL----RRDFRRFVPMATVVGAIIVVETALILWRGYGA 116

Query: 121 LS---RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            S   R +  G      N + IGKV+YT Y +  EI+G +LL+++I A+ L     ++ K
Sbjct: 117 TSSPVREIASGALANMTNTQLIGKVIYTDYIFAFEIAGLVLLVAIIAAVSLTSGRGKERK 176

Query: 173 RQDISKQLESNPDNSIVMVK 192
           RQ +S Q+     + + +VK
Sbjct: 177 RQRVSDQVSVRRQDRVRLVK 196


>gi|73667097|ref|YP_303113.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia
           canis str. Jake]
 gi|72394238|gb|AAZ68515.1| NADH dehydrogenase subunit J [Ehrlichia canis str. Jake]
          Length = 200

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 7/197 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F+ F+ + ++SS  VV + NP+YSV  LI  F  ++ LF+LLGAE +AM+ ++VY
Sbjct: 1   MVYFLFHFFAALIVLSSVAVVYISNPVYSVLFLILTFFISSTLFILLGAELIAMLVIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-SAEGEL 121
           VGAV V FLF++MMLDI+      R K  F     IG+L   ++     F++  SA  EL
Sbjct: 61  VGAVAVLFLFVVMMLDIN----YSRFKNVFTKYLAIGLLCGVILFVNIVFIIRQSATTEL 116

Query: 122 -SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQ 179
            +  V   +NV  IG ++YT+Y Y   +SG +LL+S+IGA+VL LR +   + RQ+I+ Q
Sbjct: 117 VTESVQYVSNVVAIGNLIYTEYMYIFHLSGILLLISIIGALVLTLRAKNSSVHRQNINMQ 176

Query: 180 LESNPDNSIVMVKVKSG 196
           +        V VKVK G
Sbjct: 177 INRPSSIKYVSVKVKEG 193


>gi|144900795|emb|CAM77659.1| NADH-quinone oxidoreductase chain 10 [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 203

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 126/201 (62%), Gaps = 7/201 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY+F+ +A+ S  +V++ RNP++SV  LI  F NAAGLFLLLGAEF+AM+ +VVYVG
Sbjct: 4   ALIFYMFAGLAVASGVMVISARNPVHSVLFLILCFFNAAGLFLLLGAEFLAMVLVVVYVG 63

Query: 65  AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122
           AV V FLF++MMLDI+ + + E   +    G+    +L  EL V    +  F+ + E   
Sbjct: 64  AVAVMFLFVVMMLDINFLRLREGVAQYLPTGAVIGLVLLVELAVMFGGW-AFAPDVEALL 122

Query: 123 ----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                 V +  N E +G+++YT+Y Y  + SG +LL++M+GAI+L  R R  +++Q I  
Sbjct: 123 AAPIPAVSEMTNTEALGRLIYTKYVYLFQASGVVLLVAMVGAILLTHRSRTGVRKQKIYD 182

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+     NS+ + KV +G GI
Sbjct: 183 QVGRTAANSVEIRKVSTGGGI 203


>gi|114797370|ref|YP_760458.1| NADH-quinone oxidoreductase subunit J [Hyphomonas neptunium ATCC
           15444]
 gi|114737544|gb|ABI75669.1| NADH-quinone oxidoreductase, J subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 197

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 123/199 (61%), Gaps = 4/199 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L + + ++++  V+  RNP++SV  LI  F +AAGL +L+GAEF+AM+ +VVY
Sbjct: 1   MALIAFSLIAAIVVLAAMFVIAARNPVHSVLWLILTFFSAAGLLVLIGAEFLAMLLVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL-IVCASNFMVFSAEGE 120
           VGAV V FLF++MMLD+D    +    R +  +  +G IL AEL +V  +   +   EG 
Sbjct: 61  VGAVAVLFLFVVMMLDVDFVELKQGTLRYWPFALLVGVILLAELALVSVAGDAI--PEGN 118

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           ++       N E IG V+YT Y    ++SG +LL++M+GAIVL LRHR  IKRQDI+KQ 
Sbjct: 119 MNASPNAPTNAEAIGYVMYTDYLLLFQLSGIVLLIAMVGAIVLTLRHRPHIKRQDIAKQT 178

Query: 181 ESNPDNSIVMVKVKSGKGI 199
                +++ +     G+GI
Sbjct: 179 GRRRVDAVDLKDPTPGQGI 197


>gi|239816474|ref|YP_002945384.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax
           paradoxus S110]
 gi|239803051|gb|ACS20118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax
           paradoxus S110]
          Length = 218

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 119/197 (60%), Gaps = 9/197 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++  FYLF+ + + ++F V+T RNP+Y+   L+ AF  A+ ++LLL AEF+A+  ++
Sbjct: 1   MDVKTGLFYLFAAVLLFAAFRVITARNPVYAALYLVLAFFQASAIWLLLRAEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MMLDI+++      ++GF   F +      ++A E+          
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVD----GLRQGFWKHFPLAAGVGALIALEMAAVLMGGFRL 116

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            A    +     G+N   +GK+LY++Y YPLEI+  ILL++++ AI L LR R+D K  +
Sbjct: 117 EAPRAGAAAAAHGSNTLELGKLLYSEYLYPLEIAAVILLVAIVAAIALTLRTRKDSKYVN 176

Query: 176 ISKQLESNPDNSIVMVK 192
            S Q+     + + +V+
Sbjct: 177 PSDQVRVKARDRVRIVQ 193


>gi|300311104|ref|YP_003775196.1| transmembrane NADH dehydrogenase I subunit J [Herbaspirillum
           seropedicae SmR1]
 gi|300073889|gb|ADJ63288.1| transmembrane NADH dehydrogenase I (Chain J) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 125/199 (62%), Gaps = 8/199 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++ FY+F+ + +I++  V+T RNP+++   L+ +F +AAG+++LL AEF+A++ ++
Sbjct: 1   MEFKTVLFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV----FS 116
           VYVGAV+V FLF++MMLDI+++    + + GF G F +      +IV     ++    ++
Sbjct: 61  VYVGAVMVLFLFVVMMLDINMD----KLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWT 116

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            E ++          + +GK+++T+Y Y  EI+  ILL++++ A+ L LR R+D K  D 
Sbjct: 117 PETQVPAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDP 176

Query: 177 SKQLESNPDNSIVMVKVKS 195
           +K ++    + + +V +K+
Sbjct: 177 AKAVKVKASDRVRLVSMKA 195


>gi|296136697|ref|YP_003643939.1| hypothetical protein Tint_2259 [Thiomonas intermedia K12]
 gi|295796819|gb|ADG31609.1| hypothetical protein Tint_2259 [Thiomonas intermedia K12]
          Length = 219

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 125/209 (59%), Gaps = 18/209 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYLFS + + ++  V+T RNP++S   L+ AF   + ++LLL AEF+A++ ++
Sbjct: 11  MDVQTILFYLFSAVLLFAALRVITARNPVHSALYLVLAFFQMSAIWLLLRAEFLAIVLVL 70

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI+++      ++GF   F +  L   LIV   A+  M     
Sbjct: 71  VYVGAVMVLFLFVVMMLDINLD----SIRKGFWRYFPVAALVGVLIVLEMAAVLMQGFQI 126

Query: 119 GELSRLVFKG------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           G ++R    G            +N   +G VLY+QY + +EI+  ILL+++I AI L LR
Sbjct: 127 GGMTRAAQVGAAASADNPLTHLSNTRALGVVLYSQYLFAVEIAAVILLVAIIAAIALTLR 186

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKS 195
            R+D++    S+Q+++   + + +V + +
Sbjct: 187 RRKDVRHMPASEQIKARRADRVRLVSMPA 215


>gi|294340852|emb|CAZ89247.1| putative NADH-quinone oxidoreductase chain J (NADH dehydrogenase I,
           chain J) (NDH-1, chain J) (NuoJ) [Thiomonas sp. 3As]
          Length = 209

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 125/209 (59%), Gaps = 18/209 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYLFS + + ++  V+T RNP++S   L+ AF   + ++LLL AEF+A++ ++
Sbjct: 1   MDVQTILFYLFSAVLLFAALRVITARNPVHSALYLVLAFFQMSAIWLLLRAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI+++      ++GF   F +  L   LIV   A+  M     
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLD----SIRKGFWRYFPVAALVGVLIVLEMAAVLMQGFQI 116

Query: 119 GELSRLVFKG------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           G ++R    G            +N   +G VLY+QY + +EI+  ILL+++I AI L LR
Sbjct: 117 GGMTRAAQVGAAASADNPLTHLSNTRALGVVLYSQYLFAVEIAAVILLVAIIAAIALTLR 176

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKS 195
            R+D++    S+Q+++   + + +V + +
Sbjct: 177 RRKDVRHMPASEQIKARRADRVRLVSMPA 205


>gi|34496405|ref|NP_900620.1| NADH-ubiquinone oxidoreductase, chain J [Chromobacterium violaceum
           ATCC 12472]
 gi|34102258|gb|AAQ58624.1| NADH-ubiquinone oxidoreductase, chain J [Chromobacterium violaceum
           ATCC 12472]
          Length = 214

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 122/205 (59%), Gaps = 10/205 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY+ S + + +   VVT +NP+++   L+ AF  +AG +LL+ +EF+A+  ++
Sbjct: 1   MNLTTVIFYVLSAILVFAGLRVVTAKNPVHAALYLVLAFFTSAGHWLLMESEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+IE    + + GF  +  +      ++V     ++ S +  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIE----KLREGFWKNLPVAATVGAIMVFEMALILVSPQAS 116

Query: 121 LSR------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           LS+      L    +NV+ +G  LYT Y  P EI+  +LLL+MI AI L +R R+D K  
Sbjct: 117 LSQYKAAAPLAADFSNVKMLGSQLYTTYLLPFEIAAVVLLLAMIAAIGLTMRTRKDSKVI 176

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           D + Q++   ++ + +VK+ + K +
Sbjct: 177 DPAVQVKVRREDRVRIVKMDAVKKV 201


>gi|9653241|ref|NP_062487.1| NADH dehydrogenase subunit 6 [Chondrus crispus]
 gi|1352589|sp|P48924|NU6M_CHOCR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1334488|emb|CAA87610.1| NADH dehydrogenase (ubiquinone), subunit 6 [Chondrus crispus]
          Length = 204

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 111/196 (56%), Gaps = 23/196 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS  A+ISS +V+ + N ++SV  LI  F N AGL LLLG EF + + ++VYVGA+ 
Sbjct: 8   FYLFSIFALISSLMVIGLTNAVHSVLFLILVFCNVAGLLLLLGPEFFSFMLIIVYVGAIA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V FLF++MML+I ++         F   + IGIL    ++  S F  FS+  EL  + F+
Sbjct: 68  VLFLFVVMMLNIKLK----STNISFSSLWPIGILT--FVILLSQF--FSSFYELDLVKFQ 119

Query: 128 G---------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           G                N++ IGKVLYT +     I G ILL++MIG IVL +  R D+K
Sbjct: 120 GKELFFISWANENSNLTNIKVIGKVLYTHFNLLFLICGLILLVAMIGVIVLTMHQRVDVK 179

Query: 173 RQDISKQLESNPDNSI 188
           +Q I+ QL     N I
Sbjct: 180 KQQIALQLARTAPNVI 195


>gi|220934171|ref|YP_002513070.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995481|gb|ACL72083.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 197

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 117/195 (60%), Gaps = 8/195 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  FY FS + + ++  ++TVRNP+++   L+  F  +A L+++L AEF+ ++ ++VYV
Sbjct: 4   EAFLFYFFSVILVGAAVAMITVRNPVHAALFLVLTFFTSAALWIMLEAEFLGIVLVLVYV 63

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSAEGE 120
           GAV+V FLF++MMLDI++     R + GF+    +GI+ A  +V     ++   F  E  
Sbjct: 64  GAVMVLFLFVVMMLDINLA----RMREGFIRFLPVGIVVAVAMVSVMTLVIVRHFHMEAP 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
             R     NN E +G++LYT+Y YP EI+  ILL++++ AI L +R R   K  D ++Q+
Sbjct: 120 -ERAGADYNNTEALGQILYTEYVYPFEIAAVILLVAIVAAIALTMRRRPGTKAIDPAQQV 178

Query: 181 ESNPDNSIVMVKVKS 195
                  + MV +KS
Sbjct: 179 RITRKGRVRMVDMKS 193


>gi|297538947|ref|YP_003674716.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera
           sp. 301]
 gi|297258294|gb|ADI30139.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera
           sp. 301]
          Length = 217

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 121/201 (60%), Gaps = 16/201 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + FY  + + + ++  V+T RNP+Y+   L+ AF  AAG++LLL AEF+A+  ++VYV
Sbjct: 9   QDIVFYTLAAVLLYAAISVITTRNPVYAALYLVLAFFTAAGIWLLLEAEFLAIALVLVYV 68

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAE--LIVCASNFMVFS 116
           GAV+V FLF++MMLDI+++    + + GF  +  +     G++A E  +IV   N   F 
Sbjct: 69  GAVMVLFLFVVMMLDINLD----KLREGFWNALPVALPVGGLMAVEMVMIVGVRN---FG 121

Query: 117 AEGELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           A+  ++      +  N   +G+VLYT Y  P E++  +LL++++ AI L LR R++ K  
Sbjct: 122 ADKVIAPPAHAADYSNTAELGRVLYTDYLLPFELASVVLLVAIVAAIALTLRDRKESKSV 181

Query: 175 DISKQLESNPDNSIVMVKVKS 195
           D SKQ+     + I ++K+ +
Sbjct: 182 DPSKQVLVKKADRIRILKMDA 202


>gi|49475649|ref|YP_033690.1| NADH dehydrogenase subunit J [Bartonella henselae str. Houston-1]
 gi|49238456|emb|CAF27684.1| NADH dehydrogenase I, J subunit [Bartonella henselae str.
           Houston-1]
          Length = 206

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 122/191 (63%), Gaps = 13/191 (6%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S+ +V+T RNP++SV  LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF++MML
Sbjct: 20  SAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFVVMML 79

Query: 78  DID-IEVAEPRKKRGFLGSFFIGILAAELIV--CASNF------MVFSAEGELSRLVFKG 128
           D+D  E+     +   +G+    I+A ELIV    S F       V     +L+    + 
Sbjct: 80  DVDFAELKSGTLRYAPIGALVGSIVAVELIVVFVGSRFSPVLRAHVMQPMPDLA----QK 135

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188
            N + +G +LYT Y +  +I+G ILL++MIGAI+L LRH+  +KRQ I+ Q+    +N+I
Sbjct: 136 TNTQALGDILYTDYVFYFQIAGIILLVAMIGAIILTLRHKSGVKRQSIAVQVSRKVENAI 195

Query: 189 VMVKVKSGKGI 199
            + +++SGKGI
Sbjct: 196 EIKQIESGKGI 206


>gi|217970165|ref|YP_002355399.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thauera sp.
           MZ1T]
 gi|217507492|gb|ACK54503.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thauera sp.
           MZ1T]
          Length = 201

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 118/203 (58%), Gaps = 10/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY  + + ++++  V+T RNP+++   L+  F NA GL+LLL AEF+A+  ++
Sbjct: 1   MEFKTFVFYFLAAIMVLAALRVITARNPVHAALFLVLTFFNAGGLWLLLQAEFLAVTLVM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL------IVCASNFMV 114
           VYVGAV+V FLF++MMLDI+++    R + GF     +G L   L      +V   ++  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLD----RLREGFWSYLPVGALVGILMLVEMVMVLGGSYFG 116

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             A    + +    +N   +G+VLYT Y Y  E++  +LL++M+ A+ L LR R+ +K  
Sbjct: 117 LEAMPAPAPVAADYSNTRELGRVLYTDYVYAFELASLVLLVAMVSAVALTLRKRKGLKSI 176

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
             S+Q+    +  + +VK++S K
Sbjct: 177 PPSEQVAVRREGRVELVKMQSEK 199


>gi|38638285|ref|NP_943690.1| NADH dehydrogenase subunit 6 [Chara vulgaris]
 gi|32966599|gb|AAP92182.1| NADH dehydrogenase subunit 6 [Chara vulgaris]
          Length = 200

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 108/185 (58%), Gaps = 11/185 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F +FS +A++S  +V+  RNP++SV  LI  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFSIFSSIALVSGVMVIRARNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MML+I I E+ E   +   +G     I   E+ +   N  +     ELS  
Sbjct: 62  IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGLIFLLEIFLVVDNDYIPILPTELSTT 121

Query: 125 VFK----------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           VF+            N+E +G +LYT Y Y   +S  ILL++MIGAIVL +     +KRQ
Sbjct: 122 VFQYTVYASKIQSWTNLETLGNLLYTTYFYLFLVSSLILLVAMIGAIVLTMHKTTQVKRQ 181

Query: 175 DISKQ 179
           D+ +Q
Sbjct: 182 DVFQQ 186


>gi|186920131|ref|YP_001874785.1| NADH dehydrogenase subunit 6 [Hemiselmis andersenii]
 gi|186461077|gb|ACC78239.1| NADH dehydrogenase subunit 6 [Hemiselmis andersenii]
          Length = 208

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 23/207 (11%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+++ F  FS + +     V+T +NPI+SV  L+  F N +GL +LLG EF+A + L+VY
Sbjct: 1   MEAILFLFFSSLTLTCGLFVITSKNPIHSVLFLVLVFFNVSGLLILLGVEFLAFLFLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG-----FLGSFFIGILAAELIVCASNF--MVF 115
           VGA+ V FLFI+MML I I   +    R       LG+   G L   LIV  S    ++ 
Sbjct: 61  VGAIAVLFLFIVMMLSIKIPEYKLIIYRYIPIGVILGT---GFLCEILIVFESELSSLIV 117

Query: 116 SAEGELSRLVFKGN-------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
           S  G+L+   F  N             N+E    VLYT YAY   I+G ILL+SMIGAI 
Sbjct: 118 SPFGKLTFNTFYLNSITLWDVNVVPITNIEVFAGVLYTHYAYFFIIAGIILLVSMIGAIT 177

Query: 163 LMLRHRRDIKRQDISKQLESNPDNSIV 189
           L L  R DIKRQ I KQ++     +I+
Sbjct: 178 LTLHRRIDIKRQKIYKQVQKEFAKTII 204


>gi|256821524|ref|YP_003145487.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kangiella
           koreensis DSM 16069]
 gi|256795063|gb|ACV25719.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kangiella
           koreensis DSM 16069]
          Length = 226

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 120/198 (60%), Gaps = 10/198 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FY+F+ + I+S+  VVTVRN + +V  L+  F +AA L++LL AEF+A+  ++
Sbjct: 1   MTAEQIVFYIFATLTIVSALGVVTVRNSVQAVLCLVLTFFSAAVLWMLLEAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VFS 116
           VYVGAV+V FLF++MMLD+D         +GF     +GIL A  ++    ++    VF 
Sbjct: 61  VYVGAVMVLFLFVVMMLDVDF----ASLNQGFTRYVPLGILVAIGLLIGLYWVLRGEVFG 116

Query: 117 AEG--ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            E   E  +   + +NVE +G++LYT Y Y  EI+G ILL++++ AI L  R RR+ + Q
Sbjct: 117 LEAMPEPVKHGAEHSNVEVLGRLLYTDYFYAFEIAGVILLVAIVAAISLTFRGRRERRGQ 176

Query: 175 DISKQLESNPDNSIVMVK 192
            +  Q  ++ D  + +VK
Sbjct: 177 SVPSQHRASKDERLHIVK 194


>gi|187923349|ref|YP_001894991.1| NADH dehydrogenase subunit J [Burkholderia phytofirmans PsJN]
 gi|187714543|gb|ACD15767.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           phytofirmans PsJN]
          Length = 230

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 126/207 (60%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+V     KR F+    +  L   +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDVLRKDFKR-FVP---MATLVGAIIVIETALILWHGYGA 116

Query: 121 LSRLVFKGNNVEN----------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +  +       N          IGKV+YT Y +  E++G +LL+++I AI L   H++D
Sbjct: 117 TATALRDTTAAANGMGDWSNTRLIGKVIYTDYIFAFEVAGLVLLVAIIAAIALTASHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ++S+Q++    + + +VK+KS K
Sbjct: 177 SKRQNVSEQVKVRAQDRVRVVKMKSEK 203


>gi|254491551|ref|ZP_05104730.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Methylophaga thiooxidans DMS010]
 gi|224463029|gb|EEF79299.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Methylophaga thiooxydans DMS010]
          Length = 199

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 122/197 (61%), Gaps = 8/197 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY F+ + + ++ +V+TVRNP+ +   L+ AF  +A ++L+L AEF+A+  ++VY
Sbjct: 1   MEKIIFYAFAAILLFAATMVITVRNPVRAALFLVLAFFTSAAIWLMLQAEFLAISLVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV+V FLF++MMLDID+    P ++ GF     +GI+ A LIV     ++ + + +++
Sbjct: 61  VGAVLVLFLFVVMMLDIDL---APLQE-GFTKYLPLGIIVAALIVAEMITVLNAPQFDIA 116

Query: 123 RLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQL 180
                G +N   +G++LYT Y YP EI+  IL ++++ AI L LR H R  K QD  KQ+
Sbjct: 117 ATAVAGESNTRMLGRLLYTVYVYPFEIASVILTVAIVAAITLTLREHSR--KLQDPGKQV 174

Query: 181 ESNPDNSIVMVKVKSGK 197
                  + +V ++S K
Sbjct: 175 AVRKQERVRLVDLRSAK 191


>gi|163868364|ref|YP_001609573.1| NADH dehydrogenase subunit J [Bartonella tribocorum CIP 105476]
 gi|161018020|emb|CAK01578.1| NADH dehydrogenase I chain J [Bartonella tribocorum CIP 105476]
          Length = 206

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 123/191 (64%), Gaps = 13/191 (6%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S+ +V+T RNP++SV  LI AF NAA LFLL GAEF+  I LVVYVGAV V FLF++MML
Sbjct: 20  SAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGFILLVVYVGAVAVLFLFVVMML 79

Query: 78  DID-IEVAEPRKKRGFLGSFFIGILAAELIV--CASNF------MVFSAEGELSRLVFKG 128
           D+D  E+     +   +G+    I+A ELI+   +S+F       V     +L     + 
Sbjct: 80  DVDFAELKSGTLRYAPIGALIGVIIAIELIIVFVSSHFSPVLRTHVTQPMPDLG----QR 135

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188
            N + +G +LYT Y +  +I+G ILL++MIGAIVL LRH+  +KRQ I+KQ+    +++I
Sbjct: 136 TNTQALGDILYTDYVFYFQIAGIILLVAMIGAIVLTLRHKSGVKRQSIAKQVSRTVESAI 195

Query: 189 VMVKVKSGKGI 199
            + +V+SGKGI
Sbjct: 196 EIKQVESGKGI 206


>gi|124266605|ref|YP_001020609.1| NADH-ubiquinone oxidoreductase, subunit J [Methylibium
           petroleiphilum PM1]
 gi|124259380|gb|ABM94374.1| NADH-ubiquinone oxidoreductase, chain J [Methylibium petroleiphilum
           PM1]
          Length = 215

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 118/199 (59%), Gaps = 9/199 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +S  FY+FS + + +SF V+T R+ +Y+   L+ AF NAA +++LL AEF+A+  ++
Sbjct: 1   MNTESALFYVFSAILLFASFRVITARSAVYAALYLVLAFFNAACVWMLLEAEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MMLD + +      ++GF   F +      ++AAE+I         
Sbjct: 61  VYVGAVMVLFLFVVMMLDANADTV----RKGFWQLFPVAGTIGAVIAAEMIWVLRRGFDL 116

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                L  +  +  N + +G  +YT Y YPL+I+  +LL+++I AI L LR R+D K  D
Sbjct: 117 PEAPPLDAVAAQMGNTKLLGIEIYTHYLYPLQIAAVLLLVAIIAAIALTLRKRKDSKYVD 176

Query: 176 ISKQLESNPDNSIVMVKVK 194
            S Q++    + + +V+++
Sbjct: 177 PSAQVKVRKADRVRIVQMQ 195


>gi|149927550|ref|ZP_01915804.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Limnobacter
           sp. MED105]
 gi|149823823|gb|EDM83049.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Limnobacter
           sp. MED105]
          Length = 210

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 115/191 (60%), Gaps = 6/191 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFY+F+ + + ++  V+T  N +++   L+ +F +A+ L++LL AEF+A+  ++VYVGAV
Sbjct: 7   FFYVFAAILVFAAVRVITASNAVHAALYLVLSFFSASALWMLLEAEFLAISLVLVYVGAV 66

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRL 124
           +V FLF++MM+D++++    + + GF  +  +  +   LI    + ++     +  L   
Sbjct: 67  MVLFLFVVMMVDVNMD----KVRAGFWKNLPVAAIVGSLIAFQMSVVLLRGFWDPNLETP 122

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
               NN E +GK+LYT+Y YP E++  ILL++M+ AI L LR R+D K Q  S Q+    
Sbjct: 123 EQAANNTEALGKLLYTEYLYPFEVAALILLVAMVAAIALTLRKRKDTKGQVPSDQVRVKS 182

Query: 185 DNSIVMVKVKS 195
            + + +V + +
Sbjct: 183 TDRVKLVSMPA 193


>gi|312796892|ref|YP_004029814.1| NADH-quinone oxidoreductase chain J [Burkholderia rhizoxinica HKI
           454]
 gi|312168667|emb|CBW75670.1| NADH-quinone oxidoreductase chain J (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 265

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 113/192 (58%), Gaps = 17/192 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ +  +S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 36  MEFTTVLFYIFALLMTVSGLKVITARNPVSSALFLVLAFFNAAAIWMLLEAEFLAILLVL 95

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     +R F     +  +   +IV  +  +++   G 
Sbjct: 96  VYVGAVMVLFLFVVMMLDINLDVL----RRDFRRFVPVATIVGAIIVIETALILWHGYGA 151

Query: 121 LSRLVFKG-------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               V                +N   IG+++Y+ Y +  E++G +LL++++ A+ L +R 
Sbjct: 152 TVSPVHDAVQATQAAGAGGALSNTRMIGRIIYSDYIFAFEVAGLVLLVAIVAALALTIRD 211

Query: 168 RRDIKRQDISKQ 179
            +D+KRQ +S+Q
Sbjct: 212 GKDVKRQRVSEQ 223


>gi|63025105|ref|YP_232799.1| NADH dehydrogenase subunit 6 [Geodia neptuni]
 gi|37961467|gb|AAP59164.1| NADH dehydrogenase subunit 6 [Geodia neptuni]
          Length = 185

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 112/182 (61%), Gaps = 8/182 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   IIS  +V++  NP++SV  L+ AF+ A+ LF+LL  EF+A+I L+VYVGA+ 
Sbjct: 5   FYLFALSIIISGVMVISALNPVHSVLWLVVAFIGASALFILLEVEFLALILLIVYVGAIA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGIL-AAELIVCASNFMVFSAEGELSRLV 125
           + FLF+IMML++     E   +  +L   F IGI+  +E+++  +      +    +   
Sbjct: 65  ILFLFVIMMLNLT--GLEGTDRSNYLPAGFIIGIVFLSEVLILQTRISTVESYRNSNWNF 122

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI----SKQLE 181
            + +N+E +G+VLYT Y Y   ++  ILL+++IGAIVL    R  IKRQDI    S+QL 
Sbjct: 123 MEASNIEVLGRVLYTNYCYLFILASLILLVALIGAIVLTHDTRVKIKRQDIFIQTSRQLW 182

Query: 182 SN 183
            N
Sbjct: 183 KN 184


>gi|164421182|ref|YP_001648568.1| NADH dehydrogenase subunit 6 [Ptilocaulis walpersi]
 gi|158938964|gb|ABW83889.1| NADH dehydrogenase subunit 6 [Ptilocaulis walpersi]
          Length = 185

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 113/180 (62%), Gaps = 11/180 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+F  IIS  +VV+  NP+YSVF LI AF+NA+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYLFAFNIIISGIMVVSALNPVYSVFWLIIAFINASILFILLDVDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGI---LAAELIVCASNFMVFSAEGELSR 123
           + FLF+IMML++ I+    +    +L   F IG+   +   +I+ ++ F  F     +++
Sbjct: 65  ILFLFVIMMLNL-IDYERGKDMSNYLPAGFVIGVIFFITCRIILLSNQFSTF----YVNK 119

Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             F  N  N+   G+VLYT Y Y   I+  ILL++MIGAIVL    +++ K QDI  Q+ 
Sbjct: 120 FDFIENFSNITGFGRVLYTDYYYLFLIASLILLIAMIGAIVLTHEIKKEKKNQDIFIQIS 179


>gi|240850592|ref|YP_002971992.1| NADH dehydrogenase I subunit J [Bartonella grahamii as4aup]
 gi|240267715|gb|ACS51303.1| NADH dehydrogenase I subunit J [Bartonella grahamii as4aup]
          Length = 206

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 124/187 (66%), Gaps = 5/187 (2%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S+ +V+T RNP++SV  LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF++MML
Sbjct: 20  SAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFVVMML 79

Query: 78  DID-IEVAEPRKKRGFLGSFFIGILAAELIVC-ASNFMVFSAEGELSRL---VFKGNNVE 132
           D+D  E+     +   +G+    I+A ELIV   S++        +++    + +  N +
Sbjct: 80  DVDFAELKSGTLRYAPIGALIGVIIAVELIVVFVSSYFSPVLRTHVTQPMPDLTQRTNTQ 139

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
            +G +LYT Y +  +I+G ILL++MIGAIVL LRH+  +KRQ I++Q+    +++I + +
Sbjct: 140 ALGDILYTDYVFYFQIAGMILLVAMIGAIVLTLRHKLGVKRQSIAEQVSRTVESAIEIKQ 199

Query: 193 VKSGKGI 199
           V+SGKG+
Sbjct: 200 VESGKGM 206


>gi|164421001|ref|YP_001648496.1| NADH dehydrogenase subunit 6 [Topsentia ophiraphidites]
 gi|158938931|gb|ABW83858.1| NADH dehydrogenase subunit 6 [Topsentia ophiraphidites]
          Length = 188

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 113/183 (61%), Gaps = 11/183 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+F  IIS  +V++  NP++SV  LI AF +AA LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYLFAFNVIISGIMVISALNPVHSVLWLIVAFTSAAALFILLEVDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGIL-AAELIVCASNFMVFSAE----GEL 121
           + FLF+IMML++  ++        +L   F IG++   E+++  S    F+         
Sbjct: 65  ILFLFVIMMLNLT-DLGGGGDMSNYLPAGFIIGVVFLFEVLIFQSRMATFNLSYINYPHN 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI----S 177
              + K  N+E +G+VLYT Y Y   ++ FILL++MIGAIVL    R +IKRQDI    S
Sbjct: 124 WDFIEKAPNIEVLGRVLYTNYYYLFIMASFILLVAMIGAIVLTHSTREEIKRQDIFIQTS 183

Query: 178 KQL 180
           +QL
Sbjct: 184 RQL 186


>gi|49474186|ref|YP_032228.1| NADH dehydrogenase subunit J [Bartonella quintana str. Toulouse]
 gi|49239690|emb|CAF26065.1| NADH dehydrogenase I, J subunit [Bartonella quintana str. Toulouse]
          Length = 206

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/187 (44%), Positives = 124/187 (66%), Gaps = 5/187 (2%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S+ +V+T RNP++SV  LI AF NAA LFLL GAEF+ +I L+VYVGAV V FLF+IMML
Sbjct: 20  SAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLIVYVGAVAVLFLFVIMML 79

Query: 78  DID-IEVAEPRKKRGFLGSFFIGILAAELI--VCASNF--MVFSAEGELSRLVFKGNNVE 132
           D+D  E+     +   +G+F   ++A ELI    +S+F  +V +   +    + +  N +
Sbjct: 80  DVDFAELKSGALRYAPIGAFIGVVVAVELIFVFVSSHFSPVVRTHVTQPMPNLAQRTNTQ 139

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
            +G +LYT Y +  +++G ILL++MIGAIVL LRH+  ++RQ I+ Q+     N+I + +
Sbjct: 140 ALGDILYTDYVFYFQVAGIILLVAMIGAIVLTLRHKSGVRRQSIAVQVSRTVANAIEIKQ 199

Query: 193 VKSGKGI 199
           V+SGKGI
Sbjct: 200 VESGKGI 206


>gi|292493659|ref|YP_003529098.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           halophilus Nc4]
 gi|291582254|gb|ADE16711.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           halophilus Nc4]
          Length = 201

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 122/202 (60%), Gaps = 13/202 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY F+ + + ++ +V+TVRNP+ +   L+ AF  +A ++LLL AEF+A++ ++VY
Sbjct: 1   MEKILFYSFAAILLFAATMVITVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119
           +GAV+V FLF++MMLDI++    P ++ GF     +G L A LI       V  AE    
Sbjct: 61  IGAVMVLFLFVVMMLDINL---APLRE-GFARYLPVGFLVAALIAL-EMMAVLGAENFGL 115

Query: 120 -ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            + +    +G   +N + +G +LYT Y YP E++  ILL++++ AI L LR RR  K QD
Sbjct: 116 EQFTSPPPQGPDYSNTKELGNLLYTVYVYPFELASVILLVAIVAAIALTLR-RRTSKAQD 174

Query: 176 ISKQLESNPDNSIVMVKVKSGK 197
             +Q+     + + +VK+ + K
Sbjct: 175 PVQQIRVRRQDRVRLVKMAAEK 196


>gi|56478185|ref|YP_159774.1| NADH dehydrogenase I, chain J [Aromatoleum aromaticum EbN1]
 gi|56314228|emb|CAI08873.1| NADH dehydrogenase I, chain J [Aromatoleum aromaticum EbN1]
          Length = 200

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 118/203 (58%), Gaps = 10/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY+ + + + +   V+T RNP+++   L+ +F +A G++LLL AEF+A++ ++
Sbjct: 1   MDFKTFVFYVLAVIMVFAGLRVITARNPVHAALFLVLSFFSAGGIWLLLAAEFLAVVLVM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC------ASNFMV 114
           VYVGAV+V FLF++MMLDI+++    R ++GF     +G L   L+V          +  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLD----RLRQGFWSYLPVGALIGVLLVVEMALVLGGRYFG 116

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             A  E        +N   +G++LYT Y YP E++  +LL++MI A+ L LR R+ ++  
Sbjct: 117 LEAMPEPPAAQAGYSNTRELGRLLYTDYVYPFELASLLLLVAMIVAVTLTLRKRKGVRYL 176

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
           + S+Q+     + + ++ + + K
Sbjct: 177 NPSEQISIKRGDRVELISMPAEK 199


>gi|284794666|ref|YP_003412024.1| NADH dehydrogenase subunit 6 [Lubomirskia baicalensis]
 gi|284098135|gb|ADB78066.1| NADH dehydrogenase subunit 6 [Lubomirskia baicalensis]
          Length = 195

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 113/192 (58%), Gaps = 17/192 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   IIS  +V++  NP++SV  LI AF +A+ LF+LL  EF+A+I L+VYVGA+ 
Sbjct: 5   FYLFTLGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGIL-AAELIVCASNFMVFSAEGELSRL- 124
           + FLF+IMML++ D+E             F IG++   E+       MV    G +S   
Sbjct: 65  ILFLFVIMMLNLTDLEGGGDMSNY-LPAGFIIGVVFLFEIAHVMGGRMVSWPHGGISGTL 123

Query: 125 --------VFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                   +  GN NVE +G+VLYT Y Y   I+ FILL++MIGAIVL    + +IKRQD
Sbjct: 124 SSDIAQPAILLGNPNVEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHDSKTEIKRQD 183

Query: 176 I----SKQLESN 183
           I    S+QL  +
Sbjct: 184 IFIQTSRQLWQD 195


>gi|91776404|ref|YP_546160.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Methylobacillus flagellatus KT]
 gi|91710391|gb|ABE50319.1| NADH dehydrogenase subunit J [Methylobacillus flagellatus KT]
          Length = 212

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 119/206 (57%), Gaps = 12/206 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ Q   FY  + + + +   V+T RNP+++   L+ AF  AAG++LLL AEF+A+  ++
Sbjct: 1   MIFQDYVFYALAAILLFAGVRVITTRNPVHATLFLVLAFFTAAGIWLLLEAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAE--LIVCASNFM 113
           VYVGAV+V FLF++MMLDI+++    + + GF  +  +      ++A E  +I+ + +F 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLD----KMREGFWNALPVALPVGLLMAGEMVMILGSKHFS 116

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                    R     N  E IG+ LYT Y  P E++  +LL++++ AI L LR R+D K 
Sbjct: 117 PDMLSTPAPRPAGYSNTAE-IGRQLYTDYLLPFELASVVLLVAIVAAIALTLRERKDSKF 175

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
            D ++Q++    + + +V + + K I
Sbjct: 176 MDPAEQVKVKRADRVRIVSMPAEKEI 201


>gi|164420802|ref|YP_001648470.1| NADH dehydrogenase subunit 6 [Ephydatia muelleri]
 gi|158938918|gb|ABW83846.1| NADH dehydrogenase subunit 6 [Ephydatia muelleri]
          Length = 196

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 113/193 (58%), Gaps = 18/193 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   IIS  +V++  NP++SV  LI AF +A+ LF+LL  EF+A+I L+VYVGA+ 
Sbjct: 5   FYLFTLGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGIL-AAELIVCASNFMVFSAEGELSRL- 124
           + FLF+IMML++ D+E             F IG++   E+       MV    G +S   
Sbjct: 65  ILFLFVIMMLNLTDLEGGGDMSNY-LPAGFIIGVVFLFEIAHVMGGRMVSWPHGGISGTL 123

Query: 125 ---------VFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                    +  GN NVE +G+VLYT Y Y   I+ FILL++MIGAIVL    + +IKRQ
Sbjct: 124 SSDIAAQPAILLGNPNVEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHDSKTEIKRQ 183

Query: 175 DI----SKQLESN 183
           DI    S+QL  +
Sbjct: 184 DIFIQTSRQLWQD 196


>gi|319407258|emb|CBI80897.1| NADH dehydrogenase I chain J [Bartonella sp. 1-1C]
          Length = 206

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 118/189 (62%), Gaps = 5/189 (2%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           +IS+ +VV  RNP++SV  LI AF NAA LFLL GAEF+ +I LVVYVGA+ V FLF++M
Sbjct: 18  LISAVIVVAARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAIAVLFLFVVM 77

Query: 76  MLDID---IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLVFKGNN 130
           MLD+D   ++    R          I  +    +  + +F   S     + +  + +  N
Sbjct: 78  MLDVDFAELKSGTLRYAPIAAFIGIIIAIELIFVFISDSFSPVSGVHTTQPTPDLTQRTN 137

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190
            + +G +LYT Y +  +ISG ILL++MIGAIVL LRHR  +KRQ I+ Q+   P+++I +
Sbjct: 138 TQALGDILYTDYVFYFQISGLILLVAMIGAIVLTLRHRSGVKRQSIAVQVARTPESAIEI 197

Query: 191 VKVKSGKGI 199
            KV+SGKGI
Sbjct: 198 KKVESGKGI 206


>gi|170676855|ref|YP_001742098.1| NADH dehydrogenase subunit 6 [Suberites domuncula]
 gi|170649721|emb|CAM84213.1| NADH dehydrogenase subunit 6 [Suberites domuncula]
          Length = 189

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 110/179 (61%), Gaps = 7/179 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+F  I+S  +V++  NP++SVF LI AF +AA LF+LL  EF+A I L+VYVGA+ 
Sbjct: 5   FYLFAFGVILSGIMVISALNPVHSVFWLIVAFTSAALLFILLEVEFIAFIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGS-FFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           + FLF+IMML++      P+    ++ +   IG++    ++  S++   S      R  +
Sbjct: 65  ILFLFVIMMLNLTDLGNNPQDMSNYMPTGLIIGVVVILEVLIFSSWKSNSEGSPYLRWDY 124

Query: 127 --KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD----ISKQ 179
             K +N+E +G+VLYT Y Y   ++ FILL +MIGAIVL       IKRQD    +S+Q
Sbjct: 125 IEKTSNIEVLGRVLYTDYYYLFILASFILLSAMIGAIVLTQTKSVGIKRQDSFTQVSRQ 183


>gi|170742520|ref|YP_001771175.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium sp. 4-46]
 gi|168196794|gb|ACA18741.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium sp. 4-46]
          Length = 206

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 13/195 (6%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + + S  +V+  RNP+ SV  LI AFVNAAGLF+L+GAEF+AMI +VVYVGAV V FLF+
Sbjct: 14  ITVASGLVVIAARNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVVVYVGAVAVLFLFV 73

Query: 74  IMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
           +MMLD+D   AE R+  GF     +G+    +   EL++   ++ +          V  G
Sbjct: 74  VMMLDVDF--AELRQ--GFQDYLPVGALIGAVFLIELLLVVGSWAIDPGLVHAPLAVAPG 129

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
                N + +G VLYT Y +  +I+G ILL++MIGAIVL LR R  +KRQDI+ Q     
Sbjct: 130 GEQITNTQALGLVLYTNYFFFFQIAGLILLVAMIGAIVLTLRDRPGVKRQDIAVQNARTQ 189

Query: 185 DNSIVMVKVKSGKGI 199
             ++ + KV + +G+
Sbjct: 190 ALAVELRKVPTRQGV 204


>gi|62161302|ref|YP_214868.1| NADH dehydrogenase subunit 6 [Axinella corrugata]
 gi|55275033|gb|AAV49311.1| NADH dehydrogenase subunit 6 [Axinella corrugata]
          Length = 183

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 111/182 (60%), Gaps = 10/182 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF    I+S  +V++  NP++SV  LI AF +A  LF+LL  EF+A++ L+VYVGA+ 
Sbjct: 5   FYLFXLSVILSGIMVISAFNPVHSVLWLIVAFTSATALFILLEVEFIALMFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFSAEGELSRL 124
           + FLF+IMML++ D E  E          F IG++   LI C   S+F   S+      L
Sbjct: 65  ILFLFVIMMLNLTDXEGGEDMSNY-LPAGFIIGVVF--LINCRMVSHFGQQSSYYISWDL 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI----SKQL 180
           + K  N+E +G+VLYT Y Y   I+ FILL++MIG IVL    R +IKRQ+I    S+QL
Sbjct: 122 IEKAPNIEVLGRVLYTNYYYLFIIASFILLVAMIGVIVLTHDTRSEIKRQNIFLQTSRQL 181

Query: 181 ES 182
            +
Sbjct: 182 WA 183


>gi|1352591|sp|P48925|NU6M_CYACA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|758173|emb|CAA88767.1| NADH dehydrogenase subunit 6 [Cyanidium caldarium]
          Length = 201

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 123/192 (64%), Gaps = 7/192 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY FS ++++S+ +V++V+NP++SV  LI  F N  GL LLLGAEF++++ L+VYVGA+ 
Sbjct: 7   FYFFSGLSLVSASIVISVKNPVFSVVFLILVFFNVVGLLLLLGAEFLSLLFLIVYVGAIA 66

Query: 68  VFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL-- 124
           V FLF++M+L++  IE+        F GS  + I   E+ +  ++ + F++   L R   
Sbjct: 67  VLFLFVVMILNLKFIELRSSFFYYAFFGSLIMAIFLFEIFIILNSDLTFASSYFLERKRI 126

Query: 125 ----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
               ++   N++ +G VLYT Y+Y   +SGF+LL++++GAI+L L  R  I+RQD + Q+
Sbjct: 127 WVQELYSYTNLQILGNVLYTSYSYLFILSGFVLLVAILGAIILTLYQRSQIRRQDPNVQV 186

Query: 181 ESNPDNSIVMVK 192
             N D++I   K
Sbjct: 187 VRNFDDTIRFFK 198


>gi|163855996|ref|YP_001630294.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella petrii DSM
           12804]
 gi|163259724|emb|CAP42025.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella petrii]
          Length = 215

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/198 (36%), Positives = 118/198 (59%), Gaps = 7/198 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +I++F V+T R+P+ +V  LI AF NAA L++LLGAEF+A++ ++
Sbjct: 1   MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM---VFSA 117
           VYVGAV+V FLF++MMLDI I+      + G      +G+L   ++V   +F+    +  
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRIDTL----RHGLKTYLPLGLLIGAVLVVEMSFVLGATWYG 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            G  + +    NN   +G+V+YTQY Y +E+   +LL+ MI AI L LR RRD K  D S
Sbjct: 117 AGPQASMAADYNNTRALGEVMYTQYVYAVEVGAALLLVGMIAAIALTLRRRRDAKYNDPS 176

Query: 178 KQLESNPDNSIVMVKVKS 195
             +     +   +V + +
Sbjct: 177 AAVRVRAKDRFRLVSMPA 194


>gi|164420978|ref|YP_001648600.1| NADH dehydrogenase subunit 6 [Xestospongia muta]
 gi|158938983|gb|ABW83907.1| NADH dehydrogenase subunit 6 [Xestospongia muta]
          Length = 187

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 20/186 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   IIS  +V++  +P+YSV  LI AFV+A+ LF+LL  EF+A I L+VYVGA+ 
Sbjct: 5   FYLFTLGVIISGIMVISALSPVYSVLWLIMAFVSASALFILLEVEFIAFIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF- 126
           + FLF+IMML++  E             F IG+     +     F+ ++   + S++V  
Sbjct: 65  ILFLFVIMMLNLTEETIGDDMSNYLPAGFIIGV-----VFLFEIFIFWNGTTDGSQMVLY 119

Query: 127 ---KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-----RDIKRQDI-- 176
              K  N+E +G+VLYT Y Y   ++ FILL++MIGAIV  L H      +D KRQDI  
Sbjct: 120 WVVKNTNIEVLGRVLYTDYYYLFIVASFILLVAMIGAIV--LTHDTGTEIQDRKRQDIFV 177

Query: 177 --SKQL 180
             S+QL
Sbjct: 178 QTSRQL 183


>gi|319404250|emb|CBI77843.1| NADH dehydrogenase I chain J [Bartonella rochalimae ATCC BAA-1498]
          Length = 206

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 119/189 (62%), Gaps = 5/189 (2%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           +IS+ +VV  RNP++SV  LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF++M
Sbjct: 18  LISAVIVVVARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFVVM 77

Query: 76  MLDID---IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLVFKGNN 130
           MLD+D   ++    +          I  +    +  +++F   S     + +  + +  N
Sbjct: 78  MLDVDFAELKSGTLKYAPIGAFIGIIIAIELIFVFISNSFFPVSGVHATQPTPDLTQRTN 137

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190
            + +G +LYT Y +  +ISG ILL++MIGAIVL LRHR  +KRQ I+ Q+   P+++I +
Sbjct: 138 TQALGDILYTDYVFYFQISGLILLVAMIGAIVLTLRHRSGVKRQSIAVQVARTPESAIEI 197

Query: 191 VKVKSGKGI 199
            KV+SGKGI
Sbjct: 198 KKVESGKGI 206


>gi|88812967|ref|ZP_01128210.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrococcus
           mobilis Nb-231]
 gi|88789745|gb|EAR20869.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrococcus
           mobilis Nb-231]
          Length = 202

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L FY+F+ + + ++ +V+T +NP++S   L+ AF N+A L+L+  AEF+ +  ++VYVGA
Sbjct: 5   LLFYVFAAVLLFAATMVITAKNPVHSALFLVLAFFNSAALWLMAEAEFLGIALVLVYVGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V+V FLF++MMLDI++    P ++ GF     IG L   ++V     +V S +     L+
Sbjct: 65  VMVLFLFVVMMLDINL---APMRE-GFARYLPIGALVGCVMVVEMALVVGSKD---VNLI 117

Query: 126 FKG-----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             G           +N + +G VLYT YAYP EI+  +LL++++ AI+L  R R   K+Q
Sbjct: 118 HGGPVTSAAEGVGMSNTKALGSVLYTVYAYPFEIASVVLLVAIVAAIMLTHRRRPGTKQQ 177

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
           +I +Q+    +  + +V +   K
Sbjct: 178 NIDRQVRVRKEQRLRIVTMAPEK 200


>gi|11466532|ref|NP_044781.1| NADH dehydrogenase subunit 6 [Reclinomonas americana]
 gi|2258362|gb|AAD11896.1| NADH dehydrogenase subunit 6 [Reclinomonas americana]
          Length = 205

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 118/194 (60%), Gaps = 10/194 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FY FSF+A+ S+ LV+   NPI+SV  L+  F + +GLF+L+ AEF+AMI ++VYVG
Sbjct: 4   EILFYFFSFLALSSATLVIASSNPIHSVLFLVLVFCSTSGLFILIEAEFIAMIFIMVYVG 63

Query: 65  AVIVFFLFIIMMLDI-----DIEVAEPRKKRGFLGSFFIGILA----AELI-VCASNFMV 114
           A+ V FLF++MML++     ++ +       G +G  F+  L     ++LI +   N   
Sbjct: 64  AIAVLFLFVVMMLNVRLVQFNVNMLRYLPLGGVIGLIFLLELFLIIDSDLIPLFGLNINN 123

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             A  + +  +    NVE IGK+LYT Y Y   +SG ILL++MIGAIVL +  R  ++RQ
Sbjct: 124 NIAPFQWADTIDSITNVEAIGKLLYTHYFYLFLVSGMILLVAMIGAIVLTMYKRVGVRRQ 183

Query: 175 DISKQLESNPDNSI 188
           DI++QL  +   +I
Sbjct: 184 DINEQLSRDFKETI 197


>gi|110816045|ref|YP_684376.1| NADH dehydrogenase subunit 6 [Oltmannsiellopsis viridis]
 gi|86450256|gb|ABC96335.1| NADH dehydrogenase subunit 6 [Oltmannsiellopsis viridis]
          Length = 207

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 112/193 (58%), Gaps = 25/193 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS +A+IS+  V   +NP++SV  LI  F NA+GL +L+G +F+A+I ++VYVGA+ 
Sbjct: 5   FYLFSSLALISAVFVTQAKNPVHSVLFLILVFFNASGLLILMGLDFIALILMIVYVGAIT 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMV-------F 115
             FLF++M+LDI  E    ++ R     G LG  F+     ++ V   N +V       F
Sbjct: 65  TLFLFVVMLLDIKTEEVSEKRLRYLPIGGLLGVLFL----VQIFVVIENSLVPHWVHVPF 120

Query: 116 SAEG---------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +            + + L     N+E +G+VLYT Y+    ++ F+LL++MIG+IVL + 
Sbjct: 121 TNNPVILDHLQYLKWNTLTDNYTNIEALGQVLYTVYSLHFILASFVLLVAMIGSIVLTMV 180

Query: 167 HRRDIKRQDISKQ 179
               +KRQ++S+Q
Sbjct: 181 KGAYVKRQEVSEQ 193


>gi|121602205|ref|YP_989079.1| NADH dehydrogenase subunit J [Bartonella bacilliformis KC583]
 gi|120614382|gb|ABM44983.1| NADH dehydrogenase (quinone), J subunit [Bartonella bacilliformis
           KC583]
          Length = 206

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/205 (45%), Positives = 135/205 (65%), Gaps = 11/205 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + + FFYLFSF+ ++S+ +V+  RNP++SV  LI AF NAA LFLL GAEF+ ++ LVVY
Sbjct: 5   LAAAFFYLFSFIMLMSAIIVIAARNPVHSVLFLILAFFNAAALFLLAGAEFLGLLLLVVY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF----LGSFFIGILAAELIVC--ASNFMVFS 116
           VGAV V FLF++MMLD+D   AE  K+  F    +G+    I+A ELI+   +++F +  
Sbjct: 65  VGAVAVLFLFVVMMLDVDF--AE-LKRNAFQYVPVGALVGIIIAVELIIVFFSNDFSLIL 121

Query: 117 AEGELSRL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                  +  +    N + +G +LYT Y +  +I+G ILL++MIGAIVL LRH+  +KRQ
Sbjct: 122 GTHTTQPMPSLEHRTNTQALGDILYTDYVFYFQIAGMILLVAMIGAIVLTLRHKAGVKRQ 181

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
            I  Q+  NP+ +I + KV+SGKGI
Sbjct: 182 SIGIQVARNPETAIEIKKVESGKGI 206


>gi|74317169|ref|YP_314909.1| NADH dehydrogenase I subunit J [Thiobacillus denitrificans ATCC
           25259]
 gi|74056664|gb|AAZ97104.1| NADH dehydrogenase I chain J [Thiobacillus denitrificans ATCC
           25259]
          Length = 211

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 116/196 (59%), Gaps = 10/196 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F+ + + +   V+T RNP+++   L+ AF  AAGL+LLL AEF+A+  ++VYVGAV+
Sbjct: 7   FYFFAAILVFAGLRVITARNPVHAALFLVLAFFTAAGLWLLLEAEFLAITLVLVYVGAVM 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------FSAEGEL 121
           V FLF++MMLDI+++    + + GF     +  + A L+V     ++          G  
Sbjct: 67  VLFLFVVMMLDINLD----QLREGFWNYLPLAGVVAILLVIEMALILGGRHFGLDVIGVP 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                  +N + +G+++YT Y Y  E++  ILL++++ AI L LR R+D K  D ++Q++
Sbjct: 123 PAQPADYSNTKELGRLIYTDYVYAFELAAVILLVAIVAAIALTLRRRKDTKYIDPAQQVK 182

Query: 182 SNPDNSIVMVKVKSGK 197
              ++ + ++K+ + K
Sbjct: 183 VKRNDRLRIIKMPAEK 198


>gi|317097065|ref|YP_004123207.1| NADH dehydrogenase subunit 6 [Oscarella viridis]
 gi|308912700|gb|ADO51460.1| NADH dehydrogenase subunit 6 [Oscarella viridis]
          Length = 197

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 14/186 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+   IIS  +V++  NPI+SVF LI  F+ A+ LF+LLG +F+A+I L+VYVGA+ 
Sbjct: 5   FYIFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119
           + FLF+IMML++ D+E          +GS    +L  E+++       +S          
Sbjct: 65  ILFLFVIMMLNLTDLEGGGDMSNYIPIGSVIGVLLLFEVLIMGREATAYSYRDIDHECLR 124

Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 + S  + K +N+E +G++LYT Y Y   I+ FILL++MIGAIVL      ++KR
Sbjct: 125 GGVDAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGTELKR 184

Query: 174 QDISKQ 179
           QD+  Q
Sbjct: 185 QDLFTQ 190


>gi|11467107|ref|NP_054408.1| NADH dehydrogenase subunit 6 [Marchantia polymorpha]
 gi|585594|sp|P26850|NU6M_MARPO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|404360|gb|AAB27401.1| NADH dehydrogenase subunit 6=nad6 gene product [Marchantia
           polymorpha=liverworts, Peptide Mitochondrial, 199 aa]
 gi|786192|gb|AAC09405.1| nad6 [Marchantia polymorpha]
          Length = 199

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 111/204 (54%), Gaps = 23/204 (11%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+F  +A++S  +V+  +NP++SV  LI  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFYVFVVLALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFF------------IGILAAELIVC 108
           + V FLF++MML I IE       R     G +G  F            I IL  +L   
Sbjct: 62  IAVLFLFVVMMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILPTKLSAT 121

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              + V++ +      +    N+E +G +LYT Y +   +S  ILL+++IGAIVL +   
Sbjct: 122 YLTYTVYAGK------IHSWTNLETLGNLLYTTYFFLFLVSSLILLVALIGAIVLTMHKT 175

Query: 169 RDIKRQDISKQLESNPDNSIVMVK 192
             +KRQD+  Q   +  N+I  V+
Sbjct: 176 TKVKRQDVFIQNAIDFQNTIKKVR 199


>gi|325915548|ref|ZP_08177859.1| NADH dehydrogenase subunit J [Xanthomonas vesicatoria ATCC 35937]
 gi|325538264|gb|EGD09949.1| NADH dehydrogenase subunit J [Xanthomonas vesicatoria ATCC 35937]
          Length = 220

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 120/207 (57%), Gaps = 20/207 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S+ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 6   SIAFYAFSAIAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC------------ASNF 112
           AV+V FLF++MMLDID      R + G++    +G++ A  ++             A+ F
Sbjct: 66  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRTATPF 121

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            V +A  + +      +N+  + K LYT++    E +  IL ++++ A++L LR R  IK
Sbjct: 122 PVDNAAAQAA----DSSNLTWLAKSLYTEFLLAFEFAAVILTVAVVAAVMLTLRKRTGIK 177

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
            Q+ S+Q      + + +VK+   K +
Sbjct: 178 LQNASEQSRVKAGDRLRIVKMAVEKPV 204


>gi|11465629|ref|NP_049300.1| NADH dehydrogenase subunit 6 [Porphyra purpurea]
 gi|4106936|gb|AAD03103.1| NADH dehydrogenase subunit 6 [Porphyra purpurea]
          Length = 209

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 26/198 (13%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++FS ++++S+ LVV++ N +YSV  LI  F N A + LLLGAEF++ + L+VYVGA+ 
Sbjct: 7   FWIFSIISLLSACLVVSLANAVYSVLFLIIVFCNTASILLLLGAEFLSFLFLIVYVGAIA 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----------------AAELIVCAS 110
           V FLF++MML++ I+ A+       L  F I  +                    L +   
Sbjct: 67  VLFLFVVMMLNVKIDGAKVNYTTILLIGFLISSILLFQFSSAMQIDLDAYSNIRLNLTEV 126

Query: 111 NF---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           NF    +++ E  L       +NVE+IG VLYT Y+    +  FILLL+MIG+I+L +  
Sbjct: 127 NFPTTTLWTQENSLP------SNVESIGLVLYTSYSLVFILCAFILLLAMIGSIILTMNQ 180

Query: 168 RRDIKRQDISKQLESNPD 185
           R  +K+Q I+ QL  + +
Sbjct: 181 RNGVKKQQITLQLHRDQN 198


>gi|317097445|ref|YP_004123644.1| NADH dehydrogenase subunit 6 [Oscarella tuberculata]
 gi|317134139|ref|YP_004123302.1| NADH dehydrogenase subunit 6 [Oscarella lobularis]
 gi|308912624|gb|ADO51389.1| NADH dehydrogenase subunit 6 [Oscarella tuberculata]
 gi|308912746|gb|ADO51503.1| NADH dehydrogenase subunit 6 [Oscarella lobularis]
          Length = 197

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 112/186 (60%), Gaps = 14/186 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+   IIS  +V++  NPI+SVF LI  F+ A+ LF+LLG +F+A+I L+VYVGA+ 
Sbjct: 5   FYIFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIV-----CASNFMVFSAE--- 118
           + FLF+IMML++ D+E          +GS    +L  E+++      A N+     E   
Sbjct: 65  ILFLFVIMMLNLTDLEGGGDMSNYIPIGSGIGVLLLFEVLIMGREATAYNYRDIDHECLK 124

Query: 119 -----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 + S  + K +N+E +G++LYT Y Y   I+ FILL++MIGAIVL      ++KR
Sbjct: 125 GGVDAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELKR 184

Query: 174 QDISKQ 179
           QD+  Q
Sbjct: 185 QDLFTQ 190


>gi|164421137|ref|YP_001648582.1| NADH dehydrogenase subunit 6 [Ectyoplasia ferox]
 gi|158668128|gb|ABW76588.1| NADH dehydrogenase subunit 6 [Ectyoplasia ferox]
          Length = 185

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 116/186 (62%), Gaps = 11/186 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+F  IIS  +V++  NPIYSVF LI AF+NA+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYLFAFNVIISGIMVISALNPIYSVFWLIIAFINASVLFILLEVDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGI---LAAELIVCASNFMVFSAEGELSR 123
           + FLF+IMML++ I+  + R    +L   F IG+   +   +I+ +S      +   L+R
Sbjct: 65  ILFLFVIMMLNL-IDYEKGRDMSNYLPAGFVIGVIFFITCRIIILSSQ----LSLFSLNR 119

Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             +  N  N+  +G+VLYT Y Y   I+  ILL++MIGAI+L    +++ K QD+  Q+ 
Sbjct: 120 FDYVENFSNIIGLGRVLYTDYYYLFLIASLILLVAMIGAIILTHETKKEKKDQDMFIQIS 179

Query: 182 SNPDNS 187
               +S
Sbjct: 180 RELWDS 185


>gi|237746742|ref|ZP_04577222.1| predicted protein [Oxalobacter formigenes HOxBLS]
 gi|229378093|gb|EEO28184.1| predicted protein [Oxalobacter formigenes HOxBLS]
          Length = 220

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 119/203 (58%), Gaps = 16/203 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++ FY F+ +  +++  VVT RNP+++V  L+ +F   A L++LL AEF+A+I L+
Sbjct: 1   MEFETVLFYAFAAILTLAALRVVTSRNPVHAVLYLVLSFFTGAALWILLKAEFLALILLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115
           VYVGAV+V FLF++MM+DI++   +   ++    + F+G     LIV   + ++F     
Sbjct: 61  VYVGAVMVLFLFVVMMMDIELGELKRIARKNLALALFVG----GLIVLEMSAVIFRGFFA 116

Query: 116 ---SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               A  + SR+         IGK L+T Y + +EI+  ILL+++I A+ L +R R D +
Sbjct: 117 LDLHAPDDASRI----GLTSEIGKALFTDYLFSVEIAAIILLVALIAAVTLTIRRRSDAR 172

Query: 173 RQDISKQLESNPDNSIVMVKVKS 195
               S  +   P++ + +V++K+
Sbjct: 173 YTSASVAIRVRPEDRLRVVEMKA 195


>gi|239811642|gb|ACS27129.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo]
 gi|239811682|gb|ACS27168.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo]
 gi|288871938|dbj|BAI70624.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo]
          Length = 204

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 17/202 (8%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFYLF+ + +IS+F+ +TV NP++SV  LI  FV +A + LL+  EF++++ +++YVGA+
Sbjct: 6   FFYLFAGLILISAFMTITVSNPVHSVLFLILVFVGSAAVLLLMEVEFLSLMFIIIYVGAI 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFF---------IGILAAELIVCASNF 112
            V FLF++MMLDI +  +     R     GFLG  F           + A +  V +S  
Sbjct: 66  AVLFLFVVMMLDIKLSSSNNNYLRYLSIGGFLGFLFFVETYYLVETSVFAPQ--VDSSLV 123

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +  S +  ++RL     N+E +G+ LYT Y +   I+G +LL+ MIGAIVL L      K
Sbjct: 124 LESSYQDWITRLD-TLTNMECLGQFLYTYYFFHFLIAGIVLLVGMIGAIVLTLHVNHTSK 182

Query: 173 RQDISKQLESNPDNSIVMVKVK 194
            Q I KQL     N+  +  + 
Sbjct: 183 NQLICKQLSRQVKNATFLTTIS 204


>gi|257095310|ref|YP_003168951.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047834|gb|ACV37022.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 200

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 115/186 (61%), Gaps = 11/186 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY  S + + +   V+T RNP+++   L+ AF  A+G+++LL AEF+AM  ++
Sbjct: 1   MEFKTFVFYFLSAILVFAGLRVITARNPVHAALFLVLAFFTASGVWILLQAEFLAMALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114
           VYVGAV+V FLF++MMLDI+++    R + GF     LGS    ++ AE+ +V   N++ 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLD----RLREGFWSYLPLGSIIALLMVAEMGLVLGGNYLG 116

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
              E  + +     +NV+ +G++++T+Y YP E++  ILL+ ++ A+ L  R +R  K  
Sbjct: 117 LF-ESSVRQTGADESNVQAVGRLMFTEYVYPFELASVILLVGIVAAVALTQRGKRKNKAV 175

Query: 175 DISKQL 180
           + S+Q+
Sbjct: 176 NPSQQV 181


>gi|33592016|ref|NP_879660.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis
           Tohama I]
 gi|33597902|ref|NP_885545.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella parapertussis
           12822]
 gi|33602807|ref|NP_890367.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella bronchiseptica
           RB50]
 gi|33571660|emb|CAE41153.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis
           Tohama I]
 gi|33574331|emb|CAE38667.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella parapertussis]
 gi|33577249|emb|CAE35806.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella bronchiseptica
           RB50]
 gi|332381432|gb|AEE66279.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis CS]
          Length = 215

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/198 (36%), Positives = 119/198 (60%), Gaps = 7/198 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ +F+ +I++F V+T R+P+ +V  LI AF NAA +++LLGAEF+A++ ++
Sbjct: 1   MTFTTVLFYILAFVLVIAAFRVITARSPVTAVLHLILAFANAAMIWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VYVGAV+V FLF++MMLDI I+      + G      +G++   ++V    F++ S    
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRID----SLRDGLKTYLPLGLVIGVVLVLEMAFVLGSTWYG 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            G  + +    NN   +G+V+YTQY Y +E+   +LL+ M+ AI L LR RRD K  D  
Sbjct: 117 AGPQAPVAGDYNNARALGEVMYTQYVYAIEVGAALLLVGMVAAIALTLRRRRDAKYNDPV 176

Query: 178 KQLESNPDNSIVMVKVKS 195
             +     +   MVK+ +
Sbjct: 177 AAVRVRAKDRFRMVKMTA 194


>gi|126695328|ref|YP_001090215.1| NADH dehydrogenase subunit 6 [Oscarella carmela]
 gi|317097411|ref|YP_004123616.1| NADH dehydrogenase subunit 6 [Oscarella malakhovi]
 gi|116876184|gb|ABK30948.1| NADH dehydrogenase subunit 6 [Oscarella carmela]
 gi|312162788|gb|ADO51545.1| NADH dehydrogenase subunit 6 [Oscarella malakhovi]
          Length = 197

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 112/186 (60%), Gaps = 14/186 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+   IIS  +V++  NPI+SVF LI  F+ A+ LF+LLG +F+A+I L+VYVGA+ 
Sbjct: 5   FYIFALGIIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVC---ASNFMVFSAEGELSR 123
           + FLF+IMML++ D+E          +GS    +L  E+++    A+ +     + E  R
Sbjct: 65  ILFLFVIMMLNLTDLEGGGDMSNYIPIGSIIGVLLLFEVLIMGREATGYNYRDIDHECLR 124

Query: 124 ----------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                      + K +N+E +G++LYT Y Y   I+ FILL++MIGAIVL      ++KR
Sbjct: 125 GGVNAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELKR 184

Query: 174 QDISKQ 179
           QD+  Q
Sbjct: 185 QDLFTQ 190


>gi|317097235|ref|YP_004123364.1| NADH dehydrogenase subunit 6 [Plakortis simplex]
 gi|308912757|gb|ADO51513.1| NADH dehydrogenase subunit 6 [Plakortis simplex]
          Length = 197

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 14/190 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-------FFIGILAAELIVCA------SNFM 113
           + FLF+IMML++ D+E          +GS       F I I+  E IV +      +NFM
Sbjct: 65  ILFLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNGDTDYANFM 124

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++S  + K +N+E +G+VLYT Y Y   ++ FILL++MIGAIVL      ++KR
Sbjct: 125 DVLDFSDVSLEIIKFSNIEALGRVLYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184

Query: 174 QDISKQLESN 183
           QD+  Q+  N
Sbjct: 185 QDLFIQISRN 194


>gi|237748882|ref|ZP_04579362.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229380244|gb|EEO30335.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 211

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 118/199 (59%), Gaps = 8/199 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY+F  + ++++  V+T R+P+++V  L+ +F   A +++LL AEF+A+I L+
Sbjct: 4   MQLTNVLFYVFGAIMVLAALRVITSRHPVHAVLYLVLSFFTGAAIWILLKAEFLALILLL 63

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VYVGAV+V FLF++MM+D+D+   +   ++  + +  +G+     IV   + ++F     
Sbjct: 64  VYVGAVMVLFLFVVMMMDLDLTELKRAARKNMISATIVGV----AIVLEMSAVLFRGFWM 119

Query: 118 -EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +  + +   K      IGK L+T Y + +EI+  ILL+++I A+ L  R R D K    
Sbjct: 120 IDSHVPKSASKIGLTAEIGKALFTDYLFNVEIAAIILLVALIAAVTLTFRKRTDAKYTSA 179

Query: 177 SKQLESNPDNSIVMVKVKS 195
           +K +    ++ I +V++K+
Sbjct: 180 NKAIHVRAEDRIRIVEMKA 198


>gi|164421121|ref|YP_001648416.1| NADH dehydrogenase subunit 6 [Cinachyrella kuekenthali]
 gi|158938903|gb|ABW83832.1| NADH dehydrogenase subunit 6 [Cinachyrella kuekenthali]
          Length = 179

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 111/174 (63%), Gaps = 7/174 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   +IS  +V++  NP++SV  L+ AF+ AAGLF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYLFALSIVISGVMVISALNPVHSVLWLVVAFIGAAGLFILLEVDFLALILLIVYVGAIA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGS-FFIGIL-AAELIVCASNFMVFSAEGELSRLV 125
           + FLF+IMML  ++   E   +  +L + F IG++  +E+++  +     S   + +   
Sbjct: 65  ILFLFVIMML--NLTGLEGTDRSNYLPTGFIIGVVFLSEVLILQTR---ISMGVDPNWNF 119

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            +  N+E +G+VLYT Y Y   ++ FILL++M+GAIVL    +  +KRQDI  Q
Sbjct: 120 MEAPNIEVLGRVLYTNYCYLFILASFILLVAMMGAIVLTHDTKIRVKRQDIFLQ 173


>gi|317134340|ref|YP_004123126.1| NADH dehydrogenase subunit 6 [Oscarella microlobata]
 gi|308912655|gb|ADO51418.1| NADH dehydrogenase subunit 6 [Oscarella microlobata]
          Length = 197

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 14/186 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+   IIS  +V++  NPI+SVF LI  F+ A+ LF+LLG +F+A+I L+VYVG + 
Sbjct: 5   FYMFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGXIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119
           + FLF+IMML++ D+E          +GS    +L  E+++       +S          
Sbjct: 65  ILFLFVIMMLNLTDLEGGGDMSNYIPIGSVIGVLLLFEVLIMGREATAYSYRDIDHECLK 124

Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 + S  + K +N+E +G+VLYT Y Y   I+ FILL++MIGAIVL      ++KR
Sbjct: 125 GGVDAWDTSIEIIKSSNIEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHELGAELKR 184

Query: 174 QDISKQ 179
           QD+  Q
Sbjct: 185 QDLFIQ 190


>gi|253807608|gb|ACT36186.1| NADH dehydrogenase subunit 6 [Helicosporidium sp. ex Simulium
           jonesi]
          Length = 207

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 30/199 (15%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FY+F+   ++S   V+  RNP+YSV  LI  F NA+GL +LLG +F AMI LVVYVG
Sbjct: 2   DLLFYIFASSLLLSGVFVIQSRNPVYSVLFLILGFFNASGLLVLLGLDFFAMIFLVVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKR--------GFLGSFFIGILAAELIVC-------- 108
           A+ V FLF++MML+I +E    +K R        GFL  F + IL    I+         
Sbjct: 62  AIAVLFLFVVMMLNIKVEEFHEKKLRYLPVGGILGFLFLFEVLILTNHDIISLVPYELNT 121

Query: 109 --------ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
                    +NF+ +S+    S      N +  +G ++YT Y Y   ++  ILL++MIGA
Sbjct: 122 SYLKDLFNQTNFIDWSSHYSTS------NTIHALGNIIYTYYFYFFLMASLILLVAMIGA 175

Query: 161 IVLMLRHRRDIKRQDISKQ 179
           IVL ++    +K+Q +  Q
Sbjct: 176 IVLTMQKNLQVKKQQVYLQ 194


>gi|91208862|ref|YP_539023.1| NADH dehydrogenase subunit 6 [Physcomitrella patens]
 gi|90991402|dbj|BAE93094.1| NADH dehydrogenase subunit 6 [Physcomitrella patens]
          Length = 201

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 114/200 (57%), Gaps = 23/200 (11%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F +FS +A++SS +V+  +NP++SV   I  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFSVFSSIALVSSVMVIRAKNPVHSVLFFILVFFNTSGLLVLLGLDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKR----GFLGSFF------------IGILAAELIVC 108
           + V FLF++MML+I I E+ E   +     G +G  F            I IL  +L   
Sbjct: 62  IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGVIFLLEIFFIVDNDYIPILPTKL--- 118

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           ++ ++ ++   E  +      N+E +G +LYT Y     +S  ILL++MIGAIVL +   
Sbjct: 119 STTYLTYTVYAEKIQ---SWTNLETLGNLLYTTYFVLFLVSSLILLVAMIGAIVLTMHKT 175

Query: 169 RDIKRQDISKQLESNPDNSI 188
             +KRQD+ +Q   +  N+I
Sbjct: 176 TQVKRQDVFRQNAIDFKNTI 195


>gi|148361093|ref|YP_001252300.1| NADH dehydrogenase I subunit J [Legionella pneumophila str. Corby]
 gi|148282866|gb|ABQ56954.1| NADH dehydrogenase I, J subunit [Legionella pneumophila str. Corby]
          Length = 219

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 22/211 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+ + ++S+ +V++  NP+  V  L+  F  +A L++L  AEF+A+I ++VYVGAV+
Sbjct: 10  FYIFALLTVLSALMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVGAVM 69

Query: 68  VFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVC----------------- 108
             FLF++MML+IDIE  +    K   F G   + +L   L+V                  
Sbjct: 70  TLFLFVVMMLNIDIESMKSHLIKYLPF-GLIIVALLTGLLMVAIPKDIFKNSVQIQEKPL 128

Query: 109 --ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +S  M  S + EL       +N E +G VLYT Y    EI+  ILL++++ AI L+ R
Sbjct: 129 SVSSQLMDLSTQDELVPPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLVHR 188

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
                KRQDI++Q+ +     + ++ +KS K
Sbjct: 189 GAIRSKRQDITQQIMTRRAERVKLISMKSEK 219


>gi|54298763|ref|YP_125132.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str.
           Paris]
 gi|296108423|ref|YP_003620124.1| NADH dehydrogenase I chain J [Legionella pneumophila 2300/99 Alcoy]
 gi|53752548|emb|CAH13980.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str.
           Paris]
 gi|295650325|gb|ADG26172.1| NADH dehydrogenase I chain J [Legionella pneumophila 2300/99 Alcoy]
          Length = 219

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 22/211 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+ + ++S+ +V++  NP+  V  L+  F  +A L++L  AEF+A+I ++VYVGAV+
Sbjct: 10  FYIFALLTVLSALMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVGAVM 69

Query: 68  VFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVC----------------- 108
             FLF++MML+IDIE  +    K   F G   + +L   L+V                  
Sbjct: 70  TLFLFVVMMLNIDIESMKSHLIKYLPF-GLIIVALLTGLLMVAIPKDLFKNSVQIQEKPL 128

Query: 109 --ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +S  M  S + EL       +N E +G VLYT Y    EI+  ILL++++ AI L+ R
Sbjct: 129 SVSSQLMDLSTQDELVPPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLVHR 188

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
                KRQDI++Q+ +     + ++ +KS K
Sbjct: 189 GAIRSKRQDITQQIMTRRAERVKLISMKSEK 219


>gi|114330934|ref|YP_747156.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosomonas
           eutropha C91]
 gi|114307948|gb|ABI59191.1| NADH dehydrogenase subunit J [Nitrosomonas eutropha C91]
          Length = 201

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 127/204 (62%), Gaps = 12/204 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ Q   FY  + + II +  V+T+RNP+YSV  L+ AFV ++GL++LL AEF+A+  +V
Sbjct: 1   MIFQDFVFYSLASVVIICALGVITLRNPVYSVLLLVLAFVTSSGLWILLEAEFLAIALVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++    + + GF   F  G + A  I+     MV  ++  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLD----QMREGFWKWFPFGAILA-FIMTVEMSMVLMSKQF 115

Query: 121 LSRLV----FKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
            S ++    +K    +N + +G+++YT+Y Y  E++  ILL++M+ AI + LRHR D K 
Sbjct: 116 SSEIIQTPEYKSVDYSNTKELGRLIYTEYVYVFELAAVILLVAMVAAIAITLRHRTDKKS 175

Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197
            + S+Q+  + +  + ++ + + K
Sbjct: 176 SNASRQIAVSRNERLKVISMPAEK 199


>gi|164420963|ref|YP_001648530.1| NADH dehydrogenase subunit 6 [Callyspongia plicifera]
 gi|158668102|gb|ABW76564.1| NADH dehydrogenase subunit 6 [Callyspongia plicifera]
          Length = 183

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 113/185 (61%), Gaps = 11/185 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ LFF +F+F AIIS F V+TV +P+ SV  LI  F++A+ LF+LL  EF+A I L+VY
Sbjct: 1   MEGLFF-IFAFGAIISGFKVITVFSPVASVLWLIMTFISASALFILLEVEFIAFIFLIVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGA+ + FLF+IMML++   V        F     IG++    I+    F+  + +G   
Sbjct: 60  VGAIAILFLFVIMMLNLTEMVIFSNAANYFSAGLIIGVVFLFEIL---TFLKGTIDGGRM 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDI--- 176
           +  LV    N+E +G+VLYT Y Y   IS FILL++MIGAI+L   H  +D K QDI   
Sbjct: 117 VQYLVVPNPNIEVLGRVLYTDYYYLFIISSFILLVAMIGAIILTHDHIIQDRKGQDIFVQ 176

Query: 177 -SKQL 180
            S+QL
Sbjct: 177 TSRQL 181


>gi|253998392|ref|YP_003050455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus
           sp. SIP3-4]
 gi|313200469|ref|YP_004039127.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus
           sp. MP688]
 gi|253985071|gb|ACT49928.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus
           sp. SIP3-4]
 gi|312439785|gb|ADQ83891.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus
           sp. MP688]
          Length = 213

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 113/195 (57%), Gaps = 12/195 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ + + + +   V+T RNP+++   L+ AF  AAG++LLL AEF+A+  ++VYVGAV+
Sbjct: 8   FYVLAAILLFAGLRVITSRNPVHAALHLVLAFFTAAGIWLLLEAEFLAIALVLVYVGAVM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-------LAAELIVCASNFMVFSAEGE 120
           V FLF++MMLDI+++    + + GF  +  I +       L   +I+ + +F V      
Sbjct: 68  VLFLFVVMMLDINLD----KLREGFWEALPIALPVGILMTLEMVMILGSKHFGVDRVAAP 123

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                   N  E +G+ LYT Y  P E++  +LL++++ AI L LR R+D K  D ++Q+
Sbjct: 124 TPHPAGYSNTAE-LGRQLYTDYLLPFELASVVLLVAIVAAIALTLRDRKDSKFIDPAEQV 182

Query: 181 ESNPDNSIVMVKVKS 195
           +    + I MV + +
Sbjct: 183 KVKRADRIRMVSMPA 197


>gi|22550345|ref|NP_689370.1| NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum]
 gi|22417011|gb|AAM96610.1|AF494279_15 NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum]
          Length = 195

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 116/202 (57%), Gaps = 20/202 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F LFS +A++S+ +V++ +NP++S+  LI  F NA+ L +LLG +F AMI LVVYVG
Sbjct: 2   TILFCLFSSIALVSAGMVISAKNPVHSILFLILVFCNASALLVLLGLDFFAMIFLVVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRG----------FLGSFFIGI--LAAELIVCASNF 112
           A+ V FLF++MML+I+I        R           FL   F+ +  L    I+ A  +
Sbjct: 62  AIAVLFLFVVMMLNINIAEIHENVVRYLPIGGIIALIFLLEMFLVVEGLPTSTIIQAPAY 121

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +F+ + E         N+E +G +LYT Y     I   ILL++MIGAIVL +     +K
Sbjct: 122 TIFAEKIE------SLTNLEALGNLLYTTYFLLFLICSLILLIAMIGAIVLTMHKTTKVK 175

Query: 173 RQDISKQLESNPDNSIVMVKVK 194
           RQD+   L+++ D S  + K++
Sbjct: 176 RQDVF--LQNSVDFSTTIRKIR 195


>gi|327195240|ref|YP_004339022.1| NADH dehydrogenase subunit 6 [Coccomyxa sp. C-169]
 gi|325070736|gb|ADY75464.1| NADH dehydrogenase subunit 6 [Coccomyxa sp. C-169]
          Length = 205

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/193 (39%), Positives = 111/193 (57%), Gaps = 17/193 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLF Y FS +A+IS  +V+  RNP++SV  LI  F N+AGL +LLG EF AMI LVVY
Sbjct: 1   MTSLF-YFFSSLALISGVMVIQARNPVHSVLFLILVFFNSAGLLVLLGLEFFAMIFLVVY 59

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------- 114
           VGA+ V FLF++MML+I + E++E R +   +G     +   E+ +   N ++       
Sbjct: 60  VGAIAVLFLFVVMMLNIKLAEISEKRLRYLPIGGLLGMLFLGEIFLIVDNDLIPWLGSAH 119

Query: 115 FSAEGELSRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            S   ELS + +            +E +G ++YT Y Y   ++  ILL++MIGAIVL L 
Sbjct: 120 LSEWAELSAMEWTPWSHLAEGVTPLEGVGVIIYTYYFYFFLLASLILLVAMIGAIVLTLH 179

Query: 167 HRRDIKRQDISKQ 179
               +K Q++  Q
Sbjct: 180 KGVAVKHQEVFHQ 192


>gi|160872240|ref|ZP_02062372.1| NADH-quinone oxidoreductase, j subunit [Rickettsiella grylli]
 gi|159121039|gb|EDP46377.1| NADH-quinone oxidoreductase, j subunit [Rickettsiella grylli]
          Length = 198

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 6/197 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +QS  F++F+ + I S+ + +  RN + S   L+  F +AA L++LL AEF+ +I ++VY
Sbjct: 4   IQSCVFFIFAGVLITSALMTIISRNSVRSALFLVLTFFSAAALWILLEAEFLGLILILVY 63

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV+  FLF+IM L++D    +  K+ GF+      +L   +++      VF   G   
Sbjct: 64  VGAVMTLFLFVIMTLNLD----KTEKQYGFVPYLVWAVLGVLILLALLIDAVFPLTGNKI 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           L  L    +N + +G VLYTQYAYP EI+G +LL+ +I  I L  R +R  K      QL
Sbjct: 120 LIPLAANESNTQALGNVLYTQYAYPFEITGVLLLVGIIATIALSFREKRLNKAISPELQL 179

Query: 181 ESNPDNSIVMVKVKSGK 197
           +  P + + ++K+ + K
Sbjct: 180 KIKPSDRLRIIKMPTEK 196


>gi|63025141|ref|YP_232806.1| NADH dehydrogenase subunit 6 [Tethya actinia]
 gi|37961475|gb|AAP59065.1| NADH dehydrogenase subunit 6 [Tethya actinia]
          Length = 187

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 119/195 (61%), Gaps = 24/195 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++LF YLF+F  IIS  +V++  NP++S+  LI AF +AA LF+ L  +F+A I L+VY
Sbjct: 1   MEALF-YLFAFSVIISGIMVISALNPVHSILWLIVAFSSAAVLFIFLEVDFIAFIFLIVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGEL 121
           VGA+ + FLF+IMML++       +    ++   F IG      ++     ++FS+ G+L
Sbjct: 60  VGAIAILFLFVIMMLNLTDLADSFQDMSNYVPIGFLIG------VIIFFKVLIFSS-GKL 112

Query: 122 S---------RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           S         R  F  K +N+E +G+VLYT Y Y   ++ F+LL++MIGAIVL    R +
Sbjct: 113 SGLSGVINDFRWDFLEKVSNIEVLGRVLYTDYYYYFLLASFVLLVAMIGAIVLTHDLRVE 172

Query: 171 IKRQD----ISKQLE 181
           IKRQD    IS+QL+
Sbjct: 173 IKRQDIFIQISRQLK 187


>gi|220924014|ref|YP_002499316.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium nodulans ORS 2060]
 gi|219948621|gb|ACL59013.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium nodulans ORS 2060]
          Length = 206

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 118/195 (60%), Gaps = 13/195 (6%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + + S F+V+  RNP+ SV  LI AFVNAAGLF+L+GAEF+AMI +VVYVGAV V FLF+
Sbjct: 14  ITVASGFMVIASRNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVVVYVGAVAVLFLFV 73

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAE-----LIVCASNFMVFSAEGELSRLVFKG 128
           +MMLD+D   AE R+  GF     +G L        L++   ++ +     +    V  G
Sbjct: 74  VMMLDVDF--AELRQ--GFQDYLPVGALIGAVFLVELLLVVGSWAIDPGLVQAPLAVAPG 129

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
                N + +G VLYT Y +  +I+G +LL++MIGAIVL LR R  +KRQD++ Q     
Sbjct: 130 GDRITNTQALGLVLYTNYFFFFQIAGLVLLVAMIGAIVLTLRERPGVKRQDVTVQNARTQ 189

Query: 185 DNSIVMVKVKSGKGI 199
             ++ +  V + +G+
Sbjct: 190 AMAVELRNVPTRQGV 204


>gi|269958708|ref|YP_003328495.1| NADH dehydrogenase subunit J [Anaplasma centrale str. Israel]
 gi|269848537|gb|ACZ49181.1| NADH dehydrogenase subunit J [Anaplasma centrale str. Israel]
          Length = 200

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 120/200 (60%), Gaps = 11/200 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M S  F+ F+ +A++S+  V+ + NPIYSV SLI  F  ++ +F++LGAE VAM+ ++VY
Sbjct: 1   MLSFLFFCFAGVAVLSAVGVILLPNPIYSVLSLILTFFVSSAVFIMLGAELVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL---IVCASNFMVFSAEG 119
           VGAV V FLF++MMLDI    +  R + G +  + +G+    L    +  S F V SA  
Sbjct: 61  VGAVAVLFLFVVMMLDI----SRVRSRHGLVKRYPLGVACMLLFFGCMVYSIFHVKSATI 116

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML---RHRRDIKRQDI 176
             S  V    NV  IG  LYT+YAY  +++G +LL++ +G++VL+      R+ +K QD+
Sbjct: 117 GASEGVVGVGNVFLIGSRLYTEYAYAFQLAGVLLLIAGVGSLVLVAGGGDGRKSLK-QDV 175

Query: 177 SKQLESNPDNSIVMVKVKSG 196
           S+Q+  +    ++   V +G
Sbjct: 176 SQQIGRSSKIRLLSPGVGAG 195


>gi|317097125|ref|YP_004123257.1| NADH dehydrogenase subunit 6 [Plakina jani]
 gi|308912726|gb|ADO51484.1| NADH dehydrogenase subunit 6 [Plakina jani]
          Length = 197

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 14/190 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNMDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-------FFIGILAAELIVCAS------NFM 113
           + FLF+IMML++ D+E A        +GS       F I I+  E IV ++      N M
Sbjct: 65  ILFLFVIMMLNLTDLEGAGDMSNYIPIGSVMGVFLLFEIFIMGREAIVYSNRDTDYENLM 124

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++S  + K +N+E +G++LYT Y Y   ++ FILL++MIGAIVL      ++KR
Sbjct: 125 DVLDFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184

Query: 174 QDISKQLESN 183
           QD+  Q   N
Sbjct: 185 QDLFIQTSRN 194


>gi|317134283|ref|YP_004123166.1| NADH dehydrogenase subunit 6 [Pseudocorticium jarrei]
 gi|308912684|gb|ADO51445.1| NADH dehydrogenase subunit 6 [Pseudocorticium jarrei]
          Length = 197

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 108/186 (58%), Gaps = 14/186 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ +   IIS  +V++  NPI+SVF LI  F  A+ LF+LLG +F+A+I L+VYVGA+ 
Sbjct: 5   FYILALGVIISGIMVISALNPIHSVFWLIVVFSGASALFILLGIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119
           + FLF+IMML++ D+E          +GS    +L  E+++       +S          
Sbjct: 65  ILFLFVIMMLNLTDLEGDGDMSNYIPIGSIIGVLLLFEVLIMGREATAYSYRDIDHECLK 124

Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 + S  + K +N+E +G++LYT Y Y   I+ FILL++MIGAIVL      ++KR
Sbjct: 125 RGGDAWDASIEIIKTSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELKR 184

Query: 174 QDISKQ 179
           QD+  Q
Sbjct: 185 QDLFTQ 190


>gi|21231951|ref|NP_637868.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767922|ref|YP_242684.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113681|gb|AAM41792.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66573254|gb|AAY48664.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 219

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 121/207 (58%), Gaps = 20/207 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 5   TIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 64

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC------------ASNF 112
           AV+V FLF++MMLDID      R + G++    +G++ A  ++             A+ F
Sbjct: 65  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPVGVIVAVAMLAQMVTLIGVKARLATPF 120

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            V +A  + +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK
Sbjct: 121 PVDNAAAQAT----DTSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
            Q+ S+Q      + + MVK+   K +
Sbjct: 177 MQNASEQSRVRSTDRLRMVKMAVEKPV 203


>gi|29654730|ref|NP_820422.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA
           493]
 gi|153207244|ref|ZP_01946008.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154707308|ref|YP_001423966.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii Dugway
           5J108-111]
 gi|161831359|ref|YP_001597283.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA
           331]
 gi|165918812|ref|ZP_02218898.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA
           334]
 gi|212218222|ref|YP_002305009.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuK_Q154]
 gi|29541998|gb|AAO90936.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii RSA 493]
 gi|120576732|gb|EAX33356.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154356594|gb|ABS78056.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii Dugway
           5J108-111]
 gi|161763226|gb|ABX78868.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA
           331]
 gi|165917536|gb|EDR36140.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA
           334]
 gi|212012484|gb|ACJ19864.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuK_Q154]
          Length = 201

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 121/194 (62%), Gaps = 10/194 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++F+ + I ++ +V+  RNP+++V  L+ AF  +A L++++ AEF+A++ + VYVGAV+
Sbjct: 9   FFIFAAVLIAAAAMVIISRNPVHAVLFLVLAFFASAVLWMMMQAEFLALVLIFVYVGAVM 68

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS 122
             FLF++MML+ID+   + +  R    G +  +  IG++   +IV   +F V  A   L 
Sbjct: 69  TLFLFVVMMLNIDLSDLQQKFVRFLPFGLIAMALLIGMMV--VIVSPRHFTV--ATAHLP 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQLE 181
            +    +NV+ +G +LY  Y YP EI+  ILL+++I AI L    R+ + K Q + +QLE
Sbjct: 125 HVASNFSNVKAMGSLLYVDYFYPFEIAAVILLVAIIAAITLAFHGRKPNTKSQRVREQLE 184

Query: 182 SNPDNSIVMVKVKS 195
           +  +N + ++K+K+
Sbjct: 185 AKKENRLRVIKMKT 198


>gi|254496131|ref|ZP_05109030.1| NADH dehydrogenase I, J subunit [Legionella drancourtii LLAP12]
 gi|254354672|gb|EET13308.1| NADH dehydrogenase I, J subunit [Legionella drancourtii LLAP12]
          Length = 219

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 116/210 (55%), Gaps = 20/210 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+ + + S+ +V+T  NP+  V  L+  F  ++ L++L  AEF+A+I ++VYVGAV+
Sbjct: 10  FYVFAALTVGSALMVITQNNPVRCVLFLVLTFFTSSVLWILAEAEFLALILVLVYVGAVM 69

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVC--ASNFM----------- 113
             FLF++MML+IDIE      KR    G   + +L   L+V   A  F            
Sbjct: 70  TLFLFVVMMLNIDIESMRGHFKRYLPFGLILVALLTGLLMVATPAGTFKDNVERQQNAGQ 129

Query: 114 -VFSAEGELSRL-----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +   +G  S L     + + +N E +G VLYT Y    E++  +LL++++ AI L+ R 
Sbjct: 130 PILIQQGRTSELKTEPQLIEMSNTEALGMVLYTDYFLAFELAAVLLLVAIVSAITLVHRG 189

Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
            R  KRQDI +Q+ +  D  + +V +K+ K
Sbjct: 190 PRQSKRQDIKQQIMTRRDERVKLVSMKAEK 219


>gi|164421078|ref|YP_001648623.1| NADH dehydrogenase subunit 6 [Agelas schmidti]
 gi|158938993|gb|ABW83916.1| NADH dehydrogenase subunit 6 [Agelas schmidti]
          Length = 189

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 113/189 (59%), Gaps = 26/189 (13%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F+   I+S  +V++  NP++SVF LI AF +A+ LF+LL  EF+A++ L+VYVGA+ 
Sbjct: 6   FYFFALSVILSGIMVISAFNPVHSVFWLILAFTSASALFILLEVEFIALMFLIVYVGAIA 65

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-FFIGILAAELIVC-------ASNFMVFSAE 118
           + FLF+IMML++ D E+        FL + F IG++   LI C         +F  FS +
Sbjct: 66  ILFLFVIMMLNLMDFEMGGDMSN--FLATGFLIGVVF--LINCRVVSHLGRPSFYSFSWD 121

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD------IK 172
                 V K  N+E IG+VLYT Y Y   ++ FILL++M+GAIV  L H R+      +K
Sbjct: 122 -----FVGKTTNIEVIGRVLYTNYYYLFILASFILLVAMVGAIV--LTHDRESIVPSSLK 174

Query: 173 RQDISKQLE 181
           RQ I  Q+ 
Sbjct: 175 RQTIFAQIS 183


>gi|224824814|ref|ZP_03697921.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Lutiella
           nitroferrum 2002]
 gi|224603307|gb|EEG09483.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Lutiella
           nitroferrum 2002]
          Length = 214

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 105/178 (58%), Gaps = 10/178 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ S + I +   V+T +NP+++   L+ AF  +AG +LLL +EF+A+  ++
Sbjct: 1   MSFPTVVFYVLSAILIFAGLRVITAKNPVHAALYLVLAFFTSAGHWLLLESEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+ E    + + GF  +  +      ++V     ++ S E  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINFE----KLREGFWKNAPLAGTVGLIMVGEMVLILMSPEAS 116

Query: 121 L------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           L      + L    +N+  +G+++YT Y +P E++  +LL+ M+ AI L +R R+D K
Sbjct: 117 LGSYKGAAPLAADASNIRELGRLIYTTYLWPFELAAVVLLVGMVAAIALTMRKRKDTK 174


>gi|293603928|ref|ZP_06686343.1| NADH-quinone oxidoreductase subunit J [Achromobacter piechaudii
           ATCC 43553]
 gi|292817765|gb|EFF76831.1| NADH-quinone oxidoreductase subunit J [Achromobacter piechaudii
           ATCC 43553]
          Length = 218

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 120/198 (60%), Gaps = 7/198 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +I++F V+T R+P+ +V  LI AF NAA L++LLGAEF+A++ ++
Sbjct: 1   MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFSNAAMLWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---A 117
           VYVGAV+V FLF++MMLDI ++      ++G      +G++   ++V   +F++ S    
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRMDA----MRQGLKTYLPLGLVIGLVLVLEMSFVLGSTWYG 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            G  + +    NN   +G+ +YTQY Y +E+   +LL+ M+ A+ L LR RRD+K  D  
Sbjct: 117 AGPQAPVAGDYNNARALGEAMYTQYIYAVEVGAALLLVGMVAAVALTLRRRRDVKYNDPV 176

Query: 178 KQLESNPDNSIVMVKVKS 195
             +     +   MVK+ +
Sbjct: 177 AAVRVRSKDRFRMVKMPA 194


>gi|188991038|ref|YP_001903048.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732798|emb|CAP50992.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas
           campestris pv. campestris]
          Length = 219

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 121/207 (58%), Gaps = 20/207 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 5   TIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 64

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC------------ASNF 112
           AV+V FLF++MMLDID      R + G++    +G++ A  ++             A+ F
Sbjct: 65  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPVGVIVAVAMLAQMVTLIGVKGRLATPF 120

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            V +A  + +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK
Sbjct: 121 PVDNAAAQAA----DTSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199
            Q+ S+Q      + + MVK+   K +
Sbjct: 177 MQNASEQSRVRSTDRLRMVKMAVEKPV 203


>gi|313768501|ref|YP_004062177.1| NADH dehydrogenase subunit 6 [Gracilariophila oryzoides]
 gi|312844628|gb|ADR03193.1| NADH dehydrogenase subunit 6 [Gracilariophila oryzoides]
          Length = 202

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 22/205 (10%)

Query: 5   SLFFYL-FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            LF YL FS   I+SS +V+++ N ++S+  LI  F N AGL LLLGAEF++ + L+VYV
Sbjct: 4   DLFLYLLFSSFTIVSSLMVISLSNAVHSILFLILVFCNVAGLLLLLGAEFLSFMLLIVYV 63

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--------ILAAELIVCASNFMVF 115
           GA+ V FLF++MML++       +K    LG F IG        IL+ +L+   ++F  F
Sbjct: 64  GAIAVLFLFVVMMLNV-------KKTSTNLGFFAIGPVGLITFFILSNQLLGVFNDFDTF 116

Query: 116 SAEGE---LSRLVFKGNNVENI---GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             + +       + + NN+ NI   GKVLYT+Y++   +SG ILL++M+GAIVL +  R 
Sbjct: 117 GLKQKDLIWISWITEHNNITNIQAVGKVLYTKYSFLFILSGLILLVAMLGAIVLTMHQRT 176

Query: 170 DIKRQDISKQLESNPDNSIVMVKVK 194
           D+K+Q I  QL  N   SI  + ++
Sbjct: 177 DVKKQRIELQLSRNFGGSIKFINLR 201


>gi|114321110|ref|YP_742793.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227504|gb|ABI57303.1| NADH dehydrogenase subunit J [Alkalilimnicola ehrlichii MLHE-1]
          Length = 198

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 111/182 (60%), Gaps = 9/182 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+F+ + + ++ +V+T RNP++    L+ AF N+A L+++ GAEF+ +  +VVY
Sbjct: 1   MEQVIFYVFAAVLLFAATMVITARNPVHCALFLVLAFFNSAILWVMAGAEFLGIALVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-----A 117
           VGAV+V FLF++MMLDI   V     + GF      G L A L+      ++ S     A
Sbjct: 61  VGAVMVLFLFVVMMLDIGRSV----HQEGFTRYLPAGALVAVLMAVQLGLVLVSDHTGIA 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            G +  +    +N+  +G +LYT Y YP EI+G ILL+++I AIVL LR R   K QD++
Sbjct: 117 GGVIPEVPADVDNIRGLGGLLYTTYVYPFEIAGAILLVAIIAAIVLTLRRREGTKHQDVA 176

Query: 178 KQ 179
           KQ
Sbjct: 177 KQ 178


>gi|15836917|ref|NP_297605.1| NADH dehydrogenase subunit J [Xylella fastidiosa 9a5c]
 gi|9105137|gb|AAF83125.1|AE003884_10 NADH-ubiquinone oxidoreductase, NQO10 subunit [Xylella fastidiosa
           9a5c]
          Length = 222

 Score =  110 bits (275), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 120/204 (58%), Gaps = 20/204 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS +A+ ++  V++VR+P+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVGAV+
Sbjct: 9   FYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 68

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVC-------ASNFMVF 115
           V FLF++MMLDID      R + G++    +G+L A     +++V        A+ F V 
Sbjct: 69  VLFLFVVMMLDIDTS----RLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPFPVD 124

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +A  + +      +N+  +   L+T + +P E +  IL +++I A++L LR R  +K QD
Sbjct: 125 NAAAQAAH----TSNLTWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQD 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
            S+Q      + + +V + + + +
Sbjct: 181 PSQQTRVKAADRLRIVSMPTEEPV 204


>gi|300113274|ref|YP_003759849.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Nitrosococcus watsonii C-113]
 gi|299539211|gb|ADJ27528.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           watsonii C-113]
          Length = 201

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 124/203 (61%), Gaps = 13/203 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+F+ + + ++ +VVTVRNP+ +   L+ AF  +A ++LLL AEF+A++ ++VY
Sbjct: 1   MEKTLFYIFAAILLFAATMVVTVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119
           +GAV+V FLF++MMLD+++   +     GF     +G+L A LI      MV  ++    
Sbjct: 61  IGAVMVLFLFVVMMLDMNLAPLQ----EGFARYLPVGLLVAVLIAI-EMIMVLGSKNFGL 115

Query: 120 -ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            + +  V +G   NN + +G +LYT Y YP E++  ILL++++ AI L LR RR  K QD
Sbjct: 116 DQFTVPVARGADYNNTKELGNLLYTVYVYPFELASVILLVAIVAAIALALR-RRPSKTQD 174

Query: 176 ISKQLESNPDNSIVMVKVKSGKG 198
             +Q+   P + + +VK+ + K 
Sbjct: 175 PVQQVRVRPQDRVRLVKMTAEKS 197


>gi|212212191|ref|YP_002303127.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuG_Q212]
 gi|212010601|gb|ACJ17982.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuG_Q212]
          Length = 201

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 121/194 (62%), Gaps = 10/194 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++F+ + I ++ +V+  RNP+++V  L+ AF  +A L++++ AEF+A++ + VYVGAV+
Sbjct: 9   FFIFAAVLIAAAAMVIISRNPVHAVLFLVLAFFASAVLWMMMQAEFLALVLIFVYVGAVM 68

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS 122
             FLF++MML+ID+   + +  R    G +  +  IG++   +IV   +F V  A   L 
Sbjct: 69  TLFLFVVMMLNIDLSDLQQKFVRFLPFGLIAMALLIGMMV--VIVSPRHFTV--ATAHLP 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQLE 181
            +    +NV+ +G +LY  Y YP EI+  ILL+++I AI L    R+ + K Q + +QLE
Sbjct: 125 HVASNFSNVKAMGSLLYVDYFYPFEIAAVILLVAIIAAITLAFHGRKPNTKFQRVREQLE 184

Query: 182 SNPDNSIVMVKVKS 195
           +  +N + ++K+K+
Sbjct: 185 AKKENRLRVIKMKT 198


>gi|289065180|ref|YP_003434232.1| NADH dehydrogenase subunit 6 [Chattonella marina]
 gi|288871892|dbj|BAI70579.1| NADH dehydrogenase subunit 6 [Chattonella marina]
          Length = 203

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 112/204 (54%), Gaps = 21/204 (10%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           LFFYLFS + +IS+ +V+TV NP++SV  LI  FV +A + LLL  EF++++ +++YVGA
Sbjct: 5   LFFYLFSGLVLISATMVITVSNPVHSVLFLILGFVGSAAILLLLKVEFLSLMFVIIYVGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-----FSAEGE 120
           + V FLF++MMLDI +     +K    LG   +G ++   +     + +     FS+   
Sbjct: 65  IAVLFLFVVMMLDIKL-----KKSGASLGYTALGAISGLFLFFQFFYFIEKISPFSSSFL 119

Query: 121 LSRL-----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           L  L           + K  N+E +G+ LYT Y +   I G +LL+ MIG IVL L    
Sbjct: 120 LEELFSPYYFDWIDTIDKLTNMECLGQFLYTYYFFHFLIGGILLLVGMIGGIVLTLHVNY 179

Query: 170 DIKRQDISKQLESNPDNSIVMVKV 193
             K Q I KQL     N+I +  V
Sbjct: 180 KSKNQLICKQLSRQLKNAIFLTTV 203


>gi|313768527|ref|YP_004062202.1| NADH dehydrogenase subunit 6 [Gracilariopsis andersonii]
 gi|312844654|gb|ADR03218.1| NADH dehydrogenase subunit 6 [Gracilariopsis andersonii]
          Length = 202

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 124/206 (60%), Gaps = 22/206 (10%)

Query: 5   SLFFYL-FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            LF YL FS  AI++S +V+++ N ++SV  LI  F N AGL LLLGAEF++ + L+VYV
Sbjct: 4   DLFLYLLFSSFAILASLMVISLSNAVHSVLFLILVFCNVAGLLLLLGAEFLSFMLLIVYV 63

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--------ILAAELIVCASNFMVF 115
           GA+ V FLF++MML++       +K    LG F IG        IL  +L+   ++F  F
Sbjct: 64  GAIAVLFLFVVMMLNV-------KKTSTNLGFFAIGPIGLITFFILINQLLGIFNDFDTF 116

Query: 116 SAEGE----LSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             + +    +S +    N  N++ +GKVLYT+Y++   +SG ILL++M+GAIVL +  R 
Sbjct: 117 GLKQKDLIWISWITEHNNLTNIQAVGKVLYTKYSFLFILSGLILLVAMLGAIVLTMHQRT 176

Query: 170 DIKRQDISKQLESNPDNSIVMVKVKS 195
           D+K+Q I  QL  N   SI  + ++ 
Sbjct: 177 DVKKQKIELQLNRNFGGSIKFINLRK 202


>gi|164421042|ref|YP_001648672.1| NADH dehydrogenase subunit 6 [Plakortis angulospiculatus]
 gi|158939032|gb|ABW83952.1| NADH dehydrogenase subunit 6 [Plakortis angulospiculatus]
          Length = 197

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 14/190 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAITLAILVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119
           + FLF+IMML++ D+E          +GS     L  E+ +     +V+S E        
Sbjct: 65  ILFLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNEDTDYTNLT 124

Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++S  + K +N+E +G++LYT Y Y   ++ FILL++MIGAIVL      ++KR
Sbjct: 125 DLLDSWDISIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184

Query: 174 QDISKQLESN 183
           QD+  Q   N
Sbjct: 185 QDLFIQTSRN 194


>gi|317097391|ref|YP_004123598.1| NADH dehydrogenase subunit 6 [Plakina crypta]
 gi|308912604|gb|ADO51370.1| NADH dehydrogenase subunit 6 [Plakina crypta]
          Length = 197

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 115/193 (59%), Gaps = 14/193 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAITLAVLVSGIMVISALNPIHSVFWLIAGFLGASALFILLNIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-------FFIGILAAELIVCAS------NFM 113
           + FLF+IMML++ D+E A        +GS       F   I+  E++V ++      N M
Sbjct: 65  ILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEXFIIGREVVVYSNRDSDYENLM 124

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++S  + K +N+E +G++LYT Y Y   ++ FILL++MIGAIVL      ++KR
Sbjct: 125 DVLYFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184

Query: 174 QDISKQLESNPDN 186
           QD+  Q+  N + 
Sbjct: 185 QDLFIQMSRNLEQ 197


>gi|328775205|gb|AEB39998.1| NADH dehydrogenase subunit 6 [Funaria hygrometrica]
          Length = 201

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 23/200 (11%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F +FS +A++SS +V+  +NP++SV   I  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFSVFSSIALVSSVMVIRAKNPVHSVLFFILVFFNTSGLLVLLGLDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKR----GFLGSFF------------IGILAAELIVC 108
           + V FLF++MML+I I E+ E   +     G +G  F            I IL  +L   
Sbjct: 62  IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGVIFLLEIFFIVDNDYIPILPTKL--- 118

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           ++ ++ ++   E  +      N+E +G +LYT Y     +S  ILL++MIGAIVL +   
Sbjct: 119 STTYLTYTVYAEKIQ---SWTNLETLGNLLYTTYFVLFLVSSLILLVAMIGAIVLTMHKT 175

Query: 169 RDIKRQDISKQLESNPDNSI 188
             +K QD+ +Q   +  N+I
Sbjct: 176 TQVKGQDVFRQNAIDFKNTI 195


>gi|307611650|emb|CBX01338.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila 130b]
          Length = 219

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 22/211 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+ + ++S+ +V++  NP+  V  L+  F  +A L++L  AEF+A+I ++VYVGAV+
Sbjct: 10  FYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWILAEAEFLALILILVYVGAVM 69

Query: 68  VFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVC----------------- 108
             FLF++MML+IDIE  +    K   F G   + +L   L+V                  
Sbjct: 70  TLFLFVVMMLNIDIESMKSHLIKYLPF-GLIIVALLTGLLMVAIPKDLFKNSVQTQEKPL 128

Query: 109 --ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
              S  M  S E  L       +N E +G VLYT Y    EI+  ILL++++ AI L+ R
Sbjct: 129 SVNSQLMDLSTEDGLVTPKNATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLVHR 188

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
                KRQDI++Q+ +     + ++ +KS K
Sbjct: 189 GAIRSKRQDITQQIMTRRAERVKLISMKSEK 219


>gi|311104667|ref|YP_003977520.1| NADH-quinone oxidoreductase subunit J [Achromobacter xylosoxidans
           A8]
 gi|310759356|gb|ADP14805.1| NADH-quinone oxidoreductase subunit J [Achromobacter xylosoxidans
           A8]
          Length = 216

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 112/178 (62%), Gaps = 7/178 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +I++F V+T R+P+ +V  LI AF NAA L++LLGAEF+A++ ++
Sbjct: 1   MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFSNAAMLWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---A 117
           VYVGAV+V FLF++MMLDI ++      ++G      +G++   ++V    F++ S    
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRMDA----LRQGMKTYLPLGLIIGLVMVLEMAFVLGSTWYG 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            G  + +    NN   +G+ +YTQY Y +E+   +LL+ M+ AI L LR RRD+K  D
Sbjct: 117 AGPQAPVAGDYNNARALGEAMYTQYVYAIEVGAALLLVGMVAAIALTLRRRRDVKYND 174


>gi|71906597|ref|YP_284184.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Dechloromonas aromatica RCB]
 gi|71846218|gb|AAZ45714.1| NADH dehydrogenase subunit J [Dechloromonas aromatica RCB]
          Length = 198

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 109/187 (58%), Gaps = 14/187 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q+  FY  S + + +S  V+T RNP+++   LI AF    G++ LL AEF+A+  ++
Sbjct: 1   MDFQTAVFYFLSAILVFASLRVITARNPVHAALHLILAFFTCGGIWALLQAEFLAIAIIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-------ILAAELIVCASNFM 113
           VYVGAV+V FLF++MMLDI+I+    R + GF     +G       ++   L++ +  F 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINID----RIREGFWNYLPLGALLGLLMVMEMGLVLGSKYFQ 116

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           V +AE  +   V   +N + IG ++++ Y YP E++  ILL+ MI AIVL  R  +  K 
Sbjct: 117 VPAAEAMVPAGV---SNTKAIGALMFSDYVYPFELASLILLVGMIAAIVLTYRGPKKSKY 173

Query: 174 QDISKQL 180
            + ++Q+
Sbjct: 174 TNPNQQV 180


>gi|152979954|ref|YP_001353161.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille]
 gi|151280031|gb|ABR88441.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille]
          Length = 213

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 115/202 (56%), Gaps = 8/202 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++++  V+T  NP+++   L+ +F +AA L++LL AEF++++ ++
Sbjct: 1   MEFTTVLFYVFSAILVLAAIRVITESNPVHAALFLVLSFCSAAALWMLLKAEFLSIVLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----S 116
           VYVGAV+V FLF++MM+DI +     + + GF G   +      +IV     ++F     
Sbjct: 61  VYVGAVMVLFLFVVMMVDIKLT----KLREGFWGYLPLAATIGVVIVLEMALVLFRGFWR 116

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           +  ++  +     N + +GK++YT Y Y  EI+  +LL+ MI A+ L +R R+D K    
Sbjct: 117 SHTQVPEVSANIGNAKELGKLIYTDYLYAFEIAAVLLLVGMIAAVALTMRKRKDSKYFAP 176

Query: 177 SKQLESNPDNSIVMVKVKSGKG 198
              +     + + +VK+K+   
Sbjct: 177 GDAVRVKASDRLRVVKMKADSA 198


>gi|164421028|ref|YP_001648479.1| NADH dehydrogenase subunit 6 [Aplysina fulva]
 gi|158668077|gb|ABW76540.1| NADH dehydrogenase subunit 6 [Aplysina fulva]
          Length = 190

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 109/190 (57%), Gaps = 14/190 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ LFF LF    + S  +V++  NP++SV  LI AF NA+ LF+LL  EF+A+I L++Y
Sbjct: 1   MEGLFF-LFGVNVLFSGIMVISALNPVHSVLWLIVAFTNASALFILLNVEFIALIFLIIY 59

Query: 63  VGAVIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-------V 114
           VGA+ + FLF+IMML++ D+  +E       L    IGI+    I    N         +
Sbjct: 60  VGAIAILFLFVIMMLNLADLGGSEDMSNY-LLAGLIIGIVFLFEIWIWQNHQETPPMAFI 118

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +SA            N+E IG++LYT+  Y   ++ F+LL++MIGAIVL      +IKRQ
Sbjct: 119 YSAGINYWDYTAAYTNIEIIGRILYTELYYLFIVASFVLLVAMIGAIVLTHDMGTEIKRQ 178

Query: 175 DI----SKQL 180
           DI    S+QL
Sbjct: 179 DIFIQTSRQL 188


>gi|52842978|ref|YP_096777.1| NADH dehydrogenase I, J subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630089|gb|AAU28830.1| NADH dehydrogenase I, J subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 219

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 22/211 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+ + ++S+ +V++  NP+  V  L+  F  +A L++L  AEF+A+I ++VYVGAV+
Sbjct: 10  FYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVGAVM 69

Query: 68  VFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVC----------------- 108
             FLF++MML+IDIE  +    K   F G   + +L   L+V                  
Sbjct: 70  TLFLFVVMMLNIDIESMKSHLIKYLPF-GLIIVALLTGLLMVAIPKDLFKNSVQTQEKPL 128

Query: 109 --ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
              S  M  S E  L       +N E +G VLYT Y    EI+  ILL++++ AI L+ R
Sbjct: 129 SVNSQLMDLSTEDGLVTPEKATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLVHR 188

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
                KRQDI++Q+ +     + ++ +KS K
Sbjct: 189 GAIRSKRQDITQQIMTRRAERVKLISMKSEK 219


>gi|319779207|ref|YP_004130120.1| NADH-ubiquinone oxidoreductase chain J [Taylorella equigenitalis
           MCE9]
 gi|317109231|gb|ADU91977.1| NADH-ubiquinone oxidoreductase chain J [Taylorella equigenitalis
           MCE9]
          Length = 263

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 112/198 (56%), Gaps = 7/198 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FYL + + + +   VV  R+P+  V  LI AF NA+ L++L+GAEF+ ++ ++
Sbjct: 1   MTFTDILFYLLAIVLLYAGVRVVLARHPVVGVLHLILAFFNASMLWILIGAEFLGLLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           +YVGAV+V FLF++MM+D+  E      ++ F     IG++   ++V    F++ SA   
Sbjct: 61  IYVGAVMVLFLFVVMMVDVVPETL----RKDFRTYLPIGLVVGGVMVSEIAFILGSAYLD 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
                      NN   +G  +Y++Y+YP+++   ILL+ MI AI L LR R++ K   +S
Sbjct: 117 SSSPKSWPDTYNNTLALGIEMYSKYSYPIQVGALILLVGMIAAIALTLRERKNRKYVLVS 176

Query: 178 KQLESNPDNSIVMVKVKS 195
            QL+    + + +V + S
Sbjct: 177 DQLKVEAKDRVRLVSLPS 194


>gi|77166014|ref|YP_344539.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Nitrosococcus oceani ATCC 19707]
 gi|254436307|ref|ZP_05049813.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Nitrosococcus oceani AFC27]
 gi|76884328|gb|ABA59009.1| NADH dehydrogenase subunit J [Nitrosococcus oceani ATCC 19707]
 gi|207087997|gb|EDZ65270.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Nitrosococcus oceani AFC27]
          Length = 201

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 5/199 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+F+ + + ++ +VVTVRNP+ +   L+ AF  +A ++LLL AEF+A++ ++VY
Sbjct: 1   MEKTLFYIFAAILLFAATMVVTVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-AAELIVC--ASNFMVFSAEG 119
           +GAV+V FLF++MMLD+++   +    R     F + +L A E+I+   + NF +     
Sbjct: 61  IGAVMVLFLFVVMMLDMNLAPLQEGFARYLPVGFLVAVLIAIEMIIVLGSKNFGLDQFTA 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             SR     +N + +G +LYT Y YP E++  ILL++++ AI L LR RR  K QD ++Q
Sbjct: 121 PASRGA-DYSNTKELGNLLYTVYVYPFELASVILLVAIVAAIALALR-RRPSKAQDPAQQ 178

Query: 180 LESNPDNSIVMVKVKSGKG 198
           +   P + + +VK+ + K 
Sbjct: 179 VRVRPQDRVRLVKMAAEKS 197


>gi|217331580|gb|ACK38306.1| NADH dehydrogenase subunit 6 [Isoetes engelmannii]
 gi|314908352|gb|ADT62123.1| NADH dehydrogenase subunit 6 [Isoetes engelmannii]
          Length = 208

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 112/196 (57%), Gaps = 10/196 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F +FS +A++S  +V+  +NP++SV  LI  F + +GL L LG +F +MI LVVYVGA
Sbjct: 2   ILFSVFSSIALVSGVMVMRAKNPVHSVLFLILVFCHTSGLLLWLGLDFFSMILLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASN--FMVFSAE-GEL 121
           + V FLF++MML+I I E+ E   +   +G     IL  E+ +   N    + S     L
Sbjct: 62  IAVLFLFVVMMLNIKIAEIHEDVLRYLPVGGIIGFILGWEMFLIVDNDYIPILSTNMNTL 121

Query: 122 SRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQD 175
           S  V  G      N+E IG +LYT Y     +S  ILL++MIGAIV+ + HR   +KRQ+
Sbjct: 122 SYTVCAGKIQSWTNLETIGNLLYTIYLVWFLVSSLILLVAMIGAIVITMEHRTTRVKRQN 181

Query: 176 ISKQLESNPDNSIVMV 191
            S   E +  +S V V
Sbjct: 182 WSFLEEPSKRSSQVRV 197


>gi|54295609|ref|YP_128024.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str.
           Lens]
 gi|53755441|emb|CAH16937.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str.
           Lens]
          Length = 219

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 114/210 (54%), Gaps = 20/210 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+ + ++S+ +V++  NP+  V  L+  F  +A L++L  AEF+A+I ++VYVGAV+
Sbjct: 10  FYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWILAEAEFLALILILVYVGAVM 69

Query: 68  VFFLFIIMMLDIDIEVAEPR--KKRGF---LGSFFIGILAAEL---------------IV 107
             FLF++MML+IDIE  +    K   F   + + F G+L   +               + 
Sbjct: 70  TLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALFTGLLMVAIPKDLFKNSVQTQEKPLS 129

Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             S  M  S E  L       +N E +G VLYT Y    EI+  ILL++++ AI L+ R 
Sbjct: 130 VNSQLMDLSTEDGLVTPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLVHRG 189

Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
               KRQDI++Q+ +     + ++ +KS K
Sbjct: 190 AIRSKRQDITQQIMTRRAERVKLISMKSEK 219


>gi|317134245|ref|YP_004123489.1| NADH dehydrogenase subunit 6 [Halisarca sp. DVL-2010]
 gi|315141536|gb|ADT81740.1| NADH dehydrogenase subunit 6 [Halisarca sp. DVL-2010]
          Length = 191

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 110/188 (58%), Gaps = 19/188 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   I S  +V++  NP++SV  LIFAF NA+ LF+LL  EF+A I L+VYVGA+ 
Sbjct: 5   FYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           + FLF+IMML+       I+ +++        +G+ F+     E+++  ++   +    +
Sbjct: 65  ILFLFVIMMLNLTDFGYNINSDMSNYLPAGLVIGTVFL----FEILIWHNHSEGYYLSSD 120

Query: 121 L----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                   V    N+E IG+VLYT + Y   ++ FILL++MIGAIVL      DI+RQDI
Sbjct: 121 CVPIYYNCVISSPNIEIIGRVLYTDFYYLFLLASFILLVAMIGAIVLTHEINIDIRRQDI 180

Query: 177 ----SKQL 180
               S+QL
Sbjct: 181 FIQTSRQL 188


>gi|11466641|ref|NP_066324.1| NADH dehydrogenase subunit 6 [Malawimonas jakobiformis]
 gi|10178679|gb|AAG13691.1|AF295546_17 NADH dehydrogenase subunit 6 [Malawimonas jakobiformis]
          Length = 190

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 18/194 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY +S + I+S+ +V+ V NPI+S+  LI  F+N +GL +LL  EF+A+  ++VY
Sbjct: 1   MSEILFYFYSILTIVSAIMVIAVTNPIHSILFLILVFINVSGLLILLEVEFLAITLIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASN---------- 111
           VGA+ V FL + MM +I I V+         +G     I   E+I+C +N          
Sbjct: 61  VGAIAVLFLSVTMMPNIKIVVSNLNLLHYIPIGGIITIIFLLEMIICFNNDFISIFNLNN 120

Query: 112 ---FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              F       EL  +     N+E+IG ++YT Y     ISGFILLL+M GAIVL L   
Sbjct: 121 INDFDFIQWTNELKHMT----NIESIGILIYTHYYDLFIISGFILLLAMNGAIVLTLHIN 176

Query: 169 RDIKRQDISKQLES 182
            +IKRQ I  Q+ S
Sbjct: 177 NNIKRQQIFFQIYS 190


>gi|317097475|ref|YP_004123691.1| NADH dehydrogenase subunit 6 [Plakina sp. DVL-2010]
 gi|308912635|gb|ADO51399.1| NADH dehydrogenase subunit 6 [Plakina sp. DVL-2010]
          Length = 197

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 14/190 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119
           + FLF+IMML++ D+E A        +GS     L  E+ +     +V+S          
Sbjct: 65  ILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEIFIIGREAIVYSNRDSDYENLT 124

Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++S  + K +N+E +G++LYT Y Y   ++ FILL++MIGAIVL      ++KR
Sbjct: 125 DVLGFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184

Query: 174 QDISKQLESN 183
           QD+  Q   N
Sbjct: 185 QDLFIQTSRN 194


>gi|124286766|ref|YP_001023660.1| NADH dehydrogenase subunit 6 [Savalia savaglia]
 gi|110083985|gb|ABG49162.1| NADH dehydrogenase subunit 6 [Savalia savaglia]
          Length = 221

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 42/224 (18%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FY  SF AI S  +V++  NP++SVF L+ AF +++ LF+LLGA+F+A++ L+VY
Sbjct: 1   MTWACFYTLSFGAIASGIMVISALNPVHSVFWLVVAFTSSSALFILLGADFIALMFLIVY 60

Query: 63  VGAVIVFFLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVC 108
           VGA+ + FLF+IMML++ D     P  + G              +G+ F   +A+  ++ 
Sbjct: 61  VGAIAILFLFVIMMLNLTDFP---PAYRLGGETDMTNYVPVGLAIGTLFFSEIASSWLIM 117

Query: 109 ASNFMV---FSA--EGELSRL----------------VFKGNNVENIGKVLYTQYAYPLE 147
             +  +   F A   G  S L                + K +N+E IG++LYT Y Y   
Sbjct: 118 GGHSALAGPFGAATSGHASALRPLELGGNWNLANPWFLIKCHNIEAIGRLLYTDYYYLFI 177

Query: 148 ISGFILLLSMIGAIVLMLRHRRDI----KRQDISKQLESNPDNS 187
           ++ FILL++MIGAIVL      +I    K+QDI  Q+   P+ +
Sbjct: 178 LASFILLVAMIGAIVLTQEIGEEIGATAKKQDIFLQISRAPEGA 221


>gi|78485171|ref|YP_391096.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Thiomicrospira crunogena XCL-2]
 gi|78363457|gb|ABB41422.1| NADH dehydrogenase I chain J [Thiomicrospira crunogena XCL-2]
          Length = 211

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 117/213 (54%), Gaps = 28/213 (13%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +   FYL + +++ S+ +V++V+NP+ +   L+  F+  AG++L   AEF+ ++ ++
Sbjct: 1   MTFEQFIFYLLAGISVFSALMVISVKNPVKAALWLVLTFIATAGVWLTAQAEFLGLVLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115
           VYVGAV+V FLF++MMLDI++     + K GF     +G+LAA  I  A  ++V      
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLA----QLKEGFTRYLPLGVLAATAI-FALMYLVLGPERF 115

Query: 116 ---------SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                    SA GE S       N ++I   LYT + Y   ++  +LL+ ++ AI L LR
Sbjct: 116 GLEQFAAPQSAGGEYS-------NTKSIAVPLYTTHVYAFILAAVLLLVGIVAAITLTLR 168

Query: 167 HR--RDIKRQDISKQLESNPDNSIVMVKVKSGK 197
            R  +++  QDI KQ+     +   MVK+ + K
Sbjct: 169 RRPPKEVLYQDIDKQVRVQASDRFKMVKMDAVK 201


>gi|321401341|gb|ADW83096.1| NADH dehydrogenase subunit 6 [Pavlova lutheri]
          Length = 212

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/198 (39%), Positives = 116/198 (58%), Gaps = 21/198 (10%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           SL  +LFS  A++SS +V+T  NP++SVF+LIF FVN A + L+L  EF++++ LVVYVG
Sbjct: 6   SLIIFLFSSFALVSSAVVITATNPVHSVFALIFVFVNVASVLLVLRVEFISLLFLVVYVG 65

Query: 65  AVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAEL-IVCASNFMVFSA----E 118
           AV V FLF+IMML++ + E ++       LG     +   E+ ++   + + FS      
Sbjct: 66  AVAVLFLFVIMMLNVKLNEASDNSVSYLPLGLVLGVLFLLEVSLIITGDLLPFSGGFLYR 125

Query: 119 GELSRLVFKG---------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            E+S+ +F G               NN++ IG V+YT   +P  ++G +LLLSMIGAIVL
Sbjct: 126 SEISQNLFAGSPFSHLHLESVVAVPNNMQLIGSVVYTDLFFPFILAGLLLLLSMIGAIVL 185

Query: 164 MLRHRRDIKRQDISKQLE 181
            L       +QDI KQ+ 
Sbjct: 186 SLMKTSSALKQDIFKQVS 203


>gi|10802936|gb|AAG23684.1|AF288091_29 NADH dehydrogenase subunit 6 [Thraustochytrium aureum]
          Length = 204

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 118/204 (57%), Gaps = 12/204 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   F +FSF   +SSF V+ V  P+ +V SLIF+F NAAGL  +  AEF+A++ L+VY
Sbjct: 1   MEFFLFCVFSFGLCVSSFNVIFVNKPVNAVLSLIFSFCNAAGLLFMAEAEFIAILFLIVY 60

Query: 63  VGAVIVFFLFIIMMLDI-DIEVAEPRKKRG-----FLGSFFIGILAAELIVCASNFMVFS 116
           +GA+ V FLF+I+ML++ +I   E   +       F   FFI +   +L   +    +F 
Sbjct: 61  IGAIAVLFLFVIIMLNLKNIFFTEKFNESFPIILIFSLLFFIILFFNQLTFYSFEVTLFE 120

Query: 117 AEGELS--RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH----RRD 170
               +   +L+    N++  G+VLYT Y   L I+GFILL+++I +I+L        ++D
Sbjct: 121 LPSHIHWIKLIDSIGNIDLFGQVLYTYYFTYLLIAGFILLVAIIASIILTSNKSFLLKKD 180

Query: 171 IKRQDISKQLESNPDNSIVMVKVK 194
            K+Q I  QL  NP+ ++ ++K K
Sbjct: 181 FKKQLIFSQLSRNPNKAVFLIKKK 204


>gi|71275681|ref|ZP_00651966.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Dixon]
 gi|71897775|ref|ZP_00680001.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Ann-1]
 gi|170729498|ref|YP_001774931.1| NADH dehydrogenase subunit J [Xylella fastidiosa M12]
 gi|182680814|ref|YP_001828974.1| NADH dehydrogenase subunit J [Xylella fastidiosa M23]
 gi|71163572|gb|EAO13289.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Dixon]
 gi|71732330|gb|EAO34384.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Ann-1]
 gi|167964291|gb|ACA11301.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xylella fastidiosa
           M12]
 gi|182630924|gb|ACB91700.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xylella
           fastidiosa M23]
          Length = 221

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 119/204 (58%), Gaps = 20/204 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS + + ++  V++VR+P+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVGAV+
Sbjct: 8   FYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVC-------ASNFMVF 115
           V FLF++MMLDID      R + G++    +G+L A     +++V        A+ F V 
Sbjct: 68  VLFLFVVMMLDIDTS----RLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPFPVD 123

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +A  + +      +N+  +   L+T + +P E +  IL +++I A++L LR R  +K QD
Sbjct: 124 NAAAQAA----DTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQD 179

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
            S+Q      + + +V + + K I
Sbjct: 180 PSQQTRVKSADRLRIVSMPTEKPI 203


>gi|28198180|ref|NP_778494.1| NADH dehydrogenase subunit J [Xylella fastidiosa Temecula1]
 gi|28056250|gb|AAO28143.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xylella fastidiosa
           Temecula1]
          Length = 222

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 119/204 (58%), Gaps = 20/204 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS + + ++  V++VR+P+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVGAV+
Sbjct: 9   FYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 68

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVC-------ASNFMVF 115
           V FLF++MMLDID      R + G++    +G+L A     +++V        A+ F V 
Sbjct: 69  VLFLFVVMMLDIDTS----RLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPFPVD 124

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +A  + +      +N+  +   L+T + +P E +  IL +++I A++L LR R  +K QD
Sbjct: 125 NAAAQAA----DTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQD 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
            S+Q      + + +V + + K I
Sbjct: 181 PSQQTRVKSADRLRIVSMPTEKPI 204


>gi|307579281|gb|ADN63250.1| NADH dehydrogenase subunit J [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 229

 Score =  107 bits (268), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 119/204 (58%), Gaps = 20/204 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS + + ++  V++VR+P+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVGAV+
Sbjct: 16  FYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 75

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVC-------ASNFMVF 115
           V FLF++MMLDID      R + G++    +G+L A     +++V        A+ F V 
Sbjct: 76  VLFLFVVMMLDIDTS----RLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPFPVD 131

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +A  + +      +N+  +   L+T + +P E +  IL +++I A++L LR R  +K QD
Sbjct: 132 NAAAQAA----DTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQD 187

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
            S+Q      + + +V + + K I
Sbjct: 188 PSQQTRVKSADRLRIVSMPTEKPI 211


>gi|317401997|gb|EFV82597.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 216

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 111/178 (62%), Gaps = 7/178 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +I++F V+T R+P+ +V  LI AF NAA L++LLGAEF+A++ ++
Sbjct: 1   MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---A 117
           VYVGAV+V FLF++MMLDI ++      ++G      +G++   ++V    F++ S    
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRMDA----LRQGMKTYLPLGLVIGLVMVLEMAFVLGSTWYG 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            G  + +    NN   +G+ +YT Y Y +E+   +LL+ M+ AI L LR RRD+K  D
Sbjct: 117 AGPQAPVAGDYNNARALGEAMYTHYIYAIEVGAALLLVGMVAAIALTLRRRRDVKYND 174


>gi|317134294|ref|YP_004123149.1| NADH dehydrogenase subunit 6 [Plakina trilopha]
 gi|308912666|gb|ADO51428.1| NADH dehydrogenase subunit 6 [Plakina trilopha]
          Length = 197

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/190 (38%), Positives = 112/190 (58%), Gaps = 14/190 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-------FFIGILAAELIVCAS------NFM 113
           + FLF+IMML++ D+  A        +GS       F I I+  E IV ++      N M
Sbjct: 65  ILFLFVIMMLNLTDLGGAGDMSNYIPIGSVMGVFLLFEIFIMGREAIVYSNRDTDYENLM 124

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++S  + K +N+E +G++LYT Y Y   ++ FILL++MIGAIVL      ++KR
Sbjct: 125 DVLDFWDVSIEIIKFSNIEALGRILYTNYFYLFILASFILLVAMIGAIVLTHELGIELKR 184

Query: 174 QDISKQLESN 183
           QD+  Q   N
Sbjct: 185 QDLFIQTSRN 194


>gi|71897863|ref|ZP_00680089.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Ann-1]
 gi|71732418|gb|EAO34472.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Ann-1]
          Length = 221

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 117/204 (57%), Gaps = 20/204 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS +A+ ++  V++VR+P+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVGAV+
Sbjct: 8   FYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA------------SNFMVF 115
           V FLF++MMLDID      R + G++    +G+L A +++              + F V 
Sbjct: 68  VLFLFVVMMLDIDTS----RLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMVTPFPVD 123

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +A  + +      +N+  +   L+T + +P E +  IL +++I A++L LR R  +K QD
Sbjct: 124 NAAAQAA----DTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQD 179

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
             +Q      + + +V + + K I
Sbjct: 180 PGQQTRVKSADRLRIVSMPTEKPI 203


>gi|301353210|ref|YP_003795207.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae]
 gi|301353240|ref|YP_003795237.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae]
 gi|290573158|gb|ADD46345.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae]
 gi|290573188|gb|ADD46375.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae]
          Length = 197

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 117/199 (58%), Gaps = 13/199 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++FF LF+ + +IS  +VV+V N IYSV  LIF+F N   L LLLG +F+++I L++Y
Sbjct: 1   MSNIFFNLFASLLLISLIMVVSVNNAIYSVLFLIFSFFNVMCLLLLLGVDFISLIFLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAEG 119
           +GA+ V FLF+IMM+ +     E      F+  F   +L    I    N   FMVF  E 
Sbjct: 61  LGAITVLFLFVIMMIQLK---TEDFGNFKFIPVFCFVVLFIFFIDIFKNNDVFMVFLNEN 117

Query: 120 -ELSRL-----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             L+ +     +   +N+  IG++ YT +A    ISG ILL++MIGAI+L L+  + +++
Sbjct: 118 SNLNYMNWFLKIINIDNIRMIGQIAYTYFAVYFIISGIILLIAMIGAILLSLKKNQYVRK 177

Query: 174 -QDISKQLESNPDNSIVMV 191
            Q+ S+QL    +N+I  V
Sbjct: 178 WQNTSQQLSRCVENAIFFV 196


>gi|226939465|ref|YP_002794538.1| NuoJ [Laribacter hongkongensis HLHK9]
 gi|226714391|gb|ACO73529.1| NuoJ [Laribacter hongkongensis HLHK9]
          Length = 211

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 123/203 (60%), Gaps = 10/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY  S + + +   V+T +NP+++V  L+ AF  +AG +LL+ AEF+A+  ++
Sbjct: 1   MSFQLILFYALSVLLVYAGLRVITAKNPVHAVLHLVLAFFVSAGHWLLIEAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF-FIGILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLDI+ E    + + GF     F G++A  LI   +  +   A G
Sbjct: 61  VYVGAVMVLFLFVVMMLDINFE----KLREGFWKHLPFAGLVAVVLIAELAYVLTSPAAG 116

Query: 120 -----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                  + L    +NV+++G+ +YT Y YP E++  +LLL+++ AI L  R+R+D K  
Sbjct: 117 LSDMPSPAALAADYSNVKDLGRQIYTVYLYPFELAAVLLLLAIVAAIALTQRNRKDTKWV 176

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
           D + Q+ +  ++ + +VK+++ K
Sbjct: 177 DPAVQVMARREDRVRIVKMQAVK 199


>gi|332526756|ref|ZP_08402858.1| NADH-ubiquinone oxidoreductase, subunit J [Rubrivivax
           benzoatilyticus JA2]
 gi|332111159|gb|EGJ11191.1| NADH-ubiquinone oxidoreductase, subunit J [Rubrivivax
           benzoatilyticus JA2]
          Length = 210

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 118/203 (58%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +  FYLFS + + ++  V+T R+ ++ V  L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MNTTTALFYLFSAVLLFAALRVITARSTVHGVLYLVLAFFNAACIWMLLQAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115
           VYVGAV+V FLF++MMLDI+ E      + GF   F +  +   +I    + ++      
Sbjct: 61  VYVGAVMVLFLFVVMMLDINSESV----RTGFWKHFPLAGMVGAVIALEMSLVLLRGFQP 116

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   EL+    +  N   +G  LYT Y YPL+++  +LL++++ AI L LRHR+D +R D
Sbjct: 117 AQAPELTAQALEMGNTRLLGIELYTHYLYPLQLAAVLLLVAIVAAIALTLRHRKDSRRVD 176

Query: 176 ISKQLESNPDNSIVMVKVKSGKG 198
            +  +     + + +VKV + K 
Sbjct: 177 PAMAVRVKRADRVRLVKVPTVKA 199


>gi|164420992|ref|YP_001648613.1| NADH dehydrogenase subunit 6 [Halisarca dujardini]
 gi|158668146|gb|ABW76605.1| NADH dehydrogenase subunit 6 [Halisarca dujardini]
          Length = 196

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/196 (38%), Positives = 104/196 (53%), Gaps = 24/196 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   I S  +V++  NP++SV  LIFAF NA+ LF+LL  EF+A I L+VYVGA+ 
Sbjct: 5   FYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDIDIEV-------AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           + FLF+IMML++           A             IGI+    I+   N     +EG 
Sbjct: 65  ILFLFVIMMLNLTPNTGGEFGPNANSDMSNYLPAGLVIGIVFLFEILIWHN----HSEGY 120

Query: 121 ---------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                        V    N+E IG+VLYT + Y   ++ FILL++MIGAIVL      +I
Sbjct: 121 YLSSGCVPVYYNCVISSPNIEIIGRVLYTDFYYLFLLASFILLVAMIGAIVLTHDINTEI 180

Query: 172 KRQDI----SKQLESN 183
           + QDI    S+QL + 
Sbjct: 181 RXQDIFIQTSRQLWAT 196


>gi|164421155|ref|YP_001648557.1| NADH dehydrogenase subunit 6 [Chondrilla aff. nucula CHOND]
 gi|158668116|gb|ABW76577.1| NADH dehydrogenase subunit 6 [Chondrilla aff. nucula CHOND]
          Length = 191

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 105/188 (55%), Gaps = 19/188 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+   I S  +V++  NP++SV  LIFAF NA+ LF+LL  EF+A I L+VYVGA+ 
Sbjct: 5   FYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEGE----- 120
           + FLF+IMML++ D           +L     IGI+    I+   N     +EG      
Sbjct: 65  ILFLFVIMMLNLTDFGYNINSDMSNYLPAGLIIGIVFLFEILIWHN----HSEGYYLSSD 120

Query: 121 ----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                   V    N+E IG+VLYT + Y   ++ FIL ++MIGAIVL      +I+RQD+
Sbjct: 121 CVPIYYNCVIPSPNIEIIGRVLYTDFYYLFLLASFILXVAMIGAIVLTHEINIEIRRQDL 180

Query: 177 ----SKQL 180
               S+QL
Sbjct: 181 FIQTSRQL 188


>gi|289207902|ref|YP_003459968.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thioalkalivibrio sp. K90mix]
 gi|288943533|gb|ADC71232.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thioalkalivibrio sp. K90mix]
          Length = 217

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 116/202 (57%), Gaps = 12/202 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FYLF  + +  +  +++VRNP+++   L+  FV AA ++LL  AEF+ ++ ++
Sbjct: 1   MTFELILFYLFGAILLGGALAMISVRNPVHAALFLVLCFVAAAAVWLLAEAEFLGIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-----LAAELIVCASNFMVF 115
           VYVGAV+V FLF++MMLDI++     + + GF     +GI     +A  L+   + ++  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLA----KLREGFTEYLPVGIVVAVAMATVLVAVITRYITM 116

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                  R   +  N E +G +LYT+Y YP EI+  ILL+++I AI L +R R D K  D
Sbjct: 117 DVP---ERAGPEYANTEALGAILYTEYVYPFEIAAVILLVAIIAAISLTMRKRPDNKSID 173

Query: 176 ISKQLESNPDNSIVMVKVKSGK 197
             +Q+  + +  + MV + S K
Sbjct: 174 PGQQMAVSREGRVRMVSMASEK 195


>gi|329909996|ref|ZP_08275181.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546333|gb|EGF31352.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 221

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 125/200 (62%), Gaps = 10/200 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY FS + ++++  V+T RNP++S   L+ +F +AA ++LLL AEF+A++ ++
Sbjct: 1   MEFKTALFYAFSAILVMAALKVITDRNPVHSALFLVLSFFSAAAIWLLLQAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG----SFFIGILAAELIVCASNFMVFS 116
           VYVGAV+V FLF++MMLDI+++    + + GF G    + FIG+L   L + A     F 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVD----KMREGFWGYLPFAAFIGVLIV-LEMSAVLLQAFW 115

Query: 117 A-EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           A + ++          + +GK++YT+Y +  EI+  ILLL+++ A+ L LR R+D K  D
Sbjct: 116 APDAQVPSAASTIGTTKELGKLIYTEYVFAFEIAAAILLLAIVAAVALTLRKRKDSKYFD 175

Query: 176 ISKQLESNPDNSIVMVKVKS 195
            ++ ++    + + +VK+KS
Sbjct: 176 PAEAVKVKASDRVRIVKMKS 195


>gi|194366595|ref|YP_002029205.1| NADH dehydrogenase subunit J [Stenotrophomonas maltophilia R551-3]
 gi|194349399|gb|ACF52522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Stenotrophomonas maltophilia R551-3]
          Length = 218

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 113/195 (57%), Gaps = 16/195 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++F+  A +S+  V++VRNP+++V  L+  F + A ++LL+GAEF+ +  ++VYVGAV+
Sbjct: 8   FWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVLVYVGAVM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR-GFLGSFFIGILAAELIVCASNFMVFSAEGE------ 120
           V FLF++MMLDID     P K R G++    +G++ A + +     ++   +G       
Sbjct: 68  VLFLFVVMMLDID-----PTKLREGWVRYLPVGLIVA-VAMLVQMLILIGVKGRAVTPFP 121

Query: 121 ---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               + L    +NV  + + L+T+Y  P E +  IL ++++ A++L LR R  +K Q+  
Sbjct: 122 ADNAAALAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNPG 181

Query: 178 KQLESNPDNSIVMVK 192
           +Q     D  + MVK
Sbjct: 182 EQTMVKADQRLRMVK 196


>gi|56416877|ref|YP_153951.1| NADH dehydrogenase chain J [Anaplasma marginale str. St. Maries]
 gi|222475242|ref|YP_002563658.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str.
           Florida]
 gi|254995065|ref|ZP_05277255.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str.
           Mississippi]
 gi|255003226|ref|ZP_05278190.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004354|ref|ZP_05279155.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str.
           Virginia]
 gi|56388109|gb|AAV86696.1| NADH dehydrogenase chain J [Anaplasma marginale str. St. Maries]
 gi|222419379|gb|ACM49402.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str.
           Florida]
          Length = 200

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 111/184 (60%), Gaps = 11/184 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M S  F+ F+ +A++S+  VV + NP+YSV SLI  F  ++ +F++LGAE VAM+ ++VY
Sbjct: 1   MLSFLFFCFAGVAVLSAVGVVLLPNPVYSVLSLILTFFVSSAVFIMLGAELVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V FLF++MMLDI    +    + G +  + +G+    L      + VF A+    
Sbjct: 61  VGAVAVLFLFVVMMLDI----SRVGSRHGLVKHYPLGVACMFLFFGCMVYSVFHAKSSAV 116

Query: 123 RLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRRDIKRQDI 176
                G    +NV  IG  LYT+YAY  +++G +LL++ +G+++L++     R +K QD+
Sbjct: 117 DGSGSGFGSVDNVFLIGLQLYTEYAYAFQLAGVLLLIAGVGSLILIVGGSSGRSLK-QDV 175

Query: 177 SKQL 180
            +Q+
Sbjct: 176 GQQV 179


>gi|317097375|ref|YP_004123584.1| NADH dehydrogenase subunit 6 [Plakina monolopha]
 gi|308912589|gb|ADO51356.1| NADH dehydrogenase subunit 6 [Plakina monolopha]
          Length = 197

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 14/190 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-------FFIGILAAELIVCAS------NFM 113
           + FLF+IMML++ D+E A        +GS       F I I+  E IV  +      N  
Sbjct: 65  ILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEIFIIGREAIVYNNRDSDYENLT 124

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++S  + K  N+E +G +LYT Y Y   ++ FILL++MIGAIVL      ++KR
Sbjct: 125 DVLGFWDVSIEIIKFYNIEVLGXILYTDYFYSFILASFILLVAMIGAIVLTQELGIELKR 184

Query: 174 QDISKQLESN 183
           QD+  Q   N
Sbjct: 185 QDLFIQTSRN 194


>gi|325267329|ref|ZP_08133991.1| NADH-quinone oxidoreductase subunit J [Kingella denitrificans ATCC
           33394]
 gi|324981266|gb|EGC16916.1| NADH-quinone oxidoreductase subunit J [Kingella denitrificans ATCC
           33394]
          Length = 217

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 118/198 (59%), Gaps = 3/198 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FYLF+ + +  +   VT +NP+++   L+  F  +A ++LL+ AEF+ +  +V
Sbjct: 1   MTFQLILFYLFAAVILYGALQTVTAKNPVHAALHLVLTFCASAMMWLLMQAEFLGITLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFSAE 118
           VYVGAV+V FLF++MML+ID+E       R    +  +G+L A L++    +     +  
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDVEEMRQGFWRHAPAALVVGVLMAALLIAIFLAPDTALNQF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    +NV ++GK +YT Y  P E++  +L+L M+ AI L+ R   + KRQD ++
Sbjct: 121 GLMKDIPADYSNVRDLGKQIYTAYLLPFELAAVLLVLGMVAAIALVHRKTNNPKRQDPAE 180

Query: 179 QLESNPD-NSIVMVKVKS 195
           Q++ + D N + +VK++S
Sbjct: 181 QVKVSADKNRMRLVKMES 198


>gi|164420948|ref|YP_001648461.1| NADH dehydrogenase subunit 6 [Amphimedon compressa]
 gi|158668072|gb|ABW76536.1| NADH dehydrogenase subunit 6 [Amphimedon compressa]
          Length = 184

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 102/179 (56%), Gaps = 8/179 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+  A IS  +V++  + ++SV  LI  F++A+ LF+LL  EF+A I L+VYVGA+ 
Sbjct: 5   FYLFALGATISGIMVISAFSSVHSVLWLIMVFISASALFILLEVEFIAFIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           + FLF+IMML++                  IGI+    +  A +F   +  G    LV K
Sbjct: 65  ILFLFVIMMLNLTGPGMGDDMSNYLPAGLIIGIV---FLFEALSFRSTTLGGNWPLLVEK 121

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR---QDISKQLESN 183
             N+E +G+VLYT Y Y   I+ FILL++MIGAIV  L H   I++   QDI  Q+   
Sbjct: 122 APNIEVLGRVLYTDYYYLFIIASFILLVAMIGAIV--LTHDEGIEKRKGQDIYIQISRQ 178


>gi|317097078|ref|YP_004123217.1| NADH dehydrogenase subunit 6 [Plakortis halichondrioides]
 gi|308912711|gb|ADO51470.1| NADH dehydrogenase subunit 6 [Plakortis halichondrioides]
          Length = 197

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 14/190 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-------- 118
           +  LF+IMML++ D+E          +GS     L  E+ +     +V+S          
Sbjct: 65  IXXLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNGDTNYGXLM 124

Query: 119 -----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++S  + K +N+E +G+VLYT Y Y   ++ FILL++MIGAIV       ++KR
Sbjct: 125 DVLDFSDVSLEIIKFSNIEALGRVLYTDYFYSFLLASFILLVAMIGAIVXTHELGIELKR 184

Query: 174 QDISKQLESN 183
           QD+  Q   N
Sbjct: 185 QDLFIQTSRN 194


>gi|23464626|ref|NP_696994.1| NADH dehydrogenase subunit 6 [Monosiga brevicollis ATCC 50154]
 gi|23344088|gb|AAN28364.1| NADH dehydrogenase subunit 6 [Monosiga brevicollis]
          Length = 228

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 30/203 (14%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y+FS  A  S  LV++ +NPI SV  L+  F N++ L L+LG EF+A++ L+VYVGA+ +
Sbjct: 7   YIFSIGAFFSGILVISSKNPINSVLGLVMCFANSSILLLMLGFEFLALLFLIVYVGALAI 66

Query: 69  FFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
            FLF++MML+I  +E+ E   +   +G     I   EL+V        S+    ++L F 
Sbjct: 67  LFLFVVMMLNIRLVELIENFTRYLPIGGIIGIIFILELMVIVDEQFAMSSNNLFTQLFFI 126

Query: 128 GN---------------------------NVENIGKVLYTQ-YAYPLEISGFILLLSMIG 159
            N                           N+E+IG++LYT  Y Y + +S  +LL++M+G
Sbjct: 127 NNPYELSLFMNSYSVDITSNYNNNIVNLTNIESIGQILYTHGYIYFI-VSSIVLLIAMVG 185

Query: 160 AIVLMLRHRRDIKRQDISKQLES 182
           AIVL L H + +KRQDI  Q+ +
Sbjct: 186 AIVLTLYHEQGVKRQDIFSQIST 208


>gi|284106854|ref|ZP_06386297.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830033|gb|EFC34309.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 170

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 101/163 (61%), Gaps = 4/163 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  F  F+ + ++++ LVV +RNPIYS  SL+  F + AGL++ L AEF+A I ++VY
Sbjct: 1   MATFVFLYFAAVILVAASLVVVLRNPIYSALSLLVMFFHVAGLYVTLHAEFLAAIQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGE 120
            GA++V +LF++M+L++  E  E   ++G +  F   +L  E  L+  +  F V + +  
Sbjct: 61  AGAILVLYLFVVMLLNVKRE--ERFNQQGTVALFLGLVLLTEAVLLAVSRGFNVATPDPG 118

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                    N E+IG+VLY+ Y +P EI+  ILL++MIGA++L
Sbjct: 119 PEGAAKAVGNTESIGEVLYSTYLFPFEIASLILLVAMIGAVIL 161


>gi|6137794|ref|NP_009264.1| NADH dehydrogenase subunit 6 [Metridium senile]
 gi|3914175|sp|O47498|NU6M_METSE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|913914|gb|AAB32500.1| NADH dehydrogenase complex subunit 6 [Metridium senile]
 gi|2920996|gb|AAC04641.1| NADH dehydrogenase subunit 6 [Metridium senile]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 115/198 (58%), Gaps = 23/198 (11%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +++F+  SF  + S  +V++  NP++SVF L+ AF+++A LF+LLG +F+A++ +++Y
Sbjct: 1   MVTMYFFTLSFGTVASGIMVISALNPVHSVFWLVVAFISSAALFILLGVDFIALMFIIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG-------------FLGSFFIGILAAELIVCA 109
           VGA+ + FLF+IMML  ++    P  +RG              +G+ F   +A+  ++  
Sbjct: 61  VGAIAILFLFVIMML--NLTDFTPAFRRGGEADMTNYVPIGLAVGTLFFEAIASSWLIMG 118

Query: 110 SNFMVFSAEG--ELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
             ++     G  +L+   F  K +N+E IG++LYT   Y   +  FILL++M+GAIVL  
Sbjct: 119 GPYVYRGLLGAWDLANPWFLKKYHNIEAIGRILYTDCYYLFILVSFILLVAMLGAIVLTQ 178

Query: 166 RHRRDI----KRQDISKQ 179
               +I    K+QDI  Q
Sbjct: 179 EIGTEIGPTAKKQDIFVQ 196


>gi|167627162|ref|YP_001677662.1| NADH dehydrogenase I subunit J [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241667724|ref|ZP_04755302.1| NADH dehydrogenase I, J subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876268|ref|ZP_05248978.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|167597163|gb|ABZ87161.1| NADH dehydrogenase I, J subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842289|gb|EET20703.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 201

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 20/206 (9%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+  + FY+F+ +AIIS+ ++V   NP+ SV ++IF FV  A ++++    ++A++ +V
Sbjct: 1   MVVTDILFYIFASLAIISALVLVLANNPVNSVIAMIFTFVFTAAVWIIFQQVYLALLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++ MLD+ +E      K+G +G FF     A +IVCA    V S    
Sbjct: 61  VYVGAVLVMFLFVVFMLDLHVE------KQGRVGRFFYAF--AAIIVCAIFATVISYA-- 110

Query: 121 LSRLVFKGNNVEN-------IGKVLYTQYA-YPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +  VF G++++        IG  ++     Y  E+  FILL +M  AI L LR +R   
Sbjct: 111 -ATKVFAGDSMQGGVGGLKIIGLTMFDNSNLYVFELVDFILLAAMTAAITLTLRSKRKGN 169

Query: 173 RQ-DISKQLESNPDNSIVMVKVKSGK 197
           +  + ++Q++    + + MVK+ S +
Sbjct: 170 KSVNPAQQVKVRAKDRLTMVKIPSNR 195


>gi|285017801|ref|YP_003375512.1| NADH-quinone oxidoreductase chain j (nadh dehydrogenaseI chain j)
           (ndh-1, chain j) oxidoreductase [Xanthomonas albilineans
           GPE PC73]
 gi|283473019|emb|CBA15524.1| probable nadh-quinone oxidoreductase chain j (nadh dehydrogenaseI
           chain j) (ndh-1, chain j) oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 216

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 12/198 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++F+ +A +++  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVGAV+
Sbjct: 8   FWIFATIAAVAAGAVISVRNPVYAVLCLILTFFSIACVWLLVGAEFLGVTLVLVYVGAVM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFSAEG 119
           V FLF++MMLDID      R + G++    +G+  A         LI   +  +      
Sbjct: 68  VLFLFVVMMLDID----SVRLREGWVRYLPVGLAVALAMLVQMVTLIGVKARTVAPFPAD 123

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             +      +N+  + K L+TQ+  P E +  IL ++++ A++L LR R  IK Q+  +Q
Sbjct: 124 NAAAQAADTSNIAWLAKTLFTQFLLPFEFAAIILTVAVVAAVMLTLRKRTGIKTQNPGEQ 183

Query: 180 LESNPDNSIVMVKVKSGK 197
                 + + MVK+ + K
Sbjct: 184 SRVKAGDRLRMVKMDAEK 201


>gi|262186704|ref|YP_003275963.1| NADH dehydrogenase subunit 6 [Pleurozia purpurea]
 gi|237780701|gb|ACR19347.1| NADH dehydrogenase subunit 6 [Pleurozia purpurea]
          Length = 199

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 23/204 (11%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+F  +A++S  +V+  +NP++SV  LI  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFYVFVVLALVSGAMVIRAKNPVHSVLFLISVFRNTSGLLVLLGPDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFF------------IGILAAELIVC 108
           + V F F++MML   IE       R     G +G  F            I IL+ +    
Sbjct: 62  IAVSFSFVVMMLHTRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILSTK---S 118

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            + ++ ++   E    +    N E +G +LYT Y +   +S  I L+++IGAIVL +   
Sbjct: 119 GATYLTYTVYAE---KIHSWTNSETLGNLLYTTYFFLFLVSSLISLVALIGAIVLTMHKT 175

Query: 169 RDIKRQDISKQLESNPDNSIVMVK 192
             +KRQD+  Q   +  N+I  V+
Sbjct: 176 TRVKRQDVFIQNAIDFRNTIRKVR 199


>gi|88608358|ref|YP_505913.1| NADH dehydrogenase I, J subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600527|gb|ABD45995.1| NADH dehydrogenase I, J subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 189

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 114/187 (60%), Gaps = 12/187 (6%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +AI SSF VV+ RN +++V  L+ AF  ++ L L+ G E ++++ LVVYVGA+ + FLF+
Sbjct: 11  VAIFSSFRVVSCRNVVHAVLYLVLAFFTSSVLLLVSGLEVLSLMLLVVYVGAIAILFLFV 70

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR-LVFKGNNVE 132
           +MML+ D    +  K  G   + ++G+L   L+     F+V S+  +  +   + G  ++
Sbjct: 71  VMMLNSD----DFEKGIGMSVAKYVGLLFMALL---PFFLVLSSYDDTQQERAYIG--IK 121

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
           +IG VLYT Y Y   +SG +LLL+M+ AI + L  +RD K Q + +Q+  +  + + ++ 
Sbjct: 122 DIGAVLYTDYVYLFHLSGVVLLLAMVAAISIALPSKRDTKCQVVKEQISRS--SVVRLLN 179

Query: 193 VKSGKGI 199
           V SGKG+
Sbjct: 180 VPSGKGV 186


>gi|325921402|ref|ZP_08183259.1| NADH dehydrogenase subunit J [Xanthomonas gardneri ATCC 19865]
 gi|325548160|gb|EGD19157.1| NADH dehydrogenase subunit J [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 12/200 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVGAV+
Sbjct: 16  FYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 75

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFSAEG 119
           V FLF++MMLDID      R + G++    +G++ A         LI   +         
Sbjct: 76  VLFLFVVMMLDIDTS----RLREGWVKYMPVGVIVAVAMFAQMVTLIGVKARSATPFPAD 131

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+   Q
Sbjct: 132 NAAAQAADVSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNAGDQ 191

Query: 180 LESNPDNSIVMVKVKSGKGI 199
                 + + MVK+   K +
Sbjct: 192 SRVKAGDRLRMVKMAVEKPV 211


>gi|190575269|ref|YP_001973114.1| NADH dehydrogenase subunit J [Stenotrophomonas maltophilia K279a]
 gi|190013191|emb|CAQ46824.1| putative NADH-ubiquinone oxidoreductase, chain J [Stenotrophomonas
           maltophilia K279a]
          Length = 218

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 112/195 (57%), Gaps = 16/195 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++F+  A +S+  V++VRNP+++V  L+  F + A ++LL+GAEF+ +  ++VYVGAV+
Sbjct: 8   FWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVLVYVGAVM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR-GFLGSFFIGILAAELIVCASNFMVFSAEGE------ 120
           V FLF++MMLDID     P K R G++    +G++ A + +     ++   +G       
Sbjct: 68  VLFLFVVMMLDID-----PTKMREGWVRYLPVGLIVA-VAMLVQMLILIGVKGRAVTPFP 121

Query: 121 ---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               + +    +NV  + + L+T+Y  P E +  IL ++++ A++L LR R  +K Q+  
Sbjct: 122 ADNAAAVAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNPG 181

Query: 178 KQLESNPDNSIVMVK 192
           +Q        + MVK
Sbjct: 182 EQTMVKAGQRLRMVK 196


>gi|332285008|ref|YP_004416919.1| NADH-ubiquinone oxidoreductase, chain J [Pusillimonas sp. T7-7]
 gi|330428961|gb|AEC20295.1| NADH-ubiquinone oxidoreductase, chain J [Pusillimonas sp. T7-7]
          Length = 212

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 116/197 (58%), Gaps = 5/197 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++ FY+ + + ++++F V+T  +P+  V  LI  F  A+ +++L GAEF++++ ++
Sbjct: 1   MIFSTILFYVLALVLVVAAFRVITANSPVTGVLHLILTFFTASMIWMLQGAEFLSLLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELI-VCASNFMVFSAE 118
           VYVGAV+V FLF++MMLD+ ++      K        IG I+  E+  V A +++     
Sbjct: 61  VYVGAVMVLFLFVVMMLDVRMDALRAGMKTYLPMGLIIGLIMVLEMAFVLAKSWL---GA 117

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  + +    +N   +G  +YT Y + ++I G ILL+ MI AI L LR R D+KR + S+
Sbjct: 118 GPAAVIADDVDNTHALGVAMYTDYVFAVQIGGVILLVGMIAAIALTLRKRADVKRTNPSE 177

Query: 179 QLESNPDNSIVMVKVKS 195
           Q++    + + MV + S
Sbjct: 178 QVKVKAQDRLRMVSIPS 194


>gi|166712605|ref|ZP_02243812.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 219

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 5   TLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 64

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116
           AV+V FLF++MMLDID      R + G++    +G++ A         LI   +      
Sbjct: 65  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      N + MVK+   K +
Sbjct: 181 GEQSRVKAGNRLRMVKMAVEKPV 203


>gi|46202538|ref|ZP_00208558.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 159

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 103/166 (62%), Gaps = 18/166 (10%)

Query: 45  LFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFL-----GSFFI 98
           +FLLLGAEF+AM+ ++VYVGAV V FLF++MMLDI+ +E+     K GFL     G+   
Sbjct: 1   MFLLLGAEFLAMVLVIVYVGAVAVLFLFVVMMLDINMVEL-----KEGFLQYLPTGALIA 55

Query: 99  GILAAELIVCASNFMVFSAEGEL-----SRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
            +L  EL+     +  F+ + E      +  + + +N   +GK++YT Y Y  + SG +L
Sbjct: 56  VVLLVELLAMFGGW-AFAPDVEAMIKAPTPTLDQASNTVALGKLIYTNYVYLFQASGLVL 114

Query: 154 LLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           L++MIG I+L  R R  +++Q I+ Q+  + D S+ + KV+SG+GI
Sbjct: 115 LVAMIGTILLTHRKRTGVRKQIIADQVGRSRD-SVELKKVQSGRGI 159


>gi|317134163|ref|YP_004123416.1| NADH dehydrogenase subunit 6 [Corticium candelabrum]
 gi|308912772|gb|ADO51527.1| NADH dehydrogenase subunit 6 [Corticium candelabrum]
          Length = 197

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 105/186 (56%), Gaps = 14/186 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY      ++S  +V++  NPI+SVF LI  F  A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAIVLAVLVSGIMVISALNPIHSVFWLIAVFGGASALFILLNIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119
           + FLF+IMML++ D+E A        +GS     L  E+ +     +V+S          
Sbjct: 65  ILFLFVIMMLNLTDLESAGDMSNYIPIGSVMGVFLLFEIFIVGREAIVYSNRDTDYENLI 124

Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++S  +   +N+E +G++LY  Y Y   ++ FILL++MIGAIVL      ++KR
Sbjct: 125 DVLDFWDVSIEIINFSNIEALGRILYIDYFYSFLLASFILLVAMIGAIVLTHELGIELKR 184

Query: 174 QDISKQ 179
           QD+  Q
Sbjct: 185 QDLFIQ 190


>gi|323398669|ref|YP_004222744.1| NADH dehydrogenase subunit 6 [Glaucocystis nostochinearum]
 gi|321401362|gb|ADW83116.1| NADH dehydrogenase subunit 6 [Glaucocystis nostochinearum]
          Length = 249

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 30/220 (13%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++  FF LFSF+A+ SS + +T +NPI+SVF LI  F N  GL +LL AEF+AM+ LVVY
Sbjct: 30  IEYTFFILFSFLALFSSIIAITSKNPIHSVFYLILVFFNVTGLLILLNAEFLAMLILVVY 89

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNF--------- 112
           +GA+ V FLF++MML+I  I + +   K  F   F   +L  E+ +   N          
Sbjct: 90  LGAIAVLFLFVVMMLNIKYITLKQITYKNFFFEFFIFLLLFLEVFLLTENNVLPNIINFF 149

Query: 113 -MVFSAEGE-----LSRLVFK----GNNVENIGKVLYTQ----------YAYPLEISGFI 152
            M F    E     ++ L FK      ++ +    LYT           Y Y   ++GFI
Sbjct: 150 DMKFLTNIEKYLDVINNLYFKYYKTSLDLGSFDNSLYTNAHLFGVIYISYLYYFFMAGFI 209

Query: 153 LLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
           LL++MIGAIVL L  R ++++Q I  Q+  +   ++V+ K
Sbjct: 210 LLIAMIGAIVLTLHRRPNVRKQQIIDQITRDFKAAVVLRK 249


>gi|254521117|ref|ZP_05133172.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Stenotrophomonas sp.
           SKA14]
 gi|219718708|gb|EED37233.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Stenotrophomonas sp.
           SKA14]
          Length = 218

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 113/195 (57%), Gaps = 16/195 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++F+  A +S+  V++VRNP+++V  L+  F + A ++LL+GAEF+ +  ++VYVGAV+
Sbjct: 8   FWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVLVYVGAVM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR-GFLGSFFIGILAAELI---------VCASNFMVFSA 117
           V FLF++MMLDID     P K R G++    +G++ A  +         V A +   F A
Sbjct: 68  VLFLFVVMMLDID-----PTKLREGWVRYLPVGLIVAVAMLVQMLVLIGVKARSVTPFPA 122

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   + +    +NV  + + L+T+Y  P E +  IL ++++ A++L LR R  +K Q+  
Sbjct: 123 D-NAAAVAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNPG 181

Query: 178 KQLESNPDNSIVMVK 192
           +Q        + MVK
Sbjct: 182 EQTMVKAGQRLRMVK 196


>gi|313768549|ref|YP_004062223.1| NADH dehydrogenase subunit 6 [Plocamiocolax pulvinata]
 gi|312844676|gb|ADR03239.1| NADH dehydrogenase subunit 6 [Plocamiocolax pulvinata]
          Length = 200

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 109/185 (58%), Gaps = 5/185 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++FS   +IS+ +V+   N ++SV  LI  F N A L L LGAEF++ + ++VYVGA+ V
Sbjct: 9   FIFSSFVLISALMVIYSSNAVHSVLFLILVFFNMAILLLFLGAEFISFLLIIVYVGAIAV 68

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
            FLF++MML+  I      +K  + LG     I++++     S  +V   +  +  L F 
Sbjct: 69  LFLFVVMMLNTKISSKNMDQKSIWPLGIIIFFIISSQFYNINSQNLVLVFDNNILVLWFN 128

Query: 128 G----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
                NN++ IGK+ YT Y++   +S F+LL++MIGAI L L H+ +IK+Q I+ QL  N
Sbjct: 129 ESFFFNNIQVIGKLFYTYYSFLFFLSSFLLLIAMIGAITLTLHHKTNIKKQQINTQLIRN 188

Query: 184 PDNSI 188
              SI
Sbjct: 189 YKGSI 193


>gi|302035983|ref|YP_003796305.1| NADH-quinone oxidoreductase membrane subunit J [Candidatus
           Nitrospira defluvii]
 gi|300604047|emb|CBK40379.1| NADH-quinone oxidoreductase, membrane subunit J [Candidatus
           Nitrospira defluvii]
          Length = 206

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 7/172 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  +FF+ F+ +   +S LVV +RNP+YS  SL+  F + AGL++ L AEF+A + +VVY
Sbjct: 38  MDHIFFFYFAAVIAATSLLVVALRNPVYSALSLLIMFFHVAGLYVTLHAEFLAAVQIVVY 97

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGEL 121
            GA++V +LF++M+L I    +E R       +  +G+ L  E+I+        +A    
Sbjct: 98  AGAILVLYLFVVMLLSIK---SEERYHSQLPVAGLLGVMLCTEVILLFIQSRTGAAAPAA 154

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           +  +    N E IG+ LY+ Y +P E++  ILL++MIGAI+L    ++DI  
Sbjct: 155 ADPIAGPGNTEMIGEALYSTYLFPFEVASLILLVAMIGAIILA---KKDINE 203


>gi|115494865|ref|YP_778635.1| NADH dehydrogenase subunit 6 [Chrysopathes formosa]
 gi|82792226|gb|ABB90975.1| NADH dehydrogenase subunit 6 [Chrysopathes formosa]
          Length = 210

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 24/193 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +F AI S  +V++  NP++S+F L+ AF ++A LF+LLG +F+A+I L++YVGA+ 
Sbjct: 6   FYTLAFGAIASGIMVISALNPVHSIFWLVVAFTSSAALFILLGVDFIALIFLIIYVGAIA 65

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFF-IGILAAELIVC--ASNFMVFS------- 116
           + FLF+IM+L++ D   A        + ++  IG+    L+    AS++++ S       
Sbjct: 66  ILFLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLAIGTLLFSEVASSWLIMSGPYVHRG 125

Query: 117 -------AEGELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                  +  +L+   F  K +N+E IG++LYT Y Y   ++ FILL+++IGAIVL    
Sbjct: 126 SFRAEIGSSWDLANPWFLIKYHNIEAIGRILYTDYYYIFILASFILLVALIGAIVLTQEI 185

Query: 168 RRDI----KRQDI 176
             ++    K+QDI
Sbjct: 186 GSEVGPTAKKQDI 198


>gi|118498232|ref|YP_899282.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           novicida U112]
 gi|194324416|ref|ZP_03058189.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family
           [Francisella tularensis subsp. novicida FTE]
 gi|208780259|ref|ZP_03247601.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family
           [Francisella novicida FTG]
 gi|254373573|ref|ZP_04989059.1| hypothetical protein FTCG_01670 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254375040|ref|ZP_04990520.1| hypothetical protein FTDG_01228 [Francisella novicida GA99-3548]
 gi|118424138|gb|ABK90528.1| NADH dehydrogenase I, J subunit [Francisella novicida U112]
 gi|151571297|gb|EDN36951.1| hypothetical protein FTCG_01670 [Francisella novicida GA99-3549]
 gi|151572758|gb|EDN38412.1| hypothetical protein FTDG_01228 [Francisella novicida GA99-3548]
 gi|194321481|gb|EDX18966.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family
           [Francisella tularensis subsp. novicida FTE]
 gi|208743908|gb|EDZ90210.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family
           [Francisella novicida FTG]
 gi|332678968|gb|AEE88097.1| NADH-ubiquinone oxidoreductase chain J [Francisella cf. novicida
           Fx1]
          Length = 201

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 120/203 (59%), Gaps = 14/203 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+  + FY F+ +AIIS+ ++V   NP+ SV ++IF F+  A ++++L   ++A++ +V
Sbjct: 1   MVVTDILFYTFASLAIISALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAE 118
           VYVGAV+V FLF++ MLD+ +E      ++G +G FF  +  A ++VCA  +  + ++A 
Sbjct: 61  VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYAL--AAVVVCAIFATVISYAAT 112

Query: 119 GELSRLVFKG--NNVENIGKVLYTQYA-YPLEISGFILLLSMIGAIVLMLR-HRRDIKRQ 174
              +  + +G    ++ IG  +++    Y  E+  FILL +M  AI L LR  R+  K  
Sbjct: 113 NVFAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTV 172

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
           + ++Q++    + + MVK+ S  
Sbjct: 173 NPAQQVKVRAKDRLTMVKMPSNN 195


>gi|94502583|ref|YP_588429.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays]
 gi|40795022|gb|AAR91066.1| NADH dehydrogenase subunit 6 [Zea mays]
          Length = 220

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI LVVY+GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLILLGLDFFAMIFLVVYIGAIAVLFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM +I I     EV       G +G  F            I +L       +  + V++ 
Sbjct: 70  MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLKYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|332184787|gb|AEE27041.1| NADH-ubiquinone oxidoreductase chain J [Francisella cf. novicida
           3523]
          Length = 201

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 120/203 (59%), Gaps = 14/203 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+ ++ FY F+ +AIIS+ ++V   NP+ SV ++IF F+  A ++++L   ++A++ +V
Sbjct: 1   MVVTNILFYTFASLAIISALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAE 118
           VYVGAV+V FLF++ MLD+ +E      ++G +G FF  +  A ++VCA  +  + ++A 
Sbjct: 61  VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYAL--AAVVVCAIFATVISYAAT 112

Query: 119 GELSRLVFKG--NNVENIGKVLYTQYA-YPLEISGFILLLSMIGAIVLMLR-HRRDIKRQ 174
              +  + +G    ++ IG  ++     Y  E+  FILL +M  AI L LR  R+  K  
Sbjct: 113 NVFAGAMMQGGVGGLKIIGLTMFNNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTV 172

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
           + ++Q++    + + MVK+ S  
Sbjct: 173 NPAQQVKVRAKDRLTMVKMPSNN 195


>gi|109156563|ref|YP_654373.1| NADH dehydrogenase subunit 6 [Nematostella sp. JVK-2006]
 gi|108744126|gb|ABG02347.1| NADH dehydrogenase subunit 6 [Nematostella sp. JVK-2006]
          Length = 199

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 112/196 (57%), Gaps = 25/196 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  SF  + S  +V++  NP++SVF L+ AF ++A LF+LLG +F+A++ +++YVGA+ 
Sbjct: 3   FYALSFGTVASGIMVISALNPVHSVFWLVVAFTSSAALFVLLGVDFIALMFVIIYVGAIA 62

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFM 113
           + FLF+IMML++ D     P  + G              +G+ F   +A+  ++    ++
Sbjct: 63  ILFLFVIMMLNLADF---SPAFRLGGEADMTNYVPIGLAIGTLFFEAIASSWLIMGGPYV 119

Query: 114 VFSAEGELS----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             S+ G  +      + K +N+E IG++LYT   Y   ++ FILL++MIGAIVL      
Sbjct: 120 HKSSLGTWNLANPWFLTKYHNIEAIGQILYTDCYYLFILASFILLVAMIGAIVLTQEIGS 179

Query: 170 DI----KRQDISKQLE 181
           ++    K+Q+I  Q+ 
Sbjct: 180 EVGPAAKKQNIFSQIS 195


>gi|289608459|emb|CBI60588.1| unnamed protein product [Sordaria macrospora]
          Length = 184

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 11/151 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           +V+Q+L FYLF+ + + S+ L +T RNP++SV  LI AF NAAGL +L GAEF+AM+ ++
Sbjct: 38  LVIQTLAFYLFATIVVASAALTITSRNPVHSVLWLILAFFNAAGLMVLCGAEFIAMLLVI 97

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL---GSFFIGILAAELIVCASNFMVFSA 117
           VYVGAV V FLF++MMLDID        + GF+    +     +   + +    +   +A
Sbjct: 98  VYVGAVAVLFLFVVMMLDIDFT----ELRAGFVRYLPAGLALAVLLAVELVVGAYAWTAA 153

Query: 118 EGELSRLVFKGN----NVENIGKVLYTQYAY 144
             +L++ +   +    N+E IG++LY++Y Y
Sbjct: 154 RIDLAKRIAPTDVAVPNIEAIGRLLYSRYLY 184


>gi|110637778|ref|YP_677985.1| NADH dehydrogenase I subunit J [Cytophaga hutchinsonii ATCC 33406]
 gi|110280459|gb|ABG58645.1| NADH dehydrogenase subunit J [Cytophaga hutchinsonii ATCC 33406]
          Length = 169

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 103/179 (57%), Gaps = 22/179 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++ FY+ S + + S+  V+  +NP+YSV SL+  F    G  LLL A+F+A++ ++VY
Sbjct: 1   MGNILFYILSGITLCSALFVILSKNPVYSVLSLVITFCCITGHMLLLSADFLAVVNIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-----FMVFSA 117
            GA++V FLF+IMML+++   A+P K        F+  LAA    C S       +V+  
Sbjct: 61  AGAIMVLFLFVIMMLNLNDAAAQPNKP-------FLSKLAA----CVSGGLLLISLVYLL 109

Query: 118 EG------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +G      ++S+L     + + +GK+L+ Q+  P EI+  + L +MIGA++L  +  +D
Sbjct: 110 KGYQVGSIDMSKLDHNFGSAQELGKILFNQFILPFEITSVLFLSAMIGAVMLGKKDLKD 168


>gi|124515807|gb|EAY57316.1| putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum
           rubarum]
          Length = 169

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 10/166 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ   F  F    +IS+  VV  RNPIYSV SL+  F++ AGL+++L AEF+A + L+VY
Sbjct: 1   MQMAMFGYFGAAIVISALFVVYFRNPIYSVMSLLTMFMHIAGLYVILEAEFLAGVQLLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR-GFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++V +LF++M+L++       +K+    +G   +GI+    ++  + F       EL
Sbjct: 61  AGAILVLYLFVVMLLNVQSRGRFIQKQTPAVVGLGILGIVEVVALIFHTRF-----YPEL 115

Query: 122 SRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
             +   G     N E IG VLYTQY +P EI+  +LL++++GAIVL
Sbjct: 116 PAIPHPGVPTLGNTETIGMVLYTQYLFPFEIASLVLLIALVGAIVL 161


>gi|206602051|gb|EDZ38533.1| Putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum
           sp. Group II '5-way CG']
          Length = 169

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 10/166 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ   F  F    +IS+  VV  RNPIYSV SL+  F++ AGL+++L AEF+A + L+VY
Sbjct: 1   MQMAMFGYFGAAIVISALFVVYFRNPIYSVMSLLTMFMHIAGLYVILEAEFLAGVQLLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++V +LF++M+L++       +K+    +G   +GI+    ++  + F       EL
Sbjct: 61  AGAILVLYLFVVMLLNVQSRGRFIQKQTPVVVGLGILGIVEVAALIFRTRF-----YPEL 115

Query: 122 SRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
             +   G     N E IG VLYTQY +P EI+  +LL++++GAIVL
Sbjct: 116 PAIPHPGVPTLGNTETIGMVLYTQYLFPFEIASLVLLIALVGAIVL 161


>gi|56791554|gb|AAW30315.1| NADH dehydrogenase subunit 6 [Amborella trichopoda]
          Length = 179

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 24/184 (13%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A +SS +V+  +NP++SVF  I  F N +GL +LLG +F A I LVVYVGA+ V FLF+
Sbjct: 1   IASVSSVMVIRAKNPVHSVFFFILVFFNTSGLLVLLGLDFFATIFLVVYVGAIAVLFLFV 60

Query: 74  IMMLDIDI-EVAEPRKKR----GFLGSFF------------IGILAAELIVCASNFMVFS 116
           ++MLDI I E+ E   +     G +G  F            I IL  +L   ++ ++ ++
Sbjct: 61  VLMLDIKIAEIHENLLRHLPVGGIIGVLFLLEIFFLVDNDYIPILPTKL---STTYLTYT 117

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQD 175
              E  +      N+E +G +LYT Y     +   ILL++MIGAIV    H+   +KRQD
Sbjct: 118 VYAEKIQ---SWTNLETLGNLLYTTYFVLFLVYSLILLVAMIGAIVQKTMHKTTRVKRQD 174

Query: 176 ISKQ 179
           + ++
Sbjct: 175 VFRR 178


>gi|289665182|ref|ZP_06486763.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 227

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 13  TIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 72

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116
           AV+V FLF++MMLDID      R + G++    +G++ A         LI   S      
Sbjct: 73  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRSATPF 128

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 129 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 188

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 189 GEQSRVKAGDRLRMVKMAVEKPV 211


>gi|254796410|ref|YP_003081246.1| NADH dehydrogenase i, j subunit [Neorickettsia risticii str.
           Illinois]
 gi|254589647|gb|ACT69009.1| NADH dehydrogenase i, j subunit [Neorickettsia risticii str.
           Illinois]
          Length = 189

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 116/196 (59%), Gaps = 20/196 (10%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +L   +AI SSF VV+ RN +++V  L+ AF  ++ L L  G E ++++ LVVYVGA+ +
Sbjct: 6   FLLVLVAIFSSFRVVSCRNVVHAVLYLVLAFFTSSVLLLAAGLEVLSLMLLVVYVGAIAI 65

Query: 69  FFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
            FLF++MML+ D     +E++  +    ++G  FI +L   L++ + +      + E + 
Sbjct: 66  LFLFVVMMLNSDDFKKGVEMSVAK----YVGLLFIALLPFFLVLSSYD----DTQQERTY 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           +     ++++IG VLYT Y Y   +SG +LLL+M+ AI + L  + D K Q + +Q+  +
Sbjct: 118 V-----SIKDIGAVLYTDYVYLFHLSGVVLLLAMVAAISIALPSKSDTKCQVVREQISRS 172

Query: 184 PDNSIVMVKVKSGKGI 199
             + + ++ V SGKG+
Sbjct: 173 --SVVRLLNVPSGKGV 186


>gi|254445138|ref|ZP_05058614.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198259446|gb|EDY83754.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 167

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 19/177 (10%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  LFFY+F+ + +  +F VV  RNP+ +   LI  F+  A LF++L A F+A+I ++VY
Sbjct: 1   MTDLFFYIFAAITLACAFAVVFSRNPVNAAMFLILTFLGMASLFVMLEAYFLAVIQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF---------IGILAAELIVCASNFM 113
            GAV+V FLFIIM+LD+  E     K    + S           +GI +++ I   +  +
Sbjct: 61  AGAVVVLFLFIIMLLDVKEESKAKLKPLTLVASVIGFAILLVGVVGITSSDNIKATTETL 120

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +A          G  ++N G  L+T Y  P++++GF+LL++MIG IVL  R + D
Sbjct: 121 PEAA----------GATLKNFGYELFTTYQLPMQVTGFLLLVAMIGVIVLSKRVKTD 167


>gi|270158105|ref|ZP_06186762.1| NADH-quinone oxidoreductase J subunit [Legionella longbeachae
           D-4968]
 gi|289163630|ref|YP_003453768.1| NADH-quinone oxidoreductase chain J [Legionella longbeachae NSW150]
 gi|269990130|gb|EEZ96384.1| NADH-quinone oxidoreductase J subunit [Legionella longbeachae
           D-4968]
 gi|288856803|emb|CBJ10614.1| NADH-quinone oxidoreductase chain J [Legionella longbeachae NSW150]
          Length = 214

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 121/205 (59%), Gaps = 15/205 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+ +AI ++F+V+   NP+ SV  L+  F  +A L++L  AEF+A+I ++VYVGAV+
Sbjct: 10  FYIFAALAIGAAFMVIIQDNPVRSVLFLVLTFFASAALWILAEAEFLALILILVYVGAVM 69

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELI--VCASNFMV--FSAE 118
             FLF++MML+ID+E+ +   KR       L + FIG+L   +       N  V  ++  
Sbjct: 70  TLFLFVVMMLNIDVEIMKSHYKRYLPFGLILVALFIGLLMVSIPSGTFKKNVEVKGYAIN 129

Query: 119 GELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +L  +   G      +N E +G VLYT Y    EI+  +LL+++I AI L+ R  R  K
Sbjct: 130 SQLLEVKQNGAEQQPLSNTEALGMVLYTDYLLAFEIAAALLLIAIISAITLVHRGPRKSK 189

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ++ +Q+ ++ +  + ++ +K+ K
Sbjct: 190 RQNVKQQILTHKNQRVELINMKAEK 214


>gi|325924684|ref|ZP_08186122.1| NADH dehydrogenase subunit J [Xanthomonas perforans 91-118]
 gi|325544890|gb|EGD16235.1| NADH dehydrogenase subunit J [Xanthomonas perforans 91-118]
          Length = 220

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 6   TLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116
           AV+V FLF++MMLDID      R + G++    +G++ A         LI   +      
Sbjct: 66  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 121

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204


>gi|78048400|ref|YP_364575.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036830|emb|CAJ24523.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 219

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 5   TLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 64

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116
           AV+V FLF++MMLDID      R + G++    +G++ A         LI   +      
Sbjct: 65  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 181 GEQSRVKAGDRLRMVKMAVEKPV 203


>gi|251773158|gb|EES53711.1| putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum
           ferrodiazotrophum]
          Length = 173

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 35/191 (18%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ Q  FFY F  MA++ + LVVT R  IYS  +L+  FV+ AGLF++L A F+A + L+
Sbjct: 1   MIQQLPFFY-FGGMALVCAILVVTSRVAIYSAMALLGMFVHVAGLFIILEAPFLAGVQLL 59

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V +LF++M+L++    A   +K+          +A  LI          A GE
Sbjct: 60  VYAGAILVLYLFVVMLLNLQGGGATSLQKQTPWA------IALSLI----------AVGE 103

Query: 121 LSRLVFKGN-----------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           L  L+ K N                 N E IG VLYTQY +P E++  +LL++++GAIV 
Sbjct: 104 LGYLLVKTNFYPKLPAIPHPSVPTLGNTETIGMVLYTQYLFPFEVASIVLLIALVGAIV- 162

Query: 164 MLRHRRDIKRQ 174
           M R R   +++
Sbjct: 163 MARGRGRFRQE 173


>gi|56707220|ref|YP_169116.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89257081|ref|YP_514443.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110669690|ref|YP_666247.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315438|ref|YP_764161.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134301255|ref|YP_001121223.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156503295|ref|YP_001429360.1| NADH dehydrogenase I, subunit J [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009473|ref|ZP_02274404.1| NADH dehydrogenase i, j subunit [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187930997|ref|YP_001890981.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224456281|ref|ZP_03664754.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254368317|ref|ZP_04984335.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254368974|ref|ZP_04984987.1| hypothetical protein FTAG_00804 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371436|ref|ZP_04987437.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874058|ref|ZP_05246768.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|290952998|ref|ZP_06557619.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313818|ref|ZP_06804391.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|56603712|emb|CAG44673.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144912|emb|CAJ80260.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320023|emb|CAL08056.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130337|gb|ABI83524.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134049032|gb|ABO46103.1| NADH dehydrogenase I subunit J [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254125|gb|EBA53219.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|151569675|gb|EDN35329.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156253898|gb|ABU62404.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157121895|gb|EDO66065.1| hypothetical protein FTAG_00804 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187711906|gb|ACD30203.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254840057|gb|EET18493.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158328|gb|ADA77719.1| NADH dehydrogenase i, j subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 201

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 14/203 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+  + FY F+ +AII + ++V   NP+ SV ++IF F+  A ++++L   ++A++ +V
Sbjct: 1   MVVTDILFYTFASLAIIFALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAE 118
           VYVGAV+V FLF++ MLD+ +E      ++G +G FF  +  A ++VCA  +  + ++A 
Sbjct: 61  VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYAL--AAVVVCAIFATVISYAAT 112

Query: 119 GELSRLVFKG--NNVENIGKVLYTQYA-YPLEISGFILLLSMIGAIVLMLR-HRRDIKRQ 174
              +  + +G    ++ IG  +++    Y  E+  FILL +M  AI L LR  R+  K  
Sbjct: 113 NVFAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTV 172

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
           D ++Q++    + + MVK+ S  
Sbjct: 173 DPAQQVKVRAKDRLTMVKMPSNN 195


>gi|58582849|ref|YP_201865.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427443|gb|AAW76480.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
          Length = 227

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 13  TLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 72

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELS- 122
           AV+V FLF++MMLDID      R + G++    +G I+A  ++      +   A      
Sbjct: 73  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIMAVAMLAQMVTLIGVKARSATPF 128

Query: 123 ------RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                       +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 129 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 188

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 189 GEQSRVKAGDRLRMVKMAVEKPV 211


>gi|84624715|ref|YP_452087.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577687|ref|YP_001914616.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84368655|dbj|BAE69813.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|188522139|gb|ACD60084.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 220

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 6   TLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELS- 122
           AV+V FLF++MMLDID      R + G++    +G I+A  ++      +   A      
Sbjct: 66  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIMAVAMLAQMVTLIGVKARSATPF 121

Query: 123 ------RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                       +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204


>gi|294624669|ref|ZP_06703339.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666768|ref|ZP_06732002.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292601025|gb|EFF45092.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603429|gb|EFF46846.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 219

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S+ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 5   SIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 64

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116
           AV+V FLF++MMLDID      R + G++    +G++ A         LI   +      
Sbjct: 65  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 181 GEQSRVKAGDRLRMVKMAVEKPV 203


>gi|145932445|ref|YP_001165357.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum]
 gi|110169643|gb|ABG54108.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum]
 gi|188484472|gb|ACD50861.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum]
          Length = 236

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 45/240 (18%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++FFY FS +A+ S+  V+   N IYS F LI  F N+ GL L+   EF++++ ++
Sbjct: 1   MNFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           +YVGA+ V FLF+IMMLD++I + +  K    LG +   I     I     F++FS    
Sbjct: 61  IYVGAITVLFLFVIMMLDVNILI-DKNKINNNLG-YLPIIFLISFIFFLETFIMFSKVFT 118

Query: 118 -----------EGELSRLVF-----KG----------------------NNVENIGKVLY 139
                        E++ L F     KG                       N+E IG++LY
Sbjct: 119 SYYHLINNSFFNKEVNTLFFFKDSMKGTFEIFVDVKPFLKNFINQVDTITNIETIGQILY 178

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           + YA+    +G ILL+++IGA+ L  + +R   +Q I KQL  +   +I    V S K +
Sbjct: 179 SYYAFFFLAAGIILLIALIGAVTLTKKEKRKNFKQKIYKQLSRDSLKAI--FNVNSNKSV 236


>gi|119897696|ref|YP_932909.1| NADH-ubiquinone oxidoreductase subunit J [Azoarcus sp. BH72]
 gi|119670109|emb|CAL94022.1| NADH-ubiquinone oxidoreductase, chain J probable [Azoarcus sp.
           BH72]
          Length = 200

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 114/201 (56%), Gaps = 10/201 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY  + + + +   V+T RNP+++   L+ +F  A G++LLL AEF+A+  ++
Sbjct: 1   MEFKTAVFYFLAAILVFAGLRVITARNPVHAALFLVLSFFTAGGIWLLLQAEFLAITLVM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++    R ++GF     +G L   L+V     ++     +
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLD----RIRQGFWNYLPVGALIGILMVVEMAMVLGGRYFD 116

Query: 121 LSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           L  +          +N   +G+VLYT Y YP E++  +L+++M+ A+ L LR R+  K  
Sbjct: 117 LDSMPAPPPAAADYSNTAELGRVLYTDYVYPFELASLVLVVAMVAAVSLTLRKRKGNKYV 176

Query: 175 DISKQLESNPDNSIVMVKVKS 195
             S Q+    +  + +VK+ +
Sbjct: 177 QPSDQVAVKREGRVELVKMPA 197


>gi|164422216|gb|ABY55189.1| NADH dehydrogenase subunit 6 [Bambusa oldhamii]
          Length = 205

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI+ VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM +I I     EV       G +G  F            I +L       +  + V++ 
Sbjct: 70  MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|81176537|ref|YP_398421.1| nad6 [Triticum aestivum]
 gi|400642|sp|Q02500|NU6M_WHEAT RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|21826|emb|CAA44009.1| NADH dehydrogenase (ubiquinone) [Triticum aestivum]
 gi|78675261|dbj|BAE47686.1| nad6 [Triticum aestivum]
 gi|169649070|gb|ACA62631.1| nad6 [Triticum aestivum]
          Length = 247

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 103/193 (53%), Gaps = 23/193 (11%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI+ VV++
Sbjct: 17  RTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHI 76

Query: 64  GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELI 106
           GA+ V FLF++MM +I I     EV       G +G  F            I +L     
Sbjct: 77  GAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRN 136

Query: 107 VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +  + V++ +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL + 
Sbjct: 137 TTSLRYTVYAGK------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMH 190

Query: 167 HRRDIKRQDISKQ 179
               +KRQD+ ++
Sbjct: 191 RTTKVKRQDVFRR 203


>gi|89280733|ref|YP_514639.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group]
 gi|289065047|ref|YP_003433858.1| NADH dehydrogenase subunit 6 [Oryza rufipogon]
 gi|74100100|gb|AAZ99264.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group]
 gi|74100155|gb|AAZ99318.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|74100209|gb|AAZ99371.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|285026129|dbj|BAI67962.1| NADH dehydrogenase subunit 6 [Oryza rufipogon]
 gi|285026159|dbj|BAI67991.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group]
          Length = 205

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + AGL +LLG +F AMI+ VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFPILVFCDTAGLLILLGLDFSAMISPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM +I I     EV       G +G  F            I +L       +  + V++ 
Sbjct: 70  MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     ++RQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVQRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|54114097|gb|AAV29682.1| NT02FT1745 [synthetic construct]
          Length = 201

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 14/203 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+  + FY F+ +AII + ++V   NP+ SV ++IF F+  A ++++L   ++A++ +V
Sbjct: 1   MVVTVILFYTFASLAIIFALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAE 118
           VYVGAV+V FLF++ MLD+ +E      ++G +G FF  +  A ++VCA  +  + ++A 
Sbjct: 61  VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYAL--AAVVVCAIFATVISYAAT 112

Query: 119 GELSRLVFKG--NNVENIGKVLYTQYA-YPLEISGFILLLSMIGAIVLMLR-HRRDIKRQ 174
              +  + +G    ++ IG  +++    Y  E+  FILL +M  AI L LR  R+  K  
Sbjct: 113 NVFAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTV 172

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
           D ++Q++    + + MVK+ S  
Sbjct: 173 DPAQQVKVRAKDRLTMVKMPSNN 195


>gi|21243423|ref|NP_643005.1| NADH dehydrogenase subunit J [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108975|gb|AAM37541.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 220

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 6   TIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116
           AV+V FLF++MMLDID      R + G++    +G++ A         LI   +      
Sbjct: 66  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 121

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204


>gi|99034365|ref|ZP_01314389.1| hypothetical protein Wendoof_01000807 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 143

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 93/146 (63%), Gaps = 8/146 (5%)

Query: 56  MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           M+ L+VY+GAV V FLF++MMLDID      R ++GF   F +G +   +     +F++ 
Sbjct: 1   MMVLIVYIGAVAVLFLFVVMMLDID----YIRLRQGFAKHFTLGAILCGVFFLIISFVIR 56

Query: 116 SAEGELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKR 173
           S+   +S ++ +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+ ++  +K+
Sbjct: 57  SSTLNISNVINYNANNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKK 116

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q++ KQL  +   S+ +VK K GKG+
Sbjct: 117 QNVLKQLTQSS--SVKLVKAKFGKGV 140


>gi|194033221|ref|YP_002000558.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|60498739|dbj|BAC19862.2| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
          Length = 205

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + AGL +LLG +F AMI LV+Y+GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFFILIFCDTAGLLILLGLDFFAMIFLVIYIGAIAVLFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM +I I     EV       G +G  F            I +L       +  + V++ 
Sbjct: 70  MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N++ +G +LYT Y     +S  ILL++MIGAIVL +     ++RQD+ 
Sbjct: 130 K------VRNWTNLDTLGNLLYTYYFVWFLVSTLILLVAMIGAIVLTMHRTTKVQRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|148266245|ref|YP_001232951.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter
           uraniireducens Rf4]
 gi|146399745|gb|ABQ28378.1| NADH dehydrogenase subunit J [Geobacter uraniireducens Rf4]
          Length = 168

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 104/170 (61%), Gaps = 11/170 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++SLFF + + +A+ISS LV+T +NPI S  SL+  F   A  +++L A F+A I ++VY
Sbjct: 2   LESLFFIIVAAVAVISSILVITCKNPINSALSLVMTFFCLATFYVMLDAPFMAAIQVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA----- 117
            GA++V  +F+IM+L+I  E    +     L    IG+    L++  + + +F +     
Sbjct: 62  AGAIMVLIVFVIMLLNIRTETGR-KTTHAILAGSIIGL----LVLFQTCYFLFRSSLTGN 116

Query: 118 EGEL-SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +G + + LV +  +VE IGK LYT++  P EI+  +LL+++IGA++L  R
Sbjct: 117 KGVMDTALVERVGHVELIGKALYTEFLLPFEITSLLLLVAIIGAVILTKR 166


>gi|291498625|gb|ADE08099.1| nad6-1 [Triticum aestivum]
 gi|291498626|gb|ADE08100.1| nad6-2 [Triticum aestivum]
          Length = 305

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 103/193 (53%), Gaps = 23/193 (11%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI+ VV++
Sbjct: 17  RTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHI 76

Query: 64  GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELI 106
           GA+ V FLF++MM +I I     EV       G +G  F            I +L     
Sbjct: 77  GAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRN 136

Query: 107 VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +  + V++ +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL + 
Sbjct: 137 TTSLRYTVYAGK------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMH 190

Query: 167 HRRDIKRQDISKQ 179
               +KRQD+ ++
Sbjct: 191 RTTKVKRQDVFRR 203


>gi|222053579|ref|YP_002535941.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           FRC-32]
 gi|221562868|gb|ACM18840.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           FRC-32]
          Length = 168

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 15/172 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++SLFF + + +A+ISS LV+T RNPI S  SL+  F   A  +++L A F+A I ++VY
Sbjct: 2   LESLFFLIVAAVAVISSILVITCRNPINSALSLVMTFFCLATFYVMLDAPFMAAIQVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121
            GA++V  +F+IM+L+I  E    +     L    +G+    LI+  + +  F  +G + 
Sbjct: 62  AGAIMVLIVFVIMLLNIRTETGR-KTTHAVLAGSIVGL----LILFQTCY--FLTKGSMT 114

Query: 122 -------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                  + L+ K  +VE IGK LYT +  P EI+  +LL+++IGA++L  R
Sbjct: 115 GLTGAMDTALIEKVGHVELIGKALYTDFLLPFEITSLLLLVAIIGAVILSKR 166


>gi|39995456|ref|NP_951407.1| NADH dehydrogenase I subunit J [Geobacter sulfurreducens PCA]
 gi|39982219|gb|AAR33680.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens PCA]
 gi|298504455|gb|ADI83178.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens KN400]
          Length = 167

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++ FF + + +A+++S LV+T +NPI S  SLI  F   A  +++L A F+A I ++VY
Sbjct: 1   METFFFTIVAAVAVLASILVITCKNPINSALSLILTFFCLATFYVMLDAPFMAAIQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGEL 121
            GA++V  +F+IM+L++  E          LGS  +GI    +L    +   +   +GE+
Sbjct: 61  AGAIMVLIVFVIMLLNVRTEAGRRSSHTVLLGS-LVGIFTLVQLFYVLNRSSLTGNKGEI 119

Query: 122 S-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           S  L+ +  + E IGK LYT +  P E++  +LL+++IGA++L
Sbjct: 120 SPELIHRIGHTEIIGKALYTDFLLPFEVTSILLLVAIIGAVIL 162


>gi|115278547|ref|YP_762337.1| NADH dehydrogenase subunit 6 [Sorghum bicolor]
 gi|114309668|gb|ABI60885.1| NADH dehydrogenase subunit 6 [Sorghum bicolor]
          Length = 271

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 23/187 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+ V 
Sbjct: 5   VLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGAIAVS 64

Query: 70  FLFIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNF 112
           FLF++MM +I I     EV       G +G  F            I +L  +    +  +
Sbjct: 65  FLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLGY 124

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            V++ +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +K
Sbjct: 125 TVYAGK------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVK 178

Query: 173 RQDISKQ 179
           RQD+ ++
Sbjct: 179 RQDVFRR 185


>gi|145932352|ref|YP_001165400.1| NADH dehydrogenase subunit 6 [Phytophthora sojae]
 gi|110169595|gb|ABG54061.1| NADH dehydrogenase subunit 6 [Phytophthora sojae]
          Length = 236

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 45/238 (18%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++FFY FS +A+ S+  V+   N IYS F LI  F N+ GL L+   EF++++ ++
Sbjct: 1   MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           +YVGA+ V FLF+IMMLD+++ + + +    F   +   I     I     F++FS    
Sbjct: 61  IYVGAITVLFLFVIMMLDVNVLIDKNKINNNF--GYLPIIFLISFIFFLETFIMFSKVFT 118

Query: 118 -----------EGELSRLVF-----KG----------------------NNVENIGKVLY 139
                        E++ L F     KG                       N+E IG++LY
Sbjct: 119 SYYHLINNSFFNQEINTLFFFKDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILY 178

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           + YA+   ++G ILL+++IGA+ L  + ++ I +Q+I KQL  N   +I    V S K
Sbjct: 179 SYYAFFFLVAGIILLIALIGAVTLTKKEKKKIFKQNIYKQLSRNSLKAI--FNVHSNK 234


>gi|291280348|ref|YP_003497183.1| NADH-quinone oxidoreductase subunit J [Deferribacter desulfuricans
           SSM1]
 gi|290755050|dbj|BAI81427.1| NADH-quinone oxidoreductase, J subunit [Deferribacter desulfuricans
           SSM1]
          Length = 166

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 100/170 (58%), Gaps = 17/170 (10%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+ +F+AI+S+  ++T  NP++S   ++  F + AG+F+ L AEF+A I ++VY
Sbjct: 1   MEQVAFYILAFLAIVSALFMITRTNPVHSALWMLLTFFSVAGIFVQLDAEFIAAIQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF--------LGSFFIGILAAELIVCASNFMV 114
            GA++V +LF++M+L+         K  GF        +G+    I+  + ++      V
Sbjct: 61  AGAILVLYLFVVMLLN--------PKSHGFIKIPFRYAIGTVVSIIIVIQTLIAVKTTDV 112

Query: 115 FSAEGELSRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
              +G+++  V  +  NV+  GK L+T +  P EI+  +LL++MIGAIVL
Sbjct: 113 LGQKGDITDTVISQYGNVKLFGKALFTDFLVPFEIASILLLVAMIGAIVL 162


>gi|114151579|ref|YP_740380.1| NADH dehydrogenase subunit 6 [Zea perennis]
 gi|102567913|gb|ABF70830.1| NADH dehydrogenase subunit 6 [Zea perennis]
          Length = 209

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM +I I     EV       G +G  F            I +L       +  + V++ 
Sbjct: 70  MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLKYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|114151645|ref|YP_740422.1| NADH dehydrogenase subunit 6 [Zea mays subsp. parviglumis]
 gi|1843454|emb|CAA66370.1| mitochondrial complex I subunit 6 [Zea mays]
 gi|93116052|gb|ABE98685.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays]
 gi|93116096|gb|ABE98728.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays]
 gi|93116144|gb|ABE98775.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays]
 gi|102567978|gb|ABF70862.1| NADH dehydrogenase subunit 6 [Zea mays subsp. parviglumis]
 gi|102579645|gb|ABF70925.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays]
          Length = 220

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM +I I     EV       G +G  F            I +L       +  + V++ 
Sbjct: 70  MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLKYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|260223135|emb|CBA33395.1| NADH-quinone oxidoreductase subunit J [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 260

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 11/180 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+FS + + ++F V+T RNP+++   L+  F  AA +++LL AEF+++  ++VYVGAV+
Sbjct: 8   FYVFSAVLLFAAFRVITARNPVHAALYLVLTFFQAAMIWMLLKAEFLSITLVLVYVGAVM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAEL-IVCASNFMVFSAEGEL 121
           V FLF++MM+DI++E      + GF   F +      ++A E+  V    F V      +
Sbjct: 68  VLFLFVVMMMDINVE----NLRVGFWKHFPLAAIVGVVIALEMAAVLMGGFRVVDDPNAV 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +    + NN + +GK+L+TQY   LE++  ILL++MI         +    +Q + + L+
Sbjct: 124 ATAA-EANNAKELGKLLFTQYLVQLEVAAAILLVAMIXXXXXXXXSKWTQPKQRLRQLLK 182


>gi|11466584|ref|NP_066474.1| NADH dehydrogenase subunit 6 [Rhodomonas salina]
 gi|10444171|gb|AAG17745.1|AF288090_21 NADH dehydrogenase subunit 6 [Rhodomonas salina]
          Length = 207

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/208 (40%), Positives = 119/208 (57%), Gaps = 28/208 (13%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS +  + +F V+  RNPI+S+  L+F F NAA L +LLGA+F+A++ L+VYVGAV 
Sbjct: 8   FYLFSSLICVCAFSVIFSRNPIHSILFLVFLFFNAAALLILLGADFLAILFLIVYVGAVA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCA--------SNFM--- 113
           V FLF++MML       +  K +    +FF G   IL A + +C          NF+   
Sbjct: 68  VLFLFVVMMLS-----GKLIKTK---INFFYGPLVILLAFIFLCEIFLIIEQNLNFLSSN 119

Query: 114 VFSAEGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           ++     L+ L      ++  +NVE IG VLYT + Y   +   ILL++MIGAIVL L  
Sbjct: 120 IYFLNDILNPLFIWKDKIYCLSNVEIIGSVLYTYFFYFFIVGSLILLVAMIGAIVLTLYK 179

Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKS 195
           R D+K Q I KQ + N + SI + K  S
Sbjct: 180 RNDLKTQFIFKQAKKNFEASIQLTKNDS 207


>gi|300122800|emb|CBK23815.2| unnamed protein product [Blastocystis hominis]
          Length = 195

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 114/196 (58%), Gaps = 7/196 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +L+F +F+ + IIS F+ ++V N +Y+V  LI AF ++  +  LL  +++A++ +++Y
Sbjct: 1   MSNLYFNIFASIIIISVFMTISVNNAVYAVLFLILAFFSSMCILFLLNIDYLALMFILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-----SA 117
           +GA+ + FLF++MML I I      K   F+      ++   +++ A  F VF       
Sbjct: 61  IGAITILFLFVVMMLKIKINEKNTTKFISFINIIICCLIVYNVLLNADIFNVFLNNDLVY 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDI 176
               S+L +  +N++ +G+V++T Y +   ++GF+LL+ MI AI+L     R I+R Q +
Sbjct: 121 NDWFSKL-YYVDNIKMLGQVIFTNYYFYFILAGFVLLIGMISAILLSKESTRVIRRYQLV 179

Query: 177 SKQLESNPDNSIVMVK 192
            +Q+  +  N++ +V 
Sbjct: 180 YQQISRDVSNAVFLVH 195


>gi|110225673|ref|YP_665679.1| NADH dehydrogenase subunit 6 [Nephroselmis olivacea]
 gi|6066188|gb|AAF03206.1|AF110138_38 NADH dehydrogenase subunit 6 [Nephroselmis olivacea]
          Length = 197

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 106/176 (60%), Gaps = 7/176 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F +FS +AII   LV+  +NP++SV  LI  F +AAGL L+L  +F AM+ LVVYVGA+ 
Sbjct: 2   FSIFSSLAIICGILVIRAKNPVHSVLFLILVFCHAAGLLLMLDLDFFAMVFLVVYVGAIA 61

Query: 68  VFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAE-LIVCASNF--MVFSAEGELSR 123
           V FLF++MML+I I EV E       LG     I   E L+V   +F  M+ S+   L  
Sbjct: 62  VLFLFVVMMLNIKIEEVYETALPYLPLGGLIGLIFVTEILLVVERDFIPMISSSSLNLQY 121

Query: 124 LVF---KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           + F     + ++ IG+++YT Y +   ++  ILL++MIGAIVL +     +KRQ++
Sbjct: 122 IQFLPETSSTIQAIGELIYTYYFFYFIVASLILLIAMIGAIVLTMYKGAGVKRQEV 177


>gi|118602284|ref|YP_903499.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567223|gb|ABL02028.1| NADH dehydrogenase subunit J [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 202

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 16/207 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FY+ SF  I+SS  ++  RN   +V  L+ AF NAA +++LL AEF+A+  ++
Sbjct: 1   MNSEQIIFYILSFWFIVSSLAMIFSRNAAKAVLFLVLAFFNAASIWILLEAEFLAITLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113
           VYVGAV+V FLF+I ML+ID    +   +  F G   +G++ A +IV   + +       
Sbjct: 61  VYVGAVMVLFLFVIKMLNID----KSTLRAKFTGYLPLGLIVAAIIVAEMSLVLGANQFG 116

Query: 114 --VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
             VFS+     R     +N+  +   LYT Y YP E++  +LL+++I AI L+ R+    
Sbjct: 117 LDVFSSP---ERHGMDYSNITVLAMQLYTTYVYPFELAAVLLLIAIIAAITLVYRNETSR 173

Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKG 198
           K+Q IS+Q+     + + +V +   KG
Sbjct: 174 KKQSISEQVNVQAKDRVRLVSITPSKG 200


>gi|163854294|ref|YP_001633640.1| NADH dehydrogenase subunit 6 [Negombata magnifica]
 gi|163639449|emb|CAM06605.1| NADH dehydrogenase subunit 6 [Negombata magnifica]
          Length = 195

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 32/197 (16%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           F    IIS  +V++  N ++SV  LI +F +A  LF+ L  +F+A+I L+VYVGA+ + F
Sbjct: 8   FCMFLIISGIMVISALNSVHSVLWLIVSFTSAVVLFIFLEVDFIALIFLIVYVGAIAILF 67

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLG-------SFFIGILAAELIVCASNFMVFSA------ 117
           LF+IMML++          RG L         F IG+     +V     + FS       
Sbjct: 68  LFVIMMLNL-------TDLRGLLDMSNYMPVGFIIGV-----VVFFEVLLFFSWGFGDLL 115

Query: 118 EG-ELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           EG +  R  F  K +N++ +G++LYT YAY   ++ FILL++MIGAIVL    R  IK+Q
Sbjct: 116 EGIDYFRWDFLEKISNIQVLGELLYTNYAYLFILASFILLVAMIGAIVLTFSERSQIKKQ 175

Query: 175 D----ISKQLESNPDNS 187
           +    IS++L+   + S
Sbjct: 176 ESFIQISRELDEIKNES 192


>gi|116624762|ref|YP_826918.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116227924|gb|ABJ86633.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 169

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 100/168 (59%), Gaps = 9/168 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++ FY+F+ M +    L +T R+ ++S  SLI + +  AGL+LL  AEF+  + +V
Sbjct: 1   MLTDTILFYIFAVMVLAGGILTITRRSAVHSAISLIVSLLGVAGLYLLQQAEFLFAVQIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           +YVG ++V FLF+IM++++D    +  K+R F   + I ++A  L+     + ++  +G 
Sbjct: 61  LYVGGIMVLFLFVIMLVNLD----QAAKERQFNRQWSIALIAVALVGAQVGYFLYKGKGS 116

Query: 120 ----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
               E+       +NVE +   L+T+Y  P EI+  +LL++++G++V+
Sbjct: 117 FRIAEVIAPAAVTHNVEQVADSLFTEYLLPFEIASILLLVAVVGSVVM 164


>gi|218673002|ref|ZP_03522671.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli GR56]
          Length = 166

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ +++I++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFAAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF-FIGILAAELIVCASNFMVFSAEGEL 121
           VGA++V FLF+IMM+D+   V +     G L +   +G+L  E++V       FS    +
Sbjct: 61  VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLSALVLVGLLGVEMLVLVLWSNRFSVIEPV 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +  +  G+ +  +   L+  Y  P EI+  ILL ++IGAIVL  + + 
Sbjct: 121 A--MRGGDQIRQLSTTLFADYLLPFEIASVILLAALIGAIVLARKEQE 166


>gi|213018784|ref|ZP_03334592.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995735|gb|EEB56375.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 143

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 93/146 (63%), Gaps = 8/146 (5%)

Query: 56  MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           M+ ++VY+GAV V FLF++MMLDID      R ++GF     +G +   +     +F++ 
Sbjct: 1   MMVMIVYIGAVAVLFLFVVMMLDID----YIRLRQGFAKHCTLGAMLCVVFFLVISFVIR 56

Query: 116 SAEGELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKR 173
           S+   +S ++ +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+ ++  +K+
Sbjct: 57  SSAPNISNVINYNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKK 116

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q++ KQL  +  +S+ +VK K GKG+
Sbjct: 117 QNVLKQLTQS--SSVKLVKAKFGKGV 140


>gi|289667370|ref|ZP_06488445.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 194

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 106/183 (57%), Gaps = 12/183 (6%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++VYVG
Sbjct: 6   TIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116
           AV+V FLF++MMLDID      R + G++    +G++ A         LI   S      
Sbjct: 66  AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRSATPF 121

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181

Query: 177 SKQ 179
            +Q
Sbjct: 182 GEQ 184


>gi|114151611|ref|YP_740454.1| NADH dehydrogenase subunit 6 [Zea luxurians]
 gi|110287607|gb|ABG65653.1| NADH dehydrogenase subunit 6 [Zea luxurians]
          Length = 375

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 23/184 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+ V 
Sbjct: 5   VLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGAIAVS 64

Query: 70  FLFIIMMLDIDI-EVAEPRKK----RGFLGSFF------------IGILAAELIVCASNF 112
           FLF++MM +I I E+ E   +     G +G  F            I +L       +  +
Sbjct: 65  FLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLKY 124

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            V++ +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +K
Sbjct: 125 TVYAGK------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVK 178

Query: 173 RQDI 176
           RQD+
Sbjct: 179 RQDV 182


>gi|332662322|ref|YP_004445110.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331136|gb|AEE48237.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 165

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 99/169 (58%), Gaps = 7/169 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+ S +AII +   V  RN +YSV SL+  F   AG++L L AEFVA++ ++VY
Sbjct: 1   MDQVIFYILSTIAIIGALSTVVSRNAMYSVLSLVVTFFALAGIYLQLNAEFVAIVHIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCAS-NFMVFSAEG 119
            GA++V FLF++MML+++      RK     +L +  +GI+ A L+  AS N  +  A G
Sbjct: 61  AGAIMVLFLFVVMMLNLNTVTVTIRKNPLIKYL-AVLVGIIMAALLGFASMNTALPIARG 119

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             S  V     V+ +GK+L+ +Y  P E+   +L+ +M+G IVL  +  
Sbjct: 120 NTSAEV---GTVKVLGKMLFNEYLLPFELISVLLIATMVGVIVLTKKEE 165


>gi|58201991|gb|AAW67046.1| NADH dehydrogenase subunit 6 [Phytophthora infestans]
 gi|58202038|gb|AAW67092.1| NADH dehydrogenase subunit 6 [Phytophthora infestans]
          Length = 236

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 45/240 (18%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++FFY FS +A+ S+  V+   N IYS F LI  F N+ GL L+   EF++++ ++
Sbjct: 1   MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           +YVGA+ V FLF+IMMLD+++ + + +    F   +   I     I     F++FS    
Sbjct: 61  IYVGAITVLFLFVIMMLDVNVLIDKNKINNNF--GYLPIIFLISFIFFLETFVMFSKVFT 118

Query: 118 -----------EGELSRLVF-----KG----------------------NNVENIGKVLY 139
                        E++ L F     KG                       N+E IG++LY
Sbjct: 119 SYYHLINNSFFNQEVNTLFFFRDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILY 178

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
           + YA+    +G ILL+++IGA+ L  + ++   +Q+I KQL  N   +I    V S K I
Sbjct: 179 SYYAFFFLAAGIILLIALIGAVTLTKKEKKKNFKQNIYKQLSRNSLKAI--FNVNSHKFI 236


>gi|9695394|ref|NP_037616.1| NADH dehydrogenase subunit 6 [Phytophthora infestans]
 gi|6692646|gb|AAF24789.1|U17009_22 NADH dehydrogenase subunit 6 [Phytophthora infestans]
 gi|58012152|gb|AAW62560.1| NADH dehydrogenase subunit 6 [Phytophthora infestans]
          Length = 236

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 43/225 (19%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++FFY FS +A+ S+  V+   N IYS F LI  F N+ GL L+   EF++++ ++
Sbjct: 1   MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           +YVGA+ V FLF+IMMLD+++ + + +    F   +   I     I     F++FS    
Sbjct: 61  IYVGAITVLFLFVIMMLDVNVLIDKNKINNNF--GYLPIIFLISFIFFLETFVMFSKVFT 118

Query: 118 -----------EGELSRLVF-----KG----------------------NNVENIGKVLY 139
                        E++ L F     KG                       N+E IG++LY
Sbjct: 119 SYYHLINNSFFNQEVNTLFFFRDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILY 178

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
           + YA+    +G ILL+++IGA+ L  + ++   +Q+I KQL  N 
Sbjct: 179 SYYAFFFLAAGIILLIALIGAVTLTKKEKKKNFKQNIYKQLSRNS 223


>gi|313672287|ref|YP_004050398.1| NADH dehydrogenase subunit j [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939043|gb|ADR18235.1| NADH dehydrogenase subunit J [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 166

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 102/170 (60%), Gaps = 17/170 (10%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L FY+ +F+AIISS  ++T  NP++S   ++  F + AG+F+ L AEF+A I ++VY
Sbjct: 1   MEQLGFYILAFVAIISSLFMITRENPVHSALWMLLTFFSVAGIFVQLNAEFIAAIQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG---SFFIGILAA-----ELIVCASNFMV 114
            GA++V +LF++M+L+         K +GF+     + +GI+A+     ++++   +  V
Sbjct: 61  AGAILVLYLFVVMLLN--------PKSKGFIKIPFRYALGIVASFVVLIQILITLQSANV 112

Query: 115 FSAEGELSRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
               G+ +  ++ K  NV+  G  L+  Y  P EI   +LL++MIGAIVL
Sbjct: 113 IGRSGQYTAEIYEKYGNVKIFGYELFNNYLVPFEIVSVMLLVAMIGAIVL 162


>gi|11497476|ref|NP_042266.1| NADH dehydrogenase (ubiquinone), subunit 6 [Prototheca wickerhamii]
 gi|3122569|sp|Q37626|NU6M_PROWI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|467867|gb|AAD12654.1| NADH dehydrogenase (ubiquinone), subunit 6 [Prototheca wickerhamii]
          Length = 207

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 114/194 (58%), Gaps = 26/194 (13%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+FS + +IS  LV+  RNP++SV  L+  F NAAGL +LLG +F A+I LVVYVGA+ 
Sbjct: 5   FYIFSSLTLISGSLVIQARNPVHSVLFLVLVFFNAAGLLVLLGLDFFALIFLVVYVGAIA 64

Query: 68  VFFLFIIMMLDIDI-EVAEPRKKR----GFLGSFF------------IGILAAELIVCAS 110
           V FLF++MML+I I E++E R +     G LG  F            I +L+ ++     
Sbjct: 65  VLFLFVVMMLNIRITEISEKRLRYLPVGGVLGVLFLFEICILIDNDCIPLLSYDI----E 120

Query: 111 NFMVFSAEGELSRLVFK-----GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
           N  + +   +LS + ++      + ++ +G +LYT Y Y   ++  ILL++MIGAIVL +
Sbjct: 121 NTALLANYNQLSFIDWRMYLSTSHTIDALGSLLYTYYFYFFLVASLILLVAMIGAIVLTM 180

Query: 166 RHRRDIKRQDISKQ 179
           +    IKRQ +  Q
Sbjct: 181 QKGIRIKRQQVFLQ 194


>gi|149909812|ref|ZP_01898463.1| putative oxidoreductase [Moritella sp. PE36]
 gi|149807144|gb|EDM67100.1| putative oxidoreductase [Moritella sp. PE36]
          Length = 190

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 99/186 (53%), Gaps = 14/186 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+  FF L + +AI +  LVV  RNPI+S  SL+  FV  A LF+LLG+ F+A+I L VY
Sbjct: 1   MEQQFFILLALVAIGTGLLVVVARNPIHSALSLVACFVQIAALFVLLGSPFLAVIQLFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAEGE 120
           VGA++V FLF+IMMLD+  E       R    S FI  G + A + + A    +     +
Sbjct: 61  VGAIMVLFLFVIMMLDVRKEA----HGRFINNSRFIQKGAIPAIVALLALATELLFLLSQ 116

Query: 121 LSRL--------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            SRL        V      + +   L+  +  P E++  ILL+++IGA+VL   +  + K
Sbjct: 117 SSRLHAVMTTQSVIGDEPTKQLSLTLFRDFLLPFEVASVILLVALIGAVVLAQSNGTNHK 176

Query: 173 RQDISK 178
             +  K
Sbjct: 177 PSEHKK 182


>gi|332968225|gb|EGK07302.1| NADH-quinone oxidoreductase subunit J [Kingella kingae ATCC 23330]
          Length = 215

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 115/196 (58%), Gaps = 7/196 (3%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+F+ + +  +   VT +NP+++   L+  F  +A ++LL+ AEF+ +  +VVYVGA
Sbjct: 6   VLFYMFAAIILYGALQTVTAKNPVHATLHLVLTFCVSAMMWLLMQAEFLGITLVVVYVGA 65

Query: 66  VIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIVC--ASNFMVFSAEGEL 121
           V+V FLF++MML+ID E  E RK   R    +  +G+L A +++    +     +  G +
Sbjct: 66  VMVLFLFVVMMLNIDAE--EMRKGFWRHAPAALTVGVLMAAVLIAVLVAPDTALNQFGLM 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             +    +NV ++GK LYT Y +  E++  +L+L M+ AI L+ R   + KR D + Q++
Sbjct: 124 KDIPADYSNVRDLGKQLYTTYVWQFELAAVLLVLGMVAAIALVHRKSTNPKRIDPADQVK 183

Query: 182 SN-PDNSIVMVKVKSG 196
            N  +  + MVK++S 
Sbjct: 184 VNAAEGRMRMVKMESA 199


>gi|256425959|ref|YP_003126612.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga
           pinensis DSM 2588]
 gi|256040867|gb|ACU64411.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga
           pinensis DSM 2588]
          Length = 167

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 100/170 (58%), Gaps = 9/170 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q + F + S ++IIS+  V+  +NP+ SV  LI  F   AG +++L A+F+A++ ++
Sbjct: 3   MSLQQIVFGVLSIISIISALGVILSKNPVTSVLCLIVTFFTIAGHYIMLNAQFLAVVHII 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V FLF+IM+++++ E+ EP +KR +L   + G  A          +    E +
Sbjct: 63  VYAGAIMVLFLFVIMLMNLNAEI-EP-QKRNWLK--YAG--AISGGALLLVLLGALREAD 116

Query: 121 LSRLVFKGNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           ++ L     +   + N+GK L+ QY  P E+S  + L +M+GA+V+  R 
Sbjct: 117 VTPLQPGSTDIGLISNLGKTLFNQYVVPFEVSSILFLSAMVGAVVIGKRE 166


>gi|299830440|ref|YP_003734811.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
 gi|299830499|ref|YP_003734870.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
 gi|269810817|gb|ACZ43846.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
 gi|269810876|gb|ACZ43905.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
 gi|269812130|gb|ACZ44428.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
 gi|269812189|gb|ACZ44487.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
          Length = 213

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 22/201 (10%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A+ S+  V+   N IYS F LI  FVN+ GL L+   EF++++ +++YVGA+ V FLF+I
Sbjct: 15  ALTSAIFVIYSTNTIYSAFFLILVFVNSTGLLLISEIEFISIMLIIIYVGAITVLFLFVI 74

Query: 75  MMLDIDIEVAEPRKKR-GFLGSFFI--GILAAELIVCASNFMVFSAEGELSRLVFKGN-- 129
           MMLDI++ + +      G+L   F+   +   E  V  S   +F+    L    F  N  
Sbjct: 75  MMLDINVLIDKNNNNNFGYLPIIFLISFVFFLETFVMFSK--IFTTYYHLIEQSFFKNDL 132

Query: 130 -------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR--DIKRQ 174
                        N+E IG++LY+ YA+    +G ILL+++IGA+ L  + ++  +   +
Sbjct: 133 FYNQVIYQLDNITNIETIGQILYSYYAFFFLAAGIILLIALIGAVTLTKKEKKKQNFLTK 192

Query: 175 DISKQLESNPDNSIVMVKVKS 195
           ++ KQL  N   ++  +K K+
Sbjct: 193 NLYKQLSRNSLQAVFNIKNKN 213


>gi|189426178|ref|YP_001953355.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter
           lovleyi SZ]
 gi|189422437|gb|ACD96835.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter
           lovleyi SZ]
          Length = 170

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 103/174 (59%), Gaps = 15/174 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + S+FF L + +AI+S+ +VVT +NPI S  SL+  F   A  + +L A F+A + ++
Sbjct: 1   MDISSVFFALVTVVAIVSALMVVTCKNPINSALSLVLTFFCLATYYAMLNAPFMAAVQII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V  +F IM+L+I ++  +    +  LGS  IGI  A L++      +F   G+
Sbjct: 61  VYAGAIMVLIVFTIMLLNIRVDANKKGSHQIALGS-VIGI--ATLLLSG----LFLTRGK 113

Query: 121 LSR--------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +S+        L+    + E IGKV++T +  P E++  +LL++++GA++L  R
Sbjct: 114 VSQPVGQITSELINSKGHTELIGKVMFTDFLLPFEVTSILLLVAIVGAVILAKR 167


>gi|88607226|ref|YP_505038.1| NADH dehydrogenase I, J subunit [Anaplasma phagocytophilum HZ]
 gi|88598289|gb|ABD43759.1| NADH dehydrogenase I, J subunit [Anaplasma phagocytophilum HZ]
          Length = 201

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 115/201 (57%), Gaps = 12/201 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F+ F+ M + S+  VV   NP+Y+V SLI  F  ++ LF+LLGAE VAM+ +VVY
Sbjct: 1   MVGFLFFCFAGMVVFSAVAVVISSNPVYAVLSLILTFFISSVLFILLGAELVAMLLVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD+D      +   GF+  + I + LA  L  CA+ + +F  +   
Sbjct: 61  VGAVAVLFLFVVMMLDMDF----VKSSHGFVRYYPICVALATALFGCAT-YAIFHTKAAF 115

Query: 122 SRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQD 175
            R + +       NV  IG  +YT+Y Y  ++SG +LL++ IGA+VL +R +    ++Q+
Sbjct: 116 IRGIGEAGASAMGNVFLIGSQMYTKYFYAFQMSGILLLVASIGALVLTVRSKAVKSRKQN 175

Query: 176 ISKQLESNPDNSIVMVKVKSG 196
           +  Q++ +    +    V  G
Sbjct: 176 VYAQVDRSSKVELCSPAVCKG 196


>gi|56791566|gb|AAW30321.1| NADH dehydrogenase subunit 6 [Philodendron hederaceum var.
           oxycardium]
          Length = 182

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+   FLF++
Sbjct: 6   ALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLILLGLDFSAMIFPVVHIGAIAASFLFVV 65

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSRLVFKG 128
           MM +I I        R    S  IG IL  E+     N              L   V+ G
Sbjct: 66  MMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYTVYAG 125

Query: 129 -----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                 N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 126 KVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 181


>gi|115278617|ref|YP_762486.1| NADH dehydrogenase subunit 6 [Tripsacum dactyloides]
 gi|114432108|gb|ABI74657.1| NADH dehydrogenase subunit 6 [Tripsacum dactyloides]
          Length = 333

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 27/187 (14%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+ V 
Sbjct: 5   VLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGAIAVS 64

Query: 70  FLFIIMMLDIDI-EVAEPRKK----RGFLGSFF------------IGILAAELIVCASNF 112
           FLF++MM +I I E+ E   +     G +G  F            I +L       +  +
Sbjct: 65  FLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLGY 124

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI- 171
            V++ +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL + HR  I 
Sbjct: 125 TVYAGK------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTM-HRTTIH 177

Query: 172 --KRQDI 176
             KRQD+
Sbjct: 178 MVKRQDV 184


>gi|258593428|emb|CBE69767.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           (NDH-1, chain J) [NC10 bacterium 'Dutch sediment']
          Length = 168

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 97/168 (57%), Gaps = 4/168 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L F   + MA++++ LV+ +RNP+Y   SL+  F+  +G++LLL A+F+A++ ++VY
Sbjct: 1   MEWLVFVPLAAMALVTAALVIVLRNPVYCALSLVGTFLALSGIYLLLQAQFIAVVQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
            GA++V FLF++M+LD+  E+       R +          +L    I   SN       
Sbjct: 61  AGAIMVLFLFVVMLLDLGHELPAWLQRDRSRFLLGVGAAALLLLELAIPIGSNDSRAPQG 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
              S +V    N + +G++L+T +  P EI+  ILL+++IGA+VL  R
Sbjct: 121 PYTSEVVGAIGNAQLVGRLLFTDFLIPFEITSVILLIAIIGAMVLARR 168


>gi|200004048|ref|YP_002221382.1| NADH dehydrogenase subunit 6 [Blastocystis sp. NandII]
 gi|156617373|gb|ABU87591.1| NADH dehydrogenase subunit 6 [Blastocystis sp. NandII]
          Length = 194

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 109/192 (56%), Gaps = 7/192 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF+LF+ + IIS F+ ++V N IY+V  LI AF ++  +  LL  +++A++ +++YVGA+
Sbjct: 4   FFFLFASIIIISVFMTISVNNAIYAVLFLILAFFSSMCILFLLNVDYLALMFILIYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-----SAEGEL 121
            + FLF++MML I I      K   F+      ++   +++    F VF     +     
Sbjct: 64  TILFLFVVMMLKIKINEKNTTKFISFINIIICCLIIYNVLLNTDIFNVFLNTDLTYTNWF 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDISKQL 180
           S L +  +N++ +G+V++  Y +   +SGF+LL+ MI AI+L     + ++R Q + +QL
Sbjct: 124 SNL-YYIDNIKMLGQVIFNNYYFYFILSGFVLLIGMISAILLSKESNKVVRRYQLVYQQL 182

Query: 181 ESNPDNSIVMVK 192
                N++ +V 
Sbjct: 183 SREVSNAVFLVH 194


>gi|197120278|ref|YP_002140705.1| NADH dehydrogenase I subunit J [Geobacter bemidjiensis Bem]
 gi|197089638|gb|ACH40909.1| NADH dehydrogenase I, J subunit [Geobacter bemidjiensis Bem]
          Length = 167

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 97/163 (59%), Gaps = 3/163 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+S+FF + + +A+ISS LVVT +NPI S  SL+  F   A  +++L A F+A   ++VY
Sbjct: 1   MESIFFLVVATVAVISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGEL 121
            GA++V  +F+IM+L++  E  +      F GS  +G+ A  + +   S   +  A G +
Sbjct: 61  AGAIMVLIIFVIMLLNVKAESGKRGSHAVFAGS-VLGLFALFQTVWFLSKGSMTGATGTM 119

Query: 122 SRL-VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            +  +    +VE IGK L+T +  P EI+  +LL +++GA++L
Sbjct: 120 DKAQIISVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVIL 162


>gi|224109646|ref|XP_002333226.1| predicted protein [Populus trichocarpa]
 gi|224144011|ref|XP_002336100.1| predicted protein [Populus trichocarpa]
 gi|222835539|gb|EEE73974.1| predicted protein [Populus trichocarpa]
 gi|222872374|gb|EEF09505.1| predicted protein [Populus trichocarpa]
          Length = 201

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 21/181 (11%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F N +GL +LLG +F AMI  VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSR 123
           MM  I I        R    S  IG     LI     F +   E             L  
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRY 124

Query: 124 LVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            V+ G      N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI +
Sbjct: 125 TVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFR 184

Query: 179 Q 179
           +
Sbjct: 185 R 185


>gi|325954443|ref|YP_004238103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Weeksella
           virosa DSM 16922]
 gi|323437061|gb|ADX67525.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Weeksella
           virosa DSM 16922]
          Length = 171

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 104/181 (57%), Gaps = 16/181 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ + FY+ + + ++S+ L+V  RNPI+S+  LI  F   +G ++LL A+F+A++ ++
Sbjct: 1   MTIEEILFYVLAGLTVLSALLMVFSRNPIHSILYLIITFFCISGHYILLNAQFLAVVNII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIE---VAEPRK-KRGFLGSFFIGILAAELIV--CASNFMV 114
           VY GA++V FLF++M+++++ E      P K     L S    IL   +I         V
Sbjct: 61  VYAGAIMVLFLFVVMLMNLNSEKKSFGTPIKITVASLVSLLFIILTVGIITENGTPQTQV 120

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             A+GE+         +EN+G VLY++Y  P E+S  + + +MIGA++L    ++D +  
Sbjct: 121 EMAKGEIGL-------IENLGSVLYSEYVLPFELSSILFISAMIGAVIL---SKKDKELL 170

Query: 175 D 175
           D
Sbjct: 171 D 171


>gi|162279922|ref|NP_064048.2| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris]
 gi|323435072|ref|YP_004222290.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima]
 gi|87248042|gb|ABD36075.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris]
 gi|148491425|dbj|BAA99358.2| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris]
 gi|317905725|emb|CBJ14110.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima]
 gi|319439805|emb|CBJ17517.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima]
          Length = 205

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 23/185 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA+ V FL
Sbjct: 7   SSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66

Query: 72  FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114
           F++MM  I I     EV       G +G  F            I +L  +    +  + V
Sbjct: 67  FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTV 126

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++ +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQ 179
           D+ ++
Sbjct: 181 DVFRR 185


>gi|329118914|ref|ZP_08247609.1| NADH-quinone oxidoreductase subunit J [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464942|gb|EGF11232.1| NADH-quinone oxidoreductase subunit J [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 218

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 113/202 (55%), Gaps = 17/202 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY  + + +  +   VTV+NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MSFQLIMFYTLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGIL--AAELIVCASNFMVFS 116
           VYVGAV+V FLF++MML+ID+E  E RK   R    +  +G+L   A +++  S     +
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDVE--EMRKGFWRNAPVAATVGVLMAVALILILVSPKTNLA 118

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           A G +  +    +NV  +G+ +YT Y  P E++  +LLL M+ AI L+ R   + KR D 
Sbjct: 119 AFGAMVDVPADHSNVRELGRQIYTTYMLPFELAAVLLLLGMVAAIALVHRKSNNPKRMDP 178

Query: 177 SKQLESNPDNSIVMVKVKSGKG 198
           ++Q           VKV + KG
Sbjct: 179 AEQ-----------VKVDASKG 189


>gi|284039951|ref|YP_003389881.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma
           linguale DSM 74]
 gi|283819244|gb|ADB41082.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma
           linguale DSM 74]
          Length = 184

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 5/156 (3%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S+  VVT RNPIYSV +LI  F   +G ++LL A+F+A + ++VY GA++V FLF IM L
Sbjct: 28  SAIGVVTARNPIYSVLALIATFFCLSGHYVLLNAQFLAAVNIIVYAGAIMVLFLFTIMFL 87

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-GELSRLVFKGNN--VENI 134
           ++  E  E +     + S  +G +   +I+  + F   SA+   +S   F      VEN+
Sbjct: 88  NLRKEDEESKTNLTKMASVVVGGML--MIMLITIFRAKSAQVPTVSATSFSAKTGLVENL 145

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G++LY+ Y  P E++  + L++M+GA++L  R   D
Sbjct: 146 GQLLYSDYILPFELASVLFLVAMVGAVMLGKREAGD 181


>gi|307101736|ref|YP_003875484.1| NADH dehydrogenase subunit 6 [Silene latifolia]
 gi|301338031|gb|ADK73323.1| NADH dehydrogenase subunit 6 [Silene latifolia]
          Length = 205

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 23/185 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA+ V FL
Sbjct: 7   SSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66

Query: 72  FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114
           F++MM  I I     EV       G +G  F            I +L  +    +  + V
Sbjct: 67  FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTV 126

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++ +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQ 179
           D+ ++
Sbjct: 181 DVFRR 185


>gi|78224536|ref|YP_386283.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter
           metallireducens GS-15]
 gi|78195791|gb|ABB33558.1| NADH dehydrogenase subunit J [Geobacter metallireducens GS-15]
          Length = 167

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 97/163 (59%), Gaps = 3/163 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++ FF + + +A+++S LV+T +NPI S  SLI  F   A L++ L A F+A I ++VY
Sbjct: 1   METFFFMIVAAVAVLASILVITCKNPINSALSLILTFFCLATLYVTLDAPFMAAIQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGEL 121
            GA++V  +F+IM+L++  E           GS  IG+ +  +L    +   +   +G +
Sbjct: 61  AGAIMVLIVFVIMLLNVRTESGRRSSHSVLFGS-LIGLFSLFQLFYLFNRSSLTGQKGAI 119

Query: 122 -SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            S L+ K  + E IGK LYT +  P E++  +LL+++IGA+VL
Sbjct: 120 DSALINKVGHTELIGKALYTDFLLPFEVTSILLLVAIIGAVVL 162


>gi|296040749|gb|ADG85342.1| NADH dehydrogenase subunit 6 [Silene latifolia]
          Length = 190

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 23/185 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA+ V FL
Sbjct: 7   SSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66

Query: 72  FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114
           F++MM  I I     EV       G +G  F            I +L  +    +  + V
Sbjct: 67  FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTV 126

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++ +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQ 179
           D+ ++
Sbjct: 181 DVFRR 185


>gi|320148706|emb|CBJ23344.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima]
          Length = 205

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 23/185 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA+ V FL
Sbjct: 7   SSLALVSGLMVVRAQNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66

Query: 72  FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114
           F++MM  I I     EV       G +G  F            I +L  +    +  + V
Sbjct: 67  FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTV 126

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++ +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQ 179
           D+ ++
Sbjct: 181 DVFRR 185


>gi|313206206|ref|YP_004045383.1| NADH dehydrogenase subunit j [Riemerella anatipestifer DSM 15868]
 gi|312445522|gb|ADQ81877.1| NADH dehydrogenase subunit J [Riemerella anatipestifer DSM 15868]
 gi|315023109|gb|EFT36122.1| NADH-ubiquinone oxidoreductase chain J [Riemerella anatipestifer
           RA-YM]
 gi|325336347|gb|ADZ12621.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Riemerella
           anatipestifer RA-GD]
          Length = 165

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 103/171 (60%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+ S +A+IS+   V  +NP+YS+ SL+  F + AGL++LL A+F+ ++ ++VY
Sbjct: 1   MEQIVFYIISGLAVISAIYFVAAKNPLYSILSLVITFFSIAGLYILLNAQFLGIVQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GA++V FL+++MML++  E  E +K     F G F  G+L    +     ++    E  
Sbjct: 61  AGAIMVLFLYVLMMLNLK-EKDEGKKNNLMKFAGIFSAGLLLVGFVGALRGYV--GNELP 117

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
           ++ +       +N+G++L+ +Y  P E++  ++L  ++GA+++    ++D+
Sbjct: 118 VTEITEGVGLTKNLGRLLFNEYVLPFELASILILSGIVGAVLI---GKKDL 165


>gi|134095022|ref|YP_001100097.1| NADH dehydrogenase I subunit J [Herminiimonas arsenicoxydans]
 gi|133738925|emb|CAL61972.1| NADH-quinone oxidoreductase subunit J (NADH dehydrogenase I subunit
           J) (NDH-1 subunit J) [Herminiimonas arsenicoxydans]
          Length = 213

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 113/199 (56%), Gaps = 8/199 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + + ++  V+T  NP+++   L+ +F  AA L++LL AEF++++ ++
Sbjct: 1   MEFTTVLFYVFSAILVFAAIRVITDSNPVHAALFLVLSFCTAAALWMLLKAEFLSIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----S 116
           VYVGAV+V FLF++MM+DI +       + GF G   +      +IV     ++F     
Sbjct: 61  VYVGAVMVLFLFVVMMVDIKLS----NVREGFWGYLPLAATIGVVIVLEMAAVLFRGFWK 116

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           A   +        N + +GK++YTQY Y  E++  +LLL+M+ A+ L +R R+D K    
Sbjct: 117 AHTHVPEAAAMIGNTKELGKLIYTQYLYAFELAALLLLLAMVAAVALTMRKRKDTKYFAP 176

Query: 177 SKQLESNPDNSIVMVKVKS 195
              ++    + + +VK+K+
Sbjct: 177 GDAVKVKSGDRLRVVKMKA 195


>gi|95928437|ref|ZP_01311185.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135708|gb|EAT17359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Desulfuromonas acetoxidans DSM 684]
          Length = 170

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q  FFYL +F+A++S F V++ +NPI S  SL+  F   A  +++L A F+A + ++VY
Sbjct: 4   LQLFFFYLVAFVAVVSGFCVISCKNPINSAISLVMTFFCLAIFYVMLHAPFMAAVQIMVY 63

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGEL 121
            GA++V  +F++M+L+   EV   R +    G+F   I +  +++V   +  V    G +
Sbjct: 64  AGAIMVLIIFVMMLLNQGSEVIA-RYRHAVTGAFIFAIVMLVQIVVILKDGGVSGPVGPI 122

Query: 122 SRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +  V +   +VE IGK ++T +  P EI+  +LL++++GA+VL  R 
Sbjct: 123 NGDVVQSVGHVELIGKAMFTDFLLPFEIASILLLVAIVGAVVLAKRE 169


>gi|253702586|ref|YP_003023775.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M21]
 gi|251777436|gb|ACT20017.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M21]
          Length = 167

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 96/163 (58%), Gaps = 3/163 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+S+FF + + +A+ISS LVVT +NPI S  SL+  F   A  +++L A F+A   ++VY
Sbjct: 1   MESIFFLVVAAVAVISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGEL 121
            GA++V  +F+IM+L++  E  + R     +    +G+ A  + +   S   +  A G +
Sbjct: 61  AGAIMVLIIFVIMLLNVKAESGK-RGSHAVIAGSVLGLFALFQTVWFISKGSMTGATGTM 119

Query: 122 SRL-VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            +  +    +VE IGK L+T +  P EI+  +LL +++GA++L
Sbjct: 120 DKAQIVSVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVIL 162


>gi|255037826|ref|YP_003088447.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter
           fermentans DSM 18053]
 gi|254950582|gb|ACT95282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter
           fermentans DSM 18053]
          Length = 172

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 98/175 (56%), Gaps = 16/175 (9%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFY  SF+ I+S+ +VV  RNPI+SV  LI  F   +G ++LL A+F+A + ++VY GA+
Sbjct: 7   FFYFLSFLTILSAVMVVVSRNPIHSVLYLILTFFTLSGHYILLNAQFLAAVNIIVYAGAI 66

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFL------GSFFIGILAAELIVCASNFMVFSAEGE 120
           +V FLF+IM L++  +  E +     +      G+ F+ +  A        F   + + +
Sbjct: 67  MVLFLFVIMFLNMKQDQEESKTNLTKIAATIVGGTVFVILFGAYRKTAIEPFNPQTYDSQ 126

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +         +E++G +L+  Y  P E++  +LL++M+GA++L    +R+I  + 
Sbjct: 127 IGM-------IESLGHMLFRDYLLPFELASILLLVAMVGAVLL---GKREIGERH 171


>gi|238023175|ref|ZP_04603601.1| hypothetical protein GCWU000324_03101 [Kingella oralis ATCC 51147]
 gi|237865558|gb|EEP66698.1| hypothetical protein GCWU000324_03101 [Kingella oralis ATCC 51147]
          Length = 217

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 103/188 (54%), Gaps = 12/188 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY  + + + S+   VT +NP+++   L+  F  +A  +LL+ AEF+ +  +VVYVGA
Sbjct: 6   ILFYTLAAIILFSALKTVTAKNPVHAALWLVLTFCMSAITWLLMQAEFLGITLVVVYVGA 65

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE------- 118
           V+V FLF++MML+IDIE       R    +  +G+L A L++     M+F A        
Sbjct: 66  VMVMFLFVVMMLNIDIEAMRQGFWRHAPAALTVGVLMAALLI-----MIFVAPDTNLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    +NV ++G  +YT Y  P E++  +L+L M+ AI L+ R     K  D + 
Sbjct: 121 GAMKDIPADYSNVRDLGTQIYTTYLLPFELASVLLVLGMVAAIALVHRKSTRTKYMDPAL 180

Query: 179 QLESNPDN 186
           Q+  NP+ 
Sbjct: 181 QVRVNPNE 188


>gi|164421017|ref|YP_001648538.1| NADH dehydrogenase subunit 6 [Iotrochota birotulata]
 gi|158938947|gb|ABW83873.1| NADH dehydrogenase subunit 6 [Iotrochota birotulata]
          Length = 183

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 95/169 (56%), Gaps = 4/169 (2%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           FS   I    +V++  N ++SV   I AF++A  LF+ L  +F+A+I L+VYVGA+ + F
Sbjct: 8   FSMSLIFXGIMVISALNSVHSVLWXIVAFISAXVLFIFLEVDFIALIFLIVYVGAIAILF 67

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS--RLVF-- 126
           LF+IMML++                F IG++    ++  S++ V    G  S  R  F  
Sbjct: 68  LFVIMMLNLTDLKGLLDMSNYMPAGFMIGLVVFFEVLIYSSWGVSDLSGGRSYFRWDFIE 127

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           K  N++ +G +LYT YAY   ++ FILL++MIG IVL      +IKRQ+
Sbjct: 128 KVTNIQGLGCILYTDYAYLFILASFILLVAMIGVIVLTFSISAEIKRQE 176


>gi|112253907|ref|YP_717162.1| NADH dehydrogenase subunit 6 [Brassica napus]
 gi|37591109|dbj|BAC98911.1| NADH dehydrogenase subunit 6 [Brassica napus]
          Length = 205

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 23/185 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI LVVY+GA+ V FL
Sbjct: 7   SSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66

Query: 72  FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114
           F++MM  I I     EV       G +G  F            I +L  +    +  + V
Sbjct: 67  FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTV 126

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++ +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQ 179
           D+ ++
Sbjct: 181 DVFRR 185


>gi|327398406|ref|YP_004339275.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hippea
           maritima DSM 10411]
 gi|327181035|gb|AEA33216.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hippea
           maritima DSM 10411]
          Length = 167

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 98/172 (56%), Gaps = 7/172 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+++ FY+ + + +  +  V+  +NP  +   ++ AF   AGLF++L A+F AM+ L+VY
Sbjct: 1   MEAIVFYIIAILTVGGALGVLLSKNPYRAALFMVLAFFGIAGLFVMLHAQFNAMLQLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMV-FSAEGE 120
            GA+ V     +M+++        R    +  + FIGI L A+LI  A  F +  S  G+
Sbjct: 61  AGAIAVMITLTMMVMNRRTLEGLKRFNSQWYWAAFIGIGLLADLIALAYKFKIDLSNAGK 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
              L   G+N + IG+VL+  Y  P EI+  ILL++++GA+VL    +RDIK
Sbjct: 121 --NLALGGSNTKLIGEVLFKHYLLPFEITAIILLVALLGAVVLT---KRDIK 167


>gi|115531585|ref|YP_783947.1| NADH dehydrogenase subunit 6 [Aurelia aurita]
 gi|110226012|gb|ABG56244.1| NADH dehydrogenase subunit 6 [Aurelia aurita]
          Length = 190

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 21/176 (11%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F  + IIS  +VVT  +P++S+  L+ +F+ AA +F+ L A+F+A+ TL++YVGA+ + 
Sbjct: 5   IFMILTIISGIMVVTAIHPVHSIIWLVLSFIGAAIVFIQLQADFIALATLIIYVGAIAIL 64

Query: 70  FLFIIMMLDI-------DIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           F+F++MML++       +I    P      LG  +  IG+  + +            + E
Sbjct: 65  FIFVLMMLNLSSFEFDGNISSIIPLGITSILGLITLIIGLEYSNI-----------NDPE 113

Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +  ++ K   +++ IG  LY  YA  L ++  ILL++MIGAI+L L+     KRQD
Sbjct: 114 VEEILIKELLDIQTIGFQLYNSYAPHLIVASLILLVAMIGAIILTLQPHLAAKRQD 169


>gi|9280602|gb|AAF86489.1|AF279442_1 NADH dehydrogenase subunit 6 [Lupinus luteus]
          Length = 205

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI LVVY+GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM  I I     EV       G +G  F            I +L  +    +  + V++ 
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTQVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|124484827|ref|YP_001031209.1| NADH dehydrogenase subunit 6 [Amphimedon queenslandica]
 gi|113952599|gb|ABI48998.1| NADH dehydrogenase subunit 6 [Amphimedon queenslandica]
          Length = 197

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 30/193 (15%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            ++S+  V++   P+Y+V  LI AF++ + +F+ +G  ++  I ++VYVGA+ + FLF++
Sbjct: 4   GVVSAVKVISAVRPVYAVLWLISAFLSVSAVFIFIGLVYMGFIMIIVYVGAIAILFLFVM 63

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL----------SRL 124
           MMLD   E A         G+  + I+   +IV      V +  GE           SR 
Sbjct: 64  MMLDQGKEEA---------GTPIVNIIPMGMIVGVGFLWVAATGGEWVGAYITQQNHSRG 114

Query: 125 VF---KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR----DIKRQDI- 176
           +     G ++  IG+V+YT+Y+Y   I  +ILL++M+GAIVL  RH      +  RQD+ 
Sbjct: 115 MIGGQPGGDIVAIGRVVYTEYSYMFIIVSYILLVAMVGAIVLTHRHGEYGPDEPMRQDVY 174

Query: 177 ---SKQLESNPDN 186
              S+ +  +P+ 
Sbjct: 175 IQTSRDIWGHPNQ 187


>gi|294670449|ref|ZP_06735331.1| hypothetical protein NEIELOOT_02168 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307913|gb|EFE49156.1| hypothetical protein NEIELOOT_02168 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 225

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 115/202 (56%), Gaps = 23/202 (11%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + FYL + + +  +   VTV+NP+++   L+  F  +A +++L+ AEF+ +  +VVYV
Sbjct: 4   QLILFYLLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVVVYV 63

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAE-----LIVCASNFMVFS 116
           GAV+V FLF++MML+ID+E  E RK   R    +  +G+L A      L+  A++   F 
Sbjct: 64  GAVMVLFLFVVMMLNIDVE--EMRKGFWRNAPVAAVVGVLMAVALIMILVAPATDLAAF- 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             G+++ +    +NV  +G  +YT Y  P E++  +L+L M+ AI L+  HR+  K + I
Sbjct: 121 --GQMNDVPADHSNVRELGTQIYTTYLLPFELAAVLLVLGMVAAIALV--HRKTFKPKYI 176

Query: 177 SKQLESNPDNSIVMVKVKSGKG 198
                 NP +    VKV + KG
Sbjct: 177 ------NPADQ---VKVDANKG 189


>gi|109156547|ref|YP_654332.1| NADH dehydrogenase subunit 6 [Astrangia sp. JVK-2006]
 gi|108744082|gb|ABG02306.1| NADH dehydrogenase subunit 6 [Astrangia sp. JVK-2006]
          Length = 186

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 11/173 (6%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S  +VV+  NP+ S+F L+  FVN+A  FLLLG +F+A++ L+VYVGA+ V FLF++M+L
Sbjct: 15  SGIMVVSALNPVLSIFWLVLVFVNSAVFFLLLGVDFLALMFLLVYVGAIAVLFLFVVMLL 74

Query: 78  DIDIEVAEPRKK--------RGFL-GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
           ++       R++         GFL G FF   +A+   + +    V S +      +   
Sbjct: 75  NLTDYPPVFREEIDMTNYIPIGFLIGVFFFSEIASSWFIISPR--VESWDLSFPWFLVSY 132

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +N+E +G+VLY        ++ F+LL++MIG IVL        K+QD+  Q+ 
Sbjct: 133 HNIEALGQVLYVACFCLFLLASFVLLVAMIGVIVLTQETEPLTKKQDLFIQIN 185


>gi|83416415|gb|ABC18241.1| NADH dehydrogenase subunit 6 [Brassica oleracea var. botrytis]
          Length = 201

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI LVVY+GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM  I I     EV       G +G  F            I +L  +    +  + V++ 
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|322421841|ref|YP_004201064.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M18]
 gi|320128228|gb|ADW15788.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M18]
          Length = 167

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 7/165 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+S+FF + + +AIISS LVVT +NPI S  SL+  F   A  +++L A F+A   ++VY
Sbjct: 1   MESIFFLVVAAVAIISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V  +F+IM+L++ +E  + R     L    +G+    L       M  S  G++ 
Sbjct: 61  AGAIMVLIIFVIMLLNVRVETVK-RGTHAVLAGSALGLFI--LFQTIWFLMKGSMTGQVG 117

Query: 123 RL----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            +    +    +VE IGK L+T +  P EI+  +LL +++GA++L
Sbjct: 118 DMTKEQIVSVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVIL 162


>gi|15676177|ref|NP_273309.1| NADH dehydrogenase I chain J [Neisseria meningitidis MC58]
 gi|7225476|gb|AAF40707.1| NADH dehydrogenase I, J subunit [Neisseria meningitidis MC58]
 gi|316985181|gb|EFV64133.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis
           H44/76]
 gi|325135056|gb|EGC57684.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis
           M13399]
 gi|325141089|gb|EGC63592.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis CU385]
 gi|325145246|gb|EGC67525.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis M01-240013]
 gi|325145317|gb|EGC67595.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis M01-240013]
 gi|325199456|gb|ADY94911.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis
           H44/76]
          Length = 223

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 113/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY+F+ + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFQLILFYIFAVIILYGALKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|257852688|gb|ACV71356.1| NADH dehydrogenase subunit 6 [Abatia parviflora]
          Length = 178

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL +LLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIK 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI     F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 IRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|225024113|ref|ZP_03713305.1| hypothetical protein EIKCOROL_00981 [Eikenella corrodens ATCC
           23834]
 gi|224943138|gb|EEG24347.1| hypothetical protein EIKCOROL_00981 [Eikenella corrodens ATCC
           23834]
          Length = 225

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 115/202 (56%), Gaps = 23/202 (11%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + FYL + + +  +   VTV+NP+++   L+  F  +A +++L+ AEF+ +  +VVYV
Sbjct: 4   QLILFYLLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVVVYV 63

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAE-----LIVCASNFMVFS 116
           GAV+V FLF++MML+ID+E  E RK   R    +  +G+L A      L+  A++   F 
Sbjct: 64  GAVMVLFLFVVMMLNIDVE--EMRKGFWRNAPVAAVVGVLMAVALIMILVAPATDLAAF- 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             G+++ +    +NV  +G  +YT Y  P E++  +L+L M+ AI L+  HR+  K + I
Sbjct: 121 --GQMNDVPADHSNVRELGTQIYTTYLLPFELAAVLLVLGMVAAIALV--HRKTFKPKYI 176

Query: 177 SKQLESNPDNSIVMVKVKSGKG 198
                 NP +    VKV + KG
Sbjct: 177 ------NPADQ---VKVDAKKG 189


>gi|319411264|emb|CBY91671.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J;
           NDH-1, chain J) [Neisseria meningitidis WUE 2594]
          Length = 223

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 113/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY+F+ + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|218767057|ref|YP_002341569.1| NADH dehydrogenase I chain J [Neisseria meningitidis Z2491]
 gi|121051065|emb|CAM07335.1| NADH dehydrogenase I chain J [Neisseria meningitidis Z2491]
          Length = 223

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 113/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY+F+ + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|269469177|gb|EEZ80719.1| NADH dehydrogenase I chain J [uncultured SUP05 cluster bacterium]
          Length = 203

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 116/201 (57%), Gaps = 10/201 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FY+FSF  + SS  ++  RN   +V  LI +F +AA +++LL AEF+A+  ++
Sbjct: 1   MEFEQILFYVFSFWFVASSLAMIFSRNAAKAVLFLILSFFSAASIWILLEAEFLAITLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF+I ML+ID    +   +  F G   +G++ A +I+     ++ SA+  
Sbjct: 61  VYVGAVMVLFLFVIKMLNID----KSTLRAKFAGYLPLGLMVAAVIIAEMVLVLGSAQFG 116

Query: 121 L---SRLVFKGNNVENI---GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           L   +  V  G +  NI      LYT Y YP E++  +LL+++I AI L+ R+  + K+Q
Sbjct: 117 LDVVAAPVRHGADYSNITVLAMQLYTTYVYPFELAAVLLLIAIIAAITLVHRNEINRKKQ 176

Query: 175 DISKQLESNPDNSIVMVKVKS 195
            I +Q+     + + +V + S
Sbjct: 177 SIPEQVNVQAKDRVRLVSIAS 197


>gi|44889032|sp|P60497|NU6M_ARATH RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
          Length = 205

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 98/185 (52%), Gaps = 23/185 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI LVVY+GA+ V FL
Sbjct: 7   SSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66

Query: 72  FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114
           F++MM  I I     EV       G +G  F            I +L  +    +  + V
Sbjct: 67  FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTV 126

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++ +      V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ
Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQ 179
           D+ ++
Sbjct: 181 DVFRR 185


>gi|319787434|ref|YP_004146909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465946|gb|ADV27678.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 215

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 14/185 (7%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82
           ++VRNP+ +V  LI  F + A  +LL+GAEF+ +  ++VYVGAV+V FLF++MMLDID+ 
Sbjct: 23  ISVRNPVNAVLCLILTFFSVACTWLLVGAEFLGVALILVYVGAVMVLFLFVVMMLDIDVA 82

Query: 83  VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR---------LVFKGNNVEN 133
                 + G++  F    +   +++      +   +   +          L    +N   
Sbjct: 83  AL----REGWV-RFLPVGVVVAVVMLVQVLALIGVKARTATPFPADNAAALAADASNTRW 137

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKV 193
           + + L+TQY  P E +  IL +++I A+++ LR R  IK Q+ ++Q      + + MV +
Sbjct: 138 LAETLFTQYLLPFEFAAVILTVAVIAAVMITLRKRTGIKTQNPAEQSRVKAADRLRMVSM 197

Query: 194 KSGKG 198
            + K 
Sbjct: 198 PAEKA 202


>gi|162452498|ref|YP_001614865.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So
           ce 56']
 gi|161163080|emb|CAN94385.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So
           ce 56']
          Length = 212

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 13/155 (8%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF L S + ++     V  RNPI     L+ + V  AGL+L+L AEF+A I ++VY GA+
Sbjct: 8   FFGLASLLVLLGGLATVAARNPIRGAMGLLTSIVGIAGLYLMLSAEFLAAIQILVYAGAI 67

Query: 67  IVFFLFIIMMLDI------DIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           ++ FLF+IM+L        D   A PR    G LG+  IG LA  L+  AS   V +   
Sbjct: 68  VILFLFVIMLLGPSATSPRDARTAVPRYVGAGVLGASSIGALA--LVASASKPGVLAVPA 125

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
               L      +E +G  L+T+   P E+SG +LL
Sbjct: 126 APESL----GTIEGLGHELFTKGIVPFELSGALLL 156


>gi|294788066|ref|ZP_06753310.1| NADH dehydrogenase (ubiquinone), J subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294484359|gb|EFG32042.1| NADH dehydrogenase (ubiquinone), J subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 215

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 107/187 (57%), Gaps = 6/187 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FYLF+ + +  +   V  +NP+++   L+  F  +A ++LL+ AEF+ +  +V
Sbjct: 1   MTFQLILFYLFAAIILYGALQTVLAKNPVHATLHLVLTFCVSAMMWLLMQAEFLGITLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIVC--ASNFMVFS 116
           VYVGAV+V FLF++MML+IDIE  E RK   R    +  +G+L A  ++    +     +
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIE--EMRKGFWRHAPAAMVVGVLMAVALIAILVAPDTALN 118

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             G +  +    +NV ++G  LYT Y +  E++  +L+L M+ AI L+ R   + KR D 
Sbjct: 119 QFGLMKDIPADYSNVRDLGIQLYTTYMWQFELAAVLLVLGMVAAIALVHRKSTNPKRIDP 178

Query: 177 SKQLESN 183
           + Q++ N
Sbjct: 179 ADQVKVN 185


>gi|255019916|ref|ZP_05291991.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970696|gb|EET28183.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus
           ATCC 51756]
          Length = 198

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 126/201 (62%), Gaps = 8/201 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +L FY+FS + ++S+ LV+T RNP+Y+   L+ AF NAA LFLLLGAEF+ +I ++
Sbjct: 1   MLVTTLLFYVFSAILLLSALLVITARNPVYASLYLVLAFFNAAALFLLLGAEFLGLILIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-G 119
           VYVGAV+V FLF++MMLDI++     R + GFL    +G+  A L V     + ++A  G
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLA----RLQEGFLHYLPLGLAVAILGVLELAAVFWTAPLG 116

Query: 120 EL---SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +   + L    +N   +G +LYTQY YP EI+  ILL+++I AI L LR R   K QDI
Sbjct: 117 HVPAPAALPANADNTRALGGLLYTQYLYPFEIAAVILLIAIIAAIALTLRRRPQSKTQDI 176

Query: 177 SKQLESNPDNSIVMVKVKSGK 197
            +QL       + +V ++  +
Sbjct: 177 GRQLAVKVSERLRLVDLRRPR 197


>gi|227822760|ref|YP_002826732.1| putative NADH-ubiquinone oxidoreductase chain J protein
           [Sinorhizobium fredii NGR234]
 gi|227341761|gb|ACP25979.1| putative NADH-ubiquinone oxidoreductase chain J protein
           [Sinorhizobium fredii NGR234]
          Length = 166

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 3/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ +A+I++ +VV  RNP++S  +L+  F+  + +F+LL A  +A++ + VY
Sbjct: 1   MDQGFFLLFAAVAVITALIVVLARNPVHSALALMACFLQISAVFVLLEAPLLAVVQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS-FFIGILAAELIVCASNFMVFSAEGEL 121
           VGA++V FLF+IMM+D+   V +     G L +   + +L AE++V   +   FSA    
Sbjct: 61  VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLPALVLLVLLGAEMLVLVLSSERFSATEPA 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           ++    G+ +      L+  Y  P E++  ILL +++GAIVL
Sbjct: 121 AK--GGGDQIREFSTTLFADYLLPFEVASVILLAALVGAIVL 160


>gi|316996025|dbj|BAD83537.2| NADH dehydrogenase subunit 6 [Nicotiana tabacum]
          Length = 228

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV  LI  F N +GL LLLG +F AMI  VVY+GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFLIPVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVLFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM  I I     EV       G +G  F            I +L  +    +  + V++ 
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLLFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|133900454|gb|ABO41393.1| NADH dehydrogenase subunit 6 [Flacourtia jangomas]
 gi|133900536|gb|ABO41434.1| NADH dehydrogenase subunit 6 [Populus maximowiczii]
 gi|257852690|gb|ACV71357.1| NADH dehydrogenase subunit 6 [Idesia polycarpa]
          Length = 178

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL +LLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI     F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900462|gb|ABO41397.1| NADH dehydrogenase subunit 6 [Hasseltia floribunda]
 gi|133900538|gb|ABO41435.1| NADH dehydrogenase subunit 6 [Prockia crucis]
 gi|133900548|gb|ABO41440.1| NADH dehydrogenase subunit 6 [Salix reticulata]
          Length = 179

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL +LLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI     F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900534|gb|ABO41433.1| NADH dehydrogenase subunit 6 [Poliothyrsis sinensis]
          Length = 179

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL +LLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI     F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|3617814|emb|CAA08932.1| NADH dehydrogenase subunit 6 [Daucus carota]
 gi|15705129|gb|AAK00521.1| NADH dehydrogenase subunit 6 [Daucus carota]
 gi|15809215|gb|AAK00513.1| NADH dehydrogenase subunit 6 [Daucus carota]
          Length = 205

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 100/185 (54%), Gaps = 23/185 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +A++S+ +VV  +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FL
Sbjct: 7   SSLALVSALMVVRAKNPVHSVSFSIPVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVSFL 66

Query: 72  FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114
           F++MM  I I     EV       G +G  F            I +L  +    +  +MV
Sbjct: 67  FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYMV 126

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++ +      V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQ
Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQ 179
           D+ ++
Sbjct: 181 DVFRR 185


>gi|107736864|ref|YP_626491.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168915]
 gi|107736891|ref|YP_626504.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168916]
 gi|99866575|gb|ABF67623.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168915]
 gi|99866589|gb|ABF67636.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168916]
          Length = 204

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 108/202 (53%), Gaps = 25/202 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F+ + S  +V++  +P++S+F LI  FV +A LFLLLG +FVA++ L++YVGA+ + 
Sbjct: 1   MLAFVIVGSGIMVISTLSPVHSIFWLIVVFVGSAALFLLLGVDFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRG------------FLGSFFIGILAAELIVCASNFMVFSA 117
           FLF+IM+L++   +   R   G             +G+FF   +A+  ++    +   ++
Sbjct: 61  FLFVIMLLNLTDFLPAFRWGGGEADMTNYAPIGLTIGTFFFSEVASSWLIVGGPYAHRTS 120

Query: 118 -EGEL--------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             GE         S  + K +N+E +G++LY    Y   ++  ILL++MIG IVL     
Sbjct: 121 FWGERGGAWDLASSWFLMKYHNIEALGRILYIACYYLFILASLILLVAMIGGIVLTQEVG 180

Query: 169 RDI----KRQDISKQLESNPDN 186
            ++    K+Q+I  Q     D 
Sbjct: 181 AEVGPLAKKQEIFLQTSRAYDK 202


>gi|254670966|emb|CBA07654.1| NADH-ubiquinone oxidoreductase, chain J [Neisseria meningitidis
           alpha153]
          Length = 223

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 113/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY+F+ + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|133900448|gb|ABO41390.1| NADH dehydrogenase subunit 6 [Erythroxylum coca]
          Length = 179

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEIFFIIDNETIPLLPTQRKTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|109156463|ref|YP_654358.1| NADH dehydrogenase subunit 6 [Mussa angulosa]
 gi|109156491|ref|YP_654345.1| NADH dehydrogenase subunit 6 [Colpophyllia natans]
 gi|108744096|gb|ABG02319.1| NADH dehydrogenase subunit 6 [Colpophyllia natans]
 gi|108744110|gb|ABG02332.1| NADH dehydrogenase subunit 6 [Mussa angulosa]
          Length = 186

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 103/188 (54%), Gaps = 12/188 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++L F  F    I+S  +VV+  NP+ S+F L+  FVN+A  FL L  +F+A++ L+VY
Sbjct: 1   MEALIFCFF-LSTIVSGIMVVSALNPVLSIFWLVLVFVNSAVFFLWLEVDFLALMFLLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK--------RGFL-GSFFIGILAAELIVCASNFM 113
           VGA+ V FLF++M+L++       R++         GFL G FF   +A+   +      
Sbjct: 60  VGAIAVLFLFVVMLLNLTDYPPVFREEVDMTNYMPVGFLIGGFFFSEIASSWSIIFPR-- 117

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           V S +      +   +N+E +G+VLY        ++GF+LL++M+G IVL        K+
Sbjct: 118 VESWDLSFPWFLVSYHNIEALGQVLYIPCFCLFFLAGFVLLVAMVGVIVLTQELEPLTKK 177

Query: 174 QDISKQLE 181
           QD+  Q+ 
Sbjct: 178 QDLFIQIN 185


>gi|3914179|sp|O63849|NU6M_SARGL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|3132794|gb|AAC16383.1| NADH dehydrogenase subunit 6 [Sarcophyton glaucum]
          Length = 185

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 8/183 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1   MNSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ + FLF+IM+      + +P K      S F+ I    +I    + +  S +   +
Sbjct: 60  VGAIAILFLFVIML------IQQPNKIDSQDHSHFLPI-GLSVIFLFYSLLTNSPKYISN 112

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L  +           + L S
Sbjct: 113 PVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRS 172

Query: 183 NPD 185
             D
Sbjct: 173 RQD 175


>gi|270267568|ref|YP_003331252.1| NADH dehydrogenase subunit 6 [Dendronephthya gigantea]
 gi|209887406|gb|ACI95028.1| NADH dehydrogenase subunit 6 [Dendronephthya gigantea]
          Length = 185

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 24/192 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLF  + S   +++SF+V++  NP+YSVF L+ AFVNAA +F+ L  +++ +I ++VY
Sbjct: 1   MNSLFI-IISLGIVVASFMVISTPNPVYSVFWLVIAFVNAAVMFISLELDYIGLIFIIVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ + FLF+IM++       +P K      S F+ +    +I   S+ +  S +   +
Sbjct: 60  VGAIAILFLFVIMLIQ------QPNKVYSQDHSHFLPV-GLSVIFLFSSLLTNSPKYISN 112

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM---------------LRH 167
            ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L                LR 
Sbjct: 113 PVIGSKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNFYGESLRS 172

Query: 168 RRDIKRQDISKQ 179
           R+D+  Q IS++
Sbjct: 173 RQDLFLQ-ISRE 183


>gi|296040751|gb|ADG85343.1| NADH dehydrogenase subunit 6 [Silene noctiflora]
          Length = 195

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 23/185 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +A++S  +VV  +NP++SV   I  F N AGL L LG +F AMI LVVY+GA+ V FL
Sbjct: 7   SSLALVSGLMVVRAKNPVHSVLFFILVFCNTAGLLLFLGLDFFAMIFLVVYIGAIAVLFL 66

Query: 72  FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114
           F++MM  I I     EV       G +G  F            I +L  +    +  +  
Sbjct: 67  FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNETIPLLPTQRTTISLRYTG 126

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++ +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 127 YTGK------VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQ 179
           D+ ++
Sbjct: 181 DVFRR 185


>gi|254674113|emb|CBA09897.1| NADH-ubiquinone oxidoreductase, chain J [Neisseria meningitidis
           alpha275]
 gi|308388471|gb|ADO30791.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha710]
 gi|325137078|gb|EGC59674.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           M0579]
 gi|325202920|gb|ADY98374.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           M01-240149]
 gi|325207281|gb|ADZ02733.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 223

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVYRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|296313737|ref|ZP_06863678.1| NADH dehydrogenase, J subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839660|gb|EFH23598.1| NADH dehydrogenase, J subunit [Neisseria polysaccharea ATCC 43768]
          Length = 223

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|261391784|emb|CAX49239.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J;
           NDH-1, chain J) [Neisseria meningitidis 8013]
          Length = 223

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|224437350|ref|ZP_03658322.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818]
 gi|313143813|ref|ZP_07806006.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818]
 gi|313128844|gb|EFR46461.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818]
          Length = 173

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 24/181 (13%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +S+ FYLFS + I+S  +VV+    IY++ +L    +  +G+F  LGAEF+  + +VVY 
Sbjct: 3   ESISFYLFSTLCIVSFLIVVSSSRIIYAMTALAGGMIFISGIFFTLGAEFIGAVQIVVYG 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------------ELIVCA 109
           G+VI  + F +M  D   +V E RK    +    +GI                 E I  +
Sbjct: 63  GSVIALYAFAMMFFDTSKDVIESRKNEWVVSVLCVGICVVLVIMFGLPLLGNQLETIADS 122

Query: 110 SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +N + F+   E+S       N++ IG VL+TQY  P E++  +LL++M+  IVL ++  +
Sbjct: 123 ANLLDFA---EMS-------NIQKIGYVLFTQYLIPFELAALMLLVAMVAGIVLSVKKEQ 172

Query: 170 D 170
            
Sbjct: 173 K 173


>gi|225077028|ref|ZP_03720227.1| hypothetical protein NEIFLAOT_02080 [Neisseria flavescens
           NRL30031/H210]
 gi|224951585|gb|EEG32794.1| hypothetical protein NEIFLAOT_02080 [Neisseria flavescens
           NRL30031/H210]
 gi|325129048|gb|EGC51898.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           N1568]
          Length = 223

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|161870813|ref|YP_001599986.1| NADH dehydrogenase I chain J [Neisseria meningitidis 053442]
 gi|161596366|gb|ABX74026.1| NADH dehydrogenase I chain J [Neisseria meningitidis 053442]
          Length = 223

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSTILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   +N   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTNLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|57014000|ref|YP_173471.1| NADH dehydrogenase subunit 6 [Nicotiana tabacum]
          Length = 228

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV  LI  F N +GL LLLG +F AMI  VVY+GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFLIPVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM  I I     EV       G +G  F            I +L  +    +  + V++ 
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLLFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|254805705|ref|YP_003083926.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha14]
 gi|254669247|emb|CBA08121.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha14]
          Length = 223

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|255067293|ref|ZP_05319148.1| NADH dehydrogenase, J subunit [Neisseria sicca ATCC 29256]
 gi|255048444|gb|EET43908.1| NADH dehydrogenase, J subunit [Neisseria sicca ATCC 29256]
          Length = 223

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 113/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT+Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDVPADYNNIRDLGSRIYTEYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|261599936|dbj|BAI45219.1| NADH dehydrogenase [Dianthus japonicus]
          Length = 205

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFLVVYIGAIAVSFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM  I I     EV       G +G  F            I +L  +    +  + V++ 
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|300775182|ref|ZP_07085044.1| NADH-quinone oxidoreductase subunit J [Chryseobacterium gleum ATCC
           35910]
 gi|300505922|gb|EFK37058.1| NADH-quinone oxidoreductase subunit J [Chryseobacterium gleum ATCC
           35910]
          Length = 165

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 102/176 (57%), Gaps = 31/176 (17%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F+L +F+A+ S+   V  +NP+Y++ SLI    + AG+++LL A+F+A+I ++VY
Sbjct: 1   MDQFLFFLVAFLAVASAVYFVFAKNPLYAILSLIVTMFSIAGMYILLNAQFLAIIQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FL+I+MML+++   A+  KK   L   F+G+  A L++           G L 
Sbjct: 61  AGAIMVLFLYILMMLNLN--KADESKKNNTLK--FVGVFTAGLLLI----------GVLG 106

Query: 123 RLVFKG--------NNVE-------NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
             VF+G         NV+       N+G++L+ +Y  P E++  ++L  ++GA+++
Sbjct: 107 --VFRGIQDNHIVVENVDRGVGLTKNLGRLLFNEYVLPFELASILILAGIVGAVLI 160


>gi|332883535|gb|EGK03818.1| hypothetical protein HMPREF9456_01885 [Dysgonomonas mossii DSM
           22836]
          Length = 167

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 13/173 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++ FY+ + + + +  L V  +NPI+S   +I  F + +G FLLL A F+++I +VVY
Sbjct: 1   MITIIFYILATITLGTGLLTVLSKNPIHSAVYMIICFFSISGHFLLLNALFLSVINIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK-----RGFLGSFFIGI-LAAELIVCASNFMVFS 116
            GA++V  LF +M++++  E  EP+KK        + S  +GI L A L+        + 
Sbjct: 61  AGAIMVLLLFTLMLMNLS-ESHEPKKKVISRVAATISSCLMGIVLLAALLKATPVIETYK 119

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           AEG    L ++  N+  IG+VL  +Y  P E +  +L+ +MIGA+++  + ++
Sbjct: 120 AEG----LDYQSVNI--IGQVLLDEYLVPFEFAAILLITAMIGAVLISKKEKK 166


>gi|150375781|ref|YP_001312377.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           medicae WSM419]
 gi|150030328|gb|ABR62444.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           medicae WSM419]
          Length = 166

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 9/165 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ ++++++  +V  RNP++S  +L+  F+  + +F++LGA  +A+I + VY
Sbjct: 1   MHQGFFLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG----FLGSFFIGILAAELIVCASNFMVFSAE 118
           VGA++V FLF+IMM+D+   V +     G          +G     L++ +  F+     
Sbjct: 61  VGAIMVLFLFVIMMVDVREAVLQRFMPGGNLPALALLLLLGTEMVVLVLWSDRFIESPPV 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            E       G+ + ++ K L++ Y  P EI+  ILL +++GAIVL
Sbjct: 121 AERG-----GDAIRDLSKTLFSDYLLPFEIASVILLAALVGAIVL 160


>gi|148244398|ref|YP_001219092.1| NADH dehydrogenase I chain J [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326225|dbj|BAF61368.1| NADH dehydrogenase I chain J [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 203

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 26/207 (12%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FY+FSF  ++SS  ++  RN   +V  L+ AF +AA +++LL AEF+A+I ++
Sbjct: 1   MGFEQIIFYIFSFWFVVSSLAMIFSRNAAKAVLFLVLAFFSAASIWILLEAEFLAIILIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC-----------A 109
           VYVGAV+V FLF+I ML+ID    + R         F G L   LIV             
Sbjct: 61  VYVGAVMVLFLFVIKMLNIDKSTIKAR---------FTGYLPLRLIVAIIIIIEMSLVLG 111

Query: 110 SN---FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           SN     VFS     S      +N+  +   +YT Y YP E++  +LL+++I AI L+ R
Sbjct: 112 SNQFGLDVFSVPERHSE---DYSNITVLAMQIYTTYVYPFELAAVLLLIAIIAAITLVHR 168

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKV 193
           +    K+Q IS+Q+     + + +V +
Sbjct: 169 NDTSRKKQSISEQVNVQAKDRVRLVSI 195


>gi|325143092|gb|EGC65439.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           961-5945]
 gi|325143162|gb|EGC65508.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           961-5945]
 gi|325197537|gb|ADY92993.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           G2136]
          Length = 223

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|325131603|gb|EGC54310.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           M6190]
 gi|325139142|gb|EGC61688.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           ES14902]
 gi|325203368|gb|ADY98821.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           M01-240355]
          Length = 223

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|332296564|ref|YP_004438487.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermodesulfobium narugense DSM 14796]
 gi|332179667|gb|AEE15356.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermodesulfobium narugense DSM 14796]
          Length = 171

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 102/169 (60%), Gaps = 11/169 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  LFF  F+  +I+ S +V+T +N I++V   +  FV+ +G++L L AEF AMI ++
Sbjct: 1   MSVPVLFFSYFALASIVISLIVITRKNYIHAVLWTLLLFVHISGIYLFLNAEFFAMIQMI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIE-----VAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VY GA++V  +F+IM+L++  E     V+     + FL    +G+LA   IV  ++++  
Sbjct: 61  VYAGAILVMLIFVIMLLNVKHEDHLSDVSSLSIPKAFLVFCVLGVLA---IVLQTSYL-- 115

Query: 116 SAEGELS-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           +  G+ S  LV K ++ + +G++ Y++   PL I G +L + MI AIVL
Sbjct: 116 NTTGKFSIDLVNKVSDAKLLGQIFYSEANLPLIIMGVVLFVPMIAAIVL 164


>gi|133900436|gb|ABO41384.1| NADH dehydrogenase subunit 6 [Drypetes roxburghii]
          Length = 178

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F   +G+ LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFCETSGVLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI+    F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|288817726|ref|YP_003432073.1| NADH dehydrogenase chain J [Hydrogenobacter thermophilus TK-6]
 gi|288787125|dbj|BAI68872.1| NADH dehydrogenase chain J [Hydrogenobacter thermophilus TK-6]
 gi|308751325|gb|ADO44808.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobacter thermophilus TK-6]
          Length = 177

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 101/175 (57%), Gaps = 5/175 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F LFS +A++SS  VV + NP+Y + SL+ + +  AG+F + GAE V  + L++Y
Sbjct: 2   IQWITFLLFSLLAVVSSLGVVLLPNPVYVILSLLSSLIAIAGVFFVAGAELVGALQLLIY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120
             AV VF++F++  +  +  + +    R  G L    + +L  E+++  S  +  S +G+
Sbjct: 62  AVAVTVFYVFVLTAVPWEKALKKDSHYRVEGVLSFPILLLLYFEILIVFSLGVSASPKGQ 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +  L  K  N E IG +L+++Y +  E+   +LL+ MIGA+++    R++ +  D
Sbjct: 122 IKELSKKFGNTEVIGSILFSKYFFAFELVSLVLLIGMIGAVII---GRKEAQTYD 173


>gi|304389076|ref|ZP_07371120.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis ATCC
           13091]
 gi|304336949|gb|EFM03139.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis ATCC
           13091]
          Length = 223

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ +I L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVASIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|109156446|ref|YP_654278.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia bipinnata]
 gi|108513891|gb|ABF93174.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia bipinnata]
          Length = 185

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 8/183 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1   MNSLFI-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAIMFISLGLDYIGLIFIIVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ + FLF+IM+      + +P K      S F+ +    +I    + +  S+    +
Sbjct: 60  VGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFLFYSLLTNSSRYISN 112

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L  +           + L S
Sbjct: 113 PVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRS 172

Query: 183 NPD 185
             D
Sbjct: 173 RQD 175


>gi|241760703|ref|ZP_04758795.1| NADH dehydrogenase i chain j [Neisseria flavescens SK114]
 gi|241318884|gb|EER55410.1| NADH dehydrogenase i chain j [Neisseria flavescens SK114]
          Length = 223

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|261364358|ref|ZP_05977241.1| NADH dehydrogenase, J subunit [Neisseria mucosa ATCC 25996]
 gi|288567622|gb|EFC89182.1| NADH dehydrogenase, J subunit [Neisseria mucosa ATCC 25996]
          Length = 223

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|56791576|gb|AAW30326.1| NADH dehydrogenase subunit 6 [Zamia integrifolia]
          Length = 181

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
            S  A++   +VV   NP++ V   I  F N +GL LL G +  AMI+ VV++GA+   F
Sbjct: 1   LSSPALVPGSMVVRAENPVHPVSFPIPVFRNTSGLLLLSGPDLSAMISPVVHIGAIAALF 60

Query: 71  LFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-----AEGELSRL 124
             ++MML+I I E+ E   +   +      IL  E+ + + N  + S         L   
Sbjct: 61  SSVVMMLNIKIAEIHEKVSRYSPVSGIIGPILRWEMFLISDNDHIPSLPTYIGTTSLRYT 120

Query: 125 VFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           V  G      N E +G +L+T Y+    +S  + L++MIGAIVL +     +KRQD+
Sbjct: 121 VHAGEIQSWTNSETLGNLLHTYYSVRFLVSSPVPLVAMIGAIVLTMHRTTKVKRQDV 177


>gi|155029063|emb|CAO85827.1| NADH dehydrogenase subunit 6 [Helianthus annuus]
          Length = 309

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 99/185 (53%), Gaps = 23/185 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FL
Sbjct: 7   SSLALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFL 66

Query: 72  FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114
           F++MM  I I     EV       G +G  F            I +L  +    +  +MV
Sbjct: 67  FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYMV 126

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++ +      V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQ
Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQ 179
           D+ ++
Sbjct: 181 DVFRR 185


>gi|146298997|ref|YP_001193588.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Flavobacterium johnsoniae UW101]
 gi|146153415|gb|ABQ04269.1| NADH dehydrogenase subunit J [Flavobacterium johnsoniae UW101]
          Length = 179

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 100/168 (59%), Gaps = 11/168 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + + +I++FL +  RNPI+S   L+  F + AG +LLL ++F+A++ ++VY GA++
Sbjct: 17  FCILALITVITAFLTIFSRNPIHSAIYLVICFFSIAGHYLLLNSQFLAVVHIIVYSGAIM 76

Query: 68  VFFLFIIMMLDID--IEVAEPRKKR-GFLGSFFIGILAAELIVCASNFMV--FSAEGELS 122
           + FLF IM+++++   +V  PR  R G + SF + ++    I   S  +V  + + GE  
Sbjct: 77  ILFLFTIMLMNLNEQKDVHRPRITRLGAIVSFCLIVIVLIAIFINSKPIVGDYDSTGE-- 134

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                  ++E +GK+L  +Y  P E +  +LL++MIG ++L  + + +
Sbjct: 135 ----DFQSIEVLGKILLNEYMVPFEFASILLLVAMIGTVLLSKKEKLN 178


>gi|218514978|ref|ZP_03511818.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli 8C-3]
          Length = 166

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 97/169 (57%), Gaps = 5/169 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LFS +++I++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFSAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+  E    R   G  G+    +L   L V     +++S    + 
Sbjct: 61  VGAIMVLFLFVIMMIDVR-EAVLQRFLPG--GNLPALVLVVLLGVEMLVLVLWSDRFSVI 117

Query: 123 RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             V    G+ +  +   L+  Y  P EI+  ILL++++GAIVL  + + 
Sbjct: 118 EPVAMRGGDQIRQLSTTLFADYLLPFEIASVILLVALVGAIVLARKEQE 166


>gi|166895624|ref|YP_001661418.1| NADH dehydrogenase subunit 6 [Cycas taitungensis]
 gi|166706956|dbj|BAF98420.1| NADH dehydrogenase subunit 6 [Cycas taitungensis]
          Length = 201

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S  A++   +VV   NP++ V   I  F N +GL +L G +  AMI+ VV++GA+ V F 
Sbjct: 7   SSPALVPGLMVVRAENPVHPVSFPIPVFRNTSGLLILSGPDLSAMISPVVHIGAIAVLFS 66

Query: 72  FIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-----AEGELSRLV 125
            ++MML+I I E+ E   +   +      IL  E+ +   N  + S         L   V
Sbjct: 67  SVVMMLNIQIAEIHEKVSRYSPVSGLIGPILRWEMFLILDNDHIPSLPTYIGTTSLRYTV 126

Query: 126 FKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             G      N E +G +L+T Y+    +S  + L++MIGAIVL +     +KRQD+
Sbjct: 127 HAGEIQSWTNSETLGNLLHTYYSVRFLVSSPVPLVAMIGAIVLTMHRTTKVKRQDV 182


>gi|322436011|ref|YP_004218223.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidobacterium sp. MP5ACTX9]
 gi|321163738|gb|ADW69443.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidobacterium sp. MP5ACTX9]
          Length = 174

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 10/174 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ   F +F+ +AI  +  ++  R+PI S  SL+   ++ A L+  LGAEF+A   ++VY
Sbjct: 1   MQLALFIIFAALAIAGALNLLLQRHPINSALSLVVVMMSLAVLYWTLGAEFLAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F++M+L+      E  +  G   ++  G+  A  + C  +F+  +    + 
Sbjct: 61  AGAIMVLFVFVVMLLN----AGEEERTTGSRAAYLAGVPGATAVFCLLSFVFLTESKAIG 116

Query: 123 RLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                G      NN+  I +VL+T+   P E++  ++L++++GA+VL  +   +
Sbjct: 117 NATLGGMLSGGVNNIAEISQVLFTRLLLPFEVTSVLILVAILGAVVLARKTEPE 170


>gi|109156421|ref|YP_654308.1| NADH dehydrogenase subunit 6 [Ricordea florida]
 gi|108515291|gb|ABF93388.1| NADH dehydrogenase subunit 6 [Ricordea florida]
          Length = 201

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 109/204 (53%), Gaps = 30/204 (14%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F+ + S  +V++  NP++S+F LI  FV +A LFLLLG +FVA++ L++YVGA+ + 
Sbjct: 1   MLAFVIVGSGIMVISTLNPVHSIFWLIVVFVGSAVLFLLLGIDFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCA------ 109
           FLF+IM+L++ D     P  + G              +G FF   +A+  ++        
Sbjct: 61  FLFVIMLLNLADF---PPAFRWGGEADMTNYAPIGLIIGVFFFSEVASSWLIVGGPYAHR 117

Query: 110 SNFMVFSAEG---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           ++F V   E      S  + K +N+E +G++LY    Y   ++  ILL++MIG IVL   
Sbjct: 118 ASFWVEVGEAWDLACSWFLMKYHNIEALGRILYIACYYLFILASLILLVAMIGGIVLTQE 177

Query: 167 HRRDI----KRQDISKQLESNPDN 186
              ++    K+Q+I  Q     +N
Sbjct: 178 VGSEVGPMAKKQEIFFQTSRIYEN 201


>gi|325130979|gb|EGC53706.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           OX99.30304]
 gi|325205337|gb|ADZ00790.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           M04-240196]
          Length = 223

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ +I L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVASIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|196228500|ref|ZP_03127367.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chthoniobacter flavus Ellin428]
 gi|196227903|gb|EDY22406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chthoniobacter flavus Ellin428]
          Length = 170

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 16/178 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FYLF+ + +     VV  RNP+ S   L+ +F+  A LF+ L A F+A+I ++VY
Sbjct: 1   MSPILFYLFAALTVCFGIAVVANRNPVASALCLVVSFLGLAALFVGLDAYFIAVIQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSAEG 119
            GAV+V FLFIIM+LD+    AE R+K         G++A   I  A  ++V   +SA  
Sbjct: 61  AGAVMVLFLFIIMLLDLK---AETRRKPNLPAYVGGGLVALAFI--AQLWLVLERYSAAH 115

Query: 120 ELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +    ++       ++V N+G  L++ +  P ++ G ++L++ IG +VL    +R++K
Sbjct: 116 QPFPTMWASEGKSIDDVTNVGTTLFSVHNLPFQVIGVLILVATIGVVVL---SKRELK 170


>gi|313669275|ref|YP_004049559.1| NADH dehydrogenase I chain J [Neisseria lactamica ST-640]
 gi|313006737|emb|CBN88207.1| NADH dehydrogenase I chain J [Neisseria lactamica 020-06]
          Length = 223

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|261400481|ref|ZP_05986606.1| NADH dehydrogenase, J subunit [Neisseria lactamica ATCC 23970]
 gi|269209740|gb|EEZ76195.1| NADH dehydrogenase, J subunit [Neisseria lactamica ATCC 23970]
          Length = 223

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|56791572|gb|AAW30324.1| NADH dehydrogenase subunit 6 [Piper betle]
          Length = 177

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 93/178 (52%), Gaps = 21/178 (11%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+ V FLF++
Sbjct: 5   ALVSGLMVVRAKNPVHSVSFPILVFCDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVV 64

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-----------GELSR 123
           MM +I I        R    S  IG     LI     F +F  E             L  
Sbjct: 65  MMFNIQIAETHEEVLRYLPVSGIIG-----LIFWWEMFFIFDNETIPLLPTHRKTTSLRY 119

Query: 124 LVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            V+ G      N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+
Sbjct: 120 TVYAGKVRSWTNLETLGNLLYTYYSVRFLVPSLILLVAMIGAIVLTMHRTSKVKRQDV 177


>gi|298245620|ref|ZP_06969426.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter
           racemifer DSM 44963]
 gi|297553101|gb|EFH86966.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter
           racemifer DSM 44963]
          Length = 175

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 107/189 (56%), Gaps = 28/189 (14%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +L F++ + + ++++ LVV++RN ++S  +L F FV A G+++LL AEF+A++ ++
Sbjct: 1   MDFAALMFWILATILVVAALLVVSLRNIVHSAIALFFVFVMAGGIYILLNAEFIAIVQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDI-DIEVAEPRKKRGFL---------GSFFIGILAAELIVCAS 110
           +Y GAV +  LF +M+  I  ++   P  +  ++         GS   G+  + L +  S
Sbjct: 61  IYAGAVTILILFALMLTRIGGLQRTNPANRLWWIAAIISAFVGGSILYGLFNSTLAI--S 118

Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLY--TQYAY--PLEISGFILLLSMIGAIVLMLR 166
           N    ++ G   +L    NNV  IG++LY  T Y+Y  P EI+  +LL++++GAIV    
Sbjct: 119 N----TSTGGGHQLPAHINNVVAIGQLLYSPTSYSYILPFEIASVVLLVAIVGAIV---- 170

Query: 167 HRRDIKRQD 175
               I R+D
Sbjct: 171 ----IGRED 175


>gi|261378530|ref|ZP_05983103.1| NADH dehydrogenase, J subunit [Neisseria cinerea ATCC 14685]
 gi|269145080|gb|EEZ71498.1| NADH dehydrogenase, J subunit [Neisseria cinerea ATCC 14685]
          Length = 223

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|71733150|ref|YP_271954.1| NADH dehydrogenase subunit 6 [Montastraea faveolata]
 gi|71733164|ref|YP_271941.1| NADH dehydrogenase subunit 6 [Montastraea franksi]
 gi|71733178|ref|YP_271928.1| NADH dehydrogenase subunit 6 [Montastraea annularis]
 gi|71043518|dbj|BAE16181.1| NADH dehydrogenase subunit 6 [Montastraea annularis]
 gi|71043532|dbj|BAE16194.1| NADH dehydrogenase subunit 6 [Montastraea annularis]
 gi|71043546|dbj|BAE16207.1| NADH dehydrogenase subunit 6 [Montastraea franksi]
 gi|71043560|dbj|BAE16220.1| NADH dehydrogenase subunit 6 [Montastraea franksi]
 gi|71043574|dbj|BAE16233.1| NADH dehydrogenase subunit 6 [Montastraea faveolata]
 gi|71043588|dbj|BAE16246.1| NADH dehydrogenase subunit 6 [Montastraea faveolata]
          Length = 186

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 12/188 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++L F  F    I+S  +VV+  NP+ S+F L+  FVN+A  FL L  +F+A++ L+VY
Sbjct: 1   MEALIFCFF-LSTIVSGIMVVSALNPVLSIFWLVLVFVNSAVFFLWLEVDFLALMFLLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK--------RGFL-GSFFIGILAAELIVCASNFM 113
           VGA+ V FLF++M+L++       R++         GFL G FF   +A+   +      
Sbjct: 60  VGAIAVLFLFVVMLLNLTDYPPVFREEVDMTNYMPVGFLIGGFFFSEIASSWSIIFPR-- 117

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           V S +      +   +N+E +G+VLY        ++GF LL++M+G IVL        K+
Sbjct: 118 VESWDLSFPWFLVSYHNIEALGQVLYISCFCLFFLAGFALLVAMVGVIVLTQELEPLTKK 177

Query: 174 QDISKQLE 181
           QD+  Q+ 
Sbjct: 178 QDLFIQIN 185


>gi|200004020|ref|YP_002221355.1| NADH dehydrogenase subunit 6 [Blastocystis sp. DMP/02-328]
 gi|156617367|gb|ABU87587.1| NADH dehydrogenase subunit 6 [Blastocystis sp. BT-1]
 gi|156617370|gb|ABU87589.1| NADH dehydrogenase subunit 6 [Blastocystis sp. DMP/02-328]
          Length = 201

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 101/189 (53%), Gaps = 13/189 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           IIS F+ ++V N +Y+V  LI AF +   +  LL  +++A++ +++YVGA+ + FLF++M
Sbjct: 14  IISVFMTISVNNAVYAVLFLILAFFSTMCILFLLNIDYLALLFILIYVGAITILFLFVVM 73

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-----------EGELSRL 124
           ML I I      K   F+      ++   ++       +F             +   S+L
Sbjct: 74  MLKIKINDKNTTKFLSFINIIISCLIIYNVLCNVQILNIFLPTTTTALETLTYQNWFSKL 133

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDISKQLESN 183
            +  +N++ +G+VL+T Y +   ++GF+LL+ MI AI+L     R I+R Q + +QL   
Sbjct: 134 -YYVDNIKMLGQVLFTTYYFYFILAGFVLLVGMISAILLSKESNRTIRRYQLVYQQLSRE 192

Query: 184 PDNSIVMVK 192
             N++ +V 
Sbjct: 193 VSNAVFLVH 201


>gi|319638826|ref|ZP_07993584.1| NADH dehydrogenase subunit I J [Neisseria mucosa C102]
 gi|317399730|gb|EFV80393.1| NADH dehydrogenase subunit I J [Neisseria mucosa C102]
          Length = 223

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEAMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTFNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|107736213|ref|YP_626509.1| NADH dehydrogenase subunit 6 [Briareum asbestinum]
 gi|100913613|gb|ABF69700.1| NADH dehydrogenase subunit 6 [Briareum asbestinum]
          Length = 185

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 8/161 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1   MNSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ + FLF+IM+      + +P K      S F+ +    +I      +  S +   +
Sbjct: 60  VGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFLFYGLLTNSPKYISN 112

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L
Sbjct: 113 PVIGSKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILL 153


>gi|261379571|ref|ZP_05984144.1| NADH dehydrogenase, J subunit [Neisseria subflava NJ9703]
 gi|284798045|gb|EFC53392.1| NADH dehydrogenase, J subunit [Neisseria subflava NJ9703]
          Length = 223

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLDAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|190893206|ref|YP_001979748.1| NADH-ubiquinone oxidoreductase, chain J [Rhizobium etli CIAT 652]
 gi|190698485|gb|ACE92570.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli CIAT 652]
          Length = 166

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 5/169 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LFS +++I++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFSAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+  E    R   G  G+    +L   L V     +++S    + 
Sbjct: 61  VGAIMVLFLFVIMMIDVR-EAVLQRFLPG--GNLPALVLVVLLGVEMLVLVLWSDRFSVI 117

Query: 123 RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             V    G+ +  +   L+  Y  P EI+  ILL +++GAIVL  + + 
Sbjct: 118 EPVAMRGGDQIRQLSTTLFADYLLPFEIASVILLAALVGAIVLARKEQE 166


>gi|289548977|ref|YP_003473965.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis
           albus DSM 14484]
 gi|289182594|gb|ADC89838.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis
           albus DSM 14484]
          Length = 163

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 96/162 (59%), Gaps = 5/162 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F + S   I+S   V+ ++NP++ V S +   +  AG+FL LGAE +A + L++Y
Sbjct: 1   MEWVIFGILSLWLILSVLGVLFLKNPVHVVLSFLSVVLATAGIFLHLGAELLAGLQLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGEL 121
             A++VF++ ++  +  +    + ++  G +L  F + +    L+V A +++ +S     
Sbjct: 61  AVAIVVFYVLVVTTIPWE----KVKRFEGIYLREFLLAVPFFLLLVVALSYLAWSGSFAT 116

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                 G+NV ++GKVL+T Y +P E++  ILL++M+GAI+L
Sbjct: 117 KGFPLSGDNVRDVGKVLFTSYLFPFELASVILLIAMVGAILL 158


>gi|62161342|ref|YP_214970.1| NADH dehydrogenase subunit 6 [Montipora cactus]
 gi|58220707|gb|AAW67970.1| NADH dehydrogenase subunit 6 [Montipora cactus]
          Length = 197

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 28/196 (14%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F  + S  +V++  NPI+S+F LI  F+ +A  FL LG  FVA++ L++YVGA+ + 
Sbjct: 1   MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFM--V 114
           FLF+IM+L++      P  + G              +G+FF   +A+  ++    +   V
Sbjct: 61  FLFVIMLLNLT--DFPPAFRLGGEADMTNYIPIGLVVGTFFFSEVASSWLIIGGPYTPRV 118

Query: 115 F-------SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           F       + +  L   + K  N+E +G++LY    Y   ++ FILL++M+GAIVL    
Sbjct: 119 FLGAEIGRAWDLALPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLTQEI 178

Query: 168 RRDI----KRQDISKQ 179
             +I    KRQDI  Q
Sbjct: 179 GSEIGPVVKRQDIFFQ 194


>gi|309379793|emb|CBX21569.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 223

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|109156406|ref|YP_654397.1| NADH dehydrogenase subunit 6 [Porites porites]
 gi|108744152|gb|ABG02371.1| NADH dehydrogenase subunit 6 [Porites porites]
          Length = 197

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 30/189 (15%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S  +V++  NPI+S+F L+  F  +A  FL LG  FVA++ L++YVGA+ + FLF+IM+L
Sbjct: 9   SGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAILFLFVIMLL 68

Query: 78  DI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFMVFSAEG-ELS 122
           ++ D     P  + G              +G+FF   +A+  ++   ++   +  G E+S
Sbjct: 69  NLTDF---PPAFRLGGEADMTNYVPIGLLIGTFFFSEVASSWLIIGGSYTHRAFFGAEIS 125

Query: 123 R--------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---- 170
           R         + K  N+E +G++LY    Y   ++ F+LL++MIGAIVL      +    
Sbjct: 126 RAWDLATPWFLMKYQNMEALGRILYITCYYLFILASFVLLVAMIGAIVLTQEVGSEVGPL 185

Query: 171 IKRQDISKQ 179
           +KRQDI  Q
Sbjct: 186 VKRQDIFFQ 194


>gi|298370370|ref|ZP_06981686.1| NADH dehydrogenase (ubiquinone), J subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281830|gb|EFI23319.1| NADH dehydrogenase (ubiquinone), J subunit [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 223

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELASVLLLLGMVAAIALVHRKTFNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|58578623|ref|YP_203313.1| NADH dehydrogenase subunit 6 [Rhizopus oryzae]
 gi|57339010|gb|AAW49480.1| NADH dehydrogenase subunit 6 [Rhizopus oryzae]
          Length = 214

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 46/215 (21%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++   L  F +++S  LV+T RNP+ SV  LI  F+N A   +LLG  F+ +  L+VY
Sbjct: 1   MNAILLDLLVFGSVLSGILVITSRNPVVSVLFLISVFINVACYLILLGINFIGLAYLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDI--------EVAEPRKKRGFLGSFFI-----------GILAA 103
           VGA+ + FLF+IMML+I +        + + P      LG+ F+           G+ + 
Sbjct: 61  VGAIAILFLFVIMMLNIKLVELQDSSEDYSNPYPLAFVLGTLFVSGLSLTNKNIWGVHSE 120

Query: 104 ELIVCAS----------------NFMVFSAEGELSRLVFKGNNVEN----------IGKV 137
           + +  +S                N + F +   L  L    +N +N          IG+V
Sbjct: 121 QSLFGSSNGSGIKLDLSGLFDWVNLLSFKSN-TLETLTINHSNWDNVFVSMDQINSIGQV 179

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           LYT +A  L ++  ILLL+M+G I+L L   + + 
Sbjct: 180 LYTSHALFLIVASMILLLAMVGPIILCLNPTKRVS 214


>gi|257852736|gb|ACV71380.1| NADH dehydrogenase subunit 6 [Prunus caroliniana]
          Length = 178

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPIPVFRDTSGLLILLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVQSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|299138533|ref|ZP_07031712.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidobacterium sp. MP5ACTX8]
 gi|298599779|gb|EFI55938.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidobacterium sp. MP5ACTX8]
          Length = 168

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 10/167 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ+  F +F  +A++ +  ++  R+PI S  SLI   ++ A L+  LGAEF+A   ++VY
Sbjct: 1   MQTALFIIFGLLAVLGALNLLFQRHPINSALSLIVVMMSLAVLYWSLGAEFLAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IM+L+      E  +  G   ++  GI  A  I C   F+  S + +L 
Sbjct: 61  SGAIMVLFVFVIMLLN----AGEEERTHGSQIAYIAGIPGAAAIFCLLTFVFLSEKKQLG 116

Query: 123 RLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                G      +N+  I   L+T    P E++  ++L++++GA+VL
Sbjct: 117 TTQLGGYLTSAVSNITEISHTLFTSLLLPFEVTSILILVAILGAVVL 163


>gi|295311651|ref|YP_003587236.1| NADH dehydrogenase subunit 6 [Citrullus lanatus]
 gi|259156779|gb|ACV96641.1| NADH dehydrogenase subunit 6 [Citrullus lanatus]
          Length = 205

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM  I I     EV       G +G  F            I +L  +    +  + V++ 
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|240014993|ref|ZP_04721906.1| NuoJ [Neisseria gonorrhoeae DGI18]
 gi|240116593|ref|ZP_04730655.1| NuoJ [Neisseria gonorrhoeae PID18]
 gi|240122062|ref|ZP_04735024.1| NuoJ [Neisseria gonorrhoeae PID24-1]
 gi|268602262|ref|ZP_06136429.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID18]
 gi|268586393|gb|EEZ51069.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID18]
          Length = 223

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 111/203 (54%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSVILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|54606785|dbj|BAD66808.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris]
          Length = 205

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM  I I     EV       G +G  F            I +L  +    +  + V++ 
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|91203928|emb|CAJ71581.1| similar to NADH dehydrogenase I subunit J [Candidatus Kuenenia
           stuttgartiensis]
          Length = 169

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 99/172 (57%), Gaps = 9/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+ +  +++++  ++  +NPIY    L+F+F+N A L++LL A+F+A + ++VY
Sbjct: 1   MEPYLFYVMAATSVVAALYLIFEKNPIYCALYLVFSFLNIAVLYVLLEAQFIAAVQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IM+L  +   +E ++K G        ++   +++      + S   +  
Sbjct: 61  TGAIMVLFLFVIMLLMTN---SEQKQKDGLPFQRIPAMVLGLVLLIIMGLTIKSKLFQGR 117

Query: 123 RLVFKGNNVENI------GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             ++    VE+I      GK+L+T Y  P E++  +L +++IGAI+L  R +
Sbjct: 118 EGIYTSAKVESIGHTQLVGKLLFTDYLLPFEMTSVLLFVAVIGAIILAKRKQ 169


>gi|59802063|ref|YP_208775.1| hypothetical protein NGO1742 [Neisseria gonorrhoeae FA 1090]
 gi|194099638|ref|YP_002002769.1| NuoJ [Neisseria gonorrhoeae NCCP11945]
 gi|239999834|ref|ZP_04719758.1| NuoJ [Neisseria gonorrhoeae 35/02]
 gi|240017441|ref|ZP_04723981.1| NuoJ [Neisseria gonorrhoeae FA6140]
 gi|240081580|ref|ZP_04726123.1| NuoJ [Neisseria gonorrhoeae FA19]
 gi|240113862|ref|ZP_04728352.1| NuoJ [Neisseria gonorrhoeae MS11]
 gi|240118817|ref|ZP_04732879.1| NuoJ [Neisseria gonorrhoeae PID1]
 gi|240124356|ref|ZP_04737312.1| NuoJ [Neisseria gonorrhoeae PID332]
 gi|240126568|ref|ZP_04739454.1| NuoJ [Neisseria gonorrhoeae SK-92-679]
 gi|240129033|ref|ZP_04741694.1| NuoJ [Neisseria gonorrhoeae SK-93-1035]
 gi|254494617|ref|ZP_05107788.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 1291]
 gi|260439646|ref|ZP_05793462.1| NuoJ [Neisseria gonorrhoeae DGI2]
 gi|268595644|ref|ZP_06129811.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 35/02]
 gi|268597676|ref|ZP_06131843.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae FA19]
 gi|268599928|ref|ZP_06134095.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae MS11]
 gi|268604528|ref|ZP_06138695.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID1]
 gi|268682983|ref|ZP_06149845.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID332]
 gi|268685148|ref|ZP_06152010.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-92-679]
 gi|268687411|ref|ZP_06154273.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-93-1035]
 gi|291042887|ref|ZP_06568628.1| NADH-quinone oxidoreductase subunit J [Neisseria gonorrhoeae DGI2]
 gi|293398103|ref|ZP_06642308.1| NADH dehydrogenase I subunit J [Neisseria gonorrhoeae F62]
 gi|59718958|gb|AAW90363.1| putative NADH dehydrogenase I chain J [Neisseria gonorrhoeae FA
           1090]
 gi|193934928|gb|ACF30752.1| NuoJ [Neisseria gonorrhoeae NCCP11945]
 gi|226513657|gb|EEH63002.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 1291]
 gi|268549033|gb|EEZ44451.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 35/02]
 gi|268551464|gb|EEZ46483.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae FA19]
 gi|268584059|gb|EEZ48735.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae MS11]
 gi|268588659|gb|EEZ53335.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID1]
 gi|268623267|gb|EEZ55667.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID332]
 gi|268625432|gb|EEZ57832.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-92-679]
 gi|268627695|gb|EEZ60095.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-93-1035]
 gi|291013321|gb|EFE05287.1| NADH-quinone oxidoreductase subunit J [Neisseria gonorrhoeae DGI2]
 gi|291611366|gb|EFF40436.1| NADH dehydrogenase I subunit J [Neisseria gonorrhoeae F62]
 gi|317165123|gb|ADV08664.1| hypothetical protein NGTW08_1707 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 223

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 111/203 (54%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSVILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|109156534|ref|YP_654295.1| NADH dehydrogenase subunit 6 [Rhodactis sp. CASIZ 171755]
 gi|108515262|gb|ABF93375.1| NADH dehydrogenase subunit 6 [Rhodactis sp. CASIZ 171755]
          Length = 203

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 109/203 (53%), Gaps = 28/203 (13%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F+ + S  +V++  +P++S+F LI  FV +A LFLLLG +FVA++ L++YVGA+ + 
Sbjct: 1   MLAFVIVGSGIMVISTLSPVHSIFWLIVVFVGSAVLFLLLGIDFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-------------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           FLF+IM+L++             D+    P      +G+FF   +A+  ++    +   +
Sbjct: 61  FLFVIMLLNLTDFPPAFRWGGEADMTNYAPIGLT--IGTFFFSEVASSWLIVGGPYAHRT 118

Query: 117 A-EGEL--------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +  GE         S  + K +N+E +G++LY    Y   ++ FILL++MIG +VL    
Sbjct: 119 SFWGERGGAWDLASSWFLMKYHNIEALGRILYIACYYLFILASFILLVAMIGGMVLTQEV 178

Query: 168 RRDI----KRQDISKQLESNPDN 186
             ++    K+Q+I  Q     D 
Sbjct: 179 GAEVGPLAKKQEIFLQTSRAYDK 201


>gi|121634123|ref|YP_974368.1| NADH dehydrogenase I chain J [Neisseria meningitidis FAM18]
 gi|120865829|emb|CAM09561.1| NADH dehydrogenase I chain J [Neisseria meningitidis FAM18]
          Length = 223

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115
           VYVGAV+V FLF++MML+IDIE       R     G +G+     L   L+   ++   F
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR +
Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRME 177

Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197
            + Q++   D   + +VK+++ K
Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200


>gi|218463312|ref|ZP_03503403.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli Kim 5]
          Length = 166

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 97/170 (57%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ ++++++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFATVSVVTALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+  E    R   G  G+    +L   L +     +++S    + 
Sbjct: 61  VGAIMVLFLFVIMMIDVR-EAVLQRFLPG--GNLLALVLVVVLGLEMLVLVLWSDRFSVI 117

Query: 123 RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             V    G+ +  +   L+  Y  P EI+  ILL +++GAIVL  R  +D
Sbjct: 118 EPVAMRGGDQIRQLSTTLFADYLLPFEIASVILLAALVGAIVLA-RKEQD 166


>gi|110225687|ref|YP_665692.1| NADH dehydrogenase subunit 6 [Mesostigma viride]
 gi|17222558|gb|AAL36731.1|AF353999_11 NADH dehydrogenase subunit 6 [Mesostigma viride]
          Length = 219

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 52/216 (24%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FYLFS +A++S+ +V+  +NP+YSV  LI  F N   L +L G +F+AM+ +VVYVGA
Sbjct: 1   MLFYLFSSLALVSAIIVIRTKNPVYSVLFLILVFANVTALLILEGLDFLAMVFIVVYVGA 60

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKRGFLG------SFF--IGILAAELIVCASNFMVFS 116
           + V FLF++MML+I++ E++E   +   +G      S F  + I+ +ELI     F +F 
Sbjct: 61  IAVLFLFVVMMLNINLAEMSENMVRYLPVGGLILILSLFQILLIVESELIPPLFPFKIFQ 120

Query: 117 AEGELSRL---------VFKGN----------------------------------NVEN 133
            +  LS             K N                                  N++ 
Sbjct: 121 TDLLLSWFSNLQESLNAPLKENLTILYNIAPWHFVEPNLRPVSGINCFLMSQQDISNIQA 180

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           IG VL++ + + L + G ILL++MIG I+L +   +
Sbjct: 181 IGLVLFSTHWFYLMLGGLILLVAMIGTILLTMDKNK 216


>gi|223937085|ref|ZP_03628993.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium
           Ellin514]
 gi|223894366|gb|EEF60819.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium
           Ellin514]
          Length = 164

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 99/176 (56%), Gaps = 18/176 (10%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FY+F+ + +I    V+  RNPI S   L+ +  + AGLF+LL A F+  + ++VY
Sbjct: 1   MPEYLFYIFAALTLICGAFVIINRNPINSAMCLVLSIGSMAGLFVLLNAFFLGAVQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA----E 118
            GAV+V FLF+IM+LD+    AE R++    G+   G+ +    V A  F+ + A    +
Sbjct: 61  AGAVMVLFLFVIMLLDLK---AEERRRVNLFGA-VTGVTS----VAAIAFIFYKALAASK 112

Query: 119 GELSRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +L  +  +  G  VE +G  L++ Y  P EI   +LL++M+G I+L    ++D+K
Sbjct: 113 DQLPNVTDRAVGGTVE-LGTKLFSDYLLPFEILSILLLVAMVGVILL---SKKDLK 164


>gi|193782685|ref|NP_436087.2| NuoJ2 NADH:quinone oxidoreductase subunit 6 (chain J)
           [Sinorhizobium meliloti 1021]
 gi|307304387|ref|ZP_07584138.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti BL225C]
 gi|10945071|emb|CAC14146.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
 gi|193073141|gb|AAK65499.2| NuoJ2 NADH:quinone oxidoreductase subunit 6 (chain J)
           [Sinorhizobium meliloti 1021]
 gi|306902589|gb|EFN33183.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti BL225C]
          Length = 166

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 96/165 (58%), Gaps = 9/165 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ ++++++  +V  RNP++S  +L+  F+  + +F++LGA  +A+I + VY
Sbjct: 1   MHQGFFLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFSAE 118
           VGA++V FLF+IMM+D+   V +     G L +  + +L       L++ +  F+     
Sbjct: 61  VGAIMVLFLFVIMMVDVREAVLQRFMPGGNLPALALLVLLGAEMVVLVLWSDRFIESPPV 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            E       G+ + ++ K L++ Y  P E++  ILL +++GAIVL
Sbjct: 121 AERG-----GDAIRDLSKTLFSDYLLPFEVASVILLAALVGAIVL 160


>gi|134299886|ref|YP_001113382.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Desulfotomaculum reducens MI-1]
 gi|134052586|gb|ABO50557.1| NADH dehydrogenase subunit J [Desulfotomaculum reducens MI-1]
          Length = 172

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 29/186 (15%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L S + + S+ LVVT++N ++SV  LI  F+  AG+FLLL A+FVAM+ ++VY GAV 
Sbjct: 10  FVLLSGLVLGSALLVVTLKNLVHSVLWLIVTFIGVAGIFLLLNADFVAMVQVLVYAGAVC 69

Query: 68  VFFLFIIMMLD-IDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           +   F +M++   D+E + P   R       +G  FI I            ++      L
Sbjct: 70  IMIAFGVMLVQRQDMENSNPMNSRYKIAFPLIGGLFISI----------GLLMARTRWTL 119

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           S        V+ +  +L T Y  P E++  +L +++ GA+VL+             K+++
Sbjct: 120 SGEAVPEKTVQGLAPILLTDYVIPFEVAAVLLTVALTGALVLV-------------KEVK 166

Query: 182 SNPDNS 187
           +N D S
Sbjct: 167 ANGDRS 172


>gi|56791570|gb|AAW30323.1| NADH dehydrogenase subunit 6 [Pinus thunbergii]
          Length = 186

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 11/182 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++     I  F N +GL +LLG +  AMI+ VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHPASFPIPVFRNTSGLLILLGPDLPAMISPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFS-----AEG 119
           + V  L ++MML++ I     +  R    S  IG IL  E+     N  + S     +  
Sbjct: 61  IAVSSLPVVMMLNMKIAEIHEKVSRYPPVSGIIGLILRWEMFFIPDNDHIPSLPTCISTT 120

Query: 120 ELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            L   V  G      N E  G  L+T Y+    +S  I  ++MIGA VL +     +KRQ
Sbjct: 121 SLRYTVHAGEIQSWTNSETSGNSLHTYYSVRFSVSSPIPSVAMIGATVLTMHRTTRVKRQ 180

Query: 175 DI 176
           D+
Sbjct: 181 DV 182


>gi|269926640|ref|YP_003323263.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790300|gb|ACZ42441.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 173

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 96/164 (58%), Gaps = 5/164 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S  F LF+ + ++ + +VV  RNP++ V  ++  FVN A +F+LL A+F+A++ ++VY G
Sbjct: 5   SWLFILFAVIGLLGAVMVVVARNPVHCVLFMLLTFVNIAAMFVLLDAQFIAILQVLVYSG 64

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAE--GE 120
           A++V FLF++M+L            R  L    +  G+   E+IV     ++ +    G+
Sbjct: 65  AILVLFLFVVMLLQQAERPIPMLAARVQLPVALVVGGLFLLEIIVVTFGNIITAGRKGGD 124

Query: 121 LSRLVFK-GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
             + + + G NV+ +G+ L+T++  P EI+  +LL++ IGA+ L
Sbjct: 125 TPQAIAQAGGNVQALGEQLFTRWLLPFEIASVLLLVAAIGALYL 168


>gi|312131903|ref|YP_003999243.1| NADH dehydrogenase subunit j [Leadbetterella byssophila DSM 17132]
 gi|311908449|gb|ADQ18890.1| NADH dehydrogenase subunit J [Leadbetterella byssophila DSM 17132]
          Length = 178

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 95/168 (56%), Gaps = 5/168 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FY F+ +A+  +   +  + P++SV +LI  F + +G+++LL A+F+A++ ++VY
Sbjct: 9   MVEWVFYFFAVLALCGALGTILSKKPMHSVIALIITFFSLSGIYVLLNAQFLAVVNIIVY 68

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IM L++  E  E R     L +   G++   ++V       F+    ++
Sbjct: 69  AGAIMVLFLFVIMFLNLRQESNELRNTPMILAATISGLILVLMLVAVYRKAYFA---PVN 125

Query: 123 RLVFKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            + F+     +EN+G +LY  Y  P E+   + L+++ GAI++  R +
Sbjct: 126 PVTFRAETGMIENLGTLLYRHYMLPFELVSVLFLVAISGAILIGKREK 173


>gi|62161415|ref|YP_214918.1| NADH dehydrogenase subunit 6 [Anacropora matthai]
 gi|58220693|gb|AAW67957.1| NADH dehydrogenase subunit 6 [Anacropora matthai]
          Length = 197

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 28/196 (14%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F  + S  +V++  NPI+S+F LI  F+ +A  FL LG  FVA++ L++Y+GA+ + 
Sbjct: 1   MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYMGAIAIL 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFM--V 114
           FLF+IM+L++      P  + G              +G+FF   +A+  ++    +   V
Sbjct: 61  FLFVIMLLNLT--DFPPAFRLGGEADMTNYIPIGLVVGTFFFSEVASSWLIIGGPYTPRV 118

Query: 115 F-------SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           F       + +  L   + K  N+E +G++LY    Y   ++ FILL++M+GAIVL    
Sbjct: 119 FLGAEIGRAWDLALPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLTQEI 178

Query: 168 RRDI----KRQDISKQ 179
             +I    KRQDI  Q
Sbjct: 179 GSEIGPVVKRQDIFFQ 194


>gi|86359319|ref|YP_471211.1| NADH-ubiquinone oxidoreductase chain J protein [Rhizobium etli CFN
           42]
 gi|86283421|gb|ABC92484.1| probable NADH-ubiquinone oxidoreductase chain J protein [Rhizobium
           etli CFN 42]
          Length = 166

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 97/169 (57%), Gaps = 5/169 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ +++I++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFATVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V F+F+IMM+D+  E    R   G  G+    +L   L V     +++S    + 
Sbjct: 61  VGAIMVLFVFVIMMIDVR-EAVLQRFLPG--GNLPALVLVVLLGVEMLVLVLWSDRFSVI 117

Query: 123 RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             V    G+ +  +   L+  Y  P EI+  ILL ++IGAIVL  + ++
Sbjct: 118 EPVAMRGGDQLRQLSTTLFADYLLPFEIASVILLAALIGAIVLARKEQQ 166


>gi|295311694|ref|YP_003587371.1| NADH dehydrogenase subunit 6 [Cucurbita pepo]
 gi|259156822|gb|ACV96683.1| NADH dehydrogenase subunit 6 [Cucurbita pepo]
          Length = 205

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 99/182 (54%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDI-EVAEPRKK----RGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM  I I E+ E   +     G +G  F            I +L  +    +  + V++ 
Sbjct: 70  MMFHIQIAEIHESVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAE 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDLF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|20065788|ref|NP_612820.1|ND6_16049 NADH dehydrogenase subunit 6 [Acropora tenuis]
 gi|5817779|gb|AAD52916.1|AF152244_3 NADH dehydrogenase subunit 6 [Acropora tenuis]
 gi|19908468|gb|AAM02911.1|AF338425_5 NADH dehydrogenase subunit 6 [Acropora tenuis]
          Length = 197

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 34/199 (17%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F  + S  +V++  NPI+S+F LI  F+ +A  FL LG  FVA++ L++YVGA+ + 
Sbjct: 1   MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFMVFS 116
           FLF+IM+L  ++    P  + G              +G+FF   +A+  ++       ++
Sbjct: 61  FLFVIMLL--NLTDFPPAFRLGGEADMTNYIPIGLVIGTFFFSEVASSWLIIGGP---YT 115

Query: 117 AEG------------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
            +G             +   + K  N+E +G++LY    Y   ++ FILL++M+GAIVL 
Sbjct: 116 PQGFLGAEIGGAWDLAIPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLT 175

Query: 165 LRHRRD----IKRQDISKQ 179
                +    +KRQDI  Q
Sbjct: 176 QEIGSEVGPVVKRQDIFFQ 194


>gi|116619260|ref|YP_821416.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116222422|gb|ABJ81131.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 164

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 22/178 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F  F+ +A++ +  VV   +PI S  SL+    + A L+LLLGAEF+A   ++VY
Sbjct: 1   MDVILFLTFAVIAVVCAINVVVQTHPISSALSLVGVMGSLAILYLLLGAEFIAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL--GS----FFIGILA--AELIVCASNFMV 114
            GA++V F+F+IM+L+     AE  K R +L  G+     F+G++A   + I  ++  + 
Sbjct: 61  AGAIMVLFVFVIMLLNAG---AETTKGRSYLIPGAPLLIVFLGLVAFFVQRIFPSATMVR 117

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           F          F G    +IG  L+T Y  P E++  ++L++++GAIVL    R++I+
Sbjct: 118 FGG--------FTGGGPRDIGNALFTTYLLPFEVTSLLILIAIVGAIVL---ARKEIE 164


>gi|109156519|ref|YP_654384.1| NADH dehydrogenase subunit 6 [Pavona clavus]
 gi|108744138|gb|ABG02358.1| NADH dehydrogenase subunit 6 [Pavona clavus]
          Length = 201

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 30/199 (15%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +F  + S  +V++  NPI+S+F L+  F  +A  FL LG  FVA++ L++YVGA+ 
Sbjct: 3   FYTLAFGVVGSGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGAIA 62

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNF- 112
           + FLF+IM+L++ D     P  + G              +G+FF   +A+  ++    + 
Sbjct: 63  ILFLFVIMLLNLTDF---PPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYA 119

Query: 113 --MVFSAEGE------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
              +F AE        +   + K  N+E +G++LY    Y   ++  ILL++++GAIVL 
Sbjct: 120 HRALFGAEIRRAWDLAIPWFLMKYQNMEALGRILYIACYYLFILASLILLVALVGAIVLT 179

Query: 165 LRHRRD----IKRQDISKQ 179
                +    +KRQDI  Q
Sbjct: 180 QEIGAEAGPMVKRQDIFFQ 198


>gi|255318324|ref|ZP_05359559.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acinetobacter
           radioresistens SK82]
 gi|262379068|ref|ZP_06072224.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter
           radioresistens SH164]
 gi|255304636|gb|EET83818.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acinetobacter
           radioresistens SK82]
 gi|262298525|gb|EEY86438.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter
           radioresistens SH164]
          Length = 175

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 99/184 (53%), Gaps = 23/184 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AIIS+  VVT  NP++++ SLI + +  AG+FL++GA F   + ++VY GA++
Sbjct: 5   FYLMALVAIISTIRVVTNTNPVHALLSLIVSLLAVAGIFLIVGAPFAGALEVIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNFMVFSAEG 119
           V F+F++MML++  +  E  +K           L SF +G+    ++V        +A  
Sbjct: 65  VLFVFVVMMLNLGQQTMEQERKWLNSSAWAYPALMSFLMGL----ILVWMLGGEYTTAGA 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            L R +      + +G+ L+T Y   +E++  +LL S++ A          I R++   +
Sbjct: 121 TLGREII---GPKAVGQSLFTHYLLLVEVAAMLLLASLVAAF--------HIGRREPGAE 169

Query: 180 LESN 183
            E+N
Sbjct: 170 EENN 173


>gi|33860718|ref|NP_892279.1| NADH dehydrogenase subunit J [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633660|emb|CAE18617.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 199

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 16/198 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S + II +  V+ + N +YS F L   F++ AGL+LLL A FVA   ++VYV
Sbjct: 8   QIICFSVLSLVVIIGALGVILLENIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           GAV V  +F IM+++   D++ +A  + +R    S  + +L+  + V  SN     AE  
Sbjct: 68  GAVNVLIIFAIMLVNKKEDLKAIANIKSRRIISTSICLTLLSLLIRVDLSNTWGL-AEPN 126

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS--- 177
            S       +   IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DIS   
Sbjct: 127 AS---IGEESTVRIGEHLFSDYLLPFEVASVLLLMAMIGAIVL---ARRDVMNEDISTGL 180

Query: 178 ---KQLESNPDNSIVMVK 192
              ++L   P+  +++ K
Sbjct: 181 PVDQELIEKPNEPLLIKK 198


>gi|49147174|ref|YP_025767.1| NADH dehydrogenase subunit 6 [Pseudendoclonium akinetum]
 gi|33439189|gb|AAQ18726.1| NADH dehydrogenase subunit 6 [Pseudendoclonium akinetum]
          Length = 203

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 15/187 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F +F  + I S+  VV   NP+Y+V  LI AF NA+ L LL G +++A + +V+YVGA  
Sbjct: 4   FIIFCALLIASALFVVQCNNPVYAVLFLILAFFNASALTLLAGHDYLAALLIVLYVGATC 63

Query: 68  VFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNF----------MVFS 116
            FFLF IM+L+I I E++E R K   + +    ILA +L    ++F          ++ S
Sbjct: 64  TFFLFAIMILNIQIAEISEKRLKLAPISAIIGIILALQLETIVASFESPIVMDYLPLISS 123

Query: 117 AEGE----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +      ++ L+     +  +G +LYT YA  L ++  ILL +MIG+I L L       
Sbjct: 124 IDSSGPEGVALLIDTSTQIYGLGAILYTHYASFLILASLILLSAMIGSISLTLSKGTGNL 183

Query: 173 RQDISKQ 179
           RQ + +Q
Sbjct: 184 RQQVFQQ 190


>gi|56791582|gb|AAW30329.1| NADH dehydrogenase subunit 6 [Lonicera sp. Bergthorsson 0301]
          Length = 178

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 23/182 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FL
Sbjct: 3   SSLALVSGLMVVRAKNPVHSVSFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFL 62

Query: 72  FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114
           F++MM  I I     EV       G +G  F            I +L  +    +  +MV
Sbjct: 63  FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYMV 122

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++ +      V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ
Sbjct: 123 YAGK------VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 176

Query: 175 DI 176
           D+
Sbjct: 177 DV 178


>gi|150026253|ref|YP_001297079.1| NADH dehydrogenase I, J subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772794|emb|CAL44278.1| NADH dehydrogenase I, J subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 170

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 95/173 (54%), Gaps = 23/173 (13%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  S + + ++ L +  +NPI+S   L+  F + AG +LL  A+F+A++ ++VY GA++
Sbjct: 8   FYFLSAITLATALLTIISKNPIHSAIYLVICFFSVAGHYLLFNAQFLAIVHIIVYSGAIM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL-------IVCASNFMVF-SAEG 119
           V FLF IM+++++ E  EP K           I+A +L       +VC     VF  A  
Sbjct: 68  VLFLFTIMLMNLN-EEGEPHK-----------IMATKLAAVVSFGLVCFVMLAVFIKAMP 115

Query: 120 ELSRLVFKGNNVENI---GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           ++      G + ++I   GKVL  +Y  P E +  +LL++M+G ++L  + ++
Sbjct: 116 KMETYRASGQDFQSIKVLGKVLLNEYMVPFEFASILLLVAMMGVVLLSKKEKK 168


>gi|261420755|ref|YP_003254437.1| NADH dehydrogenase subunit J [Geobacillus sp. Y412MC61]
 gi|319768425|ref|YP_004133926.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. Y412MC52]
 gi|261377212|gb|ACX79955.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. Y412MC61]
 gi|317113291|gb|ADU95783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. Y412MC52]
          Length = 173

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 13/173 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+L +  AI     ++ + N ++ V +L+  FV  AGL++LL AEFVA++ +++Y GA+ 
Sbjct: 8   FFLLALAAIAGGVTMLQLTNVVHMVIALVMTFVGIAGLYVLLSAEFVAVVQVLIYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--CASNFMV----FSAEGEL 121
           +  LF IM+        + R+++   G +   + A  +I    A  F +    F A+G  
Sbjct: 68  IIMLFAIMLTR---HHTDERERQTTGGVWHKAVAALSVIAFGLAVYFGIRQLDFGADGS- 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                 G+N + IGK LY+ Y  P EI   ILL+++IGAIVL  +  +  + +
Sbjct: 124 ---ALSGDNAKAIGKSLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAEDE 173


>gi|197259884|ref|YP_002149679.1| NADH dehydrogenase subunit 6 [Madracis mirabilis]
 gi|169809232|gb|ACA84070.1| NADH dehydrogenase subunit 6 [Madracis mirabilis]
          Length = 187

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 102/186 (54%), Gaps = 13/186 (6%)

Query: 7   FFYLFSFMAIISS-FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           FF  F  + II S  +VV+  NP+ S+F L+  F+N+A  FLLLG +F+A++ L++YVGA
Sbjct: 3   FFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI-----VCASNFMVFSAEGE 120
           + + FLF+IM+L  ++    P  KR    + +I I     I     + +S  ++ S + E
Sbjct: 63  IAILFLFVIMLL--NLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLLLGSFQVE 120

Query: 121 LSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              L F       +N+E +G VLY        ++ FILL++MIG IVL        K+QD
Sbjct: 121 NWDLSFPWFLISYHNIEALGHVLYVSCFCLFLLASFILLVAMIGVIVLTQETEPLSKKQD 180

Query: 176 ISKQLE 181
           +  Q+ 
Sbjct: 181 LFFQIN 186


>gi|171914648|ref|ZP_02930118.1| NADH dehydrogenase subunit J [Verrucomicrobium spinosum DSM 4136]
          Length = 187

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 20/185 (10%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++ FYLFS + ++   +VV +RNP+ S  SL+ +F   A LF+ L A F+ +I ++VY
Sbjct: 1   MPAVLFYLFSALTLVFGLMVVVLRNPVASALSLVMSFAGLAALFISLDAYFIGIIQILVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI------------LAAELIVCAS 110
            GAV+V FLFIIM+LDI  E  +       +G   + I            L A     A 
Sbjct: 61  AGAVMVLFLFIIMLLDIKAEALKKVNAFSVVGGALLAIVFIVQLGMILGGLEAGKKTVAD 120

Query: 111 NFMVFSAEGELSRL-VFKGN-------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
             + F A  E  +L   K +       + + +G  L+ +Y + +++ G +LL+  IG ++
Sbjct: 121 VPIHFEAAAETQKLPTIKEDLAKKSLPDTKLVGMALFHRYPFQIQLMGALLLVGTIGVVI 180

Query: 163 LMLRH 167
           L  R 
Sbjct: 181 LSKRE 185


>gi|109156477|ref|YP_654410.1| NADH dehydrogenase subunit 6 [Siderastrea radians]
 gi|108744166|gb|ABG02384.1| NADH dehydrogenase subunit 6 [Siderastrea radians]
          Length = 197

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 30/197 (15%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F  + S  +V++  NPI+S+F LI  F  +A  FL LG  FVA++ L++YVGA+ + 
Sbjct: 1   MLAFGVVGSGIMVISALNPIHSIFWLIVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFM-- 113
           FLF+IM+L++ D     P  + G              +G+FF   +A+  ++    +   
Sbjct: 61  FLFVIMLLNLTDF---PPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYTHR 117

Query: 114 -VFSAE----GELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             F AE     +L+   F  K  N+E +G++LY    Y   ++  ILL++MIGAIVL   
Sbjct: 118 AFFGAEIRKAWDLAAPWFLMKYQNMEALGRILYIACYYLFILASLILLVAMIGAIVLTQE 177

Query: 167 HRRD----IKRQDISKQ 179
              +    +KRQDI  Q
Sbjct: 178 VGSEVGPMVKRQDIFFQ 194


>gi|327191015|gb|EGE58069.1| putative NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli CNPAF512]
          Length = 166

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 95/169 (56%), Gaps = 5/169 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ +++I++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFAAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+  E    R   G  G+    +L   L V     +++S    + 
Sbjct: 61  VGAIMVLFLFVIMMIDVR-EAVLQRFLPG--GNLPALVLVVLLGVEMLVLVLWSDRFSVI 117

Query: 123 RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             V    G+ +  +   L+  Y  P E +  ILL +++GAIVL  + + 
Sbjct: 118 EPVAMRGGDQIRQLSTTLFADYLLPFEAASVILLAALVGAIVLARKEQE 166


>gi|56421884|ref|YP_149202.1| NADH dehydrogenase subunit J [Geobacillus kaustophilus HTA426]
 gi|56381726|dbj|BAD77634.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Geobacillus
           kaustophilus HTA426]
          Length = 173

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 94/173 (54%), Gaps = 13/173 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+L +  AI     ++ + N ++ V +L+  F+  AGL++LL AEFVA++ +++Y GA+ 
Sbjct: 8   FFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVLIYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--CASNFMV----FSAEGEL 121
           +  LF IM+        + R+++   G +   + A  +I    A  F +    F A+G  
Sbjct: 68  IIMLFAIMLTR---HHTDERERQTTGGVWHKAVAALSVIAFGLAVYFGIRQLDFGADGS- 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                 G+N + IGK+LY+ Y  P EI   ILL+++IGAIVL  +  +  + +
Sbjct: 124 ---ALAGDNAKAIGKLLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAEDE 173


>gi|109156505|ref|YP_654319.1| NADH dehydrogenase subunit 6 [Agaricia humilis]
 gi|108744068|gb|ABG02293.1| NADH dehydrogenase subunit 6 [Agaricia humilis]
          Length = 197

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 30/197 (15%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F  + S  +V++  NPI+S+F L+  F  +A  FL LG  FVA++ L++YVGA+ + 
Sbjct: 1   MLAFGVVGSGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNF--- 112
           FLF+IM+L++ D     P  + G              +G+FF   +A+  ++    +   
Sbjct: 61  FLFVIMLLNLTDF---PPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYAHR 117

Query: 113 MVFSAEGE------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +F AE        +   + K  N+E +G+VLY    Y   ++  ILL++M+GAIVL   
Sbjct: 118 ALFGAEIRSAWDLAIPWFLMKYQNMEALGRVLYIACYYLFILASLILLVAMVGAIVLTQE 177

Query: 167 HRRD----IKRQDISKQ 179
              +    +KRQDI  Q
Sbjct: 178 VGSEAGPMVKRQDIFFQ 194


>gi|77917828|ref|YP_355643.1| NADH dehydrogenase I subunit J [Pelobacter carbinolicus DSM 2380]
 gi|77543911|gb|ABA87473.1| NADH dehydrogenase subunit J [Pelobacter carbinolicus DSM 2380]
          Length = 171

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 4/175 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +L FY+ + + ++++ L +T +NP+++V  L+ A    A L+ LLGA  +A   +++Y
Sbjct: 1   MATLLFYILAVITLLATLLCLTRKNPVHAVLYLVHALFAVALLYFLLGAPLLAAWQVILY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IM+  ID  +AE R+  G+       +L+  L+ C    +V        
Sbjct: 61  AGAIMVLFLFVIML--IDPSLAEKRRPGGWPRWLPAALLSGSLLACGGALIVMDPVATGG 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            + F+       G+ L+  Y   +EI   ILL + +GA  L  RH     R+D+S
Sbjct: 119 IVSFQ-LTPRAFGRALFENYGLAVEIISLILLFAAVGAFHLGRRH-DSTTREDVS 171


>gi|228994013|ref|ZP_04153915.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus pseudomycoides
           DSM 12442]
 gi|229000082|ref|ZP_04159652.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides
           Rock3-17]
 gi|228759619|gb|EEM08595.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides
           Rock3-17]
 gi|228765811|gb|EEM14463.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus pseudomycoides
           DSM 12442]
          Length = 170

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+L S  AII   L++ +   ++ + +L+F F++ AGL+ LL AEFV +  +++Y GA+ 
Sbjct: 4   FFLLSLTAIIGGILMLNLTKVMHMMLALVFTFLSIAGLYFLLSAEFVGVAQILIYSGAIT 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   D E       R +L  FF  ++   ++  A N + F+       +   
Sbjct: 64  IIMIFGIMLTKHDAENESSFSFRKWL-IFFAVVVFGGVMYFAVNNIDFTNRSVQGSVPLH 122

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             N   IG +LY++Y  P E++  ILL++++GAIVL    ++D K  D
Sbjct: 123 EQNTLQIGTLLYSKYVIPFELTSVILLVALVGAIVLA---KKDEKEGD 167


>gi|50261311|ref|YP_052920.1| NADH dehydrogenase subunit 6 [Saprolegnia ferax]
 gi|48237624|gb|AAT40673.1| NADH dehydrogenase subunit 6 [Saprolegnia ferax]
          Length = 233

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 38/225 (16%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF+LFS +A+ S+  V+  +N +YSVF LI  F N  GL L+   EF+A++ +++YVGA+
Sbjct: 10  FFFLFSSIALTSAIFVIYSKNTVYSVFFLILVFTNMTGLLLVAEVEFLAIMLIIIYVGAI 69

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLG------------------------SFFIGI-L 101
            V FLF++MMLDI  ++       G+L                          +FI   L
Sbjct: 70  TVLFLFVVMMLDIK-KIETNNNNYGYLPIIFLISFIFFIETFTIFSKSFTSYQYFIHKNL 128

Query: 102 AAELI--VCASNFMVFSAEGEL-----SRLVFKGN---NVENIGKVLYTQYAYPLEISGF 151
           A E    +C      +S   E      ++   K +   N+E +G++LYT  A+ L  +G 
Sbjct: 129 AMETYARLCEDWTWRYSPAYETVPYFHNQWHLKLDLITNIETLGQILYTYNAFFLLAAGL 188

Query: 152 ILLLSMIGAIVLMLRHRRDIK--RQDISKQLESNPDNSIVMVKVK 194
           ILL+++IGA+ L L+ ++D K   +++ KQL  N  N++  +K K
Sbjct: 189 ILLIALIGAVTLTLKEKKDKKFSTKNLYKQLSRNYINAVYNIKQK 233


>gi|157144286|ref|YP_001456707.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis]
 gi|157149641|ref|YP_001456721.1| NADH dehydrogenase subunit 6 [Pocillopora eydouxi]
 gi|139471334|gb|ABO77151.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis]
 gi|139471349|gb|ABO77165.1| NADH dehydrogenase subunit 6 [Pocillopora eydouxi]
 gi|169809246|gb|ACA84083.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis]
          Length = 187

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 103/186 (55%), Gaps = 13/186 (6%)

Query: 7   FFYLFSFMAIISS-FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           FF  F  + II S  +VV+  NP+ S+F L+  F+N+A  FLLLG +F+A++ L++YVGA
Sbjct: 3   FFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI-----VCASNFMVFSAEGE 120
           + + FLF+IM+L  ++    P  KR    + +I I     I     + +S  ++ S + E
Sbjct: 63  IAILFLFVIMLL--NLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLLLGSFQIE 120

Query: 121 LSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              L F       +N+E +G++LY        ++ FILL++M+G IVL        K+QD
Sbjct: 121 NWDLSFPWFLISYHNIEALGQILYVSCFCLFLLASFILLVAMMGVIVLTQETESLSKKQD 180

Query: 176 ISKQLE 181
           +  Q+ 
Sbjct: 181 LFFQIN 186


>gi|150406472|ref|YP_001315115.1| NADH dehydrogenase subunit 6 [Chlorokybus atmophyticus]
 gi|126507709|gb|ABO15106.1| NADH dehydrogenase subunit 6 [Chlorokybus atmophyticus]
          Length = 259

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 117/246 (47%), Gaps = 67/246 (27%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +   F +FS +A+IS  +V+  +NP++SV  LI  F + +GL LLLG +F AM+ LV
Sbjct: 1   MTAEQTLFSIFSSVALISGIMVIRAKNPVHSVLFLILVFCSTSGLLLLLGLDFFAMVFLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-------------------------------------IEV 83
           VYVGA+ V FLF++MML+I                                      + +
Sbjct: 61  VYVGAIAVLFLFVVMMLNIKMAEITENLLRYLPVGGLIGFIFVFEVLLVVDNDLIPLLSI 120

Query: 84  AEPRKK---------RGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRL--VFKG 128
            +PR             F    FI ++  ++ +   N     +V   E  ++ L  +F+G
Sbjct: 121 TKPRASLLTEYFQIYSTFFFQSFIALIRGKINLTEWNLDRHDLVNDLEQAITNLTTIFQG 180

Query: 129 N--------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL-MLRHRRDIKR 173
                          N+E IG+++YT Y Y   +S  ILL++MIGAI+L M +  + +KR
Sbjct: 181 TIHHNEWVSKIHNVTNIEAIGQLVYTYYFYYFLMSSLILLVAMIGAILLTMHKGMKSVKR 240

Query: 174 QDISKQ 179
           Q+I +Q
Sbjct: 241 QEIFEQ 246


>gi|323481962|ref|YP_004237305.1| NADH dehydrogenase subunit 6 [Lophelia pertusa]
 gi|323461315|emb|CBZ41203.1| NADH dehydrogenase subunit 6 [Lophelia pertusa]
          Length = 168

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 11/166 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI- 79
           +V++  NP++S F L+  F+N+A  FLLLG +F+A++ L+VYVGA+ V FLF+IM+L++ 
Sbjct: 1   MVISALNPVFSPFWLVIVFINSAVFFLLLGVDFIALMFLLVYVGAIAVLFLFVIMLLNLT 60

Query: 80  DIEVAEPRKKR--------GFL-GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           D   A  +++         GFL G FF    ++   V    F   + +     L+   +N
Sbjct: 61  DYPPAFFKREADMTNYIPIGFLIGVFFFSEASSSWFVLGP-FQKENWDLSFPWLIISYHN 119

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           +E +G+VLY        ++ FILL++MIGAI L        K Q +
Sbjct: 120 IEALGQVLYVVCCCLFILASFILLVAMIGAIFLTQDKAPLGKTQQL 165


>gi|218900420|ref|YP_002448831.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus G9842]
 gi|218543477|gb|ACK95871.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus G9842]
          Length = 174

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSLTAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E     L   
Sbjct: 68  IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            NN   IG +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 127 ENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171


>gi|41203479|ref|NP_957739.1| NADH dehydrogenase subunit 6 [Emiliania huxleyi]
 gi|33114165|gb|AAP94721.1| NADH dehydrogenase subunit 6 [Emiliania huxleyi]
          Length = 207

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 19/208 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +L FY      I S+ +V+  RNP+YSV  L+  FVN + L   L  E++ ++ +VVY
Sbjct: 1   MSTLIFYFIGTFCIFSALMVIFSRNPVYSVLFLVLTFVNVSSLLFFLELEYLPLVFIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI----------GILAAELIVCASNF 112
           VGA+ V F+F++MML+I I   +   ++  L   FI              ++     + F
Sbjct: 61  VGALAVLFIFVMMMLNIRISDLKENNEQ-LLPVIFILTAIFFFHIFFATKSDFASLKNFF 119

Query: 113 MVFSAEGEL--SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
             F+ E  L  + L+   N      N+ N+G +LY+++ Y   ++GF+LLL+M+G I+L 
Sbjct: 120 STFNNEYSLITADLMLTTNWFSFDSNMRNLGFLLYSEFFYLFILAGFVLLLAMLGTIILT 179

Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVK 192
           LR     + Q  S Q+  N + +I   K
Sbjct: 180 LRRFFKGRIQHPSFQIMRNFETAIKSTK 207


>gi|225848114|ref|YP_002728277.1| NADH-quinone oxidoreductase subunit j [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643991|gb|ACN99041.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit
           j) (ndh-1 subunit j) [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 177

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 98/170 (57%), Gaps = 7/170 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S +A++S+  VV  RN +YSV SLI A +  +GLF  LGAE +  + +++Y  A++
Sbjct: 8   FWVLSTIAVLSAIGVVFFRNIVYSVLSLISALIAISGLFFNLGAELIGALQILIYAVAIV 67

Query: 68  VFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           VF++ +I  +     E  +P  K   L + F  IL  EL   +   +  S  G  S  +F
Sbjct: 68  VFYVLVISTVPQYKGEAVDP--KYALLSAPFGFILFLELAYVSVYGLWASNTGIFSPDIF 125

Query: 127 KG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              +N + +  +L+T+Y +P E++  ILL++MIGAI+L    R+DI  ++
Sbjct: 126 NQISNAKAVATLLFTKYLFPFEVASLILLVAMIGAILL---GRKDIVEEE 172


>gi|159902716|ref|YP_001550060.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9211]
 gi|159887892|gb|ABX08106.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9211]
          Length = 200

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 13/179 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F +   + I  S  VV + N +YS F L   F+  AGL+LLL A FVA   ++VYV
Sbjct: 8   EQICFLILGLIVIGGSLGVVLLNNIVYSAFLLGGVFMGVAGLYLLLNASFVAAAQILVYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEP----RKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           GAV V  LF IM+++   E+ +P    R ++        G+L     V  +   +F    
Sbjct: 68  GAVNVLILFAIMLVNKKEEL-KPIKALRTRKILSAGVCTGLLILLFRVDITTPWIFPGPN 126

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +  L     + E IG+ L+T Y  P E++  +LL++MIGAIVL    RRD+   DI  
Sbjct: 127 SIGEL-----STERIGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVLISDIGT 177


>gi|94968335|ref|YP_590383.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550385|gb|ABF40309.1| NADH dehydrogenase subunit J [Candidatus Koribacter versatilis
           Ellin345]
          Length = 166

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + F+ F+   +  +  ++  ++PI S  SL+    + AGLFLL+GAEFV  I ++VY
Sbjct: 2   LHEILFFFFAAGCVAGAINLLAQKHPINSALSLVVVMASLAGLFLLMGAEFVGAIQVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IM+L+  +E      K     +  +G+ AA ++     +++   E   +
Sbjct: 62  AGAIMVLFVFVIMLLNAGVEEHTKSSKI----AIVLGVPAAAIVATLITWILLHNEQSFT 117

Query: 123 RLV---FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
           ++      G   E IG +L+  Y  P E++  ++L+ ++GA+V  L  + D+
Sbjct: 118 KVSIGELHGTGKE-IGMLLFGPYLLPFEVTSVLVLIGIMGAVV--LARKEDV 166


>gi|307318094|ref|ZP_07597530.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti AK83]
 gi|306896135|gb|EFN26885.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti AK83]
          Length = 166

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 94/160 (58%), Gaps = 9/160 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F LF+ ++++++  +V  RNP++S  +L+  F+  + +F++LGA  +A+I + VYVGA++
Sbjct: 6   FLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVYVGAIM 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFSAEGELSR 123
           V FLF+IMM+D+   V +     G L +  + +L       L++ +  F+      E   
Sbjct: 66  VLFLFVIMMVDVREAVLQRFMPGGNLPALALLVLLGAEMVVLVLWSDRFIESPPVAERG- 124

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
               G+ + ++ K L++ Y  P E++  ILL +++GAIVL
Sbjct: 125 ----GDAIRDLSKTLFSDYLLPFEVASVILLAALVGAIVL 160


>gi|197253931|ref|YP_002149705.1| NADH dehydrogenase subunit 6 [Stylophora pistillata]
 gi|169809260|gb|ACA84096.1| NADH dehydrogenase subunit 6 [Stylophora pistillata]
          Length = 187

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 13/186 (6%)

Query: 7   FFYLFSFMAIISS-FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           FF  F  + II S  +VV+  NP+ S+F L+  F+N+A  FLLLG +F+A++ L++YVGA
Sbjct: 3   FFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS----------NFMVF 115
           + + FLF+IM+L  ++    P  KR    + +I I     I   S          +F + 
Sbjct: 63  IAILFLFVIMLL--NLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLFLGSFQIE 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           + +      +   +N+E +G++LY        ++ FILL++MIG IVL        K+QD
Sbjct: 121 NWDLSFPWFLISYHNIEALGQILYVSCFCLFLLASFILLVAMIGVIVLTQETEFLSKKQD 180

Query: 176 ISKQLE 181
           +  Q+ 
Sbjct: 181 LFFQIN 186


>gi|297531550|ref|YP_003672825.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. C56-T3]
 gi|297254802|gb|ADI28248.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. C56-T3]
          Length = 173

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 17/175 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+L +  AI     ++ + N ++ V +L+  F+  AGL++LL AEFVA++ +++Y GA+ 
Sbjct: 8   FFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVLIYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--------FSAEG 119
           +  LF IM+     +     ++R   G  +   +AA L V A    V        F A+G
Sbjct: 68  IIMLFAIMLTRHHTD----ERERPTTGGVWHKAVAA-LSVIAFGLAVYFGIRQLDFGADG 122

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                   G+N + IGK LY+ Y  P EI   ILL+++IGAIVL  +  +  + +
Sbjct: 123 S----ALSGDNAKAIGKSLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAEDE 173


>gi|75764475|ref|ZP_00743962.1| NADH-quinone oxidoreductase chain J [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488038|gb|EAO51767.1| NADH-quinone oxidoreductase chain J [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 174

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E     L   
Sbjct: 68  IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            NN   IG +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 127 ENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171


>gi|326577457|gb|EGE27341.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis O35E]
          Length = 210

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +AI +S  VVT  N ++++ S+I + +  AG+F +LGA F  ++ ++VY GA++
Sbjct: 17  FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  +  E +    +L +    +    +++  +  + F   G    +  +
Sbjct: 77  VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAMLIGFIGYGTDQSIQLQ 133

Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
            + +  +++G  L+T Y   +E++ F+LL +++ A  L    ++ +  ++IS   ++ PD
Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHL---GKKALDDENISHS-QTCPD 189


>gi|193216256|ref|YP_001997455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089733|gb|ACF15008.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chloroherpeton thalassium ATCC 35110]
          Length = 178

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 7/174 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F+ ++++S   VV  RN IYS FSL+F F   A +++ L A+FVA+  +VVYVG ++
Sbjct: 10  FYFFAVLSVVSGMFVVFSRNIIYSAFSLLFTFFGVAAIYVFLSADFVAVTQIVVYVGGIL 69

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAEGELSRLV 125
           V  LF +M  +   +V        F+    I    + A L         F  E E+S   
Sbjct: 70  VLLLFGVMFTNKIYQVQLKTDVLNFIPGLLIMLATMGALLYTMIYRANWFHGEKEIS--- 126

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             G  VE IG  + + Y  P EI+  +LL+++IGA  L         ++    Q
Sbjct: 127 --GTVVEQIGVEIMSNYVLPFEIASIVLLVALIGAAFLARAEHHHPAQESGENQ 178


>gi|32267093|ref|NP_861125.1| NADH dehydrogenase subunit J [Helicobacter hepaticus ATCC 51449]
 gi|32263145|gb|AAP78191.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449]
          Length = 173

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 96/174 (55%), Gaps = 10/174 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLFS + I+S  +VVT +  +Y++ +L    +  +G+F +L AEF+ ++ ++VY 
Sbjct: 3   ETIAFYLFSTLCIVSFLIVVTSKRILYAMTALASGMIFISGIFFVLDAEFLGVVQIIVYS 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC-------ASNFMVFS 116
           G+V+  + F +M  D   ++ E  K    +     GI  A ++VC        SN    +
Sbjct: 63  GSVVALYAFAMMFFDTSKDIIESYKNEWVVCILCFGI--AVVLVCIFGMPLLGSNLEAVA 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
               L  +  + NN++ IG +++T+Y  P EI+ F+LL++M+  I+L ++    
Sbjct: 121 DSQNLLNIA-EMNNIQMIGYIIFTKYLIPFEIAAFMLLVAMVVGIILSIKRSEQ 173


>gi|30023327|ref|NP_834958.1| NADH dehydrogenase subunit J [Bacillus cereus ATCC 14579]
 gi|218235796|ref|YP_002370069.1| NADH dehydrogenase subunit J [Bacillus cereus B4264]
 gi|296505721|ref|YP_003667421.1| NADH dehydrogenase subunit J [Bacillus thuringiensis BMB171]
 gi|29898888|gb|AAP12159.1| NADH-quinone oxidoreductase chain J [Bacillus cereus ATCC 14579]
 gi|218163753|gb|ACK63745.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus B4264]
 gi|296326773|gb|ADH09701.1| NADH dehydrogenase subunit J [Bacillus thuringiensis BMB171]
 gi|326943092|gb|AEA18988.1| NADH dehydrogenase subunit J [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 174

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E     L   
Sbjct: 68  IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            NN   IG +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 127 ENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171


>gi|74325170|ref|YP_316590.1| NADH dehydrogenase subunit 6 [Thalassiosira pseudonana]
 gi|74100236|gb|AAZ99397.1| NADH dehydrogenase subunit 6 [Thalassiosira pseudonana]
          Length = 201

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 112/200 (56%), Gaps = 15/200 (7%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +LFFY FSF+ I SS + V  +N IYSV  L+ +FV+++ +  LL  E+V++I +++YVG
Sbjct: 4   NLFFYFFSFVLITSSLMTVFSQNSIYSVLFLVLSFVSSSSILFLLECEYVSLIFIIIYVG 63

Query: 65  AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEG--- 119
           A+ V FLF++MMLDI  I + +   K    GSF  I  L   L+V  S F   +      
Sbjct: 64  AIAVLFLFVVMMLDIKTISLVKDSLKYFPFGSFIGIAFLIEILLVVPSTFEAINPYNISF 123

Query: 120 -------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML-RHRRDI 171
                    ++L +    + ++G +LYT Y     +SG ILLL+ IG + L+L R  +  
Sbjct: 124 LCNFHLDWFNKLDY-FTEIMSVGHLLYTDYLIQFLLSGNILLLATIGPVTLVLIRSIKTT 182

Query: 172 KRQDISKQLESNPDNSIVMV 191
           K+Q   KQL S   NS++ +
Sbjct: 183 KKQITFKQL-SRTYNSVLYI 201


>gi|164421209|ref|YP_001648662.1| NADH dehydrogenase subunit 6 [Igernella notabilis]
 gi|158939021|gb|ABW83942.1| NADH dehydrogenase subunit 6 [Igernella notabilis]
          Length = 175

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 4/173 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y F  +AII   +V+   N ++SV  LI AF++  G+F  L  +++A I +++YVGA+ V
Sbjct: 5   YFFILLAIICGLMVILTTNAVHSVIWLIGAFLSVTGIFFWLKXDYLAFILIIIYVGAISV 64

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IMML+++    E  K +      FI      +I+  S F+       ++ L    
Sbjct: 65  LFLFVIMMLNLNNLTNEMNKVKTLGPGLFISAFLFLIILGQSAFVGGFRWDPITCL---- 120

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +N++ IG  LY+   Y + +  +ILL++MIG IVL        K+Q++  Q+ 
Sbjct: 121 SNIQLIGIELYSGCYYLIILVSYILLVAMIGVIVLARELNSGAKKQNMYIQIN 173


>gi|163784656|ref|ZP_02179484.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880074|gb|EDP73750.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
          Length = 174

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 103/183 (56%), Gaps = 21/183 (11%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  + F++FS +A++S+   +  RN +Y+V SLI   +  +GLF  +GAE V  I L+
Sbjct: 1   MELTQIAFWIFSSLAVLSAIGTIFFRNMVYTVLSLISTLIMVSGLFFTMGAELVGAIQLL 60

Query: 61  VYVGAVIVFFLFIIMML-DIDIEVAEPRK-----KRG---FLGSFFIGILAAELIVCASN 111
           +Y  A++VF++ +I  + +   +  +P+        G   FL   ++ I  A      SN
Sbjct: 61  IYAVAIVVFYVLVISTVPEFKGKAVDPKYMLLSIPVGFLIFLELAYVSIYGA----WKSN 116

Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
             +FS E     ++ K  N + +G +L+T+Y +P E++  ILL++MIGAI++    R++ 
Sbjct: 117 TGIFSTE-----VIDKIGNAKAVGTMLFTKYLFPFEVASLILLVAMIGAIII---GRKEE 168

Query: 172 KRQ 174
           K++
Sbjct: 169 KQE 171


>gi|206970330|ref|ZP_03231283.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH1134]
 gi|206734907|gb|EDZ52076.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH1134]
          Length = 174

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E     L   
Sbjct: 68  IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVGFANESTQGSLPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            NN   IG +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 127 ENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171


>gi|326561575|gb|EGE11916.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis
           46P47B1]
 gi|326567947|gb|EGE18044.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC1]
          Length = 210

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +AI +S  VVT  N ++++ S+I + +  AG+F +LGA F  ++ ++VY GA++
Sbjct: 17  FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  +  E   ++ +L +    +    +++  +  + F   G    +  +
Sbjct: 77  VLFVFVIMMLNLGTDTTE---EKTWLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133

Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
            + +  +++G  L+T Y   +E++ F+LL +++ A  L    ++ +  ++IS   ++ PD
Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHL---GKKALDDENISHS-QTCPD 189


>gi|296112940|ref|YP_003626878.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis RH4]
 gi|295920634|gb|ADG60985.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis RH4]
 gi|326561164|gb|EGE11529.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 7169]
 gi|326562848|gb|EGE13136.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis
           103P14B1]
 gi|326567648|gb|EGE17756.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis
           12P80B1]
 gi|326574015|gb|EGE23964.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis CO72]
 gi|326577017|gb|EGE26912.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis
           101P30B1]
          Length = 210

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +AI +S  VVT  N ++++ S+I + +  AG+F +LGA F  ++ ++VY GA++
Sbjct: 17  FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  +  E   ++ +L +    +    +++  +  + F   G    +  +
Sbjct: 77  VLFVFVIMMLNLGTDTTE---EKTWLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133

Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
            + +  +++G  L+T Y   +E++ F+LL +++ A  L    ++ +  ++IS   ++ PD
Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHL---GKKALDDENISHS-QTCPD 189


>gi|56791580|gb|AAW30328.1| NADH dehydrogenase subunit 6 [Eschscholzia californica]
          Length = 178

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+ V 
Sbjct: 1   VLSSPALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVS 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSR 123
           FLF++MM  I I        R    S  IG IL  E+     N              L  
Sbjct: 61  FLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120

Query: 124 LVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            V  G      N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+
Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYSVRFLVPSLILLVAMIGAIVLTMHRTTKVKRQDV 178


>gi|224365671|ref|YP_002608398.1| NADH dehydrogenase subunit 6 [Vitis vinifera]
 gi|209954195|emb|CAQ77660.1| NADH dehydrogenase subunit 6 [Vitis vinifera]
 gi|239764731|gb|ACS15202.1| NADH dehydrogenase subunit 6 [Vitis vinifera]
          Length = 223

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 11/176 (6%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++
Sbjct: 28  ALVSGLMVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 87

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL------- 124
           MM  I I        R    S  IG IL  E+  I+      +   + + + L       
Sbjct: 88  MMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAE 147

Query: 125 -VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 148 KVRSWTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRR 203


>gi|306841951|ref|ZP_07474629.1| NADH dehydrogenase subunit J [Brucella sp. BO2]
 gi|306287984|gb|EFM59392.1| NADH dehydrogenase subunit J [Brucella sp. BO2]
          Length = 129

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 12/133 (9%)

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVF 126
           MMLD+D        KRG L    +G     IL  ELI V AS  F     +G L    V 
Sbjct: 1   MMLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFAPKLGQGALPIPDVA 56

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186
              N   +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ I  Q+   P+ 
Sbjct: 57  TRTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPET 116

Query: 187 SIVMVKVKSGKGI 199
           +I + KV++GKGI
Sbjct: 117 AIEIRKVETGKGI 129


>gi|326569472|gb|EGE19532.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC8]
          Length = 210

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +AI +S  VVT  N ++++ S+I + +  AG+F +LGA F  ++ ++VY GA++
Sbjct: 17  FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  +  E   ++ +L +    +    +++  +  + F   G    +  +
Sbjct: 77  VLFVFVIMMLNLGTDTTE---EKTWLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133

Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
            + +  +++G  L+T Y   +E++ F+LL +++ A  L    ++ +  ++IS   ++ PD
Sbjct: 134 SDTISAKDVGIRLFTGYVLLVEVAAFLLLGALVAAYHL---GKKALDDENISHS-QTCPD 189


>gi|126695516|ref|YP_001090402.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9301]
 gi|126542559|gb|ABO16801.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9301]
          Length = 199

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 105/189 (55%), Gaps = 18/189 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S + +I +  VV + + +YS F L   F++ AGL+LLL A FVA   ++VYV
Sbjct: 8   QIICFTILSLVILIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           GAV V  +F IM+++   D++ + + + +R    S  + +L+  + V  +N    S+   
Sbjct: 68  GAVNVLIIFAIMLVNKKEDLKPINDIKSRRIISTSICLTLLSLLIRVDLTNTWSLSSTQN 127

Query: 119 --GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             GE S +         IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DI
Sbjct: 128 SIGEESTI--------RIGEHLFSDYLLPFEVASVLLLMAMIGAIVL---ARRDVMSKDI 176

Query: 177 SKQLESNPD 185
           S  L  + +
Sbjct: 177 STGLPVDQE 185


>gi|326572765|gb|EGE22751.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC7]
          Length = 210

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +AI +S  VVT  N ++++ S+I + +  AG+F +LGA F  ++ ++VY GA++
Sbjct: 17  FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  +  E   ++ +L +    +    +++  +  + F   G    +  +
Sbjct: 77  VLFVFVIMMLNLGTDTTE---EKTWLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133

Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
            + +  +++G  L+T Y   +E++ F+LL +++ A  L    ++ +  ++IS   ++ PD
Sbjct: 134 SDTISAKDVGIRLFTGYVLLVEVAAFLLLGALVAAYHL---GKKALDDENISHS-QTCPD 189


>gi|225166014|ref|ZP_03727763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae
           bacterium TAV2]
 gi|224799739|gb|EEG18219.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae
           bacterium TAV2]
          Length = 177

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 101/184 (54%), Gaps = 11/184 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLFFY+FS +A+     VV  +N + S   L+   V+ AG+F+LL A  +A++ + VY
Sbjct: 1   MSSLFFYVFSTLALACGLGVVFNKNTVTSALCLLGVLVSLAGIFVLLEAFLLAVLLIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+  FLFI+M+ D          KR    +   G+++A L++ A+ + ++ A G   
Sbjct: 61  AGAVVALFLFIVMLTD---AAGGGGGKRFSKTTLVAGLISAVLLL-AALYSIY-AHGSFD 115

Query: 123 RLVFK---GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            +      G +++  G+ L+T Y  P++I GF+LL++M+G IV+    +++         
Sbjct: 116 TIAPAASVGASLKTYGRELFTTYLLPVQIVGFLLLIAMLGVIVI---SKKNAGESVTGTA 172

Query: 180 LESN 183
            E+N
Sbjct: 173 SEAN 176


>gi|72383361|ref|YP_292716.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL2A]
 gi|72003211|gb|AAZ59013.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL2A]
          Length = 200

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 25/202 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + S + +  S  VV + N +YS F L   F+  AGL+LLL A FVA   ++VYVGAV 
Sbjct: 12  FLILSAVIVSGSLAVVLLENIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQILVYVGAVN 71

Query: 68  VFFLFIIMMLDIDIEVAEP----RKKR----GFLGSFFIGILAAELIVCASNFMVFSAEG 119
           V  LF IM+++ + E  +P    R ++    G  G   I +L    I    N    ++ G
Sbjct: 72  VLILFAIMLVN-NKEKLKPIKGLRTRKLISGGVCGGLLILLLRVS-ITTKWNLPGPTSIG 129

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDIS 177
           E           E IG+ L+T Y  P E++  +LL++MIGAIVL    RRD  I R D++
Sbjct: 130 E--------EATERIGEHLFTDYLLPFELASILLLMAMIGAIVL---ARRDVSIPRADMN 178

Query: 178 --KQLESNPDNSIVMVKVKSGK 197
             K  +S  D  + ++   S K
Sbjct: 179 DIKNQKSLSDRKVPLLSENSIK 200


>gi|37520222|ref|NP_923599.1| NADH dehydrogenase subunit J [Gloeobacter violaceus PCC 7421]
 gi|35211215|dbj|BAC88594.1| NADH dehydrogenase subunit 6 [Gloeobacter violaceus PCC 7421]
          Length = 197

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 14/165 (8%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV +R+ ++S F L   F+ AAGL++LL A+FVA   +++YVGAV V  LF IM+++  I
Sbjct: 26  VVLLRSMVHSAFLLGLVFIGAAGLYVLLNADFVAAAQILIYVGAVNVLILFAIMLVNKRI 85

Query: 82  EVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT 140
               P    R  +       L A L VC     +F    ++   V   N V  IGK  ++
Sbjct: 86  PTDRPAFSPRNAVTGLVCAGLFALLAVC-----IFQVPWQIQEPVAM-NTVVEIGKRFFS 139

Query: 141 QYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
           ++  P E++  +LLL+M+GAI+L        +R+ +  ++E  P+
Sbjct: 140 EFLLPFEVASVLLLLAMVGAIILA-------QREYVPDRVEGEPE 177


>gi|296040753|gb|ADG85344.1| NADH dehydrogenase subunit 6 [Silene conica]
          Length = 157

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 88/157 (56%), Gaps = 11/157 (7%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A++S  +VV  +NP++SV   I  F N AGL LLLG +F AMI LVVY+GA+ V FLF+
Sbjct: 1   LALVSGLMVVRAKNPVHSVLFFILVFCNTAGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGE---LSRLVFK 127
           +MM  I I        R    S  IG I   E+  I+   N  +   +G+   L+ +V+ 
Sbjct: 61  VMMFHIQIAEIHEEVLRYLPVSGLIGLIFWWEMFFILDNENIPLLPTQGQTNSLTYMVYA 120

Query: 128 G-----NNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
           G      N+E +G +LYT Y     +S  ILL++MIG
Sbjct: 121 GKVRSWTNLETLGNLLYTHYFVWFLVSSLILLVAMIG 157


>gi|283795060|ref|YP_003359476.1| NADH dehydrogenase subunit 6 [Synedra acus]
 gi|261279716|gb|ACX62024.1| NADH dehydrogenase subunit 6 [Synedra acus]
          Length = 198

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 25/183 (13%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF+LFSF+  +SS  V+++RN I SV SLI  F+ ++ L L+L  EF A + L+VYVGA+
Sbjct: 6   FFHLFSFLLTLSSISVISLRNSIQSVVSLIVCFITSSILLLILNCEFFAFLFLIVYVGAI 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--------ILAAELIVCASNFMVFSAE 118
            V FLF++MML++     +    +  L   F+G        +L    I        +S  
Sbjct: 66  AVLFLFVLMMLEL-----KHLDNKANLFHIFLGLSVPVIFFLLTLPFIDSCFALNPYSEV 120

Query: 119 GELSRLVFKGN------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + S  +F  N            ++E +G++LYT+YA    ++G IL L+++   VL + 
Sbjct: 121 FQQSNRIFIENCFDEFYIEDDTTDIEVLGQLLYTRYALQFLLTGLILTLAVVCVGVLTID 180

Query: 167 HRR 169
            ++
Sbjct: 181 RKK 183


>gi|194476796|ref|YP_002048975.1| NADH dehydrogenase subunit J [Paulinella chromatophora]
 gi|221272340|sp|B1X496|NU6C_PAUCH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, organellar
           chromatophore; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|171191803|gb|ACB42765.1| NADH dehydrogenase subunit J [Paulinella chromatophora]
          Length = 205

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 9/198 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F+  S   I+ +  VV + N +YS F L   F++ AGL+LLL A FVA   +++YV
Sbjct: 8   QLICFFALSATLILGALGVVLLPNIVYSAFLLGSVFLSVAGLYLLLNASFVAAAQVLIYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GAV V  LF IM+++ + E+   +   G  +  FF G++   L+V        +   ++ 
Sbjct: 68  GAVNVLILFAIMLVNREEEL---KVIPGLAIRRFFSGVVCMGLLVILERIATTTHWAQVG 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK---RQDISKQ 179
            +         IG+ L++ Y  P E++  +LL++MIGAIVL  +   D+K    Q I  +
Sbjct: 125 PIPLGEEATIRIGEHLFSDYLLPFELASILLLIAMIGAIVLARKDLVDLKPIIEQRIDPK 184

Query: 180 LESNPDNSIVMVKVKSGK 197
               P +S  M + KS K
Sbjct: 185 EIKLPSSS--MFRKKSKK 200


>gi|115375207|ref|ZP_01462473.1| NADH-quinone oxidoreductase chain 10 [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818917|ref|YP_003951275.1| NADH dehydrogenase I subunit j [Stigmatella aurantiaca DW4/3-1]
 gi|115367769|gb|EAU66738.1| NADH-quinone oxidoreductase chain 10 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391989|gb|ADO69448.1| NADH dehydrogenase I, subunit J [Stigmatella aurantiaca DW4/3-1]
          Length = 167

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 94/164 (57%), Gaps = 5/164 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++   F  F+F+ + S+ +V+  ++PI+S  +L+  F   AG+++LL A  +A++ ++
Sbjct: 1   MNIEQALFGAFAFLTLFSAAVVIFAKSPIHSAMALVSTFFFLAGIYVLLWAHTLAVMQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           VY GA++V FLF+IM+L++  E   PR    R   G+  +G+ AA  I       + S  
Sbjct: 61  VYAGAIMVLFLFVIMLLNLGEEPPGPRLTLTRIIGGATALGLFAALAITLER---LPSTV 117

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            +L         +E IGK +++ + +P E    +LL+SM+G++V
Sbjct: 118 ADLGAQAQTFGTLETIGKAIFSSWLFPFEAVSLLLLVSMVGSVV 161


>gi|324329242|gb|ADY24502.1| NADH:ubiquinone oxidoreductase subunit J [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 174

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S  AII   L++ V   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSLSAIIGGILMLNVTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E     L   
Sbjct: 68  IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             N   IG +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 127 EKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171


>gi|226348833|gb|ACO50737.1| NADH dehydrogenase subunit 6 [Micromonas pusilla CCMP1545]
          Length = 263

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 1/79 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +F+F+A+++ F V+  +NP+YSV  LI  F N +G+ +LLG +F AM+ LVVY
Sbjct: 1  MTSLF-TIFAFLALVAGFCVIKAKNPVYSVLFLILVFCNVSGILVLLGLDFFAMVFLVVY 59

Query: 63 VGAVIVFFLFIIMMLDIDI 81
          VGA+ V FLF++MML++ +
Sbjct: 60 VGAIAVLFLFVVMMLNVKL 78



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           + V  +G+V+YT Y     ++  ILL++MIGAIVL +     +KRQ++  Q
Sbjct: 198 SPVAALGQVVYTYYVVFFLVASLILLVAMIGAIVLTMHKGVFVKRQEVWAQ 248


>gi|123967713|ref|YP_001008571.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. AS9601]
 gi|123197823|gb|ABM69464.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. AS9601]
          Length = 199

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 105/189 (55%), Gaps = 18/189 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S + +I +  VV + + +YS F L   F++ AGL+LLL A FVA   ++VYV
Sbjct: 8   QIICFTVLSLVILIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           GAV V  +F IM+++   D++ +++ + +R    S  + +L+  + V  +N    S    
Sbjct: 68  GAVNVLIIFAIMLVNKKEDLKPISDIKSRRIISTSICLTLLSLLIRVDLTNVWRLSNPQN 127

Query: 119 --GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             GE S +         IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DI
Sbjct: 128 SIGEESTI--------RIGEHLFSDYLLPFEVASVLLLMAMIGAIVL---ARRDVMSKDI 176

Query: 177 SKQLESNPD 185
           S  L  + +
Sbjct: 177 STGLPVDQE 185


>gi|13449312|ref|NP_085495.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
 gi|48474289|sp|P60498|NU6M_BRACM RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|12768|emb|CAA48326.1| NADH dehydrogenase subunit 6 [Brassica rapa]
 gi|6851015|emb|CAA69769.3| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
 gi|80978898|gb|ABB54698.1| NADH dehydrogenase subunit 6 [Brassica oleracea var. botrytis]
          Length = 205

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM  I I     EV       G +G  F            I +L  +    +  + V++ 
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|328953784|ref|YP_004371118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454108|gb|AEB09937.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 165

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 21/166 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+L +  A+IS  +VV   NP+ S   L+  F   AG++LL  A+F+A + ++VY GA++
Sbjct: 5   FFLLAATALISGIMVVIQVNPVRSALYLVLNFFALAGIYLLANAQFIAAVQIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLV 125
           V FLF+IM+L++     +P +         IG  IL A L    +  ++++    ++RL 
Sbjct: 65  VLFLFVIMLLNLR----QPEEGG---AQLHIGQKILGASLATGTAALVIYT----ITRLK 113

Query: 126 F---KG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
               KG        E + K L+T Y  P E++  +LL++++GA++L
Sbjct: 114 LPPGKGMAADFGTTEMVAKSLFTDYLLPFEVTSILLLVAVVGAVIL 159


>gi|296274185|ref|YP_003656816.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098359|gb|ADG94309.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcobacter
           nitrofigilis DSM 7299]
          Length = 171

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 15/173 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F   SFMAI     ++  + P+Y+   L+ + ++ +GLF LL A F+ M+ ++VY
Sbjct: 1   MTDILFIGLSFMAIAGGLTMLIHKQPMYAALGLLISILSVSGLFALLSATFLFMVQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GA++   LFI+M L+ID      EP+K R         I+   +++   N ++ +A   
Sbjct: 61  AGAIMTLLLFILMFLNIDEHDLPKEPKKVR--------NIIIGAIVMLPLNIVILTAVSA 112

Query: 121 LSRL---VFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           L +    + + N   ++ IG +LY  +    E+   +LL++++GAIVL  R +
Sbjct: 113 LPKKDMSIIETNFGGIKEIGMLLYQNWLISFELISILLLVALVGAIVLAKRKK 165


>gi|94968320|ref|YP_590368.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550370|gb|ABF40294.1| NADH dehydrogenase subunit J [Candidatus Koribacter versatilis
           Ellin345]
          Length = 169

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 95/166 (57%), Gaps = 9/166 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V    FFY  + +++ S+  V+  +N ++S   LIF  +  AGL+L+L A FVA + +++
Sbjct: 4   VATPFFFYFLAALSVGSALGVILRKNAVHSAIFLIFTLLAQAGLYLMLYAPFVAGVQIIL 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           Y G ++V FLF+IM+++++  + E +  K+   GS    +    L++   N       G 
Sbjct: 64  YAGGIMVLFLFVIMLVNLERSLKEEQFNKQWLAGSAVAALFGVMLLLIYRN-----GGGT 118

Query: 121 L--SRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
              +R +  + +N ++IG +LY  Y  P E++  +LL++++GA+V+
Sbjct: 119 FPSTRAILPEASNTQDIGVMLYRNYMLPFEVASLLLLVAIVGAVVM 164


>gi|257852744|gb|ACV71384.1| NADH dehydrogenase subunit 6 [Peridiscus lucidus]
          Length = 178

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLG------SFF------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G       FF      I +L  ++   +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLQTQINTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|15606571|ref|NP_213951.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5]
 gi|2983792|gb|AAC07350.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5]
          Length = 178

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 3/179 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ + L F  FS +AI+S   ++T+RNP+Y V +L+ + +  AG+F   GAE V  + L+
Sbjct: 1   MMGRLLIFGFFSILAILSGIGIITLRNPVYVVVALLSSLIAVAGIFFTAGAELVGALQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAE 118
           +Y  A+ VF++ +I  +  +         R  G +    +  L  E+IV     +  S E
Sbjct: 61  IYAVAIAVFYIIVISAVPWEKAKKSESHYRFEGLISLPVVLFLYIEMIVVFLLGVKASPE 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           G++++ + K  N E IG +L+++Y    E+   +LL+ MIGA VL+ R        D +
Sbjct: 121 GKIAKFIEKFGNTEVIGAILFSKYFLAFEVVSIVLLMGMIGA-VLIGRKESQTYEDDTA 178


>gi|239828577|ref|YP_002951201.1| NADH dehydrogenase subunit J [Geobacillus sp. WCH70]
 gi|239808870|gb|ACS25935.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. WCH70]
          Length = 173

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 3/175 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + L F + + +AII   L++ +   ++ V +L+F F++ AGL++LL AEFVA + ++
Sbjct: 1   MSGEYLAFLVLALVAIIGGVLMLNLTKVVHMVIALVFTFISIAGLYVLLSAEFVAAVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-G 119
           +Y GA+ +  LF IM+     E  E     GF    F  I A      A    ++  + G
Sbjct: 61  IYSGAITIIMLFGIMLTRHREEEKEETTTGGFWRKTFTAI-AVSAFGIAVYLGIYQLDFG 119

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           E +  + + NN E IG  LY+ Y  P EI+  ILL++++GAI+L  ++ +   ++
Sbjct: 120 EEAANLHE-NNTEQIGLALYSHYIIPFEITSIILLVALVGAIILAKKNDKGAPKK 173


>gi|284039759|ref|YP_003389689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma
           linguale DSM 74]
 gi|283819052|gb|ADB40890.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma
           linguale DSM 74]
          Length = 185

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 29/191 (15%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L FY F+ + +  +  V+  RN +Y+ F L+      AGLF+L GA+F+A+  +++Y
Sbjct: 1   MVQLAFYFFAALTLGGALAVLLTRNVLYAAFFLLLTLFGVAGLFVLAGADFLAVAQIMIY 60

Query: 63  VGAVIVFFLFIIMMLD-----IDIEVAEPR---------KKRGFL------GSFFIGILA 102
           VG V+V  +F +M+        D+   +P          K  G++      G+ F+ +  
Sbjct: 61  VGGVLVLVIFGVMLTHKPEPPTDLNSQQPNRIVSANRFAKGAGWIIPVLVAGALFVAL-- 118

Query: 103 AELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + ++  SNF +              N    IGK L T+Y  P EI+G +LL +++GA  
Sbjct: 119 -QTLLARSNFALLDQPAGWQ------NTTTVIGKQLMTEYVVPFEIAGILLLAALVGATY 171

Query: 163 LMLRHRRDIKR 173
           L   H +  + 
Sbjct: 172 LAASHTKSSRH 182


>gi|78778546|ref|YP_396658.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9312]
 gi|78712045|gb|ABB49222.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9312]
          Length = 199

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 103/187 (55%), Gaps = 14/187 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S + +I +  VV + + +YS F L   F++ AGL+LLL A FVA   ++VYV
Sbjct: 8   QIICFIVLSLVVLIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEP----RKKRGFLGSFFIGILAAELIVCASN-FMVFSAE 118
           GAV V  +F IM+++   E  +P    + +R    S  + +L+  + V  +N + + S E
Sbjct: 68  GAVNVLIIFAIMLVN-KKEDLKPINNIKSRRIISTSICLTLLSLLIRVDLTNVWRLASPE 126

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             +        +   IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DIS 
Sbjct: 127 NSIGE-----ESTIRIGEHLFSDYLLPFELASVLLLMAMIGAIVL---ARRDVMNKDIST 178

Query: 179 QLESNPD 185
            L  + +
Sbjct: 179 GLPVDQE 185


>gi|295400700|ref|ZP_06810677.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112606|ref|YP_003990922.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. Y4.1MC1]
 gi|294977281|gb|EFG52882.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217707|gb|ADP76311.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. Y4.1MC1]
          Length = 173

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 3/160 (1%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           II   L++ +   ++ V +L+F F++ AGL++LL AEFVA + +++Y GA+ +  LF IM
Sbjct: 16  IIGGVLMLNLSKVVHMVTALVFTFISIAGLYVLLSAEFVAAVQVLIYSGAITIIMLFGIM 75

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-GELSRLVFKGNNVENI 134
           +     E  E     GF       I A      A    V+  + GE +  + +  N E I
Sbjct: 76  LTRHREEDKENTTTGGFWRKTATAI-AVFAFGAAVYLGVYQLDFGEKAERLHE-KNTEQI 133

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           G  LY+ Y  P EI+  ILL++++GAI+L  +  R+ +++
Sbjct: 134 GVALYSHYIIPFEITAVILLVALVGAIILAKKDDREAQKK 173


>gi|255535804|ref|YP_003096175.1| NADH-ubiquinone oxidoreductase chain J [Flavobacteriaceae bacterium
           3519-10]
 gi|255342000|gb|ACU08113.1| NADH-ubiquinone oxidoreductase chain J [Flavobacteriaceae bacterium
           3519-10]
          Length = 164

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 104/179 (58%), Gaps = 25/179 (13%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F+  + +A+ S+   V  RNP+Y++ +LI  F + A +++LL A+F+ ++ ++VY
Sbjct: 1   MEQVIFFSVAAIALASAVYFVIARNPLYAILALIVTFFSIAAMYILLNAQFLGIVQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG---FLGSF-----FIGILAA--ELIVCASNF 112
            GA++V FL+I+MML+++   A+  KK+    F+G F     FIG+L A   L       
Sbjct: 61  AGAIMVLFLYILMMLNLN--RADESKKQNLTKFIGVFAACILFIGLLGAYKGLGTGTYGT 118

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
            V S+ G            +N+G++L+ +Y  P E++  ++L  ++GA+++    ++D+
Sbjct: 119 GVDSSIGL----------TKNLGRLLFNEYVLPFELASILILAGIVGAVLI---GKKDL 164


>gi|56791560|gb|AAW30318.1| NADH dehydrogenase subunit 6 [Laurus nobilis]
          Length = 182

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +VV  +NP++ V   I  F + +GL LLLG +F AMI+ VV++GA+   
Sbjct: 1   VLSSPALVSGLMVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAAS 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSR 123
           FLF++MM +I I        R    S  IG IL  E+     N              L  
Sbjct: 61  FLFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120

Query: 124 LVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            V  G      N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ +
Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFR 180

Query: 179 Q 179
           +
Sbjct: 181 R 181


>gi|291010624|ref|YP_003495129.1| NADH dehydrogenase subunit 6 [Pycnococcus provasolii]
 gi|258406747|gb|ACV72093.1| NADH dehydrogenase subunit 6 [Pycnococcus provasolii]
          Length = 199

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 11/188 (5%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A  + FLV++ ++P++SV SLIF+FV  + + L L  + +A+I L+VYVGA+ + FLF+
Sbjct: 14  LACGAGFLVISSKSPVHSVLSLIFSFVLCSFVLLTLEIDILALIFLIVYVGAIAILFLFV 73

Query: 74  IMMLDIDIEVAEPRKKRGF-LGSFFIGIL--------AAELIVCASNFMVFSAEGELSRL 124
           +M+L++ +  A     + F LG F + +L         A   V  ++F+ F  E   + L
Sbjct: 74  VMILNVKVAEARANLFQYFPLGFFLLSLLYFDLGLLMPASFSVDVAHFIPFYLEWPKAVL 133

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
            F    +E+IG +LYT + + L  +G +LLL+++GAI+L L     + RQ++S Q   + 
Sbjct: 134 SF--GCLESIGFLLYTYFPFYLIGAGLLLLLAIVGAILLTLHRGVGVHRQEVSFQNRRDW 191

Query: 185 DNSIVMVK 192
              + MV+
Sbjct: 192 VEVLHMVQ 199


>gi|257852644|gb|ACV71334.1| NADH dehydrogenase subunit 6 [Lacistema aggregatum]
          Length = 178

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+ V FLF++MM +I 
Sbjct: 3   MVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVVMMFNIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSRLVFKG-----N 129
           I        R    S  IG IL  E+     N              L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|133900492|gb|ABO41412.1| NADH dehydrogenase subunit 6 [Malesherbia linearifolia]
          Length = 179

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 92/170 (54%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+  I+   +  +   + + + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRR 172


>gi|33239634|ref|NP_874576.1| NADH dehydrogenase subunit J [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237159|gb|AAP99228.1| NAD(P)H-quinone oxidoreductase chain 6 [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 200

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 11/171 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F + + + I  S  VV + N +YS F L   F++ AGL+LLL A FVA   ++VYV
Sbjct: 8   EQICFLILASVIISGSLGVVLIENIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           GAV V  LF IM+++   E   +A  + +R F G    G+LA  L+   +    ++  G 
Sbjct: 68  GAVNVLILFAIMLVNKREELKPIAGLQIRRFFSGCVCAGLLA--LLFRVNLTTKWATPGP 125

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
            +         E IG+ L+T Y  P E++  +LL++MIGAIVL    RRD+
Sbjct: 126 QA---IGEEATERIGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDV 170


>gi|56791556|gb|AAW30316.1| NADH dehydrogenase subunit 6 [Calycanthus floridus]
          Length = 178

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 95/181 (52%), Gaps = 27/181 (14%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++ V   I  F + +GL LLLG +F AMI+LVV++GA+   FLF++
Sbjct: 5   ALVSGLMVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISLVVHIGAIAASFLFVV 64

Query: 75  MMLDIDIEVAEPRKK-------RGFLGSFF------------IGILAAELIVCASNFMVF 115
           MM    I++AE  ++        G +G  F            I +L       +  + V 
Sbjct: 65  MMF--HIQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVH 122

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           + +      V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD
Sbjct: 123 AGK------VRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQD 176

Query: 176 I 176
           +
Sbjct: 177 V 177


>gi|257852664|gb|ACV71344.1| NADH dehydrogenase subunit 6 [Aporusa frutescens]
          Length = 178

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI +Q
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRQ 172


>gi|257852666|gb|ACV71345.1| NADH dehydrogenase subunit 6 [Croizatia brevipetiolata]
          Length = 178

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV  LI  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFLILVFCDTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+  I+   +  +   +G  + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQGNTTSLRYTVYAGKVGSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +   + +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKKVKRQDIFRR 172


>gi|311033313|ref|ZP_07711403.1| NADH dehydrogenase subunit J [Bacillus sp. m3-13]
          Length = 179

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 11/174 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F   +  AI    L++ +   ++ V +L+F F++ AG++++L AEFVA + +++Y GA+ 
Sbjct: 10  FLFLAIAAIAGGVLMLNLTKVVHMVVALVFTFISIAGIYVMLSAEFVAAVQILIYSGAIT 69

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAE-GELSRLV 125
           +  LF IM+   + E       R  L G+  +G  A         F ++S + G      
Sbjct: 70  IIMLFGIMLTRHNDESETSGLGRKILVGAGVLGFAA------VMYFGLYSLDLGSQESAD 123

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
              NN E IG  +Y +Y  P E++  ILL++++GAI+L    RRD +  D+ K+
Sbjct: 124 LHVNNTEQIGVAIYAKYVIPFELTSVILLVALVGAIILA---RRDDEDTDVIKE 174


>gi|196039591|ref|ZP_03106896.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           NVH0597-99]
 gi|196029751|gb|EDX68353.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           NVH0597-99]
          Length = 174

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSLFAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E     L   
Sbjct: 68  IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             N   IG +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 127 EKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171


>gi|163942982|ref|YP_001647866.1| NADH dehydrogenase subunit J [Bacillus weihenstephanensis KBAB4]
 gi|163865179|gb|ABY46238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           weihenstephanensis KBAB4]
          Length = 174

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   + E       R ++  FF  +    ++  A N + FS +     L   
Sbjct: 68  IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNQSTQGSLPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            NN   IG +LY++Y  P E++  ILL++++GAI+L    ++D   +D
Sbjct: 127 ENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEGEED 171


>gi|257852598|gb|ACV71311.1| NADH dehydrogenase subunit 6 [Acalypha californica]
          Length = 178

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172


>gi|78213918|ref|YP_382697.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9605]
 gi|78198377|gb|ABB36142.1| NADH dehydrogenase I chain 6 (or J) [Synechococcus sp. CC9605]
          Length = 199

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 11/172 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + S + +I +  VV + N +YS F L   F   AGL+LLL A FVAM  ++VYVGA+ 
Sbjct: 12  FLVLSAVVVIGALGVVLLSNIVYSAFLLGGVFTAVAGLYLLLNASFVAMAQILVYVGAIN 71

Query: 68  VFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           V  LF IM+++   D++ +A    +R        G++A  L+V       +S  G ++  
Sbjct: 72  VLILFAIMLVNKREDLKAIANLTTRRVVSAGVCAGLMA--LLVRVVVTTPWSLPGPVA-- 127

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                    IG+ L+T Y  P E++  +LL++MIGAIVL    RRD+   D+
Sbjct: 128 -VGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVL---ARRDVLATDV 175


>gi|133900414|gb|ABO41373.1| NADH dehydrogenase subunit 6 [Celastrus orbiculatus]
          Length = 179

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SVF  I  F++ +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVFFPILVFLDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLGYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|42784464|ref|NP_981711.1| NADH dehydrogenase subunit J [Bacillus cereus ATCC 10987]
 gi|118480335|ref|YP_897486.1| NADH dehydrogenase subunit J [Bacillus thuringiensis str. Al Hakam]
 gi|196045757|ref|ZP_03112987.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           03BB108]
 gi|206976921|ref|ZP_03237823.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           H3081.97]
 gi|217962783|ref|YP_002341359.1| NADH dehydrogenase subunit J [Bacillus cereus AH187]
 gi|222098765|ref|YP_002532823.1| NADH dehydrogenase subunit j [Bacillus cereus Q1]
 gi|225867271|ref|YP_002752649.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           03BB102]
 gi|301056761|ref|YP_003794972.1| NADH dehydrogenase subunit J [Bacillus anthracis CI]
 gi|42740396|gb|AAS44319.1| NADH dehydrogenase I, J subunit [Bacillus cereus ATCC 10987]
 gi|118419560|gb|ABK87979.1| NADH dehydrogenase subunit J [Bacillus thuringiensis str. Al Hakam]
 gi|196023588|gb|EDX62265.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           03BB108]
 gi|206744887|gb|EDZ56292.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           H3081.97]
 gi|217062987|gb|ACJ77237.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH187]
 gi|221242824|gb|ACM15534.1| NADH dehydrogenase I, J subunit [Bacillus cereus Q1]
 gi|225787352|gb|ACO27569.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           03BB102]
 gi|300378930|gb|ADK07834.1| NADH dehydrogenase subunit J [Bacillus cereus biovar anthracis str.
           CI]
          Length = 174

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E     L   
Sbjct: 68  IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             N   IG +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 127 EKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171


>gi|256422827|ref|YP_003123480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga
           pinensis DSM 2588]
 gi|256037735|gb|ACU61279.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga
           pinensis DSM 2588]
          Length = 172

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 99/171 (57%), Gaps = 6/171 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FYL S +AII++ +V+T  +PI+++  L+ +F+  A +FL LGA F A + ++VY G
Sbjct: 2   PILFYLSSAVAIIATMMVITRYHPIHALLYLVVSFLAIAMVFLSLGAPFAAALEVIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAEGELS 122
           A++V F+F++MML++  E A  ++K     + +I  GIL   L++  S  ++   + +++
Sbjct: 62  AIMVLFIFVVMMLNLGKETAA-QEKDWLRPAVWIGPGILTLILLMEMSILLLAPPQRDVA 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             V     V      LY +Y   +E+ GF+L   ++GA  +  + ++ + R
Sbjct: 121 MAVVTPRQV---ALSLYGEYIIAVELIGFLLTTGIVGAAHIGKQKKKSLHR 168


>gi|302543435|ref|ZP_07295777.1| NADH dehydrogenase I, J subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461053|gb|EFL24146.1| NADH dehydrogenase I, J subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 295

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 102/201 (50%), Gaps = 24/201 (11%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   + +R  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 16  EAVQFWVLGTVAVIGALCTILMRKAVHSALSLAGTMIVLAVFYLANGAYFLGVVQIVVYT 75

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---ELIVCA----SNFMVFS 116
           GA+++ FLF++M++ +    A    K    G  ++  L      +++CA    ++   F 
Sbjct: 76  GAIMMLFLFVVMLVGV---TAADSLKETLKGQRWLAALCGLGFGILLCAGIGNASLKTFD 132

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             G+ +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R   
Sbjct: 133 GLGQAN----SGGNVEGLAALVFTKYVFAFEITGALLITAAVGAMVLTHRERTERARSQR 188

Query: 177 SKQLESNPDNSIVMVKVKSGK 197
            +  E          +V++GK
Sbjct: 189 EQSEE----------RVRTGK 199


>gi|30265317|ref|NP_847694.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Ames]
 gi|47530855|ref|YP_022204.1| NADH dehydrogenase subunit J [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188130|ref|YP_031383.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Sterne]
 gi|49481260|ref|YP_039285.1| NADH dehydrogenase subunit J [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140267|ref|YP_086563.1| NADH dehydrogenase subunit J [Bacillus cereus E33L]
 gi|65317270|ref|ZP_00390229.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J)
           [Bacillus anthracis str. A2012]
 gi|165870029|ref|ZP_02214686.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0488]
 gi|167636384|ref|ZP_02394684.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0442]
 gi|167641713|ref|ZP_02399957.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0193]
 gi|170689349|ref|ZP_02880543.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0465]
 gi|170708833|ref|ZP_02899268.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0389]
 gi|177654088|ref|ZP_02936098.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0174]
 gi|190567786|ref|ZP_03020698.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036274|ref|ZP_03103672.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus W]
 gi|218906471|ref|YP_002454305.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH820]
 gi|227818057|ref|YP_002818066.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           CDC 684]
 gi|229602758|ref|YP_002869509.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0248]
 gi|254686283|ref|ZP_05150142.1| NADH dehydrogenase subunit J [Bacillus anthracis str. CNEVA-9066]
 gi|254724279|ref|ZP_05186063.1| NADH dehydrogenase subunit J [Bacillus anthracis str. A1055]
 gi|254735222|ref|ZP_05192931.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744426|ref|ZP_05202106.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Kruger B]
 gi|254755730|ref|ZP_05207763.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Vollum]
 gi|254759537|ref|ZP_05211562.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Australia 94]
 gi|30259995|gb|AAP29180.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           Ames]
 gi|47506003|gb|AAT34679.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49182057|gb|AAT57433.1| NADH dehydrogenase I, J subunit [Bacillus anthracis str. Sterne]
 gi|49332816|gb|AAT63462.1| NADH dehydrogenase I, subunit J (NADH-quinone oxidoreductase, chain
           J) [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51973736|gb|AAU15286.1| NADH dehydrogenase I, subunit J (NADH-quinone oxidoreductase, chain
           J) [Bacillus cereus E33L]
 gi|164714352|gb|EDR19872.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0488]
 gi|167510338|gb|EDR85740.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0193]
 gi|167528218|gb|EDR91000.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0442]
 gi|170126233|gb|EDS95125.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0389]
 gi|170666717|gb|EDT17486.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0465]
 gi|172080971|gb|EDT66050.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0174]
 gi|190561202|gb|EDV15175.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991066|gb|EDX55036.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus W]
 gi|218535828|gb|ACK88226.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH820]
 gi|227005897|gb|ACP15640.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           CDC 684]
 gi|229267166|gb|ACQ48803.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0248]
          Length = 174

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E     L   
Sbjct: 68  IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESAQGSLPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             N   IG +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 127 EKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171


>gi|157412515|ref|YP_001483381.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9215]
 gi|254525620|ref|ZP_05137672.1| NADH dehydrogenase i chain 6 (or j) [Prochlorococcus marinus str.
           MIT 9202]
 gi|157387090|gb|ABV49795.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9215]
 gi|221537044|gb|EEE39497.1| NADH dehydrogenase i chain 6 (or j) [Prochlorococcus marinus str.
           MIT 9202]
          Length = 199

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 104/189 (55%), Gaps = 18/189 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S + +I +  VV + + +YS F L   F++ AGL+LLL A FVA   ++VYV
Sbjct: 8   QFICFTVLSLVVLIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           GAV V  +F IM+++   D++ + + + +R    S  + +L+  + V  +N    S    
Sbjct: 68  GAVNVLIIFAIMLVNKKEDLKPINDIKSRRIISTSICLTLLSLLIRVDLTNVWNLSIPEN 127

Query: 119 --GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             GE S +         IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DI
Sbjct: 128 SIGEESTI--------RIGEHLFSDYLLPFEVASVLLLMAMIGAIVL---ARRDVMSKDI 176

Query: 177 SKQLESNPD 185
           S  L  + +
Sbjct: 177 STGLPVDQE 185


>gi|133900564|gb|ABO41448.1| NADH dehydrogenase subunit 6 [Trigonia nivea]
          Length = 179

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129
           I        R    S  IG IL  E+     N  +     +   + L        V    
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEIFFILDNETIPLLPTQRNTTSLRYTIYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|56791564|gb|AAW30320.1| NADH dehydrogenase subunit 6 [Berberis bealei]
          Length = 179

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++
Sbjct: 5   ALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 64

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSRLVFKG 128
           MM  I I        R    S  IG IL  E+     N              L   V  G
Sbjct: 65  MMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYTVHAG 124

Query: 129 -----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                 N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+
Sbjct: 125 KIRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDV 177


>gi|51892733|ref|YP_075424.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM
           14863]
 gi|51856422|dbj|BAD40580.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM
           14863]
          Length = 168

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 8/166 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F +   MA+     V+  + P+Y V S +FAF+  A L+L L +EF+A+I L+VY GA++
Sbjct: 5   FIIAGLMAVAGVLGVILAKPPVYQVMSTVFAFLGLAALYLSLQSEFLAVIQLIVYGGAIM 64

Query: 68  VFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           + FLF+I +L      +E    +  R  L  + +G     L+V  +   +F  EG +   
Sbjct: 65  ILFLFVITLLTARRDPVEKDAGQLTRPKLIGYAVG---GALLVMLAIVGLFGGEGRIGWT 121

Query: 125 VFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               +   V+  G  L T   +P EI  FIL++++IG ++L+ RHR
Sbjct: 122 QVPADFGQVKAFGYELLTTNVFPFEILAFILMVAVIGVMLLVGRHR 167


>gi|224178046|ref|YP_002600968.1| subunit 6 of NADH-plastoquinone oxidoreductase [Pyramimonas
           parkeae]
 gi|215882713|gb|ACJ71086.1| subunit 6 of NADH-plastoquinone oxidoreductase [Pyramimonas
           parkeae]
          Length = 172

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 5/171 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q   F +F+F++I  S  VV   N +Y+ F L    V+ AG +LLL A+F+A   ++
Sbjct: 1   MNLQDFCFSIFTFLSITGSLGVVFFPNLVYAAFFLGVTLVSVAGFYLLLNADFLAAAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAE 118
           +YVG + +  LF IM++D +  V  P  K+     F+I  G LA  L +  +  +++   
Sbjct: 61  LYVGGINILILFAIMLVDANARVTRPDSKKT--NPFWIVQGSLAVGLFLLLTK-VIYITP 117

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                 +   N V  IG+ +++ + +P E+   +LL+++IG +VL  R + 
Sbjct: 118 WPSPPFIPVTNTVYFIGRHIFSDFLFPFELVSILLLIALIGVVVLAKREQN 168


>gi|118340560|gb|ABK80610.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           subunit J [uncultured marine Nitrospinaceae bacterium]
          Length = 169

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 90/163 (55%), Gaps = 2/163 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L FY  +   ++ +  VV   +P+ S  SLI   +  AG+F+L  A F+A++ +++Y
Sbjct: 1   MELLIFYPLAGFCVVLALGVVFNNSPVGSAISLIGMMLGLAGIFILQQAHFIAILQIIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GA++V F+F+IM+L++    +     ++R  L S   GILA  ++   S+ +       
Sbjct: 61  AGAIMVLFMFVIMLLNLKKGDDAGWISRERNLLLSVLTGILATGILYKVSDIIFTRKMNT 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            + L      V  IG+ L+T +  P E++  +LL +M+GA+VL
Sbjct: 121 PAILTDSFGTVAVIGETLFTDFVLPFEVASILLLAAMVGAVVL 163


>gi|133900460|gb|ABO41396.1| NADH dehydrogenase subunit 6 [Goupia glabra]
          Length = 179

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI+    F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900566|gb|ABO41449.1| NADH dehydrogenase subunit 6 [Turnera ulmifolia]
          Length = 178

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 93/170 (54%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+  I+   +  +   + + + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRR 172


>gi|320160248|ref|YP_004173472.1| NADH-quinone oxidoreductase subunit J [Anaerolinea thermophila
           UNI-1]
 gi|319994101|dbj|BAJ62872.1| NADH-quinone oxidoreductase chain J [Anaerolinea thermophila UNI-1]
          Length = 179

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 107/184 (58%), Gaps = 15/184 (8%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F++ +F+A+  +  ++  RN +YS   L+  F   A L+L+LGA F+A+  + VY G
Sbjct: 2   TIVFFVLAFVAVGCAISMLITRNAVYSALFLVLNFATVAILYLILGAPFIALSQITVYAG 61

Query: 65  AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           +VIV FLF++M+L  + +  AEP + + F+      +LA  L      + V    G+L  
Sbjct: 62  SVIVLFLFVVMLLGAERLPGAEPLRWQRFIAMGLGLVLAVNL-----GWSVVQRAGDLGV 116

Query: 124 LVFK----GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM----LRHRRDIKRQD 175
           +       G  VE +G+VL+TQY  P++I  FILL++++GA+VL     +  RR++ R+ 
Sbjct: 117 ITAPEKGFGAPVE-VGRVLFTQYVLPIQIVAFILLVAVVGAVVLARSEEISRRRELYRKP 175

Query: 176 ISKQ 179
            +K+
Sbjct: 176 EAKE 179


>gi|257852616|gb|ACV71320.1| NADH dehydrogenase subunit 6 [Moultonianthus leembruggianus]
          Length = 178

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|188996810|ref|YP_001931061.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931877|gb|ACD66507.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 176

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 102/181 (56%), Gaps = 7/181 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ F++ S +A+IS+  VV  RN +Y+V SLI   +  +GLF  LGAE V  + ++
Sbjct: 1   MELSAVAFWVLSTIAVISAIGVVFFRNIVYAVLSLISTLIAISGLFFNLGAELVGALQIL 60

Query: 61  VYVGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +Y  A++VF++ +I  +     +  +P  K   L   F  IL  EL   +   +  S +G
Sbjct: 61  IYAVAIVVFYVLVISTVPQYKGQAIDP--KYTLLSLPFGFILFLELAYVSIYGLWASNKG 118

Query: 120 ELSRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             S  +F K +N + +  +L+T+Y +P E++  ILL++MIGAI+L    R+DI   +   
Sbjct: 119 IFSPDIFTKISNAKAVASLLFTKYLFPFEVASLILLVAMIGAILL---GRKDIVEDEEGG 175

Query: 179 Q 179
           Q
Sbjct: 176 Q 176


>gi|319955926|ref|YP_004167189.1| NADH dehydrogenase subunit j [Nitratifractor salsuginis DSM 16511]
 gi|319418330|gb|ADV45440.1| NADH dehydrogenase subunit J [Nitratifractor salsuginis DSM 16511]
          Length = 186

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 106/194 (54%), Gaps = 19/194 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTV--RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++  FY F+   +I++  +VTV  +N +Y++ SL    V  +GLF +LGA+F+ ++ L+
Sbjct: 1   METFAFYFFA--VLITALFLVTVLSQNILYAMTSLAAGMVLISGLFFILGADFLGVVQLI 58

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VYVGAV+  + F +M  D    + E       +  F +G L A ++V      +F+A   
Sbjct: 59  VYVGAVMALYAFAMMFFDATGRIKERHSHPALV--FLLGGLTAVMLVV-----IFAAPQI 111

Query: 119 GELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKR 173
           G   + +F      +N   +G VL+T+Y  P E++  +LL++MI  I+L  +   R + +
Sbjct: 112 GHNIQALFPTADGMDNPHAVGLVLFTKYLVPFEVAAVMLLVAMIAGIILAGKKMERSLSK 171

Query: 174 QDISKQLESNPDNS 187
            D SK LE++ +  
Sbjct: 172 IDDSK-LETSDEKD 184


>gi|257852650|gb|ACV71337.1| NADH dehydrogenase subunit 6 [Lophopyxis maingayi]
          Length = 178

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F   +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLG------SFF------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G       FF      I +L  +    +  +MV++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYMVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +   + +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTKRVKRQDIFRR 172


>gi|138896927|ref|YP_001127380.1| NADH dehydrogenase subunit J [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268440|gb|ABO68635.1| NADH dehydrogenase I, J subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 173

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 10/168 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+L +  AI     ++ + N ++ V +L+  F+  AGL++LL AEFVA++ +++Y GA+ 
Sbjct: 8   FFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVLIYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFF--IGILAAELIVC-ASNFMVFSAEGELSRL 124
           +  LF IM+     +  E +   G        I +LA  L V      + F A+G     
Sbjct: 68  IIMLFAIMLTRHHADDKERQTTGGVWHRAVAAISVLAFGLAVYFGIRRLDFGADGS---- 123

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               +N   IGK LY+ Y  P EI   ILL+++IGAIVL    ++D K
Sbjct: 124 ALAADNAREIGKWLYSYYTIPFEIVSVILLVALIGAIVLA---KKDGK 168


>gi|266679|sp|Q00243|NU6C_PLEBO RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName:
           Full=NAD(P)H dehydrogenase I, chain 6; AltName:
           Full=NDH-1, chain 6
 gi|441181|dbj|BAA00816.1| NADH-ubiquinone oxidoreductase chain 6 homolog [Leptolyngbya
           boryana IAM M-101]
          Length = 199

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 14/188 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M I S+  VV + N +YS F L   F++ AGL+LLL A+FVA   +++Y
Sbjct: 7   VQIVSFAILAAMMIGSAIGVVLLENVVYSAFLLGGVFISIAGLYLLLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117
           VGAV V  LF IM+++   E  +P  K            AA  +VCA  F     MV + 
Sbjct: 67  VGAVNVLILFAIMLVN-KREAFQPIAKSWIRR-------AATALVCAGIFALLSAMVLTT 118

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDI 176
              +S  V   +++  IG   +T +  P E++  +LL++++GAIVL  R    D    D 
Sbjct: 119 PWAISTAVPIESSIITIGLHFFTDFLLPFELASILLLMALVGAIVLARREFLPDEDEADT 178

Query: 177 SKQLESNP 184
           +  L   P
Sbjct: 179 ALTLPERP 186


>gi|152993798|ref|YP_001359519.1| NADH dehydrogenase subunit J [Sulfurovum sp. NBC37-1]
 gi|151425659|dbj|BAF73162.1| NADH-quinone oxidoreductase, chain J [Sulfurovum sp. NBC37-1]
          Length = 187

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 103/190 (54%), Gaps = 9/190 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLFS + I    + V  +N +Y++ SL    V  +G F +LGA+F+ ++ L+VYV
Sbjct: 3   ETIAFYLFSALTIGLFLITVMSKNVLYAMTSLAAGMVLISGFFFILGADFLGVVQLIVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA++  + F +M  D   ++ E       +  F +G L+A  +V      +++   +   
Sbjct: 63  GAIMALYSFAMMFFDATKDIKEKNTNPALI--FVLGGLSALALVLMFAAPIYNESIQALY 120

Query: 124 LVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            + +G  N +++G VL+T+Y  P E++  +LL++MI  I+L        K+ D S   ++
Sbjct: 121 PMHEGVGNAQDVGIVLFTKYLVPFEVAAVMLLVAMIAGIILAG------KKMDQSLTKDT 174

Query: 183 NPDNSIVMVK 192
           + D+ I+  K
Sbjct: 175 SVDDEILTQK 184


>gi|133900456|gb|ABO41394.1| NADH dehydrogenase subunit 6 [Galearia filiformis]
 gi|257852660|gb|ACV71342.1| NADH dehydrogenase subunit 6 [Panda oleosa]
          Length = 178

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRLVFKG--------N 129
           I        R    S  IG I   E+  I+   +  +   +   + L + G         
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTGYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|114177209|gb|ABI53762.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ10101]
          Length = 235

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 88/190 (46%), Gaps = 55/190 (28%)

Query: 31  SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
           SVF LI  F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+       E  +K+
Sbjct: 50  SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIP-----GEKERKK 104

Query: 91  G---------FLGSFFIGILAAELIVCASNFMV-------------------FSAEGELS 122
           G          +G    GILAAEL     + ++                     +E E  
Sbjct: 105 GEETGRIGTPAIGILIGGILAAELASAVPDSIIKNYELTNILSDRNRDKSGLIGSEKESI 164

Query: 123 RLVFK----------------------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
               K                      G N+E IGKVLY  Y Y   +  FILL++MIGA
Sbjct: 165 TTGIKNNIETGYPYDYFDYFLTLNGSGGTNMEAIGKVLYINYYYAFILVSFILLVAMIGA 224

Query: 161 IVLMLRHRRD 170
           IVL L+   +
Sbjct: 225 IVLGLQSSDE 234


>gi|301061344|ref|ZP_07202126.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
 gi|300444663|gb|EFK08646.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
          Length = 299

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 7/166 (4%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++S+ L V+ R  +++V  LI +F   A LF LLGA F+A + +++Y GAV+V FLFIIM
Sbjct: 137 VVSTGLAVSQRKLVHAVVFLIISFFATALLFYLLGAPFLAALEVIIYAGAVMVMFLFIIM 196

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSAEGELSRLVFKGNNVEN 133
            L ++ E  EP      L  +F  IL     L++  +   +    G L +L         
Sbjct: 197 TLKLEKE--EPESGTS-LRPWFPAILLGGISLVLLVTLLWMGQDHGALLKLAMAAPR--E 251

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           +GK L+ ++ + +E+  F+L +++ GA+ L   H++  K  D  ++
Sbjct: 252 VGKYLFREFWFSVEVVSFLLFVALAGALYLAKEHKKPTKTADSQQE 297


>gi|257852700|gb|ACV71362.1| NADH dehydrogenase subunit 6 [Viola pubescens]
          Length = 178

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI     F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900412|gb|ABO41372.1| NADH dehydrogenase subunit 6 [Casearia sylvestris]
          Length = 179

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 88/177 (49%), Gaps = 21/177 (11%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   ALMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVF- 126
           I I        R    S  IG     LI     F +F  E             L   V+ 
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIG-----LIFWWEMFFIFDNESIPLLPTQRKTTSLRYTVYA 115

Query: 127 ----KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                  N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 116 VKVRNWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900572|gb|ABO41452.1| NADH dehydrogenase subunit 6 [Dillenia philippinensis]
          Length = 179

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 88/175 (50%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFFIPVFCDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI+    F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|15606522|ref|NP_213902.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5]
 gi|2983740|gb|AAC07301.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5]
          Length = 162

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 94/171 (54%), Gaps = 14/171 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L F++     IIS+   V  +NPI+ +   + + +  AGLFL LGAE +A + L++Y
Sbjct: 1   MEWLIFFILGAWLIISALGTVLAKNPIHVMLFFLSSLLAMAGLFLSLGAELLAGLQLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV----CASNFMVFSAE 118
             A++VF++  I  +  +       K + F G +   IL A  I+       ++MV   +
Sbjct: 61  AVAIVVFYVLAITTIPWE-------KIKRFEGVYKTEILTASPILLVLFLVMSYMVIKGK 113

Query: 119 -GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             E S +V   +NVE +G+ L+T Y +P E++  ILL++M+GAI+L  +  
Sbjct: 114 FAEPSGVV--KDNVEAVGRTLFTSYLFPFEVASVILLVAMVGAILLARKEE 162


>gi|193215449|ref|YP_001996648.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088926|gb|ACF14201.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chloroherpeton thalassium ATCC 35110]
          Length = 176

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 9/147 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           +NP+ S   L+  F    GL+L L A+F+A++ ++VY GA++V FLF IM+L ++ E + 
Sbjct: 26  KNPVSSALFLVLNFFALGGLYLSLEAQFIAVVQVIVYAGAIMVLFLFTIMLLSLEDESSL 85

Query: 86  PRK---KRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSRLV-FKGNNVENIGKVLYT 140
             +   K+GF  +F I G+   E++         +    +SRL   +  +V+ IGK L T
Sbjct: 86  IERFDLKKGF--AFLISGVFLVEILYIVG--FKLTPVKPVSRLTPVQIGDVKTIGKALLT 141

Query: 141 QYAYPLEISGFILLLSMIGAIVLMLRH 167
           +Y +P EI   +LLL++IGA++L  R 
Sbjct: 142 EYVFPFEIISIVLLLAIIGAVLLAKRK 168


>gi|257852624|gb|ACV71324.1| NADH dehydrogenase subunit 6 [Suregada glomerulata]
          Length = 178

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|9280596|gb|AAF86486.1|AF279439_1 NADH dehydrogenase subunit 6 [Lupinus luteus]
 gi|9280600|gb|AAF86488.1|AF279441_1 NADH dehydrogenase subunit 6 [Lupinus mutabilis]
          Length = 205

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 11/176 (6%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG 128
           MM  I I        R    S  IG IL  E+     N  +     + + + L   V+ G
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAG 129

Query: 129 -----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                 N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 130 KVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDVFRR 185


>gi|257852730|gb|ACV71377.1| NADH dehydrogenase subunit 6 [Krameria lanceolata]
          Length = 178

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTXVKRQDVFRR 172


>gi|257852704|gb|ACV71364.1| NADH dehydrogenase subunit 6 [Cephalotus follicularis]
 gi|257852706|gb|ACV71365.1| NADH dehydrogenase subunit 6 [Rourea minor]
 gi|257852710|gb|ACV71367.1| NADH dehydrogenase subunit 6 [Crinodendron hookerianum]
 gi|257852712|gb|ACV71368.1| NADH dehydrogenase subunit 6 [Sloanea berteroana]
 gi|257853521|gb|ACV71763.1| NADH dehydrogenase subunit 6 [Averrhoa carambola]
          Length = 178

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|133900490|gb|ABO41411.1| NADH dehydrogenase subunit 6 [Lunania parviflora]
          Length = 179

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 88/177 (49%), Gaps = 21/177 (11%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   ALMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-----------GELSRLVFK 127
           I I        R    S  IG     LI     F +   E             L   V+ 
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTASLRYTVYA 115

Query: 128 G-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           G      N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 116 GKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852748|gb|ACV71386.1| NADH dehydrogenase subunit 6 [Daphniphyllum macropodum]
          Length = 178

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRLVFK--------GN 129
           I        R    S  IG IL  E+     N  +     +   + L +K          
Sbjct: 63  IAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYKVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|257852646|gb|ACV71335.1| NADH dehydrogenase subunit 6 [Lozania pittieri]
          Length = 178

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|229082509|ref|ZP_04214972.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock4-2]
 gi|228700941|gb|EEL53464.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock4-2]
          Length = 162

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 89/161 (55%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAIVL    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLA---KKDEKEED 159


>gi|229087782|ref|ZP_04219904.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-44]
 gi|228695541|gb|EEL48404.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-44]
          Length = 164

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 6/165 (3%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S  AII   L++ +   ++ + +L+F F++ AGL+ LL AEFV +  +++Y GA+ +  +
Sbjct: 2   SLTAIIGGILMLNLTKVMHMMLALVFTFLSIAGLYFLLSAEFVGVAQILIYSGAITIIMI 61

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRLVFKGNN 130
           F IM+   D E       R  L   F+ ++A   ++  A N + F+ +     L     N
Sbjct: 62  FGIMLTKHDAESESSFSFRKLL--IFLAVVAFGGVMYFAVNNIDFTNQNVQGSLPLHEQN 119

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              IG +LY++Y  P E++  ILL++++GAIVL    ++D +  D
Sbjct: 120 TLQIGTLLYSKYVIPFELTSVILLVALVGAIVLA---KKDEEEGD 161


>gi|4261644|gb|AAD13944.1|S64009_1 NADH dehydrogenase subunit 6 [Marchantia polymorpha]
          Length = 109

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 56/83 (67%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+F  +A++S  +V+  +NP++SV  LI  F N +GL +LLG +F AMI LVVYVGA+ 
Sbjct: 4  FYVFVVLALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGAIA 63

Query: 68 VFFLFIIMMLDIDIEVAEPRKKR 90
          V FLF++MML I IE       R
Sbjct: 64 VLFLFVVMMLHIRIEEIHENVLR 86


>gi|133900552|gb|ABO41442.1| NADH dehydrogenase subunit 6 [Sauvagesia erecta]
          Length = 179

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV  LI  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFLILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV+      G +G  F            I +L  +    +  +MV++ +     
Sbjct: 63  IAEIHEEVSRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTNSLRYMVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|323649908|ref|YP_004237281.1| NADH dehydrogenase subunit 6 [Ricinus communis]
 gi|322394288|gb|ADW96045.1| NADH dehydrogenase subunit 6 [Ricinus communis]
          Length = 217

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 96/185 (51%), Gaps = 27/185 (14%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++
Sbjct: 10  ALVSGLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVV 69

Query: 75  MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117
           MM  I I     EV       G +G  F            I +L  +    +  + V++ 
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQ 174
           +      V    N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQ
Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQ 182

Query: 175 DISKQ 179
           D+ ++
Sbjct: 183 DLFRR 187


>gi|254032046|ref|YP_001023796.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ10101]
          Length = 211

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 88/190 (46%), Gaps = 55/190 (28%)

Query: 31  SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
           SVF LI  F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+       E  +K+
Sbjct: 26  SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIP-----GEKERKK 80

Query: 91  G---------FLGSFFIGILAAELIVCASNFMV-------------------FSAEGELS 122
           G          +G    GILAAEL     + ++                     +E E  
Sbjct: 81  GEETGRIGTPAIGILIGGILAAELASAVPDSIIKNYELTNILSDRNRDKSGLIGSEKESI 140

Query: 123 RLVFK----------------------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
               K                      G N+E IGKVLY  Y Y   +  FILL++MIGA
Sbjct: 141 TTGIKNNIETGYPYDYFDYFLTLNGSGGTNMEAIGKVLYINYYYAFILVSFILLVAMIGA 200

Query: 161 IVLMLRHRRD 170
           IVL L+   +
Sbjct: 201 IVLGLQSSDE 210


>gi|226227059|ref|YP_002761165.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27]
 gi|226090250|dbj|BAH38695.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27]
          Length = 168

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 5/157 (3%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +AI S+ L VT +NP+ +   L+      AGL+++L A FV  I ++VY GA++V F+
Sbjct: 13  SLLAIASALLFVTRKNPVPAALWLVNVMFALAGLYVMLDAPFVGTIQVLVYAGAIMVTFV 72

Query: 72  FIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           F++M+L++   EV++ R     LGS  +G+     ++ A    +   E   +R     N 
Sbjct: 73  FVVMLLNLGKTEVSDIRSLGTRLGSGVVGLALLANLLLALRQHIEVPEFSAAR----DNV 128

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           VE +   L+T Y    E++  +LL+++IGA+VL  R 
Sbjct: 129 VEPVAAALFTDYLVAFELTSLVLLVAVIGAVVLAKRR 165


>gi|94985025|ref|YP_604389.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Deinococcus
           geothermalis DSM 11300]
 gi|94555306|gb|ABF45220.1| NADH dehydrogenase subunit J [Deinococcus geothermalis DSM 11300]
          Length = 197

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 27/205 (13%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F     +A++ + + V  RN +++   L+   ++ AGLF  L A F+A   ++VY GA++
Sbjct: 4   FIFLGALALVGAVITVAARNAVHAALGLVGTLLSVAGLFASLNAAFLAATQVIVYAGAIM 63

Query: 68  VFFLFIIMMLDIDIEVA--EP----RKKRGFLGSFFIGILAAELIVCASNFMVFS----- 116
           V FLF+IM+L+ +  ++  +P    R+  G  G    G  A          + F+     
Sbjct: 64  VLFLFVIMLLNANQPISGRDPVPFVRELAGIGGVLLAGAFA---------VLAFTYRDPR 114

Query: 117 --AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIK 172
             AEG  +    +G N   +G+VL T++  P E    +LL++++GAI L+ R   + D  
Sbjct: 115 PLAEGAAA---LQGGNAAPVGEVLLTRFLLPFEAVSILLLVAIVGAIALVQRPAAQPDGV 171

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
                  L ++PD     +  + G+
Sbjct: 172 TDAEGAALPTSPDRQPETLVPERGR 196


>gi|229072761|ref|ZP_04205961.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus F65185]
 gi|229193545|ref|ZP_04320490.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC
           10876]
 gi|228589934|gb|EEK47808.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC
           10876]
 gi|228710387|gb|EEL62361.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus F65185]
          Length = 162

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 89/161 (55%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAIVL    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLA---KKDEKEED 159


>gi|133900496|gb|ABO41414.1| NADH dehydrogenase subunit 6 [Maprounea guianensis]
          Length = 179

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFXDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI+    F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTGVKRQDIFRR 172


>gi|133900442|gb|ABO41387.1| NADH dehydrogenase subunit 6 [Endospermum moluccanum]
          Length = 179

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVF-----SAEGELSRLVFKG-----N 129
           I        R    S  IG IL  E+     N  +           L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTASLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|220919432|ref|YP_002494736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957286|gb|ACL67670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 168

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 90/153 (58%), Gaps = 6/153 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++F+   + ++  V+  R+P+Y+  +L+ AF   AG+++LL A  +A + ++VY 
Sbjct: 6   EQVTFWVFAIPLVATAIGVIMSRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILVYA 65

Query: 64  GAVIVFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV+V FLF+IM+L +  E  + EPR+    +G+  + +L A L    +     +   EL
Sbjct: 66  GAVMVLFLFVIMLLSLGDEHLIKEPRRAMQLIGALGVVLLVAVLASAIAQ----ARTSEL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           + L      V+ +G+VLYTQ+  P E++  +LL
Sbjct: 122 ATLTADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154


>gi|196249744|ref|ZP_03148440.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. G11MC16]
 gi|196210620|gb|EDY05383.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. G11MC16]
          Length = 173

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 10/168 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+L +  AI     ++ + N ++ V +L+  F+  AGL++LL AEFVA++ +++Y GA+ 
Sbjct: 8   FFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVLIYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFF--IGILAAELIVC-ASNFMVFSAEGELSRL 124
           +  LF IM+     +  E +   G        I +LA  L V      + F A+G     
Sbjct: 68  IIMLFAIMLTRHHADDKERQTTGGVWHRAVAAISVLAFGLAVYFGIRRLDFGADGS---- 123

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               +N   IGK LY+ Y  P EI   ILL+++IGAIVL    ++D K
Sbjct: 124 ALATDNAREIGKWLYSYYTIPFEIVSVILLVALIGAIVLA---KKDGK 168


>gi|56791562|gb|AAW30319.1| NADH dehydrogenase subunit 6 [Liriodendron tulipifera]
          Length = 177

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
            S  A++S  +V   +NP++ V   I  F + +GL LLLG +F AMI+ VV++GA+   F
Sbjct: 1   LSSPALVSGLMVARAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAASF 60

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSRL 124
           LF++MM +I I        R    S  IG IL  E+     N              L   
Sbjct: 61  LFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFVLDNETIPLLPTHRNTTSLRYT 120

Query: 125 VFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           V  G      N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+
Sbjct: 121 VHAGKVRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDV 177


>gi|9280598|gb|AAF86487.1|AF279440_1 NADH dehydrogenase subunit 6 [Lupinus angustifolius]
          Length = 205

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 11/176 (6%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVAHAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG 128
           MM  I I        R    S  IG IL  E+     N  +     + + + L   V+ G
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAG 129

Query: 129 -----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                 N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 130 KVRSWTNLETLGNLLYTYYFVWFLVGSLILLVAMIGAIVLTMHRTTQVKRQDVFRR 185


>gi|193212952|ref|YP_001998905.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobaculum
           parvum NCIB 8327]
 gi|193086429|gb|ACF11705.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobaculum
           parvum NCIB 8327]
          Length = 173

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 5/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+ + ++S+  VV  +N IYS FSL+F F   A L++ L A+F+A+  +VVYVG ++
Sbjct: 10  FYIFAAVTVVSAAFVVFSKNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVGGIL 69

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-F 126
           V  LF +M  +  +      + +  + +   G++   L++    F  ++  G +  LV  
Sbjct: 70  VLLLFGVMFTNTIMS----TELKADVMNMVPGVILLFLMIAGMLFTFYTGGGWMPGLVQL 125

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +G+ VE+IG    ++Y  P E+   +LL++++GA  L    +   K Q
Sbjct: 126 QGSVVESIGMETMSRYMLPFEMVSIVLLVALLGAAYLARYDKAQNKEQ 173


>gi|197124711|ref|YP_002136662.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. K]
 gi|196174560|gb|ACG75533.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. K]
          Length = 168

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 90/153 (58%), Gaps = 6/153 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++F+   + ++  V+  R+P+Y+  +L+ AF   AG+++LL A  +A + ++VY 
Sbjct: 6   EQVTFWVFAIPLVATAIGVIISRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILVYA 65

Query: 64  GAVIVFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV+V FLF+IM+L +  E  + EPR+    +G+  + +L A L    +     +   EL
Sbjct: 66  GAVMVLFLFVIMLLSLGDEHLIKEPRRAMQLIGALGVVLLVAVLASAIAQ----ARTSEL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           + L      V+ +G+VLYTQ+  P E++  +LL
Sbjct: 122 ATLTADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154


>gi|323149050|ref|YP_004222818.1| NADH dehydrogenase subunit 6 [Vigna radiata]
 gi|308206756|gb|ADO19893.1| NADH dehydrogenase subunit 6 [Vigna radiata]
          Length = 205

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRLVF----- 126
           MM  I I        R    S  IG IL  E+     N  +     +   + L++     
Sbjct: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQINTTSLIYTVYAG 129

Query: 127 ---KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                 N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 130 KVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 185


>gi|229328270|ref|YP_002860283.1| NADH dehydrogenase subunit 6 [Megaceros aenigmaticus]
 gi|186695239|gb|ACC86806.1| NADH dehydrogenase subunit 6 [Nothoceros aenigmaticus]
          Length = 201

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 23/204 (11%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + S +A++S       +NP++SV   I  F N +GL +LLG +  AMI LVVYVGA
Sbjct: 2   ILFSVPSSIALVSGVTATRAKNPVHSVLFSIPVFRNTSGLLVLLGLDPFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSF----------------FIGILAAELIVC 108
           + V    +    +I I E+ E   +   +G                  +I IL  +L   
Sbjct: 62  IAVSPSSVATTSNIKIAEIHENVLRYLPVGGITGLILLLEIFFIVDNDYIPILPTKLSTT 121

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              + V++ +      +    N+E +G +LYT Y      S FI L++MIGA VL +   
Sbjct: 122 YLTYTVYAGK------IQSWTNLETLGNLLYTTYFTSFLFSSFISLVAMIGATVLTMHRT 175

Query: 169 RDIKRQDISKQLESNPDNSIVMVK 192
             +KRQD+ +Q   +  N+I  ++
Sbjct: 176 TRVKRQDVFRQNARDFRNTIKKIR 199


>gi|86160614|ref|YP_467399.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777125|gb|ABC83962.1| NADH dehydrogenase subunit J [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 168

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 90/153 (58%), Gaps = 6/153 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++F+   + ++  V+  R+P+Y+  +L+ AF   AG+++LL A  +A + ++VY 
Sbjct: 6   EQVTFWVFAIPLVATAIGVIMSRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILVYA 65

Query: 64  GAVIVFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV+V FLF+IM+L +  E  + EPR+    +G+  + +L A L    +     +   EL
Sbjct: 66  GAVMVLFLFVIMLLSLGDEHLIKEPRRAMQLIGALGVVLLVAVLASAIAQ----ARTSEL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           + L      V+ +G+VLYTQ+  P E++  +LL
Sbjct: 122 ATLAADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154


>gi|257852746|gb|ACV71385.1| NADH dehydrogenase subunit 6 [Soyauxia floribunda]
          Length = 178

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVFRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|56791574|gb|AAW30325.1| NADH dehydrogenase subunit 6 [Platanus occidentalis]
          Length = 177

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 89/177 (50%), Gaps = 21/177 (11%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+ V FLF++
Sbjct: 6   ALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVV 65

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-----------GELSR 123
           MM  I I        R    S  IG     LI+    F +F  E             L  
Sbjct: 66  MMFHIQIAETHEEVLRYLPVSGIIG-----LILWWEMFFIFFNETIPLLPTQRNTTSLRY 120

Query: 124 LVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            V  G      N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD
Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYGVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQD 177


>gi|257852608|gb|ACV71316.1| NADH dehydrogenase subunit 6 [Hevea sp. Gillespie 4272]
 gi|257852610|gb|ACV71317.1| NADH dehydrogenase subunit 6 [Hura crepitans]
 gi|257852614|gb|ACV71319.1| NADH dehydrogenase subunit 6 [Manihot grahamii]
          Length = 178

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900424|gb|ABO41378.1| NADH dehydrogenase subunit 6 [Croton alabamensis var. alabamensis]
          Length = 179

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+  I+      +   +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDEETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRR 172


>gi|228903768|ref|ZP_04067885.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           IBL 4222]
 gi|228968416|ref|ZP_04129409.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791275|gb|EEM38884.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228855857|gb|EEN00400.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           IBL 4222]
          Length = 162

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159


>gi|133900416|gb|ABO41374.1| NADH dehydrogenase subunit 6 [Cespedesia spathulata]
          Length = 179

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV  LI  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFLILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  +MV++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|296124099|ref|YP_003631877.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces
           limnophilus DSM 3776]
 gi|296016439|gb|ADG69678.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces
           limnophilus DSM 3776]
          Length = 239

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 96/182 (52%), Gaps = 17/182 (9%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           +++ L FY+ +  A++   L+ T RNP+Y+      A +   GLF++  A F+A +T++V
Sbjct: 58  LVRDLLFYMAAGTAVLGGLLMTTQRNPVYAALWFAVATLGVCGLFVINSAPFLAAVTIIV 117

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPR-KKRGF----LGSFFIGILAAELIVCASNFMVFS 116
           Y GA++V F+F+IM+   +      R  ++ F    LG   +G +   L+     F   S
Sbjct: 118 YAGAIVVTFVFVIMLAQQEQGSGYDRIPQQPFLATVLGCLLVGTM---LLGIEKTFGPES 174

Query: 117 AEGELSRLVFKGNN--VEN-------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +   + R     ++  VEN       +G+ L+T Y + +E++G +LL++ IGAI +  R 
Sbjct: 175 SRLSVDRTALHVSSLPVENDLGSPGGVGRSLFTDYLFAVELAGTVLLVATIGAIAIAPRR 234

Query: 168 RR 169
            +
Sbjct: 235 PQ 236


>gi|133900380|gb|ABO41356.1| NADH dehydrogenase subunit 6 [Acridocarpus natalitius]
          Length = 179

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 23/178 (12%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   ALMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGEL 121
           I I     EV       G +G  F            I +L  +    +  + V++ +   
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK--- 117

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
              V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 ---VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900396|gb|ABO41364.1| NADH dehydrogenase subunit 6 [Bischofia javanica]
          Length = 179

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|88809900|ref|ZP_01125406.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7805]
 gi|88786284|gb|EAR17445.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7805]
          Length = 199

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 28/183 (15%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S + ++ +  VV + N +YS F L   F+  AGL+LLL A FVA   ++VYV
Sbjct: 8   QLISFLVLSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI---VCASNFMVFS---- 116
           GAV V  LF IM+++          KR  L     GI    L+   VCA  F++ +    
Sbjct: 68  GAVNVLILFAIMLVN----------KREDLAP-IPGIAVRRLLSGGVCAGLFVLLTRVVL 116

Query: 117 ----AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               AEG     + +G  +  IG+ L+T Y  P E++  +LL++MIGAIVL    RRD++
Sbjct: 117 TTPWAEG--PEPIGEGATIR-IGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVQ 170

Query: 173 RQD 175
             D
Sbjct: 171 AVD 173


>gi|65329286|gb|AAY42125.1| Nqo10 [Rhodothermus marinus]
          Length = 170

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L F+L +  AI ++  ++  RNP+ S   L+      AGL+L L A F+ +I +++Y G
Sbjct: 4   QLLFFLLAVTAIAAALGMLIARNPVSSALWLVLNLFCIAGLYLTLQASFLGVIQVLIYAG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIG--ILAAELIVCASNFMVFSAEGEL 121
           A++V FLF+IM+L+++  +  PR+   G + +F +   +LA  + V A    V       
Sbjct: 64  AIMVLFLFVIMLLNLE-ALPHPRQIDWGKVLAFVVTMIVLAQLVYVVALGLDVLPTFVAT 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +       + + +G+ L T+Y  PL++ G +LL + IGA+  ML  RR
Sbjct: 123 TEQAAVTGSAQALGRELLTRYIMPLQVIGILLLAATIGAV--MLAKRR 168


>gi|229112706|ref|ZP_04242242.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock1-15]
 gi|228670838|gb|EEL26146.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock1-15]
          Length = 162

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159


>gi|330339541|ref|YP_004376741.1| NADH dehydrogenase subunit 6 [Corallium konojoi]
 gi|328750582|dbj|BAK18843.1| NADH dehydrogenase subunit 6 [Corallium konojoi]
          Length = 184

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 17/188 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLF  + S   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1   MNSLFI-MISLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ + FLF+IM+      + +P K      S F+ +    +I    + +  S +   +
Sbjct: 60  VGAIAILFLFVIML------IQQPNKVDYQDHSHFLPV-GLSVIFLFYSLLTNSPKYISN 112

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR---------HRRDIKR 173
            ++    N+  IG  LYT Y   + ++  +LL++M+GAI+L  +         H     R
Sbjct: 113 PVIGSRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILLAKQPSTPSLYDSHVETRSR 172

Query: 174 QDISKQLE 181
           QD+  Q+ 
Sbjct: 173 QDLFLQIS 180


>gi|123965422|ref|YP_001010503.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9515]
 gi|123199788|gb|ABM71396.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9515]
          Length = 199

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 20/185 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S + I+ +  V+ + + +YS F L   F++ AGL+LLL A FVA   ++VYV
Sbjct: 8   QIICFSVLSLVVIVGALGVILLDSIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEP----RKKRGFLGSFFIGILAAELIVCASNFMVF---- 115
           GAV V  +F IM+++   E  +P      +R    S  + +L+  + V  SN        
Sbjct: 68  GAVNVLIIFAIMLVN-KKEDLKPINNINSRRIISTSICLTLLSLLIRVDLSNVWSLADPN 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           S+ GE S +         IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +D
Sbjct: 127 SSIGEESTI--------RIGEHLFSDYLLPFEVASVLLLMAMIGAIVL---ARRDVFNKD 175

Query: 176 ISKQL 180
           IS  L
Sbjct: 176 ISTGL 180


>gi|133900524|gb|ABO41428.1| NADH dehydrogenase subunit 6 [Petalostigma pubescens]
          Length = 179

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRR 172


>gi|257852708|gb|ACV71366.1| NADH dehydrogenase subunit 6 [Eucryphia milliganii]
          Length = 178

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F   +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPIPVFRETSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|124024944|ref|YP_001014060.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL1A]
 gi|123960012|gb|ABM74795.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. NATL1A]
          Length = 200

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 94/186 (50%), Gaps = 23/186 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + S + +  S  VV + N +YS F L   F+  AGL+LLL A FVA   ++VYVGAV 
Sbjct: 12  FLILSAIIVSGSLAVVLLENIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQILVYVGAVN 71

Query: 68  VFFLFIIMMLDIDIEVAEP----RKKR----GFLGSFFIGILAAELIVCASNFMVFSAEG 119
           V  LF IM+++ + E  +P    R ++    G  G   I +L    I    N    ++ G
Sbjct: 72  VLILFAIMLVN-NKEKLKPIKGLRTRKLISGGVCGGLLILLLRVS-ITTKWNLPGPTSIG 129

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDIS 177
           E           E IG+ L+T Y  P E++  +LL++MIGAIVL    RRD  I   DI+
Sbjct: 130 E--------EATEIIGEHLFTDYLLPFELASILLLMAMIGAIVL---ARRDVSISTADIN 178

Query: 178 KQLESN 183
                N
Sbjct: 179 DLKNQN 184


>gi|152977481|ref|YP_001376998.1| NADH dehydrogenase subunit J [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152026233|gb|ABS24003.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           cytotoxicus NVH 391-98]
          Length = 174

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ SF A++    ++ V   ++ + +L+F F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSFTAVMGGVFMLNVTKVMHMMLALVFTFLSIAGLYFLLAAEFIGVAQILIYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   D E  E R     +  F   +L   ++  A + + F+ +     L   
Sbjct: 68  IIMIFGIMLTRHDAE-NESRISLRKIIVFLAVMLFGTVMYFAVHNIDFANQNTQDILPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             N   IG +LY++Y  P E++  ILL++++GAIVL    ++D ++ D
Sbjct: 127 EQNTLQIGTLLYSKYVIPFELASVILLVALVGAIVLA---KKDEEKGD 171


>gi|87123594|ref|ZP_01079445.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Synechococcus sp. RS9917]
 gi|86169314|gb|EAQ70570.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Synechococcus sp. RS9917]
          Length = 200

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 19/182 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F   + + +I +  VV + N +YS F L   F+  AGL+LLL A FVA   ++VYV
Sbjct: 8   QLICFVALAAVVVIGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAE----PRKK---RGFLGSFFIGILAAELIVCASNFMVFS 116
           GAV V  LF IM+++   ++A     P ++    G     F  +L   +I         +
Sbjct: 68  GAVNVLILFAIMLVNKREDLAPIQGLPIRRLLSAGVCAGLF-ALLVRVVITTPWAVPGPA 126

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           A GE           E IG+ L+T Y  P E++  +LL++MIGAIVL    RRD++  D+
Sbjct: 127 AIGE--------GATERIGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVQSTDL 175

Query: 177 SK 178
             
Sbjct: 176 GT 177


>gi|133900570|gb|ABO41451.1| NADH dehydrogenase subunit 6 [Vismia sp. Miller et al. 9313]
          Length = 179

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI LVV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFLVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|228942440|ref|ZP_04104978.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228955540|ref|ZP_04117544.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228961557|ref|ZP_04123167.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228975373|ref|ZP_04135929.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982009|ref|ZP_04142303.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           Bt407]
 gi|229050965|ref|ZP_04194515.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH676]
 gi|229130545|ref|ZP_04259501.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-Cer4]
 gi|229147834|ref|ZP_04276176.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST24]
 gi|229153458|ref|ZP_04281636.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1550]
 gi|228630062|gb|EEK86713.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1550]
 gi|228635662|gb|EEK92150.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST24]
 gi|228652884|gb|EEL08766.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228722423|gb|EEL73818.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH676]
 gi|228777770|gb|EEM26043.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           Bt407]
 gi|228784355|gb|EEM32378.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228798175|gb|EEM45178.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804162|gb|EEM50777.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228817281|gb|EEM63368.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 162

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159


>gi|229181542|ref|ZP_04308868.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           172560W]
 gi|228601910|gb|EEK59405.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           172560W]
          Length = 162

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159


>gi|257852602|gb|ACV71313.1| NADH dehydrogenase subunit 6 [Conceveiba martiana]
          Length = 178

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172


>gi|133900382|gb|ABO41357.1| NADH dehydrogenase subunit 6 [Androstachys johnsonii]
 gi|133900434|gb|ABO41383.1| NADH dehydrogenase subunit 6 [Dissiliaria muelleri]
 gi|133900506|gb|ABO41419.1| NADH dehydrogenase subunit 6 [Micrantheum hexandrum]
          Length = 179

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|58578649|ref|YP_203369.1| NADH dehydrogenase subunit 6 [Mortierella verticillata]
 gi|57545582|gb|AAW51706.1| NADH dehydrogenase subunit 6 [Mortierella verticillata]
          Length = 200

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 33/199 (16%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++   L +F +++S+ LV+T R+P+ SV  LI  F+N AG  +LLG  F+A+  ++VY
Sbjct: 1   MNNILLDLLTFTSVLSAILVITARSPVISVLFLIAVFINIAGYLILLGVNFIALSYIMVY 60

Query: 63  VGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLG-------SFFI------------- 98
           +GA+ + FLF+IMML++ +    E+     K   L        S+ I             
Sbjct: 61  IGAIAILFLFVIMMLNVRLTELHEIGSDYSKNFPLAIVVAASLSYIILSNSLTKSIDQIY 120

Query: 99  ---------GILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
                      L + +     N++        + +      ++ IG ++Y+ Y   L + 
Sbjct: 121 LITALFDKLNFLNSGINTTTDNYINIGYNTIYNNIFVNYEQIQAIGNIMYSSYGLYLILC 180

Query: 150 GFILLLSMIGAIVLMLRHR 168
            F+LLL+M+G I++ L  +
Sbjct: 181 SFVLLLAMLGPIIITLDKK 199


>gi|257852612|gb|ACV71318.1| NADH dehydrogenase subunit 6 [Lasiocroton bahamensis]
 gi|257852622|gb|ACV71323.1| NADH dehydrogenase subunit 6 [Spathiostemon javensis]
          Length = 178

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172


>gi|116073962|ref|ZP_01471224.1| NADH dehydrogenase subunit J [Synechococcus sp. RS9916]
 gi|116069267|gb|EAU75019.1| NADH dehydrogenase subunit J [Synechococcus sp. RS9916]
          Length = 200

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 11/178 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + + +  I +  VV + N +YS F L   F+  AGL+LLL A FVA   ++VYV
Sbjct: 8   QLICFLVLASVVAIGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPR---KKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           GAV V  LF IM+++   ++A  +    +R   G    G+ A  L+V  +    ++  G 
Sbjct: 68  GAVNVLILFAIMLVNKREDLAPIKGLQTRRLISGGVCAGLFA--LLVRVALTTPWAVPGP 125

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +      +    IG+ L+T Y  P E++  +LL++MIGAIVL    RRD++  D+  
Sbjct: 126 AA---VGEDATVRIGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVQATDLGT 177


>gi|257852674|gb|ACV71349.1| NADH dehydrogenase subunit 6 [Tetracoccus dioicus]
          Length = 178

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852662|gb|ACV71343.1| NADH dehydrogenase subunit 6 [Paropsia madagascariensis]
          Length = 178

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKGN----- 129
           I        R    S  IG IL  E+  I+   +  +   + + + L   V+ G+     
Sbjct: 63  IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGSVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRR 172


>gi|332830197|gb|EGK02825.1| hypothetical protein HMPREF9455_01075 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 167

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 13/173 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M S+ FY+ + + I +  L V  +NPI+S   +I  F + +G FLLL A F+A++ +VVY
Sbjct: 1   MISVIFYILAAITIGTGILTVISKNPIHSAVYMIICFFSISGHFLLLNALFLAVVNIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK-----RGFLGSFFIGI-LAAELIVCASNFMVFS 116
            GA++V  LF +M++++  E  EP+KK        + S  +GI L A LI  A     + 
Sbjct: 61  AGAIMVLLLFTLMLMNLS-EQHEPKKKVISRVAATVSSCLMGIVLLAALIKSAPVVETYK 119

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           AEG    L ++  N+  IG+VL  +Y  P E +  +L+ +MIGA+++  + ++
Sbjct: 120 AEG----LDYQSVNI--IGQVLLDEYLVPFEFASILLITAMIGAVLISKKEKK 166


>gi|291285966|ref|YP_003502782.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883126|gb|ADD66826.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 170

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 96/171 (56%), Gaps = 17/171 (9%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           ++ ++ F++    A++S+  ++T  NP++S   ++  F + AG+F+ L AEF+A I ++V
Sbjct: 4   ILANIGFWVLGITAVVSALFLITRENPVHSALWMLLTFFSVAGIFVQLDAEFIAAIQVMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF---IGILAAELIVCASNFMVFSAE 118
           Y GA++V ++F++M+L+         K  GF+   F   +G + A ++       +  A+
Sbjct: 64  YAGAILVLYMFVVMLLN--------PKSNGFIKMPFKVVLGGIVAFIVFLQIVMTLMGAD 115

Query: 119 ----GELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                +L+ +    N  NV+  G  L+T Y  P EI   +LL++MIGAIV+
Sbjct: 116 IIKTAKLTGIADPHNFGNVKMFGIDLFTTYLVPFEIVSIMLLVAMIGAIVI 166


>gi|133900440|gb|ABO41386.1| NADH dehydrogenase subunit 6 [Elatine triandra]
          Length = 179

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|192293782|ref|YP_001994421.1| NADH dehydrogenase subunit 6 [Acanella eburnea]
 gi|148964837|gb|ABR19859.1| NADH dehydrogenase subunit 6 [Acanella eburnea]
          Length = 183

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 94/161 (58%), Gaps = 8/161 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1   MNSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ + FLF+IM++       +P K      S F+ +    +I    + +  S +   +
Sbjct: 60  VGAIAILFLFVIMLIQ------QPNKVDSQDHSHFLPV-GLSVIFLFYSLLTNSPKYISN 112

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            ++    N+  IG  LYT Y   + ++  +LL +M+GAI+L
Sbjct: 113 PVIGSRTNIXAIGSHLYTTYYELVLVASLVLLXAMVGAILL 153


>gi|257852728|gb|ACV71376.1| NADH dehydrogenase subunit 6 [Guaiacum sanctum]
          Length = 178

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|257852580|gb|ACV71302.1| NADH dehydrogenase subunit 6 [Bhesa robusta]
          Length = 178

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI+    F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++M+GAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMMGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900518|gb|ABO41425.1| NADH dehydrogenase subunit 6 [Parnassia grandifolia]
          Length = 179

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            + +L  +    +  +MV++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETLPLLPTQRNTTSLRYMVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDVFRR 172


>gi|268316804|ref|YP_003290523.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodothermus
           marinus DSM 4252]
 gi|262334338|gb|ACY48135.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodothermus
           marinus DSM 4252]
          Length = 170

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 96/171 (56%), Gaps = 12/171 (7%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L F+L +  AI ++  ++  RNP+ S   L+      AGL+L L A F+ +I +++Y G
Sbjct: 4   QLLFFLLAVTAIAAALGMLIARNPVSSALWLVLNLFCIAGLYLTLQASFLGVIQVLIYAG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIG--ILAAELIVCASNFMV---FSAE 118
           A++V FLF+IM+L+++  +  PR+   G + +F +   +LA  + V A    V   F A 
Sbjct: 64  AIMVLFLFVIMLLNLE-ALPHPRQIDWGKVLAFVVTMIVLAQLVYVVALGLDVLPTFVAT 122

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            E + +     + + +G+ L T+Y  PL++ G +LL + IGA+  ML  RR
Sbjct: 123 PEQAAVT---GSAQALGRELLTRYIMPLQVIGILLLAATIGAV--MLAKRR 168


>gi|133900444|gb|ABO41388.1| NADH dehydrogenase subunit 6 [Erythrococca sp. Cheek s.n.]
          Length = 179

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172


>gi|133900520|gb|ABO41426.1| NADH dehydrogenase subunit 6 [Passiflora coccinea]
          Length = 179

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKGN----- 129
           I        R    S  IG IL  E+  I+   +  +   + + + L   V+ G+     
Sbjct: 63  IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGSVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRR 172


>gi|133900466|gb|ABO41399.1| NADH dehydrogenase subunit 6 [Homalanthus populneus]
          Length = 179

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900426|gb|ABO41379.1| NADH dehydrogenase subunit 6 [Ctenolophon englerianus]
          Length = 179

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852694|gb|ACV71359.1| NADH dehydrogenase subunit 6 [Tricliceras longipedunculatum]
          Length = 178

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+  I+   +  +   + + + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLGYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRR 172


>gi|133900392|gb|ABO41362.1| NADH dehydrogenase subunit 6 [Bergia texana]
          Length = 179

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900508|gb|ABO41420.1| NADH dehydrogenase subunit 6 [Microdesmis puberula]
          Length = 179

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTSQVKRQDVFRR 172


>gi|224020958|ref|YP_002608191.1| NADH dehydrogenase subunit 6 [Carica papaya]
 gi|170522370|gb|ACB20480.1| NADH dehydrogenase subunit 6 [Carica papaya]
          Length = 205

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 95/182 (52%), Gaps = 23/182 (12%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++
Sbjct: 10  ALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVV 69

Query: 75  MML-----DIDIEVAEPRKKRGFLG------SFF------IGILAAELIVCASNFMVFSA 117
           MM      +I  EV       G +G       FF      I +L  +    +  + V++ 
Sbjct: 70  MMFHIQKAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 129

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +      V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ 
Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVF 183

Query: 178 KQ 179
           ++
Sbjct: 184 RR 185


>gi|133900574|gb|ABO41453.1| NADH dehydrogenase subunit 6 [Leea guineensis]
          Length = 179

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVSRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129
           I        R    S  IG IL  E+     N  +     + + + L        V    
Sbjct: 63  IAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAEKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTQVKRQDIFRR 172


>gi|189095616|ref|YP_001936200.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. BAL208-1]
 gi|148540946|gb|ABQ86195.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. BAL208-1]
          Length = 183

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 95/161 (59%), Gaps = 8/161 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1   MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ + FLF+IM+      + +P K      S F+ +    +I    + +  S +   +
Sbjct: 60  VGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFLFYSLLTNSPKYISN 112

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            ++    N+  IG  LYT Y   + ++  +LL++M+GAI+L
Sbjct: 113 PVIGSRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILL 153


>gi|133900420|gb|ABO41376.1| NADH dehydrogenase subunit 6 [Clusia rosea]
          Length = 178

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852638|gb|ACV71331.1| NADH dehydrogenase subunit 6 [Cyrillopsis paraensis]
          Length = 178

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|47569789|ref|ZP_00240460.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10), putative
           [Bacillus cereus G9241]
 gi|47553531|gb|EAL11911.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10), putative
           [Bacillus cereus G9241]
          Length = 174

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 4/168 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ 
Sbjct: 8   FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E     L   
Sbjct: 68  IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             N   IG +LY++Y  P E+   ILL++++GAI+L    ++D K +D
Sbjct: 127 EKNTLQIGTLLYSKYIIPFELISVILLVALVGAIILA---KKDEKEED 171


>gi|163781770|ref|ZP_02176770.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882990|gb|EDP76494.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
          Length = 177

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 11/178 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F +FS  AIIS   V+T  NPIY +  L+ A +  AG+F   GAE V  + L++Y  A+ 
Sbjct: 7   FLIFSAWAIISGVGVITFTNPIYVILWLLSALIAVAGIFFTAGAELVGALQLLIYAVAIA 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           VF++F++  +  +  + +    R  G L    + +L  E+ +     +  S EG+    +
Sbjct: 67  VFYVFVLTAVPWEKAIKKGSHYRMEGVLSLPLVVLLYVEMAIVFFLGITASPEGKFRAFI 126

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
            K  N E +G +L+T+Y +  E+   +LL+ MIGA++        I R++ S+  E N
Sbjct: 127 EKLGNTEVVGSILFTRYFFAFEVVSLVLLIGMIGAVL--------IGRKE-SQTYEDN 175


>gi|257852740|gb|ACV71382.1| NADH dehydrogenase subunit 6 [Vitis aestivalis]
          Length = 178

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129
           I        R    S  IG IL  E+     N  +     + + + L        V    
Sbjct: 63  IAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAEKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|23268295|gb|AAN11292.1| NADH dehydrogenase subunit 6 [Lupinus albus]
          Length = 205

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 11/176 (6%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++
Sbjct: 10  ALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 69

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG 128
           M+  I I        R    S  IG IL  E+     N  +     + + + L   V+ G
Sbjct: 70  MLFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAG 129

Query: 129 -----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                 N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 130 KVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDVFRR 185


>gi|182412301|ref|YP_001817367.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus
           terrae PB90-1]
 gi|177839515|gb|ACB73767.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus
           terrae PB90-1]
          Length = 169

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 9/164 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M S  F +F  +A+I++   V  RN + +    + + +   GLF++L A  +A + L+VY
Sbjct: 1   MASFLFNVFVLLAVIAALGAVLNRNTVNAAMCFMLSLIGVTGLFVMLEAYLLAFVLLLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
            GAV   FLFI+M+LD       PR+  G   +   + +LA  ++       ++ A G  
Sbjct: 61  AGAVAALFLFIVMLLDTHTTKVRPRRPLGMFATLVSVALLAVGVLT------LYQAPGLA 114

Query: 122 SRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           +  V    G +++     L+T Y  P++I GF+LL++M+G IVL
Sbjct: 115 AAPVPTAVGASLKVYAYELFTTYLLPVQIVGFLLLIAMLGVIVL 158


>gi|262376769|ref|ZP_06069997.1| NADH dehydrogenase subunit I J [Acinetobacter lwoffii SH145]
 gi|262308479|gb|EEY89614.1| NADH dehydrogenase subunit I J [Acinetobacter lwoffii SH145]
          Length = 173

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 82/145 (56%), Gaps = 19/145 (13%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI+S+  VVT  NP++++ SLI + +  AG+FL++GA F   + ++VY GA++
Sbjct: 5   FYLMALVAIVSTVRVVTNANPVHALLSLIVSLLAVAGMFLIVGAPFAGALEVIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNFMVFSAEG 119
           V F+F++MML++  +  E  +K           L SF IG++            V +++ 
Sbjct: 65  VLFVFVVMMLNLGEQTVEQERKWLTSSAWAYPALMSFLIGLVLV---------WVLNSDY 115

Query: 120 ELSRLVFKGNNV--ENIGKVLYTQY 142
             + LV     V  + +G+ L+TQY
Sbjct: 116 TQASLVMGTEMVGPKAVGQALFTQY 140


>gi|255037785|ref|YP_003088406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter
           fermentans DSM 18053]
 gi|254950541|gb|ACT95241.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter
           fermentans DSM 18053]
          Length = 173

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 20/177 (11%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+++ FY+FS + +++   ++  RN IY  F+L  AF+  A L++L GA+F+A+  +++Y
Sbjct: 1   MEAIIFYIFSALTLLAGLFILVSRNLIYGAFALFLAFLGVAALYVLAGADFLAVSQIMIY 60

Query: 63  VGAVIVFFLFIIMMLDI-----------DIEVAEPRKKRGFL-GSFFIGILAAELIVCAS 110
           VG ++V  +F IM+               ++V   R+  G L G  F G+L    ++ +S
Sbjct: 61  VGGILVLLIFGIMLTQKREKSDDSTRHNRVDVPITRRIWGVLAGVGFFGLLVK--VILSS 118

Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +F +  AE      +   + +  IG  L T +  P E++  +LL+++IGA  L L  
Sbjct: 119 DFAMAGAE------MSTKSTIRTIGVELMTSHLLPFEVAAILLLVALIGAAYLALNR 169


>gi|229105886|ref|ZP_04236512.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-28]
 gi|229118790|ref|ZP_04248140.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock1-3]
 gi|228664660|gb|EEL20152.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock1-3]
 gi|228677545|gb|EEL31796.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-28]
          Length = 162

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + FS E     L     N   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159


>gi|133900402|gb|ABO41367.1| NADH dehydrogenase subunit 6 [Byrsonima crassifolia]
          Length = 179

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900386|gb|ABO41359.1| NADH dehydrogenase subunit 6 [Atuna racemosa]
 gi|133900418|gb|ABO41375.1| NADH dehydrogenase subunit 6 [Chrysobalanus icaco]
 gi|133900464|gb|ABO41398.1| NADH dehydrogenase subunit 6 [Hirtella bicornis]
          Length = 179

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900568|gb|ABO41450.1| NADH dehydrogenase subunit 6 [Vantanea guianensis]
          Length = 178

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852604|gb|ACV71314.1| NADH dehydrogenase subunit 6 [Dalechampia spathulata]
          Length = 178

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ++ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTRVKRQELFRR 172


>gi|133900430|gb|ABO41381.1| NADH dehydrogenase subunit 6 [Dicella nucifera]
 gi|133900494|gb|ABO41413.1| NADH dehydrogenase subunit 6 [Malpighia stevensii]
 gi|133900560|gb|ABO41446.1| NADH dehydrogenase subunit 6 [Thryallis longifolia]
          Length = 179

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI+    F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|219847957|ref|YP_002462390.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus aggregans DSM 9485]
 gi|219542216|gb|ACL23954.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           aggregans DSM 9485]
          Length = 168

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F + + +AI+ +  +V  RN ++S   L+  F   A LFLLL A F+  I L VY
Sbjct: 1   MELILFLITALIAIVGAVAMVVSRNAVHSALFLLLNFAAIAVLFLLLHAPFLFAIQLTVY 60

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            GA++V FLF++M+L  + +E A  R   ++       + +L   ++V          +G
Sbjct: 61  AGAIMVLFLFVVMLLGAEKVEDAPDRIAWQQPLALVLGLALLVIAVVVGLGGATTPPPDG 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           E    +    +  ++G +L+T Y  P E++GFILL++++G +VL  R R+
Sbjct: 121 E---ALVPFTDPRSLGGLLFTDYLLPFEVTGFILLIAVVGVVVLSQRGRK 167


>gi|34556908|ref|NP_906723.1| NADH dehydrogenase subunit J [Wolinella succinogenes DSM 1740]
 gi|34482623|emb|CAE09623.1| NADH OXIDOREDUCTASE I [Wolinella succinogenes]
          Length = 190

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 9/192 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLF+ ++     +VVT  N ++++ +L    +  +  F +LGAEF+ +  ++VY 
Sbjct: 3   ETIAFYLFAALSASMFLIVVTTNNVLHALSALAAGMIFISAFFFMLGAEFLGVAQIIVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+  + F +M  D    + E  + R  L      +    L++  + F+  S +     
Sbjct: 63  GAVMALYAFGMMFFDSSKAIKEKEENRWVLWVLIGIVTLLLLVILGAPFIHLSLDAR--H 120

Query: 124 LVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            + +G  N E IG VL+TQY  P E++  +LL++MI  IVL        K+ D S  L S
Sbjct: 121 PIPEGVGNTEAIGYVLFTQYLVPFELAAVMLLVAMIAGIVL------AGKKMDQSLTLMS 174

Query: 183 NPDNSIVMVKVK 194
           + +  I++ K K
Sbjct: 175 DEEAEILLKKTK 186


>gi|133900472|gb|ABO41402.1| NADH dehydrogenase subunit 6 [Hybanthus concolor]
          Length = 179

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFCNISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI     F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852584|gb|ACV71304.1| NADH dehydrogenase subunit 6 [Licania michauxii]
          Length = 178

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900512|gb|ABO41422.1| NADH dehydrogenase subunit 6 [Neoscortechinia kingii]
          Length = 179

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|319650856|ref|ZP_08004993.1| hypothetical protein HMPREF1013_01599 [Bacillus sp. 2_A_57_CT2]
 gi|317397454|gb|EFV78155.1| hypothetical protein HMPREF1013_01599 [Bacillus sp. 2_A_57_CT2]
          Length = 173

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 97/171 (56%), Gaps = 11/171 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F   + +A+I   L++ +   ++ V +L+F FV+ AG+++LL AEF+A + +++Y GA
Sbjct: 8   LAFMFLALVAVIGGVLLLNLTKVVHMVVALVFTFVSIAGIYVLLSAEFLAAVQILIYSGA 67

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           + +  LF IM+   + + +EP+    R  L    +   A  + +   N  + SA  +L  
Sbjct: 68  ITIIMLFGIMLTRHN-DTSEPKTGRFRKLLLFLGVLGFAFAVYIGIYNLDLPSAPNDLHV 126

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                NN E IG  LY+++  P E++  +LL+++IG+IVL    +RD +++
Sbjct: 127 -----NNTEQIGIELYSKFIIPFEVTSVLLLVALIGSIVLA---KRDDEKE 169


>gi|133900478|gb|ABO41405.1| NADH dehydrogenase subunit 6 [Irvingia malayana]
 gi|133900482|gb|ABO41407.1| NADH dehydrogenase subunit 6 [Klainedoxa gabonensis]
          Length = 179

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI+    F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|318040628|ref|ZP_07972584.1| NADH:ubiquinone oxidoreductase subunit J [Synechococcus sp. CB0101]
          Length = 199

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 97/181 (53%), Gaps = 17/181 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S +  I +  VV + N +YS F L   F++ AGL+LLL A FVA   ++VYV
Sbjct: 8   QLICFTVLSAVVAIGALGVVLLPNIVYSAFLLGGVFLSVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAE-P--RKKRGFLGSFFIGILAAELIVC-ASNFMVFSAE- 118
           GAV V  LF IM+++   ++A  P    +R   G+   G+ A  L V   + +     E 
Sbjct: 68  GAVNVLILFAIMLVNKKEDLAAIPGLAVRRLLSGAVCAGLFALLLRVAFTTPWATPGPEP 127

Query: 119 -GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            GE + +         IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+   DIS
Sbjct: 128 VGEEATI--------RIGEHLFSDYLLPFELASVLLLMAMIGAIVL---ARRDVLSADIS 176

Query: 178 K 178
            
Sbjct: 177 T 177


>gi|262373367|ref|ZP_06066646.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter junii
          SH205]
 gi|262313392|gb|EEY94477.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter junii
          SH205]
          Length = 173

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 58/82 (70%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F A + ++VY GA++
Sbjct: 5  FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAAALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++  E  E   K
Sbjct: 65 VLFVFVVMMLNLGQETVEQESK 86


>gi|300864217|ref|ZP_07109101.1| NADH dehydrogenase subunit J [Oscillatoria sp. PCC 6506]
 gi|300337791|emb|CBN54247.1| NADH dehydrogenase subunit J [Oscillatoria sp. PCC 6506]
          Length = 209

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 28/193 (14%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F L + M I ++  VV   N +YS F L   F++ AG++LLL A+FVA   +++YV
Sbjct: 8   QIVSFGLLAVMMIAAALGVVLFSNIVYSAFLLAGVFMSIAGIYLLLNADFVAAAQVLIYV 67

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----M 113
           GAV V  LF IM+++       I  A  RK             AA  +VC + F     M
Sbjct: 68  GAVNVLILFAIMLVNKREDFRAISNAWVRK-------------AATAVVCVALFALLGTM 114

Query: 114 VFSAEGELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
           V S    +S        +++  IGK  +T +  P E++   LL++M+GAI+L    RRD 
Sbjct: 115 VLSTPWAISTATLPAGESSIVVIGKHFFTDFLLPFELASVFLLMAMVGAIIL---ARRDY 171

Query: 172 KRQDISKQLESNP 184
              +I+ Q    P
Sbjct: 172 LPDEIAGQPLKQP 184


>gi|257852732|gb|ACV71378.1| NADH dehydrogenase subunit 6 [Cucumis sativus]
          Length = 180

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y+    +S  ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTM-HRTTHSAVKRQDVFRR 174


>gi|261820800|ref|YP_003258906.1| NADH dehydrogenase subunit J [Pectobacterium wasabiae WPP163]
 gi|261604813|gb|ACX87299.1| NADH dehydrogenase (quinone) [Pectobacterium wasabiae WPP163]
          Length = 186

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 16/183 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    +AI+++  V+T  NP++++  ++ + +  AG+F  LGA F   ++++VY GA++
Sbjct: 5   FYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++   V E  ++R +L  S +IG  IL+  L+V   N ++      L   
Sbjct: 65  VLFVFVVMMLNLGNSVEE--QERNWLKPSVWIGPSILSLALLVIVVNAIL-----SLKEQ 117

Query: 125 VFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G  VE   +G  L+  Y   +E++  +LL      +V+     R+ KR D+  +  +
Sbjct: 118 GITGTPVEAKAVGISLFGPYVLAVELASMLLL----AGLVVAFHIGREDKRGDVVNKEGA 173

Query: 183 NPD 185
           N D
Sbjct: 174 NQD 176


>gi|133900486|gb|ABO41409.1| NADH dehydrogenase subunit 6 [Leonia glycycarpa]
 gi|133900546|gb|ABO41439.1| NADH dehydrogenase subunit 6 [Rinorea pubiflora]
          Length = 179

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI     F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852574|gb|ACV71299.1| NADH dehydrogenase subunit 6 [Bonnetia sessilis]
          Length = 178

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-EVAEPRKK----RGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I E+ E   +     G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHESVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLQYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     + G ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFFLQGLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|148240625|ref|YP_001226012.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7803]
 gi|147849164|emb|CAK24715.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 7803]
          Length = 199

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 28/183 (15%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S + ++ +  VV + N +YS F L   F+  AGL+LLL A FVA   ++VYV
Sbjct: 8   QLISFLVLSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI---VCASNFMVFS---- 116
           GAV V  LF IM+++          KR  L     GI    L+   VCA  F++ +    
Sbjct: 68  GAVNVLILFAIMLVN----------KREDLAP-IPGIAVRRLLSGGVCAGLFVLLTRVVL 116

Query: 117 ----AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               A+G     + +G  +  IG+ L+T Y  P E++  +LL++MIGAIVL    RRD++
Sbjct: 117 TTPWAQG--PEPIGEGATIR-IGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVQ 170

Query: 173 RQD 175
             D
Sbjct: 171 AVD 173


>gi|133900516|gb|ABO41424.1| NADH dehydrogenase subunit 6 [Ostodes paniculata]
          Length = 179

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHKTTRVKRQDVFRR 172


>gi|227112319|ref|ZP_03825975.1| NADH dehydrogenase subunit J [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227326158|ref|ZP_03830182.1| NADH dehydrogenase subunit J [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 186

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 16/183 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    +AI+++  V+T  NP++++  ++ + +  AG+F  LGA F   ++++VY GA++
Sbjct: 5   FYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++   V E  ++R +L  S +IG  IL+  L+V   N ++      L   
Sbjct: 65  VLFVFVVMMLNLGNSVEE--QERNWLKPSVWIGPSILSLALLVIVVNAIL-----SLKEQ 117

Query: 125 VFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G  VE   +G  L+  Y   +E++  +LL      +V+     R+ KR D+  +  +
Sbjct: 118 GITGTPVEAKAVGISLFGPYVLAVELASMLLL----AGLVVAFHIGREDKRGDVVSKEGA 173

Query: 183 NPD 185
           N D
Sbjct: 174 NQD 176


>gi|67920417|ref|ZP_00513937.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Crocosphaera
           watsonii WH 8501]
 gi|67857901|gb|EAM53140.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Crocosphaera
           watsonii WH 8501]
          Length = 236

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 28/180 (15%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + II++  VV + N +YS F L   F++ +G+++LL A+FVA   +++Y
Sbjct: 35  VQIISFAILAGLVIITALGVVLLENIVYSAFLLGGVFISISGIYILLNADFVAAAQVLIY 94

Query: 63  VGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMV----- 114
           VGAV V  LF IM+++   +   +  P  +RG           A  +VCA  F +     
Sbjct: 95  VGAVNVLILFAIMLVNKKQDYSSIPTPWIRRG-----------ATALVCAGLFALLGTMV 143

Query: 115 ----FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
               +S E     L+   N V  IGK  ++ +  P E++  +LL++M+GAIVL    RRD
Sbjct: 144 LITPWSIESNAPGLI--ENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVL---ARRD 198


>gi|133900458|gb|ABO41395.1| NADH dehydrogenase subunit 6 [Garcinia hessii]
          Length = 179

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|294630805|ref|ZP_06709365.1| NADH dehydrogenase I, J subunit [Streptomyces sp. e14]
 gi|292834138|gb|EFF92487.1| NADH dehydrogenase I, J subunit [Streptomyces sp. e14]
          Length = 280

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 100/201 (49%), Gaps = 20/201 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++   +A+I +   V +R  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 14  EAFQFWVLGTVAVIGALCTVFMRKAVHSALSLAGTMIILAVFYLANGAYFLGIVQIVVYT 73

Query: 64  GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +       E  + ++    L     GIL    I  AS    F+  
Sbjct: 74  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGILLVAGIANAS-LKDFAGA 132

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G+ +       NVE +  +++T+Y Y  E++G +L+ + IGA+VL   HR   +R    +
Sbjct: 133 GKAN----ANGNVEGLASLIFTRYVYAFELTGALLITATIGAMVLT--HRERTERAKTQR 186

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           +L           +V+ GK +
Sbjct: 187 ELAEQ--------RVREGKHV 199


>gi|257852698|gb|ACV71361.1| NADH dehydrogenase subunit 6 [Hymenanthera alpina]
          Length = 178

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVPFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI     F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852670|gb|ACV71347.1| NADH dehydrogenase subunit 6 [Lachnostylis bilocularis]
          Length = 178

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLG------SFF------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G       FF      I +L       +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTHRNTTSMRYTVYAVK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +   + +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHKTKKVKRQDIFRR 172


>gi|222839810|ref|YP_002587031.1| NADH dehydrogenase subunit 6 [Glomus intraradices]
 gi|306960129|ref|YP_003875545.1| NADH dehydrogenase subunit 6 [Glomus irregulare]
 gi|222136772|gb|ACM45004.1| NADH dehydrogenase subunit 6 [Glomus intraradices]
 gi|306490559|gb|ADM94800.1| NADH dehydrogenase subunit 6 [Glomus irregulare]
          Length = 192

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 21/188 (11%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M      L  F+A++S+  V+T  NPI +V  LI  F+  +    LLG  F+A+  L++Y
Sbjct: 1   MSPFLLELLPFVAVLSAIFVITAVNPILAVLFLIAVFITVSAYLALLGLTFLALSYLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDI-------EVAEPRKKRGFL-GSFFIGILAAELIVCASNFMV 114
           VGA+ + FLF+IMMLDI +       E A       FL G+ F+  L    +        
Sbjct: 61  VGAIAILFLFVIMMLDIKLAELSSSGEEASKVYPIAFLIGTPFLWTLTGSPLFRGDTLYS 120

Query: 115 FSAEGEL-------------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           +  +  L             + L    +N+ ++G  LYT Y   L  +G ILLL++IG I
Sbjct: 121 WFDQTTLGIAHISDPSALQWTNLFAAFSNIHSLGVCLYTIYPLWLIYAGIILLLAIIGPI 180

Query: 162 VLMLRHRR 169
           +L L    
Sbjct: 181 ILCLDKTS 188


>gi|62263478|gb|AAX78164.1| unknown protein [synthetic construct]
          Length = 202

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 97/170 (57%), Gaps = 14/170 (8%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            +IF F+  A ++++L   ++A++ +VVYVGAV+V FLF++ MLD+ +E      ++G +
Sbjct: 26  EMIFTFIFTAAVWIILQQVYLALLLIVVYVGAVLVMFLFVVFMLDLHVE------EQGRV 79

Query: 94  GSFFIGILAAELIVCA--SNFMVFSAEGELSRLVFKG--NNVENIGKVLYTQYA-YPLEI 148
           G FF  +  A ++VCA  +  + ++A    +  + +G    ++ IG  +++    Y  E+
Sbjct: 80  GRFFYAL--AAVVVCAIFATVISYAATNVFAGAMMQGGVGGLKIIGLTMFSNANLYVFEL 137

Query: 149 SGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
             FILL +M  AI L LR  R+  K  D ++Q++    + + MVK+ S  
Sbjct: 138 VDFILLAAMTAAITLTLRAKRKGNKTVDPAQQVKVRAKDRLTMVKMPSNN 187


>gi|257852594|gb|ACV71309.1| NADH dehydrogenase subunit 6 [Garcinia macrophylla]
          Length = 178

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|56791552|gb|AAW30314.1| NADH dehydrogenase subunit 6 [Amborella trichopoda]
          Length = 178

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 27/184 (14%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+ V FLF++
Sbjct: 2   ALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVV 61

Query: 75  MMLDIDIEVAEPRKK-------RGFLGSFF------------IGILAAELIVCASNFMVF 115
           MM   +I++AE  ++        G +G  F            I +L       +  + V+
Sbjct: 62  MMF--NIQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRKTTSLRYTVY 119

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           + +      V    N E +G +LYT Y+    +   ILL++MIGAIV  +     ++RQD
Sbjct: 120 AGK------VRSWTNSETLGNLLYTYYSVWFLVPSPILLVAMIGAIVQTMHSTTKVQRQD 173

Query: 176 ISKQ 179
           + ++
Sbjct: 174 VFRR 177


>gi|257852692|gb|ACV71358.1| NADH dehydrogenase subunit 6 [Trigoniastrum hypoleucum]
          Length = 178

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129
           I        R    S  IG IL  E+     N  +     +   + L        V    
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +K+QDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKKQDIFRR 172


>gi|257852702|gb|ACV71363.1| NADH dehydrogenase subunit 6 [Brunellia acutangula]
          Length = 170

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 23/170 (13%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI----- 81
           NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I I     
Sbjct: 1   NPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFHIQIAEIHE 60

Query: 82  EVAEPRKKRGFLG------SFF------IGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
           EV       G +G       FF      I +L  +    +  + V++ +      V    
Sbjct: 61  EVLRYLPVSGIMGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK------VRSWT 114

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 115 NLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 164


>gi|257852592|gb|ACV71308.1| NADH dehydrogenase subunit 6 [Garcinia latissima]
          Length = 178

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIQLLPTQRKTAYLKYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900576|gb|ABO41454.1| NADH dehydrogenase subunit 6 [Tetrastigma obovatum]
 gi|133900578|gb|ABO41455.1| NADH dehydrogenase subunit 6 [Tetrastigma rumicispermum]
 gi|133900580|gb|ABO41456.1| NADH dehydrogenase subunit 6 [Tetrastigma voinierianum]
          Length = 179

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129
           I        R    S  IG IL  E+     N  +     +   + L        V    
Sbjct: 63  IAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAEKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|133900432|gb|ABO41382.1| NADH dehydrogenase subunit 6 [Dichapetalum macrocarpum]
          Length = 179

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129
           I        R    S  IG IL  E+     N  +     +   + L        V    
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900410|gb|ABO41371.1| NADH dehydrogenase subunit 6 [Caryocar glabrum]
          Length = 179

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V    NP++SV   I  F++ +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAPNPVHSVLFPILVFLDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852576|gb|ACV71300.1| NADH dehydrogenase subunit 6 [Ploiarium alternifolium]
          Length = 178

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|113953515|ref|YP_731811.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9311]
 gi|113880866|gb|ABI45824.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6
           [Synechococcus sp. CC9311]
          Length = 199

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 12/175 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F   S + ++ +  VV + N +YS F L   F+  AGL+LLL A FVA   ++VYV
Sbjct: 8   QLICFLALSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAE-P--RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           GAV V  LF IM+++   ++A  P    +R   G   +G+ A       +  +V +   E
Sbjct: 68  GAVNVLILFAIMLVNKKEDLAPIPGLPIRRLLSGGVCVGLFA-----LLTRVVVTTPWTE 122

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
               + +   V  IG+ L+T Y  P E++  +LL++MIGAIVL    RRD++  D
Sbjct: 123 GPTPIGEDATVR-IGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVQSVD 173


>gi|257852578|gb|ACV71301.1| NADH dehydrogenase subunit 6 [Anthodiscus amazonicus]
          Length = 178

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V    NP++SV   I  F++ +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAPNPVHSVLFSILVFLDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|253689140|ref|YP_003018330.1| NADH dehydrogenase (quinone) [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755718|gb|ACT13794.1| NADH dehydrogenase (quinone) [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 186

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 18/184 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    +AI+++  V+T  NP++++  ++ + +  AG+F  LGA F   ++++VY GA++
Sbjct: 5   FYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPR----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           V F+F++MML++   V E      K   ++G    GIL+  L+V   N ++      L  
Sbjct: 65  VLFVFVVMMLNLGNSVEEQERNWLKPSAWVGP---GILSLALLVIVVNAIL-----SLKE 116

Query: 124 LVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
               G  VE   +G  L+  Y   +E++  +LL      +V+     R+ KR D+  +  
Sbjct: 117 QGITGTPVEAKAVGISLFGPYVLAVELASMLLL----AGLVVAFHIGREDKRGDVVSKEG 172

Query: 182 SNPD 185
           +N D
Sbjct: 173 ANQD 176


>gi|11467927|ref|NP_057988.1| NADH dehydrogenase subunit 6 [Scenedesmus obliquus]
 gi|8099192|gb|AAF72047.1|AF204057_2 NADH dehydrogenase subunit 6 [Scenedesmus obliquus]
 gi|7711049|emb|CAB90373.1| NADH dehydrogenase subunit 6 [Scenedesmus obliquus]
          Length = 219

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 34/215 (15%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L +  A++S FL++  +NP++SVF L+  F++ +GL +LLG E+  ++ L+VYVGA+ 
Sbjct: 5   FALIATGALMSVFLMMRSKNPVHSVFYLVLLFLHCSGLLVLLGLEYFVLLQLLVYVGALA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCA----SNFMV---FSAEG 119
           + FLF++M+LDI   E+   R +RG       G+L   LI+ A    +  +V   F    
Sbjct: 65  ILFLFVVMLLDIPSTEIL--RHQRGTYP--VAGVLGLCLILSALLAFTQPLVESPFQTSP 120

Query: 120 ELSRLVFKGNN----------------------VENIGKVLYTQYAYPLEISGFILLLSM 157
             +   F G N                      V N+G  LY  +A  L I   +LL++M
Sbjct: 121 IPTTSTFTGQNSDFVSSSRHYSFWNNYRTATSTVANLGIRLYGVHADLLIIRSLLLLVAM 180

Query: 158 IGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
           +GA+ L L+    +  QD+ +Q   +   S+V + 
Sbjct: 181 VGAVGLTLKRPVSVPNQDVFRQHYVDFQKSLVQIP 215


>gi|133900390|gb|ABO41361.1| NADH dehydrogenase subunit 6 [Balanops vieillardii]
          Length = 179

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI+    F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 VRSWTNLEALGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900504|gb|ABO41418.1| NADH dehydrogenase subunit 6 [Mesua sp. Coode 7884]
          Length = 179

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900394|gb|ABO41363.1| NADH dehydrogenase subunit 6 [Bernardia incana]
          Length = 179

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G ++YT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLIYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTRVKRQDLFRR 172


>gi|163848449|ref|YP_001636493.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus aurantiacus J-10-fl]
 gi|222526377|ref|YP_002570848.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus sp. Y-400-fl]
 gi|163669738|gb|ABY36104.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450256|gb|ACM54522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           sp. Y-400-fl]
          Length = 168

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 89/167 (53%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F + + +AII +  ++  RN ++S   L+  F   A LFLLL A F+  I L VY
Sbjct: 1   MELILFLITALIAIIGAVAMLVSRNAVHSALFLLLNFAAIAVLFLLLNAPFLFAIQLTVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF++M+L  +     P +         +  LA  +I         +     S
Sbjct: 61  AGAIMVLFLFVVMLLGAEKVEDTPDQIPWQQPLALLLGLALLVISVVVGLGGATNPPPES 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             + + ++ + +G +L+T Y  P E++GFILL+++IG +VL  R R+
Sbjct: 121 EALAQFSDPQTLGALLFTDYLLPFEVTGFILLIAVIGVVVLNQRGRK 167


>gi|133900398|gb|ABO41365.1| NADH dehydrogenase subunit 6 [Brexia madagascariensis]
 gi|133900438|gb|ABO41385.1| NADH dehydrogenase subunit 6 [Elaeodendron orientale]
 gi|133900500|gb|ABO41416.1| NADH dehydrogenase subunit 6 [Gymnosporia arbutifolia]
 gi|133900502|gb|ABO41417.1| NADH dehydrogenase subunit 6 [Gymnosporia senegalensis]
          Length = 179

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|228936578|ref|ZP_04099373.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823093|gb|EEM68930.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 162

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYLAVNNIDFANESAQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159


>gi|133900528|gb|ABO41430.1| NADH dehydrogenase subunit 6 [Podocalyx loranthoides]
          Length = 179

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTLVKRQDIFRR 172


>gi|315445438|ref|YP_004078317.1| NADH dehydrogenase subunit J [Mycobacterium sp. Spyr1]
 gi|315263741|gb|ADU00483.1| NADH dehydrogenase subunit J [Mycobacterium sp. Spyr1]
          Length = 239

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 97/184 (52%), Gaps = 16/184 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +++  +  V+     +YS  SL    +  A L++  GA F+ ++ +VVY 
Sbjct: 3   ETILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAEL---IVCASNFMVFSA 117
           GAV++ FLF++MM+ +D     V   R +R       I  LA  L   I+  +     SA
Sbjct: 63  GAVMMLFLFVLMMIGVDSSESLVETLRGQR-------IAALAVGLGFGILLIAGIGSVSA 115

Query: 118 EGELS-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            G +       G NVE +  +++T+Y +  E++G +L+ + +GA+VL   HR   +R+  
Sbjct: 116 TGIVGLDQANGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLA--HRERFQRRKT 173

Query: 177 SKQL 180
            ++L
Sbjct: 174 QREL 177


>gi|257852738|gb|ACV71381.1| NADH dehydrogenase subunit 6 [Fagus grandifolia]
          Length = 178

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|330339526|ref|YP_004376727.1| NADH dehydrogenase subunit 6 [Paracorallium japonicum]
 gi|328750567|dbj|BAK18829.1| NADH dehydrogenase subunit 6 [Paracorallium japonicum]
          Length = 184

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 17/188 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLF  + S   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1   MNSLFI-IISLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ + FLF+IM+      + +P K      S F+ +    +I    + +  S +   +
Sbjct: 60  VGAIAILFLFVIML------IQQPNKVYYQDHSHFLPV-GLSVIFLFYSLLTNSPKYISN 112

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR---------HRRDIKR 173
            ++    N+  IG  LYT Y   + ++  +LL++M+GAI+L  +         H     R
Sbjct: 113 PVIGSRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILLAKQPNTPSLYDSHVEIRSR 172

Query: 174 QDISKQLE 181
           QD+  Q+ 
Sbjct: 173 QDLFLQIS 180


>gi|257852654|gb|ACV71339.1| NADH dehydrogenase subunit 6 [Lophira lanceolata]
 gi|257852656|gb|ACV71340.1| NADH dehydrogenase subunit 6 [Luxemburgia octandra]
          Length = 178

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  +MV++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852618|gb|ACV71321.1| NADH dehydrogenase subunit 6 [Omphalea diandra]
          Length = 180

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 13/172 (7%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +  ++ L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNMASLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +   R   +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHSNRHGAVKRQDVFRR 174


>gi|239943485|ref|ZP_04695422.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998]
 gi|239989939|ref|ZP_04710603.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 11379]
 gi|291446956|ref|ZP_06586346.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998]
 gi|291349903|gb|EFE76807.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998]
          Length = 289

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 102/199 (51%), Gaps = 18/199 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V ++  ++S  SL    +  A  +L  GA F+ ++ ++VY 
Sbjct: 14  EAIQFWILGTVAVIGALSTVLMKKAVHSALSLAGTMIILAVFYLANGAYFLGIVQIIVYT 73

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLG---SFFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +     + E  K + +L    S   GIL   LI    N  + +  
Sbjct: 74  GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAGCSLGFGIL---LIAGIGNASLSTFN 130

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL   HR   +R    +
Sbjct: 131 GLGAANAQHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMVLT--HRERTERARTQR 188

Query: 179 QLESNPDNSIVMVKVKSGK 197
           +L           +V+ GK
Sbjct: 189 ELAEQ--------RVREGK 199


>gi|269836330|ref|YP_003318558.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785593|gb|ACZ37736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphaerobacter
           thermophilus DSM 20745]
          Length = 242

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 18/159 (11%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           R P++S  SL+ +FVN A ++++L AEF+A   ++VY GA++V  LF+IM++        
Sbjct: 26  RKPVHSALSLVVSFVNVAAIYVILRAEFLAAAQIIVYTGAILVLVLFVIMLV-------H 78

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSA---------EGELSRLVFK--GNNVENI 134
           P     F G   I  + A ++       V +A          G  S    +  G N + +
Sbjct: 79  PEDLPEFHGGRPIQRVLALILGLVLLGEVLAAILTRTVVGQPGPWSEQAVQAVGGNTQAL 138

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           G+VLY+ Y  P++ +  +LL++ IGA+VL       ++R
Sbjct: 139 GQVLYSGYVLPIQATALLLLVATIGALVLARPETPRVRR 177


>gi|133900388|gb|ABO41360.1| NADH dehydrogenase subunit 6 [Austrobuxus megacarpus]
          Length = 179

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML--- 77
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM    
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIK 62

Query: 78  --DIDIEVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
             +I  EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  KAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|228924029|ref|ZP_04087305.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835519|gb|EEM80884.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 162

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 89/161 (55%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D K ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEEE 159


>gi|229175967|ref|ZP_04303464.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus MM3]
 gi|228607561|gb|EEK64886.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus MM3]
          Length = 162

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTQHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159


>gi|257852590|gb|ACV71307.1| NADH dehydrogenase subunit 6 [Montrouziera cauliflora]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F   +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|253698807|ref|YP_003019996.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M21]
 gi|251773657|gb|ACT16238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M21]
          Length = 160

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 11/169 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+ + + +I +   +T R  + ++  L+ +F   A +F LLGA FVA + +++Y
Sbjct: 1   MERIIFYILAAVTVIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPFVAALEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++V FLF+IMM    +E+A P K  +  L  ++  ++   ++V +   +V    G+ 
Sbjct: 61  AGAIMVLFLFVIMM----VELASPEKLPKPTLSDWWPALILVLVVVASLTVLV---AGQA 113

Query: 122 SRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             +   G   V    +VL+T+Y   +E+    LL +++GA  L L  RR
Sbjct: 114 PPVPGAGAQTVRQFSQVLFTRYGVAIELVSMQLLFALVGA--LYLGRRR 160


>gi|258593442|emb|CBE69781.1| NAD(P)H-quinone oxidoreductase chain 6 (NAD(P)H dehydrogenase I,
           chain 6) (NDH-1, chain 6) [NC10 bacterium 'Dutch
           sediment']
          Length = 170

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 4/161 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+L +   + +S LVV  +N ++   +L+FAF   A LF+LL AEF+A   +++YVG + 
Sbjct: 11  FFLMAAFTVGASLLVVLAKNIVHCAIALVFAFFGVAALFVLLDAEFLAAAQVLLYVGGIT 70

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  LF IM+    I     +     +G   + +LA   ++  +N   F A   +   +  
Sbjct: 71  ILLLFAIMLTS-RISAGGVKIMNEQVGISAVVVLAIVGLLAYANLKGFPA---MVPPLTM 126

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            +N  +IGK+L T Y  P E+   +LL +M+GAI+L  R R
Sbjct: 127 ADNTASIGKLLLTTYVLPFEVVSLLLLAAMVGAIILARRER 167


>gi|182436768|ref|YP_001824487.1| NADH dehydrogenase subunit J [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326777363|ref|ZP_08236628.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465284|dbj|BAG19804.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657696|gb|EGE42542.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           cf. griseus XylebKG-1]
          Length = 288

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 97/182 (53%), Gaps = 10/182 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V ++  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 14  EAIQFWILGTVAVIGALSTVLLKRAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVYT 73

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLG---SFFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +     + E  K + +L        GIL   LI    N  + + E
Sbjct: 74  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALGCGLGFGIL---LIAGIGNASLSTFE 130

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  +     G N+E +  +++T+Y +  EI+G +L+ + +GA+VL   HR   +R    +
Sbjct: 131 GLGAANAAHGGNIEGLANLIFTKYVFAFEITGALLITATVGAMVLT--HRERTERAKTQR 188

Query: 179 QL 180
           ++
Sbjct: 189 EM 190


>gi|133900554|gb|ABO41443.1| NADH dehydrogenase subunit 6 [Scyphostegia borneensis]
          Length = 179

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI     F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172


>gi|229315898|ref|YP_002860124.1| NADH dehydrogenase subunit 6.1 [Micromonas sp. RCC299]
 gi|229315908|ref|YP_002860134.1| NADH dehydrogenase subunit 6.2 [Micromonas sp. RCC299]
 gi|226431183|gb|ACO55588.1| NADH dehydrogenase subunit 6.1 [Micromonas sp. RCC299]
 gi|226431193|gb|ACO55598.1| NADH dehydrogenase subunit 6.2 [Micromonas sp. RCC299]
          Length = 268

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 56/79 (70%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M  + FY+F+  A+++  +V+  +NP+YSV  LI  F N +GL LL+  +F AM+ LVVY
Sbjct: 1  MNLVLFYMFASFALLAGIMVIRAKNPVYSVLFLILVFCNVSGLLLLINLDFFAMVFLVVY 60

Query: 63 VGAVIVFFLFIIMMLDIDI 81
          VGA+ V FLF++MML++ +
Sbjct: 61 VGAIAVLFLFVVMMLNVKL 79



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186
           +   +  IG V+YT Y     ++  ILL++MIG+IVL +     +KRQD+ +Q  +  D 
Sbjct: 201 QTTTIHTIGHVVYTYYMVFFILASIILLIAMIGSIVLTMHKGVFVKRQDVFEQ--NTRDF 258

Query: 187 SIVMVKVKS 195
           S  + KVKS
Sbjct: 259 SKTLRKVKS 267


>gi|219669762|ref|YP_002460197.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfitobacterium hafniense DCB-2]
 gi|219540022|gb|ACL21761.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfitobacterium hafniense DCB-2]
          Length = 170

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 95/165 (57%), Gaps = 10/165 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++ F++F+ +A+ S++ VVT +N ++S F L  +F   A L++LL AE++A + L+VY
Sbjct: 4   MATIVFFIFAIIAVASAWGVVTSKNIVHSAFFLALSFAGVAVLYVLLNAEYLAAVQLLVY 63

Query: 63  VGAVIVFFLFIIMM-LDIDIEVAEPRKKR---GFLGSFFIGILAAELIVCASNFMVFSAE 118
            GA+ +  +F +M+ L  D+  + P  K+   G L S  + I+ A +I+  S++ +    
Sbjct: 64  AGAISIMVIFAVMLTLRGDVAESSPVTKKWTQGALVSALVFIVLALVILTNSDWRI---- 119

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
             L+     G     + K+L + Y  P E +  ++ +++IGA+++
Sbjct: 120 --LAMPALAGGTTVELSKLLLSWYMVPFEAAAILITVALIGAVII 162


>gi|257852640|gb|ACV71332.1| NADH dehydrogenase subunit 6 [Ixonanthes reticulata]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|229014462|ref|ZP_04171580.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides DSM
           2048]
 gi|229020512|ref|ZP_04177259.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1273]
 gi|229026729|ref|ZP_04183066.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1272]
 gi|229063944|ref|ZP_04200243.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH603]
 gi|229136109|ref|ZP_04264863.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST196]
 gi|229170001|ref|ZP_04297694.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH621]
 gi|228613519|gb|EEK70651.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH621]
 gi|228647354|gb|EEL03435.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST196]
 gi|228716350|gb|EEL68060.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH603]
 gi|228734577|gb|EEL85234.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1272]
 gi|228740783|gb|EEL91034.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1273]
 gi|228746812|gb|EEL96697.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides DSM
           2048]
          Length = 162

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + FS +     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNQSTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D   +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEGEED 159


>gi|228988518|ref|ZP_04148607.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229142033|ref|ZP_04270558.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST26]
 gi|229199416|ref|ZP_04326081.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1293]
 gi|228584130|gb|EEK42283.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1293]
 gi|228641322|gb|EEK97628.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST26]
 gi|228771234|gb|EEM19711.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 162

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159


>gi|133900510|gb|ABO41421.1| NADH dehydrogenase subunit 6 [Monotaxis megacarpa]
          Length = 181

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDLFRR 174


>gi|257852642|gb|ACV71333.1| NADH dehydrogenase subunit 6 [Ochthocosmus longipedicellatus]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|228911134|ref|ZP_04074940.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           IBL 200]
 gi|228848497|gb|EEM93345.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           IBL 200]
          Length = 162

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAIVL  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLAKKDEKE 157


>gi|288819088|ref|YP_003433436.1| NADH dehydrogenase I chain J [Hydrogenobacter thermophilus TK-6]
 gi|288788488|dbj|BAI70235.1| NADH dehydrogenase I chain J [Hydrogenobacter thermophilus TK-6]
 gi|308752671|gb|ADO46154.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobacter thermophilus TK-6]
          Length = 163

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 21/170 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +   L S   ++S+   + ++NP++ + + +   +  AG+FL + AE +A + L++Y
Sbjct: 1   MEWVITALLSLWLVLSALCTIFMKNPVHVILAFLSVILAMAGIFLQMKAELLAGLQLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS---------NFM 113
             A++VF++ +I ++  +      + KR      F GI   EL   A          ++M
Sbjct: 61  AVAIVVFYVLVITVIPWE------KVKR------FEGIYKQELFWGAPFFLISFLLMSYM 108

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           V   +      V  G+NV ++GK L+T Y +P E++  ILL++MIGAI+L
Sbjct: 109 VLKGKFAQPLNVISGDNVRDVGKNLFTSYLFPFEVASVILLVAMIGAILL 158


>gi|257852634|gb|ACV71329.1| NADH dehydrogenase subunit 6 [Eliea articulata]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900558|gb|ABO41445.1| NADH dehydrogenase subunit 6 [Tapura guianensis]
          Length = 179

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129
           I        R    S  IG IL  E+     N  +     +   + L        V    
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172


>gi|50083957|ref|YP_045467.1| NADH dehydrogenase I chain J [Acinetobacter sp. ADP1]
 gi|49529933|emb|CAG67645.1| NADH dehydrogenase I chain J [Acinetobacter sp. ADP1]
          Length = 173

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 57/82 (69%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL + +AIIS+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5  FYLMALVAIISTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++     E  +K
Sbjct: 65 VLFVFVVMMLNLGRHTVEQERK 86


>gi|257852714|gb|ACV71369.1| NADH dehydrogenase subunit 6 [Plagiopteron suaveolens]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  ISEIQEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRYTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VGSWTNLETLGNLLYTYYVVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|257852648|gb|ACV71336.1| NADH dehydrogenase subunit 6 [Durandea pentagyna]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     + + + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900378|gb|ABO41355.1| NADH dehydrogenase subunit 6 [Acharia tragodes]
          Length = 181

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 25/178 (14%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI+    F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 118 IRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTSHSAVKRQDIFRR 174


>gi|226355368|ref|YP_002785108.1| NADH dehydrogenase (quinone) subunit J [Deinococcus deserti VCD115]
 gi|226317358|gb|ACO45354.1| putative NADH dehydrogenase (quinone), subunit J (NADH-quinone
           oxidoreductase, subunit J) [Deinococcus deserti VCD115]
          Length = 199

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 14/193 (7%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F L   +A++   + +  RN +++   L+   +  AGLF  + A F+A I ++VY GA
Sbjct: 3   LAFILLGALALVGGVITIAARNAVHASLGLVGTLLCVAGLFATMNASFLAAIQVIVYAGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           ++V FLF+IMML+ +  V   R    F   L S    +LA   +V A  +       E +
Sbjct: 63  IMVLFLFVIMMLNANAPVTG-RDPVPFVRELASIGGVLLAGAFVVLAFTYRDPRPLAEGA 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
               +G     +G+ L T++  P E    +LL++++GA+ L+ R            Q + 
Sbjct: 122 E-ALRGGGAGPVGETLLTRFLLPFEAVSILLLVAIVGAVALVQRPE---------PQTDG 171

Query: 183 NPDNSIVMVKVKS 195
            PD+    + V  
Sbjct: 172 LPDSDAETLPVTP 184


>gi|42525211|ref|NP_970591.1| NADH dehydrogenase I chain J [Bdellovibrio bacteriovorus HD100]
 gi|39577422|emb|CAE81245.1| NADH dehydrogenase I chain J [Bdellovibrio bacteriovorus HD100]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 5/168 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +  F+  +F+ + S   V+ + NPIYS   L    V  + LF+ L A F+A + L+
Sbjct: 1   MTADAFLFWFLAFVTLASGLSVILMSNPIYSALCLAMTMVGISALFVTLNAYFIAGVQLI 60

Query: 61  VYVGAVIVFFLFIIMMLDI--DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           VY GAV+V F  +IM+ D+  D++     K  G +    +G+ A  ++   +  +    E
Sbjct: 61  VYAGAVMVLFTMVIMLFDLKKDVQAFTRGKFTGVVKIASVGLFAGLVVGAIAMSVNLMGE 120

Query: 119 GELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                 V  G  +E+   +G++L+T+Y +  E  G +LL+  +GA+ L
Sbjct: 121 KTTDNPVLVGTGMESTKALGQILFTKYIFGFEALGVLLLVIAVGAVAL 168


>gi|257852750|gb|ACV71387.1| NADH dehydrogenase subunit 6 [Calycanthus floridus]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 27/178 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++ V   I  F + +GL LLLG +F AMI+LVV++GA+   FLF++MM    
Sbjct: 3   MVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISLVVHIGAIAASFLFVVMMF--H 60

Query: 81  IEVAEPRKK-------RGFLGSFF------------IGILAAELIVCASNFMVFSAEGEL 121
           I++AE  ++        G +G  F            I +L       +  + V + +   
Sbjct: 61  IQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVHAGK--- 117

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
              V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 ---VRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|257852632|gb|ACV71328.1| NADH dehydrogenase subunit 6 [Cratoxylum formosum]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|225850950|ref|YP_002731184.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit
           j) (ndh-1 subunit j) [Persephonella marina EX-H1]
 gi|225645392|gb|ACO03578.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit
           j) (ndh-1 subunit j) [Persephonella marina EX-H1]
          Length = 176

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 17/177 (9%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS +AI+S+  VV  +N IY+V SLI   +  +GLF  +GAE +  + ++
Sbjct: 1   MELNTVAFYTFSTLAILSAVGVVFFKNIIYAVLSLISTLIMVSGLFFTMGAELIGGLQIL 60

Query: 61  VYVGAVIVFFLFIIMML------DIDIEVAEPRKKRGFLGSFFIGILAAELI-VCASNFM 113
           +Y  A++VF++ +I  +       +D +        GFL   FI +    L     +N  
Sbjct: 61  IYAVAIVVFYVLVISTVPEFKGRSVDPKYMLTSIPVGFL--IFIELAYVSLYGAWEANKG 118

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +F+ E     +V +  NV+ +  +L+T+Y +P E++  ILL++MIGAI   L  R+D
Sbjct: 119 IFTPE-----VVNEVGNVKAVATMLFTKYLFPFEVASLILLVAMIGAI---LIGRKD 167


>gi|257852582|gb|ACV71303.1| NADH dehydrogenase subunit 6 [Centroplacus glaucinus]
          Length = 178

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852724|gb|ACV71374.1| NADH dehydrogenase subunit 6 [Afrostyrax sp. Cheek 5007]
          Length = 180

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174


>gi|50121943|ref|YP_051110.1| NADH dehydrogenase subunit J [Pectobacterium atrosepticum SCRI1043]
 gi|49612469|emb|CAG75919.1| NADH-quinone oxidoreductase chain J [Pectobacterium atrosepticum
           SCRI1043]
          Length = 187

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 101/184 (54%), Gaps = 17/184 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    +AI+++  V+T  NP++++  ++ + +  AG+F  LGA F   ++++VY GA++
Sbjct: 5   FYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++   V E  ++R +L  S +IG  IL+  L+V   N ++      L   
Sbjct: 65  VLFVFVVMMLNLGSSVEE--QERNWLKPSVWIGPSILSLALLVIVVNAIL-----SLKDQ 117

Query: 125 VFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD-ISKQLE 181
              G  VE   +G  L+  Y   +E++  +LL      +V+     R+ KR D ++K+  
Sbjct: 118 GITGTPVEAKAVGISLFGPYVLAVELASMLLL----AGLVVAFHIGREDKRGDVVNKEGG 173

Query: 182 SNPD 185
           +N D
Sbjct: 174 ANQD 177


>gi|133900468|gb|ABO41400.1| NADH dehydrogenase subunit 6 [Hugonia platysepala]
          Length = 179

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     + + + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852630|gb|ACV71327.1| NADH dehydrogenase subunit 6 [Sacoglottis gabonensis]
          Length = 178

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|228917903|ref|ZP_04081439.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930300|ref|ZP_04093306.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228949014|ref|ZP_04111287.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229094403|ref|ZP_04225476.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-42]
 gi|229124797|ref|ZP_04253976.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           95/8201]
 gi|228658672|gb|EEL14333.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           95/8201]
 gi|228689004|gb|EEL42830.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-42]
 gi|228810770|gb|EEM57118.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228829359|gb|EEM74990.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841700|gb|EEM86811.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 162

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESAQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159


>gi|297181765|gb|ADI17946.1| NADH:ubiquinone oxidoreductase subunit 6 (chain j) [uncultured
           Desulfobacterales bacterium HF0200_07G10]
          Length = 169

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 96/164 (58%), Gaps = 4/164 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L FY  + + ++ +  VV   +P+ S  SLI   +  AG+F+L  A F+A++ +++Y
Sbjct: 1   MELLIFYPLAGLCVLLALGVVFNNSPVGSAISLIGMMLGLAGIFILQQAHFIAILQIIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GA++V F+F+IM+L++    +     +++  L S   G+LA  ++   S+ ++FS +  
Sbjct: 61  AGAIMVLFMFVIMLLNLKKGDDTGWTAREKNLLLSILTGLLAIGILYKISD-IIFSGKMA 119

Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
              ++      V NIGK L+T Y  P E++  +LL +M+GA+VL
Sbjct: 120 TPAILPDSFGTVANIGKTLFTDYVLPFEVASILLLAAMVGAVVL 163


>gi|133900556|gb|ABO41444.1| NADH dehydrogenase subunit 6 [Stachystemon axillaris]
          Length = 179

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +    ++KRQ I ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTEVKRQGIFRR 172


>gi|133900526|gb|ABO41429.1| NADH dehydrogenase subunit 6 [Pimelodendron zoanthogyne]
          Length = 167

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 85/165 (51%), Gaps = 11/165 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE-----LSRLVFKG-----N 129
           I        R    S  IG IL  E+     N  +     +     LS  V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLSYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 167


>gi|133900384|gb|ABO41358.1| NADH dehydrogenase subunit 6 [Archytaea triflora]
          Length = 179

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900408|gb|ABO41370.1| NADH dehydrogenase subunit 6 [Carpotroche longifolia]
 gi|133900446|gb|ABO41389.1| NADH dehydrogenase subunit 6 [Erythrospermum phytolaccoides]
          Length = 181

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 15/173 (8%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174


>gi|133900562|gb|ABO41447.1| NADH dehydrogenase subunit 6 [Trichadenia zeylanica]
          Length = 180

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 15/173 (8%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174


>gi|281428836|ref|YP_003355013.1| NADH dehydrogenase subunit 6 [Ircinia strobilina]
 gi|251765336|gb|ACT15488.1| NADH dehydrogenase subunit 6 [Ircinia strobilina]
          Length = 169

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 12/177 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   F YL S   ++S+ +V+  ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VY
Sbjct: 1   MYLFFCYLLSVGIMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFLAFLLLLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF++M+L ++ +  +  K +  +  F    L           + F   G   
Sbjct: 61  VGAIMVLFLFVLMILMLNEDELQGEKSKLVVFVFLFFFLFLFCFKIGQ--VTFPNWGANE 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV----LMLRHRRDIKRQD 175
           R       +  +G+ LY +Y        FILLL+MIG +     L+      +KR+ 
Sbjct: 119 R------GIVLLGRGLYIEYGEAFIAGSFILLLAMIGVVELVGDLIWESNSGVKRRG 169


>gi|257852572|gb|ACV71298.1| NADH dehydrogenase subunit 6 [Pangium edule]
          Length = 181

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 15/173 (8%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174


>gi|120402874|ref|YP_952703.1| NADH dehydrogenase subunit J [Mycobacterium vanbaalenii PYR-1]
 gi|119955692|gb|ABM12697.1| NADH dehydrogenase subunit J [Mycobacterium vanbaalenii PYR-1]
          Length = 241

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++F+ +++  +  VV     +YS  SL    +  A L++   A F+ ++ +VVY 
Sbjct: 3   EAVLFWVFAVVSVTGALGVVAAPKAVYSAISLATTMIALAVLYIAQDAPFLGVVQIVVYT 62

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFS 116
           GAV++ FLF++M++ +D     +E    ++    +     G+L  A    V A+ F+   
Sbjct: 63  GAVMMLFLFVLMLIGVDSSESLVETLRGQRVAAIVVGLGFGVLLVAGVGNVSATGFVGLD 122

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
              E         NVE +  +++T+Y +  E++G +L+ + +GA+VL   HR   +R+  
Sbjct: 123 QANE-------DGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLA--HRERFERRKT 173

Query: 177 SKQLESN 183
            ++L + 
Sbjct: 174 QRELAAE 180


>gi|133900480|gb|ABO41406.1| NADH dehydrogenase subunit 6 [Kiggelaria africana]
          Length = 181

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 15/173 (8%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174


>gi|133900422|gb|ABO41377.1| NADH dehydrogenase subunit 6 [Clutia myricoides]
 gi|133900470|gb|ABO41401.1| NADH dehydrogenase subunit 6 [Humiria balsamifera]
          Length = 179

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|322422447|ref|YP_004221873.1| NADH dehydrogenase subunit 6 [Penicillium digitatum]
 gi|316891701|gb|ADU57309.1| NADH dehydrogenase subunit 6 [Penicillium digitatum]
          Length = 216

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 36/191 (18%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           ++I+   L ++ RNP+ SV  LI  FVN AGL +L+G  F+ +  ++VYVGAV + FLFI
Sbjct: 26  VSILLGILTISSRNPVVSVLFLIGLFVNVAGLLILVGYNFLGLAYILVYVGAVSILFLFI 85

Query: 74  IMMLDIDI-EVAEPRKKRGFLGSF----FIGILAAEL--------IVC-ASN-------- 111
           +M+++I + E+         L S     F  I+A  L        IVC  SN        
Sbjct: 86  LMLINIRVSELFNDTNNDLPLASLTIIIFYYIMAQVLPLNFTENSIVCYLSNSYSDIYNV 145

Query: 112 ------FMVFSAEGELSRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSM 157
                 F +   + ++S    KG         +V +IG ++YT Y+  L ++  ILLL M
Sbjct: 146 QLDNELFNIVDLKQQISYASSKGWDNSLIEPTHVASIGNIMYTSYSMWLIVTSIILLLGM 205

Query: 158 IGAIVLMLRHR 168
           +GAIV+ ++ +
Sbjct: 206 VGAIVITIKQK 216


>gi|145219894|ref|YP_001130603.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206058|gb|ABP37101.1| NADH dehydrogenase subunit J [Chlorobium phaeovibrioides DSM 265]
          Length = 173

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 15/151 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FYLF+ + + S+  VV  RN IYS FSL+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 7   TVIFYLFAAITVFSAAFVVFSRNVIYSAFSLLFTFFGIAALYVFLSADFIAVTQVVVYVG 66

Query: 65  AVIVFFLFIIM----MLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEG 119
            ++V  LF +M    ++D D++        G FL   F+GILAA L      F  ++  G
Sbjct: 67  GILVLLLFGVMFTNNIMDTDLKTDVLHAIPGTFL---FLGILAALL------FTFYTTNG 117

Query: 120 EL-SRLVFKGNNVENIGKVLYTQYAYPLEIS 149
            + S    +G+ VE IG    ++Y  P E++
Sbjct: 118 WMPSDTQLQGSVVERIGFETMSRYVLPFEMA 148


>gi|257852588|gb|ACV71306.1| NADH dehydrogenase subunit 6 [Mammea siamensis]
          Length = 178

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGLIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|257852722|gb|ACV71373.1| NADH dehydrogenase subunit 6 [Ruptiliocarpon caracolito]
          Length = 173

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 23/171 (13%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI---- 81
           +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I I    
Sbjct: 3   KNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIH 62

Query: 82  -EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            EV       G +G  F            I +L  +    +  + V++ +      V   
Sbjct: 63  EEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK------VRSW 116

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 117 TNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 167


>gi|133900514|gb|ABO41423.1| NADH dehydrogenase subunit 6 [Ochna multiflora]
          Length = 179

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRDISGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  +MV++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|15150748|ref|NP_150414.1| NADH dehydrogenase subunit 6 [Pylaiella littoralis]
 gi|15147754|emb|CAC50855.1| NADH dehydrogenase subunit 6 [Pylaiella littoralis]
          Length = 222

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 43/204 (21%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V + +NP+YS   L+  F   +G+  LLG EF+A++ L+VY GA+ V  LF++MMLDI  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDIK- 79

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNF------------MVFSAEGELSRLVFKGN 129
            +  P   +     F+ G L   ++ C   +               S   E    ++  N
Sbjct: 80  AIENPWSSKKISLVFYPGSL---VLFCCLGWSYNVKEIGFLPSFTLSLCKEKVESLYSSN 136

Query: 130 N-----------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---------- 168
           N           + +   +LY+ YA  L I+G ILL++M+GAI L L+ +          
Sbjct: 137 NMWFVEFDSSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAISLTLQKKSPESLYRQLG 196

Query: 169 RDIK------RQDISKQLESNPDN 186
           R+ K      ++ +S +L+ +PD 
Sbjct: 197 RESKHAVFSIKEKVSYRLDDDPDT 220


>gi|302559098|ref|ZP_07311440.1| NADH dehydrogenase I, J subunit [Streptomyces griseoflavus Tu4000]
 gi|302476716|gb|EFL39809.1| NADH dehydrogenase I, J subunit [Streptomyces griseoflavus Tu4000]
          Length = 280

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 99/199 (49%), Gaps = 20/199 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++   +A+I +   V +R  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 14  EAFQFWVLGTVAVIGALCTVFMRRAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVVYT 73

Query: 64  GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +       E  + ++    L     G+L    I  AS    F+  
Sbjct: 74  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGVLLVGGIGNAS-LSEFNGL 132

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           GE +     G NVE +  +L+T+Y +  EI+G +L+ + +GA+VL   HR   +R    +
Sbjct: 133 GEAN----AGGNVEGLAALLFTKYVFAFEITGALLITAAVGAMVLT--HRERTERARTQR 186

Query: 179 QLESNPDNSIVMVKVKSGK 197
           +L           +V+ GK
Sbjct: 187 ELAEQ--------RVREGK 197


>gi|282860728|ref|ZP_06269794.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           sp. ACTE]
 gi|282564464|gb|EFB70000.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           sp. ACTE]
          Length = 288

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 96/185 (51%), Gaps = 10/185 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F+L   +A+I +   V ++  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 16  EAVQFWLLGTVAVIGALSTVLMKKAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVYT 75

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +     + E  K + +L +      G+L   LI       + S  
Sbjct: 76  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLAAGCGLGFGVL---LIAGIGQASLRSYN 132

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  +     G NVE +  +++T+Y +  EI+G +L+ + +GA  ++L HR   +R    +
Sbjct: 133 GLGAANALHGGNVEGLANLIFTKYVFAFEITGALLITATVGA--MLLTHRERTERAKTQR 190

Query: 179 QLESN 183
           +L   
Sbjct: 191 ELSQE 195


>gi|229164239|ref|ZP_04292173.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           R309803]
 gi|228619261|gb|EEK76153.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           R309803]
          Length = 163

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVFKGNNVEN 133
           M+   + E       R ++  FF  +    ++  A N + FS +      L    NN   
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSTQSTTQGSLPLHENNTLQ 121

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           IG +LY++Y  P E++  ILL++++GAI+L    ++D K +D
Sbjct: 122 IGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 160


>gi|315587160|gb|ADU41541.1| NADH-ubiquinone oxidoreductase subunit J [Helicobacter pylori 35A]
          Length = 184

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 5   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 64

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +   
Sbjct: 65  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVAILLTLILSAPSIGENLSKQVNS 124

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N+E IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 125 NAIDAQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 183


>gi|133900488|gb|ABO41410.1| NADH dehydrogenase subunit 6 [Linum arboreum]
 gi|133900544|gb|ABO41438.1| NADH dehydrogenase subunit 6 [Reinwardtia indica]
          Length = 179

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|133900474|gb|ABO41403.1| NADH dehydrogenase subunit 6 [Hydnocarpus sp. Chase 1301]
          Length = 181

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 15/173 (8%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGGVKRQDIFRR 174


>gi|12408587|ref|NP_074916.1| NADH dehydrogenase subunit 6 [Podospora anserina]
 gi|400641|sp|P15959|NU6M_PODAN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|13304|emb|CAA32648.1| unnamed protein product [Podospora anserina]
 gi|14035|emb|CAA38769.1| NADH-ubiquinone oxidoreductase subunit 6 [Podospora anserina]
          Length = 221

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 36/196 (18%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +FS MA ++   V+  +NPI SV  LI  F   +    ++G  F+ +  ++VY+GAV + 
Sbjct: 25  IFSIMAFLTGIYVILTKNPIVSVLFLILLFGGISSYLNIIGLNFIGLSYIIVYIGAVSIL 84

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL--------IVCASNFM--VFSAEG 119
           FLFI+M+++I     +         + FIGI+ +          IV  SNF    FS + 
Sbjct: 85  FLFILMLINIRTSELQSNTSNSIPLTIFIGIIFSNFLFPMLPYDIVMLSNFYNNYFSEDF 144

Query: 120 E---------------------LSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFIL 153
                                 ++ +++ G     N++  IG ++YT Y   L I+ FIL
Sbjct: 145 YTIDVNINDNNLNNLYNNVLYFMTSVIWDGSVIDFNHITAIGNIMYTIYNIWLIIASFIL 204

Query: 154 LLSMIGAIVLMLRHRR 169
           LL+M+G+IV+ ++ R+
Sbjct: 205 LLAMVGSIVITIKQRK 220


>gi|257852672|gb|ACV71348.1| NADH dehydrogenase subunit 6 [Phyllanthus epiphyllanthus]
          Length = 170

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 86/164 (52%), Gaps = 11/164 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I I     
Sbjct: 1   NPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHE 60

Query: 87  RKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----NNVENIG 135
              R    S  IG IL  E+     N  +     +   + L   V+ G      N+E +G
Sbjct: 61  EVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLG 120

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 121 NLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 164


>gi|317178012|dbj|BAJ55801.1| NADH dehydrogenase subunit J [Helicobacter pylori F16]
          Length = 182

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 20/185 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-L 121
           GAVIV + F +M  +   EV E ++    L +   G+ L   LI+ A +       GE L
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVALLLTLILSAPSI------GENL 116

Query: 122 SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRR 169
           S+ V          N+E IG VL+T Y  P E +  +LL++M+G I   ++      H +
Sbjct: 117 SKQVNSNAIDVQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQ 176

Query: 170 DIKRQ 174
            IK  
Sbjct: 177 FIKES 181


>gi|308062553|gb|ADO04441.1| NADH dehydrogenase subunit J [Helicobacter pylori Cuz20]
          Length = 182

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 20/185 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-L 121
           GAVIV + F +M  +   EV E ++    L +   G+ L   LI+ A +       GE L
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSI------GENL 116

Query: 122 SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRR 169
           S  V          N+E IG VL+T Y  P E +  +LL++M+G I   ++      H +
Sbjct: 117 SEQVNSNAIDAQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQ 176

Query: 170 DIKRQ 174
            IK  
Sbjct: 177 FIKES 181


>gi|307328630|ref|ZP_07607803.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           violaceusniger Tu 4113]
 gi|306885742|gb|EFN16755.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           violaceusniger Tu 4113]
          Length = 303

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 104/203 (51%), Gaps = 24/203 (11%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++L F++   +A+I +   + +   ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 16  EALQFWVLGTVAVIGALCTILMHKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVVYT 75

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---ELIVCA----SNFMVFS 116
           GA+++ FLF++M++ +    A    K    G  ++  L      +++CA    ++   ++
Sbjct: 76  GAIMMLFLFVVMLVGV---TAADSLKETLKGQRWLAALCGLGFGILLCAGLGNASLTTWN 132

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             G+ +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R   
Sbjct: 133 GLGQAN----AGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQ- 187

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q E+         +V++G+ +
Sbjct: 188 REQAEA---------RVRTGRNV 201


>gi|310789318|gb|EFQ24851.1| NADH dehydrogenase subunit 6 [Glomerella graminicola M1.001]
          Length = 247

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 56/222 (25%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +AI+ + L +  +NPI SV  LI  F   +   +LLG  F+ +  L+VYVGAV + FL
Sbjct: 24  SILAILCAILTIVSKNPIVSVLFLIGLFGMVSSYLILLGLNFIGLSYLIVYVGAVSILFL 83

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL----------IVCASN---------- 111
           FI+M+++I +   +   K     + FI IL   L          I+  SN          
Sbjct: 84  FILMLINIRVSELQSNTKNSIPLALFITILFNYLIFQFLPYDLAILNNSNHSSALNNVLY 143

Query: 112 -------------FMVFSAEGELSRLV--------------FKGN-----NVENIGKVLY 139
                        F  F +  ++S +               + GN     ++ +IG +LY
Sbjct: 144 HTSFNGISDYNKIFNSFGSNSQISNVAKEGSSDLFFATSSSWDGNLIETSHISSIGNILY 203

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           T ++  L ++ FILLL+MIGAIV+ ++     K + IS  +E
Sbjct: 204 TSHSMWLILTSFILLLAMIGAIVITIKQ----KNKGISSMVE 241


>gi|290967673|ref|YP_003495101.1| NADH dehydrogenase subunit 6 [Trametes cingulata]
 gi|289832517|gb|ADD21053.1| NADH dehydrogenase subunit 6 [Trametes cingulata]
          Length = 203

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 34/202 (16%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++    L +F A+ SS LV+T +NP+ +V  LI  FVNAAG  +LLG  F+ +  ++VY
Sbjct: 1   MKNFLIELLAFAALFSSVLVITSKNPVIAVIFLISVFVNAAGYLILLGIGFIGISYIIVY 60

Query: 63  VGAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VGA+ V FLF+IMM++I   DI     +  +    +  IG L    I     F   +   
Sbjct: 61  VGAIAVLFLFVIMMINIKLTDILETGSQYTKNLPLALSIGSLFIYEIYTIIPFSFNNVSN 120

Query: 120 ELSRLVFKGN-------------------------------NVENIGKVLYTQYAYPLEI 148
            +  L+FK N                                +E IG+ LYT  A  L I
Sbjct: 121 TILDLLFKFNGFILNYEISINDWVNNAVNPVIADTALTPFLQIEAIGQGLYTYGASWLII 180

Query: 149 SGFILLLSMIGAIVLMLRHRRD 170
           +  ILLL+M+  I +    R +
Sbjct: 181 TSVILLLAMVAPIFISKTRRNN 202


>gi|262369341|ref|ZP_06062669.1| NADH dehydrogenase subunit I J [Acinetobacter johnsonii SH046]
 gi|262315409|gb|EEY96448.1| NADH dehydrogenase subunit I J [Acinetobacter johnsonii SH046]
          Length = 173

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 57/82 (69%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5  FYLMALVAIVSTIRVVTNANPVHALLSLIVSLLAVAGMFMIVGAPFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++     E  +K
Sbjct: 65 VLFVFVVMMLNLGQHTVEQERK 86


>gi|257852726|gb|ACV71375.1| NADH dehydrogenase subunit 6 [Hua gabonii]
          Length = 180

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTI-HRTTHGAVKRQDVFRR 174


>gi|145225069|ref|YP_001135747.1| NADH dehydrogenase subunit J [Mycobacterium gilvum PYR-GCK]
 gi|145217555|gb|ABP46959.1| NADH dehydrogenase subunit J [Mycobacterium gilvum PYR-GCK]
          Length = 236

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 95/182 (52%), Gaps = 16/182 (8%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F++ + +++  +  V+     +YS  SL    +  A L++  GA F+ ++ +VVY GA
Sbjct: 2   ILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYTGA 61

Query: 66  VIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAEL---IVCASNFMVFSAEG 119
           V++ FLF++MM+ +D     V   R +R       I  LA  L   I+  +     SA G
Sbjct: 62  VMMLFLFVLMMIGVDSSESLVETLRGQR-------IAALAVGLGFGILLIAGIGSVSATG 114

Query: 120 ELS-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +       G NVE +  +++T+Y +  E++G +L+ + +GA+VL   HR   +R+   +
Sbjct: 115 IVGLDQANGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLA--HRERFQRRKTQR 172

Query: 179 QL 180
           +L
Sbjct: 173 EL 174


>gi|239929605|ref|ZP_04686558.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672]
 gi|291437929|ref|ZP_06577319.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672]
 gi|291340824|gb|EFE67780.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672]
          Length = 283

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 99/203 (48%), Gaps = 28/203 (13%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V +R  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 14  EAVQFWVLGTIAVIGALCTVFMRRAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 73

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121
           GA+++ FLF++M++ +    A    K    G  ++ +L      C   F  ++ +  G  
Sbjct: 74  GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLALL------CGLGFGTLLITGIGHA 124

Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           S   F G        NVE I  +++T+Y +  EI+G +L+ + +GA+VL   HR   +R 
Sbjct: 125 SLGEFNGIGQANANGNVEGIASLIFTRYVFAFEITGILLITAAVGAMVLT--HRERTERA 182

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
              ++L           +V+ GK
Sbjct: 183 RTQRELAEQ--------RVREGK 197


>gi|89095639|ref|ZP_01168533.1| NADH dehydrogenase subunit J [Bacillus sp. NRRL B-14911]
 gi|89089385|gb|EAR68492.1| NADH dehydrogenase subunit J [Bacillus sp. NRRL B-14911]
          Length = 174

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 95/172 (55%), Gaps = 11/172 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F   +  A+    L++ +   ++ V +L+F F++ AG+++LL AEF+A++ +++Y GA
Sbjct: 8   LAFLGLAIAAVTGGILLINLEKVVHMVVALVFTFISIAGIYILLSAEFIAVVQVLIYSGA 67

Query: 66  VIVFFLFIIMMLDIDIEVAEP--RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           + +  LF IM+     E  +   R +R  L   F+ ILA    V    + +   E E   
Sbjct: 68  ITIIMLFGIMLTRHHDESGQKAGRLRRILL---FLAILAFAFSVYIGIYNLDFPEQE--- 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           ++   NN E IG  L++++  P E++  +LL++++GAIVL    R+D +  +
Sbjct: 122 VLLHENNTEQIGISLFSEFVIPFELTSVVLLVALVGAIVL---SRKDDEETE 170


>gi|169634173|ref|YP_001707909.1| NADH dehydrogenase I chain J [Acinetobacter baumannii SDF]
 gi|184157037|ref|YP_001845376.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
          baumannii ACICU]
 gi|239501286|ref|ZP_04660596.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
          baumannii AB900]
 gi|260551025|ref|ZP_05825230.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter sp.
          RUH2624]
 gi|260555658|ref|ZP_05827878.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter baumannii
          ATCC 19606]
 gi|262280138|ref|ZP_06057923.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter
          calcoaceticus RUH2202]
 gi|299771411|ref|YP_003733437.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
          sp. DR1]
 gi|332872612|ref|ZP_08440580.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
          6014059]
 gi|169152965|emb|CAP02011.1| NADH dehydrogenase I chain J [Acinetobacter baumannii]
 gi|183208631|gb|ACC56029.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
          baumannii ACICU]
 gi|193076542|gb|ABO11200.2| NADH dehydrogenase I chain J [Acinetobacter baumannii ATCC 17978]
 gi|260405973|gb|EEW99460.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter sp.
          RUH2624]
 gi|260410569|gb|EEX03867.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter baumannii
          ATCC 19606]
 gi|262260489|gb|EEY79222.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter
          calcoaceticus RUH2202]
 gi|298701499|gb|ADI92064.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
          sp. DR1]
 gi|332739141|gb|EGJ70000.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
          6014059]
          Length = 173

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 57/82 (69%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5  FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++     E  +K
Sbjct: 65 VLFVFVVMMLNLGQHTVEQERK 86


>gi|257852636|gb|ACV71330.1| NADH dehydrogenase subunit 6 [Triadenum walteri]
          Length = 178

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKNTAYLKYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    ++E +G +LYT Y     +   ILL++MIGAIVL +   + +KRQDI ++
Sbjct: 118 -VRSWTSLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKQVKRQDIFRR 172


>gi|133900532|gb|ABO41432.1| NADH dehydrogenase subunit 6 [Pogonophora schomburgkiana]
          Length = 179

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 92/170 (54%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+  I+   +  +   + + + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRKTTPLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172


>gi|153007184|ref|YP_001381509.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030757|gb|ABS28525.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. Fw109-5]
          Length = 170

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 91/152 (59%), Gaps = 10/152 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++F+   ++++  VV  RNP+Y+  +L+ AF   AG+++LL A  +A++ ++VY GAV+
Sbjct: 10  FWIFAIPLLLTAMGVVVARNPVYAAMNLVAAFFFMAGIYVLLAAHLIALMQILVYAGAVM 69

Query: 68  VFFLFIIMMLDIDIEVAEPR-----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           V FLF+IM+L    E  E       +  G +G+  + + A  ++V A   +  SA G L+
Sbjct: 70  VLFLFVIMLLSTGEEHRERERRRVMQYVGAIGA--VSLFA--VLVAAIARVPDSAMGALA 125

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           +   +   V+ +G+VLYT+Y  P E++  +LL
Sbjct: 126 Q-PDRFGTVKAVGQVLYTEYLLPFEVTSLLLL 156


>gi|257852742|gb|ACV71383.1| NADH dehydrogenase subunit 6 [Medusandra richardsiana]
          Length = 180

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y+    +S  ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTM-HRTTHGAVKRQDVFRR 174


>gi|215484511|ref|YP_002326746.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
          AB307-0294]
 gi|213988115|gb|ACJ58414.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
          AB307-0294]
          Length = 172

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 57/82 (69%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 4  FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 63

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++     E  +K
Sbjct: 64 VLFVFVVMMLNLGQHTVEQERK 85


>gi|133900476|gb|ABO41404.1| NADH dehydrogenase subunit 6 [Hypericum empetrifolium]
          Length = 179

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKNTAYLKYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    ++E +G +LYT Y     +   ILL++MIGAIVL +   + +KRQDI ++
Sbjct: 118 -VRSWTSLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKQVKRQDIFRR 172


>gi|325121089|gb|ADY80612.1| NADH dehydrogenase I chain J [Acinetobacter calcoaceticus PHEA-2]
          Length = 172

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 57/82 (69%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 4  FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 63

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++     E  +K
Sbjct: 64 VLFVFVVMMLNLGQHTVEQERK 85


>gi|169797050|ref|YP_001714843.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AYE]
 gi|213156544|ref|YP_002318205.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB0057]
 gi|301510621|ref|ZP_07235858.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB058]
 gi|301595906|ref|ZP_07240914.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB059]
 gi|332852139|ref|ZP_08433966.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
          6013150]
 gi|332867538|ref|ZP_08437691.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
          6013113]
 gi|169149977|emb|CAM87871.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AYE]
 gi|213055704|gb|ACJ40606.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB0057]
 gi|332729511|gb|EGJ60850.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
          6013150]
 gi|332733955|gb|EGJ65100.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
          6013113]
          Length = 173

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 57/82 (69%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5  FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++     E  +K
Sbjct: 65 VLFVFVVMMLNLGQHTVEQERK 86


>gi|294056105|ref|YP_003549763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615438|gb|ADE55593.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Coraliomargarita akajimensis DSM 45221]
          Length = 193

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 15/194 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+FS + ++S+ L+V   + +     +I AF+  A LF+LL A  +A + +VVY
Sbjct: 1   MLDILFYVFSAITLLSALLMVVSPSAVNGALCMIVAFLGTAALFVLLEAYLLAALQVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIG-----ILAAELIVCASNF---- 112
            GAV+V FLFIIM+LD+D    A   K +  LG+  +G     IL   L + +       
Sbjct: 61  AGAVMVLFLFIIMLLDVDKGAGASDMKDKVSLGAASMGFALVVILVTTLFIGSGQLPEPE 120

Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
               V +  G      F    +++ G  L+T+Y  P +++GF+LL  M+G IV+  +   
Sbjct: 121 LRDTVANPTGATGGFEFS-TAMKSFGYSLFTKYMLPFQVAGFLLLAGMVGVIVVSKKPSI 179

Query: 170 DIKRQDISKQLESN 183
           +++  D +   E +
Sbjct: 180 ELE-ADTADAGEGD 192


>gi|313681403|ref|YP_004059141.1| NADH dehydrogenase subunit j [Sulfuricurvum kujiense DSM 16994]
 gi|313154263|gb|ADR32941.1| NADH dehydrogenase subunit J [Sulfuricurvum kujiense DSM 16994]
          Length = 195

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 7/163 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLF+ + I+   + V     +Y++ ++    +  +  F +LGA+F+  I ++VY 
Sbjct: 3   EAIAFYLFAALTIVMFTITVMTSQALYAITAMAAGMIFISAFFFILGADFLGAIQIIVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+  + F +M  D   +V E R     +  F +G+LAA ++V    F+       +  
Sbjct: 63  GAVMALYAFGMMFFDTTRDVVEKRTNPQIV--FVLGVLAAVMVVAI--FVAPIVSNNIQA 118

Query: 124 LVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           L     N+ N   +G VL+T+Y  P E++  +LL++MIG I+L
Sbjct: 119 LYPIQENIGNSQAVGMVLFTKYLVPFEVAAVMLLVAMIGGIIL 161


>gi|257852628|gb|ACV71326.1| NADH dehydrogenase subunit 6 [Trigonostemon verrucosus]
          Length = 180

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 91/173 (52%), Gaps = 15/173 (8%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR---DIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGTVKRQDIFRR 174


>gi|257453975|ref|ZP_05619251.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Enhydrobacter aerosaccus SK60]
 gi|257448640|gb|EEV23607.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Enhydrobacter aerosaccus SK60]
          Length = 214

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 31/213 (14%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI++S  V+T  NP++++ ++I   +  +G+F  LGA F   + ++VY GA++
Sbjct: 9   FYLLAIVAILASLRVITRTNPVHALLNMIVTLLALSGIFFALGAPFAGALEIIVYAGAIM 68

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGS----------FFIGILAAELIVCASNFMVFSA 117
           V F+F++MML++  +     ++  +L S          F +G+    LI     F     
Sbjct: 69  VLFVFVVMMLNLGTQ--STLEEESWLSSSAWAVPAGLAFIVGLTLFSLIGMKHGF----- 121

Query: 118 EGELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           EG +   +  +    + IG  L+T+Y   +EI+GF+LL  ++ A  L  +   D + +  
Sbjct: 122 EGIMPAFIGVEPVTAKMIGAKLFTEYLLLVEIAGFLLLAGLVAAYHLA-KSALDDENESH 180

Query: 177 SKQL------------ESNPDNSIVMVKVKSGK 197
           + +L            +  P    V+ +V+  K
Sbjct: 181 NSELGNTVQPALTNFIDKEPSQPAVLREVQEEK 213


>gi|11467053|ref|NP_042529.1| NADH dehydrogenase, subunit 6 [Acanthamoeba castellanii]
 gi|6647619|sp|Q37371|NU6M_ACACA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|562034|gb|AAD11822.1| NADH dehydrogenase, subunit 6 [Acanthamoeba castellanii]
          Length = 260

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          +F F+A+  SF+++  +NPI+S+  LI  F N   + ++LG EF+A+I L+VYVGA+ V 
Sbjct: 9  IFCFLALFCSFMIIASKNPIHSILYLILVFCNVTFVLIILGVEFIAIIFLIVYVGAIAVL 68

Query: 70 FLFIIMMLDIDI 81
          FLF++MML+I I
Sbjct: 69 FLFVVMMLNIKI 80



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           A   L  L F+  N E +G ++YT   +   +   ILL+SMIG+I+L+L    +IKRQ I
Sbjct: 185 ASTNLLGLSFELTNTEILGWLVYTYTFFIFLVVSLILLISMIGSIILVLNQNINIKRQVI 244

Query: 177 SKQ 179
            +Q
Sbjct: 245 FRQ 247


>gi|319950460|ref|ZP_08024374.1| NADH:ubiquinone oxidoreductase subunit J [Dietzia cinnamea P4]
 gi|319435883|gb|EFV91089.1| NADH:ubiquinone oxidoreductase subunit J [Dietzia cinnamea P4]
          Length = 268

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 106/204 (51%), Gaps = 22/204 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +S+ F++ + +A+  +  VV     +YS   L    V+ A L++  GA F+ +  +VVY 
Sbjct: 6   ESVLFWILATVAVAGALGVVAAPRAVYSALCLAATMVSLAVLYMAQGAVFLGVGQIVVYT 65

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCAS--NFMVFS 116
           GAV+V FLF++M++ ++   +   + RG      L     G+L A     A    F  F+
Sbjct: 66  GAVMVLFLFVVMLIGVESSDSLVERIRGHRVAAILAGLGFGVLLATGFARAELPPFAGFA 125

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKR 173
           A          G+ V  + ++L++++ +  E++G +L+++ +GA+VL  R R   R  +R
Sbjct: 126 A---------GGSEVPALAELLFSRHVWAFELTGVLLIIATLGAMVLAHRERFTGRLTQR 176

Query: 174 QDISKQ--LESNPDNSIVMVKVKS 195
           Q +S+Q  L+   D+S  +  + S
Sbjct: 177 Q-LSEQRFLDWQRDDSARVTPLPS 199


>gi|257852652|gb|ACV71338.1| NADH dehydrogenase subunit 6 [Elvasia calophyllea]
          Length = 168

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 23/172 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  +MV++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQD 168


>gi|297159517|gb|ADI09229.1| NADH dehydrogenase subunit J [Streptomyces bingchenggensis BCW-1]
          Length = 312

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 101/190 (53%), Gaps = 17/190 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +A+I +   + +R  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 13  EAVQFWILATVAVIGALGTILMRKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVVYT 72

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---ELIVCA----SNFMVFS 116
           GA+++ FLF++M++ +    A    K    G  ++  L      +++CA    ++   F+
Sbjct: 73  GAIMMLFLFVVMLVGV---TAADSLKETLKGQRWLAALCGLGFGILLCAGIGNASLKSFN 129

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKR 173
             G+ +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +    +R
Sbjct: 130 GLGQAN----SGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALSQR 185

Query: 174 QDISKQLESN 183
           +   +++ + 
Sbjct: 186 EQAERRVRTG 195


>gi|328884321|emb|CCA57560.1| NADH-ubiquinone oxidoreductase chain J [Streptomyces venezuelae
           ATCC 10712]
          Length = 275

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 96/183 (52%), Gaps = 10/183 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++   +A+I +   + +R  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 14  EAFQFWVLGTVAVIGALCTILMRKAVHSALCLAGTMIILAVFYLANGAYFLGIVQIVVYT 73

Query: 64  GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +       E  + ++          GIL A  I  AS    F+  
Sbjct: 74  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWWAVACGLGFGILLAAGIGNAS-LKEFTGL 132

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDI 176
           G  +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R  R   ++++
Sbjct: 133 GAANSA--HGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERAATQREL 190

Query: 177 SKQ 179
           S+Q
Sbjct: 191 SEQ 193


>gi|225871977|ref|YP_002753431.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196]
 gi|225791616|gb|ACO31706.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196]
          Length = 172

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F +F    +  +  ++  R+PI S  SLI    + A L+LLLGAEF+A   ++VY
Sbjct: 1   MHLVLFIIFGAFCVAGAINLLLQRHPINSALSLIVVMTSLAVLYLLLGAEFLAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F F+IM+L+   E     +  G   ++++G   A  +     F+  S +  L 
Sbjct: 61  SGAIMVLFTFVIMLLNAGKE----ERTHGSRAAYWLGFPGAAALFALLTFIFLSHQPSLG 116

Query: 123 RLVFKGNNVEN--IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             V   + V    + +VL+     P E++  ++L++++GA+ L  RH  +
Sbjct: 117 YAVLGPDMVGTGELSQVLFRNLLLPFEVTSVLILIAILGAVALA-RHTNE 165


>gi|133900404|gb|ABO41368.1| NADH dehydrogenase subunit 6 [Calophyllum soulattri]
          Length = 178

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAI+L +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIILTMHRTTKVKRQDIFRR 172


>gi|206890416|ref|YP_002248753.1| NADH-ubiquinone oxidoreductase chain 6 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742354|gb|ACI21411.1| NADH-ubiquinone oxidoreductase chain 6 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 170

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 7/164 (4%)

Query: 8   FYLFSFMAI-ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FY++ F+++ I S  V+  +N I+S F L+   ++ A +FL L AEF+ +I ++VYVG V
Sbjct: 9   FYVYFFISLTILSIAVIASKNIIHSAFFLLIFLLHVAAIFLFLNAEFLMIIQIIVYVGGV 68

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +  F+F IM+++I     E R KR     F I  L    +  A  ++          ++ 
Sbjct: 69  LALFIFAIMIMNIK---EEFRHKR--FVKFSIAGLITGFLFLAGLYIFLGTVKSPENVLI 123

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           K ++V ++GK+LY+ Y  P EI   +LL++M+G I++  +   D
Sbjct: 124 K-SDVNSLGKLLYSYYFLPFEILSLVLLIAMVGGIIIAKKTPFD 166


>gi|164421194|ref|YP_001648691.1| NADH dehydrogenase subunit 6 [Vaceletia sp. GW948]
 gi|158939052|gb|ABW83971.1| NADH dehydrogenase subunit 6 [Vaceletia sp. GW948]
          Length = 171

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 62/86 (72%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          +L  YL S   ++S+ +V+  ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VYVG
Sbjct: 2  NLICYLLSVGTMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFLAFLLLLVYVG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKR 90
          A++V FLF++M+L ++ +  +  K +
Sbjct: 62 AIMVLFLFVLMILMLNEDEWQGEKSK 87


>gi|257852734|gb|ACV71379.1| NADH dehydrogenase subunit 6 [Heterostemon otophorus]
          Length = 178

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IYEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSIILLVAMIGAIVLTMHRTTKVKRQDVFRR 172


>gi|257852596|gb|ACV71310.1| NADH dehydrogenase subunit 6 [Aneulophus africanus]
          Length = 178

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQEIFRR 172


>gi|29831389|ref|NP_826023.1| NADH dehydrogenase subunit J [Streptomyces avermitilis MA-4680]
 gi|29608504|dbj|BAC72558.1| putative NADH dehydrogenase I chain J (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 280

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 28/203 (13%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++   +A+I +   V ++  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 14  EAFQFWILGTVAVIGALCTVLMKKAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVVYT 73

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121
           GA+++ FLF++M++ +    A    K    G  ++       +VC   F  ++F+  G  
Sbjct: 74  GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLA------LVCGLGFGTLLFAGIGNA 124

Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           S   F G        NVE +  +++T+Y +  EI+G +L+ + +GA+VL   HR   +R 
Sbjct: 125 SIKEFDGLGTANANGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLT--HRERTERA 182

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
              ++L           +V+ GK
Sbjct: 183 KTQRELSEQ--------RVREGK 197


>gi|226953544|ref|ZP_03824008.1| NADH dehydrogenase I subunit J [Acinetobacter sp. ATCC 27244]
 gi|226835722|gb|EEH68105.1| NADH dehydrogenase I subunit J [Acinetobacter sp. ATCC 27244]
          Length = 173

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 57/82 (69%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5  FYLMALVAIVSTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++  +  E   K
Sbjct: 65 VLFVFVVMMLNLGQDTVEQESK 86


>gi|294649468|ref|ZP_06726892.1| NADH-quinone oxidoreductase subunit J [Acinetobacter haemolyticus
          ATCC 19194]
 gi|292824638|gb|EFF83417.1| NADH-quinone oxidoreductase subunit J [Acinetobacter haemolyticus
          ATCC 19194]
          Length = 173

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 57/82 (69%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5  FYLMALVAIVSTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++  +  E   K
Sbjct: 65 VLFVFVVMMLNLGQDTVEQESK 86


>gi|237751589|ref|ZP_04582069.1| NADH oxidoreductase I [Helicobacter bilis ATCC 43879]
 gi|229372955|gb|EEO23346.1| NADH oxidoreductase I [Helicobacter bilis ATCC 43879]
          Length = 203

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 96/184 (52%), Gaps = 17/184 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY+F  + + +  +VV   N +Y++ +L F  +  +GLF LL A+F+ ++ ++VY 
Sbjct: 3   EAIAFYVFGALCLCAFLIVVMTNNILYALTALAFGMILVSGLFFLLNADFLGVVQIIVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+V + F +M+ D+  EV E R +  F+    + I A  L++   N          + 
Sbjct: 63  GAVVVMYAFGMMLFDVSKEVKE-RFQNQFMVWLLVSIFAIGLLIVVGN--------TQTT 113

Query: 124 LVFKGNNVEN-IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
           + ++ +N  N +  +L+  Y    E +  +LL++MI  I +   H+ +   +      ES
Sbjct: 114 IPYQNDNSTNALAHLLFKDYLVCFEAAAIMLLMAMIAGIGVG-SHKPEFTHE------ES 166

Query: 183 NPDN 186
           N D+
Sbjct: 167 NKDS 170


>gi|297380449|gb|ADI35336.1| NAD(P)H-quinone oxidoreductase chain 6 [Helicobacter pylori v225d]
          Length = 182

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 20/185 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-L 121
           GAVIV + F +M  +   EV E ++    L +   G+ L   LI+ A +       GE L
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSI------GENL 116

Query: 122 SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRR 169
           S+ V          N++ IG VL+T Y  P E +  +LL++M+G I   ++      H +
Sbjct: 117 SKQVNSNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQ 176

Query: 170 DIKRQ 174
            IK  
Sbjct: 177 FIKES 181


>gi|218509387|ref|ZP_03507265.1| hypothetical protein RetlB5_18674 [Rhizobium etli Brasil 5]
          Length = 118

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 42/50 (84%)

Query: 31  SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           SV  LI  F NAAGLFLLLGAEF+AMI LVVYVGAV V FLF++MMLDID
Sbjct: 57  SVLFLILVFFNAAGLFLLLGAEFLAMILLVVYVGAVAVLFLFVVMMLDID 106


>gi|298489903|ref|YP_003720080.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 ['Nostoc
           azollae' 0708]
 gi|298231821|gb|ADI62957.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ['Nostoc
           azollae' 0708]
          Length = 205

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F +   M I ++  VV   N +YS F L   F++ AGL+LLL  +FVA   +++YV
Sbjct: 8   QVISFGILGVMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQILIYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+ V  LF IM+++   + + P    G L      +++  L    S  +V +     S 
Sbjct: 68  GAINVLILFAIMLVNKRQDFS-PLPSAG-LRKIITSLVSIGLFGLLSTMVVATPWAYSSV 125

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQLE 181
            V   +++  IG+  +T +  P E++  +LL++M+GAI+L  R     ++   D+ + + 
Sbjct: 126 PVAGESSIVLIGEHFFTDFLLPFELASILLLMAMVGAIILARREYLPDEVPSSDMPQTIL 185

Query: 182 SNPDNSIVMVKVKSGKG 198
           + P+    +V   SG G
Sbjct: 186 TLPERPRELVSTGSGAG 202


>gi|282897415|ref|ZP_06305417.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Raphidiopsis
           brookii D9]
 gi|281198067|gb|EFA72961.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Raphidiopsis
           brookii D9]
          Length = 214

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 4/166 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +QS+ F +   M I ++  VV   N +YS F L   F++ AGL+LLL  +FVA   +++Y
Sbjct: 19  VQSVSFGILGAMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQVLIY 78

Query: 63  VGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGA+ V  LF IM+++   + A  P      L     G+++  L    S  ++ +  G  
Sbjct: 79  VGAINVLILFAIMLVNKRQDFAAIPSAG---LRKIVTGVVSLGLFALLSTMVLATPWGNT 135

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +      N+V  IG+ L++ +  P E++  +LL++M+GAI+L  R 
Sbjct: 136 TTPPATQNSVVVIGEHLFSDFLLPFELASILLLIAMVGAIILARRE 181


>gi|257852620|gb|ACV71322.1| NADH dehydrogenase subunit 6 [Ricinus communis]
          Length = 180

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDLFRR 174


>gi|133900484|gb|ABO41408.1| NADH dehydrogenase subunit 6 [Koilodepas bantamense]
          Length = 181

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDLFRR 174


>gi|308183379|ref|YP_003927506.1| NADH dehydrogenase subunit J [Helicobacter pylori PeCan4]
 gi|308065564|gb|ADO07456.1| NADH dehydrogenase subunit J [Helicobacter pylori PeCan4]
          Length = 182

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQSPKILCALSFGVAILLTLILSAPSIGENLSKQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|257459157|ref|ZP_05624276.1| NADH-quinone oxidoreductase, j subunit [Campylobacter gracilis
           RM3268]
 gi|257443542|gb|EEV18666.1| NADH-quinone oxidoreductase, j subunit [Campylobacter gracilis
           RM3268]
          Length = 175

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 11/183 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q+L FY FS + +    + V  +N +Y++ +L    V  +G F LL AEF+ ++ ++VY
Sbjct: 2   IQTLAFYFFSAVCLALFGISVFSKNVLYALSALAGGMVFMSGFFFLLDAEFLGVVQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAVIV + F +M L  D  V EP+K  R F      G++A  L++ A   +V  A    
Sbjct: 62  TGAVIVLYGFALMFLGADKNVNEPKKGARLFFA--LSGVIAFLLVIIALGAVV--ANNVE 117

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +  +   ++ E +G +++T+Y    E++  +LL++MI AIV  L H    K+ D S   E
Sbjct: 118 TLKILNTDDTEALGMIIFTKYLAIFELAAVMLLVAMICAIV--LAH----KQMDASLTYE 171

Query: 182 SNP 184
            + 
Sbjct: 172 ESE 174


>gi|164421164|ref|YP_001648648.1| NADH dehydrogenase subunit 6 [Hippospongia lachne]
 gi|158939006|gb|ABW83928.1| NADH dehydrogenase subunit 6 [Hippospongia lachne]
          Length = 169

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 62/88 (70%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M   F YL S   ++S+ +V+  ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VY
Sbjct: 1  MYLFFCYLLSVGIMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFIAFLLLLVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
          VGA++V FLF++M+L ++ +  +  K +
Sbjct: 61 VGAIMVLFLFVLMILMLNEDELQGEKSK 88


>gi|317182518|dbj|BAJ60302.1| NADH dehydrogenase subunit J [Helicobacter pylori F57]
          Length = 182

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 20/185 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L    V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASNMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-L 121
           GAVIV + F +M  +   EV E ++    L +   G+ L   LI+ A +       GE L
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVALLLTLILSAPSI------GENL 116

Query: 122 SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRR 169
           S+ V          N+E IG VL+T Y  P E +  +LL++M+G I   ++      H +
Sbjct: 117 SKQVNSNAIDVQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQ 176

Query: 170 DIKRQ 174
            IK  
Sbjct: 177 FIKES 181


>gi|109946836|ref|YP_664064.1| NADH dehydrogenase subunit J [Helicobacter acinonychis str. Sheeba]
 gi|109714057|emb|CAJ99065.1| NADH dehydrogenase I chain J [Helicobacter acinonychis str. Sheeba]
          Length = 182

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 95/179 (53%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVAVLLTLILSAPSIGENLSKQVNP 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  + +N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDVQISNIKAIGYVLFTDYLIPFEAAALMLLVAMVGGIATGIQKIHGKSHAQFIKES 181


>gi|158604903|gb|ABW74727.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Campylobacter
           concisus 13826]
          Length = 178

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 98/179 (54%), Gaps = 16/179 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +S  FYLFS + ++S    V  +N + +V +L    +  + +F LLGAEF+ ++ +VVY 
Sbjct: 3   ESFAFYLFSALILVSFSFSVLCKNALNAVSALAAGMIFISAIFFLLGAEFLGVVQIVVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG-----FLGSFFIGILAAELIVCASNFMVFSAE 118
           GAV+V + F +M  D   E  EP+  +      +L S FI +L   + +      ++SA+
Sbjct: 63  GAVVVLYAFAMMFFDTSKE-CEPKSGKKAKIIVYLLSSFIALLLIFIFLAP----IYSAK 117

Query: 119 GEL--SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            E+  S L   G N+E +G +L+++Y    E+   +LL++M+  I+L+    +D+  Q 
Sbjct: 118 QEVVNSTLANLG-NIEAVGILLFSKYLLAFEMCAIMLLVAMVAGIILI---HKDLDAQS 172


>gi|261839987|gb|ACX99752.1| NADH dehydrogenase subunit J [Helicobacter pylori 52]
 gi|317013057|gb|ADU83665.1| NADH dehydrogenase subunit J [Helicobacter pylori Lithuania75]
          Length = 182

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVAILLTLILSAPSIGENLSKQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|133900406|gb|ABO41369.1| NADH dehydrogenase subunit 6 [Carallia brachiata]
          Length = 179

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTYMRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|254416218|ref|ZP_05029972.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Microcoleus chthonoplastes PCC 7420]
 gi|196176900|gb|EDX71910.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Microcoleus chthonoplastes PCC 7420]
          Length = 208

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + S M I S+  VV + N +YS F L   F++ AG +LLL A+FVA   ++VYVGAV 
Sbjct: 12  FVILSVMMIGSALGVVLLNNIVYSAFLLGGVFISMAGFYLLLNADFVAAAQILVYVGAVN 71

Query: 68  VFFLFIIMMLDI--DIEVAEPRK-KRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSR 123
           V  LF IM+++   D +    R  ++G      +G+ A    +V  + + ++S    L  
Sbjct: 72  VLILFAIMLVNKREDFKPITNRWIRQGATALVCLGLFALLGTMVLVTPWSIYSGTAVLG- 130

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
              +G+ VE IGK  ++ +  P E++  +LL++M+GAI+L    RRD   + +  +  S 
Sbjct: 131 ---EGSVVE-IGKHFFSDFLLPFELASVLLLMAMVGAIIL---ARRDFIPESLVPRDTSE 183

Query: 184 PDNS 187
            + S
Sbjct: 184 TEYS 187


>gi|260436292|ref|ZP_05790262.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 8109]
 gi|260414166|gb|EEX07462.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 8109]
          Length = 199

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 21/177 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + S + +I +  VV + N +YS F L   F   AGL+LLL A FVAM  ++VYVGA+ 
Sbjct: 12  FLVLSAVVVIGALGVVLLSNIVYSAFLLGGVFTAVAGLYLLLNASFVAMAQILVYVGAIN 71

Query: 68  VFFLFIIMMLDI--DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V  LF IM+++   D++       R  + +           VC     +       +   
Sbjct: 72  VLILFAIMLVNKREDLKAIANLTTRRVVSAG----------VCVGLLALLVRVVVTTPWS 121

Query: 126 FKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             G           IG+ L+T Y  P E++  +LL++MIGAIVL    RRD+   D+
Sbjct: 122 LPGPAAVGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVL---ARRDVLATDV 175


>gi|257852658|gb|ACV71341.1| NADH dehydrogenase subunit 6 [Medusagyne oppositifolia]
          Length = 178

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|296274494|ref|YP_003657125.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098668|gb|ADG94618.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcobacter
           nitrofigilis DSM 7299]
          Length = 190

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLFS + I    + V   N +Y++ SL    +  +  F LL A+F+ ++ +VVY GAVI
Sbjct: 7   FYLFSILTIFMFGITVFTNNALYALSSLAAGMIFISAFFFLLNADFLGIVQIVVYTGAVI 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA------SNFMVFSAEGEL 121
             + F +M  D   EV E  +  G +  F    LAA + V A      SN ++  +E  +
Sbjct: 67  ALYAFGMMFFDSMSEVKEKIQNPGLV--FLFSGLAALITVVAFLSPIVSNNII--SEYAI 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ-- 179
                +  N +++G VL+T++  P EI+  +LL++MIG I+L  + + D+   ++S+   
Sbjct: 123 HP---EYGNTQDVGVVLFTKFLVPFEIAAVMLLVAMIGGIILAGK-KMDVSYSELSEDEI 178

Query: 180 --LESNPDNS 187
             LES+ +  
Sbjct: 179 DALESSNEKD 188


>gi|172037137|ref|YP_001803638.1| NADH dehydrogenase subunit J [Cyanothece sp. ATCC 51142]
 gi|171698591|gb|ACB51572.1| NADH dehydrogenase subunit 6 [Cyanothece sp. ATCC 51142]
          Length = 208

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 10/171 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + II++  VV + N +YS F L   F++ +G+++LL A+FVA   +++Y
Sbjct: 7   VQVISFAILAALVIIAALGVVLLENIVYSAFLLGGVFISISGIYVLLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAE-PRK--KRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VGAV V  LF IM+++   + +  P +  KRG       G+ A  L+        +S E 
Sbjct: 67  VGAVNVLILFAIMLVNKKQDYSNLPGRWIKRGATALVCGGLFA--LLATMVLITPWSLES 124

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
               L+   N V  IGK  ++ +  P E++  +LL++M+GAIVL    RRD
Sbjct: 125 NAPGLI--ENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVL---ARRD 170


>gi|330465211|ref|YP_004402954.1| NADH:ubiquinone oxidoreductase subunit J [Verrucosispora maris
           AB-18-032]
 gi|328808182|gb|AEB42354.1| NADH:ubiquinone oxidoreductase subunit J [Verrucosispora maris
           AB-18-032]
          Length = 256

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 102/203 (50%), Gaps = 14/203 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +A+  +  ++  RN ++S   L+   ++    ++L    F+ M+ ++VY 
Sbjct: 17  EAVTFWILAPLALAGAIGMIAARNAVHSALWLVLTMLSLGVFYVLQAGPFIGMVQIIVYT 76

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++  D     IEV   R +R  + +  +G+  A L+   +       E
Sbjct: 77  GAIMMLFLFVLMLVGRDASDSLIEVL--RGQR--IAAIGLGVGFAALLGSGAYRATQGTE 132

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                    G NV++I ++L+T Y +  E++  +L+ + IG ++L    RR   R+D   
Sbjct: 133 AVGLEQANAGGNVQSIARLLFTDYIFAFELTAALLITATIGGMILAHVERRKEDRRDQVA 192

Query: 179 QLESN--PDNSIVMVKVKSGKGI 199
            +++   P N       K G G+
Sbjct: 193 TMKARFAPGN---YPGPKPGPGV 212


>gi|108563638|ref|YP_627954.1| NADH dehydrogenase subunit J [Helicobacter pylori HPAG1]
 gi|107837411|gb|ABF85280.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori HPAG1]
          Length = 182

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVAILLTLILSAPSIGENLSNQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|257852718|gb|ACV71371.1| NADH dehydrogenase subunit 6 [Stackhousia minima]
          Length = 180

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDVFRR 174


>gi|118472606|ref|YP_886415.1| NADH dehydrogenase subunit J [Mycobacterium smegmatis str. MC2 155]
 gi|118173893|gb|ABK74789.1| NADH dehydrogenase subunit j [Mycobacterium smegmatis str. MC2 155]
          Length = 252

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 95/182 (52%), Gaps = 12/182 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A++ +  VV  R  +YS   L    ++ A L++   A F+ ++ +VVY 
Sbjct: 19  EAVVFWVVGTVALVGAIGVVAARKAVYSAVFLACTMISLAVLYIAQDAPFLGVVQIVVYT 78

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GAV++ FLF++M++ +D     +E  +  +    +     GIL   +I    N  V    
Sbjct: 79  GAVMMLFLFVLMLIGVDLTESLVETIKGHRIAALIAGAGFGIL---VIAGIGNVSVAGFS 135

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  +     G NVE +  +++T+Y +  E++  +L+ + +GA+VL   HR   +R+   +
Sbjct: 136 GLAA--ANSGGNVEGLAALIFTRYLWAFELTSALLITAALGAMVLA--HRERFERRKTQR 191

Query: 179 QL 180
           +L
Sbjct: 192 EL 193


>gi|322379667|ref|ZP_08053985.1| NADH dehydrogenase subunit J [Helicobacter suis HS5]
 gi|321147903|gb|EFX42485.1| NADH dehydrogenase subunit J [Helicobacter suis HS5]
          Length = 181

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F+ + +  + +VV+  N +Y++ +L  + V  +G F LLGAEF+ ++ ++VYVGAVI
Sbjct: 7   FYFFAILTLSMALIVVSTSNILYAMSALAASMVFISGFFFLLGAEFLGVVQILVYVGAVI 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           V + F +M  +   EV E   K      LG  F  +L   L   A N        E  ++
Sbjct: 67  VMYAFGMMFFNASEEVIERSHKPWLVYILGGVFALLLVVILGAPALNNYAHHLSAENLQI 126

Query: 125 V---FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           V       NV ++G  ++T+Y    E  G +LL ++IG I   LR     ++++
Sbjct: 127 VTPNLSTTNVHSMGYFVFTKYRIAFEAGGVMLLSALIGGITTALRKSYLSQKEN 180


>gi|89895328|ref|YP_518815.1| NADH dehydrogenase I chain J [Desulfitobacterium hafniense Y51]
 gi|89334776|dbj|BAE84371.1| NADH dehydrogenase I chain J [Desulfitobacterium hafniense Y51]
          Length = 163

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 92/160 (57%), Gaps = 10/160 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++F+ +A+ S++ VVT +N ++S F L  +F   A L++LL AE++A + L+VY GA+ 
Sbjct: 2   FFIFAIIAVASAWGVVTSKNIVHSAFFLALSFAGVAVLYVLLNAEYLAAVQLLVYAGAIS 61

Query: 68  VFFLFIIMM-LDIDIEVAEPRKKR---GFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           +  +F +M+ L  D+  + P  K+   G L S  + I+ A +I+  S++ +      L+ 
Sbjct: 62  IMVIFAVMLTLRGDVAESSPVTKKWTQGALVSALVFIVLALVILTNSDWRI------LAM 115

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
               G     + K+L + Y  P E +  ++ +++IGA+++
Sbjct: 116 PALAGGTTVELSKLLLSWYMVPFEAAAILITVALIGAVII 155


>gi|329935988|ref|ZP_08285788.1| NADH dehydrogenase subunit J [Streptomyces griseoaurantiacus M045]
 gi|329304466|gb|EGG48344.1| NADH dehydrogenase subunit J [Streptomyces griseoaurantiacus M045]
          Length = 284

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 99/187 (52%), Gaps = 20/187 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V +R  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 26  EAVQFWILGTVAVIGALCTVFMRRAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVYT 85

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121
           GA+++ FLF++M++ +    A    K    G  ++ +L      C   F  ++ +  G  
Sbjct: 86  GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLALL------CGLGFGVLLLAGIGNA 136

Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIK 172
           S   F G        NV+ +  +++T+Y +  EI+G +L+ + +GA+VL  R R  R + 
Sbjct: 137 SLTQFDGLSEANAPGNVQGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALT 196

Query: 173 RQDISKQ 179
           ++++S++
Sbjct: 197 QREMSER 203


>gi|284929387|ref|YP_003421909.1| NADH dehydrogenase subunit J [cyanobacterium UCYN-A]
 gi|284809831|gb|ADB95528.1| NADH dehydrogenase subunit J [cyanobacterium UCYN-A]
          Length = 207

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 23/191 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + IIS+  VV + N +YS F L   F+  +GL++LL A+F+A   +++Y
Sbjct: 7   VQLVSFAILAGLVIISALGVVLLSNIVYSAFLLGGVFIGISGLYILLNADFIAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF IM+++   + +   K        +I  +A  ++VC   F + S    ++
Sbjct: 67  VGAINVLILFAIMLVNKKGDYSNSSKS-------WINRVAT-MMVCGGIFALLSTVVYMT 118

Query: 123 RLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI---- 171
               +        + V  IG+ L++ Y  P E++  +LL++M+GAIVL    RRD+    
Sbjct: 119 PWNVEAVVPEVLESTVIKIGRHLFSDYLLPFELASVLLLIAMVGAIVL---ARRDLIPEI 175

Query: 172 -KRQDISKQLE 181
              + IS  LE
Sbjct: 176 YDSEGISTALE 186


>gi|254431361|ref|ZP_05045064.1| NAD(P)H-quinone oxidoreductase chain 6 [Cyanobium sp. PCC 7001]
 gi|197625814|gb|EDY38373.1| NAD(P)H-quinone oxidoreductase chain 6 [Cyanobium sp. PCC 7001]
          Length = 200

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 11/178 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F   S   ++ +  VV + N +YS F L   F++ AGL+L+L A FVA   ++VYV
Sbjct: 8   QFICFAALSATLVLGALGVVLLPNIVYSAFLLAGVFLSVAGLYLMLNASFVAAAQILVYV 67

Query: 64  GAVIVFFLFIIMMLDI--DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV V  LF IM+++   D+ V +    R  L     G L   LI  A      +    L
Sbjct: 68  GAVNVLILFAIMLVNKREDLSVIKGLALRRALSGLVCGGLFVLLIRVA-----VTTPWAL 122

Query: 122 SRLVFKGNNVE-NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                 G      IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+   DI+ 
Sbjct: 123 PGPTPVGEEATIRIGEHLFSDYLLPFELASVLLLMAMIGAIVL---ARRDVFSADIAT 177


>gi|256785932|ref|ZP_05524363.1| NADH dehydrogenase subunit J [Streptomyces lividans TK24]
 gi|289769825|ref|ZP_06529203.1| NuoJ [Streptomyces lividans TK24]
 gi|289700024|gb|EFD67453.1| NuoJ [Streptomyces lividans TK24]
          Length = 285

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 98/183 (53%), Gaps = 12/183 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V ++  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 19  EAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 78

Query: 64  GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +       E  + ++    L     GIL   LI    N  V    
Sbjct: 79  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGIL---LIAGIGNASVSEFT 135

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDI 176
           G L++    G NVE I  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R  +++
Sbjct: 136 G-LAQANANG-NVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQREL 193

Query: 177 SKQ 179
           S+Q
Sbjct: 194 SEQ 196


>gi|125213990|dbj|BAF46418.1| NADH dehydrogenase subunit 6 [Rhodotorula glutinis]
          Length = 222

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 8/103 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++   L +  AI+S  +V+T +NP+ SV  LI  F+N AG  +LLG  ++ ++ L+VY
Sbjct: 1   MNNVLLDLLALGAILSGIMVITAKNPVISVLFLIAVFLNVAGYLVLLGVAYLGLVYLIVY 60

Query: 63  VGAVIVFFLFIIMMLDID----IEVAEPRKKR----GFLGSFF 97
           VGA+ + FLF+IMML++     +E  +   K      FLGS F
Sbjct: 61  VGAIAILFLFVIMMLNLRLVELVETGQEYTKSLPMGAFLGSLF 103


>gi|124024376|ref|YP_001018683.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9303]
 gi|123964662|gb|ABM79418.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9303]
          Length = 200

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 21/160 (13%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI--DIEVA 84
           N +YS F L   F+  AGL+LLL A FVA   ++VYVGAV V  LF IM+++   D++  
Sbjct: 31  NIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLVYVGAVNVLILFAIMLVNKREDLKPI 90

Query: 85  EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------NNVENIGKVL 138
           E    R  L             VCA  F++F      +     G         E IG+ L
Sbjct: 91  EGLPIRRLLSGG----------VCAGLFVLFFRVVITTPWAVPGPAAIGVGATERIGEHL 140

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +T Y  P E++  +LL++MIGAIVL    RRD+   D+  
Sbjct: 141 FTDYLLPFELASVLLLMAMIGAIVL---ARRDVLETDVGT 177


>gi|33864283|ref|NP_895843.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9313]
 gi|33641063|emb|CAE22192.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9313]
          Length = 200

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 21/160 (13%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI--DIEVA 84
           N +YS F L   F+  AGL+LLL A FVA   ++VYVGAV V  LF IM+++   D++  
Sbjct: 31  NIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLVYVGAVNVLILFAIMLVNKREDLKPI 90

Query: 85  EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------NNVENIGKVL 138
           E    R  L             VCA  F++F      +     G         E IG+ L
Sbjct: 91  EGLPIRRLLSGG----------VCAGLFVLFFRVVITTPWAVPGPAAIGVGATERIGEHL 140

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +T Y  P E++  +LL++MIGAIVL    RRD+   D+  
Sbjct: 141 FTDYLLPFELASVLLLMAMIGAIVL---ARRDVLETDVGT 177


>gi|229099727|ref|ZP_04230653.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-29]
 gi|228683697|gb|EEL37649.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-29]
          Length = 153

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F IM+   + E      
Sbjct: 8   MHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGIMLTKHNAENESRLT 67

Query: 89  KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
            R ++  FF  +    ++  A N + FS E     L     N   IG +LY++Y  P E+
Sbjct: 68  LRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQIGTLLYSEYIIPFEL 126

Query: 149 SGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +  ILL++++GAI+L    ++D K +D
Sbjct: 127 TSVILLVALVGAIILA---KKDEKEED 150


>gi|217033590|ref|ZP_03439018.1| hypothetical protein HP9810_899g26 [Helicobacter pylori 98-10]
 gi|216943936|gb|EEC23370.1| hypothetical protein HP9810_899g26 [Helicobacter pylori 98-10]
 gi|261838592|gb|ACX98358.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 51]
 gi|317178437|dbj|BAJ56225.1| NADH dehydrogenase subunit J [Helicobacter pylori F30]
          Length = 182

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVAILLTLILSAPSIGENLSKQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|257852600|gb|ACV71312.1| NADH dehydrogenase subunit 6 [Codiaeum variegatum]
          Length = 180

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 25/178 (14%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI+    F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDLFRR 174


>gi|119356795|ref|YP_911439.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354144|gb|ABL65015.1| NADH dehydrogenase subunit J [Chlorobium phaeobacteroides DSM 266]
          Length = 172

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 11/160 (6%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FYLF+ + + S+  VV  R+ IYS FSL+F F   A L++LL A+F+A+  +VVYVG
Sbjct: 7   TIIFYLFAAITVFSAAFVVFSRSVIYSAFSLLFTFFGTAALYVLLSADFIAVTQVVVYVG 66

Query: 65  AVIVFFLFIIM----MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            ++V  LF +M    ++  D++        G L   F  I    L V  +     +   +
Sbjct: 67  GILVLLLFGVMFTNSIMQTDLKTDVLHVVPGTL--LFAAITGGMLYVFYT-----TGTWK 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
            S +  +G+ VE IG    ++Y  P E++  +LL  +IGA
Sbjct: 120 SSLVTLQGSVVERIGYETMSRYILPFEMASILLLAVLIGA 159


>gi|296040757|gb|ADG85346.1| NADH dehydrogenase subunit 6 [Silene vulgaris]
          Length = 157

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 23/163 (14%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA+ V FLF+
Sbjct: 1   LALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60

Query: 74  IMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFS 116
           +MM  I I     EV       G +G  F            I +L  +    +  + V++
Sbjct: 61  VMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYA 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
            +      V    N+E +G +LYT Y     +S  ILL++MIG
Sbjct: 121 GK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIG 157


>gi|257852696|gb|ACV71360.1| NADH dehydrogenase subunit 6 [Fusispermum laxiflorum]
          Length = 180

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 88/178 (49%), Gaps = 25/178 (14%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128
           I        R    S  IG     LI     F +   E             L   V+ G 
Sbjct: 63  IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
                N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174


>gi|282900718|ref|ZP_06308660.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194518|gb|EFA69473.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Cylindrospermopsis raciborskii CS-505]
          Length = 202

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 18/203 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           QS+ F +   M I ++  VV   N +YS F L   F++ AGL+LLL  +FVA   +++YV
Sbjct: 8   QSVSFGILGAMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQVLIYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-------LGSFFIGILAAELIVCASNFMVFS 116
           GA+ V  LF IM+++         K++ F       L     G+++  L    S  ++ +
Sbjct: 68  GAINVLILFAIMLVN---------KRQDFAVIPSAGLRKIVTGVVSLGLFALLSAMVLAT 118

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQ 174
             G  +      N+V  IG+ L++ +  P E++  +LL++M+GAI+L  R      +   
Sbjct: 119 PWGNTTTPPATQNSVVVIGEHLFSDFLLPFELASILLLIAMVGAIILARREYLPDQVTPS 178

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
           ++ + + + P+    +V     +
Sbjct: 179 ELPQTILTLPERPRELVSTTGNQ 201


>gi|229032925|ref|ZP_04188880.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1271]
 gi|228728470|gb|EEL79491.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1271]
          Length = 162

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTQHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|21222954|ref|NP_628733.1| NADH dehydrogenase subunit J [Streptomyces coelicolor A3(2)]
 gi|5042268|emb|CAB44522.1| NuoJ, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
          Length = 285

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 98/183 (53%), Gaps = 12/183 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V ++  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 19  EAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 78

Query: 64  GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +       E  + ++    L     GIL   LI    N  V    
Sbjct: 79  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGIL---LIAGIGNASVSEFT 135

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDI 176
           G L++    G NVE I  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R  +++
Sbjct: 136 G-LAQANANG-NVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQREL 193

Query: 177 SKQ 179
           S+Q
Sbjct: 194 SEQ 196


>gi|133900452|gb|ABO41392.1| NADH dehydrogenase subunit 6 [Euphronia guianensis]
          Length = 181

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174


>gi|188528058|ref|YP_001910745.1| NADH dehydrogenase subunit J [Helicobacter pylori Shi470]
 gi|188144298|gb|ACD48715.1| NADH dehydrogenase subunit J [Helicobacter pylori Shi470]
          Length = 182

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 95/179 (53%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNF-MVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L +   G+ L   LI+ A +     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSIGENLSNQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDVQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|229076507|ref|ZP_04209469.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock4-18]
 gi|228706693|gb|EEL58904.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock4-18]
          Length = 153

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F IM+   + E      
Sbjct: 8   MHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGIMLTKHNAENESRLT 67

Query: 89  KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
            R ++  FF  +    ++  A N + FS E     L     N   IG +LY++Y  P E+
Sbjct: 68  LRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQIGTLLYSKYIIPFEL 126

Query: 149 SGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +  ILL++++GAI+L    ++D K +D
Sbjct: 127 TSVILLVALVGAIILA---KKDEKEED 150


>gi|21673602|ref|NP_661667.1| NADH dehydrogenase I, subunit 6 [Chlorobium tepidum TLS]
 gi|21646716|gb|AAM72009.1| NADH dehydrogenase I, subunit 6 [Chlorobium tepidum TLS]
          Length = 173

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 6/172 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FY+F+ + ++S+  VV  +N IYS FSL+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 7   AIIFYIFAAVTVLSAAFVVFSKNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SR 123
            ++V  LF +M  +    +     K   L +   GIL   L++    F  ++    +   
Sbjct: 67  GILVLLLFGVMFTN---TIMSTELKADVL-NVVPGILLTLLLIVGMLFTFYTTGSWMPGE 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   G+ V++IG    ++Y  P E+   +LL++++GA  L  R+ +  K++ 
Sbjct: 123 MQLNGSVVQSIGLETMSRYMLPFEMFSIVLLVALLGAAYLA-RYDKANKKEH 173


>gi|317180995|dbj|BAJ58781.1| NADH dehydrogenase subunit J [Helicobacter pylori F32]
          Length = 182

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVAILLTLILSAPSIGENLSNQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|152990047|ref|YP_001355769.1| NADH dehydrogenase subunit J [Nitratiruptor sp. SB155-2]
 gi|151421908|dbj|BAF69412.1| NADH-quinone oxidoreductase, chain J [Nitratiruptor sp. SB155-2]
          Length = 184

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLF+ + I    + V  +N +YS+ +L    V  +  F LL A+F+ ++ ++VY 
Sbjct: 3   EAIAFYLFAALTIFMFAVTVMSKNALYSMSALAAGMVFISAFFFLLDADFLGVVQIIVYG 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAE--PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV+  + F +M +D   +V E  P KK  F   F  G++A  L++     +V      L
Sbjct: 63  GAVMALYAFAMMFMDTTKDVKEKNPSKKIVF---FLSGMVALLLVIILLTPIVSDKVQAL 119

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             +  +  N E +G VL+T+Y  P E++  +LL++MI  I+L  +   +     I +++E
Sbjct: 120 YPVSDEVGNAEAVGIVLFTKYLVPFELAAVMLLVAMIAGIILASKRMDESITLKIDQEIE 179

Query: 182 SN 183
             
Sbjct: 180 EK 181


>gi|133900540|gb|ABO41436.1| NADH dehydrogenase subunit 6 [Quiina pteridophylla]
          Length = 179

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F   +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|332674072|gb|AEE70889.1| NADH-ubiquinone oxidoreductase [Helicobacter pylori 83]
          Length = 184

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 5   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 64

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +   
Sbjct: 65  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVAILLTLILSAPSIGENLSNQVNS 124

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 125 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 183


>gi|257852626|gb|ACV71325.1| NADH dehydrogenase subunit 6 [Tetrorchidium cf. macrophyllum Bell
           et al. 93-204]
          Length = 180

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 88/172 (51%), Gaps = 13/172 (7%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRLVFK--------GN 129
           I        R    S  IG IL  E+     N  +     +   + L +K          
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTASLRYKVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHSPTHGAVKRQDLFRR 174


>gi|296040755|gb|ADG85345.1| NADH dehydrogenase subunit 6 [Silene paradoxa]
          Length = 157

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 82/160 (51%), Gaps = 17/160 (10%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA+ V FLF+
Sbjct: 1   LALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60

Query: 74  IMMLDIDI-----EVAEPRKKRGFLGSFFIG----ILAAELIVCASNFMVFSAEGELSRL 124
           +MM  I I     EV       G +G  F      IL  E I              L   
Sbjct: 61  VMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPT---HRNTTSLRYT 117

Query: 125 VFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
           V+ G      N+E +G +LYT Y     +S  ILL++MIG
Sbjct: 118 VYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIG 157


>gi|257852676|gb|ACV71350.1| NADH dehydrogenase subunit 6 [Froesia diffusa]
          Length = 178

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F   +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|308064047|gb|ADO05934.1| NADH dehydrogenase subunit J [Helicobacter pylori Sat464]
          Length = 182

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 20/185 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-L 121
           GAVIV + F +M  +   EV E ++    L +   G+ L   LI+ A +       GE L
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSI------GENL 116

Query: 122 SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRR 169
           S  V          N++ IG VL+T Y  P E +  +LL++M+G I   ++      H +
Sbjct: 117 SNQVNSNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQ 176

Query: 170 DIKRQ 174
            IK  
Sbjct: 177 FIKES 181


>gi|299737838|ref|XP_002910006.1| NADH dehydrogenase subunit 6 [Coprinopsis cinerea okayama7#130]
 gi|298402998|gb|EFI26512.1| NADH dehydrogenase subunit 6 [Coprinopsis cinerea okayama7#130]
          Length = 250

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 58/82 (70%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M +++LF  L +F  ++SS L +T +NP+ SV  LI  FV+AAG  +L+G +F+ +  +V
Sbjct: 1  MNIKTLFINLLAFGTLLSSILTITAKNPVISVIFLISTFVSAAGYLILIGIQFLGLSYIV 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIE 82
          +YVGA+ V FLF+IMM++I + 
Sbjct: 61 IYVGAIAVLFLFVIMMINIKLT 82


>gi|257852678|gb|ACV71351.1| NADH dehydrogenase subunit 6 [Touroulia guianensis]
          Length = 178

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +VV  +NP++SV   I  F   +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|218245873|ref|YP_002371244.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 8801]
 gi|257058921|ref|YP_003136809.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 8802]
 gi|218166351|gb|ACK65088.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 8801]
 gi|256589087|gb|ACU99973.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 8802]
          Length = 206

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 101/182 (55%), Gaps = 14/182 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + S + I ++  VV + N +YS F L   F++ +G+++LL A+FVA   +++Y
Sbjct: 7   VQIVSFAILSVLVIAAALGVVLLSNIVYSAFLLGGVFISISGIYILLNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAE-PRK--KRGFLGSFFIG--ILAAELIVCASNFMVFSA 117
           VGAV V  LF IM+++   + +  PR+  ++G      +G  IL + +I+     +  ++
Sbjct: 67  VGAVNVLILFGIMLVNKQEDFSTLPRRWIRQGATALVCVGIFILLSTMILVTPWSISTTS 126

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            G +       N +  +GK  ++ +  P E++  +LL++M+GAI+L    RRD+    + 
Sbjct: 127 PGVIE------NTIIELGKHFFSDFLLPFELASVLLLMAMVGAIIL---ARRDLIPDTLP 177

Query: 178 KQ 179
            Q
Sbjct: 178 TQ 179


>gi|206890506|ref|YP_002248944.1| NADH-quinone oxidoreductase chain j [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742444|gb|ACI21501.1| NADH-quinone oxidoreductase chain j [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 171

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 14/174 (8%)

Query: 6   LFFYLFSFMAIIS---SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +++F++  + +   S + +T +NP+++V  L+  F++ A ++L L AEF+AM+ ++VY
Sbjct: 1   MIYFIFAYFCLATLGISIMSLTRKNPVHAVLWLLLLFLHVAVIYLFLNAEFLAMVQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-EGEL 121
            GA++V FLF + +L        P+ KR    S   G L   L + A+   VFS+ + E 
Sbjct: 61  AGAILVMFLFTLFLLGAR---QLPKHKR--YTSILEGRLLIGLSITATLLAVFSSIKAEY 115

Query: 122 S-----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           S     + V    N + IG +L+ +Y+  + I G ILL+ MI   VL  R + D
Sbjct: 116 SGKYTIKYVHDVGNTKAIGAMLFNEYSLAVLILGVILLIPMIAVSVLAWRRKDD 169


>gi|163781780|ref|ZP_02176780.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883000|gb|EDP76504.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
          Length = 159

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 94/165 (56%), Gaps = 13/165 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++  L F+L +     S    V V++P++S+   + A +  AG+FL LGAE +A + L+
Sbjct: 1   MILGVLGFWLLA-----SVLGAVLVKSPVHSILFFLSAVLAMAGIFLSLGAELLAGLQLI 55

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE- 118
           +Y  A++VF++ +I  +  + ++  E   +R FL    +G+    ++     +MV   + 
Sbjct: 56  IYAVAIVVFYVLVITTIPWEKVKRFEGVYRREFL----MGLPVVLVVFALMGYMVLKGKL 111

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            + S  V   +NV  +GK L+T Y +P E++  ILL++MIGAI+L
Sbjct: 112 AQPSEAV--QDNVRELGKTLFTSYLFPFEVASVILLVAMIGAILL 154


>gi|210135428|ref|YP_002301867.1| NADH dehydrogenase subunit J [Helicobacter pylori P12]
 gi|210133396|gb|ACJ08387.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori P12]
          Length = 182

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQNPKILCVLSFGVALLLTLILSAPSIGENLSKQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|16332084|ref|NP_442812.1| NADH dehydrogenase subunit J [Synechocystis sp. PCC 6803]
 gi|2506948|sp|P26523|NU6C_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName:
           Full=NAD(P)H dehydrogenase I, chain 6; AltName:
           Full=NDH-1, chain 6
 gi|1001393|dbj|BAA10883.1| NADH dehydrogenase subunit 6 [Synechocystis sp. PCC 6803]
          Length = 198

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 23/178 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + +F+ I ++  VV + N +YS F L   F++ +G+++LL A+FVA   ++VY
Sbjct: 7   VQYISFLILAFLVIGAALGVVLLSNIVYSAFLLGGVFLSISGIYILLNADFVAAAQVLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNF-----MV 114
           VGAV V  LF IM+++         K+  F    G +   +  A  +VC   F     MV
Sbjct: 67  VGAVSVLILFAIMLVN---------KREDFSKIPGRWLRNVSTA--LVCTGIFALLSTMV 115

Query: 115 FSAEGELSRL-VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                +++    F  N +  IGK  ++ Y  P E++  +LL++M+GAI+L    RRD+
Sbjct: 116 LITPWQINETGPFVENTLVTIGKHFFSDYLLPFELASVLLLMAMVGAIIL---ARRDL 170


>gi|302553435|ref|ZP_07305777.1| NADH dehydrogenase subunit J [Streptomyces viridochromogenes DSM
           40736]
 gi|302471053|gb|EFL34146.1| NADH dehydrogenase subunit J [Streptomyces viridochromogenes DSM
           40736]
          Length = 280

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 100/203 (49%), Gaps = 28/203 (13%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   + ++  ++S   L    +  A  +L  GA F+ ++ ++VY 
Sbjct: 14  EAVQFWILGTVAVIGALGTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVVQIIVYT 73

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121
           GA+++ FLF++M++ +    A    K    G  ++ +L      C   F  ++F+  G  
Sbjct: 74  GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLALL------CGLGFGILLFAGIGNA 124

Query: 122 SRLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           S   F        G NV+ I  +L+T+Y +  EI+G +L+ + +GA+VL   HR   +R 
Sbjct: 125 SLKEFNGIGQANAGGNVQGIAALLFTRYVFAFEITGALLITAAVGAMVLT--HRERTERA 182

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
              ++L           +V+ GK
Sbjct: 183 KTQRELAEE--------RVREGK 197


>gi|133900428|gb|ABO41380.1| NADH dehydrogenase subunit 6 [Denhamia celastroides]
          Length = 181

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTKRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDVFRR 174


>gi|24080118|ref|NP_705909.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var.
          grubii]
 gi|22536162|gb|AAN01231.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var.
          neoformans]
 gi|23630297|gb|AAN37587.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var.
          grubii]
          Length = 202

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 53/80 (66%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M +    L +F A++S  LV+T  NP+ SV  LI  FVNAAG  +LLG  FV +  L+VY
Sbjct: 1  MNTFLLDLLAFGAVLSGVLVITSVNPVISVLFLISVFVNAAGYLVLLGVGFVGISYLIVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIE 82
          VGA+ + FLF++MML+I I 
Sbjct: 61 VGAIAILFLFVVMMLNISIT 80


>gi|296268282|ref|YP_003650914.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Thermobispora bispora DSM 43833]
 gi|296091069|gb|ADG87021.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobispora
           bispora DSM 43833]
          Length = 296

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 105/184 (57%), Gaps = 14/184 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +S+ F++ + ++++++F +V  R  +YS   L    ++ A L+ +  A F+A + ++VY 
Sbjct: 3   ESITFWVLAVVSVLAAFGLVLSRKAVYSALMLGVVMLSLAVLYAVQDAPFLAAVQIIVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVA--EPRKKRGFL----GSFFIGILAAELIVCASNFMVFSA 117
           GAV++ FLF++M++ +D   +  E  K + F     G  F+ +L     +   N  V +A
Sbjct: 63  GAVMMLFLFVLMLIGVDTSDSLVETIKGQRFWAIVAGLGFVALLG----LAVGNVAVSAA 118

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK--RQD 175
            G       K +NV ++ ++++T++ +  E++  +L+ + +GA+VL  R RR  K  ++D
Sbjct: 119 TGLGEE--GKASNVLSLAELIFTRHVFAFEVTSALLITAALGAMVLAHRERRTPKPTQKD 176

Query: 176 ISKQ 179
           +S++
Sbjct: 177 LSRR 180


>gi|297192778|ref|ZP_06910176.1| NADH dehydrogenase subunit J [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721033|gb|EDY64941.1| NADH dehydrogenase subunit J [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 279

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 101/199 (50%), Gaps = 18/199 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   + ++  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 13  EAVQFWVLGTIAVIGALCTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVVYT 72

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +     + E  K + +L +      GIL   LI    N  + +  
Sbjct: 73  GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGIL---LIAGIGNASLKNFN 129

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL   HR   +R    +
Sbjct: 130 GLGAANSAHGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLT--HRERTERAKTQR 187

Query: 179 QLESNPDNSIVMVKVKSGK 197
           +L           +V+ GK
Sbjct: 188 ELSEQ--------RVREGK 198


>gi|268678789|ref|YP_003303220.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616820|gb|ACZ11185.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 184

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 94/168 (55%), Gaps = 3/168 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY+FS + +    +VV  +N +Y++ +L    +  +G F +L AEF+ ++ +VVY 
Sbjct: 3   ETVAFYIFSILTLGMFGIVVMSKNALYAMSALAGGMIFISGFFFILDAEFLGVVQIVVYS 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA++  + F +M  D   +V+E  + +    ++ + I++A LIV      + S   E S 
Sbjct: 63  GAIMALYAFGMMFFDTTRDVSEKMRSKKI--AYTLSIVSAVLIVAILCMPLVSESIEASY 120

Query: 124 LVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              +   N++ +G +L+T+Y  P E++  +LL++MI  IVL  +   +
Sbjct: 121 PAIENVGNIQMVGLILFTKYLVPFELAAIMLLVAMISGIVLASKKMDE 168


>gi|15612255|ref|NP_223908.1| NADH dehydrogenase subunit J [Helicobacter pylori J99]
 gi|4155780|gb|AAD06756.1| NADH oxidoreductase I [Helicobacter pylori J99]
          Length = 182

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|301347607|ref|ZP_07228348.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB056]
          Length = 168

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 56/81 (69%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          YL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++V
Sbjct: 1  YLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIMV 60

Query: 69 FFLFIIMMLDIDIEVAEPRKK 89
           F+F++MML++     E  +K
Sbjct: 61 LFVFVVMMLNLGQHTVEQERK 81


>gi|257852686|gb|ACV71355.1| NADH dehydrogenase subunit 6 [Paradrypetes subintegrifolia]
          Length = 178

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLFLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|229187519|ref|ZP_04314660.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BGSC
           6E1]
 gi|228595958|gb|EEK53637.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BGSC
           6E1]
          Length = 162

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESAQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|133900450|gb|ABO41391.1| NADH dehydrogenase subunit 6 [Euonymus alatus]
          Length = 181

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDVFRR 174


>gi|317009953|gb|ADU80533.1| NADH dehydrogenase subunit J [Helicobacter pylori India7]
          Length = 182

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 95/179 (53%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNF-MVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L +   G+ L   LI+ A +     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVALLLTLILSAPSIGENLSNQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDVQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKSHTQFIKES 181


>gi|133900550|gb|ABO41441.1| NADH dehydrogenase subunit 6 [Sapria himalayana]
          Length = 180

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 15/173 (8%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F   +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASN--FMVFSAEGELSRL---VFKGN----- 129
           I        R    S  IG IL  E+     N    +   + + + L   V+ GN     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFLLDNESIPLLPTQRKTTSLGYTVYAGNIRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
           N+E +G +LYT Y     +   +LL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLLLLVAMIGAIVLTM-HRTTHSAVKRQDLFRR 174


>gi|56750217|ref|YP_170918.1| NADH dehydrogenase subunit J [Synechococcus elongatus PCC 6301]
 gi|56685176|dbj|BAD78398.1| NADH dehydrogenase subunit 6 [Synechococcus elongatus PCC 6301]
          Length = 201

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 19/204 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + +   ++++  VV   N +YS F L  AF++ AGL+LLL A FVA   +++Y
Sbjct: 7   VQLVTFIILTAGVVLAALGVVLSSNIVYSAFLLGGAFISIAGLYLLLNASFVAFAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK----KRGFLGSFFIGILA-AELIVCASNFMVFSA 117
           VGAV V  LF IM+++   E   P K    ++G       G+ A   L V ++ + V   
Sbjct: 67  VGAVNVLILFAIMLVN-KREDFRPLKFNWLRKGLTVLVCGGLFALLSLTVISTPWAVTPT 125

Query: 118 EGELSRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            G        G+  +  IG+  ++ Y  P E++  +LL++MIGAIVL    RRD + +D+
Sbjct: 126 PGA------SGDEAIYLIGEHFFSDYLLPFELASVLLLMAMIGAIVL---ARRDFEPEDL 176

Query: 177 SKQLESN---PDNSIVMVKVKSGK 197
                ++   P+ S   +   +GK
Sbjct: 177 ITGAAADLQLPERSREELLTGAGK 200


>gi|307637940|gb|ADN80390.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 908]
 gi|325996544|gb|ADZ51949.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 2018]
 gi|325998133|gb|ADZ50341.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 2017]
          Length = 182

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H   IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTHFIKES 181


>gi|317011469|gb|ADU85216.1| NADH dehydrogenase subunit J [Helicobacter pylori SouthAfrica7]
          Length = 182

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQNPKILCILSFGVALLLTLILSAPSISENLSKQVNP 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTDYLIPFEAAALMLLVAMVGGIATGIQKIHGKSHAQFIKES 181


>gi|217032332|ref|ZP_03437828.1| hypothetical protein HPB128_132g30 [Helicobacter pylori B128]
 gi|298735707|ref|YP_003728232.1| NADH dehydrogenase I subunit J [Helicobacter pylori B8]
 gi|216945998|gb|EEC24612.1| hypothetical protein HPB128_132g30 [Helicobacter pylori B128]
 gi|298354896|emb|CBI65768.1| NADH dehydrogenase I chain J [Helicobacter pylori B8]
          Length = 182

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVAVLLTLILSAPSIGENLSNQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|325105658|ref|YP_004275312.1| NADH dehydrogenase subunit J [Pedobacter saltans DSM 12145]
 gi|324974506|gb|ADY53490.1| NADH dehydrogenase subunit J [Pedobacter saltans DSM 12145]
          Length = 167

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 98/167 (58%), Gaps = 10/167 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +F++I  S LV+  +NP++SV  LI  F      ++LL A+F+A++  +VY+GA++
Sbjct: 4   FYFVAFLSIFFSLLVIFTKNPVHSVLYLIATFFTFTIHYILLNAQFLAVVNFIVYMGAIM 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFSAEGELSR 123
           V FLF++M+++++ +  EP K         +G++A       +V A   M   +   L  
Sbjct: 64  VLFLFVLMLMNLNKD-TEPMKSNLLK---IVGVIAGGGLLVTLVAAMKTMYTDSPSVLQN 119

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              +   V+N+GKVL++++  P E+S  +LL +M+GA++L  + +R 
Sbjct: 120 P--EIGLVKNLGKVLFSEFLLPFELSSLLLLSAMVGAVLLAKQEKRT 164


>gi|284794760|ref|YP_003412113.1| NADH dehydrogenase subunit 6 [Phaeoceros laevis]
 gi|254596080|gb|ACT75321.1| NADH dehydrogenase subunit 6 [Phaeoceros laevis]
          Length = 201

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 23/204 (11%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + S +A++S       +N ++ V  LI  F N +GL +LLG +  AMI LVVY GA
Sbjct: 2   ILFSVPSSIALVSGVTATRAKNLVHFVLFLIPVFRNTSGLLVLLGLDSFAMIFLVVYAGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGF-----------------LGSFFIGILAAELIVC 108
           +      + M  +I I        R                   + + +I IL  +L   
Sbjct: 62  IAASSPSVAMTSNIKIAEIHENVLRYLPVGGIIGLILLLEIFFIVDNDYIPILPTKLSTA 121

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              + V++ + +         N+E +G +LYT Y      S FILL++MIGA VL +   
Sbjct: 122 YLTYTVYAGKIQ------SWTNLETLGNLLYTTYFTLFLFSSFILLVAMIGATVLTMHKT 175

Query: 169 RDIKRQDISKQLESNPDNSIVMVK 192
             +KRQD+ +Q   +  N+I  ++
Sbjct: 176 TRVKRQDVFRQNARDFQNTIKKIR 199


>gi|251799768|ref|YP_003014499.1| NADH dehydrogenase subunit J [Paenibacillus sp. JDR-2]
 gi|247547394|gb|ACT04413.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus
           sp. JDR-2]
          Length = 171

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 11/160 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++FS + II + L+V+++  ++ V S+   F+  AG+F+LL AEFVA + +++Y GAV 
Sbjct: 13  FFIFSAIMIIGAVLMVSLQKVVHMVISMAAVFLGLAGMFVLLDAEFVAFVQVLIYAGAVS 72

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG----ELSR 123
           +  +F IMM +   + A+P K            LAA   +C    + ++       +   
Sbjct: 73  ILMIFGIMMTNHQNKQADPVKPLH-------ETLAAVGALCLFGILFYAIRTTDFPDAQP 125

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           L    +N  +IG++LYT Y  P E+   +L ++ IGAI +
Sbjct: 126 LQAVEDNTSSIGQLLYTGYVVPFELLSVLLTVAFIGAIAI 165


>gi|254424929|ref|ZP_05038647.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Synechococcus sp. PCC 7335]
 gi|196192418|gb|EDX87382.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Synechococcus sp. PCC 7335]
          Length = 197

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 14/171 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F L   + ++ +  VV + + +YS F L   F++ AG ++LL A FVA   +++Y
Sbjct: 5   VQVVSFGLLGLIMVVGALGVVLLSSIVYSAFLLGLVFISIAGFYILLNAGFVAAAQVLIY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117
           VGAV V  LF IM+++   +  E   K  ++G       AA   VCA  F     MV S 
Sbjct: 65  VGAVNVLILFGIMLVNKQEDFIE--VKNAWIGK------AATGAVCAGLFGLLSTMVLSH 116

Query: 118 EGELSRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              +S     G+  +E IG+  ++ Y  P E++  +LL++++GAI+L  R 
Sbjct: 117 PWAISSAPAAGDKAIEVIGQHFFSDYLLPFELASVLLLIALVGAIILARRE 167


>gi|156933130|ref|YP_001437046.1| NADH dehydrogenase subunit J [Cronobacter sakazakii ATCC BAA-894]
 gi|156531384|gb|ABU76210.1| hypothetical protein ESA_00940 [Cronobacter sakazakii ATCC BAA-894]
          Length = 187

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 105/185 (56%), Gaps = 16/185 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY GA++
Sbjct: 5   FYICALVAVLTTARVITHSNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFI--GILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++   V   R++R +L    +I  GIL+A L+V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLGDSVV--RQEREWLKPQIWIGPGILSAVLLVV----IVYAILG-VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
             +GN +  + +GK L+  Y   +E++  +LL  ++ A  L     R+ K  D+      
Sbjct: 118 GIEGNPISAKAVGKDLFQTYVLAVELASMLLLAGLVVAFHL----GREEKAGDVVSVRGG 173

Query: 183 NPDNS 187
            P ++
Sbjct: 174 APSDA 178


>gi|15645883|ref|NP_208061.1| NADH dehydrogenase subunit J [Helicobacter pylori 26695]
 gi|2314434|gb|AAD08313.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Helicobacter
           pylori 26695]
          Length = 182

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVVERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|41582338|gb|AAS07952.1| NADH-quinone oxidoreductase, J subunit [uncultured marine bacterium
           463]
          Length = 169

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 14/176 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FY+ + +A+ S+   +T  N  +++  LI + +  A +F L+GA F A + +V+Y
Sbjct: 1   MLATLFYIAALIALTSTMAALTRANAAHALIYLIVSLLAVAVMFFLMGAPFAAALEVVIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS--FFIGILAAELIVCASNFMVFSAEGE 120
            GA++V F+F+IMML++  +  E R++    G   F  G +AA L++     MV    G+
Sbjct: 61  AGAIMVLFVFVIMMLNLG-DTGEDREREWLAGRNWFVPGAMAALLLI--EMLMVL---GD 114

Query: 121 LSRLVFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            S+ V  GN V  + +G  L+  Y   +EI+  +LL S++GA  L    RR I R+
Sbjct: 115 -SQGVTSGNAVSPKAVGIRLFGPYLLAVEIASMLLLSSLVGAYHL---GRRFIVRR 166


>gi|164565466|ref|YP_001649183.1| NADH dehydrogenase subunit 6 [Seriatopora hystrix]
 gi|164565480|ref|YP_001649196.1| NADH dehydrogenase subunit 6 [Seriatopora caliendrum]
 gi|148669052|gb|ABR01610.1| NADH dehydrogenase subunit 6 [Seriatopora hystrix]
 gi|148669076|gb|ABR01623.1| NADH dehydrogenase subunit 6 [Seriatopora caliendrum]
          Length = 187

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 101/186 (54%), Gaps = 13/186 (6%)

Query: 7   FFYLFSFMAIISS-FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           FF  F  + II S  +VV+  NP+ S+F L+  F+N+A  FLLLG +F+A++ L++YVGA
Sbjct: 3   FFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS----------NFMVF 115
           + + FLF+IM+L  ++    P  KR    + +I I     I   S          +F + 
Sbjct: 63  IAILFLFVIMLL--NLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLFLGSFQIE 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           + +      +   +N+E +G++LY      L ++ FILL++MIG IVL        K+QD
Sbjct: 121 NWDLSFPWFLISYHNIEALGQILYVSGFCLLLLASFILLVAMIGVIVLTQETEFLSKKQD 180

Query: 176 ISKQLE 181
           +  Q+ 
Sbjct: 181 LFFQIN 186


>gi|195953126|ref|YP_002121416.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932738|gb|ACG57438.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 165

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 91/161 (56%), Gaps = 5/161 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L F + S +AI+S+   + V++PI+ +   +   ++ A  F  L A+ +A + LV+Y
Sbjct: 1   MELLVFVVISIIAIVSALGAILVKSPIHVMVWFLGFILSVAASFFALKADLLAGLQLVIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL-IVCASNFMVFSAEGEL 121
             A++VF++ +I  +  +    + +   GF    F+  L A L  + AS ++V S+    
Sbjct: 61  AVAIVVFYVLVITTIPWE----KVKMFEGFYKKEFVFALPAFLFTIGASIYLVISSRFSN 116

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            R     +NV  +G VL+T+Y  P E++ FILL++MIGAI+
Sbjct: 117 LRQPLPKDNVSALGTVLFTKYIAPFELASFILLIAMIGAII 157


>gi|78778013|ref|YP_394328.1| NADH dehydrogenase subunit J [Sulfurimonas denitrificans DSM 1251]
 gi|78498553|gb|ABB45093.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sulfurimonas
           denitrificans DSM 1251]
          Length = 190

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 100/185 (54%), Gaps = 13/185 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLF+F+ I   ++ VT    +Y++ +L    +  +  F +LGA+F+  + +VVY 
Sbjct: 3   EAIAFYLFAFLTIAMFYIAVTTSQALYALSALAAGMIFISAFFFILGADFLGAVQIVVYS 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI--LAAELIVCASNFMVFSAEGEL 121
           GAV+  + F +M  D   EV E +  +  +    IG+  LAA ++V      +  +  E 
Sbjct: 63  GAVMALYAFGMMFFDTTREVKEKQGNKAIV----IGLSSLAALMVVIIVAAPIVGSNIEA 118

Query: 122 SRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
              + +G  NV+ +G VL+T+Y  P E++  +LL++MI  IVL        K+ D+S  L
Sbjct: 119 LYPMSEGVGNVQEVGMVLFTKYLVPFEVAAVMLLVAMIAGIVL------AGKKMDLSLTL 172

Query: 181 ESNPD 185
            S+ +
Sbjct: 173 MSDSE 177


>gi|317968122|ref|ZP_07969512.1| NADH:ubiquinone oxidoreductase subunit J [Synechococcus sp. CB0205]
          Length = 199

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F   S    I +  VV + + +YS F L   F++ AGL+LLL A FVA   ++VYV
Sbjct: 8   QFICFVCLSAAVAIGALGVVLLPSIVYSAFLLGGVFLSVAGLYLLLNASFVAAAQVLVYV 67

Query: 64  GAVIVFFLFIIMMLDI--DIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEGE 120
           GAV V  LF IM+++   D+        R FL G+   G+ A  L V       F+    
Sbjct: 68  GAVNVLILFAIMLVNKKEDLAAIPGLAVRRFLSGAVCAGLFALLLRV------AFTTPWA 121

Query: 121 LSRLVFKGNNVE-NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           L      G      IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+   D+
Sbjct: 122 LPGPTPIGEEATIRIGEHLFSDYLLPFELASVLLLMAMIGAIVL---ARRDVFSTDV 175


>gi|290958251|ref|YP_003489433.1| NADH dehydrogenase subunit NuoJ [Streptomyces scabiei 87.22]
 gi|260647777|emb|CBG70882.1| NuoJ, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
          Length = 283

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 98/203 (48%), Gaps = 28/203 (13%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++   +A+I +   V ++  ++S   L    V  A  +L  GA F+ ++ +VVY 
Sbjct: 19  EAFQFWVLGTVAVIGALCTVFMKRAVHSALCLAGTMVILAVFYLANGAYFLGIVQIVVYT 78

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121
           GA+++ FLF++M++ +    A    K    G  ++ +L      C + F  ++ +  G  
Sbjct: 79  GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLALL------CGAGFGILLIAGIGNA 129

Query: 122 SRLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           S   F        G NVE +  +++T Y +  E++G +L+ + +GA+VL   HR   +R 
Sbjct: 130 SLTEFSGLGTANAGGNVEGLAALIFTDYVFAFELTGALLITAAVGAMVLT--HRERTERP 187

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
              ++L           +V+ GK
Sbjct: 188 KTQRELAEQ--------RVREGK 202


>gi|227537462|ref|ZP_03967511.1| possible NADH dehydrogenase (quinone) [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227242736|gb|EEI92751.1| possible NADH dehydrogenase (quinone) [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 182

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ L FY F+ +AI S+ LVV ++N   ++F         AGL+L   A+FVA+  ++
Sbjct: 1   MTLEELLFYAFAALAIGSALLVVNLKNTARALFLFFIVLFAMAGLYLFALADFVAITQIM 60

Query: 61  VYVGAVIVFFLFIIMM----LDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCAS 110
           VYVG V++  +F  M+    L  D++ A       P  +   L S F+ I+   ++   S
Sbjct: 61  VYVGGVLILMIFAFMLSNKELLKDLQHASGKFLTLPNWQSLILSSVFLIIMITAVVEWQS 120

Query: 111 NFMVFSAEGELSRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
               +  +  ++  +     NN++ +G    TQY  P E+ G  L++++IGA
Sbjct: 121 EVPAWIEQARINNTLIHPSDNNIQQLGFKFMTQYILPFELIGIFLMMTLIGA 172


>gi|292559473|ref|YP_003540841.1| NADH dehydrogenase subunit 6 [Hartmannella vermiformis]
 gi|290775726|gb|ADD62225.1| NADH dehydrogenase subunit 6 [Hartmannella vermiformis]
          Length = 205

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 114/201 (56%), Gaps = 15/201 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ + +FF L +FM  ++  LV+  +NP+ SV  L+  F  +A LF+LL  +F+AM+ ++
Sbjct: 1   MLTEVIFFGL-AFMIFLAGLLVIFSKNPVQSVLFLVVVFCLSAQLFVLLEVDFLAMVLII 59

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGA+ V FLFI+MML+I  +E++E   +   L +    I+ +E++      + ++   
Sbjct: 60  VYVGAIAVLFLFIVMMLNIRVVELSEILNRYFPLATIVGLIIFSEIVFSLYYSLGYNYSN 119

Query: 120 ----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD----- 170
               +  +     +NV ++G VLYT ++  L ISG +LLL+MI +I+L L          
Sbjct: 120 IFYLDWYKSFLNHSNVVSLGLVLYTYFSPFLIISGILLLLAMISSIMLTLDLPNSGELNL 179

Query: 171 ---IKRQDISKQLESNPDNSI 188
              +K+Q I  Q++  P N +
Sbjct: 180 STLVKKQSIPDQVD-RPTNDL 199


>gi|133900522|gb|ABO41427.1| NADH dehydrogenase subunit 6 [Pera bicolor]
          Length = 183

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 16/175 (9%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-----HRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +      +R  +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTPLNRNAVKRQDIFRR 177


>gi|257852668|gb|ACV71346.1| NADH dehydrogenase subunit 6 [Heywoodia lucens]
          Length = 180

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 91/173 (52%), Gaps = 15/173 (8%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDVFRR 174


>gi|257852716|gb|ACV71370.1| NADH dehydrogenase subunit 6 [Siphonodon celastrineus]
          Length = 180

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 27/176 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +    +  + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDI 176
            V    N+E +G +LYT Y+    +   ILL++MIGAIVL + HR     +KRQD+
Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDV 171


>gi|317014661|gb|ADU82097.1| NADH:ubiquinone oxidoreductase subunit J [Helicobacter pylori
           Gambia94/24]
          Length = 182

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H   IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTHFIKES 181


>gi|308185017|ref|YP_003929150.1| NADH dehydrogenase subunit J [Helicobacter pylori SJM180]
 gi|308060937|gb|ADO02833.1| NADH dehydrogenase subunit J [Helicobacter pylori SJM180]
          Length = 182

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181


>gi|320009195|gb|ADW04045.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 284

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 96/185 (51%), Gaps = 10/185 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A++ +   V ++  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 16  EAVQFWILGTVAVVGALSTVLMKKAVHSALSLAGTMIVLAVFYLANGAYFLGIVQVVVYT 75

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +     + E  K + +L +      GIL   LI       + S  
Sbjct: 76  GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGIL---LIAGIGQASLQSFN 132

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  +     G NVE +  +++T+Y +  EI+G +L+ + +GA  ++L HR   +R    +
Sbjct: 133 GLGAANAQHGGNVEGLANLIFTKYVFAFEITGALLITATVGA--MLLTHRERTERAKTQR 190

Query: 179 QLESN 183
           +L   
Sbjct: 191 ELSQE 195


>gi|257852720|gb|ACV71372.1| NADH dehydrogenase subunit 6 [Lepidobotrys staudtii]
          Length = 169

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 23/169 (13%)

Query: 28  PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-----E 82
           P++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I I     E
Sbjct: 1   PVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEE 60

Query: 83  VAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           V       G +G  F            I +L  +    +  + V++ +      V    N
Sbjct: 61  VLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK------VRSWTN 114

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           +E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 115 LETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 163


>gi|312890387|ref|ZP_07749924.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603]
 gi|311297157|gb|EFQ74289.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603]
          Length = 165

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 94/167 (56%), Gaps = 8/167 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +F++I+ + LV+  +NP++SV  LI  F      ++LL A+F+A++  +VY+GA++
Sbjct: 4   FYFVAFLSILFALLVIFSKNPVHSVLYLILTFFTFTIHYILLNAQFLAIVNFIVYMGAIM 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V     ++ML    E +EP K      +  IG     LI  A++F V       S +   
Sbjct: 64  V-LFLFVLMLLNLNEDSEPVKTSMVKFAAIIGG-GCLLITLAASFKVVHPS---SVVALT 118

Query: 128 GNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
            +N   V+N+GKVL+ ++  P E+S  +L  +M+GA++L  + + ++
Sbjct: 119 NDNLGLVKNLGKVLFNEFLLPFEVSSLLLFSAMVGAVLLATKDKSNV 165


>gi|197121682|ref|YP_002133633.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. K]
 gi|220916478|ref|YP_002491782.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196171531|gb|ACG72504.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. K]
 gi|219954332|gb|ACL64716.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 211

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 91/170 (53%), Gaps = 7/170 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + FY+ + + +  +  V   RN +YS F L+ A + A  L++LL A+FVA+  L++Y
Sbjct: 47  LPDVLFYVLAVLTVAGAAGVALSRNILYSTFGLLTALLGAGALYVLLSADFVAVTQLLIY 106

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G V+V  LF +M+ +   E+       G  G F + + AA +++  +    + A G  +
Sbjct: 107 IGGVLVLILFAVMLTNRITEINVSNTSFGLFGGFLLFVSAAPVLLAVALLTPWQA-GPAA 165

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            L       + IG    +++  P E++  +LL +++GAIV+    R++IK
Sbjct: 166 PL---APTTQAIGDAFLSRWLLPFEVASLVLLSTLVGAIVI---ARKEIK 209


>gi|170077546|ref|YP_001734184.1| NADH dehydrogenase subunit J [Synechococcus sp. PCC 7002]
 gi|22651980|gb|AAN03535.1|AF381034_3 NADH dehydrogenase subunit G [Synechococcus sp. PCC 7002]
 gi|169885215|gb|ACA98928.1| NADH dehydrogenase subunit G [Synechococcus sp. PCC 7002]
          Length = 205

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 24/179 (13%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M + S+  VV   N +YS F L   F++ +G ++LL A+FVA   +++Y
Sbjct: 7   VQIVSFVILTVMMLGSALGVVLFENIVYSAFLLGGVFISISGFYILLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL---AAELIVCASNF-----MV 114
           VGA+ V  LF IM+++         KK  F  S   G L    A  +VC   F     MV
Sbjct: 67  VGAINVLILFAIMLVN---------KKEDF--SQMPGRLLRQGATALVCLGLFALLGTMV 115

Query: 115 FSAEGELSRL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                ELS +     GN+V  I K  ++ +  P E++  +LL++M+GAI+L    RRDI
Sbjct: 116 LVTPWELSTISPAAVGNSVVAIAKHFFSDFLLPFELASVLLLIAMVGAIIL---ARRDI 171


>gi|300770867|ref|ZP_07080744.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762140|gb|EFK58959.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 182

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 12/181 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ L FY F+ +AI S+ LVV ++N   ++F         AGL+L   A+FVA+  ++
Sbjct: 1   MTLEELLFYAFAALAIGSALLVVNLKNTARALFLFFIVLFAMAGLYLFALADFVAITQIM 60

Query: 61  VYVGAVIVFFLFIIMM----LDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCAS 110
           VYVG V++  +F  M+    L  D++ A       P  +   L S F+ I+   ++   S
Sbjct: 61  VYVGGVLILMIFAFMLSNKELLKDLQHASGKFLTLPNWQSLILSSAFLIIMITAVVEWQS 120

Query: 111 NFMVFSAEGELSRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               +  +  ++    +   NN++ +G    TQY  P E+ G  L++++IGA  L  +  
Sbjct: 121 EVPAWIEQARINNTFIRPSDNNIQQLGFKFMTQYILPFELIGIFLMMTLIGAAHLSRKED 180

Query: 169 R 169
           +
Sbjct: 181 K 181


>gi|133900400|gb|ABO41366.1| NADH dehydrogenase subunit 6 [Bruguiera gymnorhiza]
          Length = 179

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 17/173 (9%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F N +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRNTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFFIG----ILAAELIVC-----ASNFMVFSAEGELSRLVF 126
           I     EV       G +G  F      IL  E I        + +M ++      R   
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTYMRYTVYAVKVR--- 119

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
              N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++
Sbjct: 120 SWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQNIFRR 172


>gi|302864910|ref|YP_003833547.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Micromonospora aurantiaca ATCC 27029]
 gi|315501195|ref|YP_004080082.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. L5]
 gi|302567769|gb|ADL43971.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora aurantiaca ATCC 27029]
 gi|315407814|gb|ADU05931.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. L5]
          Length = 256

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 22/207 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++ + +A++ +  +V  RN ++S   L+   +     ++L    F+ M+ ++VY 
Sbjct: 17  EEVTFWILAPLALLGAIGMVWARNAVHSALWLVLTMLCLGVFYVLQAGPFIGMVQIIVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILAAELIVCASNFMVFS- 116
           GA+++ FLF++M++  D   +     RG       LG  F G++   L            
Sbjct: 77  GAIMMLFLFVLMLVGRDASDSLIETLRGQRVAAVVLGLGFAGLVGTGLYRALDGVQPVGL 136

Query: 117 --AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             A GE         NV+ I ++L+T+Y +  E++  +L+ + +GA+VL    RR   R 
Sbjct: 137 DEANGE--------GNVQGIARLLFTKYVFAFELTSALLITAAVGAMVLAHVERRKADRM 188

Query: 175 DISKQLES--NPDNSIVMVKVKSGKGI 199
           D    +++   P N       K G G+
Sbjct: 189 DQIATMKARFRPGN---YPGPKPGPGV 212


>gi|126659018|ref|ZP_01730159.1| NADH dehydrogenase subunit J [Cyanothece sp. CCY0110]
 gi|126619675|gb|EAZ90403.1| NADH dehydrogenase subunit J [Cyanothece sp. CCY0110]
          Length = 208

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 16/174 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + II++  VV + N +YS F L   F++ +G+++LL A+FVA   +++Y
Sbjct: 7   VQVISFAILAALVIIAALGVVLLENIVYSAFLLGGVFISISGIYILLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           VGAV V  LF IM+++   + +        R     +      +LA  +++       +S
Sbjct: 67  VGAVNVLILFAIMLVNKKQDYSNLPGRWLKRSATALVCGGLFALLATMVLITP-----WS 121

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            E     L+   N V  IGK  ++ +  P E++  +LL++M+GAIVL    RRD
Sbjct: 122 LETNAPGLI--ENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVL---ARRD 170


>gi|254779812|ref|YP_003057918.1| NADH dehydrogenase subunit J [Helicobacter pylori B38]
 gi|254001724|emb|CAX29955.1| NADH-ubiquinone oxidoreductase, NQO10 subunit [Helicobacter pylori
           B38]
          Length = 182

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 8/179 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYV
Sbjct: 3   ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121
           GAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +   
Sbjct: 63  GAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVNS 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           + +  +  N++ IG VL+T Y  P E +  +LL++M+G I   ++      H   IK  
Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTHFIKES 181


>gi|317130738|ref|YP_004097020.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475686|gb|ADU32289.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 164

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 11/166 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + F + + +AI  S LV+ +R   + V S+ F F   AGL+ LLGA+F+ +I ++
Sbjct: 1   MNTQMIIFLILAILAIACSVLVLQLRRISHRVVSMAFVFFAIAGLYFLLGADFIGIIQII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEV--AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           VY GAV + F+F +MM +       A PR+    L   FIG+  A L+     FM++   
Sbjct: 61  VYAGAVTILFIFGMMMTEHRNVTFSAHPRRAHRVLS--FIGV--ATLL----GFMLYGIL 112

Query: 119 G-ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           G +L          E IG  LY  Y       GF+L  ++IGAIV+
Sbjct: 113 GLDLPASEPYEGTAEAIGLELYGHYVVAFLAMGFLLTAALIGAIVI 158


>gi|229007601|ref|ZP_04165196.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides
           Rock1-4]
 gi|228753739|gb|EEM03182.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides
           Rock1-4]
          Length = 146

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           ++ + +L+F F++ AGL+ LL AEFV +  +++Y GA+ +  +F IM+   D E      
Sbjct: 1   MHMMLALVFTFLSIAGLYFLLLAEFVGVAQILIYSGAITIIMIFGIMLTKHDAENESSFS 60

Query: 89  KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
            R +L  FF  ++   ++  A N + F+       +     N   IG +LY++Y  P E+
Sbjct: 61  FRKWL-IFFAVVVFGGVMYFAVNNIDFTNRSVQGSVPLHEQNTLQIGTLLYSKYVIPFEL 119

Query: 149 SGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +  ILL++++GAIVL    ++D K  D
Sbjct: 120 TSVILLVALVGAIVLA---KKDEKEGD 143


>gi|271962164|ref|YP_003336360.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270505339|gb|ACZ83617.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 270

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 103/188 (54%), Gaps = 4/188 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +++ ++  +V  R  +YS   L    ++ A L+ +  A F+A + ++VY 
Sbjct: 3   ETITFWVLAVVSVSAALGLVFSRKAVYSALMLGVVMLSLAVLYAVQDAPFLAAVQIIVYT 62

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV++ FLF++M++ +D    + E  K + F  +      AA L + A N +   A+G  
Sbjct: 63  GAVMMLFLFVLMLVGVDSADSLVETIKGQRFWATIAGLGFAALLALGAGNMVFAPAKGVG 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK--RQDISKQ 179
             +   G NV  + ++++T++ +  E++  +L+ + +GA+VL  R R   K  ++D+++ 
Sbjct: 123 GAVQEAGGNVPALAQLIFTRHVFAFEVTSALLITAALGAMVLAHRERVRPKATQRDLARA 182

Query: 180 LESNPDNS 187
             + P  S
Sbjct: 183 RFTGPQPS 190


>gi|271501260|ref|YP_003334285.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech586]
 gi|270344815|gb|ACZ77580.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech586]
          Length = 183

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 98/181 (54%), Gaps = 9/181 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY GA++
Sbjct: 5   FYATAIIAVLATLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F++MML++   V E ++K     + +IG  A  LI+ A   ++      ++     
Sbjct: 65  VLFVFVVMMLNLGNSVDE-QEKLWLKPAVWIGPGALSLILLA---VIVKGITSITDQNIV 120

Query: 128 GN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DI--KRQDISKQLES 182
           GN  + + +G  L+  Y   +E++  +LL  ++ A  +    +R D+  K QD  K++  
Sbjct: 121 GNMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGDLVAKDQDADKKITE 180

Query: 183 N 183
            
Sbjct: 181 E 181


>gi|254382433|ref|ZP_04997792.1| NADH dehydrogenase subunit J [Streptomyces sp. Mg1]
 gi|194341337|gb|EDX22303.1| NADH dehydrogenase subunit J [Streptomyces sp. Mg1]
          Length = 270

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 95/181 (52%), Gaps = 10/181 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   + ++  ++S  SL    +  A  +L  GA F+ ++ ++VY 
Sbjct: 15  EAVQFWVLGTVAVIGALSTILMKKAVHSALSLAGTMIILAVFYLANGAYFLGVVQVIVYT 74

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA----ELIVCASNFMVFSAEG 119
           GA+++ FLF++M++ +    A    K    G  ++ +L A     L++        +   
Sbjct: 75  GAIMMLFLFVVMLVGV---TAADSLKETLKGQRWMAVLCALGFGTLLIAGIAHARLNHFN 131

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            L R +  G +VE +  +++T+Y +  EI+G +L+ + +GA+VL   HR   +R    ++
Sbjct: 132 GLGR-INSGGHVEGLATLIFTKYVFAFEITGALLITAAVGAMVLT--HRERTERAATQRE 188

Query: 180 L 180
           L
Sbjct: 189 L 189


>gi|87301842|ref|ZP_01084676.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 5701]
 gi|87283410|gb|EAQ75365.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 5701]
          Length = 208

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 13/179 (7%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V Q + F   S   ++ S  VV + N +YS F L   F++ AGL+LLL A FVA   ++V
Sbjct: 6   VTQLVCFIALSLTLVLGSLGVVLLPNIVYSAFLLAGVFLSVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFL--GSFFIGILAAELIVCASNFMVFSAE 118
           YVGAV V  LF IM+++    +AE P      L  G+  +G+    L V  +        
Sbjct: 66  YVGAVNVLILFAIMLVNKKEAMAEIPGLLLRRLLSGAVCLGLFLLILRVDLTTPWAVPGP 125

Query: 119 GELSRLVFKGNNVEN-IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             L      G++    IG  L++ Y  P E++  +LL++MIGAIVL    RRD+   D+
Sbjct: 126 TPL------GDDATVLIGIHLFSDYLLPFELASVLLLMAMIGAIVL---ARRDVFSSDV 175


>gi|148657104|ref|YP_001277309.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus
           sp. RS-1]
 gi|148569214|gb|ABQ91359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus
           sp. RS-1]
          Length = 215

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 12/176 (6%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F +F+   ++++ + VTV+N +++   LI +F     L+LL+ AEF+ +  +++YVG
Sbjct: 6   TILFLVFAVFILVAAIMTVTVKNIVHAALWLISSFFGVGALYLLMEAEFLGVAQVLIYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           AV +  LF IM L  D+E ++ R+   R ++       L   LIV      V +   +L 
Sbjct: 66  AVSILILFAIM-LTRDLEGSQNRQLTPRWWIALLVPAALFGLLIVPT----VMTHAWQLP 120

Query: 123 RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                G     +  + IG     +Y  P E++  +LL++MIGAIV+    R   +R
Sbjct: 121 PPPPAGQPPSISGAQQIGTAFMREYLLPFEVAAILLLVAMIGAIVVAFEEREQRRR 176


>gi|315453244|ref|YP_004073514.1| NADH dehydrogenase I chain J [Helicobacter felis ATCC 49179]
 gi|315132296|emb|CBY82924.1| NADH dehydrogenase I chain J [Helicobacter felis ATCC 49179]
          Length = 174

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 96/175 (54%), Gaps = 6/175 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++L FY F+ + +  +F+VVT  N +Y++ SL  A V  +  F LL AEF+ ++ ++VYV
Sbjct: 3   ETLAFYFFAALTLGMAFVVVTTTNILYAMTSLATAMVFVSAFFFLLDAEFLGVVQILVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM---VFSAEGE 120
           GAV+V + F +M L+   EV E            + +    + +  + F+    ++ +  
Sbjct: 63  GAVVVMYAFGMMFLNASQEVQERAHAPKIPALLVMVLAVVLVALLGAPFIAQYAYTLQES 122

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           LS  V   +N + IG VL+++Y    E+  F+LL++++GAI   L  ++  K++ 
Sbjct: 123 LSPSV-DISNTKLIGYVLFSKYLVAFEVGAFMLLVALVGAIASAL--KKSPKKES 174


>gi|158335316|ref|YP_001516488.1| NADH dehydrogenase subunit J [Acaryochloris marina MBIC11017]
 gi|158305557|gb|ABW27174.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain J,
           putative [Acaryochloris marina MBIC11017]
          Length = 198

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 16/165 (9%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L S M + ++  VV   + +YS F+L   F++ AGL++LL A+FV+   +++YVGAV V 
Sbjct: 14  LLSVMMLGAALGVVLFESIVYSAFTLGAVFISIAGLYILLNADFVSAAQILIYVGAVNVL 73

Query: 70  FLFIIMMLDIDIEVAEPRKKR-------GFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            LF IM+++   E  +P  +R        F+      +LA   +V  +N+ V  A     
Sbjct: 74  ILFAIMLVN-KTEDFKPLPRRWIRKVSTAFVSLALFTLLAT--MVLQTNWPVDVA----- 125

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            L    ++VE IG   +T Y  P E++  +LL++++GA+VL  R 
Sbjct: 126 -LAPPASSVETIGIHFFTDYLLPFELASILLLMALVGAVVLARRE 169


>gi|332708450|ref|ZP_08428426.1| NADH dehydrogenase subunit J [Lyngbya majuscula 3L]
 gi|332352781|gb|EGJ32345.1| NADH dehydrogenase subunit J [Lyngbya majuscula 3L]
          Length = 208

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 15/178 (8%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S + I ++  VV + N +YS F L   F+  +GL++LL A+FVA   +++YVGAV V 
Sbjct: 14  ILSVIMIGAALGVVLLSNIVYSAFLLAGVFIGISGLYILLNADFVAAAQILIYVGAVNVL 73

Query: 70  FLFIIMMLDIDIEVAEPRKKR----GFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
            LF IM+++   E  +P  KR    G      IG+ A    +V A+ + V     E+   
Sbjct: 74  ILFAIMLVN-KREDFQPMTKRWVRTGSTAIVCIGLFALLSTMVLATPWSV-----EIDPA 127

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLE 181
           +   N    IG+  ++ +  P E++  +LL++M+GAI++    RRD I  + +S+  E
Sbjct: 128 MVVTNTAVEIGQHFFSDFLLPFELASVLLLMAMVGAIII---ARRDYIPEELVSRDQE 182


>gi|581746|emb|CAA44376.1| NDHG [Synechocystis sp. PCC 6803]
          Length = 202

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 24/193 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + +F+ I ++  VV + N +YS F L   F++ +G+++LL A+FVA   ++VY
Sbjct: 7   VQYISFLILAFLVIGAALGVVLLSNIVYSAFLLGGVFLSISGIYILLNADFVAAAQVLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNF-----MV 114
           VGAV V  LF IM+++         K+  F    G +   +  A  +VC   F     MV
Sbjct: 67  VGAVSVLILFAIMLVN---------KREDFSKIPGRWLRNVSTA--LVCTGIFALLSTMV 115

Query: 115 FSAEGELSRL-VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                +++    F  N +  IGK  ++ Y  P E++  +LL++M+GAI+L    R  +  
Sbjct: 116 LITPWQINETGPFVENTLVTIGKHFFSDYLLPFELASVLLLMAMVGAIILA---RPGLNS 172

Query: 174 QDI-SKQLESNPD 185
           + +  KQ    PD
Sbjct: 173 RIVRGKQNRHGPD 185


>gi|194336916|ref|YP_002018710.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309393|gb|ACF44093.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 170

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 5/145 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FYLF+ + + S+  VV  RN IYS FSL+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 7   TVIFYLFAAITLFSAAFVVFTRNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SR 123
            ++V  LF +M  +  + V +  +    +     G L    IV    +  ++  G + S 
Sbjct: 67  GILVLLLFGVMFTNSIMHVGQKSEVLHIIP----GTLLLAAIVGGLLYTFYTTHGWMPSE 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEI 148
            + +G+ VE IG    ++Y  P E+
Sbjct: 123 TMLQGSIVERIGFETMSRYVLPFEM 147


>gi|227494512|ref|ZP_03924828.1| NADH dehydrogenase subunit J [Actinomyces coleocanis DSM 15436]
 gi|226832246|gb|EEH64629.1| NADH dehydrogenase subunit J [Actinomyces coleocanis DSM 15436]
          Length = 321

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 96/181 (53%), Gaps = 9/181 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           LFF++ + M I  +  V+ ++   Y+  S++   V  A L+LL GA F+ ++ +VVY GA
Sbjct: 20  LFFFVATAM-IAGALGVLFLKKAAYAAISMVVVMVGLAVLYLLHGAPFMGIVQIVVYTGA 78

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL- 124
           +++ FLF++MM+ ++       + R ++       LA  L+      + ++A GE     
Sbjct: 79  IMMLFLFVLMMIGLNASDEYQSQNRTYI--TMAVTLATVLLAGFGITVAYTAMGETQEFK 136

Query: 125 --VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISKQ 179
              F    VE + K L+  Y + +E++G +L++++IGA++L    R   R  +R  +  +
Sbjct: 137 VDAFSDAPVEELAKTLFANYWFSMELAGTLLIVAVIGAVLLTNGDRLTKRHTQRSVVEAK 196

Query: 180 L 180
           +
Sbjct: 197 M 197


>gi|37526969|ref|NP_930313.1| NADH dehydrogenase subunit J [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786402|emb|CAE15455.1| NADH dehydrogenase I chain J (NADH-ubiquinone oxidoreductase chain
           J) [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 181

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 92/167 (55%), Gaps = 8/167 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    +AI+++  V+T  NPI+++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5   FYTAGLIAILATIRVITHTNPIHALLYLIVSLLALSAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPR----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122
           V F+F++MML++   V E      K R ++G    GIL+  L+V     ++  + G+++ 
Sbjct: 65  VLFVFVVMMLNLGKSVVEQERVWLKPRTWIGP---GILSTMLLVVLVYTIINVSHGDIAD 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            +  +  + + +G  L+  Y   +E++  +LL  M+ A  +   H++
Sbjct: 122 NITGEVVSAKEVGISLFGPYVLAVELASLLLLAGMVVAYHIGREHKQ 168


>gi|291618181|ref|YP_003520923.1| NuoJ [Pantoea ananatis LMG 20103]
 gi|291153211|gb|ADD77795.1| NuoJ [Pantoea ananatis LMG 20103]
          Length = 204

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL   +A++++  V+T  NP++++  LI + ++ AG+F  LGA F   + ++VY GA++
Sbjct: 26  FYLCGLVAVVTTLRVITHTNPVHALLYLIVSLLSVAGVFFSLGAYFAGALEIIVYAGAIM 85

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126
           V F+F++MML++  +  E +++     S +IG  L + L++    + + +A+ +   +  
Sbjct: 86  VLFVFVVMMLNLG-KATEKQEREWLSPSLWIGPGLVSFLLLAVMIYAIMTAQDQ--GIDG 142

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           K  + + +G  L+  Y   +E++  +LL  ++ A  L    R+
Sbjct: 143 KIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHLGREERQ 185


>gi|257852684|gb|ACV71354.1| NADH dehydrogenase subunit 6 [Cassipourea lanceolata]
          Length = 178

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRDTSGLLLFLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129
           I        R    S  IG IL  E+     N  +     +   + L   V+ G      
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++
Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172


>gi|195953135|ref|YP_002121425.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932747|gb|ACG57447.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 173

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 5/175 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + FYLF  ++II    VV+  NPIY V  L+ A +  +G+F   GAE +  + L+VY
Sbjct: 2   LNQIAFYLFGGISIICGLGVVSASNPIYVVLWLLGALIAISGIFFSAGAELLGALQLMVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           V A+ VF++ II  +         +  R  G     FI +L  E  +   + +  +    
Sbjct: 62  VVAIAVFYILIITAVPWRKLHKNEQHNRLIGVTVLPFIALLYVEAFIVGISGVSITKNKI 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +  +     N E IG  L++ Y +  E+   +LL+SMIGAI+L    R++ K  D
Sbjct: 122 IETITKNYGNAEVIGIKLFSTYFWAFELMSVLLLISMIGAILL---GRKEEKTYD 173


>gi|237752483|ref|ZP_04582963.1| NADH oxidoreductase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375972|gb|EEO26063.1| NADH oxidoreductase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 184

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 12/167 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY+F  + +    +VVT +N +Y++ +L    +  +  F LLGAEF+ ++ +VVY 
Sbjct: 3   EAIAFYVFCALTLAMFLVVVTTQNILYALSALAAGMMFVSAFFFLLGAEFLGVVQIVVYT 62

Query: 64  GAVIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIVC----ASNFMVFS 116
           GAVI  + F +M  D   ++ E  +  K   FL    +G L   LIV     A N     
Sbjct: 63  GAVIALYAFAMMFFDAQKLENEKVQSPKMLFFLSG--MGALLLVLIVVAPVIAENLASLQ 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           A   +   +    NV+ +G VL+T++  P EI+  +LL++MI  IVL
Sbjct: 121 ATTPIKEEI---GNVQMVGYVLFTKFLIPFEIAAVMLLVAMIAGIVL 164


>gi|297585411|ref|YP_003701191.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           selenitireducens MLS10]
 gi|297143868|gb|ADI00626.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           selenitireducens MLS10]
          Length = 165

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 13/174 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q +FF + + +AI  + +++ +    + V S+ F+F   AGL+ LLGAEF+ +I ++
Sbjct: 1   MTAQMIFFTILALIAITGAVMMMLLTTISHRVVSMWFSFFAVAGLYFLLGAEFIGIIQIM 60

Query: 61  VYVGAVIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSF-FIGILAAELIVCASNFMVFS 116
           VYVGA+ + F+F +MM D   +  E  +PR     +G+   +G+L   L    S  +  +
Sbjct: 61  VYVGAITILFVFGMMMTDHKTVSFE-KDPRTAHNVIGTISAVGVLGILLYGIFSMDLPGN 119

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           A+ E++        V  IG  LY  Y        F+L  ++IGAIV+  R   D
Sbjct: 120 AQPEVT-------TVHAIGMDLYGHYFVAFIAVAFLLTAALIGAIVIA-RKEAD 165


>gi|327394574|dbj|BAK11996.1| NADH-quinone oxidoreductase chain J NuoJ [Pantoea ananatis AJ13355]
          Length = 200

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL   +A++++  V+T  NP++++  LI + ++ AG+F  LGA F   + ++VY GA++
Sbjct: 22  FYLCGLVAVVTTLRVITHTNPVHALLYLIVSLLSVAGVFFSLGAYFAGALEIIVYAGAIM 81

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126
           V F+F++MML++  +  E +++     S +IG  L + L++    + + +A+ +   +  
Sbjct: 82  VLFVFVVMMLNLG-KATEKQEREWLSPSLWIGPGLVSFLLLAVMIYAIMTAQDQ--GIDG 138

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           K  + + +G  L+  Y   +E++  +LL  ++ A  L    R+
Sbjct: 139 KIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHLGREERQ 181


>gi|133900498|gb|ABO41415.1| NADH dehydrogenase subunit 6 [Marathrum cf. oxycarpum Cachoeirc
           9/1996]
          Length = 179

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFFILVFCDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILEFESIPLLPTQKQTAYLKYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y   L +S  ILL++MIGAIVL +   + +KRQD+ ++
Sbjct: 118 -VRPWTNLETLGNLLYTYYFLWLLLSSLILLVAMIGAIVLTMHRTKKVKRQDLFRR 172


>gi|209427647|ref|YP_002274321.1| NADH dehydrogenase subunit 6 [Blastocladiella emersonii]
 gi|82492275|gb|ABB78014.1| NADH dehydrogenase subunit 6 [Blastocladiella emersonii]
          Length = 201

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 9/141 (6%)

Query: 8   FYLFSFMAIISSFLVVTV-RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FYL S + I+S  L + + +NPI SV  L+  FVN A +F+LLG   +  I ++VYVGA+
Sbjct: 8   FYLLSVLTILSGVLTIVMGKNPINSVVYLVSCFVNCALIFILLGVNLLGFIYIIVYVGAI 67

Query: 67  IVFFLFIIMMLDIDIEVAEPR---KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
            + F+F+IMM+D+    +E       +GFL   +       LI+  S  ++   E  LS 
Sbjct: 68  AILFIFVIMMMDLRNLTSEKEMSSNSKGFLSLSY----PLALIIAISTLLLMMKENNLSV 123

Query: 124 LVFKGNNV-ENIGKVLYTQYA 143
           ++    ++  +IGK++   + 
Sbjct: 124 ILQITTDLGSSIGKIVVNDFT 144


>gi|133900530|gb|ABO41431.1| NADH dehydrogenase subunit 6 [Podostemum ceratophyllum]
          Length = 179

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 23/176 (13%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFFILVFCDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + V++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILEFESIPLLPTQKQTAYLKYTVYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            V    N+E +G +LYT Y + L +S  ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 118 -VRPWTNLETLGNLLYTYYFFWLLLSSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172


>gi|93005411|ref|YP_579848.1| NADH dehydrogenase (quinone) [Psychrobacter cryohalolentis K5]
 gi|92393089|gb|ABE74364.1| NADH dehydrogenase (quinone) [Psychrobacter cryohalolentis K5]
          Length = 247

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 76/135 (56%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  + +AI +S  VVT  NP++++ S+I + +  AG+F ++GA F   + +VVY GA++
Sbjct: 13  FYSLAAVAIFASLRVVTQANPVHAILSMIVSLLAIAGIFFVIGAPFAGALEIVVYAGAIM 72

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++ +   E  ++    G++ I      +I      M+     E + +   
Sbjct: 73  VLFVFVIMMLNLGMRNDEREERWLDAGTWAIPTGLTIIIAVVLYAMIGLNHNEAALIGGT 132

Query: 128 GNNVENIGKVLYTQY 142
             + + +G VL+T+Y
Sbjct: 133 TISAKAVGTVLFTKY 147


>gi|303248407|ref|ZP_07334667.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Desulfovibrio fructosovorans JJ]
 gi|302490205|gb|EFL50123.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Desulfovibrio fructosovorans JJ]
          Length = 173

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 54/90 (60%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M      FYL S + +I++ L  T RNP+++V   +  F+  AGLF++LGA    ++ +V
Sbjct: 1  MTALGALFYLLSAVLLIAAGLAATRRNPVHAVCCAVVTFIATAGLFVVLGAPLPGVLEVV 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
          VY GA++V FLFIIM+L + + V      R
Sbjct: 61 VYAGAIMVLFLFIIMLLGLPVGVGAVPAAR 90


>gi|322378674|ref|ZP_08053107.1| NADH dehydrogenase subunit J [Helicobacter suis HS1]
 gi|321148891|gb|EFX43358.1| NADH dehydrogenase subunit J [Helicobacter suis HS1]
          Length = 181

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F+   +  + +VV+  N +Y++ +L  + V  +G F LLGAEF+ ++ ++VYVGAVI
Sbjct: 7   FYFFAIFTLSMALIVVSTSNILYAMSALAASMVFISGFFFLLGAEFLGVVQILVYVGAVI 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           V + F +M  +   EV E   K      LG  F  +L   L   A N        E  ++
Sbjct: 67  VMYAFGMMFFNASEEVIERSHKPWLVYILGGVFALLLVVILGAPALNNYAHHLSAENLQI 126

Query: 125 V---FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           V       NV  +G  ++T+Y    E  G +LL ++IG I   LR     ++++
Sbjct: 127 VTPNLSTTNVHLMGYFVFTKYRIAFEAGGVMLLSALIGGITTALRKSYLSQKEN 180


>gi|8954362|ref|NP_059351.1| NADH dehydrogenase subunit 6 [Cyanidioschyzon merolae]
 gi|3927866|dbj|BAA34654.1| NADH-ubiquinone oxidoreductase chain 6 [Cyanidioschyzon merolae
           strain 10D]
          Length = 204

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 100/181 (55%), Gaps = 18/181 (9%)

Query: 25  VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84
           ++N ++S+  L+  F+NAA L ++L  EF+A++ L+VYVGA+ V FLF+I++L  +++++
Sbjct: 25  LKNSVFSILFLVLIFLNAAALIMMLETEFLAILFLIVYVGAIAVLFLFVIIIL--NVKLS 82

Query: 85  EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL-------------VFKGNNV 131
           E       +G + +      +I     F++     E   L             V+  +N+
Sbjct: 83  EFYYS---IGQYILIGSILGIIFLVQTFLILDTNIEFHFLDNIHNLYPEWNFEVYSQSNI 139

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMV 191
           E +G  LYT Y Y   ++  ILL+++IGAIVL +  R  +KRQ+I  Q+  +  +S+  +
Sbjct: 140 EALGSNLYTNYMYVFILAAIILLIAIIGAIVLTIHQRGYVKRQNILNQVSRDFKDSVYYI 199

Query: 192 K 192
            
Sbjct: 200 N 200


>gi|298246360|ref|ZP_06970166.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter
           racemifer DSM 44963]
 gi|297553841|gb|EFH87706.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter
           racemifer DSM 44963]
          Length = 174

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 13/155 (8%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+  +N +YS  SLI      A  +L LGA F+A++ +++Y GA++V FLF++ ML  D 
Sbjct: 22  VIAFKNAVYSALSLILTLFFLAMFYLQLGAMFIAVVQVLIYAGAIMVLFLFVVTMLTSD- 80

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----------SAEGELSRLVFKGNNV 131
             A+ + +       ++G L   ++V A ++++F           A    S  V    NV
Sbjct: 81  --AQDKGEDRIPWQRYVGSLLGVVLVGALSYLIFKNVSGSPTVLKAGESYSHAVATHGNV 138

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           E  G  L+  Y +P E++  +++++++GA+V   R
Sbjct: 139 EAFGLALFHGYLFPFEVTSLLIVVAILGALVFGRR 173


>gi|229158854|ref|ZP_04286912.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC
           4342]
 gi|228624838|gb|EEK81607.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC
           4342]
          Length = 162

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 4/161 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   +         R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTKHNAGNESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           G +LY++Y  P E+   ILL++++GAI+L    ++D K +D
Sbjct: 122 GTLLYSKYIIPFELISVILLVALVGAIILA---KKDEKEED 159


>gi|33866802|ref|NP_898361.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 8102]
 gi|33639403|emb|CAE08787.1| NADH dehydrogenase I chain 6 (or J) [Synechococcus sp. WH 8102]
          Length = 200

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 23/178 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + S + +  +  VV + N +YS F L   F+  AGL+LLL A FVA   ++VYVGA+ 
Sbjct: 12  FLVLSAVVVTGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLVYVGAIN 71

Query: 68  VFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           V  LF IM+++   D++ +A    +R   G            VC     +       +  
Sbjct: 72  VLILFAIMLVNKREDLKAIAGLNVRRAVSGG-----------VCLGLLALLVRVVLTTPW 120

Query: 125 VFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
              G           IG+ L+T Y  P E++  +LL++MIGAIVL    RRD+   D+
Sbjct: 121 SLPGPAAVGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVL---ARRDVLATDV 175


>gi|257852586|gb|ACV71305.1| NADH dehydrogenase subunit 6 [Endodesmia calophylloides]
          Length = 180

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 27/179 (15%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123
           I     EV       G +G  F            I +L  +       + +++ +     
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGK----- 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            V    N+E +G +LYT Y     +   ILL++MIGAIVL + HR     +KRQDI ++
Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174


>gi|297201631|ref|ZP_06919028.1| NADH dehydrogenase subunit J [Streptomyces sviceus ATCC 29083]
 gi|197710997|gb|EDY55031.1| NADH dehydrogenase subunit J [Streptomyces sviceus ATCC 29083]
          Length = 285

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 97/187 (51%), Gaps = 20/187 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++   +A+I +   V +R  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 21  EAFQFWVLGTVAVIGALCTVFMRKAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVVYT 80

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121
           GA+++ FLF++M++ +    A         G  ++ +L      C   F  ++F+  G  
Sbjct: 81  GAIMMLFLFVVMLVGV---TAADSLTETIKGQRWLALL------CGLGFGILLFAGIGNA 131

Query: 122 SRLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIK 172
           S   F        G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R  R + 
Sbjct: 132 SLKQFNGLTQANAGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALT 191

Query: 173 RQDISKQ 179
           +++++++
Sbjct: 192 QREMAER 198


>gi|81300154|ref|YP_400362.1| NADH dehydrogenase subunit J [Synechococcus elongatus PCC 7942]
 gi|81169035|gb|ABB57375.1| NADH dehydrogenase subunit 6 [Synechococcus elongatus PCC 7942]
          Length = 201

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 19/204 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + +   ++++  VV   N +YS F L   F++ AGL+LLL A FVA   +++Y
Sbjct: 7   VQLVTFIILTAGVVLAALGVVLSSNIVYSAFLLGGVFISIAGLYLLLNASFVAFAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK----KRGFLGSFFIGILA-AELIVCASNFMVFSA 117
           VGAV V  LF IM+++   E   P K    ++G       G+ A   L V ++ + V   
Sbjct: 67  VGAVNVLILFAIMLVN-KREDFRPLKFNWLRKGLTVLVCGGLFALLSLTVISTPWAVTPT 125

Query: 118 EGELSRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            G        G+  +  IG+  ++ Y  P E++  +LL++MIGAIVL    RRD + +D+
Sbjct: 126 PGA------SGDEAIYLIGEHFFSDYLLPFELASVLLLMAMIGAIVL---ARRDFEPEDL 176

Query: 177 SKQLESN---PDNSIVMVKVKSGK 197
                ++   P+ S   +   +GK
Sbjct: 177 ITGAAADLQLPERSREELLTGAGK 200


>gi|326329619|ref|ZP_08195941.1| NADH dehydrogenase I, J subunit [Nocardioidaceae bacterium Broad-1]
 gi|325952615|gb|EGD44633.1| NADH dehydrogenase I, J subunit [Nocardioidaceae bacterium Broad-1]
          Length = 238

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + + +I++  ++  R P+++  SL    V  A ++  L A F+  + +VVY GA++
Sbjct: 3   FVILASVTVIAALGLLFARKPVHAALSLAVVMVGLAMIYATLEAPFLFAVQIVVYTGAIL 62

Query: 68  VFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + FLF+IM++ +D    + E    +  L +     L A LI       + +  G  S   
Sbjct: 63  MLFLFVIMLVGVDTSDTLKETIAGQKVLAALLGIGLGATLIAGVGQASIATMRGLSS--A 120

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
            +G NV+ +  +L+++Y    E +  +L+ + IGA+VL  R R D       KQ +S+  
Sbjct: 121 NEGGNVQRLADLLFSRYVIAFEATSALLITAAIGAMVLAHRERID------PKQSQSDLA 174

Query: 186 NSIVMVKVKSGK 197
              V    KSGK
Sbjct: 175 RKRVADYAKSGK 186


>gi|312139317|ref|YP_004006653.1| NADH dehydrogenase (quinone) chain j nuoj [Rhodococcus equi 103S]
 gi|325676674|ref|ZP_08156349.1| NADH-quinone oxidoreductase subunit J [Rhodococcus equi ATCC 33707]
 gi|311888656|emb|CBH47968.1| NADH dehydrogenase (quinone) chain J NuoJ [Rhodococcus equi 103S]
 gi|325552529|gb|EGD22216.1| NADH-quinone oxidoreductase subunit J [Rhodococcus equi ATCC 33707]
          Length = 276

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 99/187 (52%), Gaps = 11/187 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++    A++ +  VV     +YS   L    +  A L++  GA F+ ++ +VVY 
Sbjct: 24  EAVQFWILGTAAVLGALGVVCAPKAVYSAICLAMTMIVLAVLYIAQGALFLGVVQVVVYT 83

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GAV++ FLF++M++ +D     +E    ++    +     G+L    +  A+  ++ S E
Sbjct: 84  GAVMMLFLFVLMLIGVDSSDSLVETLRGQRIAAVVAGLGFGLLLIGGLGNATVGVLRSGE 143

Query: 119 ----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIK 172
               G        G NVE I ++++ +Y +  E++G +L+ + IGA+VL  R R  R + 
Sbjct: 144 VGFVGLDQANSASGGNVEGIAELVFIRYVWVFEMTGALLITATIGAMVLAHRERFERRLG 203

Query: 173 RQDISKQ 179
           ++++SKQ
Sbjct: 204 QREMSKQ 210


>gi|113475269|ref|YP_721330.1| NADH dehydrogenase subunit J [Trichodesmium erythraeum IMS101]
 gi|110166317|gb|ABG50857.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Trichodesmium erythraeum IMS101]
          Length = 207

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 96/184 (52%), Gaps = 18/184 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + M I ++  VV   N ++S F L   F++ +GL+LLL A+FVA   +++YVGAV 
Sbjct: 12  FVILAVMMIAAALGVVLFSNIVHSAFLLGGVFMSISGLYLLLNADFVATAQVLIYVGAVN 71

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSAEGELS 122
           V  LF IM+++      +    +    ++F  +  A  +VC   F     MV S+   + 
Sbjct: 72  VLILFAIMLVN------KREDFKALPNAWFRKV--ATGLVCFGLFALLSTMVLSSSWSIP 123

Query: 123 RL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            +    + +++  IGK  +T +  P E++   LL++M+GAI+L    RRDI   ++   +
Sbjct: 124 VVGNATRESSIVLIGKHFFTDFLLPFELASVCLLIAMVGAIIL---ARRDILPDEVPTNV 180

Query: 181 ESNP 184
              P
Sbjct: 181 SQTP 184


>gi|71065159|ref|YP_263886.1| NADH dehydrogenase I, J subunit [Psychrobacter arcticus 273-4]
 gi|71038144|gb|AAZ18452.1| probable NADH dehydrogenase I, J subunit [Psychrobacter arcticus
           273-4]
          Length = 239

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 76/135 (56%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  + +AI +S  VVT  NP++++ S+I + +  AG+F ++GA F   + +VVY GA++
Sbjct: 13  FYSLAAVAIFASLRVVTQANPVHAILSMIVSLLAIAGIFFVIGAPFAGALEIVVYAGAIM 72

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++ +   E  ++    G++ I      +I      M+     E + +   
Sbjct: 73  VLFVFVIMMLNLGMRNDEREERWLDAGTWAIPTGLTIIIAVVLYAMIGLNHNEAAVIGGS 132

Query: 128 GNNVENIGKVLYTQY 142
             + + +G VL+T+Y
Sbjct: 133 TISAKAVGTVLFTKY 147


>gi|322506936|gb|ADX02390.1| nuoJ [Acinetobacter baumannii 1656-2]
 gi|323516803|gb|ADX91184.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
          baumannii TCDC-AB0715]
          Length = 163

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 53/76 (69%)

Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
          MAI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++V F+F+
Sbjct: 1  MAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIMVLFVFV 60

Query: 74 IMMLDIDIEVAEPRKK 89
          +MML++     E  +K
Sbjct: 61 VMMLNLGQHTVEQERK 76


>gi|253989008|ref|YP_003040364.1| NADH dehydrogenase subunit J [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780458|emb|CAQ83620.1| nadh dehydrogenase i chain j (nadh-ubiquinone oxidoreductase chain
           j) [Photorhabdus asymbiotica]
          Length = 181

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 92/167 (55%), Gaps = 8/167 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    +AI+++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5   FYTAGLVAILATIRVITHTNPVHALLYLIVSLLALSAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPR----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122
           V F+F++MML++   V E      K R ++G    GIL+A L+V     ++  + G ++ 
Sbjct: 65  VLFVFVVMMLNLGKSVVEQERVWLKPRTWIGP---GILSAVLLVILVYTIINVSHGNIAD 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            +  +  + + +G  L+  Y   +E++  +LL  M+ A  +   H++
Sbjct: 122 NITGEVISAKEVGISLFGPYVLAVELASLLLLAGMVVAYHIGREHKQ 168


>gi|326799009|ref|YP_004316828.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sphingobacterium sp. 21]
 gi|326549773|gb|ADZ78158.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sphingobacterium sp. 21]
          Length = 165

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 101/173 (58%), Gaps = 20/173 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +F++I  S +V+  +NP++SV  L+  F      ++LL A+F+A++  +VY+GA++
Sbjct: 4   FYFVAFLSIFFSLMVIITKNPVHSVLYLVITFFTFTVHYILLNAQFLAVVNFIVYMGAIM 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL------ 121
           V FLF++M+L+++ +  EP K      S  + ++ A   +C    ++ +  G +      
Sbjct: 64  VLFLFVLMLLNLNKD-TEPMK------SVLVKVMGAVAGMC----LLVTVAGSIRAIEVS 112

Query: 122 SRLVFKGNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
             L+ K  +   V N+GKVL+ ++  P EIS  +LL +M+GA++L  + ++ I
Sbjct: 113 DPLILKSPDIGLVGNLGKVLFNEFLLPFEISSLLLLTAMVGAVLLAKKEQKSI 165


>gi|260598697|ref|YP_003211268.1| NADH:ubiquinone oxidoreductase subunit J [Cronobacter turicensis
           z3032]
 gi|260217874|emb|CBA32418.1| NADH-quinone oxidoreductase subunit J [Cronobacter turicensis
           z3032]
          Length = 187

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 104/185 (56%), Gaps = 16/185 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY GA++
Sbjct: 5   FYICALVAVLTTARVITHSNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFI--GILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++   V   R++R +L    +I  GIL+A L+V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLGDSVV--RQEREWLKPQIWIGPGILSAVLLVV----IVYAILG-VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
             +GN +  + +G  L+  Y   +E++  +LL  ++ A  L     R+ K  D+      
Sbjct: 118 GIEGNPISAKAVGTDLFKTYVLAVELASMLLLAGLVVAFHL----GREEKAGDVVSVRGG 173

Query: 183 NPDNS 187
            P ++
Sbjct: 174 APSDA 178


>gi|254480852|ref|ZP_05094098.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           protein [marine gamma proteobacterium HTCC2148]
 gi|214038647|gb|EEB79308.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           protein [marine gamma proteobacterium HTCC2148]
          Length = 169

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 14/176 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FY+ + +A+ S+   +T  N  +++  LI + +  A +F L+GA F A + +V+Y
Sbjct: 1   MLATLFYIAALIALTSTMAALTRANAAHALIYLIVSLLAVAVMFFLMGAPFAAALEVVIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS--FFIGILAAELIVCASNFMVFSAEGE 120
            GA++V F+F+IMML++  +  E R++    G   F  G +AA L++     MV    G+
Sbjct: 61  AGAIMVLFVFVIMMLNLG-DTGEDREREWLAGRNWFVPGAMAALLLI--EMLMVL---GD 114

Query: 121 LSRLVFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
               V  GN V  + +G  L+  Y   +EI+  +LL S++GA  L    RR I R+
Sbjct: 115 FQG-VTSGNAVSPKAVGIRLFGPYLLAVEIASMLLLSSLVGAYHL---GRRFIVRR 166


>gi|256593098|gb|ACV03505.1| NADH dehydrogenase subunit 6 [Acanella eburnea]
 gi|256593101|gb|ACV03507.1| NADH dehydrogenase subunit 6 [Orstomisis crosnieri]
 gi|256593104|gb|ACV03509.1| NADH dehydrogenase subunit 6 [Gorgonisis sp. SCF-2009]
 gi|256593107|gb|ACV03511.1| NADH dehydrogenase subunit 6 [Pteronisis incerta]
 gi|256593110|gb|ACV03513.1| NADH dehydrogenase subunit 6 [Plexipomisis sp. SCF-2009]
 gi|256593113|gb|ACV03515.1| NADH dehydrogenase subunit 6 [Primnoisis cf. deliculata SCF-2009]
          Length = 90

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 59/86 (68%), Gaps = 7/86 (8%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MNSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK 88
          VGA+ + FLF+IM+      + +P K
Sbjct: 60 VGAIAILFLFVIML------IQQPNK 79


>gi|242310563|ref|ZP_04809718.1| predicted protein [Helicobacter pullorum MIT 98-5489]
 gi|239522961|gb|EEQ62827.1| predicted protein [Helicobacter pullorum MIT 98-5489]
          Length = 187

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 8/171 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY FS + +    +VVT +N +Y++ +L    +  +G F LLGAEF+ ++ +VVY 
Sbjct: 3   EAIAFYTFSALTLAMFLIVVTTKNILYALSALAAGMIFVSGFFFLLGAEFLGVVQIVVYT 62

Query: 64  GAVIVFFLFIIMMLDI----DIEVAEPRKKRGFLGSFFIGILAAELI-VCASNFMVFSAE 118
           GAVI  + F +M  D     +  +  P+     +G   + ++   +  + A N    S +
Sbjct: 63  GAVIALYAFAMMFFDAQKLQNERIENPKLLFLLVGLGALLLVLIVVAPIIAQNLSQISPQ 122

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             +   V    NV+ +G VL+T++  P EI+  +LL++MI  I+L  +  R
Sbjct: 123 IPVKEEV---GNVQMVGYVLFTKFLIPFEIAAIMLLVAMIAGIILAGKGMR 170


>gi|284050277|ref|ZP_06380487.1| NADH dehydrogenase subunit J [Arthrospira platensis str. Paraca]
 gi|291568239|dbj|BAI90511.1| NADH dehydrogenase subunit 6 [Arthrospira platensis NIES-39]
          Length = 206

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 19/174 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F L + M I S+  VV ++N +YS F L   F++ AGL+LLL A+FVA   +++YV
Sbjct: 8   QVVSFGLLTIMMISSALGVVLLKNIVYSAFLLGGVFMSMAGLYLLLNADFVAAAQVLIYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNF-----MVFSA 117
           G+V V  LF IM+++         K++ F      G+   A  +VC   F     MV S 
Sbjct: 68  GSVNVLILFGIMLVN---------KQQDFRVLPNAGLRQIATAVVCVGLFALLSTMVLST 118

Query: 118 EGELSRLVFK-GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              ++  V    ++   IG+  +T +  P E++   LL++M+GAIVL    RRD
Sbjct: 119 PWSVTAAVVSIESSAIAIGEHFFTDFLLPFELASVFLLMAMVGAIVL---ARRD 169


>gi|256390060|ref|YP_003111624.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora
           acidiphila DSM 44928]
 gi|256356286|gb|ACU69783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora
           acidiphila DSM 44928]
          Length = 195

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   +   ++ L VTVRN +++   L+ A    AG +LLL AEFVA + +++YVGAV 
Sbjct: 17  FVLVGLLTFGAAVLTVTVRNLVHAALWLVVALGGLAGCYLLLAAEFVAWVQVLIYVGAVA 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V  LF +M+    I             +  +G+  A ++V      V +   +  R V  
Sbjct: 77  VLLLFGLMLTRAPIGRTTELDSGNRWAAAVVGLATAGVLVTVIGDAVRTTWFDPRRNVVN 136

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
           G   + +G  L+  +  P E+   +LL +++GAIVL         R+D+S   E  P
Sbjct: 137 G-TAKAVGSSLFRYWVLPFELLSVLLLAALVGAIVL--------SRRDVSADAEGAP 184


>gi|332971170|gb|EGK10134.1| NADH-quinone oxidoreductase subunit J [Psychrobacter sp.
           1501(2011)]
          Length = 241

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    +AII+S  V+ + NP++++ S+I   +  AG+F +LGA F   + ++VY GA++
Sbjct: 15  FYALGLVAIIASLRVIMLANPVHAILSMIVTLLALAGIFFILGAPFAGALQVIVYAGAIL 74

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103
           V F+F+IMML++  +  E   K  +L S    + AA
Sbjct: 75  VLFVFVIMMLNLGTKNEERESK--WLSSDTWAVPAA 108


>gi|197116571|ref|YP_002136998.1| NADH dehydrogenase I subunit J [Geobacter bemidjiensis Bem]
 gi|197085931|gb|ACH37202.1| NADH dehydrogenase I, J subunit [Geobacter bemidjiensis Bem]
          Length = 160

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 11/168 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+ + + +I +   +T R  + ++  L+ +F   A +F LLGA FVA + +++Y
Sbjct: 1   MERTIFYILAAVTVIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPFVAALEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GA++V FLF+IMM    +EVA P K  K  F   +     A  L++     +     G+
Sbjct: 61  AGAIMVLFLFVIMM----VEVASPEKLAKPAFSDWW----PALVLVLVVVASLTVLVTGQ 112

Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              +   G   V    +VL+T+Y   +E+    LL +++GA+ L  R 
Sbjct: 113 APPVPGAGAQTVRQFSQVLFTRYGVAIELVSMQLLFALVGALYLGRRR 160


>gi|229821700|ref|YP_002883226.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beutenbergia
           cavernae DSM 12333]
 gi|229567613|gb|ACQ81464.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beutenbergia
           cavernae DSM 12333]
          Length = 286

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 96/174 (55%), Gaps = 4/174 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + + +I++  ++  R  +++  S++F  V  A L+  L A F+ +  +VVY 
Sbjct: 11  EAVLFWVLAPLMVIAALGLLFARKAVHAAISVVFVMVALAFLYTALEAPFLGVAQVVVYT 70

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV+  F+F++M++ +D    V E  + + ++   F   LA+ LI   +   +  A+G L
Sbjct: 71  GAVMTLFVFVLMLVGVDASDSVVETLQGQRWIAVLFGVGLASVLIGVIATATLPDAQG-L 129

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           + +   GN V  + ++++ Q+ +  E+ G +L+ + +GAI L  R R   KR  
Sbjct: 130 AEVNTDGNPV-GVARLIFGQFVFAFELVGALLITAALGAITLTHRERLGRKRDQ 182


>gi|91200371|emb|CAJ73417.1| strongly similar to NADH dehydrogenase I chain J [Candidatus
           Kuenenia stuttgartiensis]
          Length = 189

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 101/183 (55%), Gaps = 16/183 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +A++S+ +V+T +N ++++  LI + ++ + +F +LGA F+A + +++Y GA++
Sbjct: 10  FYIASIVAVVSTLMVITRKNAVHALLYLIVSLLSVSIIFFILGAPFMAALEVIIYAGAIM 69

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  E A    +      + + ++   +++     ++    G+      +
Sbjct: 70  VLFIFVIMMLNLGSEAARMENQLLNPKMWIVPVILTLILIIEFIIVLIKINGQ------E 123

Query: 128 GNNV----ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL-ES 182
            N+V    + +G  L+  Y   +E++  +LL  ++GA      H    K++ + + L E+
Sbjct: 124 YNSVIISPKQVGISLFGTYLLGVELAAMLLLAGIVGA-----YHLGKEKKKILHRYLAET 178

Query: 183 NPD 185
            PD
Sbjct: 179 EPD 181


>gi|262195157|ref|YP_003266366.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliangium
           ochraceum DSM 14365]
 gi|262078504|gb|ACY14473.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliangium
           ochraceum DSM 14365]
          Length = 282

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 16/195 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V  SL F+LF+ + +  S  V+T RN I +V  ++  F   A ++ +L A F+A I ++V
Sbjct: 90  VGASLMFWLFALLTVGGSIFVITRRNLISAVMGMVGTFFAIAAVYTMLFAHFLAAIQVLV 149

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAEG 119
           Y GA++V F+F+IM+L+   +  EP  + G +G+     L A L+  + A  + V  +  
Sbjct: 150 YAGAIMVLFVFVIMILNKPED--EPWGRSGIIGNVLGSALVAYLLWRIGAVLWAVPVSPA 207

Query: 120 EL------------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +L            +  V    +   IG+ L+  Y +P E    +LL++++GA+ +   H
Sbjct: 208 QLLPPGGVTVVTGVTETVHDYGSTMAIGQNLFRDYLFPFEAVSLVLLIAVVGALAVARPH 267

Query: 168 RRDIKRQDISKQLES 182
                  +  +   +
Sbjct: 268 EAPPPAMEAEQTTNA 282


>gi|320353967|ref|YP_004195306.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
 gi|320122469|gb|ADW18015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
          Length = 187

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 3/179 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF   + M I S  L +++RN ++SV  ++  F + AGL+L L AEF+A + ++VY GA+
Sbjct: 6   FFGYCALMIIASGILAISLRNLVHSVLMVLVLFFHMAGLYLTLNAEFLAAVQIIVYAGAI 65

Query: 67  IVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RL 124
           +V +LF++ ++ +  E+  +      +LG      LA  L+     F     +G  S   
Sbjct: 66  LVLYLFVLFLVSLREELHLDAFVPGAWLGRIIAVGLAVGLLYVIPAF-TLGEKGTWSVSA 124

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           + +  + + +G+ LY+ Y  P EI+G ILL+++IG +VL  R    +   D     E  
Sbjct: 125 IRELTHTKALGQELYSAYLLPFEIAGLILLVALIGGLVLARREEVPLPGADADPSPEHK 183


>gi|11466755|ref|NP_039351.1| NADH dehydrogenase subunit 6 [Marchantia polymorpha]
 gi|128802|sp|P06266|NU6C_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|11726|emb|CAA28137.1| unnamed protein product [Marchantia polymorpha]
          Length = 191

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 25/188 (13%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++F +L S + I+ S  V+ + N +YS   L F FV  + L+LLL A+FVA   +++YV
Sbjct: 9   ETIFLFLESGL-ILGSLGVILLTNIVYSALFLGFVFVCISLLYLLLNADFVAAAQILIYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSAEGE 120
           GAV V  +F +M+++        ++   F   + IG     L +C S F++   F +   
Sbjct: 68  GAVNVLIIFAVMLIN-------KKQYSNFFVYWTIGD-GITLTLCTSIFLLLNNFISNTS 119

Query: 121 LSR--------LVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            S+        LV K     N V +IG  L T++  P E+   ILL+++IGAI L  R +
Sbjct: 120 WSKIFLMTKPNLVVKDIILINTVRHIGSELLTEFLLPFELMSIILLVALIGAITLARREK 179

Query: 169 R-DIKRQD 175
           + ++++ D
Sbjct: 180 KIELEKND 187


>gi|83815364|ref|YP_445567.1| NADH dehydrogenase i, j subunit [Salinibacter ruber DSM 13855]
 gi|83756758|gb|ABC44871.1| NADH dehydrogenase i, j subunit [Salinibacter ruber DSM 13855]
          Length = 207

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 84/148 (56%), Gaps = 3/148 (2%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           ++  RNP+ S   L+      AGL+L L A F+ +I ++VY GA++V FLF+IM+L++  
Sbjct: 59  MIIARNPVSSALWLVLNLFCIAGLYLTLNASFIGVIQILVYAGAIMVLFLFVIMLLNLSA 118

Query: 82  EVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
                  +   +G F +G  +L+  L V A  F +   +   +    +  +  ++G++L+
Sbjct: 119 LPELEEIEWASIGGFAVGLVLLSQLLYVVALQFEL-GVDPIGAEAAAEAGSAASLGEILF 177

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRH 167
           T+YA  L+++G +LL + +GA++L  R 
Sbjct: 178 TRYALHLQVAGILLLAATVGAVLLAQRR 205


>gi|294507450|ref|YP_003571508.1| NADH dehydrogenase I, J subunit [Salinibacter ruber M8]
 gi|294343778|emb|CBH24556.1| NADH dehydrogenase I, J subunit [Salinibacter ruber M8]
          Length = 169

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 84/149 (56%), Gaps = 5/149 (3%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82
           +  RNP+ S   L+      AGL+L L A F+ +I ++VY GA++V FLF+IM+L++   
Sbjct: 22  IIARNPVSSALWLVLNLFCIAGLYLTLNASFIGVIQILVYAGAIMVLFLFVIMLLNLSAL 81

Query: 83  VAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT 140
                 +   +G F +G  +L+  L V A  F +   +   +    +  +  ++G++L+T
Sbjct: 82  PELEEIEWASIGGFAVGLVLLSQLLYVVALQFEL-GVDPIGAEAAAEAGSAASLGEILFT 140

Query: 141 QYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +YA  L+++G +LL + +GA+  +L  RR
Sbjct: 141 RYALHLQVAGILLLAATVGAV--LLAQRR 167


>gi|318057834|ref|ZP_07976557.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces sp.
           SA3_actG]
 gi|318077144|ref|ZP_07984476.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces sp.
           SA3_actF]
          Length = 304

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V +   ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 25  EAVQFWILGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 84

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVFSAE 118
           GAV++ FLF++M++ +    A    K    G  ++ +L      A L+    N  V   +
Sbjct: 85  GAVMMLFLFVVMLVGV---TAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQ 141

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDI 176
           G  +     G NV+ + + ++T Y +  EI+G +L+ + +GA+VL  R R  R + ++++
Sbjct: 142 G--TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTERALNQREM 199

Query: 177 SKQ 179
           +++
Sbjct: 200 AEK 202


>gi|302521203|ref|ZP_07273545.1| NADH dehydrogenase subunit J [Streptomyces sp. SPB78]
 gi|302430098|gb|EFL01914.1| NADH dehydrogenase subunit J [Streptomyces sp. SPB78]
          Length = 304

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V +   ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 25  EAVQFWILGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 84

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVFSAE 118
           GAV++ FLF++M++ +    A    K    G  ++ +L      A L+    N  V   +
Sbjct: 85  GAVMMLFLFVVMLVGV---TAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQ 141

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDI 176
           G  +     G NV+ + + ++T Y +  EI+G +L+ + +GA+VL  R R  R + ++++
Sbjct: 142 G--TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTERALNQREM 199

Query: 177 SKQ 179
           +++
Sbjct: 200 AEK 202


>gi|254282451|ref|ZP_04957419.1| NADH dehydrogenase i chain j [gamma proteobacterium NOR51-B]
 gi|219678654|gb|EED35003.1| NADH dehydrogenase i chain j [gamma proteobacterium NOR51-B]
          Length = 169

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 94/163 (57%), Gaps = 13/163 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L FYL + +A+ ++ + +T  N  +++  LI + +  A +F +LGA F A + +++Y
Sbjct: 1   MTVLLFYLTAALAVFATVVALTRANAAHALIYLILSLLAVAVMFFMLGAPFAAALEVLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS-FFI--GILAAELIVCASNFMVFSAEG 119
            GA++V F+F+IMML++    A   ++RG+L +  +I  G+L   L+V     +VF   G
Sbjct: 61  AGAIMVLFVFVIMMLNLGD--AGEEQERGWLDARLWIVPGLLTTVLLV--EMLLVFGESG 116

Query: 120 ELSRLVFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGA 160
             +     G++V  + +G  LY  Y   +E++  +L+ +++GA
Sbjct: 117 VTT----SGHSVSPKEVGISLYGPYVLAVELASMLLMAALVGA 155


>gi|209522710|ref|ZP_03271268.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arthrospira
           maxima CS-328]
 gi|209496759|gb|EDZ97056.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arthrospira
           maxima CS-328]
          Length = 208

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 21/175 (12%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F L + M I S+  VV ++N +YS F L   F++ AGL+LLL A+FVA   +++YV
Sbjct: 10  QVVSFGLLTIMMIGSALGVVLLKNIVYSAFLLGGVFMSMAGLYLLLNADFVAAAQVLIYV 69

Query: 64  GAVIVFFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFS 116
           G+V V  LF IM+++   D  V      R            A  +VC   F     MV S
Sbjct: 70  GSVNVLILFGIMLVNKQQDFRVLPNAGLRQI----------ATAVVCVGLFALLSTMVLS 119

Query: 117 AEGELSRLVFK-GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
               ++  V    ++   IG+  +T +  P E++   LL++M+GAIVL    RRD
Sbjct: 120 TPWSVTTTVVTIESSAIAIGEHFFTDFLLPFELASVFLLMAMVGAIVL---ARRD 171


>gi|86158999|ref|YP_465784.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775510|gb|ABC82347.1| NADH dehydrogenase subunit J [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 211

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + FY  + + +  +  V   RN +YS F L+ A + A  L++LL A+FVA+  L++Y
Sbjct: 47  LPDVLFYALAVLTVAGAAGVALSRNILYSTFGLLVALLGAGSLYVLLSADFVAVTQLLIY 106

Query: 63  VGAVIVFFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +G V+V  LF +M+ +   DI V+            F+   A   ++ A   +     G 
Sbjct: 107 IGGVLVLILFAVMLTNRITDINVSNTSFGLFGGFLLFV---AGAPVLLAVALLTPWQAGA 163

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            + L       + IG    +++  P E++  +LL +++GAIV+    R++IK
Sbjct: 164 AAPL---APTTQAIGDAFLSRWLLPFEVASLVLLSTLVGAIVI---ARKEIK 209


>gi|15616782|ref|NP_239994.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|219681537|ref|YP_002467922.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|219682093|ref|YP_002468477.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|257471218|ref|ZP_05635217.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. LSR1
          (Acyrthosiphon pisum)]
 gi|11133972|sp|P57260|NUOJ_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
          Full=NADH dehydrogenase I subunit J; AltName:
          Full=NDH-1 subunit J
 gi|25285206|pir||H84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain J [imported]
          - Buchnera sp. (strain APS)
 gi|10038845|dbj|BAB12880.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|219621826|gb|ACL29982.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|219624380|gb|ACL30535.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|311085904|gb|ADP65986.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. LL01
          (Acyrthosiphon pisum)]
 gi|311086477|gb|ADP66558.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. TLW03
          (Acyrthosiphon pisum)]
 gi|311087058|gb|ADP67138.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. JF99
          (Acyrthosiphon pisum)]
 gi|311087615|gb|ADP67694.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. JF98
          (Acyrthosiphon pisum)]
          Length = 170

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 61/91 (67%), Gaps = 4/91 (4%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ SF A++S+F V+  +N +YS+  LI + ++ AG+F  LGA F   + +++Y GA+I
Sbjct: 5  FYVCSFAAVVSTFFVIIQKNAVYSLVYLIISLLSIAGVFFSLGAFFAGSLEVIIYAGAII 64

Query: 68 VFFLFIIMMLDI----DIEVAEPRKKRGFLG 94
          V F+F+IMML+I    ++E A   K R ++G
Sbjct: 65 VLFVFVIMMLNISDKYNLEEAHYLKPRFWIG 95


>gi|315465332|emb|CBQ72567.1| NADH:ubiquinone oxidoreductase chain 6 [Sporisorium reilianum]
          Length = 226

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%)

Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
          AI+S  LV+T +NP+ SV  LI  FVN AG  +LLG  F+ +  L+VYVGAV V FLF+I
Sbjct: 13 AILSGILVITSKNPVISVLFLISVFVNVAGYLVLLGVGFIGISYLIVYVGAVTVLFLFVI 72

Query: 75 MMLDIDIE 82
          MML++ + 
Sbjct: 73 MMLNLQLT 80


>gi|295837116|ref|ZP_06824049.1| NADH dehydrogenase I, J subunit [Streptomyces sp. SPB74]
 gi|197697227|gb|EDY44160.1| NADH dehydrogenase I, J subunit [Streptomyces sp. SPB74]
          Length = 283

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V +   ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 25  EAVQFWVLGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 84

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVFSAE 118
           GAV++ FLF++M++ +    A    K    G  ++ +L      A L+    N  V   +
Sbjct: 85  GAVMMLFLFVVMLVGV---TAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQ 141

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDI 176
           G  +     G NV+ + + ++T Y +  EI+G +L+ + +GA+VL  R R  R + ++++
Sbjct: 142 G--TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTERALNQREM 199

Query: 177 SKQ 179
           +++
Sbjct: 200 AEK 202


>gi|145596567|ref|YP_001160864.1| NADH dehydrogenase subunit J [Salinispora tropica CNB-440]
 gi|145305904|gb|ABP56486.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora
           tropica CNB-440]
          Length = 256

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 26/209 (12%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +A+I +  +V  RN ++S   L+   +     ++L    F+ ++ ++VY 
Sbjct: 17  EAVTFWILAPLALIGAIGMVAARNAVHSALMLVLTMLCLGIFYVLQAGPFIGVVQIIVYT 76

Query: 64  GAVIVFFLFIIMMLD---IDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNF 112
           GA+++ FLF++M++     D  +   R +R        GF G    G+  A     A   
Sbjct: 77  GAIMMLFLFVLMLVGRGASDSLIETLRGQRIAALVLGVGFAGLVGTGMYRALAGSTAVGL 136

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
              +AEG          NV+ I ++L+T+Y    E++  +L+ + +GA+VL    RR   
Sbjct: 137 TTANAEG----------NVQGIARLLFTKYVLAFELTSALLITAAVGAMVLAHIERRRED 186

Query: 173 RQDISKQLES--NPDNSIVMVKVKSGKGI 199
           R D    +++   P N       K G G+
Sbjct: 187 RMDQVATMKARFRPGN---YPGPKPGPGV 212


>gi|78183864|ref|YP_376298.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9902]
 gi|116071524|ref|ZP_01468792.1| NADH dehydrogenase subunit J [Synechococcus sp. BL107]
 gi|78168158|gb|ABB25255.1| NADH dehydrogenase I chain 6 [Synechococcus sp. CC9902]
 gi|116065147|gb|EAU70905.1| NADH dehydrogenase subunit J [Synechococcus sp. BL107]
          Length = 200

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 23/178 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + S + +  +  VV + N +YS F L   F+  AGL+LLL A FVA   +++YVGA+ 
Sbjct: 12  FLVLSAVVVTGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVMIYVGAIN 71

Query: 68  VFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           V  LF IM+++   D++ +A    +R   G            VC     +       +  
Sbjct: 72  VLILFAIMLVNKREDLKAIANLTTRRIVSGG-----------VCLGLLALLVRVVVTTPW 120

Query: 125 VFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
              G           IG+ L+T Y  P E++  +LL++MIGAIVL    RRD+   D+
Sbjct: 121 SLPGPAAVGEEATARIGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVLANDV 175


>gi|302035617|ref|YP_003795939.1| NADH-quinone oxidoreductase membrane subunit J [Candidatus
           Nitrospira defluvii]
 gi|300603681|emb|CBK40012.1| NADH-quinone oxidoreductase, membrane subunit J [Candidatus
           Nitrospira defluvii]
          Length = 174

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  +FF  F+ ++I++  L V ++NP+    +L+   ++ +GLF+LL AEF+  + ++VY
Sbjct: 1   MAFVFFAYFAVVSIVAGILTVALKNPVQCGLALLALLLHVSGLFVLLNAEFLWAVQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++V +LF++M+L++  +      K  + L    IG+     ++  S F     +   
Sbjct: 61  AGAILVLYLFVLMLLNLKTDDRYFHAKAPYLLAPAVIGLAYLLFLLVRSPFGGSRGDAST 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           + ++  G +   IG  +++ Y    EI G  L  +++GAIVL    +    R+D
Sbjct: 121 AAILING-DAHAIGIKMFSDYLLQFEIIGVFLTGAIVGAIVLAKTPKSIETRRD 173


>gi|218886694|ref|YP_002436015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757648|gb|ACL08547.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 168

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 17/177 (9%)

Query: 1   MVMQSLFFYLFSFMAII-SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           M   ++  + F F+ I+   F+ V   + + ++  L+   +  AG++LLL A F+A + +
Sbjct: 1   METPAILAFAFYFLVIVVGCFMAVGCASLVRALVGLVATLLGVAGMYLLLNAPFMAFMQI 60

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCASNFM 113
           ++YVGA+ V   F +M+   D E  E      PR  +G L +   G L A +++      
Sbjct: 61  LIYVGAICVLIFFALMLARADAEGDEADPAPAPRTFKGVLAAMLPGTLLAPILMLHPT-- 118

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                   S+++     +  +G+ L   Y  P E+   +LL+SM GA VL++  RRD
Sbjct: 119 -------ASKMIPAEVPLAELGRRLMEDYVLPFELISMVLLISMAGA-VLLVWERRD 167


>gi|159039966|ref|YP_001539219.1| NADH dehydrogenase subunit J [Salinispora arenicola CNS-205]
 gi|157918801|gb|ABW00229.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora
           arenicola CNS-205]
          Length = 256

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 100/209 (47%), Gaps = 26/209 (12%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +A++ +  +V  RN ++S   L+   +     +++    F+ ++ ++VY 
Sbjct: 17  EAVTFWILAPLALLGAIGMVAARNAVHSALWLVLTMLCLGVFYVVQAGPFIGLVQIIVYT 76

Query: 64  GAVIVFFLFIIMMLD---IDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNF 112
           GA+++ FLF++M++     D  +   R +R        GF G    G+  A     A+  
Sbjct: 77  GAIMMLFLFVLMLVGRGASDSLIETLRGQRIAALVLGIGFAGLVGTGLYRALAGGTAAGL 136

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
              +AEG          NV+ + ++L+T+Y    E++  +L+ + +GA+VL    RR   
Sbjct: 137 TAANAEG----------NVQGVARLLFTKYVLAFELTSALLITAAVGAMVLAHVERRRED 186

Query: 173 RQDISKQLES--NPDNSIVMVKVKSGKGI 199
           R D    +++   P N       K G G+
Sbjct: 187 RMDQVATMKARFRPGN---YPGPKPGPGV 212


>gi|86606291|ref|YP_475054.1| NADH dehydrogenase subunit J [Synechococcus sp. JA-3-3Ab]
 gi|86554833|gb|ABC99791.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6
           [Synechococcus sp. JA-3-3Ab]
          Length = 202

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 22/204 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S MAI  +  VV   N +YS F L   F++ AGL+LLL A+FVA   +++YV
Sbjct: 8   QLVTFGVLSAMAIGFALGVVWAPNIVYSGFLLGGVFLSMAGLYLLLNADFVAAAQVLIYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSAE 118
           GAV V  LF IM+++     A P K    LG    G+ AA   VC   F     M  +  
Sbjct: 68  GAVNVLILFAIMLVNRRYTFA-PLK----LGWLRNGVTAA---VCLGLFALLTAMALNTP 119

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDI 176
            +L   +   ++   +G   ++ Y  P E++  +LL+++IGAIVL  R       +  D+
Sbjct: 120 WQLEP-IQPTSSALVMGGHFFSDYLLPFELASVLLLMALIGAIVLARREFVVPQAQEGDL 178

Query: 177 S------KQLESNPDNSIVMVKVK 194
           S       QLES  +    +V  +
Sbjct: 179 SLLERARPQLESESERPAELVSTR 202


>gi|254391146|ref|ZP_05006353.1| NADH dehydrogenase subunit J [Streptomyces clavuligerus ATCC 27064]
 gi|197704840|gb|EDY50652.1| NADH dehydrogenase subunit J [Streptomyces clavuligerus ATCC 27064]
          Length = 296

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A++ +   + ++  ++S   L    V  A  +L  GA F+ ++ +VVY 
Sbjct: 10  EAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVVQIVVYT 69

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFF---IGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +     + E  K + +L +      G+L   L+    N  +    
Sbjct: 70  GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVL---LVAGLGNASLNEFN 126

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    +
Sbjct: 127 GLGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERTEQARTQREQ 186

Query: 179 QLE 181
             E
Sbjct: 187 AEE 189


>gi|53804531|ref|YP_113812.1| NADH dehydrogenase I, J subunit [Methylococcus capsulatus str.
           Bath]
 gi|53758292|gb|AAU92583.1| NADH dehydrogenase I, J subunit [Methylococcus capsulatus str.
           Bath]
          Length = 164

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 92/164 (56%), Gaps = 15/164 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FYL + +A+ ++F+VV   N ++++  LI + + +  +F LLGA F A++ +++Y
Sbjct: 1   MELILFYLSALVAVAATFMVVIQCNTVHALLYLIVSLLASGFIFYLLGAFFAAVLEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFS 116
            GA+IV F+F++MML++  +  E  ++R +L     GI      +CA  F      ++ S
Sbjct: 61  AGAIIVLFVFVVMMLNLGSKTIE--QERQWLCP---GIWHGPAALCAILFAELLFILMRS 115

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
              E  R+V    + + +G  L+  Y   +E +  +LL  ++GA
Sbjct: 116 GTHEAGRIV----DSKALGIALFGPYLLAVETASMLLLAGLVGA 155


>gi|294814403|ref|ZP_06773046.1| NADH-quinone oxidoreductase subunit J [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442793|ref|ZP_08217527.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327002|gb|EFG08645.1| NADH-quinone oxidoreductase subunit J [Streptomyces clavuligerus
           ATCC 27064]
          Length = 305

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A++ +   + ++  ++S   L    V  A  +L  GA F+ ++ +VVY 
Sbjct: 19  EAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVVQIVVYT 78

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFF---IGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++ +     + E  K + +L +      G+L   L+    N  +    
Sbjct: 79  GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVL---LVAGLGNASLNEFN 135

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    +
Sbjct: 136 GLGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERTEQARTQREQ 195

Query: 179 QLE 181
             E
Sbjct: 196 AEE 198


>gi|307131806|ref|YP_003883822.1| NADH:ubiquinone oxidoreductase membrane subunit J [Dickeya dadantii
           3937]
 gi|306529335|gb|ADM99265.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Dickeya
           dadantii 3937]
          Length = 183

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 94/178 (52%), Gaps = 11/178 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY GA++
Sbjct: 5   FYATAIIAVLATLRVITHTNPVHALLYLIVSLLAVAGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSRLVF 126
           V F+F++MML++   V E ++K     S ++G     LI+ A     + S  G+      
Sbjct: 65  VLFVFVVMMLNLGNSVDE-QEKLWLKPSVWVGPGVLSLILLAIIVKGILSVTGQ----NI 119

Query: 127 KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
            GN  + + +G  L+  Y   +E++  +LL  ++ A  +    +R     K QD  K+
Sbjct: 120 AGNIVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGELIAKDQDADKK 177


>gi|152971208|ref|YP_001336317.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895797|ref|YP_002920533.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae NTUH-K2044]
 gi|262043320|ref|ZP_06016449.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330003564|ref|ZP_08304679.1| NADH-quinone oxidoreductase subunit J [Klebsiella sp. MS 92-3]
 gi|150956057|gb|ABR78087.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238548115|dbj|BAH64466.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039344|gb|EEW40486.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536904|gb|EGF63203.1| NADH-quinone oxidoreductase subunit J [Klebsiella sp. MS 92-3]
          Length = 184

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 100/185 (54%), Gaps = 20/185 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  VVT  NP++++  LI + +  AG+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVVTHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++   E+ + RK        +IG  IL+A L+V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLGGTEIEQERKW--LQPGIWIGPAILSAVLLVV----IVYAILG-INDQ 117

Query: 125 VFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G   N + +G  L+  Y   +E++  +LL  ++ A          I R++ + ++ S
Sbjct: 118 GIDGAAINAKEVGIALFGPYVLAVELASMLLLAGLVVAF--------HIGREERAGEVLS 169

Query: 183 NPDNS 187
           N  N 
Sbjct: 170 NRLND 174


>gi|148653488|ref|YP_001280581.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Psychrobacter sp. PRwf-1]
 gi|148572572|gb|ABQ94631.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Psychrobacter sp. PRwf-1]
          Length = 234

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 12/145 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    +AII+S  V+ + NP++++ S+I + +  AG+F ++GA F   + ++VY GA++
Sbjct: 15  FYALGLVAIIASLRVIMLANPVHAILSMIVSLLALAGIFFIIGAPFAGALQVIVYAGAIL 74

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS--------NFMVFSAEG 119
           V F+F+IMML++ ++     ++  +L S    + AA   V A            V +A+G
Sbjct: 75  VLFVFVIMMLNLGVK--NDARESLWLSSDVWAVPAALSFVIAVVLGYILSLGNGVHNADG 132

Query: 120 ELSRLVFKGNNV--ENIGKVLYTQY 142
            +++ +     +  + +G  L+T+Y
Sbjct: 133 TVAQAMIGAQTISAKQVGIALFTEY 157


>gi|289548986|ref|YP_003473974.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis
           albus DSM 14484]
 gi|289182603|gb|ADC89847.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis
           albus DSM 14484]
          Length = 176

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 2/169 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ   F  FS  A++    VV + NPIY + SL+ + ++ AG+F + GAE V  + L++Y
Sbjct: 1   MQWAAFGAFSLSALLFGLGVVLLPNPIYVILSLLASLISIAGVFFVAGAELVGALQLLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120
             A+ VF++F++  +  +  + +    R  G L    + +L  ++IV     +  S +GE
Sbjct: 61  AVAITVFYVFVLTAVPWEKALKKDSHYRVEGALTFPLLLLLYGQVIVTFLLGVSVSPKGE 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +  ++    N E +G +L+++Y    E+   +LL+ M+GAI++  +  R
Sbjct: 121 IRNILKDLTNTEAVGVILFSKYFLAFELVSLVLLIGMLGAILIGRKEER 169


>gi|86739260|ref|YP_479660.1| NADH dehydrogenase subunit J [Frankia sp. CcI3]
 gi|86566122|gb|ABD09931.1| NADH dehydrogenase subunit J [Frankia sp. CcI3]
          Length = 267

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 102/193 (52%), Gaps = 16/193 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++ S +A++++  +V VR+ ++S   L+      A  +L+  A F+  + ++VY 
Sbjct: 19  EAATFWILSPVAVLAALGMVMVRSAVHSALLLVANLFCVAVFYLIQEAPFLGFVQIIVYA 78

Query: 64  GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIV--CASNFMVFSAE 118
           GA++V FLF++M++ +D     V   R +R  LG+   G+  A L+     S     SA+
Sbjct: 79  GAIMVLFLFVLMLVGVDSSDSLVETIRGQR--LGAIVFGLGFAGLLAFPIGSAIDGGSAK 136

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-------RDI 171
           G LS     G NV+ IG++L+T Y +  E    +L+++ IG +VL  R R       R+ 
Sbjct: 137 G-LSE-ANTGGNVQAIGRLLFTDYVFVFEAISALLVVAAIGTMVLGHREREGGRISQREW 194

Query: 172 KRQDISKQLESNP 184
            R+  ++  +  P
Sbjct: 195 MRRRFTEGRQVTP 207


>gi|239980143|ref|ZP_04702667.1| NADH dehydrogenase subunit J [Streptomyces albus J1074]
 gi|291451998|ref|ZP_06591388.1| NADH dehydrogenase subunit J [Streptomyces albus J1074]
 gi|291354947|gb|EFE81849.1| NADH dehydrogenase subunit J [Streptomyces albus J1074]
          Length = 271

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 94/184 (51%), Gaps = 16/184 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A++ +   V ++  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 13  EAVQFWILGTVAVLGALSTVLMKKAVHSALCLAATMIVLAVFYLANGAYFLGIVQIVVYT 72

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++ FLF++M++ +    A    K    G  ++  LAA         ++ +  G++  
Sbjct: 73  GAIMMLFLFVVMLVGV---TAADSLKETLKGQRWLAALAA----LGFGILLIAGIGQVGI 125

Query: 124 LVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             F        G NV+ +  +++T+Y +  EI+G +L+ + +GA  ++L HR   +R   
Sbjct: 126 SQFNGLAAANSGGNVQGLAALIFTKYVFAFEITGALLITATVGA--MLLTHRERTERAST 183

Query: 177 SKQL 180
            ++L
Sbjct: 184 QREL 187


>gi|206577065|ref|YP_002237332.1| NADH-quinone oxidoreductase, J subunit [Klebsiella pneumoniae 342]
 gi|288934262|ref|YP_003438321.1| NADH dehydrogenase (quinone) [Klebsiella variicola At-22]
 gi|290508465|ref|ZP_06547836.1| NADH dehydrogenase I subunit J [Klebsiella sp. 1_1_55]
 gi|206566123|gb|ACI07899.1| NADH-quinone oxidoreductase, J subunit [Klebsiella pneumoniae 342]
 gi|288888991|gb|ADC57309.1| NADH dehydrogenase (quinone) [Klebsiella variicola At-22]
 gi|289777859|gb|EFD85856.1| NADH dehydrogenase I subunit J [Klebsiella sp. 1_1_55]
          Length = 184

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 102/185 (55%), Gaps = 20/185 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  VVT  NP++++  LI + +  AG+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVVTHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++    +E  ++R +L    +IG  IL+A L+V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLG--GSEIEQERKWLQPGIWIGPAILSAVLLVV----IVYAILG-INDQ 117

Query: 125 VFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G   N + +G  L+  Y   +E++  +LL  ++ A          I R++ + ++ S
Sbjct: 118 GIDGAAINAKEVGIALFGPYVLAVELASMLLLAGLVVAF--------HIGREERAGEVLS 169

Query: 183 NPDNS 187
           N  N 
Sbjct: 170 NRVND 174


>gi|307152385|ref|YP_003887769.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 7822]
 gi|306982613|gb|ADN14494.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 7822]
          Length = 204

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 102/199 (51%), Gaps = 15/199 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  L  F+ I ++  VV + N +YS F L   F++ AG+++LL A+FVA   +++YVGAV
Sbjct: 12  FLILAGFL-ITAALGVVLLSNIVYSAFLLAGVFLSIAGIYILLNADFVAAAQILIYVGAV 70

Query: 67  IVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--ELSR 123
            V  LF IM+++   +    PR+   ++     G++   L       ++ +       S 
Sbjct: 71  NVLILFAIMLVNKQEDFKTVPRR---WIRQIATGLVCLGLFALLGTMILITPWSINSTSP 127

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD----IKRQDISKQ 179
            V +   VE IGK  ++ +  P E++  +LL++M+GAI+L    RRD    +K  +    
Sbjct: 128 AVVENTLVE-IGKHFFSDFLLPFELASILLLMAMVGAIIL---ARRDFIPELKSSEPGTT 183

Query: 180 LESNPDNSIVMVKVKSGKG 198
             + P+    ++ ++SG  
Sbjct: 184 ALTLPERPRELISLESGSA 202


>gi|115304399|ref|YP_762704.1| NADH:ubiquinone oxidoreductase subunit 6 [Ustilago maydis]
 gi|121924030|sp|Q0H8W8|NU6M_USTMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|72256229|gb|AAZ67019.1| NADH:ubiquinone oxidoreductase subunit 6 [Ustilago maydis]
          Length = 226

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 48/68 (70%)

Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
          A++S  LV+T +NP+ SV  LI  FVN AG  +LLG  F+ +  L+VY+GAV V FLF+I
Sbjct: 13 AVLSGILVITSKNPVISVLFLISVFVNVAGYLVLLGVGFIGISYLIVYIGAVTVLFLFVI 72

Query: 75 MMLDIDIE 82
          MML++ + 
Sbjct: 73 MMLNLQLT 80


>gi|7649019|gb|AAF65737.1|AF228525_7 F420H2 dehydrogenase subunit FpoJ [Methanosarcina mazei Go1]
          Length = 176

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 85/159 (53%), Gaps = 2/159 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++  F L + + +  +  VV  ++ + +  +LI      AGL++LL A+F+ +I ++VY
Sbjct: 11  LETAVFGLLALVTVFFAIFVVIAKDVVRAGLALIMCMFGVAGLYILLNAQFLGVIQVLVY 70

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +GA+ V  LF +M+   +I     +  R    +F + +L   ++V  +    ++   EL 
Sbjct: 71  IGAIGVLILFAVMLTKREIGGGPVQINRPL--AFLVCLLFVAVVVTGAFGTSWNTVSELP 128

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                 +N+E IG +++T +  P E+   +LL S+IGAI
Sbjct: 129 ENPADPSNIEGIGMLIFTHFVAPFEVLSIVLLASLIGAI 167


>gi|141061|sp|P03883|YMCC_EMENI RecName: Full=Uncharacterized 25.4 kDa protein in COX3 5'region;
           AltName: Full=URF-C
 gi|12706|emb|CAA30030.1| unnamed protein product [Emericella nidulans]
 gi|472821|gb|AAA99206.1| unknown protein [Emericella nidulans]
          Length = 228

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 35/197 (17%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  +F  ++I      +  RNP+ SV  LI  FVN AG+ +L G  ++ +  ++VYVGAV
Sbjct: 32  FLDIFYIISITFGVFTIISRNPVVSVLFLIGLFVNIAGILILAGINYLGLSYILVYVGAV 91

Query: 67  IVFFLFIIMMLDIDIE--VAEPRKK---------------------------------RG 91
            + FLFI+M+++I I   ++E                                       
Sbjct: 92  SILFLFILMLINIRISELLSETNNDIPLAVLTVLLFYYIIGQVLPCNLTDKTIISSLSNR 151

Query: 92  FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGF 151
           F G + I I     IV  +  + + +       + +   +  IG ++YT Y+  L IS  
Sbjct: 152 FTGIYNIDISNQSSIVGINQEIGYVSSKGWDNTLVEFTQISGIGNIMYTNYSIWLIISSV 211

Query: 152 ILLLSMIGAIVLMLRHR 168
           ILLL M+GAIV+ ++ +
Sbjct: 212 ILLLGMVGAIVITIKQK 228


>gi|212640512|ref|YP_002317032.1| NADH dehydrogenase subunit J [Anoxybacillus flavithermus WK1]
 gi|212561992|gb|ACJ35047.1| NADH dehydrogenase subunit J [Anoxybacillus flavithermus WK1]
          Length = 169

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + F++ S +A+     ++ +   ++ V +L+F FV+ AG+++LL AEFVA + ++
Sbjct: 1   MSGQYIAFFVLSLIALGGGIFMLNLNKVVHMVVALVFTFVSIAGIYVLLSAEFVAAVQVL 60

Query: 61  VYVGAVIVFFLFIIMML---DIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           +Y GA+ +  LF IM+    D       P RK    LG+   G     ++      + F 
Sbjct: 61  IYSGAITIIMLFGIMLTRHQDDGQSTGSPLRKALALLGTVAFG----AVMYIGIRTLDFG 116

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +E     +     N E IG  +Y++Y  P E++  +LL+++IGA++L  +  ++
Sbjct: 117 SEA----VGLHDKNTEQIGIAMYSKYVIPFELASVLLLVALIGAVILAKKDDKE 166


>gi|207108911|ref|ZP_03243073.1| NADH dehydrogenase subunit J [Helicobacter pylori HPKX_438_CA4C1]
          Length = 166

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 20/170 (11%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYVGAVIV + F +M  +
Sbjct: 2   ALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFGMMFFN 61

Query: 79  IDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-LSRLVFKG------NN 130
              EV E ++    L +   G+ L   LI+ A +       GE LSR V          N
Sbjct: 62  SAAEVIERKQSPKILCALSFGVALLLTLILSAPSI------GENLSRQVNSNAIDAQIPN 115

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           ++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 116 IKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 165


>gi|56791568|gb|AAW30322.1| NADH dehydrogenase subunit 6 [Asarum sp. Qiu 96018]
          Length = 166

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 11/160 (6%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+   FLF++
Sbjct: 6   ALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAASFLFVV 65

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRLVFK---- 127
           MM +I I        R    S  IG IL  E+  I+      +       + L +K    
Sbjct: 66  MMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYKVHAG 125

Query: 128 ----GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                 N E +G +LYT Y     +   ILL++MIGAIVL
Sbjct: 126 KVRSWTNFETLGNLLYTYYVVWFLVPSPILLVAMIGAIVL 165


>gi|162456308|ref|YP_001618675.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So
           ce 56']
 gi|161166890|emb|CAN98195.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So
           ce 56']
          Length = 171

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 14/177 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +L F   + + + S+ LV   RN I+S  +L+  F+  AGL++ L A+F+A   ++VY
Sbjct: 4   LSALVFLGLAALTLGSAGLVAFSRNIIHSALALLGTFLGIAGLYVSLSADFIAATQVLVY 63

Query: 63  VGAVIVFFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAE 118
           VG  +V  LF +M+     +++++ PR       +   G++ A L++    +    + AE
Sbjct: 64  VGGTLVLILFAVMLTSRIAEMKISNPRGGP----AVAFGLVTAVLLLLGRVATQTPWPAE 119

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQ 174
            + +       +   +G     +Y  P E+   +LL +MIGA+VL  R  RR  +R+
Sbjct: 120 AKPAM-----PSTAKLGHAFLGEYLLPFELGSVVLLAAMIGAVVLARRAVRRAWERE 171


>gi|167463147|ref|ZP_02328236.1| NADH dehydrogenase subunit J [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383092|ref|ZP_08056919.1| hypothetical protein PL1_1941 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152754|gb|EFX45380.1| hypothetical protein PL1_1941 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 173

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 11/164 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F  F+  AI  +  +VT    IY V S  F F++ AGL++LL AEFVA + +++Y GA+ 
Sbjct: 17  FLFFAMCAIGGAIYMVTFTKVIYMVLSAAFTFISLAGLYVLLEAEFVAFVQVLIYAGAIS 76

Query: 68  VFFLFIIMMLDIDIEVAEP--RKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGELSRL 124
           +  +F IMM     E  +P  R  +  L    IG LA   L+  A     FS  GEL   
Sbjct: 77  ILMIFGIMMTKHRAE-EKPGGRVAQKVLTG--IGCLALFGLLFYAIQQSTFS-PGELR-- 130

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + +N   IGK+L++ +  P EI   +L ++ IGAIV+  R  
Sbjct: 131 --EEDNTLEIGKLLFSGHVIPFEIMSVLLTVAFIGAIVIAKREE 172


>gi|189346379|ref|YP_001942908.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium
           limicola DSM 245]
 gi|189340526|gb|ACD89929.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium
           limicola DSM 245]
          Length = 173

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+F+ + + S+  VV  +N IYS F+L+F F   A L++ L A+F+A+  +VVYVG ++
Sbjct: 10  FYIFAAITVFSAAFVVFSKNVIYSAFALLFTFFGVAALYVFLSADFIAVTQIVVYVGGIL 69

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAEGEL--S 122
           V  LF +M  +    + +   K   L      ++   L++ A+       F   G    S
Sbjct: 70  VLLLFGVMFTN---SIMQTDLKSDVL-----HVVPGTLLLLATVGGLLFTFYTTGTWKPS 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            +   G+ VE IG    ++Y  P E++  +LL  +IGA  L    R D  R +
Sbjct: 122 DVQLHGSVVERIGIETMSRYVLPFEMASILLLAVLIGAAFLA---RYDKVRNN 171


>gi|78186624|ref|YP_374667.1| NADH dehydrogenase I subunit 6 [Chlorobium luteolum DSM 273]
 gi|78166526|gb|ABB23624.1| NADH dehydrogenase subunit J [Chlorobium luteolum DSM 273]
          Length = 177

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 13/147 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYLF+ + ++S+  VV  RN IYS FSL+F F   A L++ L A+F+A+  +VVYVG ++
Sbjct: 10  FYLFAAITVLSAAFVVFSRNIIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVGGIL 69

Query: 68  VFFLFIIM----MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-S 122
           V  LF +M    ++  D++        G L   F+G LA  L      +  ++  G + S
Sbjct: 70  VLLLFGVMFTNKVMTTDLKADVLNVVPGAL--LFLGTLAGLL------YTFYTTNGWMPS 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEIS 149
             + +G+ VE IG    +++  P E++
Sbjct: 122 ETMLEGSVVERIGFETMSRFVLPFEMA 148


>gi|148358102|ref|YP_001249346.1| NADH:ubiquinone oxidoreductase subunit 6 [Gibberella zeae]
 gi|86142501|gb|ABC86616.1| NADH:ubiquinone oxidoreductase subunit 6 [Gibberella zeae]
          Length = 226

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 43/203 (21%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S  A++   L++  +NPI SV  LI  F N +   +L+G  F+ +  L+VY+GAV + FL
Sbjct: 25  SITALLCGILIIINKNPIVSVIFLIGLFANISVYLILIGLTFIGLSYLIVYIGAVSILFL 84

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILA----------------------------- 102
           FI+M+++I     +   +       FI ILA                             
Sbjct: 85  FILMLINIRTSELQSNNRNSVSLGLFITILANFTIFQILPYYMAILNNYSSKLNTILYYL 144

Query: 103 -------------AELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
                          + +  +N M  S+    + +   G +   IG +LYT +   + ++
Sbjct: 145 PWNKFSDILNYINKNIDITNANIMFVSSNSWDNNMAETG-HTATIGHILYTSHNMWIFMA 203

Query: 150 GFILLLSMIGAIVLMLRHRRDIK 172
            FILLL+M GAI++ +++ + I+
Sbjct: 204 SFILLLAMTGAIIITIKNEKAIQ 226


>gi|113170504|ref|YP_717295.1| nad6 [Ostreococcus tauri]
 gi|112806911|emb|CAL36417.1| unnamed protein product [Ostreococcus tauri]
          Length = 256

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 111/241 (46%), Gaps = 68/241 (28%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V+  +NP+YSV  LI  F N AGL LLL  +F A+I L+VYVGA+ V FLF++MML  D
Sbjct: 20  MVIRSKNPVYSVLFLILVFCNTAGLLLLLNLDFFALIFLIVYVGAIAVLFLFVVMML--D 77

Query: 81  IEVAEPRKK-------RGFLGS-FFIGI----------LAAELIVCASNFMV-------- 114
           I++AE ++         GF+G  FFI            L  E +   S  M+        
Sbjct: 78  IKLAEMQESIFFYLPIGGFIGLIFFIEFYFLFNKEFVPLHLETLSTGSTSMLTLQFYVYA 137

Query: 115 --------FSAEG--------------ELSRLVFKGN-NVENIGKVLYTQYAYPLE---- 147
                   FSA                +L  L  + + N+E +    Y     P+E    
Sbjct: 138 FWAFVLYGFSAPHFAQKFRAYSTHFFEQLRGLEHQAHQNLEYVIWPTYVDSKTPVEALGQ 197

Query: 148 -----------ISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSG 196
                      ++  ILL++MIGAI+L L   R ++RQ + +Q  +  D +  + K+++ 
Sbjct: 198 VLYTYYFYFFLVASLILLIAMIGAIMLTLNPHRAVRRQQVFEQ--NARDFAKTVHKIRTL 255

Query: 197 K 197
           K
Sbjct: 256 K 256


>gi|326910750|gb|AEA11193.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii]
 gi|327176857|gb|AEA29865.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii]
          Length = 177

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVT--VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++ F + S +A++S  LVV     NP+ +VF  +  FV  +GL + L  +F AMI LVV
Sbjct: 4   STILFGVLSSLALVSGGLVVRSGALNPVPAVFLFLLVFVLCSGLLVWLDLDFFAMIFLVV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAE----PRKKRGFLGSFFIGILA-----AELIVCASNF 112
           Y GA++VFFLF++MM     E  E    PR     +G  F+  L      +      S +
Sbjct: 64  YAGAMVVFFLFVVMMCTFRREGREHEVAPRHTEFVVGLLFLSHLWLVLERSPRPPTPSAY 123

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +    GE    V    +++ +G +LYT        SG ILL++++GAIVL +    D
Sbjct: 124 PI----GEHCGHVTSATHLDTLGTLLYTHVPLLFIGSGLILLVALLGAIVLTVHTPGD 177


>gi|257852682|gb|ACV71353.1| NADH dehydrogenase subunit 6 [Rhizanthes lowii]
          Length = 176

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
           F+V   +NP++SV   I  F   +GL L LG +F AMI  VV++GA+ V FLF++MM  I
Sbjct: 2   FMVARAKNPVHSVLFSILVFRETSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHI 61

Query: 80  DIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRLVFK--------GNN 130
            I        R    S  IG IL  E+        +   + + + L +K          N
Sbjct: 62  QIAEIHEEVLRYLPFSGLIGLILWWEMFFILDTIPLIKQKRKTTYLGYKVYAGKIISWTN 121

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           +E +G +LYT Y     +   +LL++MIGAIVL +       RQD+ ++
Sbjct: 122 LETLGNLLYTYYFVWFLVPSILLLVAMIGAIVLTMHRTTHGVRQDLFRR 170


>gi|11467591|ref|NP_043737.1| NADH dehydrogenase, subunit 6 [Allomyces macrogynus]
 gi|1236421|gb|AAC49238.1| NADH dehydrogenase, subunit 6 [Allomyces macrogynus]
          Length = 204

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 1/73 (1%)

Query: 8  FYLFSFMAIISSFLVVTV-RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          FYL S + IIS  L + + +NPI SV  L+F FVN A +F+L+G   +  I ++VYVGA+
Sbjct: 8  FYLLSGLGIISGVLTIIMGKNPINSVVYLVFCFVNCAAVFILMGISLLGFIYIIVYVGAI 67

Query: 67 IVFFLFIIMMLDI 79
           + F+F+IMM+D+
Sbjct: 68 AILFIFVIMMMDL 80


>gi|309792511|ref|ZP_07686975.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Oscillochloris trichoides DG6]
 gi|308225499|gb|EFO79263.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Oscillochloris trichoides DG6]
          Length = 196

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 14/185 (7%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L S + I ++ +VVTVRN I++   LI +F   A L+LLL AEF+A++ ++VYVG
Sbjct: 6   QIIFGLLSALVIGAAMMVVTVRNVIHAALWLIASFFGVAALYLLLEAEFIAVVQVLVYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGF------LGSFFIGILAAELIVCASNFMVFSAE 118
           A+ +  LF IM+   + E      K  +      LG F +  L        + + +    
Sbjct: 66  AISILILFAIMLTRSN-EGDRLLTKYWWASALIALGLFGVAFLPT---FTGTTWNMPQPT 121

Query: 119 GEL-SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDI 176
           G   +  V  G  VE +G+   +++    EI+G +L +++IGAIV+    R   +R   +
Sbjct: 122 GPAGTPEVLSG--VEELGRGFVSEFVLHFEIAGVLLTVALIGAIVIAFEERSRRRRVLTL 179

Query: 177 SKQLE 181
           +++LE
Sbjct: 180 AEELE 184


>gi|292492180|ref|YP_003527619.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Nitrosococcus halophilus Nc4]
 gi|291580775|gb|ADE15232.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Nitrosococcus halophilus Nc4]
          Length = 167

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 63/92 (68%), Gaps = 1/92 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ +F+A++S+ +V+T  NP++++  LI + ++ A +F LLGA F A + +++Y GA++
Sbjct: 5  FYIAAFVAVVSTAMVITRLNPVHALLYLIVSLLSVALIFFLLGAPFAAALEVLIYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
          V F+F++MML++  E A  ++ R      +IG
Sbjct: 65 VLFVFVVMMLNLGKE-AIAQENRWLNPQMWIG 95


>gi|268627911|gb|ACZ13378.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1d]
          Length = 78

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVY 59

Query: 63 VGAVIVFFLFIIMMLD 78
          VGA+ + FLF+IM++ 
Sbjct: 60 VGAIAILFLFVIMLIQ 75


>gi|166368384|ref|YP_001660657.1| NADH dehydrogenase subunit J [Microcystis aeruginosa NIES-843]
 gi|166090757|dbj|BAG05465.1| NADH dehydrogenase subunit J [Microcystis aeruginosa NIES-843]
          Length = 198

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + I ++  VV + N +YS F L   F++ +GL+LLL A+FVA   +++Y
Sbjct: 7   VQIVSFGILAALVIGTALGVVLLSNIVYSAFLLGGVFISISGLYLLLNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121
           VGA+ V  LF IM+++   + ++  K+  ++      ++   L V  S  ++ +      
Sbjct: 67  VGAINVLILFAIMLVNKQEDFSDIPKR--WIRQASTALVCVGLFVLLSTMVLITPWSIST 124

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
           +      N +  IGK  ++ +  P E++  +LL++M+GAI+L    RRD+
Sbjct: 125 TSPAVVTNTLVEIGKHFFSDFLLPFELASVLLLMAMVGAIIL---ARRDL 171


>gi|15610290|ref|NP_217670.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Rv]
 gi|15842730|ref|NP_337767.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis CDC1551]
 gi|31794330|ref|NP_856823.1| NADH dehydrogenase subunit J [Mycobacterium bovis AF2122/97]
 gi|121639037|ref|YP_979261.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663009|ref|YP_001284532.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Ra]
 gi|148824348|ref|YP_001289102.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis F11]
 gi|215405152|ref|ZP_03417333.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 02_1987]
 gi|215413021|ref|ZP_03421722.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A]
 gi|215428610|ref|ZP_03426529.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T92]
 gi|215432113|ref|ZP_03430032.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054]
 gi|215447443|ref|ZP_03434195.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85]
 gi|218754933|ref|ZP_03533729.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis GM 1503]
 gi|224991529|ref|YP_002646218.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800188|ref|YP_003033189.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN
           1435]
 gi|254365779|ref|ZP_04981824.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase
           chain J) [Mycobacterium tuberculosis str. Haarlem]
 gi|254552244|ref|ZP_05142691.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260188195|ref|ZP_05765669.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis CPHL_A]
 gi|260202301|ref|ZP_05769792.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T46]
 gi|260206493|ref|ZP_05773984.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis K85]
 gi|289444719|ref|ZP_06434463.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           T46]
 gi|289448834|ref|ZP_06438578.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555427|ref|ZP_06444637.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN
           605]
 gi|289575866|ref|ZP_06456093.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           K85]
 gi|289746963|ref|ZP_06506341.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           02_1987]
 gi|289751832|ref|ZP_06511210.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           T92]
 gi|289755273|ref|ZP_06514651.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054]
 gi|289759284|ref|ZP_06518662.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85]
 gi|289763337|ref|ZP_06522715.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase
           chain J) [Mycobacterium tuberculosis GM 1503]
 gi|294995505|ref|ZP_06801196.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 210]
 gi|297635797|ref|ZP_06953577.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis KZN 4207]
 gi|297732794|ref|ZP_06961912.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis KZN R506]
 gi|298526628|ref|ZP_07014037.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A]
 gi|306777471|ref|ZP_07415808.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu001]
 gi|306782196|ref|ZP_07420533.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu002]
 gi|306786017|ref|ZP_07424339.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu003]
 gi|306790382|ref|ZP_07428704.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu004]
 gi|306794907|ref|ZP_07433209.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu005]
 gi|306799107|ref|ZP_07437409.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu006]
 gi|306804950|ref|ZP_07441618.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu008]
 gi|306809139|ref|ZP_07445807.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu007]
 gi|306969241|ref|ZP_07481902.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu009]
 gi|306973588|ref|ZP_07486249.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu010]
 gi|307085900|ref|ZP_07495013.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu012]
 gi|313660127|ref|ZP_07817007.1| NADH:ubiquinone oxidoreductase subunit J [Mycobacterium
           tuberculosis KZN V2475]
 gi|1781214|emb|CAB06285.1| PROBABLE NADH DEHYDROGENASE I (CHAIN J) NUOJ (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN J) [Mycobacterium tuberculosis
           H37Rv]
 gi|13883052|gb|AAK47581.1| NADH dehydrogenase I, J subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|31619926|emb|CAD95270.1| PROBABLE NADH DEHYDROGENASE I (CHAIN J) NUOJ (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN J) [Mycobacterium bovis AF2122/97]
 gi|121494685|emb|CAL73166.1| Probable NADH dehydrogenase I (chain J) nuoJ [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|134151292|gb|EBA43337.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase
           chain J) [Mycobacterium tuberculosis str. Haarlem]
 gi|148507161|gb|ABQ74970.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Ra]
 gi|148722875|gb|ABR07500.1| NADH dehydrogenase I chain J nuoJ (NADH-ubiquinone oxidoreductase
           chain J) [Mycobacterium tuberculosis F11]
 gi|224774644|dbj|BAH27450.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321691|gb|ACT26294.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN
           1435]
 gi|289417638|gb|EFD14878.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           T46]
 gi|289421792|gb|EFD18993.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440059|gb|EFD22552.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN
           605]
 gi|289540297|gb|EFD44875.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           K85]
 gi|289687491|gb|EFD54979.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           02_1987]
 gi|289692419|gb|EFD59848.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           T92]
 gi|289695860|gb|EFD63289.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054]
 gi|289710843|gb|EFD74859.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase
           chain J) [Mycobacterium tuberculosis GM 1503]
 gi|289714848|gb|EFD78860.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85]
 gi|298496422|gb|EFI31716.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A]
 gi|308214183|gb|EFO73582.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu001]
 gi|308324957|gb|EFP13808.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu002]
 gi|308329374|gb|EFP18225.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu003]
 gi|308333203|gb|EFP22054.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu004]
 gi|308336693|gb|EFP25544.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu005]
 gi|308340534|gb|EFP29385.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu006]
 gi|308344473|gb|EFP33324.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu007]
 gi|308348469|gb|EFP37320.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu008]
 gi|308353099|gb|EFP41950.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu009]
 gi|308357072|gb|EFP45923.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu010]
 gi|308364635|gb|EFP53486.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu012]
 gi|323718243|gb|EGB27423.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           CDC1551A]
 gi|328459925|gb|AEB05348.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN
           4207]
          Length = 262

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 95/187 (50%), Gaps = 16/187 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ S +A++ +  VV   N +YS   L    +  A  ++   A F+ ++ +VVY 
Sbjct: 17  EAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF++M++ +D   +     RG         +AA L       ++ S  G+++ 
Sbjct: 77  GAVMMLFLFVLMLIGVDSAESLKETLRGQR-------VAAVLTGVGFGVLLISTIGQVAT 129

Query: 124 LVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             F G        NVE +  +++++Y +  E++  +L+ + +GA+VL   HR   +R+  
Sbjct: 130 RGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLA--HRERFERRKT 187

Query: 177 SKQLESN 183
            ++L   
Sbjct: 188 QRELSQE 194


>gi|153799806|gb|ABS50634.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
 gi|153799808|gb|ABS50635.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
          Length = 171

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 23/167 (13%)

Query: 30  YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-----EVA 84
           +SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I I     EV 
Sbjct: 1   HSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVL 60

Query: 85  EPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
                 G +G  F            I +L  +    +  + V++ +      V    N+E
Sbjct: 61  RYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK------VRSWTNLE 114

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 115 TLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 161


>gi|256380656|ref|YP_003104316.1| NADH dehydrogenase subunit J [Actinosynnema mirum DSM 43827]
 gi|255924959|gb|ACU40470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinosynnema
           mirum DSM 43827]
          Length = 277

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 89/176 (50%), Gaps = 8/176 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++   +A+  +  ++  RN ++S   L+   ++  GL+++  A F+  + ++VY 
Sbjct: 23  EAAAFWVLGPLALAGALGMLFARNAVHSALWLVMTMLSLGGLYMVQQAPFLGFVQIIVYT 82

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GA+++ FLF++M++  D     +EV   R +R       +G     +   A         
Sbjct: 83  GAIMMLFLFVLMLVGRDSSDSVVEVL--RGQRLAAAVLGLGFGGLVVGALARALTEVQPV 140

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKR 173
           G +      G NV NIG  ++T Y +P E++  +L+ + +GA+VL    + R+ K+
Sbjct: 141 GLVEANTTGGGNVANIGARIFTDYLFPFELTSALLITAAVGAMVLAFTSKIRETKK 196


>gi|327403953|ref|YP_004344791.1| NADH dehydrogenase subunit J [Fluviicola taffensis DSM 16823]
 gi|327319461|gb|AEA43953.1| NADH dehydrogenase subunit J [Fluviicola taffensis DSM 16823]
          Length = 170

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 99/172 (57%), Gaps = 15/172 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   + I ++ +VV  ++P+ SV  L+  F   +  ++L+ A+F+A++ ++VY GA++
Sbjct: 7   FYILGGLTIGTALMVVLSKHPVRSVLYLVLTFFLISANYVLMNAQFIAIVNIIVYAGAIM 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-------GSFFIGILAAELIVCASNFMVFSAEGE 120
           V FLF++M+L+++ E  EP+             GS F+ ++AA      +  M+  A  E
Sbjct: 67  VLFLFVLMLLNLNKE-NEPKHSPMMTIGAAVAGGSLFLVVVAAMRDAILATPMI-DANSE 124

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                 K   VEN+G++L+T+Y  P E+S  + L +M+GA++L  + ++ I 
Sbjct: 125 ------KVGLVENLGQILFTKYVLPFEVSSVLFLAAMVGAVLLAKKEKQTID 170


>gi|304398208|ref|ZP_07380082.1| NADH dehydrogenase (quinone) [Pantoea sp. aB]
 gi|308187596|ref|YP_003931727.1| NADH dehydrogenase I chain J [Pantoea vagans C9-1]
 gi|304354074|gb|EFM18447.1| NADH dehydrogenase (quinone) [Pantoea sp. aB]
 gi|308058106|gb|ADO10278.1| NADH dehydrogenase I chain J [Pantoea vagans C9-1]
          Length = 183

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 99/188 (52%), Gaps = 16/188 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL   +A++++  V+T  NP++++  LI + ++ AG+F  +GA F   + ++VY GA++
Sbjct: 5   FYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126
           V F+F++MML++  +  E +++     S +IG  + + L++    + + +A  +      
Sbjct: 65  VLFVFVVMMLNLGKQT-EKQEREWLSPSLWIGPGIVSLLLLVVMIYAILTANDQ----GI 119

Query: 127 KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
            G   + + +G  L+  Y   +E++  +LL  ++ A          I R++   ++ SN 
Sbjct: 120 DGTIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAF--------HIGREERQGEVLSNR 171

Query: 185 DNSIVMVK 192
           +     VK
Sbjct: 172 NADAAQVK 179


>gi|326902622|gb|EGE49555.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           W-148]
          Length = 262

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 95/187 (50%), Gaps = 16/187 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ S +A++ +  VV   N +YS   L    +  A  ++   A F+ ++ +VVY 
Sbjct: 17  EAVMFWVLSALALLGAVGVVLAINAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF++M++ +D   +     RG         +AA L       ++ S  G+++ 
Sbjct: 77  GAVMMLFLFVLMLIGVDSAESLKETLRGQR-------VAAVLTGVGFGVLLISTIGQVAT 129

Query: 124 LVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             F G        NVE +  +++++Y +  E++  +L+ + +GA+VL   HR   +R+  
Sbjct: 130 RGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLA--HRERFERRKT 187

Query: 177 SKQLESN 183
            ++L   
Sbjct: 188 QRELSQE 194


>gi|157371537|ref|YP_001479526.1| NADH dehydrogenase subunit J [Serratia proteamaculans 568]
 gi|157323301|gb|ABV42398.1| NADH dehydrogenase (quinone) [Serratia proteamaculans 568]
          Length = 186

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 102/192 (53%), Gaps = 18/192 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL  F+A+I++  V++  NP++++  LI + +  + +F  LGA F A + ++VY GA++
Sbjct: 5   FYLAGFIAVIATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFI--GILA-AELIVCASNFMVFSAEGELSR 123
           V F+F++MML++   V +  ++R +L  S +I  GIL+ A L+V        S +G    
Sbjct: 65  VLFVFVVMMLNLGNAVQQ--QERDWLKPSVWIGPGILSLALLVVLIVAIRSVSDQGISGE 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           +V    + + +G  L+  Y   +E++  +LL  ++ A          I R+    ++ SN
Sbjct: 123 MV----DAKAVGISLFGPYVLAVELASMLLLAGLVVAF--------HIGREHKPGEVLSN 170

Query: 184 PDNSIVMVKVKS 195
                 M + KS
Sbjct: 171 APAGSEMARRKS 182


>gi|254457280|ref|ZP_05070708.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Campylobacterales bacterium GD 1]
 gi|207086072|gb|EDZ63356.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Campylobacterales bacterium GD 1]
          Length = 191

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 19/188 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLF+F+ I   ++ VT    +Y++ +L    +  +  F +LGA+F+  + +VVY 
Sbjct: 3   EAIAFYLFAFLTIAMFYITVTTSQALYALTALAAGMIFISAFFFILGADFLGAVQIVVYS 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--GE- 120
           GAV+  + F +M  D   EV E    +  +    +  ++A L+V     ++F+A   G+ 
Sbjct: 63  GAVMALYAFGMMFFDTTREVKEKNGNKYLVTG--LATISAILVV-----LIFAAPIVGDN 115

Query: 121 ---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
              L  +     N + IG VL+T+Y  P E++  +LL++M+  IVL        K+ D+S
Sbjct: 116 ITALYPVTEGAGNTQEIGIVLFTKYLVPFELAAVMLLVAMVSGIVLAG------KKMDLS 169

Query: 178 KQLESNPD 185
             L S+ +
Sbjct: 170 LTLMSDAE 177


>gi|157816261|ref|YP_001492832.1| NADH dehydrogenase subunit 6 [Tilletia indica]
 gi|187373139|ref|YP_001876482.1| ND6 [Tilletia walkeri]
 gi|115361454|gb|ABI95820.1| NADH dehydrogenase subunit 6 [Tilletia indica]
 gi|144925994|gb|ABP03928.1| ND6 [Tilletia walkeri]
          Length = 294

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 50/79 (63%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M +      +  AI S  LV+T +NP+ SV  LI  FVN AG  +LLG  F+ +  L+VY
Sbjct: 1  MNNFLLDFLAIRAIFSGILVITSKNPVISVLFLISVFVNIAGYLILLGVGFIGISYLIVY 60

Query: 63 VGAVIVFFLFIIMMLDIDI 81
          VGA+ + FLF++MML++ I
Sbjct: 61 VGAIAILFLFVVMMLNLQI 79


>gi|329296026|ref|ZP_08253362.1| NADH:ubiquinone oxidoreductase subunit J [Plautia stali symbiont]
          Length = 183

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 95/179 (53%), Gaps = 16/179 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL   +A++++  V+T  NP++++  LI + ++ AG+F  +GA F   + ++VY GA++
Sbjct: 5   FYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++  +  + +++     S +IG   +    L+V     M  + +G    +
Sbjct: 65  VLFVFVVMMLNLG-KTQQDQEREWLKPSLWIGPGIVSLLLLVVMIYAIMTATDQGIDGTV 123

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           +    + + +G  L+  Y   +E++  +LL  ++ A          I R+D   ++ SN
Sbjct: 124 I----DAKAVGISLFGPYVLAVELASMLLLAGLVVAF--------HIGREDRQGEVLSN 170


>gi|159030036|emb|CAO90417.1| ndhG [Microcystis aeruginosa PCC 7806]
          Length = 198

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 95/178 (53%), Gaps = 22/178 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + I ++  VV + N +YS F L   F++ +GL+LLL A+FVA   +++Y
Sbjct: 7   VQIVSFGILAALVIGTALGVVLLSNIVYSAFLLGGVFISISGLYLLLNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VGA+ V  LF IM+++   + ++  K+  R           A+  +VC   F++ S    
Sbjct: 67  VGAINVLILFAIMLVNKQEDFSDIPKRWIRQ----------ASTALVCVGLFVLLSTMVL 116

Query: 121 LSRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
           ++             N +  IGK  ++ +  P E++  +LL++M+GAI+L    RRD+
Sbjct: 117 ITPWSISSTSPAVVTNTLVEIGKHFFSDFLLPFELASVLLLMAMVGAIIL---ARRDL 171


>gi|159036136|ref|YP_001535389.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora
           arenicola CNS-205]
 gi|157914971|gb|ABV96398.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora
           arenicola CNS-205]
          Length = 200

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 14/187 (7%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S  LVV  R+ + +   L+      AG++L+L AE VA + +++YVGAV+V  LF +M+ 
Sbjct: 18  SGALVVATRHLVRAGLYLVLCLAAVAGMYLVLTAELVAWVQVLIYVGAVVVLLLFAVMLT 77

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKV 137
              I  +    + G+  +   G     L     +   +S     +  +      E IG+ 
Sbjct: 78  RAPIGASTDLDRPGWPAALIGGGTGLGLAALLVDAYRWS-----TVQLPTAGTAERIGEQ 132

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD------NSIVMV 191
           ++  +  P E+   +LL +++GAI+L    R DI R  + +  +  P       ++   V
Sbjct: 133 VFQSWVLPFEVLSMLLLAALVGAIIL---SRPDIGRPPVDRDGQGRPGRAGDAADATGGV 189

Query: 192 KVKSGKG 198
             K G+G
Sbjct: 190 DGKPGEG 196


>gi|111220508|ref|YP_711302.1| NADH dehydrogenase subunit J [Frankia alni ACN14a]
 gi|111148040|emb|CAJ59706.1| NADH dehydrogenase (quinone) [Frankia alni ACN14a]
          Length = 358

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 97/173 (56%), Gaps = 13/173 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++ + +A++++  +V VR+ ++    L+      A  +L+  A F+  + ++VY 
Sbjct: 20  EATVFWILAPIAVLAALGMVFVRSAVHCALLLVANLFCVAVFYLVQQAPFLGFVQIIVYA 79

Query: 64  GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-EG 119
           GA++V FLF++M++ +D     V   R +R  LG+   G+  A L+V    F + SA +G
Sbjct: 80  GAIMVLFLFVLMLVGVDSSDSLVETIRGQR--LGAAIFGLGFAGLLV----FPIGSAIDG 133

Query: 120 ELSR---LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           E ++      +G NV+ IG++L++ Y +  E    +L+++ IG +VL  R R 
Sbjct: 134 ETAKGLDTPNEGGNVQAIGRLLFSDYVFVFEAVSALLVVAAIGTMVLGHRERE 186


>gi|251789022|ref|YP_003003743.1| NADH dehydrogenase (quinone) [Dickeya zeae Ech1591]
 gi|247537643|gb|ACT06264.1| NADH dehydrogenase (quinone) [Dickeya zeae Ech1591]
          Length = 183

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 95/185 (51%), Gaps = 17/185 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY GA++
Sbjct: 5   FYATAIIAVLATLRVITHTNPVHALLYLIVSLLAVAGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPR----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           V F+F++MML++   V E      K   +LG    G+L+  L+      ++   +  ++ 
Sbjct: 65  VLFVFVVMMLNLGNSVDEQEKLWLKPTVWLGP---GVLSLVLLAIIVKGIISVTDQNIA- 120

Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISK 178
               GN  + + +G  L+  Y   +E++  +LL  ++ A  +    +R     K QD  K
Sbjct: 121 ----GNMIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGELIAKDQDADK 176

Query: 179 QLESN 183
           ++   
Sbjct: 177 KITEE 181


>gi|229490769|ref|ZP_04384604.1| NADH-quinone oxidoreductase, j subunit nuoj [Rhodococcus
           erythropolis SK121]
 gi|229322159|gb|EEN87945.1| NADH-quinone oxidoreductase, j subunit nuoj [Rhodococcus
           erythropolis SK121]
          Length = 265

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 97/194 (50%), Gaps = 14/194 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+IS+  VV     +YS   L    +  A  +++ GA F+ ++ +VVY 
Sbjct: 22  EAVQFWILGTLAVISALGVVAAPKAVYSALFLAMTMIILAVFYIVQGALFLGVVQIVVYT 81

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF++M++ +D   +     RG   S  + I     ++        S  G    
Sbjct: 82  GAVMMLFLFVLMLVGVDSSDSLVETLRGQRVSAIV-IGVGFGLLLIGGLGNASISGFTGF 140

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----KRQDISKQ 179
                 N++ +  +++ +Y +  E++G +L+ + +GA  +ML HR  I     ++++S+Q
Sbjct: 141 TGLDQGNIDALADLIFIRYVWAFELTGALLITATLGA--MMLAHREKIGATLSQRELSQQ 198

Query: 180 L-------ESNPDN 186
                   ESNPD 
Sbjct: 199 RFAYLGSDESNPDK 212


>gi|18640458|ref|NP_570147.1| NADH-ubiquinone oxidoreductase chain 6 [Hypocrea jecorina]
 gi|18496639|gb|AAL74172.1|AF447590_9 NADH-ubiquinone oxidoreductase chain 6 [Hypocrea jecorina]
          Length = 256

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 44/213 (20%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S +A++    V+  +NPI S+ SLI  F + +   +L G  F+    L+VY+GAV + 
Sbjct: 28  ILSVIALLFGIAVIVNKNPIASLLSLIGLFASISVYLILSGLTFIGFSYLIVYIGAVSIL 87

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL---AAELIVCASNFMVFSAEGELSRLVF 126
           FLFI+M+++I     +         + FI IL   A   ++  S  ++ S   +LS +++
Sbjct: 88  FLFILMLINIRTSELQSNNINSIPLALFITILLNYALFQLLPYSIAIINSYNNKLSNIIY 147

Query: 127 ---------------------------------KGN-----NVENIGKVLYTQYAYPLEI 148
                                             GN     ++  IG +LYT Y   L I
Sbjct: 148 YLPTSKYNDIITHISKNLDINTANVMFVTSNSWDGNMAETSHISTIGNILYTSYNMWLFI 207

Query: 149 SGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           + FILLL+M+GAIV+ ++  R+   + IS  +E
Sbjct: 208 ASFILLLAMVGAIVITIKQERN---RGISSMVE 237


>gi|189220226|ref|YP_001940866.1| NADH dehydrogenase subunit J [Methylacidiphilum infernorum V4]
 gi|189187084|gb|ACD84269.1| NADH dehydrogenase subunit J [Methylacidiphilum infernorum V4]
          Length = 135

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 5/139 (3%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
           +L+   ++ AGLF+LLGA F+A + ++VY GAV+V FLFIIM+LD+  E     +  G L
Sbjct: 2   NLVLMILSIAGLFVLLGAYFLAAVQVLVYAGAVMVLFLFIIMLLDLKAEEQATMRPLGML 61

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
           G F + +L       A   M  S   E   L   G  ++ +G++L+  Y+   E+ G +L
Sbjct: 62  GGFLLVLLFGVGFSLAVKAMDSSLSKEQKALGVGG--IKALGELLFANYSLAFEVVGLLL 119

Query: 154 LLSMIGAIVLMLRHRRDIK 172
           L+SM+G I+L    ++D++
Sbjct: 120 LISMVGVIIL---SKKDLE 135


>gi|238062220|ref|ZP_04606929.1| NADH dehydrogenase subunit J [Micromonospora sp. ATCC 39149]
 gi|237884031|gb|EEP72859.1| NADH dehydrogenase subunit J [Micromonospora sp. ATCC 39149]
          Length = 256

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 94/190 (49%), Gaps = 24/190 (12%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++ + +A++ +  ++  RN ++S   L+   +     ++L    F+ M+ ++VY 
Sbjct: 17  EEVTFWILAPLALLGAIGMIAARNAVHSALWLVLTMLCLGVFYVLQAGPFIGMVQIIVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIE---VAEPRKKR--------GFLGSFFIGILAAELIVCASNF 112
           GA+++ FLF++M++  D     +   R +R        GF G    G+      V A   
Sbjct: 77  GAIMMLFLFVLMLVGRDASDSLIETLRGQRIAAVVLGLGFAGLVGGGLYRGLGGVSAVGL 136

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
              +AEG          NV+ I ++L+T+Y +  E++  +L+ + +GA+VL    RR   
Sbjct: 137 EQANAEG----------NVQGIARLLFTKYVFAFELTSALLITAAVGAMVLAHIERR--- 183

Query: 173 RQDISKQLES 182
           R+D   Q+ +
Sbjct: 184 REDKMDQIAT 193


>gi|11466464|ref|NP_038167.1| NADH dehydrogenase subunit 6 [Chrysodidymus synuroideus]
 gi|7110461|gb|AAF36933.1|AF222718_7 NADH dehydrogenase subunit 6 [Chrysodidymus synuroideus]
          Length = 184

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 8/179 (4%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           F+ + I +S  V    NP++S+  L+  F++A+G+    GA+F+ ++ +++YVGA+ + F
Sbjct: 5   FNLILIFASLFVFLSENPVHSILFLVLVFLSASGICFYFGADFLGLLFVIIYVGAIAILF 64

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSF-FIGILA-AELIVCASNFMVFSAEGELSRLVFKG 128
           +FIIMML+I I+     K   +   F FIG LA  +L +  S           +   F  
Sbjct: 65  IFIIMMLNIKIK----NKALNYFYFFVFIGFLAFLQLYLGLSKCFSNFFFFNSNFFFFDS 120

Query: 129 NNVE-NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186
            ++E  IG+ LY  + +   ISG ILL++MIGAIVL L +     ++ + +Q +   DN
Sbjct: 121 LSIEFFIGQTLYNYFTFCFLISGIILLIAMIGAIVLTLNYTSKHFKKFLFRQ-QVRTDN 178


>gi|300114501|ref|YP_003761076.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Nitrosococcus watsonii C-113]
 gi|299540438|gb|ADJ28755.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           watsonii C-113]
          Length = 167

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 91/160 (56%), Gaps = 16/160 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ + +A++S+ +V+T  N ++++  LI + +  A +F LLGA F A + +++Y GA++
Sbjct: 5   FYIAAIIAVVSTIMVITRLNAVHALLYLIVSLLAVALIFFLLGAPFAAALEVIIYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG------ILAAELI-VCASNFMVFSAEGE 120
           V F+F+IMML++  E +  ++ R F    ++G      +L  EL+ + A++    S+   
Sbjct: 65  VLFVFVIMMLNLGKE-SVAQENRWFTPYLWLGPGILSFVLLIELVYLLATDSSALSSAEM 123

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
           ++         + +G  L+  Y   +E++  +LL  ++GA
Sbjct: 124 ITP--------QQVGVALFGPYLLAVELAAMLLLTGLVGA 155


>gi|307721741|ref|YP_003892881.1| NADH dehydrogenase subunit J [Sulfurimonas autotrophica DSM 16294]
 gi|306979834|gb|ADN09869.1| NADH dehydrogenase subunit J [Sulfurimonas autotrophica DSM 16294]
          Length = 188

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 100/188 (53%), Gaps = 19/188 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLF+F+ I   ++ VT +  +Y++ +L    +  +  F +LGA+F+  + ++VY 
Sbjct: 3   EAVAFYLFAFLTIAMFYITVTTKQALYALTALAAGMIFISAFFFILGADFLGAVQIIVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+  + F +M  D   EV E +  +  +    +  LAA L+V     ++F+A      
Sbjct: 63  GAVMALYAFGMMFFDTTREVKEKQGNKYIIVG--LSTLAAVLVV-----IIFAAPMVSEN 115

Query: 124 LV-----FKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +V       G  N + +G VL+T+Y  P E++  +LL++M+  IVL        K+ D+S
Sbjct: 116 IVALYPAIDGVGNTQEVGLVLFTKYLIPFEVAAIMLLVAMVAGIVLAG------KKMDLS 169

Query: 178 KQLESNPD 185
             L ++ +
Sbjct: 170 ITLINDAE 177


>gi|311278763|ref|YP_003940994.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Enterobacter
           cloacae SCF1]
 gi|308747958|gb|ADO47710.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Enterobacter
           cloacae SCF1]
          Length = 184

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 101/194 (52%), Gaps = 22/194 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVITHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDI-DIEVAEPR---KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           V F+F++MML++   E+ + R   K + ++G    GIL+  L+      +V+   G L+ 
Sbjct: 65  VLFVFVVMMLNLGGSEIEQERQWLKPQVWIGP---GILSVVLLAV----IVYGIIG-LND 116

Query: 124 LVFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
               GN +  + +G  L+  Y   +E++  +LL  ++ A          + R++   ++ 
Sbjct: 117 QGIDGNAIGAKEVGIALFGPYVLAVELASMLLLAGLVVAF--------HLGREERQGEVL 168

Query: 182 SNPDNSIVMVKVKS 195
           SN  N     K + 
Sbjct: 169 SNRSNDSAKRKTEE 182


>gi|302536177|ref|ZP_07288519.1| NADH dehydrogenase subunit J [Streptomyces sp. C]
 gi|302445072|gb|EFL16888.1| NADH dehydrogenase subunit J [Streptomyces sp. C]
          Length = 270

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 93/186 (50%), Gaps = 20/186 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   + ++  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 15  EAVQFWVLGTVAVIGALCTILMKKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQVVVYT 74

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121
           GA+++ FLF++M++ +    A    K    G  ++  L      C   F  ++ +  G  
Sbjct: 75  GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLAAL------CGLGFGILLIAGIGNA 125

Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
               F G        +VE + ++++T+Y +  EI+G +L+ + +GA+VL   HR   +R 
Sbjct: 126 GLTHFNGLGKVNSAGHVEGLAELIFTRYIFAFEITGALLITAAVGAMVLT--HRERTERA 183

Query: 175 DISKQL 180
              ++L
Sbjct: 184 ATQREL 189


>gi|323702658|ref|ZP_08114319.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532321|gb|EGB22199.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfotomaculum nigrificans DSM 574]
          Length = 172

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 8/169 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L S + + S+ LVVT++N ++SV  LI  F+  AG+FL+L A+FVA + ++VY GAV 
Sbjct: 10  FVLLSGVVLGSALLVVTLKNLVHSVLWLIVTFIGTAGVFLMLEADFVAAVQVLVYAGAVC 69

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAEL-IVCASNFMVFSAEGELSRLV 125
           +  +F +M++   ++  + P   R  + +  +G+L   + ++ A    V S  G   +  
Sbjct: 70  IMVVFGVMLVQRNEMGNSNPFNYRFRIAAPVVGVLFIIIGLLTAKAQWVTSGAGVPKK-- 127

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                V+ +  +L   +  P E++  +L +++ GA+VL+   R    R 
Sbjct: 128 ----TVQALAPILLGDFMIPFEVAAILLTVALTGALVLVKEVRAHGDRS 172


>gi|118617955|ref|YP_906287.1| NADH dehydrogenase subunit J [Mycobacterium ulcerans Agy99]
 gi|183981489|ref|YP_001849780.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone
           oxidoreductase chain J) [Mycobacterium marinum M]
 gi|118570065|gb|ABL04816.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone
           oxidoreductase chain J) [Mycobacterium ulcerans Agy99]
 gi|183174815|gb|ACC39925.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone
           oxidoreductase chain J) [Mycobacterium marinum M]
          Length = 262

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 95/181 (52%), Gaps = 4/181 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A++ +  VV   N +YS   L    +  A  +++  A F+ ++ +VVY 
Sbjct: 21  EAVTFWILGALALVGALGVVMAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVVYT 80

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GAV++ FLF++M++ +D   +     RG  + +  IG+    L++ A   +       L+
Sbjct: 81  GAVMMLFLFVLMLIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFAGLT 140

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                G NVE +  +++++Y +  E++  +L+ + IGA+VL   HR   +R+   ++L  
Sbjct: 141 AANANG-NVEGLAALIFSRYLWAFELTSALLITAAIGAMVLA--HRERFERRKSQRELSQ 197

Query: 183 N 183
            
Sbjct: 198 E 198


>gi|110598461|ref|ZP_01386732.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339911|gb|EAT58415.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium
           ferrooxidans DSM 13031]
          Length = 173

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 81/147 (55%), Gaps = 5/147 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FY+F+ + ++S+  VV  RN IYS F+L+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 8   TVIFYIFAAITVLSAAFVVFTRNVIYSAFALLFTFFGVAALYVFLSADFIAVTQVVVYVG 67

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SR 123
            ++V  LF +M  +  I  A+P+     +     G L    ++ A  +  ++    + S 
Sbjct: 68  GILVLLLFGVMFTN-SIMNAKPKSD---VLHIIPGTLLLLAMIGALLYTFYTTHSWMPSE 123

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISG 150
            + +G+ VE IG    ++Y  P E++ 
Sbjct: 124 TMLQGSIVERIGFETMSRYVLPFEMAS 150


>gi|226365389|ref|YP_002783172.1| NADH dehydrogenase subunit J [Rhodococcus opacus B4]
 gi|226243879|dbj|BAH54227.1| NADH-quinone oxidoreductase chain J [Rhodococcus opacus B4]
          Length = 272

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 95/184 (51%), Gaps = 10/184 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++ + +A+I +  VV+    +YS   L    +  A  ++  GA F+ ++ +VVY 
Sbjct: 22  EGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIAQGAPFLGVVQIVVYT 81

Query: 64  GAVIVFFLFIIMMLDIDIE---VAEPRKKR-GFLGSFFIGILAAELIVCASNFMVFSAEG 119
           GAV++ FLF++M++ +D     V   R +R   + +     L        ++   F+   
Sbjct: 82  GAVMMLFLFVLMLIGVDSSESLVENLRGQRVAAIAAGLGFGLLLIGGFGRASVSAFTGLD 141

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           + +     G NV+ + ++++ +Y +  E++G +L+ + IGA+VL   HR   +R+   ++
Sbjct: 142 QAN----AGGNVQGLAELVFVRYVWAFELTGALLITATIGAMVLA--HRERFERRKDQRE 195

Query: 180 LESN 183
           L  +
Sbjct: 196 LSQD 199


>gi|312129478|ref|YP_003996818.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Leadbetterella byssophila DSM 17132]
 gi|311906024|gb|ADQ16465.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Leadbetterella byssophila DSM 17132]
          Length = 159

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 11/160 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F+LF  + I     V+  +N +Y+ + L+  F+  AG+F+  GAEF+A   +++Y
Sbjct: 1   MIDLVFWLFCLLTIGGGVYVLLSKNVLYAAYGLLSTFLGVAGMFVFAGAEFMAAAQIMIY 60

Query: 63  VGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VG +++  +F IM+      + V +  + RG L +    +LAA  IV      + S  GE
Sbjct: 61  VGGIMILLIFGIMLSTRRKYLVVEDAAQNRGILVAV---LLAAVWIVLIIKLRLLS--GE 115

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
              L+    +++ +G  L T +   LE+ G ILL++++GA
Sbjct: 116 PVELI----SIKKVGLALMTSHVLILELVGVILLMALVGA 151


>gi|289474452|gb|ADC97839.1| NADH dehydrogenase subunit 6 [Muricea purpurea]
          Length = 155

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLL 114

Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
           ++MIGAI+L  +           K L S  D
Sbjct: 115 VAMIGAILLAKQPNSPSLYNSHGKSLRSRQD 145


>gi|256396783|ref|YP_003118347.1| NADH dehydrogenase subunit J [Catenulispora acidiphila DSM 44928]
 gi|256363009|gb|ACU76506.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora
           acidiphila DSM 44928]
          Length = 287

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 99/191 (51%), Gaps = 18/191 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  FY+   +A++ +   V  +  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 25  EAFQFYVLGAVALLGALGTVFSKKAVHSALSLAMTMICLAMFYLAQGAYFLGVVQIVVYT 84

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCA---SNFMVF 115
           GA+++ FLF++M++ +      +E  + ++K   L +    +    LI+ A   +    F
Sbjct: 85  GAIMMLFLFVLMLVGVSSADSLVETIKGQRKLAVLAAIAFAV----LIMVALGRARLGTF 140

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIK 172
           +  G  +     G NV+N+  +++++Y +  E++  +L+ + +GA+V+  R R   R  +
Sbjct: 141 AGSGPAN---AGGGNVKNLADLIFSKYFWAFEVTSALLITAAVGAMVMTHRERLVARKSQ 197

Query: 173 RQDISKQLESN 183
           R+ +  ++ + 
Sbjct: 198 RELVEDRVRTG 208


>gi|268627916|gb|ACZ13382.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D1a]
 gi|268627918|gb|ACZ13384.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D2d]
 gi|268627919|gb|ACZ13385.1| NADH dehydrogenase subunit 6 [Lepidisis sp. D2e]
          Length = 74

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVY 59

Query: 63 VGAVIVFFLFIIMML 77
          VGA+ + FLF+IM++
Sbjct: 60 VGAIAILFLFVIMLI 74


>gi|270262806|ref|ZP_06191077.1| NADH dehydrogenase subunit J [Serratia odorifera 4Rx13]
 gi|270043490|gb|EFA16583.1| NADH dehydrogenase subunit J [Serratia odorifera 4Rx13]
          Length = 186

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 100/192 (52%), Gaps = 18/192 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL   +AI+++  V++  NP++++  LI + +  + +F  LGA F A + ++VY GA++
Sbjct: 5   FYLAGLIAIVATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIG---ILAAELIVCASNFMVFSAEGELSR 123
           V F+F++MML++   V +  ++R +L  S +IG   +  A L+V        S +G    
Sbjct: 65  VLFVFVVMMLNLGNAVQQ--QERDWLKPSVWIGPGLMSLALLVVLIVAIRSLSDQGISGE 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           +V    + + +G  L+  Y   +E++  +LL  ++ A          I R+    ++ SN
Sbjct: 123 MV----DAKAVGISLFGPYVLAVELASMLLLAGLVVAF--------HIGREHKPGEVLSN 170

Query: 184 PDNSIVMVKVKS 195
              S  M + KS
Sbjct: 171 APASSEMARRKS 182


>gi|78221390|ref|YP_383137.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter
           metallireducens GS-15]
 gi|78192645|gb|ABB30412.1| NADH dehydrogenase subunit J [Geobacter metallireducens GS-15]
          Length = 161

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 10/164 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+S  FY+ + + +  +   +T ++ ++++  L+ +F   A +F LLGA  VA+  +++Y
Sbjct: 1   MESALFYILAVVTVTGTAFAITEKHAVHAIVYLVTSFFALAVIFFLLGAPVVAIFEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEG 119
            GA++V FLF+IMMLD+   E A     R +  +  +G   LA+ L +  S      A G
Sbjct: 61  AGAIMVLFLFVIMMLDLGHPERARLPGIREWWPALALGAVTLASALALVVSRAPAIPAPG 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                  K   V+     L+ +Y   +E+    LL +++GA+ L
Sbjct: 121 -------KAIGVKEFALALFGKYGVAVEVISMQLLFALVGALYL 157


>gi|108798541|ref|YP_638738.1| NADH dehydrogenase subunit J [Mycobacterium sp. MCS]
 gi|119867641|ref|YP_937593.1| NADH dehydrogenase subunit J [Mycobacterium sp. KMS]
 gi|126434139|ref|YP_001069830.1| NADH dehydrogenase subunit J [Mycobacterium sp. JLS]
 gi|108768960|gb|ABG07682.1| NADH dehydrogenase subunit J [Mycobacterium sp. MCS]
 gi|119693730|gb|ABL90803.1| NADH dehydrogenase subunit J [Mycobacterium sp. KMS]
 gi|126233939|gb|ABN97339.1| NADH dehydrogenase subunit J [Mycobacterium sp. JLS]
          Length = 249

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 94/184 (51%), Gaps = 23/184 (12%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +  VV+    +YS   L    +  A L++   A F+ ++ +VVY 
Sbjct: 15  EAVVFWILGGIALIGALGVVSAPKAVYSAIFLATTMIALAVLYIAQEALFLGVVQIVVYT 74

Query: 64  GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           GAV++ FLF++M++ +D     V   R +R          +AA  +      ++ +  G 
Sbjct: 75  GAVMMLFLFVLMLVGVDNSESLVETIRGQR----------VAAIAVGVGFGVLLIAGIGT 124

Query: 121 LSRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RD 170
           +S   F G        NVE +  +++T+Y +  E++G +L+ + +GA+VL  R R   R 
Sbjct: 125 VSTSGFTGLPDANSSGNVEGLAALIFTRYLWAFELTGALLITAALGAMVLAHRERFEHRK 184

Query: 171 IKRQ 174
            +R+
Sbjct: 185 TQRE 188


>gi|258514496|ref|YP_003190718.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778201|gb|ACV62095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 169

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 21/174 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ + + + S+ LVV  +N ++SV  L  +F+  AG +L+L A F+AM+ ++VY GAV 
Sbjct: 10  FYILAAVTVGSAVLVVAFKNLVHSVLVLAISFLGVAGFYLMLNASFIAMVQILVYAGAVC 69

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGS-------FFIGILAAELIVCASNFMVFSAEGE 120
           +  +F IM+           ++ G  GS       F  G + A LI   +   V + E +
Sbjct: 70  IMVVFGIML----------TQQGGMSGSNGFNKQIFASGGVVALLIAVIAYLGVNAGEWQ 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +S      + V NI  ++ ++Y  P E++  +LL+++IGA+VL     +++K +
Sbjct: 120 ISAKQVPHDTVGNIAVLMLSKYMIPFEVAALLLLVALIGAVVL----AKEVKAK 169


>gi|221633758|ref|YP_002522984.1| NADH dehydrogenase i subunit j [Thermomicrobium roseum DSM 5159]
 gi|221155857|gb|ACM04984.1| nadh dehydrogenase i chain j [Thermomicrobium roseum DSM 5159]
          Length = 241

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 4/146 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++   F L + ++++ +  VV  RNP++S   L+ +F+N A ++L+  AEF+A++ ++
Sbjct: 1   MSLEVAVFSLLALVSVLGALGVVLARNPVHSAIGLVLSFLNVAAIYLVARAEFLAVVQVI 60

Query: 61  VYVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           VY GA+IV  +F+ M++  D   E    R  R   G      L AE+        V  A 
Sbjct: 61  VYAGAIIVLVVFVTMLVHPDDLPEFHGRRPLRLVTGLVLGAALLAEVAAAVLARGVRGAP 120

Query: 119 GELSRLVFK--GNNVENIGKVLYTQY 142
           G  +       G N   +G+VLY  Y
Sbjct: 121 GPWTDEAVAAVGGNTRALGQVLYVDY 146


>gi|75294069|sp|Q6YXQ0|NU6C_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|34494824|dbj|BAC85091.1| NADH dehydrogenase ND6 subunit [Physcomitrella patens subsp.
           patens]
          Length = 200

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 22/198 (11%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F++     I+ S  VV + N +YS F L   F   + L+  L A+FVA   +++Y
Sbjct: 10  LQEIIFFILEIGVILGSLGVVLLSNIVYSAFFLGLVFFCISLLYFALNADFVAAAQILIY 69

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF--------------LGSFFIGILAAELIVC 108
           VGAV V  +F +M+++      +P   + F              L SFF+ ++   L   
Sbjct: 70  VGAVNVLIVFAVMLIN------KPESLKIFPVWTVGDKITLAICLTSFFL-LVNIILNTS 122

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            SN  V +         F   NV+ IG +L TQY  P E+   +LL+++IGAIV+  R  
Sbjct: 123 WSNITVITESKGFLESNFT-QNVQRIGSLLLTQYLLPFELLSIVLLVALIGAIVIARREN 181

Query: 169 RDIKRQDISKQLESNPDN 186
                +    Q++ +P  
Sbjct: 182 LIETNKKKVLQIKKSPTT 199


>gi|18652802|gb|AAL76100.1| NADH dehydrogenase subunit VI [Hypocrea pseudokoningii]
          Length = 250

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 44/213 (20%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S +A++    V+  +NPI S+ SLI  F + +   +L G  F+    L+VY+GAV + 
Sbjct: 22  ILSVIALLFGIAVIVNKNPIASLLSLIGLFASISVYLILSGLTFIGFSYLIVYIGAVSIL 81

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL---AAELIVCASNFMVFSAEGELSRLVF 126
           FLFI+M+++I     +         + FI IL   A   ++  S  ++ S   +LS +++
Sbjct: 82  FLFILMLINIRTSELQSNNINSIPLALFITILLNYALFQLLPYSIAIINSYNNKLSNIIY 141

Query: 127 ---------------------------------KGN-----NVENIGKVLYTQYAYPLEI 148
                                             GN     ++  IG +LYT Y   L I
Sbjct: 142 YLPTSKYNDIITHISKNLDINTANVMFVTSNSWDGNMAETSHISTIGNILYTSYNMWLFI 201

Query: 149 SGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           + FILLL+M+GAI++ ++  R+   + IS  +E
Sbjct: 202 ASFILLLAMVGAIIITIKQERN---RGISSMVE 231


>gi|126021018|ref|NP_904241.2| NADH dehydrogenase subunit 6 [Physcomitrella patens subsp. patens]
          Length = 197

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 22/198 (11%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F++     I+ S  VV + N +YS F L   F   + L+  L A+FVA   +++Y
Sbjct: 7   LQEIIFFILEIGVILGSLGVVLLSNIVYSAFFLGLVFFCISLLYFALNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF--------------LGSFFIGILAAELIVC 108
           VGAV V  +F +M+++      +P   + F              L SFF+ ++   L   
Sbjct: 67  VGAVNVLIVFAVMLIN------KPESLKIFPVWTVGDKITLAICLTSFFL-LVNIILNTS 119

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            SN  V +         F   NV+ IG +L TQY  P E+   +LL+++IGAIV+  R  
Sbjct: 120 WSNITVITESKGFLESNFT-QNVQRIGSLLLTQYLLPFELLSIVLLVALIGAIVIARREN 178

Query: 169 RDIKRQDISKQLESNPDN 186
                +    Q++ +P  
Sbjct: 179 LIETNKKKVLQIKKSPTT 196


>gi|154175162|ref|YP_001407453.1| NADH dehydrogenase subunit J [Campylobacter curvus 525.92]
 gi|112803258|gb|EAU00602.1| transcriptional regulator, LuxR family [Campylobacter curvus
           525.92]
          Length = 177

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 97/179 (54%), Gaps = 15/179 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLFS +++    + V  +N ++++ +L    +    LF LLGAEF+ ++ ++VY 
Sbjct: 3   EAIAFYLFSALSLGCFGVSVFSKNALHAMSALAGGMIFICALFFLLGAEFLGVVQIIVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAE----PRKKRGFLGSFFIGILAAELIVCASNFMV---FS 116
           GAV+V + F +M  DI  +  E      K+  +  S FI +L   L++  S+ ++    +
Sbjct: 63  GAVMVLYAFSMMFFDISRDANESYSLASKRLIYTLSVFIALL---LVIVFSSPVIGQNLA 119

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           A+     L     N+E IG +L+ +Y    E++  +LL++M+  IVL +  + D K Q 
Sbjct: 120 AQQSAQEL----GNIELIGLMLFGKYLIAFELTAIMLLVAMVAGIVL-VHKKMDAKSQT 173


>gi|39998522|ref|NP_954473.1| NADH dehydrogenase I subunit J [Geobacter sulfurreducens PCA]
 gi|39985469|gb|AAR36823.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens PCA]
 gi|298507466|gb|ADI86189.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens KN400]
          Length = 163

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 89/168 (52%), Gaps = 6/168 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+ + + +I++ L +T ++ ++++  L+ +F   A +F  LGA  VA+  +++Y
Sbjct: 1   MEQALFYILAAVTVIATVLAITEKHAVHAIVYLVTSFFALAVIFFTLGAPVVAVFEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++V FLF+IMMLD+      P R +R  +  ++   LA   +  AS   +  +  + 
Sbjct: 61  AGAIMVLFLFVIMMLDLG----HPERARRPGIRDWWPA-LALGAVTLASALTLLISRAQA 115

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +    +   V+     L+ +Y   +E+    LL +++GA+ L  R  R
Sbjct: 116 ASAAGRAIGVKEFALTLFGKYGVAVEVISMQLLFALVGALYLAKRRER 163


>gi|222054370|ref|YP_002536732.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           FRC-32]
 gi|221563659|gb|ACM19631.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           FRC-32]
          Length = 161

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 90/171 (52%), Gaps = 14/171 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+ + + ++++   +T ++ ++++  L+ +F   A +F LL A  VA+  +++Y
Sbjct: 1   MEQALFYILAAVTVVATIFAITEKHAVHAIVYLVTSFFALAVIFFLLSAPLVAVFEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118
            GA++V F+F+IMMLD+    ++  PR    +      GI+ A  I  V A    V    
Sbjct: 61  AGAIMVLFMFVIMMLDLSHPEKIGLPRFAHWWPAILLGGIILAAFITLVMARQQAV---P 117

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           GE++ +      + +  + L+ +Y   +EI    LL +++GA  L L  RR
Sbjct: 118 GEVAEI-----GIRDFSRTLFQKYGIAVEIISMQLLFALVGA--LYLGRRR 161


>gi|300717643|ref|YP_003742446.1| NADH dehydrogenase I chain J [Erwinia billingiae Eb661]
 gi|299063479|emb|CAX60599.1| NADH dehydrogenase I chain J [Erwinia billingiae Eb661]
          Length = 184

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL   +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY GA++
Sbjct: 5  FYLCGLVAVLTTLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
          V F+F++MML++  E  + +++     + +IG
Sbjct: 65 VLFVFVVMMLNLG-ESVQAQEREWLKPTVWIG 95


>gi|289641418|ref|ZP_06473582.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia
           symbiont of Datisca glomerata]
 gi|289508754|gb|EFD29689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia
           symbiont of Datisca glomerata]
          Length = 277

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 89/175 (50%), Gaps = 10/175 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++ + +A++++  +V  RN ++    L+      A  ++L  A F+  + +VVY 
Sbjct: 20  EAATFWVLAPVAVLAALGMVLARNAVHGALLLVTNLFCLAVFYMLQDAPFLGFVQIVVYT 79

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILAAELIVCASNFMVFSA 117
           GA++V FLF++M++ +D   +     RG       LG  F G+L   +     N    + 
Sbjct: 80  GAIMVLFLFVLMLVGVDSSDSLVETLRGQRVAAIVLGVGFAGLLVFPIGGVIDNGTTAAG 139

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               +     G N++ I ++L+T Y +  EI   +L+++ +GA++L  R R D K
Sbjct: 140 LAAAN----DGGNIQAIARLLFTDYVFAFEIISALLIIAAVGAMILGHRERVDGK 190


>gi|317050800|ref|YP_004111916.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Desulfurispirillum indicum S5]
 gi|316945884|gb|ADU65360.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfurispirillum indicum S5]
          Length = 172

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L FY+     + S   ++  RN + SV  L+  F+  AG+F LL AEF+ ++ ++VY G 
Sbjct: 8   LVFYMLVVTILASGLAMIFTRNIVASVTCLVGTFLGVAGIFFLLNAEFIGVVQIMVYAGG 67

Query: 66  VIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           + +  +F IM+ D  D EV  P+     L +   GIL   +++  S      ++ E    
Sbjct: 68  LSLLIIFAIMLTDPRDHEVDRPKSGNVMLAAAVSGILFIMMVIAISTAQWSFSDAE---- 123

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                    IG   +T Y  P  ++  +L +++ GAIVL  +   D K
Sbjct: 124 PLTTQPAVYIGIQYFTNYIVPFYLAAILLSMALTGAIVLAKKEGEDEK 171


>gi|297625181|ref|YP_003706615.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Truepera
           radiovictrix DSM 17093]
 gi|297166361|gb|ADI16072.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Truepera
           radiovictrix DSM 17093]
          Length = 184

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 94/179 (52%), Gaps = 1/179 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F+L + + ++ +  V+T+R P+++  +L+   +  A  ++ L A F+A I ++VY GA
Sbjct: 2   LTFFLLAAVMVLGALGVITLRQPVHAALALVGTLLTLAVTYVTLQAHFLAAIQVIVYAGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRL 124
           ++V FLF+IM+L+++ +    R       ++  G++AA  +   +        + ++   
Sbjct: 62  IMVLFLFVIMLLNVEGDEGTVRLAWVRPAAYLTGVVAAAGVALTAFLDARQLPDAQVITA 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
              G     +G VL+ Q+    ++ G +LL  ++GA+ L+ R  R+   +++  + E  
Sbjct: 122 ALAGGGAGALGGVLFNQFVLAFQLVGVLLLTGIVGAVSLVERSAREKGDEEVFGEPERE 180


>gi|311897899|dbj|BAJ30307.1| putative NADH-quinone oxidoreductase subunit J [Kitasatospora setae
           KM-6054]
          Length = 283

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 97/193 (50%), Gaps = 28/193 (14%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +A+  +  ++ +R  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 6   EAVQFWVLAVIAVGGALGMLLMRKAVHSALCLAATMIALAVCYLAQGAVFLGVVQIVVYT 65

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKR-------------GFLGSFFIGILAAELIVCAS 110
           GA+++ FLF++M+  + +  A+  K++             GF G   +  LA   +   +
Sbjct: 66  GAIMMLFLFVVML--VGVSAADSLKEQLKGQRVAAALCGLGF-GVLLVAGLANAKLRDFT 122

Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                +AEG          NV+ + ++++T+Y +  E++  +L+ + +GA+VL   HR  
Sbjct: 123 GLAGANAEG----------NVQGLARLIFTKYVWAFEVTSALLITAAVGAMVLT--HREK 170

Query: 171 IKRQDISKQLESN 183
           +K     +QL + 
Sbjct: 171 VKAPPTQRQLAAQ 183


>gi|254819281|ref|ZP_05224282.1| NADH dehydrogenase subunit J [Mycobacterium intracellulare ATCC
           13950]
          Length = 274

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 95/187 (50%), Gaps = 16/187 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +  VV   N +YS   L    +  A  +++  A F+ ++ +VVY 
Sbjct: 29  EAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVVYT 88

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF++M++ +D   +     RG         +AA         ++ +A G+++ 
Sbjct: 89  GAVMMLFLFVLMLIGVDSAESLRETLRGQR-------VAAVAAGVGFGILLIAAIGDVAT 141

Query: 124 LVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             F G        NVE +  +++++Y +  E++  +L+ + +GA+VL   HR   +R+  
Sbjct: 142 GGFAGLTTANAAGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLA--HRERFERRKT 199

Query: 177 SKQLESN 183
            ++L   
Sbjct: 200 QRELSQE 206


>gi|48474399|sp|Q85CT7|NU6C_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|27807929|dbj|BAC55404.1| NADH dehydrogenase ND6 subunit [Anthoceros formosae]
 gi|27808102|dbj|BAC55504.1| NADH dehydrogenase ND6 subunit [Anthoceros formosae]
          Length = 200

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 26/195 (13%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF       I  S  VV + N +YS F L   FV  + L+LLL A+FVA   +++YVGAV
Sbjct: 14  FFVFIELGLIFGSLGVVFLTNIVYSAFLLGLVFVCISFLYLLLDADFVATAQILIYVGAV 73

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA---------------SN 111
            +  +F +M+++      +P+  + FL S+ +G     LI+C                SN
Sbjct: 74  NILIVFAVMLIN------KPQSLQ-FLPSWTVGD-TITLILCTSLFFLLISMILSISWSN 125

Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
               +   ++   V K ++V+ IG  L   +  P E+   +LL+++IGAI +  R  + +
Sbjct: 126 IFSIAQSNKIGEQVLK-SSVQGIGSSLLIDFLLPFELLSIVLLVALIGAITIA-RREKKV 183

Query: 172 KRQDISKQLESNPDN 186
           K Q  ++ L+   D+
Sbjct: 184 KLQK-NRTLQVTKDS 197


>gi|289474437|gb|ADC97829.1| NADH dehydrogenase subunit 6 [Alaskagorgia sp. USNM 1115602]
          Length = 155

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 7/151 (4%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLL 114

Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
           ++MIGAI+L  +           + L S  D
Sbjct: 115 VAMIGAILLAKQPNSPFLYNSHGESLRSRQD 145


>gi|90200379|ref|NP_777467.2| NADH dehydrogenase subunit 6 [Anthoceros formosae]
          Length = 197

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 26/198 (13%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF       I  S  VV + N +YS F L   FV  + L+LLL A+FVA   +++YVGAV
Sbjct: 11  FFVFIELGLIFGSLGVVFLTNIVYSAFLLGLVFVCISFLYLLLDADFVATAQILIYVGAV 70

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA---------------SN 111
            +  +F +M+++      +P+  + FL S+ +G     LI+C                SN
Sbjct: 71  NILIVFAVMLIN------KPQSLQ-FLPSWTVGD-TITLILCTSLFFLLISMILSISWSN 122

Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
               +   ++   V K ++V+ IG  L   +  P E+   +LL+++IGAI +  R  + +
Sbjct: 123 IFSIAQSNKIGEQVLK-SSVQGIGSSLLIDFLLPFELLSIVLLVALIGAITIA-RREKKV 180

Query: 172 KRQDISKQLESNPDNSIV 189
           K Q  ++ L+   D+ I+
Sbjct: 181 KLQK-NRTLQVTKDSFIL 197


>gi|145298715|ref|YP_001141556.1| NADH dehydrogenase subunit J [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851487|gb|ABO89808.1| NADH dehydrogenase I, J subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 183

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 15/184 (8%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L FY  + +A+ S+  V++  NP++++ +LI + +  A +F  LGA F   + ++VY GA
Sbjct: 3   LAFYAAALVAVYSTLRVISTSNPMHALLNLIISIIAVAMIFFCLGASFAGALQVIVYAGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEGELSR 123
           ++V F+F++MML++    A+ +K   +L     G  A  + +++    + +    G   +
Sbjct: 63  IMVLFVFVVMMLNLGSSEAQEKK---WLTPMTWGGPALLSLILLGFLAYGILGVTG--GQ 117

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           L     + + +G  L+  Y   +E++  +LL  ++ A          + R+D S ++ S 
Sbjct: 118 LGLSDVSAKEVGIALFGPYVLAVELASILLLAGLVTA--------YHLGREDKSGEVLSV 169

Query: 184 PDNS 187
           P  S
Sbjct: 170 PRAS 173


>gi|159901497|ref|YP_001547744.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894536|gb|ABX07616.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 220

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 17/171 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + + + S  +VVTVRN I+S   LI +F+  A L+LL+ AEF+A++ ++VY GAV 
Sbjct: 9   FIVIALLTLGSGIMVVTVRNIIHSALWLIASFIGVAALYLLMEAEFLAVVQILVYAGAVS 68

Query: 68  VFFLFIIMML-DIDIEVAEPRKKRGF------LGSFFIGILAAELIVCASNFMVFSAEGE 120
           +  LF IM+   +  E      +R +      LG F  G++   L    S +   S   +
Sbjct: 69  ILVLFAIMLTRQVTGEGVRVVFERWWVALLIALGLF--GVIVPTLWQHGSTWEEASKLAQ 126

Query: 121 LSRLVFKGN--------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           +     +G             IG+    +Y  P E+   +LL+++IGAIV+
Sbjct: 127 VGPAPVEGTAAAGLQVATATEIGRSFMGEYLLPFEVISILLLMALIGAIVI 177


>gi|330830053|ref|YP_004393005.1| NADH dehydrogenase I subunit J [Aeromonas veronii B565]
 gi|328805189|gb|AEB50388.1| NADH dehydrogenase I, J subunit [Aeromonas veronii B565]
          Length = 183

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 54/83 (65%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          L FY  + +AI S+  V++  NP++++ +LI + +  A +F  LGA F   + ++VY GA
Sbjct: 3  LAFYASALVAIYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGAAFAGALQVIVYAGA 62

Query: 66 VIVFFLFIIMMLDIDIEVAEPRK 88
          ++V F+F++MML++    A+ +K
Sbjct: 63 IMVLFVFVVMMLNLGSAQAQEKK 85


>gi|208435163|ref|YP_002266829.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori G27]
 gi|208433092|gb|ACI27963.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori G27]
          Length = 166

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 20/170 (11%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYVGAVIV + F +M  +
Sbjct: 2   ALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFGMMFFN 61

Query: 79  IDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-LSRLVFKG------NN 130
              EV E ++    L +   G+ L   LI+ A +       GE LS  V          N
Sbjct: 62  SAAEVIERKQSPKILCALSFGVALLLTLILSAPSI------GENLSNQVNSNAIDAQIPN 115

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174
           ++ IG VL+T Y  P E +  +LL++M+G I   ++      H + IK  
Sbjct: 116 IKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 165


>gi|156743325|ref|YP_001433454.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus
           castenholzii DSM 13941]
 gi|156234653|gb|ABU59436.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus
           castenholzii DSM 13941]
          Length = 170

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 4/149 (2%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N I+S   L+  FV  + L++LL A F+ +I L+VY GA+IV FLF++M+L    E AE 
Sbjct: 25  NAIHSAIFLLINFVAISVLYVLLYAPFLFVIQLIVYAGAIIVLFLFVVMLL--GAERAED 82

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-NNVENIGKVLYTQYAYP 145
            ++R F     +G+  A +++    ++V       + +  +     E I + L+T Y  P
Sbjct: 83  TRER-FAWQRPLGLTLAAILLGLIGYIVLRGPASGAMVADQQFAAPERIAETLFTTYLLP 141

Query: 146 LEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            EI+ F+LL +++G +VL +       R+
Sbjct: 142 FEITAFLLLAAIVGVVVLHMSGNHAESRE 170


>gi|223936523|ref|ZP_03628434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium
           Ellin514]
 gi|223894687|gb|EEF61137.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium
           Ellin514]
          Length = 191

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 9/192 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + + ++S    +++RN ++   SL   F   A ++L L A+FV    ++VY+GAV 
Sbjct: 5   FAIIAALTLVSGIAAMSLRNLVHCALSLAITFAGLAAMYLQLDAQFVGFAQILVYIGAVA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126
           +  +F I +L    E  +P   R    S+ +GI +A  +       +  S   +      
Sbjct: 65  ILIVFAI-LLTRSSEAPQPVISR----SWIVGIAIAVAVFGVMIRLIASSPIAQRGWPEK 119

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK---RQDISKQLESN 183
            G  V+ IG  L T++  PLE  G +L ++ IGA+++ +  +       R + S  +   
Sbjct: 120 PGPTVKQIGDQLMTRFVLPLEAMGLLLTVATIGAVIIAMNEKTKAGLQLRGNDSHPVPGT 179

Query: 184 PDNSIVMVKVKS 195
              S +M  +K+
Sbjct: 180 TPQSELMKDLKT 191


>gi|119485497|ref|ZP_01619825.1| NADH dehydrogenase subunit J [Lyngbya sp. PCC 8106]
 gi|119457253|gb|EAW38379.1| NADH dehydrogenase subunit J [Lyngbya sp. PCC 8106]
          Length = 232

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 25/196 (12%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F L + M +  +  VV + N +YS F L   F++ AGL++LL A+FVA   +++YV
Sbjct: 32  QIISFGLLTVMMLGGALGVVLLENIVYSAFLLGGVFMSMAGLYILLNADFVAAAQVLIYV 91

Query: 64  GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---- 116
           G+V V  LF IM+++       +  P  ++G           A  +VC+  F + S    
Sbjct: 92  GSVNVLILFGIMLVNKQESFKALPNPWVRKG-----------ATALVCSGLFALLSTMVL 140

Query: 117 AEGELSRLVFKGNNVEN----IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +   +S+        E+    IG+  +T +  P E++   LL++M+GAI+L    RRD  
Sbjct: 141 STPWMSQATVSVPPEESSIMIIGQHFFTDFLLPFELASVFLLMAMVGAIIL---ARRDFI 197

Query: 173 RQDISKQLESNPDNSI 188
              I ++    P  ++
Sbjct: 198 PDLIPEEKIQTPGWTL 213


>gi|289606445|emb|CBI61288.1| putative NADH dehydrogenase subunit 6 [Sordaria macrospora]
          Length = 238

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 45/202 (22%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +AI     V+  +NPI SV  LI  F + +   +LLG  F+ +  L+VY+GA+ + FL
Sbjct: 19  SILAIFCGISVIVNKNPIISVLFLIGLFASVSSYLILLGLSFIGLAYLIVYIGAISILFL 78

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------------------------- 103
           FI+M+++I I   +         +  +GI  +                            
Sbjct: 79  FILMLINIRISELQSNTNNSIPLTIILGISLSYSLFQLLPYDIAILSNFSSNINNNLYNL 138

Query: 104 ----------ELIV-----CA--SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPL 146
                     ELI      C+  +N ++F         + + N++  IG V+Y+ Y+  L
Sbjct: 139 SMNKQNNGNLELIPLPQFHCSLKNNDLLFVTSKIWDGNLAESNHITTIGNVMYSNYSIWL 198

Query: 147 EISGFILLLSMIGAIVLMLRHR 168
            ++ FILLL+M+G+IV++++  
Sbjct: 199 FLASFILLLAMVGSIVIIMKSN 220


>gi|22298211|ref|NP_681458.1| NADH dehydrogenase subunit J [Thermosynechococcus elongatus BP-1]
 gi|22294390|dbj|BAC08220.1| NADH dehydrogenase subunit 6 [Thermosynechococcus elongatus BP-1]
          Length = 200

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 11/168 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++ F+  +   II++  VV + N +YS F L   F++ AGL++L+ A+FV+   +++YV
Sbjct: 8   QTITFFALAAAVIIAALGVVLLDNVVYSAFLLGGVFLSIAGLYILMNADFVSAAQILIYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKR----GFLGSFFIGILAAELIVCASNFMVFSAEG 119
           GAV V  LF IM+++   E   P   R    G      +G+ A          M+     
Sbjct: 68  GAVNVLILFAIMLVN-KRETYTPVPGRWLRQGGAAVVSLGVFA------LLTKMILQTPW 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +LS +    +++  IG+  ++ +  P E++  +LL+++IGA+VL  R 
Sbjct: 121 QLSSVPPTPDSITTIGQHFFSDFLLPFELASVLLLMALIGAVVLARRE 168


>gi|270308200|ref|YP_003330258.1| NADH:quinone oxidoreductase subunit 6 (chain J) [Dehalococcoides
           sp. VS]
 gi|270154092|gb|ACZ61930.1| NADH:quinone oxidoreductase subunit 6 (chain J) [Dehalococcoides
           sp. VS]
          Length = 160

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ +   I S+ LVV V+N  +S   LI  F++ AG+FLLL A+F+A + +++Y+GA+ 
Sbjct: 5   FWIIAITCIASALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIGAIS 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V  +  I ML  +++      K      F + +L   +      +M+ S+    S     
Sbjct: 65  VLIILAI-MLTREVQRGNLTNKLKIPALFVVTVLGGVM-----TYMLISSNWTSSDAPAP 118

Query: 128 GNNVENIGKVLYTQYAYPLE--ISGFILLLSMIGAIVLMLRHRRD 170
                 + ++L+    + L   I+G ILL+++IGAIVL+    RD
Sbjct: 119 STTTAGLAEMLFGSDGFGLGVLITGVILLVAIIGAIVLV----RD 159


>gi|108761433|ref|YP_629344.1| NADH dehydrogenase I subunit J [Myxococcus xanthus DK 1622]
 gi|108465313|gb|ABF90498.1| NADH dehydrogenase I, J subunit [Myxococcus xanthus DK 1622]
          Length = 168

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 10/159 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ + F  F+ + ++S+  V+  R+PI S  +L+  F   AG+++LL A  VA++ ++
Sbjct: 1   MNIELILFGAFALLTLLSAGTVIFARSPINSAMALVSTFFFMAGIYVLLWAHTVAVMQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDI--DIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVF 115
           VY GA++V FLF+IM+L++       +P   R   G+  +G   +LA  L+   +     
Sbjct: 61  VYAGAIMVLFLFVIMLLNLGESPTRGKPTVARVAGGAATVGLFAVLAIILLKLPAEPATL 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S   + S        +  +G+V++TQ+ +P E    +LL
Sbjct: 121 STGAQASF-----GTIATMGQVIFTQWLFPFEAVSLLLL 154


>gi|146312466|ref|YP_001177540.1| NADH dehydrogenase subunit J [Enterobacter sp. 638]
 gi|145319342|gb|ABP61489.1| NADH dehydrogenase subunit J [Enterobacter sp. 638]
          Length = 184

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 102/185 (55%), Gaps = 20/185 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++    AE  ++R +L    +IG  IL+A ++V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLG--GAEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G  +  + +G  L+  Y   +E++  +LL  ++ A          + R++ + ++ S
Sbjct: 118 GIDGTPISAKEVGIALFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169

Query: 183 NPDNS 187
           N  + 
Sbjct: 170 NRTDD 174


>gi|169629229|ref|YP_001702878.1| NADH dehydrogenase subunit J [Mycobacterium abscessus ATCC 19977]
 gi|169241196|emb|CAM62224.1| NADH-quinone oxidoreductase, J subunit NuoJ [Mycobacterium
           abscessus]
          Length = 259

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 14/185 (7%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F++   +A++ +  V+     +YS   L    V  A  F+  GA F+ +  +VV
Sbjct: 23  TWEGVTFWVLGAIAVLGALGVIAAPKAVYSAIFLAMTMVILAVFFVAQGALFLGVAQVVV 82

Query: 62  YVGAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           Y GAV++ FLF++M + +D     +E    ++          GILA   I  AS   VF 
Sbjct: 83  YTGAVMMLFLFVLMFVGVDSSDSLVETLPGQRVGAVAAGLGFGILAIASIGNAST-TVFV 141

Query: 117 AEGEL-SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             G+  SR      NVE + + ++  Y +  E++G +L+ + IGA+VL   HR  + +  
Sbjct: 142 GLGQANSR-----GNVEGLAERIFIDYLWAFELTGALLITATIGAMVLA--HREKLGQTG 194

Query: 176 ISKQL 180
             ++L
Sbjct: 195 GQREL 199


>gi|33519936|ref|NP_878768.1| NADH dehydrogenase I chain J [Candidatus Blochmannia floridanus]
 gi|33504282|emb|CAD83174.1| NADH dehydrogenase I chain J [Candidatus Blochmannia floridanus]
          Length = 183

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 8/168 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AII++ LV+   NPIY++  LIF+ +  +     L A F   I +++Y GA++
Sbjct: 5   FYVSGIIAIIATILVIISNNPIYALLYLIFSLLCTSCNLFSLNASFAGSIEIIIYAGAIM 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           V F+F IMM D+ +I +    K+  FL S  I +  A L++ A   +V  +  +++    
Sbjct: 65  VLFMFSIMMFDMKNIILNVCNKEYTFL-SLRICV-GASLLISALLIIVLFSILQITNCFI 122

Query: 127 KGNN----VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            G N    ++ IG  L+  Y   +E++ F LLLS + A++ + +  +D
Sbjct: 123 DGINCVIDIKQIGITLFGPYMLIVEVASF-LLLSALIAVIHIAQEDKD 169


>gi|56791558|gb|AAW30317.1| NADH dehydrogenase subunit 6 [Eichhornia crassipes]
          Length = 159

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 11/138 (7%)

Query: 53  FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN 111
           F AMI  VV++GA+ V FLF++MM +I I        R    S  IG IL  E+     N
Sbjct: 21  FSAMIFPVVHIGAIAVSFLFVVMMFNIQIAEIHEXVLRYLPVSGIIGLILWWEMFFILDN 80

Query: 112 FMV-----FSAEGELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
             +           L   V  G      N+E +G +LYT Y+    +   ILL++MIGAI
Sbjct: 81  ETIPLLPTHRNTTSLRYTVHAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAI 140

Query: 162 VLMLRHRRDIKRQDISKQ 179
           VL +     +KRQD+ ++
Sbjct: 141 VLTMHRTTKVKRQDVFRR 158


>gi|111022881|ref|YP_705853.1| NADH dehydrogenase subunit J [Rhodococcus jostii RHA1]
 gi|110822411|gb|ABG97695.1| probable NADH dehydrogenase subunit J [Rhodococcus jostii RHA1]
          Length = 269

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 16/187 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++ + +A+I +  VV+    +YS   L    +  A  ++  GA F+ ++ +VVY 
Sbjct: 19  EGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIAQGALFLGVVQIVVYT 78

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF++M++ +D   +     R   G     I A           + SA    S 
Sbjct: 79  GAVMMLFLFVLMLIGVDSSESLVENLR---GQRVAAIAAGLGFGLLLIGGIGSA----SV 131

Query: 124 LVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             F G        NVE + ++++ +Y +  E++G +L+ + IGA+VL   HR   +R+  
Sbjct: 132 SAFTGLDQANAAGNVEGLAELVFVRYVWAFELTGALLITATIGAMVLA--HRERFERRKD 189

Query: 177 SKQLESN 183
            ++L  +
Sbjct: 190 QRELSQD 196


>gi|312200058|ref|YP_004020119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp.
           EuI1c]
 gi|311231394|gb|ADP84249.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp.
           EuI1c]
          Length = 287

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V ++L F++ + +A+I +  +V  +  ++    L+      A  +LL  A F+  + +VV
Sbjct: 17  VGETLTFWIIAPIAVIGALGMVFAKKAVHGALMLVANLFCVAVCYLLQDAPFLGFVQIVV 76

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILAAELIVCASNFMVF 115
           Y GA++V FLF++M++ ++   +     RG       LG  F G+L   L     N    
Sbjct: 77  YTGAIMVLFLFVLMLIGVESSESLVETLRGQRVAAVVLGLGFAGLLVFPLGKAIKN---Q 133

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIK 172
            A G        G N+  I ++L+TQY +  E    +L+++ +GA++L  R R   R  +
Sbjct: 134 PAAGVADVNQAGGGNIHAIARLLFTQYVFAFEAVSALLVIAAVGAMILSHRERTGPRPSQ 193

Query: 173 RQDISKQLESN 183
           ++ + +++   
Sbjct: 194 KETLRRRIAEG 204


>gi|242239960|ref|YP_002988141.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech703]
 gi|242132017|gb|ACS86319.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech703]
          Length = 181

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 30/191 (15%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY GA++
Sbjct: 5   FYATAIIAVLATLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRK---KRG-FLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           V F+F++MML++   V +  K   K G ++G    GIL+  L+            G + +
Sbjct: 65  VLFVFVVMMLNLGHSVVDQEKAWLKPGVWIGP---GILSLVLL------------GVIIK 109

Query: 124 LVFKGN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR--DIK 172
            +F+ N         + + +G  L+  Y   +E++  +LL  ++ A  +    +R  D+ 
Sbjct: 110 GIFRLNGQDISGGMIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGGDVL 169

Query: 173 RQDISKQLESN 183
            +D  K  E  
Sbjct: 170 AKDDKKSTEER 180


>gi|118465874|ref|YP_883194.1| NADH dehydrogenase subunit J [Mycobacterium avium 104]
 gi|254776464|ref|ZP_05217980.1| NADH dehydrogenase subunit J [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|118167161|gb|ABK68058.1| NADH dehydrogenase subunit j [Mycobacterium avium 104]
          Length = 274

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +  VV   N +YS   L    +  A  +++  A F+ ++ +VVY 
Sbjct: 29  EAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVVYT 88

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG-----FLGSFFIGILAAELIVCASNFMVFSAE 118
           GAV++ FLF++M++ +D   +     RG            GIL   LI    N     A 
Sbjct: 89  GAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVAAGVGFGIL---LIAAVGNV----AS 141

Query: 119 GELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           G  + L       NVE +  +++++Y +  E++  +L+ + +GA+VL   HR   +R+  
Sbjct: 142 GGFAGLTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLA--HRERFERRKT 199

Query: 177 SKQLE 181
            ++L 
Sbjct: 200 QRELS 204


>gi|150017831|ref|YP_001310085.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904296|gb|ABR35129.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Clostridium
           beijerinckii NCIMB 8052]
          Length = 163

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 27/167 (16%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+  +F+ I  +  VV  +N I+S  S+I  F+  A +F+LL A+F+A+  +++Y GA+ 
Sbjct: 7   FWPIAFLIIAFAIGVVYSKNIIHSALSMILTFIGIAVVFILLQADFLALAQILIYAGAIS 66

Query: 68  VFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +  +F IM+    D++ + P  K  + G          L  C   F      G ++RL+ 
Sbjct: 67  ILIVFAIMLTRKNDMKNSNPFNKLRWTG----------LAFCLGFF------GLITRLIL 110

Query: 127 KGN------NVEN----IGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           + N      N+EN    I    +  Y  P E+S  +LL++++GAI+L
Sbjct: 111 RSNFTYKNLNIENTISAIADGFFGNYMIPFEVSALLLLIALVGAIIL 157


>gi|133900542|gb|ABO41437.1| NADH dehydrogenase subunit 6 [Rafflesia pricei]
          Length = 181

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 15/173 (8%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F   +GL LLLG +  AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRETSGLLLLLGLDLSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL--------VFKGN 129
           I        R    S  IG IL  E+  I+      +   + + + L        V    
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILYKETLPLLPTQRKTTSLRYTVYAEKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
           ++E +G +LYT Y     +   +LL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 123 HLETLGNLLYTYYFVWFLVPSLLLLVAMIGAIVLTM-HRTTHSAVKRQDLFRR 174


>gi|298346127|ref|YP_003718814.1| NADH dehydrogenase subunit J [Mobiluncus curtisii ATCC 43063]
 gi|304390113|ref|ZP_07372067.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236188|gb|ADI67320.1| NADH dehydrogenase subunit J [Mobiluncus curtisii ATCC 43063]
 gi|304326595|gb|EFL93839.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 324

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 18/168 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++F    S +A+I++  V      +++   ++   V  AG++  +GAEF+  + +VVY 
Sbjct: 18  QTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVVYT 77

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--------GILAAELIVCASNFMVF 115
           GA+++ FLF+IM++ +   V  PR  +  +G+           GI+A   IV A N  V 
Sbjct: 78  GAIMMMFLFVIMLVGVQA-VDSPRDSK--VGTVAAAVLLVVAFGIMA---IVAAVNTTV- 130

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
              G  +R     N V    +V+ T YA PLE+   +L+++ +GA+ L
Sbjct: 131 --NGAPARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSL 175


>gi|315657370|ref|ZP_07910252.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491842|gb|EFU81451.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 324

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 18/168 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++F    S +A+I++  V      +++   ++   V  AG++  +GAEF+  + +VVY 
Sbjct: 18  QTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVVYT 77

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--------GILAAELIVCASNFMVF 115
           GA+++ FLF+IM++ +   V  PR  +  +G+           GI+A   IV A N  V 
Sbjct: 78  GAIMMMFLFVIMLVGVQA-VDSPRDSK--VGTVAAAVLLVVAFGIMA---IVAAVNTTV- 130

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
              G  +R     N V    +V+ T YA PLE+   +L+++ +GA+ L
Sbjct: 131 --NGAPARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSL 175


>gi|315654706|ref|ZP_07907612.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii ATCC
           51333]
 gi|315491170|gb|EFU80789.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii ATCC
           51333]
          Length = 324

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 18/168 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++F    S +A+I++  V      +++   ++   V  AG++  +GAEF+  + +VVY 
Sbjct: 18  QTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVVYT 77

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--------GILAAELIVCASNFMVF 115
           GA+++ FLF+IM++ +   V  PR  +  +G+           GI+A   IV A N  V 
Sbjct: 78  GAIMMMFLFVIMLVGVQA-VDSPRDSK--VGTVAAAVLLVVAFGIMA---IVAAVNTTV- 130

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
              G  +R     N V    +V+ T YA PLE+   +L+++ +GA+ L
Sbjct: 131 --NGAPARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSL 175


>gi|317048931|ref|YP_004116579.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pantoea
          sp. At-9b]
 gi|316950548|gb|ADU70023.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pantoea sp.
          At-9b]
          Length = 183

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL   +A++++  V+T  NP++++  LI + ++ AG+F  +GA F   + ++VY GA++
Sbjct: 5  FYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
          V F+F++MML++  +  + +++     S +IG
Sbjct: 65 VLFVFVVMMLNLG-KSQQDQEREWLKPSLWIG 95


>gi|268627909|gb|ACZ13376.1| NADH dehydrogenase subunit 6 [Isidella sp. I3b]
          Length = 70

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MNSLFM-IFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63 VGAVIVFFLFI 73
          VGA+ + FLF+
Sbjct: 60 VGAIAILFLFV 70


>gi|189500533|ref|YP_001960003.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium
           phaeobacteroides BS1]
 gi|189495974|gb|ACE04522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium
           phaeobacteroides BS1]
          Length = 174

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 15/150 (10%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FYLF+ + + S+  VV  RN IYS FSL+F F   A L++ L A+F+A+  ++VYVG
Sbjct: 7   TVIFYLFAAVTVFSAAFVVFSRNIIYSAFSLLFTFFGVAALYVFLSADFIAVTQIMVYVG 66

Query: 65  AVIVFFLF------IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
            ++V  LF       IMM D+  +V         L S   G++            V  AE
Sbjct: 67  GILVLLLFGVMFTNKIMMTDLKTDVLNILPGIVLLLSITGGLIYT---------FVARAE 117

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
              S +  +G+ VE IG    ++Y  P E+
Sbjct: 118 WFTSTVQLQGSVVEKIGFETMSRYVLPFEM 147


>gi|257852606|gb|ACV71315.1| NADH dehydrogenase subunit 6 [Euphorbia polychroma]
          Length = 161

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 24/160 (15%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI---- 81
           +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I I    
Sbjct: 3   KNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIH 62

Query: 82  -EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            EV       G +G  F            I +L  +    +  + V++ +      V   
Sbjct: 63  EEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK------VRSW 116

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            N+E +G +LYT Y+    +   ILL++MIGAIVL + HR
Sbjct: 117 TNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HR 155


>gi|41409308|ref|NP_962144.1| NADH dehydrogenase subunit J [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398128|gb|AAS05758.1| NuoJ [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 274

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +  VV   N +YS   L    +  A  +++  A F+ ++ +VVY 
Sbjct: 29  EAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVVYT 88

Query: 64  GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GAV++ FLF++M++ +D      E    ++          GIL   LI    N     A 
Sbjct: 89  GAVMMLFLFVLMLIGVDSAESLRETLRGQRVAAVAAGVGFGIL---LIAAVGNV----AS 141

Query: 119 GELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           G  + L       NVE +  +++++Y +  E++  +L+ + +GA+VL   HR   +R+  
Sbjct: 142 GGFAGLTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLA--HRERFERRKT 199

Query: 177 SKQLE 181
            ++L 
Sbjct: 200 QRELS 204


>gi|7524984|ref|NP_050082.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum]
 gi|6093583|sp|Q37314|NU6M_DICDI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|699594|dbj|BAA03936.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum]
 gi|4958887|dbj|BAA78064.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum]
          Length = 226

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 32/186 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           NPIYS+ +LI  +   A + L +  EF+A I ++V VGA+ V FLFI+MM++I+I E+ E
Sbjct: 26  NPIYSILNLIVIYGCYASILLTVEMEFLACIYILVNVGAIAVLFLFIVMMININIVEIQE 85

Query: 86  PRKKR------GFLGSF-FIGIL--------AAELIVCASNFMVFSAEGELS-------- 122
             KK       G +G    +GIL          E+I   S F++ S   +L         
Sbjct: 86  TMKKYNIYMIVGIIGVVGLLGILITNYQIRIKEEVIADFSMFLINSEVVQLQATPSYLDF 145

Query: 123 -RLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAI------VLMLRHRRDIKRQ 174
             L  +  ++  +G  V+Y  Y+    ++  ILL+ M+G I      ++  R   + +RQ
Sbjct: 146 YSLFVETTDIRTMGSNVIYGSYSIWFIMACIILLIGMVGVIYITEDLIIEKRTLNERRRQ 205

Query: 175 DISKQL 180
           DI+ Q+
Sbjct: 206 DINSQV 211


>gi|148243378|ref|YP_001228535.1| NADH dehydrogenase subunit J [Synechococcus sp. RCC307]
 gi|147851688|emb|CAK29182.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. RCC307]
          Length = 199

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 11/155 (7%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV-AE 85
           N +Y+ F L   F++ AGL+L+L A F+A   +++YVGAV V  LF IM+++    + A 
Sbjct: 32  NIVYAAFLLGGVFLSVAGLYLMLNASFIAAAQILIYVGAVNVLILFAIMLVNKKEAMGAS 91

Query: 86  PRK--KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143
           P    +R       IG+ A  L V  S          +       + V  +G+  ++ Y 
Sbjct: 92  PGVGLRRVLSTGVCIGLFALLLRVAFSTPWATPGPAAIGE-----DAVIRLGEHFFSDYL 146

Query: 144 YPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            P E++  +LL++MIGAIVL    RRD+   DI  
Sbjct: 147 LPFELASVLLLMAMIGAIVL---ARRDVLATDIGT 178


>gi|225874135|ref|YP_002755594.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196]
 gi|225793660|gb|ACO33750.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196]
          Length = 172

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 10/174 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ +F+ + S+   +T+   I+   +L+ AF   A L+L LGAEF  +  L+VYVGAV 
Sbjct: 5   FWILAFLTLASAVAAMTMARLIHCALALVLAFAGVATLYLNLGAEFAGLAQLLVYVGAVA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVCASNFMVFSAEGELSR 123
           +  +F I++       A P  +  F GS        +LA  +I   S+ +V +A  +   
Sbjct: 65  ILIVFAILLTRSSEVTAMPAARTAFSGSLIALAVFAVLARAII---SSRLVHAAPAQ--- 118

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            +     V  IG+ L   Y  PLE+   +L  ++IGA+++ LR +   +    S
Sbjct: 119 PIAPMATVRQIGEALMQPYVLPLEVLALLLTAALIGAVLIALREKPSKQGAPTS 172


>gi|257852680|gb|ACV71352.1| NADH dehydrogenase subunit 6 [Rafflesia tuan-mudae]
          Length = 180

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 15/173 (8%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V   +NP++SV   I  F   +GL LLLG +  AMI  VV++GA+ V FLF++MM  I 
Sbjct: 3   MVARAKNPVHSVLFPILVFRETSGLLLLLGLDLSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62

Query: 81  IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL--------VFKGN 129
           I        R    S  IG IL  E+  I+      +   + + + L        V    
Sbjct: 63  IAEIHEEVLRYLPVSGIIGLILWWEMFFILYKETLPLLPTQRKTTSLRYTVYAEKVRSWT 122

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179
           ++E +G +LYT Y     +   +LL++MIGAIVL + HR     +KRQD+ ++
Sbjct: 123 HLETLGNLLYTYYFVWFLVPSILLLVAMIGAIVLTM-HRTTHSAVKRQDLFRR 174


>gi|84508581|ref|YP_448629.1| NADH dehydrogenase subunit 6 [Fucus vesiculosus]
 gi|39653304|gb|AAR29323.1| NADH dehydrogenase subunit 6 [Fucus vesiculosus]
          Length = 263

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 65/249 (26%)

Query: 10  LFSFMAIISSFL---VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           +F F+ I+ + L   V++ +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+
Sbjct: 6   IFIFLTILGASLGVKVISTQNPVYSGLYLVLLFFLGSAISFLLGVEFMALLFLLVYAGAI 65

Query: 67  IVFFLFIIMMLDIDIEVAEP----RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGE- 120
            V  LF++MMLD+   +  P    +K+  ++G SFF+  L   LI  +S  M F      
Sbjct: 66  AVLVLFVVMMLDVK-AIENPWSVNQKRFFYIGISFFVFFLIL-LISNSSLLMAFRVRSTS 123

Query: 121 -LSRL-----VFKGNNVENI---------------------------------------- 134
            +S L     VF  ++ +NI                                        
Sbjct: 124 IISLLASFNVVFHNDDTKNILVGLLDENLTELFRLWFFHDQIINSFDKNTMWFVDFDSPC 183

Query: 135 -----GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
                  +LY+ +A  L I+G +LL++M+GAI L L+       + + KQL     N++ 
Sbjct: 184 GLNDPSYLLYSTHAILLIIAGVVLLIAMVGAISLTLQKN---CPESLYKQLGRESKNAVF 240

Query: 190 MVKVKSGKG 198
            +K K   G
Sbjct: 241 TIKEKPNSG 249


>gi|154148356|ref|YP_001405798.1| NADH dehydrogenase subunit J [Campylobacter hominis ATCC BAA-381]
 gi|153804365|gb|ABS51372.1| NADH-quinone oxidoreductase, j subunit [Campylobacter hominis ATCC
           BAA-381]
          Length = 175

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 99/172 (57%), Gaps = 4/172 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY FS +++    + V  +N +Y++ +L    +  +GLF  LGAEF+ ++ ++VY GAVI
Sbjct: 7   FYFFSVLSLGLFAVSVFSKNVLYAMSALAGGMIFISGLFFTLGAEFLGVVQIMVYTGAVI 66

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V + F +M  + + +V E ++ +     + + +++A L+V      + S +     ++ +
Sbjct: 67  VLYGFSMMFFNANKDVKEAKENKII---YSLAVISAFLLVMIFVAPILSDKISAYPIIKE 123

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDISK 178
            +N+E IG V++T+Y    E+   +LL++MI  IVL+ ++  + +  ++ SK
Sbjct: 124 LDNIEAIGLVIFTKYLIVFELVAIMLLVAMICGIVLVHKNMDKSLTLEEESK 175


>gi|77164628|ref|YP_343153.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
          [Nitrosococcus oceani ATCC 19707]
 gi|254433511|ref|ZP_05047019.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
          [Nitrosococcus oceani AFC27]
 gi|76882942|gb|ABA57623.1| NADH dehydrogenase subunit J [Nitrosococcus oceani ATCC 19707]
 gi|207089844|gb|EDZ67115.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
          [Nitrosococcus oceani AFC27]
          Length = 167

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 61/92 (66%), Gaps = 1/92 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++S+ +V+T  N I+++  LI + +  A +F LLGA F A + +++Y GA++
Sbjct: 5  FYIAAIIAVVSTAMVITRLNAIHALLYLIVSLLAVALIFFLLGAPFAAALEVIIYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
          V F+F++MML++  E A  ++ R    S +IG
Sbjct: 65 VLFVFVMMMLNLG-EEAVAQENRWLTPSMWIG 95


>gi|296133531|ref|YP_003640778.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermincola
           sp. JR]
 gi|296032109|gb|ADG82877.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermincola
           potens JR]
          Length = 164

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 92/172 (53%), Gaps = 10/172 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F++ + + + S+ ++V  RN  +S   +I  F+  A  +L+L A+F+A + ++VY G
Sbjct: 2   TIMFWVIAIITLGSALMMVMNRNIFHSALFMIVTFIGVAATYLMLQADFMAAVQVLVYGG 61

Query: 65  AVIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           A+ +F +F IM+    D++ +    K   L +    I+A  LIV  +  MV      +S 
Sbjct: 62  AIAIFVVFGIMLTQRGDMKQSNLFSKHAPLAA----IVALALIVI-NGVMVLKTNWAVSN 116

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                  V  I +++  +Y  P E++  +LL+++IGA+++     +++K+  
Sbjct: 117 AAPPTETVGPIAELMLQKYVIPFEVAAILLLVALIGAVII----AKEVKKTS 164


>gi|281428806|ref|YP_003354985.1| NADH dehydrogenase subunit 6 [Pneumocystis carinii]
 gi|270486323|gb|ACZ82946.1| NADH dehydrogenase subunit 6 [Pneumocystis carinii]
          Length = 174

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 21/165 (12%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S ++I+ + LVVT +NP+ S+  LI  F++     + L   ++ +  + VYVGA+ + F+
Sbjct: 9   SCLSILLAILVVTSKNPVLSLLYLIGLFIDIGVYLISLQLTYLGLSYITVYVGAIAMLFI 68

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGI-------------LAAELIV--CASNFMVFS 116
           F+IMML  +I+V E +KK  +L S  +G+             L  E+I+   +  F  FS
Sbjct: 69  FVIMML--NIQVVESKKKTNYLRSIPLGLFLGSSLVFTLYLSLPREIIMEKYSHLFSYFS 126

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            E      +   + VE +GKVLYT Y+  L +   IL+L+++GAI
Sbjct: 127 WENR----ILNPSVVEILGKVLYTDYSLWLLLISLILVLAIVGAI 167


>gi|268627920|gb|ACZ13386.1| NADH dehydrogenase subunit 6 [Lepidisis sp. C1a]
          Length = 71

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63 VGAVIVFFLFII 74
          VGA+ + FLF+I
Sbjct: 60 VGAIAILFLFVI 71


>gi|296103961|ref|YP_003614107.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058420|gb|ADF63158.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 184

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 102/185 (55%), Gaps = 20/185 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++    +E  ++R +L    +IG  IL+A ++V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G  +  + +G  L+  Y   +E++  +LL  ++ A          + R++ + ++ S
Sbjct: 118 GIDGTPIGAKEVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169

Query: 183 NPDNS 187
           N  + 
Sbjct: 170 NRTDD 174


>gi|262200412|ref|YP_003271620.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gordonia
           bronchialis DSM 43247]
 gi|262083759|gb|ACY19727.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gordonia
           bronchialis DSM 43247]
          Length = 269

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 25/180 (13%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A++ +  VV     +YS   L    +  A  ++  GA F+ ++ +VVY 
Sbjct: 16  EAVQFWVLGGVAVLGALGVVFATKAVYSAIFLATTMIILAIFYVAQGALFLGVVQVVVYT 75

Query: 64  GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           GAV++ FLF++M++ +D     V   R +R          LAA +I      ++ +  G 
Sbjct: 76  GAVMMLFLFVLMLIGVDSSDSLVETLRGQR----------LAAAVIGLGFGILLIAGIGT 125

Query: 121 LSRLVFKG------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            S   F G             NVE I ++++ QY +  E++G +L+ + +GA+VL  R R
Sbjct: 126 ASVATFAGAPAAGGSSTAGDGNVEAIAELIFVQYLWAFELTGALLITATLGAMVLAHRER 185


>gi|226306205|ref|YP_002766165.1| NADH-quinone oxidoreductase chain J [Rhodococcus erythropolis PR4]
 gi|226185322|dbj|BAH33426.1| NADH-quinone oxidoreductase chain J [Rhodococcus erythropolis PR4]
          Length = 265

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 97/191 (50%), Gaps = 11/191 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+IS+  VV     +YS   L    +  A  +++ GA F+ ++ +VVY 
Sbjct: 22  EAVQFWILGTLAVISALGVVAAPKAVYSALFLAMTMIILAVFYIVQGALFLGVVQIVVYT 81

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF++M++ +D   +     RG   S  + I     ++        S  G    
Sbjct: 82  GAVMMLFLFVLMLVGVDSSDSLVETLRGQRVSAIV-IGVGFGLLLIGGLGNASISGFTGF 140

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----KRQDISKQ 179
                 N++ +  +++ +Y +  E++G +L+ + +GA  +ML HR  I     ++++S+Q
Sbjct: 141 TGLDQGNIDALADLIFIRYVWAFELTGALLITATLGA--MMLAHREKIGATLSQRELSQQ 198

Query: 180 ----LESNPDN 186
               L S+ DN
Sbjct: 199 RFAYLGSDEDN 209


>gi|404356|gb|AAB27397.1| orf100 [Marchantia polymorpha]
          Length = 100

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 7/95 (7%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+F  +A++S  L +  +NP++SV   I  F N  GL +LLG +F AM  LVVYVGA  
Sbjct: 4  FYVFIILALVSGALGIRAKNPVHSVVFFILVFFNTFGLLVLLGLDFFAMFFLVVYVGA-- 61

Query: 68 VFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFF 97
          VF LF++MML I IE       R     GF+G  F
Sbjct: 62 VFILFVVMMLHIRIEEIHENVLRYLPIGGFIGLIF 96


>gi|148262405|ref|YP_001229111.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter
           uraniireducens Rf4]
 gi|146395905|gb|ABQ24538.1| NADH dehydrogenase subunit J [Geobacter uraniireducens Rf4]
          Length = 161

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 91/169 (53%), Gaps = 10/169 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++  FY+ + +A+I++   +T ++ ++++  L+ +F   A +F LLGA  VA+  +++Y
Sbjct: 1   MEATLFYILAAVAVIATGFAITEKHTVHAIVYLVTSFFALAVVFYLLGAPLVAVFEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GA++V F+F+IMMLD+      P K    G    +   +L   ++      +    +  
Sbjct: 61  AGAIMVLFMFVIMMLDL----GHPEKVALPGMRDWWPALLLGGIILAAIIALLTAQQQAV 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           + +L + G  + +  +VL+ +Y   +EI    LL +++GA  L L  RR
Sbjct: 117 IGKLPYVG--IRDFSRVLFRKYGIAVEIISMQLLFALVGA--LYLGRRR 161


>gi|117620263|ref|YP_856310.1| NADH dehydrogenase subunit J [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561670|gb|ABK38618.1| NADH-quinone oxidoreductase chain j [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 182

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 13/183 (7%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L FY  + +AI S+  V++  NP++++ +LI + +  A +F  LGA F   + ++VY GA
Sbjct: 3   LAFYAAALVAIYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGASFAGALQVIVYAGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSRL 124
           ++V F+F++MML++    A+ ++K     + ++   L + +++    + +    G    L
Sbjct: 63  IMVLFVFVVMMLNLG--SAQDQEKNWLTPTTWVGPGLLSLILLGFLAYGILGVTG--GEL 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
                + + +G  L+  Y   +E++  +LL  ++ A          + R+D S ++ S P
Sbjct: 119 GLTDVSAKAVGIALFGPYVLAVELASILLLAGLVTA--------YHLGREDKSGEVLSVP 170

Query: 185 DNS 187
             S
Sbjct: 171 KAS 173


>gi|282891841|ref|ZP_06300321.1| hypothetical protein pah_c198o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498274|gb|EFB40613.1| hypothetical protein pah_c198o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 168

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 21/163 (12%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++F  + I+SS  V++ R PIY+  S +   +  AGL+  L A+F+A++ ++VY GA++V
Sbjct: 10  WVFGTILILSSLGVISSRKPIYASLSFLMTLLALAGLYQQLSAQFIAVMQVLVYAGAILV 69

Query: 69  FFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-F 126
            F+F+I++  D   ++A  + K            +  L+  A    +F+      R    
Sbjct: 70  IFMFVIVLFQDAHEKIALFKAKS-----------SPPLLFAAGGLFLFTMLFLSERFYNL 118

Query: 127 KGNN--------VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           K +N        VE +GK LY  + +P E    + L+++IGA+
Sbjct: 119 KTSNGPSEEFGTVETLGKALYADFFFPFEAVTLLFLIAVIGAV 161


>gi|268627908|gb|ACZ13375.1| NADH dehydrogenase subunit 6 [Isidella sp. I1a]
          Length = 70

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MNSLFM-IFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63 VGAVIVFFLFI 73
          VGA+ + FLF+
Sbjct: 60 VGALAILFLFV 70


>gi|24372599|ref|NP_716641.1| NADH dehydrogenase subunit J [Shewanella oneidensis MR-1]
 gi|24346624|gb|AAN54086.1|AE015546_3 NADH dehydrogenase I, J subunit [Shewanella oneidensis MR-1]
          Length = 183

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 54/83 (65%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          L FY  + +A+ S+  V++  NP++++ +LI + +  A +F  LGA F   + ++VY GA
Sbjct: 3  LAFYASALVAVYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGAAFAGALQVIVYAGA 62

Query: 66 VIVFFLFIIMMLDIDIEVAEPRK 88
          ++V F+F++MML++  + A+ + 
Sbjct: 63 IMVLFVFVVMMLNLGSDQAQEKN 85


>gi|187764076|ref|YP_001876525.1| NADH dehydrogenase subunit 6 [Dictyostelium fasciculatum]
 gi|160688784|gb|ABX45199.1| NADH dehydrogenase subunit 6 [Dictyostelium fasciculatum]
          Length = 241

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 42/189 (22%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++  + +V   NPIYSV +LI  FV  + + +LL  EF+A I ++V VGAV V FLFII
Sbjct: 15  ALVCLYNIVKNINPIYSVLNLIVMFVCYSSMLILLDQEFLACIFILVNVGAVAVLFLFII 74

Query: 75  MMLDID-IEVAEPRKKR----GFLG------SFFIGILAAELIVCASN---------FMV 114
           MM++I  +E+ E  KK      F+G       F IG  +  ++    N         F  
Sbjct: 75  MMINITMVEIKENMKKYLPYITFMGLNIFMFLFIIG--SRYMLTVPENMTEHVYEQFFTQ 132

Query: 115 FSAEGELS-------------------RLVFKGNNVENIG-KVLYTQYAYPLEISGFILL 154
            + + ELS                    L  K  +++NIG  +LY+  +    ++  +LL
Sbjct: 133 LAKDNELSLGNVMKESYLININYVNIYELFIKTTDIKNIGANILYSSNSLWFVLACLMLL 192

Query: 155 LSMIGAIVL 163
           ++M+G I L
Sbjct: 193 IAMVGVINL 201


>gi|268627914|gb|ACZ13380.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1b]
 gi|268627915|gb|ACZ13381.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1a]
 gi|268627917|gb|ACZ13383.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D1a]
          Length = 71

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVY 59

Query: 63 VGAVIVFFLFII 74
          VGA+ + FLF+I
Sbjct: 60 VGAIAILFLFVI 71


>gi|226944926|ref|YP_002799999.1| NADH dehydrogenase subunit J [Azotobacter vinelandii DJ]
 gi|226719853|gb|ACO79024.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain J
          [Azotobacter vinelandii DJ]
          Length = 166

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 53/82 (64%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL +  A+ S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++VY GA++
Sbjct: 5  FYLSAGFAVASTLRVITHTNPVHALLYLIVSLLAVAMCFFSLGAPFAGVLEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++   VAE  ++
Sbjct: 65 VLFVFVVMMLNLGPAVAEQERQ 86


>gi|301058577|ref|ZP_07199582.1| putative NADH-quinone oxidoreductase subunit J [delta
           proteobacterium NaphS2]
 gi|300447309|gb|EFK11069.1| putative NADH-quinone oxidoreductase subunit J [delta
           proteobacterium NaphS2]
          Length = 166

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY+   +A++++FL +T R  I+ +  L+ + + AA  FL+LGA F A + ++ Y G
Sbjct: 2   NLAFYVSGVIAVLATFLAITRREAIHGLVYLVVSLLAAAVAFLVLGAPFAAALEVITYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V  LF +M L       +  K+      +F        ++   +F+     G+ S +
Sbjct: 62  AMMVMLLFAVMTLSPKARKEDDAKRP---HPWFWLGPLLLSVLLTGDFIYVLFAGKGSPV 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
                +   +G+VL+  Y   +E++  +LL  ++GA
Sbjct: 119 SGSAVSPRQVGQVLFGPYVLGVELASMLLLAGLVGA 154


>gi|326382754|ref|ZP_08204444.1| NADH:ubiquinone oxidoreductase subunit J [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198344|gb|EGD55528.1| NADH:ubiquinone oxidoreductase subunit J [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 282

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 18/198 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   + +I +  VV     +YS   L    +  A  +++ GA F+ ++ +VVY 
Sbjct: 17  EAVTFWVLGAVVVIGALGVVLSPKAVYSAVFLAMTMIILAVFYVMQGALFLGVVQVVVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIE---VAEPRKKR---GFLGSFF-------IGILAAELIVCAS 110
           GAV++ FLF++M++ +D     V   R +R     LG  F       IG     + V A 
Sbjct: 77  GAVMMLFLFVLMLIGVDSSESLVESIRGQRLAAAGLGLGFAVLLIAAIGSATLAVFVGAP 136

Query: 111 NFMVFSAEGELS-RLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           +F   +A G  S  L   GN N+  + ++++ +Y +  E++G +L+ + +GA+VL  R R
Sbjct: 137 DFSHGTAPGGPSTELRTGGNQNIRALAELIFGRYLWAFELTGALLITATLGAMVLAHRQR 196

Query: 169 ---RDIKRQDISKQLESN 183
              R+ +R+   ++  S 
Sbjct: 197 FGPRNGQREQSVERFSSG 214


>gi|51893909|ref|YP_076600.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM
           14863]
 gi|51857598|dbj|BAD41756.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM
           14863]
          Length = 176

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + + ++S++ +VT     ++   +  +F   AG+FLL+ AEF+A I ++VY GA+ 
Sbjct: 14  FIILAVVTLVSTYRMVTTPLITHAALFMALSFTAVAGIFLLMQAEFIAAIQVLVYAGAIT 73

Query: 68  VFFLFIIM---MLDIDIEVAEPRK-KRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELS 122
              +F IM   + DI  +  E  K  R       +G + AA ++   S   + +  GE  
Sbjct: 74  TMVIFAIMLSGLRDIKRQQQERVKLWRSNPAVLVVGAVFAAFMLYLYSTANLPAGGGE-- 131

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           R V     V  IG  L+T Y  P E++  +LL++MIGAI+L  +    
Sbjct: 132 RQVVP---VSAIGSQLFTTYVIPFEVASILLLVAMIGAIILTAKEAES 176


>gi|259907935|ref|YP_002648291.1| NADH dehydrogenase subunit J [Erwinia pyrifoliae Ep1/96]
 gi|224963557|emb|CAX55047.1| NADH dehydrogenase I chain J [Erwinia pyrifoliae Ep1/96]
 gi|283477816|emb|CAY73732.1| NADH dehydrogenase I chain J [Erwinia pyrifoliae DSM 12163]
          Length = 184

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL   +A++++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    AE ++++ +L
Sbjct: 65 VLFVFVVMMLNLG--GAEVQQEKDWL 88


>gi|295098081|emb|CBK87171.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae
          NCTC 9394]
          Length = 184

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88
          V F+F++MML++   E+ + R+
Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86


>gi|116009011|gb|ABJ52175.1| NADH dehydrogenase subunit 6 [Phyllostachys edulis]
          Length = 173

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 14/152 (9%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + NPIYS FSL    +  +  ++LL + FVA+  L++YVGA+ V  +F +M +D   
Sbjct: 23  VVLLTNPIYSAFSLGLVLICISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFID--- 79

Query: 82  EVAEPRKKRGF--LGSFFIGILAAELIVC-ASNFMVFSAEGEL-----SRLVFKG--NNV 131
             +E  K + +  +G  F  ++   ++    +  +  S  G L     +++V +G  NNV
Sbjct: 80  -GSEWSKNKNYWTIGDGFTSLVCITILFSLMTTILDTSWYGILWTTRSNQIVEQGLINNV 138

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           + IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 139 QQIGIHLATDFYLPFELISIILLVSLIGAITM 170


>gi|292488835|ref|YP_003531722.1| NADH dehydrogenase I subunit J [Erwinia amylovora CFBP1430]
 gi|292899986|ref|YP_003539355.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC 49946]
 gi|291199834|emb|CBJ46958.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC 49946]
 gi|291554269|emb|CBA21583.1| NADH dehydrogenase I chain J [Erwinia amylovora CFBP1430]
          Length = 184

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL   +A++++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    AE ++++ +L
Sbjct: 65 VLFVFVVMMLNLG--GAEVQQEKDWL 88


>gi|310768157|gb|ADP13107.1| NADH dehydrogenase subunit J [Erwinia sp. Ejp617]
          Length = 184

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL   +A++++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    AE ++++ +L
Sbjct: 65 VLFVFVVMMLNLG--GAEVQQEKDWL 88


>gi|187736097|ref|YP_001878209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Akkermansia
          muciniphila ATCC BAA-835]
 gi|187426149|gb|ACD05428.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Akkermansia
          muciniphila ATCC BAA-835]
          Length = 236

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 52/82 (63%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            + FY+F  +A++ S +VV +RNP+ S   +  +F   A + + LGA F+ ++ ++VY 
Sbjct: 6  SDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYA 65

Query: 64 GAVIVFFLFIIMMLDIDIEVAE 85
          GA++V F FIIM+L++  E + 
Sbjct: 66 GAIMVLFAFIIMLLNVKQETSP 87


>gi|86608754|ref|YP_477516.1| NADH dehydrogenase subunit J [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557296|gb|ABD02253.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 202

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 20/204 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + S MAI  +  VV   + +YS F L   F++ AGL+LLL A+FVA   +++Y
Sbjct: 7   VQLVTFVVLSAMAIGFALGVVWAPSIVYSGFLLGGVFLSMAGLYLLLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++     A P K    LG    G+ A   +VC   F + +A    +
Sbjct: 67  VGAVNVLILFAIMLVNRRYNFA-PLK----LGWLRNGVTA---VVCLGLFALLAAMALNT 118

Query: 123 RLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDI 176
               +     ++V  IG   ++ Y  P E++  +LL+++IGAIVL  R          D+
Sbjct: 119 PWPLQPIQPLSSVLVIGGHFFSDYLLPFELASVLLLMALIGAIVLARREFVLPQAGEGDL 178

Query: 177 S------KQLESNPDNSIVMVKVK 194
           S       QLES  +    +V  +
Sbjct: 179 SLLERARPQLESESERPAELVSTR 202


>gi|312172995|emb|CBX81250.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC BAA-2158]
          Length = 184

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL   +A++++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    AE ++++ +L
Sbjct: 65 VLFVFVVMMLNLG--GAEVQQEKDWL 88


>gi|313498023|gb|ADR59389.1| NADH dehydrogenase subunit J [Pseudomonas putida BIRD-1]
          Length = 166

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y GA++
Sbjct: 5   FYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           V F+F++MML++    A   ++RG+L     GI A  +I
Sbjct: 65  VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98


>gi|170721049|ref|YP_001748737.1| NADH dehydrogenase subunit J [Pseudomonas putida W619]
 gi|169759052|gb|ACA72368.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudomonas
           putida W619]
          Length = 166

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y GA++
Sbjct: 5   FYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           V F+F++MML++    A   ++RG+L     GI A  +I
Sbjct: 65  VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98


>gi|188533355|ref|YP_001907152.1| NADH dehydrogenase subunit J [Erwinia tasmaniensis Et1/99]
 gi|188028397|emb|CAO96258.1| NADH dehydrogenase I chain J [Erwinia tasmaniensis Et1/99]
          Length = 183

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL   +A++++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    AE ++++ +L
Sbjct: 65 VLFVFVVMMLNLG--GAEVQQEKDWL 88


>gi|261340668|ref|ZP_05968526.1| NADH dehydrogenase I, J subunit [Enterobacter cancerogenus ATCC
          35316]
 gi|288317082|gb|EFC56020.1| NADH dehydrogenase I, J subunit [Enterobacter cancerogenus ATCC
          35316]
          Length = 184

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88
          V F+F++MML++   E+ + R+
Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86


>gi|296169181|ref|ZP_06850835.1| NADH-quinone oxidoreductase subunit J [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896160|gb|EFG75826.1| NADH-quinone oxidoreductase subunit J [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 278

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 96/187 (51%), Gaps = 16/187 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A++ +  VV   N +YS   L    +  A  +++  A F+ ++ +VVY 
Sbjct: 33  EAVAFWVLGALALVGAIGVVLSVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVVYT 92

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF++M++ +D   AE  K+     +     +AA L       ++ +A G  + 
Sbjct: 93  GAVMMLFLFVLMLIGVD--SAESLKE-----TLHGQRIAAVLAGVGFGVLLIAAIGSGAT 145

Query: 124 LVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             F G        NVE +  +++++Y +  E++  +L+ + IGA+VL   HR   +R+  
Sbjct: 146 GGFAGLTAANANGNVEGLAALIFSRYVWAFELTSALLITAAIGAMVLA--HRERFERRKT 203

Query: 177 SKQLESN 183
            ++L   
Sbjct: 204 QRELSQE 210


>gi|26990821|ref|NP_746246.1| NADH dehydrogenase subunit J [Pseudomonas putida KT2440]
 gi|148546976|ref|YP_001267078.1| NADH dehydrogenase subunit J [Pseudomonas putida F1]
 gi|24985828|gb|AAN69710.1|AE016607_4 NADH dehydrogenase I, J subunit [Pseudomonas putida KT2440]
 gi|148511034|gb|ABQ77894.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Pseudomonas
           putida F1]
          Length = 166

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y GA++
Sbjct: 5   FYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           V F+F++MML++    A   ++RG+L     GI A  +I
Sbjct: 65  VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98


>gi|256371189|ref|YP_003109013.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007773|gb|ACU53340.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 192

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 10/168 (5%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-I 81
           V+ R P+++   L+      A LF+  GA+F+A + +VVY GAV+V FLF+IM+L +D +
Sbjct: 29  VSARQPVHAALFLVLTLFGVAILFIQEGAQFLAAVQVVVYAGAVVVLFLFVIMLLGVDRV 88

Query: 82  EVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAE---GELSRLVFKGNNVENIGK 136
           EV+        + +  IG+ A   EL + A    V  A    G+LS     G+N+  + +
Sbjct: 89  EVSSIVGSGWRVWAAGIGVAAVLVELGLLAIGHEVTGASSLAGKLS----AGSNLGVLAR 144

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
            ++T Y  P E++  +L++++IGA+VL  R R+      +S+  E +P
Sbjct: 145 SVFTTYVLPFELTSVLLVIAVIGAVVLARRLRQRSDATTVSRSEEVHP 192


>gi|237809388|ref|YP_002893828.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tolumonas
           auensis DSM 9187]
 gi|237501649|gb|ACQ94242.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tolumonas
           auensis DSM 9187]
          Length = 175

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 8/140 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FY  S +AI+++  V+T  NP++++  LI + +    +F  LGA FV  + ++VY G
Sbjct: 2   ELAFYGSSVVAILATLGVITGTNPMHALLYLIVSLIAVGMIFFSLGASFVGAMQVIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++    A+ ++++      +IG     LI+ A    VF A       
Sbjct: 62  AIMVLFVFVVMMLNLG--TAQEQERQWLRPITWIG----PLILSAGQMAVFYAALHGVPG 115

Query: 125 VFKGNNV--ENIGKVLYTQY 142
           +  G  +  + +G  LY  Y
Sbjct: 116 IITGEPITAKQVGIALYGPY 135


>gi|149280561|ref|ZP_01886677.1| NADH dehydrogenase I chain J [Pedobacter sp. BAL39]
 gi|149228676|gb|EDM34079.1| NADH dehydrogenase I chain J [Pedobacter sp. BAL39]
          Length = 165

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 20/175 (11%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FY  + + +I S +VV  +NP++SV  LI  F      ++LL A+F+A++  +VY
Sbjct: 1   MGTSVFYFVATLTVIFSLMVVFAKNPVHSVLYLIVTFFTLTVHYILLNAQFLAVVNFIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121
           +GA++V FLF++M+L+++ +  EP K            L   + V A   +V +  G L 
Sbjct: 61  MGAIMVLFLFVLMLLNLNKD-NEPLKST----------LVKVVGVVAGCCLVVTIVGSLK 109

Query: 122 -----SRLVFKGNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                  +V +  N   V+N+GK L+  Y  P E+S  +LL +M+GA++L  + +
Sbjct: 110 ATAISDPVVLRNPNLGLVKNLGKELFGPYMLPFELSSILLLTAMVGAVLLTKKEK 164


>gi|322831992|ref|YP_004212019.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rahnella sp.
           Y9602]
 gi|321167193|gb|ADW72892.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rahnella sp.
           Y9602]
          Length = 186

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 95/166 (57%), Gaps = 13/166 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ + +A++++  V+T  NP++++  LI + +  A +F  LGA F   + ++VY GA++
Sbjct: 5   FYIAALVAVLATLRVITHTNPVHALLYLIVSLLAIAAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++   V E  ++R +L  + +IG  +L+  L+V     M+ S  G L   
Sbjct: 65  VLFVFVVMMLNLG-NVQE--QERAWLKPATWIGPSVLSVILLVV----MIMSILG-LHDH 116

Query: 125 VFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             KG+ V+   +G  L+  Y   +E++  +LL  ++ A  +   H+
Sbjct: 117 GIKGDMVDAKAVGIALFGPYVLAVELASMLLLAGLVVAFHIGREHK 162


>gi|119513555|ref|ZP_01632572.1| NADH dehydrogenase subunit J [Nodularia spumigena CCY9414]
 gi|119461788|gb|EAW42808.1| NADH dehydrogenase subunit J [Nodularia spumigena CCY9414]
          Length = 221

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 21/179 (11%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           M I ++  VV   N +YS F L   F++ A ++LLL  +FVA   ++VYVGAV V  LF 
Sbjct: 35  MMIGAALGVVLFSNVVYSAFMLGGVFISMAAIYLLLNGDFVAAAQVLVYVGAVNVLILFA 94

Query: 74  IMMLDIDIEVAEPRKKRGF---------LGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           IM+++   + A P    G          LG F  G+L+  ++     +   +A    S +
Sbjct: 95  IMLVNKREDFA-PFPSTGLRKVLTAVVSLGLF--GLLSVMVLGTPWAYSTPAAVAPESSI 151

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           V        IG+  +T +  P E++  +LL++M+GAI+  L  R  +  Q  S +L+ +
Sbjct: 152 VV-------IGEHFFTDFLLPFELASVLLLIAMVGAII--LARREYLPEQPTSSELQQS 201


>gi|73748697|ref|YP_307936.1| proton-translocating NADH-quinone oxidoreductase, J subunit
           [Dehalococcoides sp. CBDB1]
 gi|147669456|ref|YP_001214274.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Dehalococcoides sp. BAV1]
 gi|289432723|ref|YP_003462596.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Dehalococcoides sp. GT]
 gi|73660413|emb|CAI83020.1| proton-translocating NADH-quinone oxidoreductase, J subunit
           [Dehalococcoides sp. CBDB1]
 gi|146270404|gb|ABQ17396.1| NADH dehydrogenase subunit J [Dehalococcoides sp. BAV1]
 gi|288946443|gb|ADC74140.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Dehalococcoides sp. GT]
          Length = 160

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 8/159 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ +   I+S+ LVV V+N  +S   LI  F++ AG+FLLL A+F+A + +++Y+GA+ 
Sbjct: 5   FWIIAITCIVSALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIGAIS 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V  +  I ML  +++      K      F +  L   +      +M+ S+    S     
Sbjct: 65  VLIILAI-MLTREVQRGNLTNKLKIPALFVVTALGGIM-----TYMLISSNWTSSDAPPP 118

Query: 128 GNNVENIGKVLYTQYAYPLEI--SGFILLLSMIGAIVLM 164
                 +  +L+    + L +  +G ILL+++IGAIVL+
Sbjct: 119 STTTAGLADMLFGADGFGLGVLLTGVILLVAIIGAIVLV 157


>gi|223931106|ref|YP_002586968.1| NADH-plastoquinone oxidoreductase subunit 6 [Syntrichia ruralis]
 gi|219562320|gb|ACL27651.1| NADH-plastoquinone oxidoreductase subunit 6 [Syntrichia ruralis]
          Length = 193

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 22/180 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + F+L     I+ S  VV + N +YS F L   F   + L+  L A+FVA   +++Y
Sbjct: 8   LHEIIFFLLEVGIILGSLGVVLLTNIVYSAFFLGLVFFCISILYFALNADFVAAAQILIY 67

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117
           VGAV V  +F +M+++      +P+ K+ F  SF+        +VC S F     ++ + 
Sbjct: 68  VGAVNVLIVFAVMLIN------KPQSKKLF--SFWTIGDKITFLVCLSLFFLLVTIILNT 119

Query: 118 EGELSRLVFKG---------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                 L+ +           NV+ IG +L TQ+  P E+   +LL+++IGAIV+  R  
Sbjct: 120 SWSSITLITESKKFLNFDFTQNVQRIGYLLLTQFLLPFELLSIVLLVALIGAIVIARREN 179


>gi|284992916|ref|YP_003411470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Geodermatophilus obscurus DSM 43160]
 gi|284066161|gb|ADB77099.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Geodermatophilus obscurus DSM 43160]
          Length = 273

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 96/184 (52%), Gaps = 12/184 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+  +  +V  RN ++S   LI   +     +++  A F+  + ++VY 
Sbjct: 10  EAVVFWVLGPIALAGALGMVMSRNAVHSALWLINTMLALGVFYVVQEAPFLGAVQIIVYT 69

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILAAELIVCASNFMVFSA 117
           GA+++ FLF++M++  D   +     RG       LG+ F  ++ A  +  A+  +  + 
Sbjct: 70  GAIMILFLFVLMLVGRDSSDSVVETLRGQRVAALLLGAGFAAVVGAG-VARATQDLPVAG 128

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDI 176
            G +     + +N+E I  +LY++Y    E++G +L+ + +GA+VL   H  R+ + +  
Sbjct: 129 LGAVQG--AETSNIEAIAGLLYSRYLLAFEVTGALLITAAVGALVLT--HVEREAEERRT 184

Query: 177 SKQL 180
            K+L
Sbjct: 185 QKEL 188


>gi|325277469|ref|ZP_08143075.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas sp. TJI-51]
 gi|324097398|gb|EGB95638.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas sp. TJI-51]
          Length = 166

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y GA++
Sbjct: 5   FYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           V F+F++MML++    A   ++RG+L     GI A  +I
Sbjct: 65  VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98


>gi|167034695|ref|YP_001669926.1| NADH dehydrogenase subunit J [Pseudomonas putida GB-1]
 gi|166861183|gb|ABY99590.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudomonas
           putida GB-1]
          Length = 166

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y GA++
Sbjct: 5   FYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           V F+F++MML++    A   ++RG+L     GI A  +I
Sbjct: 65  VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98


>gi|322417690|ref|YP_004196913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M18]
 gi|320124077|gb|ADW11637.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M18]
          Length = 161

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 88/166 (53%), Gaps = 6/166 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++  FY+ + + +I +   +T R  + ++  L+ +F   A +F LLGA  +A   +++Y
Sbjct: 1   MEATLFYILAAVTLIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPLIAAFEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IMML++      P+ +   L  ++  +L    +V   + +V  A+G+ +
Sbjct: 61  AGAIMVLFLFVIMMLELGSPEKLPKPR---LSDWWPALLLVGAVV--GSVVVLVADGQPA 115

Query: 123 RLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            L  F   +     + L+ QY   +E+    LL +++GA+ L  R 
Sbjct: 116 GLPGFVEISARQFAQTLFQQYGVAVEVISMQLLFALVGALYLGRRR 161


>gi|58219954|gb|AAW67495.1| NADH dehydrogenase subunit 6 [Fusarium oxysporum]
 gi|60499215|gb|AAX21838.1| NADH dehydrogenase subunit 6 [Fusarium oxysporum]
          Length = 223

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 43/196 (21%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++   L++  +NPI SV  LI  F N +   +L+G  F+ +  L+VY+GAV + FLFI+
Sbjct: 28  ALLCGILIIINKNPIVSVIFLIGLFANISVYLILIGLTFIGLSYLIVYIGAVSILFLFIL 87

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAA------------------------------- 103
           M+++I     +   +        I ILA                                
Sbjct: 88  MLINIRTSELQSNNRNSVSLGLLITILANFTIFQVLPYYMAILNNYSSKLNTILYYLPWN 147

Query: 104 -----------ELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152
                       L +  +N M  S+    + +   G +   IG +LYT +   + ++ FI
Sbjct: 148 KFSDILKYINRNLDITNANIMFVSSNSWDNNMAETG-HTATIGHILYTSHNMWIFMASFI 206

Query: 153 LLLSMIGAIVLMLRHR 168
           LLL+M+GAI++ ++ +
Sbjct: 207 LLLAMVGAIIITIKGK 222


>gi|326799614|ref|YP_004317433.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sphingobacterium sp. 21]
 gi|326550378|gb|ADZ78763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sphingobacterium sp. 21]
          Length = 183

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 18/179 (10%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L FY+ +F A+ S+ L+V+++N + S+F         AGL++   A+FVA+  ++VYVG 
Sbjct: 6   LLFYVLAFTAVGSAILIVSMKNLVRSLFLFFVTLFAVAGLYVFALADFVAVTQVIVYVGG 65

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV-------------CASNF 112
           V+V  LF  M+ +   +V     + GF G F I    A ++               A+N 
Sbjct: 66  VLVLMLFAFMLSN---KVLLNDLQSGFKGVFSIPSWQAGMVSLALFTVLLTVVWQVATNQ 122

Query: 113 MVFSAEGELSRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             +  + +  +L+ +   N + ++G  L T++  P E+    L+++++GA  L  + +R
Sbjct: 123 PQWITDAKEKQLLIQHHDNTIHHLGINLMTRFILPFEVVSIFLMMALMGAAHLARKEKR 181


>gi|317492615|ref|ZP_07951042.1| NADH-ubiquinone/plastoquinone oxidoreductase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919365|gb|EFV40697.1| NADH-ubiquinone/plastoquinone oxidoreductase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 192

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 102/193 (52%), Gaps = 14/193 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ + +A++++  V++  NP++++  LI + +  A +F  LGA F   + ++VY GA++
Sbjct: 5   FYIAALVAVVATIRVISHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG---ILAAELIVCASNFMVFSAEGELSR 123
           V F+F++MML++   V E  ++R +L  S +IG   +    L V     M  + +G    
Sbjct: 65  VLFVFVVMMLNLGNSVVE--QERAWLKPSLWIGPSLLSLILLAVLVYAIMSVNDQGISGD 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           ++    + + +G  L+  Y   +E+   +LL  ++ A  +   H++    +  SK  E+ 
Sbjct: 123 MI----DAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHKQG---EVFSKTPETE 175

Query: 184 PDNSIVM-VKVKS 195
            + +  M VK K+
Sbjct: 176 ANKAKAMAVKNKA 188


>gi|49147020|ref|YP_025876.1| NADH dehydrogenase subunit 6 [Moniliophthora perniciosa]
 gi|34538665|gb|AAQ74273.1| NADH dehydrogenase subunit 6 [Moniliophthora perniciosa]
          Length = 207

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 52/80 (65%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M +L   + +F  ++SS   +T +NP+ SV  LI  FV +AG  +L+G  F+ +  ++VY
Sbjct: 1  MTTLLINILAFATLLSSIFSITSKNPVISVLFLIGTFVLSAGYLILIGINFIGISYIIVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIE 82
          VGA+ V FLF+IMM++I + 
Sbjct: 61 VGAIAVLFLFVIMMINIKLT 80


>gi|197285612|ref|YP_002151484.1| NADH dehydrogenase subunit J [Proteus mirabilis HI4320]
 gi|227356115|ref|ZP_03840505.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis ATCC 29906]
 gi|194683099|emb|CAR43656.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis HI4320]
 gi|227163760|gb|EEI48672.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis ATCC 29906]
          Length = 177

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 10/171 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   ++I+++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5   FYIAGLISILATLRVITHTNPVHALLYLIVSLIGLSVVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLV 125
           V F+F++MML++   V E ++++     F+IG     L++        S+   GE+S  +
Sbjct: 65  VLFVFVVMMLNLGKSVVE-QERKWLQPRFWIGPAILSLVLLIVLVYAISSVTHGEISGEI 123

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                 + +G  L+  Y   +E++  +LL  +I A  +     RD    D+
Sbjct: 124 I---GAKEVGISLFGPYILAVELASVLLLSGLIVAYHI----GRDQSHDDL 167


>gi|124112063|ref|YP_001019164.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chlorokybus
           atmophyticus]
 gi|221272346|sp|Q19V56|NU6C_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|124012179|gb|ABD62195.2| subunit 6 of NADH-plastoquinone oxidoreductase [Chlorokybus
           atmophyticus]
          Length = 214

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 21/200 (10%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           SLFF       ++ +  VV + N +YS F L    ++ AG++LLL A+FVA   +++YVG
Sbjct: 11  SLFF--LEGAVLVGALGVVLLPNILYSAFLLGGVLMSIAGIYLLLNADFVAAAQVLIYVG 68

Query: 65  AVIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGI----LAAELI------------V 107
           A+ V  LF IM+++  D  VA        + +  IG+    LA  LI            V
Sbjct: 69  AINVLILFAIMLVNKNDGRVAAGTSNSSGVTNNIIGLTCIGLAGFLIDMIVTTPWLPKGV 128

Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +  +   A+   ++   KG ++  IG  +++ +  P E+   +LL++++GAIV+  R 
Sbjct: 129 AVATSLSAKADSTAAQTQLKG-SISIIGLHIFSDFLLPFEVISLLLLVTLVGAIVIARRE 187

Query: 168 R-RDIKRQDISKQLESNPDN 186
           R  D++   IS     +P N
Sbjct: 188 RLSDLEISKISLLNLPDPSN 207


>gi|170767399|ref|ZP_02901852.1| NADH-quinone oxidoreductase, J subunit [Escherichia albertii
           TW07627]
 gi|170123733|gb|EDS92664.1| NADH-quinone oxidoreductase, J subunit [Escherichia albertii
           TW07627]
          Length = 184

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 104/186 (55%), Gaps = 21/186 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++    +E  ++R +L    +IG  IL+A ++V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G  V  + +G  L+  Y   +E++  +LL  ++ A          + R++ + ++ S
Sbjct: 118 GIDGTPVSAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREEHAGEVLS 169

Query: 183 N-PDNS 187
           N  D+S
Sbjct: 170 NRKDDS 175


>gi|159899733|ref|YP_001545980.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892772|gb|ABX05852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 174

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++  F   + +A+ ++  +V   N ++S   LI  F + A L+ LL A F+  + + VY
Sbjct: 1   METFLFITTAIVAVGAALAMVLSSNAVHSALFLILNFCSVAILYFLLRAPFLGAVQVTVY 60

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE 120
            GA++V FLF+IM+L  +  E+ E +          +G+ L AE+      ++ +     
Sbjct: 61  AGAIMVLFLFVIMLLGAENAELGEEKIGWQKPAGLVLGVALLAEI-----GYVAYRGTTL 115

Query: 121 LSRLVFKGNNV---ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   V    N+     I   L++ Y  P E+   +LL++++G +V  L  RR + R++
Sbjct: 116 IDAPVADATNIGAPTTISAKLFSTYLLPFEVISILLLIAVVGTVV--LTRRRVVAREE 171


>gi|75908928|ref|YP_323224.1| NADH dehydrogenase subunit J [Anabaena variabilis ATCC 29413]
 gi|75702653|gb|ABA22329.1| NADH dehydrogenase subunit J [Anabaena variabilis ATCC 29413]
          Length = 202

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 5/195 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M I ++  VV   + +YS F L   F++ AG++LLL  +FVA   ++VY
Sbjct: 7   VQVVSFGILATMLIGTALGVVLASSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +   P    G +      I++  L    S  MV +     S
Sbjct: 67  VGAVNVLILFAIMLVNKRQDFI-PYPSAG-IRKILTAIVSVGLFALLST-MVLATPWAYS 123

Query: 123 RLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQL 180
                G+ ++  IG+  ++ +  P E++  +LL++M+GAI+L  R +  ++   D+ + +
Sbjct: 124 TTPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARREYLPEVTPSDLPQTV 183

Query: 181 ESNPDNSIVMVKVKS 195
            + P+    +V   S
Sbjct: 184 LTLPERPRELVGAGS 198


>gi|253729607|ref|YP_003029792.1| NdhG [Bambusa oldhamii]
 gi|255961434|ref|YP_003097629.1| NADH-plastoquinone oxidoreductase subunit 6 [Dendrocalamus
           latiflorus]
 gi|246367117|gb|ACS94728.1| NdhG [Bambusa oldhamii]
 gi|255040311|gb|ACT99971.1| NADH-plastoquinone oxidoreductase subunit 6 [Dendrocalamus
           latiflorus]
          Length = 176

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 14/152 (9%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + NPIYS FSL    +  +  ++LL + FVA+  L++YVGA+ V  +F +M +D   
Sbjct: 26  VVLLTNPIYSAFSLGLVLICISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFID--- 82

Query: 82  EVAEPRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNV 131
             +E  K + +  +G  F  ++   ++      +  +++         +++V +G  NNV
Sbjct: 83  -GSEWSKNKNYWTIGDGFTSLVCITILFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNV 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           + IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 142 QQIGIHLATDFYLPFELISIILLVSLIGAITM 173


>gi|238759970|ref|ZP_04621123.1| NADH-quinone oxidoreductase subunit J [Yersinia aldovae ATCC 35236]
 gi|238701797|gb|EEP94361.1| NADH-quinone oxidoreductase subunit J [Yersinia aldovae ATCC 35236]
          Length = 181

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 93/169 (55%), Gaps = 19/169 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5   FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG------ILAAELIVCASNFMVFSAEG 119
           V F+F++MML++ ++E    +++R +L  S +IG      +L + LI   S+       G
Sbjct: 65  VLFVFVVMMLNLGNVE----QQERDWLKPSLWIGPGILALVLLSVLIYAISSVSDQGISG 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           E+        + + +G  L+  Y   +E++  +LL  ++ A  +   H+
Sbjct: 121 EMV-------DAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHK 162


>gi|283850898|ref|ZP_06368184.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           sp. FW1012B]
 gi|283573821|gb|EFC21795.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           sp. FW1012B]
          Length = 172

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 9/150 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M      FYL + + + ++ L  T RNP+++V   +  F+ AAG+F++LGA    ++ +V
Sbjct: 1   MTALGALFYLLAAVLLGAAVLTATRRNPMHAVCCAVITFLAAAGMFVVLGAPLPGVLEVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V FLFIIM+L +       R  R        G+LAA  +V  + F +  A+  
Sbjct: 61  VYAGAIMVLFLFIIMLLGLSAGTGPVRAGR----LVVPGVLAAASLV--ALFALIGAD-P 113

Query: 121 LSRLVFKG--NNVENIGKVLYTQYAYPLEI 148
             R +      +   +G VL+  Y   +E+
Sbjct: 114 AGRTMLPAAIASPAAVGTVLFDAYWLAVEV 143


>gi|294637171|ref|ZP_06715479.1| NADH-quinone oxidoreductase, J subunit [Edwardsiella tarda ATCC
          23685]
 gi|291089635|gb|EFE22196.1| NADH-quinone oxidoreductase, J subunit [Edwardsiella tarda ATCC
          23685]
          Length = 190

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 57/86 (66%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++++  V+T  NP++++  LI + +  A +F  LGA F   + ++VY GA++
Sbjct: 5  FYVAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++   V E  ++R +L
Sbjct: 65 VLFVFVVMMLNLGNSVVE--QERAWL 88


>gi|240169661|ref|ZP_04748320.1| NADH dehydrogenase subunit J [Mycobacterium kansasii ATCC 12478]
          Length = 264

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 92/179 (51%), Gaps = 4/179 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +  VV   N +YS   L    +  A  +++  A F+ ++ +VVY 
Sbjct: 25  EAVTFWILGALALIGALAVVLAVNAVYSAMFLAMTMIILAVFYMVQDALFLGVVQVVVYT 84

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GAV++ FLF++M++ +D   +     RG  + +   GI    L+V     +       L+
Sbjct: 85  GAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVGTGIGFGILLVGGIGNVATGGFAGLT 144

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                G NVE +  +++ +Y +  E++  +L+ + IGA+VL   HR   +R+   ++L 
Sbjct: 145 AANANG-NVEGLAALIFFRYLWAFELTSALLITAAIGAMVLA--HRERFERRKTQRELS 200


>gi|300782460|ref|YP_003762751.1| NADH dehydrogenase I subunit J [Amycolatopsis mediterranei U32]
 gi|299791974|gb|ADJ42349.1| NADH dehydrogenase I subunit J [Amycolatopsis mediterranei U32]
          Length = 291

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 92/178 (51%), Gaps = 13/178 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   ++++ +  ++  RN ++S   L+   ++   L+++  A F+    ++VY 
Sbjct: 20  EAIAFWVLGPVSLLGALGMIFSRNAVHSALWLVLTMLSLGALYMIQSAPFLGFTQIIVYT 79

Query: 64  GAVIVFFLFIIMML-----DIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFS 116
           GA+++ FLF++M++     D  +EV   R +R  L +  +GI  A L+           +
Sbjct: 80  GAIMMLFLFVLMLVGRESSDSVVEVL--RGQR--LAATVLGIGLAALLATGIYRALENVT 135

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRRDIK 172
               L      G   + +G++++T Y +P E++  +L+ + IGA+VL    RH +  K
Sbjct: 136 PAIPLDSATPAGGGPKGLGRLIFTDYLFPFELTSALLITAAIGAMVLAFTDRHGKGGK 193


>gi|301165397|emb|CBW24968.1| putative NADH dehydrogenase chain J [Bacteriovorax marinus SJ]
          Length = 174

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 17/177 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F L + + +  ++ VV  RN +++   L+ +    AGL+  LGA+F+A   +VVY G
Sbjct: 4   NIMFILSALLTLAGAYGVVASRNIMHACVYLLASLFGIAGLYATLGADFLAATQMVVYAG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPR------KKRGFLGSFFIGILAAELIVCASNFMVFSA- 117
            V++  LF IM+     E A  R         G + +F IG L+A L++ +  F + +  
Sbjct: 64  GVVILMLFAIMLTGGHKE-AMNRFGINKIPSMGTVRTFVIGTLSA-LVLGSVAFKIIAGM 121

Query: 118 ----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                GEL         VE +G +L T +    EIS  +LL +++GA V+  R R+ 
Sbjct: 122 TKHVPGELPEFT---TTVEKLGVLLLTDHILAFEISSVLLLGALVGAAVIS-RPRKQ 174


>gi|104782529|ref|YP_609027.1| NADH dehydrogenase subunit J [Pseudomonas entomophila L48]
 gi|95111516|emb|CAK16236.1| NADH dehydrogenase I chain J [Pseudomonas entomophila L48]
          Length = 166

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y GA++
Sbjct: 5   FYFASGVAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           V F+F++MML++    A   ++RG+L     GI A  +I
Sbjct: 65  VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98


>gi|242092568|ref|XP_002436774.1| hypothetical protein SORBIDRAFT_10g008595 [Sorghum bicolor]
 gi|241914997|gb|EER88141.1| hypothetical protein SORBIDRAFT_10g008595 [Sorghum bicolor]
          Length = 103

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL +LL  +F AMI  VV++GA+++ FLF++
Sbjct: 9   ALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLDLDFSAMIFPVVHIGAIVISFLFVV 68

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           MM +I I        R  L S  IG++
Sbjct: 69  MMFNIQIAEIHEEVLRYLLVSGIIGLI 95


>gi|268627910|gb|ACZ13377.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1b]
 gi|268627913|gb|ACZ13379.1| NADH dehydrogenase subunit 6 [Keratoisis sp. B1c]
          Length = 70

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVY 59

Query: 63 VGAVIVFFLFI 73
          VGA+ + FLF+
Sbjct: 60 VGAIAILFLFV 70


>gi|320196147|gb|EFW70771.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli WV_060327]
          Length = 184

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 104/186 (55%), Gaps = 21/186 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++    +E  ++R +L    +IG  IL+A ++V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G  V  + +G  L+  Y   +E++  +LL  ++ A          + R++ + ++ S
Sbjct: 118 GIDGTPVSAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169

Query: 183 N-PDNS 187
           N  D+S
Sbjct: 170 NRKDDS 175


>gi|239905973|ref|YP_002952712.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio
          magneticus RS-1]
 gi|239795837|dbj|BAH74826.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio
          magneticus RS-1]
          Length = 174

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 50/80 (62%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M      FYLF+ + + ++ L  T RNP+++V   +  F++   +  +LGA   +++T+V
Sbjct: 1  MTPLGALFYLFAALGLGAAVLTATRRNPVHAVCCAVAVFLSVGAMLAVLGAPLPSVLTVV 60

Query: 61 VYVGAVIVFFLFIIMMLDID 80
          VY GA++V FLF+IM+L + 
Sbjct: 61 VYAGAIMVLFLFVIMLLGLP 80


>gi|321271265|gb|ADW79436.1| NADH dehydrogenase subunit 6 [Glomerella lindemuthiana]
          Length = 231

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 51/208 (24%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S  AI+ + L +  +NPI SV  LI  F + +   +LLG  F+ +  L+VY+GAV + FL
Sbjct: 24  SVFAILCAILTIVSKNPIVSVLFLIGLFGSVSSYLILLGLNFIGLSYLIVYIGAVSILFL 83

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--------------------VCASN 111
           FI+M+++I +   +   K     + FI IL   L+                    V A N
Sbjct: 84  FILMLINIRVSELQSNTKNSIPLALFITILFNYLVFQFLPYDLAILNNSNKGGSQVAALN 143

Query: 112 FMVFS-------AEGELSRLV------------------------FKGNNVENIGKVLYT 140
            +++        AE E S +V                        +K +++  IG +LYT
Sbjct: 144 NVLYHSSLASPFAERENSSIVKYQIYTVVIQIYCLQQVVGEMEIYYKPSHISTIGNILYT 203

Query: 141 QYAYPLEISGFILLLSMIGAIVLMLRHR 168
            ++  L ++ FILLL+MIGAIV+ ++ +
Sbjct: 204 SHSMWLLLASFILLLAMIGAIVITIKQK 231


>gi|11466192|ref|NP_066515.1| NADH dehydrogenase subunit 6 [Naegleria gruberi]
 gi|10444227|gb|AAG17793.1|AF288092_18 NADH dehydrogenase subunit 6 [Naegleria gruberi]
          Length = 201

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 51/71 (71%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          + F F+AIIS+  +V V NPI +V  LI  F N + +F+LL  +F+ ++ L++YVGA+ V
Sbjct: 6  FFFYFLAIISAICMVIVINPINAVLFLISVFFNTSMIFILLNVDFMGLLFLMIYVGAIAV 65

Query: 69 FFLFIIMMLDI 79
           FLFI+MML+I
Sbjct: 66 LFLFIVMMLNI 76


>gi|126666312|ref|ZP_01737291.1| NADH dehydrogenase subunit J [Marinobacter sp. ELB17]
 gi|126629113|gb|EAZ99731.1| NADH dehydrogenase subunit J [Marinobacter sp. ELB17]
          Length = 176

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL   +A++++  V++  NP++ V  L+ + +  A +F  LGA F   + ++VY GA++
Sbjct: 5  FYLSGLVAVLATLGVISNTNPVHGVLYLVVSLLAVAMVFFALGAPFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPR---KKRGFLGS 95
          V F+F++MML++ +  VA+ R   + R +LG 
Sbjct: 65 VLFVFVVMMLNLGETAVAQERIWLQPRTWLGP 96


>gi|271962240|ref|YP_003336436.1| NADH-ubiquinone oxidoreductase protein, chain J [Streptosporangium
           roseum DSM 43021]
 gi|270505415|gb|ACZ83693.1| putative NADH-ubiquinone oxidoreductase protein, chain J
           [Streptosporangium roseum DSM 43021]
          Length = 178

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 10/174 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F L   +A+ S+ LVVT R  +++   L+  F   AG +L+L AEFVA + +++YV
Sbjct: 13  QEIVFLLLGAVAVGSALLVVTTRQLVHAALWLVVCFGALAGGYLVLTAEFVAWVQVLIYV 72

Query: 64  GAVIVFFLFIIMMLDIDI-EVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GA++   LF IM+    I   A+   + R       I   A  + V    F    A  E 
Sbjct: 73  GAIVALLLFGIMLTRAPIGRTADLDSRNRPAAAVVAIATAAVLVTVVIDGFRTAYAPLEP 132

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                 G + + +G  ++  +  P E    +LL +++GAIVL    R DI+ +D
Sbjct: 133 G-----GGSAKELGSSIFRNWVLPFEALSVLLLAALVGAIVL---SRTDIRGRD 178


>gi|297616448|ref|YP_003701607.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144285|gb|ADI01042.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 166

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 5/164 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++ FY+ + + +  +  VV   N + + F L+ +F+  A L+ LLGA+F+ ++ ++
Sbjct: 1   MTWEAVTFYILAVVTVTGAAGVVFSSNIVRAAFFLVASFLGVAALYFLLGADFLGLVQIM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEG 119
           +Y GAV V  +F +M++  D    + R+   F   S + G   A L+  A    V+    
Sbjct: 61  IYAGAVSVLVIFAVMLVIKD----DIRRTSLFHPVSRWWGAAIAVLLTTALGKAVWQTSF 116

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
               L  + + V  + K+L   Y    E++  +LL++++GAI+L
Sbjct: 117 PAKGLAVETDRVGQMAKLLLGDYVVAFEVAAVLLLVAIVGAIIL 160


>gi|186685675|ref|YP_001868871.1| NADH dehydrogenase subunit J [Nostoc punctiforme PCC 73102]
 gi|186468127|gb|ACC83928.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nostoc
           punctiforme PCC 73102]
          Length = 204

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE-VAEPR 87
           +YS F L   F++ AG++LLL  +FVA   +++YVGAV V  LF IM+++   + VA P 
Sbjct: 33  VYSAFMLGGVFISMAGIYLLLNGDFVAAAQILIYVGAVNVLILFAIMLVNKRQDFVAFPN 92

Query: 88  KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-NNVENIGKVLYTQYAYPL 146
               ++     G+++  L    S  ++ +     +  V  G +++  IG+  +T +  P 
Sbjct: 93  S---WVRKLLTGLVSVGLFGLLSTMVLATPWAYSTTPVVGGESSIVVIGEHFFTDFLLPF 149

Query: 147 EISGFILLLSMIGAIVLMLRH--RRDIKRQDISK---QLESNP 184
           E++  +LL++M+GAI+L  R      + R ++ +    L+  P
Sbjct: 150 ELASILLLIAMVGAIILARREYLPDQLTRSNVGQTVLTLQERP 192


>gi|330470208|ref|YP_004407951.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Verrucosispora maris AB-18-032]
 gi|328813179|gb|AEB47351.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Verrucosispora maris AB-18-032]
          Length = 204

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A+ S  LVV+ R+ + +   L+      AG++L+L AE VA + +++YVGAV+V  LF 
Sbjct: 14  VAVGSGVLVVSTRHLVRAGLYLVVCLGAVAGMYLVLTAELVAWVQVLIYVGAVVVLLLFA 73

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133
           +M+    I  ++   + G+  +   G +   L     +   ++   EL     +    E 
Sbjct: 74  VMLTRAPIGASDDLDRPGWPAALIGGGVGLGLAALLIDAFRWTTV-ELP----EAGTAER 128

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           IG+ ++  +  P E+   +LL +++GAIVL    R DI R
Sbjct: 129 IGEQVFASWVLPFEVLSILLLSALVGAIVL---SRPDIGR 165


>gi|149374619|ref|ZP_01892393.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
 gi|149361322|gb|EDM49772.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
          Length = 180

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 59/94 (62%), Gaps = 5/94 (5%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          L FY+   +A++++  V+T  +P+++V  LI + +  A +F  LGA F   + ++VY GA
Sbjct: 3  LAFYVCGLVAVLATIGVITGTSPVHAVVYLIVSLIAVALVFFALGAPFAGALEIIVYAGA 62

Query: 66 VIVFFLFIIMMLDI--DIEVAEP--RKKRGFLGS 95
          ++V F+F++MML++  D E  EP  R  R ++G 
Sbjct: 63 IMVLFVFVVMMLNLRSDAE-QEPSWRNPRHWVGP 95


>gi|15806508|ref|NP_295219.1| NADH dehydrogenase I subunit J [Deinococcus radiodurans R1]
 gi|6459253|gb|AAF11059.1|AE001993_9 NADH dehydrogenase I, J subunit [Deinococcus radiodurans R1]
          Length = 205

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 5/167 (2%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
            V  +N +++   L+   +  AGLF  + A F+A   ++VY GA++V FLF+IM+L    
Sbjct: 19  TVAAKNAVHAALGLVGTLICVAGLFASMNASFLAATQVIVYAGAIMVLFLFVIMLLGASQ 78

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV--FKGNNVENIGKVLY 139
            +   R    F+G               +  + +     L+  V   +G     +G+ L 
Sbjct: 79  PITA-RDPLPFVGPLGAIAALLLAGGFVTLALTYQDPRPLAESVQALRGGAAGAVGETLL 137

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR--HRRDIKRQDISKQLESNP 184
           T++  P E    +LL++++G++ L+ R   + D    +   +L   P
Sbjct: 138 TRFLLPFEAVSILLLVAIVGSVTLVQRPVPQPDGVTDETGAELPPAP 184


>gi|11465891|ref|NP_066440.1| NADH dehydrogenase subunit 6 [Ochromonas danica]
 gi|10505224|gb|AAG18406.1|AF287134_31 NADH dehydrogenase subunit 6 [Ochromonas danica]
          Length = 205

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 35/192 (18%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV   +PI SV  LI AF  A  +  L   +F  ++ +++YVGA+ V FLF++MML+I +
Sbjct: 19  VVFSTSPIESVLFLILAFCIAGIILFLFNLDFFGIMFIIIYVGAIAVLFLFVVMMLNIKL 78

Query: 82  EVAEPRKKRGFLGSF------------------FIGILAAELIVCASNFMVFSAEGELSR 123
           +         FL  F                  F+ + +   I       +F+++   S 
Sbjct: 79  Q-------YNFLDRFTFKNIVYILIVLLLLYTIFLNLYSQIFIEMP---FLFNSDLLYSY 128

Query: 124 LVF-KG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            +  KG     +N++  G+VLY  ++  + ++GFILL++++G IVL L H    K +++ 
Sbjct: 129 TIIEKGIFDHLSNIKVFGQVLYNYFSLYVPLAGFILLIALVGVIVLTL-HFNKFKNKELD 187

Query: 178 KQLESNPDNSIV 189
            +  S  DN IV
Sbjct: 188 FRQLSRSDNFIV 199


>gi|27464565|gb|AAO16136.1| NADH dehydrogenase subunit 6 [Alcyonium variabile]
          Length = 147

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 7/144 (4%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+E IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185
           +L  +    +     S+ L S  D
Sbjct: 114 LLAKQPNSPVLYNSHSESLRSRQD 137


>gi|15802827|ref|NP_288854.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 EDL933]
 gi|15832418|ref|NP_311191.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str. Sakai]
 gi|16130215|ref|NP_416783.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K-12 substr. MG1655]
 gi|24113652|ref|NP_708162.1| NADH dehydrogenase subunit J [Shigella flexneri 2a str. 301]
 gi|26248667|ref|NP_754707.1| NADH dehydrogenase subunit J [Escherichia coli CFT073]
 gi|30063706|ref|NP_837877.1| NADH dehydrogenase subunit J [Shigella flexneri 2a str. 2457T]
 gi|74312798|ref|YP_311217.1| NADH dehydrogenase subunit J [Shigella sonnei Ss046]
 gi|82544758|ref|YP_408705.1| NADH dehydrogenase subunit J [Shigella boydii Sb227]
 gi|82777688|ref|YP_404037.1| NADH dehydrogenase subunit J [Shigella dysenteriae Sd197]
 gi|89109098|ref|AP_002878.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K-12 substr. W3110]
 gi|91211572|ref|YP_541558.1| NADH dehydrogenase subunit J [Escherichia coli UTI89]
 gi|110642484|ref|YP_670214.1| NADH dehydrogenase subunit J [Escherichia coli 536]
 gi|110806243|ref|YP_689763.1| NADH dehydrogenase subunit J [Shigella flexneri 5 str. 8401]
 gi|117624469|ref|YP_853382.1| NADH dehydrogenase subunit J [Escherichia coli APEC O1]
 gi|157157709|ref|YP_001463623.1| NADH dehydrogenase subunit J [Escherichia coli E24377A]
 gi|157161768|ref|YP_001459086.1| NADH dehydrogenase subunit J [Escherichia coli HS]
 gi|168748129|ref|ZP_02773151.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755032|ref|ZP_02780039.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761281|ref|ZP_02786288.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767906|ref|ZP_02792913.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772994|ref|ZP_02798001.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780135|ref|ZP_02805142.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787187|ref|ZP_02812194.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798450|ref|ZP_02823457.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170019411|ref|YP_001724365.1| NADH dehydrogenase subunit J [Escherichia coli ATCC 8739]
 gi|170081897|ref|YP_001731217.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170681867|ref|YP_001744478.1| NADH dehydrogenase subunit J [Escherichia coli SMS-3-5]
 gi|187731180|ref|YP_001881101.1| NADH dehydrogenase subunit J [Shigella boydii CDC 3083-94]
 gi|188491681|ref|ZP_02998951.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 53638]
 gi|191166504|ref|ZP_03028334.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B7A]
 gi|191170098|ref|ZP_03031652.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli F11]
 gi|193062313|ref|ZP_03043408.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E22]
 gi|193068217|ref|ZP_03049181.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E110019]
 gi|194427097|ref|ZP_03059648.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B171]
 gi|194433331|ref|ZP_03065611.1| NADH-quinone oxidoreductase, J subunit [Shigella dysenteriae 1012]
 gi|194436249|ref|ZP_03068351.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 101-1]
 gi|195935657|ref|ZP_03081039.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str. EC4024]
 gi|208807034|ref|ZP_03249371.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208812963|ref|ZP_03254292.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208818254|ref|ZP_03258574.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209397133|ref|YP_002271689.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209919728|ref|YP_002293812.1| NADH dehydrogenase subunit J [Escherichia coli SE11]
 gi|215487493|ref|YP_002329924.1| NADH dehydrogenase subunit J [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327964|ref|ZP_03444047.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218548271|ref|YP_002382062.1| NADH dehydrogenase subunit J [Escherichia fergusonii ATCC 35469]
 gi|218554836|ref|YP_002387749.1| NADH dehydrogenase subunit J [Escherichia coli IAI1]
 gi|218559193|ref|YP_002392106.1| NADH dehydrogenase subunit J [Escherichia coli S88]
 gi|218690440|ref|YP_002398652.1| NADH dehydrogenase subunit J [Escherichia coli ED1a]
 gi|218695879|ref|YP_002403546.1| NADH dehydrogenase subunit J [Escherichia coli 55989]
 gi|218700754|ref|YP_002408383.1| NADH dehydrogenase subunit J [Escherichia coli IAI39]
 gi|218705810|ref|YP_002413329.1| NADH dehydrogenase subunit J [Escherichia coli UMN026]
 gi|227887336|ref|ZP_04005141.1| NADH dehydrogenase subunit J [Escherichia coli 83972]
 gi|237704754|ref|ZP_04535235.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|238901455|ref|YP_002927251.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli BW2952]
 gi|253772798|ref|YP_003035629.1| NADH dehydrogenase subunit J [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162289|ref|YP_003045397.1| NADH dehydrogenase subunit J [Escherichia coli B str. REL606]
 gi|254794172|ref|YP_003079009.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017564|ref|ZP_05431429.1| NADH dehydrogenase subunit J [Shigella sp. D9]
 gi|256022036|ref|ZP_05435901.1| NADH dehydrogenase subunit J [Escherichia sp. 4_1_40B]
 gi|260844867|ref|YP_003222645.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O103:H2 str. 12009]
 gi|260856324|ref|YP_003230215.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O26:H11 str. 11368]
 gi|260869003|ref|YP_003235405.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O111:H- str. 11128]
 gi|261223266|ref|ZP_05937547.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261259184|ref|ZP_05951717.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O157:H7 str. FRIK966]
 gi|293405746|ref|ZP_06649738.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1412]
 gi|293410640|ref|ZP_06654216.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B354]
 gi|293446617|ref|ZP_06663039.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B088]
 gi|297518347|ref|ZP_06936733.1| NADH dehydrogenase subunit J [Escherichia coli OP50]
 gi|298381429|ref|ZP_06991028.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1302]
 gi|300818120|ref|ZP_07098332.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 107-1]
 gi|300822151|ref|ZP_07102293.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 119-7]
 gi|300896954|ref|ZP_07115435.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 198-1]
 gi|300903665|ref|ZP_07121581.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 84-1]
 gi|300918555|ref|ZP_07135145.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 115-1]
 gi|300924539|ref|ZP_07140503.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 182-1]
 gi|300936844|ref|ZP_07151733.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 21-1]
 gi|300948576|ref|ZP_07162669.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 116-1]
 gi|300956460|ref|ZP_07168749.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 175-1]
 gi|300981078|ref|ZP_07175350.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 200-1]
 gi|300983375|ref|ZP_07176559.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 45-1]
 gi|301024078|ref|ZP_07187792.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 69-1]
 gi|301026950|ref|ZP_07190343.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 196-1]
 gi|301049033|ref|ZP_07196018.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 185-1]
 gi|301303261|ref|ZP_07209386.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 124-1]
 gi|301328772|ref|ZP_07221820.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 78-1]
 gi|301647623|ref|ZP_07247419.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 146-1]
 gi|306814609|ref|ZP_07448771.1| NADH dehydrogenase subunit J [Escherichia coli NC101]
 gi|307138944|ref|ZP_07498300.1| NADH dehydrogenase subunit J [Escherichia coli H736]
 gi|307311160|ref|ZP_07590804.1| NADH dehydrogenase (quinone) [Escherichia coli W]
 gi|309785016|ref|ZP_07679649.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella dysenteriae 1617]
 gi|309793159|ref|ZP_07687587.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 145-7]
 gi|312967578|ref|ZP_07781793.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 2362-75]
 gi|312973461|ref|ZP_07787633.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 1827-70]
 gi|331642918|ref|ZP_08344053.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H736]
 gi|331647935|ref|ZP_08349027.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli M605]
 gi|331653722|ref|ZP_08354723.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli M718]
 gi|331658360|ref|ZP_08359322.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA206]
 gi|331663794|ref|ZP_08364704.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA143]
 gi|331668978|ref|ZP_08369826.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA271]
 gi|331673785|ref|ZP_08374548.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA280]
 gi|331678226|ref|ZP_08378901.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H591]
 gi|331683952|ref|ZP_08384548.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H299]
 gi|332278574|ref|ZP_08390987.1| NADH:ubiquinone oxidoreductase membrane subunit J [Shigella sp. D9]
 gi|84028757|sp|P0AFE2|NUOJ_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J; AltName: Full=NUO10
 gi|84028758|sp|P0AFE1|NUOJ_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J; AltName: Full=NUO10
 gi|84028759|sp|P0AFE0|NUOJ_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J; AltName: Full=NUO10
 gi|84028760|sp|P0AFE3|NUOJ_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|12516630|gb|AAG57409.1|AE005460_3 NADH dehydrogenase I chain J [Escherichia coli O157:H7 str. EDL933]
 gi|26109072|gb|AAN81275.1|AE016763_234 NADH dehydrogenase I chain J [Escherichia coli CFT073]
 gi|1788616|gb|AAC75340.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1799640|dbj|BAA16108.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K12 substr. W3110]
 gi|13362634|dbj|BAB36587.1| NADH dehydrogenase I chain J [Escherichia coli O157:H7 str. Sakai]
 gi|24052716|gb|AAN43869.1| NADH dehydrogenase I chain J [Shigella flexneri 2a str. 301]
 gi|30041961|gb|AAP17687.1| NADH dehydrogenase I chain J [Shigella flexneri 2a str. 2457T]
 gi|73856275|gb|AAZ88982.1| NADH dehydrogenase I chain J [Shigella sonnei Ss046]
 gi|81241836|gb|ABB62546.1| NADH dehydrogenase I chain J [Shigella dysenteriae Sd197]
 gi|81246169|gb|ABB66877.1| NADH dehydrogenase I chain J [Shigella boydii Sb227]
 gi|91073146|gb|ABE08027.1| NADH dehydrogenase I chain J [Escherichia coli UTI89]
 gi|110344076|gb|ABG70313.1| NADH dehydrogenase I chain J [Escherichia coli 536]
 gi|110615791|gb|ABF04458.1| NADH dehydrogenase I chain J [Shigella flexneri 5 str. 8401]
 gi|115513593|gb|ABJ01668.1| NADH dehydrogenase I chain J [Escherichia coli APEC O1]
 gi|157067448|gb|ABV06703.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli HS]
 gi|157079739|gb|ABV19447.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E24377A]
 gi|169754339|gb|ACA77038.1| NADH dehydrogenase (quinone) [Escherichia coli ATCC 8739]
 gi|169889732|gb|ACB03439.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170519585|gb|ACB17763.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli SMS-3-5]
 gi|187428172|gb|ACD07446.1| NADH-quinone oxidoreductase, J subunit [Shigella boydii CDC
           3083-94]
 gi|187771333|gb|EDU35177.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017289|gb|EDU55411.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188486880|gb|EDU61983.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 53638]
 gi|189002049|gb|EDU71035.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357621|gb|EDU76040.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189363001|gb|EDU81420.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368227|gb|EDU86643.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372886|gb|EDU91302.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189378912|gb|EDU97328.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190903464|gb|EDV63183.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B7A]
 gi|190909614|gb|EDV69199.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli F11]
 gi|192931979|gb|EDV84578.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E22]
 gi|192958496|gb|EDV88935.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E110019]
 gi|194414718|gb|EDX30989.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B171]
 gi|194418425|gb|EDX34514.1| NADH-quinone oxidoreductase, J subunit [Shigella dysenteriae 1012]
 gi|194424977|gb|EDX40962.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 101-1]
 gi|208726835|gb|EDZ76436.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208734240|gb|EDZ82927.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208738377|gb|EDZ86059.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209158533|gb|ACI35966.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765148|gb|ACI80886.1| NADH dehydrogenase I chain J [Escherichia coli]
 gi|209765150|gb|ACI80887.1| NADH dehydrogenase I chain J [Escherichia coli]
 gi|209765152|gb|ACI80888.1| NADH dehydrogenase I chain J [Escherichia coli]
 gi|209765156|gb|ACI80890.1| NADH dehydrogenase I chain J [Escherichia coli]
 gi|209912987|dbj|BAG78061.1| NADH dehydrogenase I chain J [Escherichia coli SE11]
 gi|215265565|emb|CAS09968.1| NADH: ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217320331|gb|EEC28756.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218352611|emb|CAU98392.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli 55989]
 gi|218355812|emb|CAQ88425.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           fergusonii ATCC 35469]
 gi|218361604|emb|CAQ99196.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli IAI1]
 gi|218365962|emb|CAR03706.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli S88]
 gi|218370740|emb|CAR18553.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli IAI39]
 gi|218428004|emb|CAR08775.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli ED1a]
 gi|218432907|emb|CAR13801.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli UMN026]
 gi|222034036|emb|CAP76777.1| NadH-quinone oxidoreductase subunit J [Escherichia coli LF82]
 gi|226901120|gb|EEH87379.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|227835686|gb|EEJ46152.1| NADH dehydrogenase subunit J [Escherichia coli 83972]
 gi|238861875|gb|ACR63873.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli BW2952]
 gi|242377913|emb|CAQ32682.1| NADH:ubiquinone oxidoreductase, membrane subunit J, subunit of
           NADH:ubiquinone oxidoreductase I [Escherichia coli
           BL21(DE3)]
 gi|253323842|gb|ACT28444.1| NADH dehydrogenase (quinone) [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974190|gb|ACT39861.1| NADH dehydrogenase subunit J [Escherichia coli B str. REL606]
 gi|253978357|gb|ACT44027.1| NADH dehydrogenase subunit J [Escherichia coli BL21(DE3)]
 gi|254593572|gb|ACT72933.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O157:H7 str. TW14359]
 gi|257754973|dbj|BAI26475.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O26:H11 str. 11368]
 gi|257760014|dbj|BAI31511.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O103:H2 str. 12009]
 gi|257765359|dbj|BAI36854.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O111:H- str. 11128]
 gi|260448627|gb|ACX39049.1| NADH dehydrogenase (quinone) [Escherichia coli DH1]
 gi|281179367|dbj|BAI55697.1| NADH dehydrogenase I chain J [Escherichia coli SE15]
 gi|281601721|gb|ADA74705.1| NADH-quinone oxidoreductase subunit J [Shigella flexneri 2002017]
 gi|284922268|emb|CBG35353.1| NADH-quinone oxidoreductase chain J [Escherichia coli 042]
 gi|291323447|gb|EFE62875.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B088]
 gi|291427954|gb|EFF00981.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1412]
 gi|291471108|gb|EFF13592.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B354]
 gi|294489634|gb|ADE88390.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli IHE3034]
 gi|298278871|gb|EFI20385.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1302]
 gi|299879497|gb|EFI87708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 196-1]
 gi|300299142|gb|EFJ55527.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 185-1]
 gi|300307691|gb|EFJ62211.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 200-1]
 gi|300316730|gb|EFJ66514.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 175-1]
 gi|300359222|gb|EFJ75092.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 198-1]
 gi|300396734|gb|EFJ80272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 69-1]
 gi|300404321|gb|EFJ87859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 84-1]
 gi|300408541|gb|EFJ92079.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 45-1]
 gi|300414290|gb|EFJ97600.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 115-1]
 gi|300419257|gb|EFK02568.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 182-1]
 gi|300451924|gb|EFK15544.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 116-1]
 gi|300458031|gb|EFK21524.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 21-1]
 gi|300525281|gb|EFK46350.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 119-7]
 gi|300529264|gb|EFK50326.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 107-1]
 gi|300841435|gb|EFK69195.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 124-1]
 gi|300844834|gb|EFK72594.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 78-1]
 gi|301074250|gb|EFK89056.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 146-1]
 gi|305852003|gb|EFM52455.1| NADH dehydrogenase subunit J [Escherichia coli NC101]
 gi|306908666|gb|EFN39163.1| NADH dehydrogenase (quinone) [Escherichia coli W]
 gi|307554342|gb|ADN47117.1| NADH dehydrogenase I chain J [Escherichia coli ABU 83972]
 gi|307626184|gb|ADN70488.1| NADH dehydrogenase subunit J [Escherichia coli UM146]
 gi|308123445|gb|EFO60707.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 145-7]
 gi|308927386|gb|EFP72860.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella dysenteriae 1617]
 gi|309702592|emb|CBJ01920.1| NADH-quinone oxidoreductase chain J [Escherichia coli ETEC H10407]
 gi|310332056|gb|EFP99291.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 1827-70]
 gi|312287775|gb|EFR15680.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 2362-75]
 gi|312946898|gb|ADR27725.1| NADH dehydrogenase subunit J [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313651103|gb|EFS15502.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri 2a str. 2457T]
 gi|315061572|gb|ADT75899.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli W]
 gi|315136914|dbj|BAJ44073.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli DH1]
 gi|315255214|gb|EFU35182.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 85-1]
 gi|315285920|gb|EFU45358.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 110-3]
 gi|315292247|gb|EFU51599.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 153-1]
 gi|315298121|gb|EFU57390.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 16-3]
 gi|315615549|gb|EFU96181.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 3431]
 gi|320177162|gb|EFW52174.1| NADH-ubiquinone oxidoreductase chain J [Shigella dysenteriae CDC
           74-1112]
 gi|320183375|gb|EFW58227.1| NADH-ubiquinone oxidoreductase chain J [Shigella flexneri CDC
           796-83]
 gi|320192099|gb|EFW66744.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7
           str. EC1212]
 gi|320199868|gb|EFW74457.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli EC4100B]
 gi|320641107|gb|EFX10586.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H7
           str. G5101]
 gi|320646495|gb|EFX15414.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H-
           str. 493-89]
 gi|320651592|gb|EFX19972.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H-
           str. H 2687]
 gi|320657344|gb|EFX25146.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320667864|gb|EFX34772.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H7
           str. LSU-61]
 gi|323156430|gb|EFZ42585.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli EPECa14]
 gi|323161614|gb|EFZ47499.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli E128010]
 gi|323171961|gb|EFZ57605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli LT-68]
 gi|323176795|gb|EFZ62385.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 1180]
 gi|323184401|gb|EFZ69777.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 1357]
 gi|323187995|gb|EFZ73290.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli RN587/1]
 gi|323377848|gb|ADX50116.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli KO11]
 gi|323936570|gb|EGB32857.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli E1520]
 gi|323941023|gb|EGB37210.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli E482]
 gi|323944793|gb|EGB40859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli H120]
 gi|323956046|gb|EGB51799.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli H263]
 gi|323961463|gb|EGB57073.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli H489]
 gi|323967721|gb|EGB63133.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli M863]
 gi|323973015|gb|EGB68209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli TA007]
 gi|323977519|gb|EGB72605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli TW10509]
 gi|324006670|gb|EGB75889.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 57-2]
 gi|324013180|gb|EGB82399.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 60-1]
 gi|324020876|gb|EGB90095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 117-3]
 gi|324112812|gb|EGC06788.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           fergusonii B253]
 gi|324117842|gb|EGC11741.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli E1167]
 gi|325496685|gb|EGC94544.1| NADH dehydrogenase subunit J [Escherichia fergusonii ECD227]
 gi|326339631|gb|EGD63442.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7
           str. 1125]
 gi|326344093|gb|EGD67854.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7
           str. 1044]
 gi|327252550|gb|EGE64209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli STEC_7v]
 gi|330912105|gb|EGH40615.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli AA86]
 gi|331039716|gb|EGI11936.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H736]
 gi|331043659|gb|EGI15797.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli M605]
 gi|331048571|gb|EGI20647.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli M718]
 gi|331056608|gb|EGI28617.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA206]
 gi|331059593|gb|EGI31570.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA143]
 gi|331064172|gb|EGI36083.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA271]
 gi|331069058|gb|EGI40450.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA280]
 gi|331074686|gb|EGI46006.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H591]
 gi|331078904|gb|EGI50106.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H299]
 gi|332088410|gb|EGI93528.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella boydii 5216-82]
 gi|332090625|gb|EGI95721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella dysenteriae 155-74]
 gi|332093678|gb|EGI98736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella boydii 3594-74]
 gi|332100926|gb|EGJ04272.1| NADH:ubiquinone oxidoreductase membrane subunit J [Shigella sp. D9]
 gi|332344061|gb|AEE57395.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Escherichia
           coli UMNK88]
 gi|332754928|gb|EGJ85293.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri 4343-70]
 gi|332755329|gb|EGJ85693.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri K-671]
 gi|332756223|gb|EGJ86574.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri 2747-71]
 gi|333001424|gb|EGK20992.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri VA-6]
 gi|333001957|gb|EGK21523.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri K-218]
 gi|333002647|gb|EGK22207.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri K-272]
 gi|333016220|gb|EGK35551.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri K-304]
 gi|333016531|gb|EGK35861.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri K-227]
          Length = 184

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 104/186 (55%), Gaps = 21/186 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++    +E  ++R +L    +IG  IL+A ++V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G  +  + +G  L+  Y   +E++  +LL  ++ A          + R++ + ++ S
Sbjct: 118 GIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169

Query: 183 N-PDNS 187
           N  D+S
Sbjct: 170 NRKDDS 175


>gi|288917192|ref|ZP_06411561.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp.
           EUN1f]
 gi|288351383|gb|EFC85591.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp.
           EUN1f]
          Length = 317

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 19/185 (10%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F+L + +A+I+   +V +R+ ++S   L+      A  +LL  A F+  + ++VY 
Sbjct: 19  EAWTFWLLAPVALIAGLGMVLMRSAVHSALLLVVNLFCVAVFYLLQDAPFLGFVQIIVYT 78

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILA---AELIVCASNFMV 114
           GA++V FLF++M++ +D   +     RG       LG  F G+L       I   S   +
Sbjct: 79  GAIMVLFLFVLMLVGVDSSDSLVETLRGQRIAAVILGLGFAGLLVFPIGRAIDGGSAAGL 138

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            +A  E         NV  IGK+L+++Y +  E    +L+++ IG +V  L HR     +
Sbjct: 139 DAANSE--------GNVTAIGKLLFSEYVFVFEAISALLVVAAIGTMV--LGHREHTGEK 188

Query: 175 DISKQ 179
              K+
Sbjct: 189 LTQKE 193


>gi|293395178|ref|ZP_06639464.1| NADH dehydrogenase I subunit J [Serratia odorifera DSM 4582]
 gi|291422355|gb|EFE95598.1| NADH dehydrogenase I subunit J [Serratia odorifera DSM 4582]
          Length = 186

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL   +AI+++  V++  NP++++  LI + +  + +F  LGA F A + ++VY GA++
Sbjct: 5  FYLAGLIAILATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
          V F+F++MML++   V + +++     S +IG
Sbjct: 65 VLFVFVVMMLNLGNAVQQ-QEREWLKPSLWIG 95


>gi|291283521|ref|YP_003500339.1| NADH-quinone oxidoreductase subunit J [Escherichia coli O55:H7
          str. CB9615]
 gi|209765154|gb|ACI80889.1| NADH dehydrogenase I chain J [Escherichia coli]
 gi|290763394|gb|ADD57355.1| NADH-quinone oxidoreductase subunit J [Escherichia coli O55:H7
          str. CB9615]
 gi|320663046|gb|EFX30363.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O55:H7
          str. USDA 5905]
          Length = 184

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88
          V F+F++MML++   E+ + R+
Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86


>gi|300931367|ref|ZP_07146698.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 187-1]
 gi|300460829|gb|EFK24322.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 187-1]
          Length = 184

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 104/186 (55%), Gaps = 21/186 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++    +E  ++R +L    +IG  IL+A ++V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G  +  + +G  L+  Y   +E++  +LL  ++ A          + R++ + ++ S
Sbjct: 118 GIDGTPIIAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169

Query: 183 N-PDNS 187
           N  D+S
Sbjct: 170 NRKDDS 175


>gi|237732311|ref|ZP_04562792.1| NADH:ubiquinone oxidoreductase [Citrobacter sp. 30_2]
 gi|283832290|ref|ZP_06352031.1| NADH-quinone oxidoreductase, J subunit [Citrobacter youngae ATCC
           29220]
 gi|226907850|gb|EEH93768.1| NADH:ubiquinone oxidoreductase [Citrobacter sp. 30_2]
 gi|291071935|gb|EFE10044.1| NADH-quinone oxidoreductase, J subunit [Citrobacter youngae ATCC
           29220]
          Length = 184

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 102/185 (55%), Gaps = 20/185 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++    +E  ++R +L    +IG  IL+A ++V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G  +  + +G  L+  Y   +E++  +LL  ++ A          + R++ S ++ S
Sbjct: 118 GIDGTPISAKAVGISLFGPYVLAVELASMLLLAGLVVAF--------HVGREERSGEVLS 169

Query: 183 NPDNS 187
           N  + 
Sbjct: 170 NRTDD 174


>gi|227488699|ref|ZP_03919015.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091360|gb|EEI26672.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 282

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ + + I  +  +V  +  I+S   L+   V  A  +  +GA FV ++ +VVY GAV+V
Sbjct: 27  WILAAVIIAGAIGMVMCKELIHSALCLLLVMVGVAIEYATMGAPFVFVVQIVVYAGAVMV 86

Query: 69  FFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVC---ASNFMVFSAEGELSRL 124
             LFI+MM+    E A+  K   G   +   G+ A  L+     A N    +A   +S  
Sbjct: 87  MILFIVMMVGARGEAADGEKTATGTSHTVLTGVAAIALLALIGIAVNMSTLTAPRGMSEA 146

Query: 125 -VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQ 174
               G NV  +G  ++ +Y    E+   +L+++ +GA++++ R R   R  +R+
Sbjct: 147 NAEHGGNVAGLGVEIFNKYVVGFEVLSALLIVAAVGAMIMIFRVRAVKRSTQRE 200


>gi|227542302|ref|ZP_03972351.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181902|gb|EEI62874.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 283

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ + + I  +  +V  +  I+S   L+   V  A  +  +GA FV ++ +VVY GAV+V
Sbjct: 28  WILAAVIIAGAIGMVMCKELIHSALCLLLVMVGVAIEYATMGAPFVFVVQIVVYAGAVMV 87

Query: 69  FFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVC---ASNFMVFSAEGELSRL 124
             LFI+MM+    E A+  K   G   +   G+ A  L+     A N    +A   +S  
Sbjct: 88  MILFIVMMVGARGEAADGEKTATGTSHTVLTGVAAIALLALIGIAVNMSTLTAPRGMSEA 147

Query: 125 -VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQ 174
               G NV  +G  ++ +Y    E+   +L+++ +GA++++ R R   R  +R+
Sbjct: 148 NAEHGGNVAGLGVEIFNKYVVGFEVLSALLIVAAVGAMIMIFRVRAVKRSTQRE 201


>gi|293415573|ref|ZP_06658216.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B185]
 gi|291433221|gb|EFF06200.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B185]
          Length = 184

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 104/186 (55%), Gaps = 21/186 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5   FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++    +E  ++R +L    +IG  IL+A ++V     +V++  G ++  
Sbjct: 65  VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
              G  +  + +G  L+  Y   +E++  +LL  ++ A          + R++ + ++ S
Sbjct: 118 GIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169

Query: 183 N-PDNS 187
           N  D+S
Sbjct: 170 NRKDDS 175


>gi|78188618|ref|YP_378956.1| NADH dehydrogenase I subunit 6 [Chlorobium chlorochromatii CaD3]
 gi|78170817|gb|ABB27913.1| NADH dehydrogenase subunit J [Chlorobium chlorochromatii CaD3]
          Length = 171

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 48/71 (67%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYLF+ + ++S+  VV  RN IYS FSL+F F   A L++ L A+F+A+  +VVYVG ++
Sbjct: 11 FYLFAAITVLSAAYVVFTRNVIYSAFSLLFTFFGMAALYVFLSADFIAVTQVVVYVGGIL 70

Query: 68 VFFLFIIMMLD 78
          V  LF +M  +
Sbjct: 71 VLLLFGVMFTN 81


>gi|296130542|ref|YP_003637792.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas
           flavigena DSM 20109]
 gi|296022357|gb|ADG75593.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas
           flavigena DSM 20109]
          Length = 325

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 98/185 (52%), Gaps = 7/185 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F+    + ++++  ++  R  +++  ++IF  ++ A L++  GAEF+ ++ +VVY 
Sbjct: 25  EAVLFWTLGPLMVLAALGLLLARKAVHAALAVIFIMISLAFLYVAQGAEFLGVVQVVVYT 84

Query: 64  GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV++ FLF++M++ +D    + E  + + ++G      L   L          + EG  
Sbjct: 85  GAVMMLFLFVLMLVGVDRSDSLVETIRGQRWIGLLAGLGLGVVLAGVVGRATYGAPEGLA 144

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISK 178
           +    + +N E +  V++ Q+   +E+ G +L+ + +GA+VL  R R   R  +R+   +
Sbjct: 145 T--ANQPSNPEAVAHVIFGQHVLAMEVVGALLVTAALGALVLTHRGRLAPRVTQRERAER 202

Query: 179 QLESN 183
           +L   
Sbjct: 203 RLRDG 207


>gi|320178747|gb|EFW53710.1| NADH-ubiquinone oxidoreductase chain J [Shigella boydii ATCC
          9905]
          Length = 184

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88
          V F+F++MML++   E+ + R+
Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86


>gi|323260324|gb|EGA43943.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
          Length = 284

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  L+ + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88
          V F+F++MML++   E+ + R+
Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86


>gi|283786348|ref|YP_003366213.1| NADH-quinone oxidoreductase chain J [Citrobacter rodentium
          ICC168]
 gi|282949802|emb|CBG89425.1| NADH-quinone oxidoreductase chain J [Citrobacter rodentium
          ICC168]
          Length = 184

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88
          V F+F++MML++   E+ + R+
Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86


>gi|157144789|ref|YP_001452108.1| NADH dehydrogenase subunit J [Citrobacter koseri ATCC BAA-895]
 gi|157081994|gb|ABV11672.1| hypothetical protein CKO_00516 [Citrobacter koseri ATCC BAA-895]
          Length = 184

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88
          V F+F++MML++   E+ + R+
Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86


>gi|304311503|ref|YP_003811101.1| NADH dehydrogenase, chain J [gamma proteobacterium HdN1]
 gi|301797236|emb|CBL45456.1| NADH dehydrogenase, chain J [gamma proteobacterium HdN1]
          Length = 153

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 23/159 (14%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA- 84
           RNP++ +  +I + +  A +F  +GA F A + ++VY GA++V F+F++MML++  EV  
Sbjct: 7   RNPVHGLLYMIVSLLAVAMVFFAVGAPFAAALEMIVYAGAIMVLFVFVVMMLNLGGEVEL 66

Query: 85  ------EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV--ENIGK 136
                 +PR            +L+A ++V   +F+  SA          G  V  + +G 
Sbjct: 67  LERVWLQPRTW------VLPAVLSAVVLVQLVSFLWDSAPS------IAGQEVSPKQVGI 114

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +L+  Y   +E++  ILL +++  + L L  R D++  D
Sbjct: 115 LLFGPYLLAVELASMILLGALV--VALHLGRREDLEEGD 151


>gi|150251537|ref|YP_001312269.1| NADH dehydrogenase subunit 6 [Cycas taitungensis]
 gi|221272320|sp|A6H5P5|NU6C_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|149941587|dbj|BAF65011.1| NADH dehydrogenase subunit 6 [Cycas taitungensis]
          Length = 180

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 22/161 (13%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + N IYS  SL    V  + L++LL A+FVA   +++YVGAV V  +F +M+++   
Sbjct: 26  VVLLTNIIYSALSLGPVLVCISLLYILLNADFVAAAQILIYVGAVNVLIVFAVMLMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFSAEGELSRLVFKG------- 128
                +K   F+  + +G     L+VC S F      ++ ++  E+S             
Sbjct: 83  ----NQKYPNFVPLWTVGD-GITLVVCTSLFCSLITIILNTSWSEISMTTKSNQILEQDL 137

Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            NNV+ IG  L T +  P E+   ILL++++GAI +  R  
Sbjct: 138 TNNVQRIGAHLSTDFFLPFELLSIILLVALVGAITIARREE 178


>gi|226327873|ref|ZP_03803391.1| hypothetical protein PROPEN_01754 [Proteus penneri ATCC 35198]
 gi|225203577|gb|EEG85931.1| hypothetical protein PROPEN_01754 [Proteus penneri ATCC 35198]
          Length = 277

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 96/191 (50%), Gaps = 13/191 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  L+ + +  + +F  LGA F   + ++VY GA++
Sbjct: 5   FYIAGLIAILATLRVITHTNPVHALLYLVISLIALSVVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLV 125
           V F+F++MML++   V +  +K      F+IG     L++        S+   GE++  +
Sbjct: 65  VLFVFVVMMLNLGKSVVDQERKW-LQPKFWIGPALLSLMLLVVLIYAISSVTHGEITGEI 123

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
                 + +G  L+  Y   +E++  +LL  +I A  +     RD    D+   +E+   
Sbjct: 124 I---GAKEVGISLFGPYILAVELASVLLLSGLIVAYHI----GRDQSHDDL---VENENA 173

Query: 186 NSIVMVKVKSG 196
               M+ ++ G
Sbjct: 174 GEQKMIPLQHG 184


>gi|156598041|gb|ABU85286.1| NADH-plastoquinone oxidoreductase subunit 6 [Cycas micronesica]
          Length = 180

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 22/161 (13%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + N IYS  SL    V  + L++LL A+FVA   +++YVGAV V  +F +M+++   
Sbjct: 26  VVLLTNIIYSALSLGPVLVCISLLYILLNADFVAAAQILIYVGAVNVLIVFAVMLMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFSAEGELSRLVFKG------- 128
                +K   F+  + +G     L+VC S F      ++ ++  E+S             
Sbjct: 83  ----NQKYPNFVPLWTVGD-GITLVVCTSLFCSLITIILNTSWSEISMTTKSNQILEQDL 137

Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            NNV+ IG  L T +  P E+   ILL++++GAI +  R  
Sbjct: 138 TNNVQRIGAHLSTDFFLPFELLSIILLVALVGAITIARREE 178


>gi|218439483|ref|YP_002377812.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 7424]
 gi|218172211|gb|ACK70944.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 7424]
          Length = 204

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 95/179 (53%), Gaps = 16/179 (8%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI--DIEVA 84
           N +YS F L   F++ AG+++LL A+FVA   +++YVGAV V  LF IM+++   D +V 
Sbjct: 31  NIVYSAFLLGGVFLSIAGIYILLNADFVAAAQILIYVGAVNVLILFAIMLVNKQEDFKVL 90

Query: 85  EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--GELSRLVFKGNNVENIGKVLYTQY 142
            PR+   ++     G++   L       ++ +       S  V +   VE IGK  ++ +
Sbjct: 91  -PRR---WIRKIATGVVCFGLFALLGTMILITPWSLNSTSPAVVENTLVE-IGKHFFSDF 145

Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRRD----IKRQDISKQLESNPDNSIVMVKVKSGK 197
             P E++  +LL++M+GAI++    RRD    ++  + +    + P+    ++ ++SG 
Sbjct: 146 LLPFELASVLLLMAMVGAIII---ARRDFIPEMQPSEPTATALTLPERPRELISLESGT 201


>gi|320354154|ref|YP_004195493.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
 gi|320122656|gb|ADW18202.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
          Length = 158

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 89/163 (54%), Gaps = 10/163 (6%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A++ +  +V  R+P+    S +   ++ AGL+ LL A+ +  + L+VY GA++   +FI
Sbjct: 2   LAVLGAAGLVLFRHPMNGAMSFVVTLISLAGLYALLSAKLIFALQLIVYAGAIMSLIVFI 61

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-ELSRLVFKGNN-- 130
           IM L+I  +   P+++   L  + IG   + +++    F+V   +   +S     GN+  
Sbjct: 62  IMFLNIQPD-DLPKEETKLL--YIIG--GSIIVLPVGLFLVKIVKSIPMSSAALIGNDFG 116

Query: 131 -VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            V+ +G +L+  +  P EI   +LL+S+IGA+VL    R  IK
Sbjct: 117 GVKQVGLLLFKDWLVPFEIVSILLLVSLIGAVVLA-GKRGSIK 158


>gi|292385437|gb|ADE22001.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFWGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|87043016|ref|YP_492630.1| NADH dehydrogenase subunit 6 [Dictyostelium citrinum]
 gi|122000117|sp|Q2LCR2|NU6M_DICCI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|84682116|gb|ABC60381.1| NADH dehydrogenase subunit 6 [Dictyostelium citrinum]
          Length = 226

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 42/200 (21%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
            +F+++   NPIYS+ +LI  +   A + L +  EF+A I ++V VGA+ V FLFI+MM+
Sbjct: 17  CTFVILRSVNPIYSILNLIVIYGCYASILLTVEMEFLACIYILVNVGAIAVLFLFIVMMI 76

Query: 78  DIDI-EVAEPRKKR------GFLGSFFIGILA-----------AELIVCASNFMVFSAEG 119
           +I+I E+ E  KK       GF+G   IGI+             E+I   ++F +F    
Sbjct: 77  NINIVEIQETMKKYNIYMFVGFIG--LIGIMGILITNYQIRIKEEVI---ADFSMFLLNT 131

Query: 120 ELS------------RLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVL--- 163
           E++             L  +  ++  +G  V+Y   +    ++  ILL+ M+G I +   
Sbjct: 132 EITTLQATPSYLDFYELFVETTDLRAMGSNVIYGSQSIWFIMACIILLIGMVGVIYITED 191

Query: 164 MLRHRRDI---KRQDISKQL 180
           ++  +R +   +RQDI+ Q+
Sbjct: 192 LIIEKRKLNARRRQDINSQV 211


>gi|292385429|gb|ADE21995.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
 gi|292385433|gb|ADE21998.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFWGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|283778525|ref|YP_003369280.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula
           staleyi DSM 6068]
 gi|283436978|gb|ADB15420.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula
           staleyi DSM 6068]
          Length = 328

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 45/69 (65%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ + +AI S+   +  ++P+YS      + +  AGLF   GAEF+ + T+VVY GA++
Sbjct: 78  FWVLALIAIGSAVGTIGSQSPVYSAIWFAMSLLGTAGLFFYQGAEFLGVATIVVYAGAIV 137

Query: 68  VFFLFIIMM 76
           V FLF+IM+
Sbjct: 138 VTFLFVIML 146


>gi|58045488|gb|AAW65071.1| NADH dehydrogenase subunit 6 [Lessonia corrugata]
 gi|292385505|gb|ADE22052.1| NADH dehydrogenase subunit 6 [Lessonia corrugata]
 gi|292385509|gb|ADE22055.1| NADH dehydrogenase subunit 6 [Lessonia corrugata]
          Length = 311

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLIFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|255691143|ref|ZP_05414818.1| NADH dehydrogenase I, subunit 6 [Bacteroides finegoldii DSM 17565]
 gi|260623236|gb|EEX46107.1| NADH dehydrogenase I, subunit 6 [Bacteroides finegoldii DSM 17565]
          Length = 170

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 15/175 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI---GILAAELIVCASNFMVFSAE 118
           Y G ++V ++F I++   + + AE  K+  FL   F    G+     I    NFM     
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAERLKRSRFLAGLFTMIAGLAIILFITLKHNFM----- 118

Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRR 169
            + + L  +  N+  IG  L +  +Y Y  P E    +LL  +IG I  M+  +R
Sbjct: 119 -QTANLAPQEINIHTIGHALLSSDKYGYVLPFEAVSILLLACIIGGI--MIARKR 170


>gi|238927263|ref|ZP_04659023.1| NADH dehydrogenase (ubiquinone) subunit J [Selenomonas flueggei
           ATCC 43531]
 gi|304437253|ref|ZP_07397213.1| NADH-quinone oxidoreductase subunit J [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|238884850|gb|EEQ48488.1| NADH dehydrogenase (ubiquinone) subunit J [Selenomonas flueggei
           ATCC 43531]
 gi|304369745|gb|EFM23410.1| NADH-quinone oxidoreductase subunit J [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 164

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S  FY  + + II +  VV   N ++S   L+ +F+  A ++  +GAEF+  + L+VY G
Sbjct: 2   SFIFYFLAAVTIIGALGVVLSPNVVHSALFLVLSFIGVAAIYFYIGAEFLGAVQLMVYSG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE---LIVCASNFMVFSAEGEL 121
           AV V  +  IM+   D  +A+    +        G+LA     LI C        A GE 
Sbjct: 62  AVAVLIVMAIMLTRRD-SMAQSNPSQKLFRRVVTGLLAGSIFFLIGCGIVLAPLPA-GEF 119

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           +         + I +++   Y  P E++  +LL +M+GA++L
Sbjct: 120 A----ASTGADEIAQLMLGTYLVPFEVTAVLLLAAMVGALLL 157


>gi|292385445|gb|ADE22007.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
 gi|292385449|gb|ADE22010.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ F   F++GIL
Sbjct: 81  IERPWSVKKKRF---FYLGIL 98


>gi|164422132|ref|YP_001648746.1| NADH dehydrogenase subunit 6 [Mycosphaerella graminicola]
 gi|155964395|gb|ABU40262.1| NADH dehydrogenase subunit 6 [Mycosphaerella graminicola]
          Length = 225

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 48/71 (67%)

Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
          +F +II   LV+  +NP+ SV  LI  F+N AG  ++LG  F+ +  L+VYVGAV + FL
Sbjct: 24 TFASIICGILVIISKNPVVSVLFLIGLFLNIAGYLMMLGINFIGLSYLLVYVGAVSILFL 83

Query: 72 FIIMMLDIDIE 82
          FI+M++++ I 
Sbjct: 84 FILMLINVRIS 94


>gi|3413802|emb|CAA73989.1| NADH dehydrogenase subunit 6 [Chlorogonium elongatum]
          Length = 165

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 17/161 (10%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           SFL+    N   S+   +  FVNA  + L LG EF+A++ ++VYVGA+ V FLF+IM+L+
Sbjct: 13  SFLISWTGNVFMSLMYAVMLFVNATLVLLSLGFEFLALVNMLVYVGALAVLFLFVIMLLE 72

Query: 79  IDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVF----SAEGELSRLVFKGN---- 129
           I    AE R   RG+    F G+    ++V    F V     S   + +  ++  N    
Sbjct: 73  IP--SAELRAYYRGYSVLTFFGL----IVVLIKQFGVALPFGSPNSQGAPYIYSFNCTSE 126

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           ++ NIG   Y +YA  L ++  +L +++ GA+V  L H R 
Sbjct: 127 SISNIGVAFYIRYADVLILNSLVLTIALFGALV--LAHSRS 165


>gi|57234301|ref|YP_181654.1| proton-translocating NADH-quinone oxidoreductase, J subunit
           [Dehalococcoides ethenogenes 195]
 gi|57224749|gb|AAW39806.1| proton-translocating NADH-quinone oxidoreductase, J subunit
           [Dehalococcoides ethenogenes 195]
          Length = 160

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 20/169 (11%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ +   I S+ LVV V+N  +S   LI  F++ AG+FLLL A+F+A + +++Y+GA+ 
Sbjct: 5   FWIIAITCIASALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIGAIS 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA----SNFMVFSAEGELSR 123
           V  +  IM+            +RG L +     + A  +V A      +M+ S+    S 
Sbjct: 65  VLIILAIML--------TREVQRGNLTNKL--KIPALAVVTALGGIMTYMLISSNWTSSD 114

Query: 124 LVFKGNNVENIGKVLYTQYAYPLE--ISGFILLLSMIGAIVLMLRHRRD 170
                     + ++L+    + L   I+G ILL+++IGAIVL+    RD
Sbjct: 115 APAPSTTTAGLAEMLFGSDGFGLGVLITGVILLVAIIGAIVLV----RD 159


>gi|16761245|ref|NP_456862.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|16765647|ref|NP_461262.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|29141059|ref|NP_804401.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56412783|ref|YP_149858.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62180890|ref|YP_217307.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|161502535|ref|YP_001569647.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. arizonae
          serovar 62:z4,z23:-- str. RSK2980]
 gi|161612952|ref|YP_001586917.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Paratyphi B str. SPB7]
 gi|167994668|ref|ZP_02575759.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229689|ref|ZP_02654747.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237337|ref|ZP_02662395.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168242438|ref|ZP_02667370.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL486]
 gi|168261664|ref|ZP_02683637.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465977|ref|ZP_02699847.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Newport str. SL317]
 gi|168817950|ref|ZP_02829950.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194445907|ref|YP_002041580.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194451507|ref|YP_002046373.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194470957|ref|ZP_03076941.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188]
 gi|194738076|ref|YP_002115389.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|197248229|ref|YP_002147278.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197262113|ref|ZP_03162187.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA23]
 gi|197361717|ref|YP_002141353.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|200387795|ref|ZP_03214407.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Virchow str. SL491]
 gi|204929159|ref|ZP_03220302.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205353435|ref|YP_002227236.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|207857738|ref|YP_002244389.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|213052936|ref|ZP_03345814.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213419032|ref|ZP_03352098.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
 gi|213427018|ref|ZP_03359768.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213580775|ref|ZP_03362601.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|213612296|ref|ZP_03370122.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
 gi|213645877|ref|ZP_03375930.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213865414|ref|ZP_03387533.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|224583194|ref|YP_002636992.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|289829691|ref|ZP_06547232.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-3139]
 gi|25285204|pir||AF0796 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420861|gb|AAL21221.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|16503544|emb|CAD07552.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29136685|gb|AAO68250.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56127040|gb|AAV76546.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62128523|gb|AAX66226.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|160863882|gb|ABX20505.1| hypothetical protein SARI_00579 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161362316|gb|ABX66084.1| hypothetical protein SPAB_00658 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194404570|gb|ACF64792.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Newport str. SL254]
 gi|194409811|gb|ACF70030.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|194457321|gb|EDX46160.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188]
 gi|194713578|gb|ACF92799.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195631291|gb|EDX49851.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Newport str. SL317]
 gi|197093193|emb|CAR58637.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|197211932|gb|ACH49329.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|197240368|gb|EDY22988.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289699|gb|EDY29062.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199604893|gb|EDZ03438.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Virchow str. SL491]
 gi|204321703|gb|EDZ06902.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205273216|emb|CAR38179.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205327485|gb|EDZ14249.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335895|gb|EDZ22659.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Kentucky str. CDC 191]
 gi|205338451|gb|EDZ25215.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL486]
 gi|205345142|gb|EDZ31906.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205349398|gb|EDZ36029.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709541|emb|CAR33886.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|224467721|gb|ACN45551.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|261247526|emb|CBG25353.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267994415|gb|ACY89300.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|301158878|emb|CBW18391.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|312913311|dbj|BAJ37285.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|320086754|emb|CBY96526.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
          serovar Weltevreden str. 2007-60-3289-1]
 gi|321222978|gb|EFX48049.1| NADH-ubiquinone oxidoreductase chain J [Salmonella enterica
          subsp. enterica serovar Typhimurium str. TN061786]
 gi|322617066|gb|EFY13972.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322617628|gb|EFY14527.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322624742|gb|EFY21571.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322630291|gb|EFY27061.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322634472|gb|EFY31205.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|322639182|gb|EFY35874.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322640045|gb|EFY36712.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322645734|gb|EFY42258.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322651509|gb|EFY47884.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322656069|gb|EFY52368.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322659422|gb|EFY55669.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322665882|gb|EFY62065.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322669878|gb|EFY66019.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322673864|gb|EFY69961.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322678622|gb|EFY74678.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322683582|gb|EFY79596.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322687658|gb|EFY83628.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|322715369|gb|EFZ06940.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
 gi|323130651|gb|ADX18081.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323193508|gb|EFZ78713.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323198413|gb|EFZ83515.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323201927|gb|EFZ86989.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323208535|gb|EFZ93474.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323209756|gb|EFZ94680.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323218292|gb|EGA03002.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323222950|gb|EGA07299.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323227386|gb|EGA11551.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323232287|gb|EGA16390.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323235679|gb|EGA19763.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323241160|gb|EGA25196.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323244902|gb|EGA28904.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
 gi|323250021|gb|EGA33915.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251633|gb|EGA35501.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323254944|gb|EGA38735.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323268100|gb|EGA51577.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270807|gb|EGA54245.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326628527|gb|EGE34870.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|332989253|gb|AEF08236.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 184

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  L+ + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88
          V F+F++MML++   E+ + R+
Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86


>gi|331699303|ref|YP_004335542.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953992|gb|AEA27689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Pseudonocardia dioxanivorans CB1190]
          Length = 274

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 92/176 (52%), Gaps = 7/176 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +S+ F++   +A+  +  +V  RN ++S   L+   ++   L+++  A F+  + ++VY 
Sbjct: 20  ESIAFWILGIVALGGALGMVFARNAVHSALFLVMTMLSLGILYIVQQAPFLGFVQIIVYT 79

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GAV++ FLF++M++  D     +EV   R +R       +G+    +   A +    +  
Sbjct: 80  GAVMMLFLFVLMLVGRDSSDSVVEVL--RGQRIAGLLLGLGLALLLVAAVARSLTSVTPA 137

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           G  + L    NN+  +G++++T Y  P E++  +L+ + +GA+VL     +  +++
Sbjct: 138 GLGANLQGSNNNLPGLGRLIFTDYLLPFELTSALLITAALGAMVLAHAQTKSHEKR 193


>gi|167549681|ref|ZP_02343440.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA29]
 gi|198244071|ref|YP_002216390.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|238912401|ref|ZP_04656238.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|197938587|gb|ACH75920.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|205325286|gb|EDZ13125.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA29]
 gi|326624141|gb|EGE30486.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica
          subsp. enterica serovar Dublin str. 3246]
          Length = 184

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  L+ + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88
          V F+F++MML++   E+ + R+
Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86


>gi|397907|emb|CAA48369.1| NADH dehydrogenase I, subunit nuoJ [Escherichia coli]
          Length = 184

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 50/72 (69%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI 79
          V F+F++MML++
Sbjct: 65 VLFVFVVMMLNL 76


>gi|320107668|ref|YP_004183258.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Terriglobus
           saanensis SP1PR4]
 gi|319926189|gb|ADV83264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Terriglobus
           saanensis SP1PR4]
          Length = 168

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ + F +F+ + +  +  ++  R+PI S  SL+   ++ A ++  LGAEF+A   ++VY
Sbjct: 1   MQLVLFLIFAVLCVAGALNLLFQRHPINSALSLVVVMMSLAVIYWTLGAEFLAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+V F+F++M+L+      E  +  G   ++  GI     I+    ++       L 
Sbjct: 61  AGAVMVLFVFVVMLLN----AGEEERTTGSRAAYIAGIPGVAAILALLTYIFMHERAALG 116

Query: 123 RLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                G      +N+  I +VL+T+   P E++  ++L++++GA+VL  + +
Sbjct: 117 YATLGGSLNHTTSNITEISRVLFTELLLPFEVTSILILVAILGAVVLARKEQ 168


>gi|325003715|ref|ZP_08124827.1| NADH:ubiquinone oxidoreductase subunit J [Pseudonocardia sp. P1]
          Length = 284

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 99/190 (52%), Gaps = 13/190 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+  +  +V  R+ +++   L+    + A L+++  A F+  + ++VY 
Sbjct: 19  EAITFWILGPVALAGALGLVFARHAVHAALLLVLTMFSIAVLYIVQSAPFLGFVQIIVYT 78

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GAV++ FLF++M++  D     IEV   R +R     F +G LAA L+   S  +     
Sbjct: 79  GAVMMLFLFVLMLVGKDSKDSVIEVL--RGQRAAALVFGVG-LAALLVAGISRGLTEVTP 135

Query: 119 GELSRLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM----LRHRRDIKR 173
             L      G+ NV  +G++++T Y    E+S  +L+++ +G +VL      +H +  +R
Sbjct: 136 AGLQAGGMGGSANVAGLGRLIFTDYLLAFELSAALLMVAALGGMVLTGSQSSQHAKLSQR 195

Query: 174 QDISKQLESN 183
           + + ++L   
Sbjct: 196 ETVLRRLRGQ 205


>gi|290790821|gb|ADD63078.1| NADH-plastoquinone oxidoreductase subunit 6 [Potamophila
           parviflora]
          Length = 176

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 20/151 (13%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-----------RLVFKG--NNVE 132
             K + F   + IG     L+     F + +   + S           ++V +G  NNV+
Sbjct: 86  WSKDKNF---WTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 143 QIGIHLATDFYLPFELISIILLVSLIGAITM 173


>gi|92115239|ref|YP_575167.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM
          3043]
 gi|91798329|gb|ABE60468.1| NADH dehydrogenase subunit J [Chromohalobacter salexigens DSM
          3043]
          Length = 203

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FYL + +A++++  V+T  +P++++  LI + +  A +F  LGA F   + ++VY GA++
Sbjct: 5  FYLSAVVAVLATLGVITGTHPVHALLYLIVSLIAVALVFFALGAPFAGALEVIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A+  ++R +L
Sbjct: 65 VLFVFVVMMLNLGESTAQ--QERAWL 88


>gi|159106917|ref|YP_001531335.1| NADH-plastoquinone oxidoreductase subunit 6 [Lolium perenne]
 gi|221272331|sp|A8Y9E0|NU6C_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|158934451|emb|CAO86029.1| NADH-plastoquinone oxidoreductase subunit 6 [Lolium perenne]
          Length = 176

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 14/148 (9%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85

Query: 86  PRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNVENIG 135
             K + +  +G  F  I+   ++      +  +++         +++V +G  NNV+ IG
Sbjct: 86  WSKDKNYWTIGDGFTSIVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163
             L T +  P E+   ILL+S+IGAI +
Sbjct: 146 IHLATDFYLPFELISIILLVSLIGAITM 173


>gi|330339456|ref|YP_004376365.1| NADH dehydrogenase subunit 6 [Moniliophthora roreri]
 gi|308912823|gb|ADO51570.1| NADH dehydrogenase subunit 6 [Moniliophthora roreri]
          Length = 207

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 51/80 (63%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M +L   + +F  ++S    +T +NP+ SV  LI  FV +AG  +L+G  F+ +  ++VY
Sbjct: 1  MTTLLINILAFATLLSGIFSITSKNPVISVLFLIGTFVLSAGYLILIGINFIGISYIIVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIE 82
          VGA+ V FLF+IMM++I + 
Sbjct: 61 VGAIAVLFLFVIMMINIKLT 80


>gi|194333681|ref|YP_002015541.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Prosthecochloris aestuarii DSM 271]
 gi|194311499|gb|ACF45894.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Prosthecochloris aestuarii DSM 271]
          Length = 173

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%)

Query: 2  VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
          V  ++ FYLF+ + + S+  VV  +N IYS FSL+F F   A L++ L A+F+A+  +VV
Sbjct: 4  VTYTIIFYLFAAITVFSAAFVVFSKNVIYSAFSLLFTFFGVAALYVYLSADFIAVTQIVV 63

Query: 62 YVGAVIVFFLFIIMMLD 78
          YVG ++V  LF +M  +
Sbjct: 64 YVGGILVLLLFGVMFTN 80


>gi|220907087|ref|YP_002482398.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 7425]
 gi|219863698|gb|ACL44037.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 7425]
          Length = 207

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++   L   M I S+  VV + N +YS F L   F++ AG +LLL A+FV+   +++Y
Sbjct: 7   VQTVSVVLLGLMMIGSALGVVLLNNIVYSAFLLGGVFISMAGFYLLLNADFVSAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           VGAV V  LF IM+++   +   VA    ++G      +G+ A    ++V     +   A
Sbjct: 67  VGAVNVLILFAIMLVNKREDFAPVAGRWIRQGAAALVSLGLFALLGTMVVQTPWPIPSVA 126

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               S LV        IG+  ++ +  P E++  +LL++++GA+VL  R 
Sbjct: 127 STVTSTLVV-------IGEHFFSDFLLPFELASVLLLMALVGAVVLARRE 169


>gi|254033624|ref|YP_003029829.1| NADH dehydrogenase subunit 6 [Dunaliella salina]
 gi|246880710|gb|ACS95023.1| NADH dehydrogenase subunit 6 [Dunaliella salina]
          Length = 157

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 14/163 (8%)

Query: 11  FSFMAIIS--SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +SF+A+++  S LV   +N   S+   I  ++N+  + L LG EF+A+I ++VYVGA+ V
Sbjct: 5   YSFIALLAFLSILVSQTKNVFMSLMYSILLYINSFVVLLSLGFEFLAIINVLVYVGALAV 64

Query: 69  FFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
            FLF+IM+L+I     E R   RG+     +G L+  L    ++  +F+    L      
Sbjct: 65  LFLFVIMLLEIP--STELRAYYRGYSVLAMLGFLSVRLFSVNNSHTIFTFIPTL------ 116

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             ++ N+G   Y  YA  L ++  IL +++ GA+V  L H + 
Sbjct: 117 -ESISNVGYAFYIVYADVLVLNSLILTIALFGALV--LAHNQS 156


>gi|58578583|ref|YP_203329.1| NADH dehydrogenase subunit 6 [Smittium culisetae]
 gi|57339027|gb|AAW49496.1| NADH dehydrogenase subunit 6 [Smittium culisetae]
          Length = 170

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 17/154 (11%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID----IE 82
           NPIYSV SLI  F+    LF+  G  F+ +   ++YVGA+ + F+F IMML+ D    I+
Sbjct: 23  NPIYSVLSLISVFILTGILFIFYGLTFIGLSYFIIYVGAISILFIFAIMMLETDFPSTIK 82

Query: 83  VAEPRKKRGFLGSFFIGILAA------ELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
             + +K    +     GIL        +L    +N  + S    ++ + F  +N++ IG 
Sbjct: 83  YLDLKKDIPLIT----GILCILIYYYLDLSYINNNKNIISG---INNIYFYSSNIKLIGY 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            LYT +   L +  FILLL+MIG I+L L+  ++
Sbjct: 136 CLYTTHCLWLILISFILLLAMIGPIILCLKMNKN 169


>gi|77459833|ref|YP_349340.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf0-1]
 gi|77383836|gb|ABA75349.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf0-1]
          Length = 166

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 5/99 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  S +A++S+  VVT  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5   FYFASGIAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFALGAPFAGVLEVIAYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           V F+F++MML++    A  +++R +L     GI A  +I
Sbjct: 65  VLFVFVVMMLNLG--PASVQQERTWLKP---GIWAGPVI 98


>gi|292385607|gb|ADE22128.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|27464553|gb|AAO16128.1| NADH dehydrogenase subunit 6 [Alcyonium coralloides]
 gi|27464556|gb|AAO16130.1| NADH dehydrogenase subunit 6 [Alcyonium glomeratum]
 gi|27464559|gb|AAO16132.1| NADH dehydrogenase subunit 6 [Alcyonium glomeratum]
          Length = 147

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 7/144 (4%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+E IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185
           +L  +          S+ L S  D
Sbjct: 114 LLAKQPNSPFLYNSHSESLRSRQD 137


>gi|222824429|ref|YP_002576003.1| NADH-quinone oxidoreductase, J subunit [Campylobacter lari RM2100]
 gi|222539650|gb|ACM64751.1| NADH-quinone oxidoreductase, J subunit [Campylobacter lari RM2100]
          Length = 168

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            + +Y++ SL  A V  +G + LL AEF+  I ++VY GA++  + F +M  D  I+V E
Sbjct: 25  TSVLYAISSLAAAMVFLSGFYFLLNAEFIGAIQIIVYSGAILGLYSFAMMFFDASIKVKE 84

Query: 86  PRK-KRGFLGSFFIGILAAEL---IVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141
             K KR F+   F  I +A L   I+   NF + +  GE    V+  ++ + IG  L+T+
Sbjct: 85  NLKGKRVFI---FAVIFSAILLISIIMGYNFGL-NETGE----VYGLDSTQQIGFTLFTK 136

Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           Y    E    +LL+++I AI L    +++IK+ +
Sbjct: 137 YMLAFEFMAILLLIALICAIAL---TQKNIKKDE 167


>gi|85059571|ref|YP_455273.1| NADH dehydrogenase subunit J [Sodalis glossinidius str.
           'morsitans']
 gi|84780091|dbj|BAE74868.1| NADH dehydrogenase I subunit J [Sodalis glossinidius str.
           'morsitans']
          Length = 187

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 27/178 (15%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FYL   +A++++  V+T   P++++  LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   ELAFYLSGLVAVLATLRVITHTQPVHALLYLIISLLAIACVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDI----DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           A++V F+F++MML++    D +     + R ++G   + ++   ++V A           
Sbjct: 62  AIMVLFVFVVMMLNMSVGRDKQECAWLRPRAWIGPALMSLVLLAILVRA----------- 110

Query: 121 LSRLVFKGNN--------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              LV  G++         + +G  L+  Y   +E++  +LL  ++ A  L  R  RD
Sbjct: 111 ---LVGAGDHGIAGDLIAAKTVGIALFGPYVLAVELASMLLLAGLVVAFHLG-RDERD 164


>gi|254032055|ref|YP_001023823.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ2423]
          Length = 277

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 27 NPIYS------VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           PIYS      VF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+   
Sbjct: 16 TPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGG 75

Query: 81 IEVAEPRKKR 90
            +  P  +R
Sbjct: 76 SFLGAPTLER 85



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 12/66 (18%)

Query: 105 LIVCASN----FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
           L+ C  N    F   SA G         +N+E IG VLY  Y Y   +  FILL++MIGA
Sbjct: 215 LVDCGPNYNDSFFAPSAPG--------CSNLEAIGAVLYINYYYAFILVSFILLVAMIGA 266

Query: 161 IVLMLR 166
           IVL L+
Sbjct: 267 IVLGLQ 272


>gi|325104668|ref|YP_004274322.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter
           saltans DSM 12145]
 gi|324973516|gb|ADY52500.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter
           saltans DSM 12145]
          Length = 180

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FYL + +AI+S+  VVT +N + SVF        +AGL++   A+FVA+  +V+Y
Sbjct: 1   MEQILFYLLAGIAILSACYVVTSQNLVRSVFMFFVTLFASAGLYIFALADFVALTQIVIY 60

Query: 63  VGAVIVFFLFIIMM--------LD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           VG V+V  LF+ M+        LD     +++E R     L      IL   +     N 
Sbjct: 61  VGGVLVMLLFVFMLSSKKSLQGLDGLTKQKLSENRLPGAILSLSVFAILIYTIFQIDFNS 120

Query: 113 MVF--SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
           + +  SA    +  +    N+ NIG  L T +  P E+   +L++ +IGA
Sbjct: 121 LSWIQSAIATDNVKLPSDENISNIGINLMTGFLLPFELICVLLMMVLIGA 170


>gi|304413379|ref|ZP_07394852.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Candidatus
          Regiella insecticola LSR1]
 gi|304284222|gb|EFL92615.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Candidatus
          Regiella insecticola LSR1]
          Length = 191

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 59/97 (60%), Gaps = 1/97 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M    FY  + +A++++  V++  NPI+++  L+ + +  A +F  LGA F   + ++VY
Sbjct: 1  MMEFVFYTAAVIAVLATLRVISHHNPIHALLYLVVSLLAIAAVFFSLGAYFAGALEIIVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
           GA++V F+F++MML++   + + ++K     S +IG
Sbjct: 61 AGAIMVLFVFVVMMLNLGDSIQQ-QEKAWLKPSVWIG 96


>gi|292385564|gb|ADE22096.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|292385524|gb|ADE22066.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae]
 gi|292385528|gb|ADE22069.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae]
 gi|292385532|gb|ADE22072.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae]
 gi|292385536|gb|ADE22075.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|157736567|ref|YP_001489250.1| NADH-quinone oxidoreductase, J subunit [Arcobacter butzleri RM4018]
 gi|315635730|ref|ZP_07890993.1| NADH-quinone oxidoreductase subunit J [Arcobacter butzleri JV22]
 gi|157698421|gb|ABV66581.1| NADH-quinone oxidoreductase, J subunit [Arcobacter butzleri RM4018]
 gi|315480027|gb|EFU70697.1| NADH-quinone oxidoreductase subunit J [Arcobacter butzleri JV22]
          Length = 173

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 15/168 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F   +F AI  +  ++  +NP++S   ++   ++ AG+F LL A F+ ++ ++VY
Sbjct: 1   MVDLIFIALAFFAITGAIAMIVYKNPMFSALGVLITMLSVAGMFALLNATFLFLVQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GA++   LFI+M L+I  E    EP K +         I    +I+   N +V  A   
Sbjct: 61  AGAIMTLILFILMFLNIKEEDLPHEPNKYK--------LIALGAVIMIPLNVLVLKAVSN 112

Query: 121 LSRLVF---KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           L +  F   +G+  +++ +G  LY  +    E+   +LL++++G++VL
Sbjct: 113 LPQKDFNIVQGDFGDIKPVGIELYNHWIVAFELISILLLIALVGSVVL 160


>gi|153807447|ref|ZP_01960115.1| hypothetical protein BACCAC_01727 [Bacteroides caccae ATCC 43185]
 gi|149129809|gb|EDM21021.1| hypothetical protein BACCAC_01727 [Bacteroides caccae ATCC 43185]
          Length = 170

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 15/175 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV---CASNFMVFSAE 118
           Y G ++V ++F I++   + + AE  K+  F    F  +  A +I+      NF+     
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFFAGLFTMVAGAAIILFITLKHNFL----- 118

Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRR 169
            + + L  +  N+ +IG  L +  +Y Y  P E    +LL  +IG I  M+  +R
Sbjct: 119 -QTNNLAPQEINIHSIGHALLSSDKYGYILPFEAVSILLLACIIGGI--MIARKR 170


>gi|292385556|gb|ADE22090.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|292385552|gb|ADE22087.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
 gi|292385560|gb|ADE22093.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|292385461|gb|ADE22019.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata]
 gi|292385465|gb|ADE22022.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|292385441|gb|ADE22004.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|330810471|ref|YP_004354933.1| NADH-quinone oxidoreductase subunit J [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|19483811|gb|AAL89572.1| NADH dehydrogenase I subunit J [Pseudomonas fluorescens]
 gi|327378579|gb|AEA69929.1| NADH-quinone oxidoreductase subunit J [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 166

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 5/99 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  S +A++S+  VVT  NP++++  LI + +  A  F  LGA F   + ++ Y GA++
Sbjct: 5   FYFASGIAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFALGAPFAGALEVIAYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           V F+F++MML++    A  +++R +L     GI A  +I
Sbjct: 65  VLFVFVVMMLNLG--PAAVQQERSWLKP---GIWAGPVI 98


>gi|292385516|gb|ADE22060.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis]
 gi|292385520|gb|ADE22063.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|58045486|gb|AAW65070.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|17227721|ref|NP_484269.1| NADH dehydrogenase subunit J [Nostoc sp. PCC 7120]
 gi|28201839|sp|Q8Z075|NU6C_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName:
           Full=NAD(P)H dehydrogenase I, chain 6; AltName:
           Full=NDH-1, chain 6; AltName: Full=NDH-G
 gi|17135203|dbj|BAB77749.1| NADH dehydrogenase subunit 6 [Nostoc sp. PCC 7120]
          Length = 202

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 5/195 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M I ++  VV   + +YS F L   F++ AG++LLL  +FVA   ++VY
Sbjct: 7   VQVVSFGILATMLIGTALGVVLATSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +   P    G +      I++  L    S  MV +     S
Sbjct: 67  VGAVNVLILFAIMLVNKRQDFT-PYPSAG-IRKVLTAIVSVGLFALLST-MVLATPWAYS 123

Query: 123 RLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQL 180
                G+ ++  IG+  ++ +  P E++  +LL++M+GAI+L  R +  ++    + + +
Sbjct: 124 TTPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARREYLPEVTPSGLPQTV 183

Query: 181 ESNPDNSIVMVKVKS 195
            + P+    +V   S
Sbjct: 184 LTLPERPRELVGAGS 198


>gi|319789716|ref|YP_004151349.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio
           ammonificans HB-1]
 gi|317114218|gb|ADU96708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio
           ammonificans HB-1]
          Length = 159

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 7/159 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   F+YLF  +A++ + + VT +N I    +L+  FV   GL+  +GAEF+ ++ ++VY
Sbjct: 1   MAEFFYYLFGVIAVVFAAVAVTAKNVIRGGVALLGTFVALGGLYFSVGAEFIGIVQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA+IV +LF +M LD+     EP +        F+ +    +IV       FS  G + 
Sbjct: 61  GGAIIVLYLFALMTLDLKRMEGEPVRLFSVAAGGFLSLALVAIIVYGG----FSFFGSVH 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
             V   +  + +   L+ ++  P E+   +LL++ IGA+
Sbjct: 117 PAV---STAKGLAGPLFYRFLLPFEVVSVLLLVATIGAV 152


>gi|323952073|gb|EGB47947.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
          coli H252]
          Length = 184

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  LI + +  +G F  LGA F   + ++VY GA++
Sbjct: 5  FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGGFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88
          V F+F++MML++   E+ + R+
Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86


>gi|292385548|gb|ADE22084.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|292385540|gb|ADE22078.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|292385469|gb|ADE22025.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|292385568|gb|ADE22099.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|292385513|gb|ADE22058.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis]
          Length = 286

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|116749372|ref|YP_846059.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Syntrophobacter fumaroxidans MPOB]
 gi|116698436|gb|ABK17624.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
          [Syntrophobacter fumaroxidans MPOB]
          Length = 172

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 52/80 (65%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M + +  FY+ + + + S+ + +T RN +++V  LIF++   A LF L GA  +A   ++
Sbjct: 1  MTLYAFLFYIVAGITVASTAMAITRRNLVHAVIYLIFSYFGTAVLFYLFGAPLLAAFEVI 60

Query: 61 VYVGAVIVFFLFIIMMLDID 80
          +Y GA++V FLFI+MM+ I+
Sbjct: 61 IYAGAIMVLFLFIVMMIRIE 80


>gi|114177239|gb|ABI53790.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ2423]
          Length = 301

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 27  NPIYS------VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
            PIYS      VF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+   
Sbjct: 40  TPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGG 99

Query: 81  IEVAEPRKKR 90
             +  P  +R
Sbjct: 100 SFLGAPTLER 109



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 12/66 (18%)

Query: 105 LIVCASN----FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
           L+ C  N    F   SA G         +N+E IG VLY  Y Y   +  FILL++MIGA
Sbjct: 239 LVDCGPNYNDSFFAPSAPG--------CSNLEAIGAVLYINYYYAFILVSFILLVAMIGA 290

Query: 161 IVLMLR 166
           IVL L+
Sbjct: 291 IVLGLQ 296


>gi|239907424|ref|YP_002954165.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio
           magneticus RS-1]
 gi|239797290|dbj|BAH76279.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio
           magneticus RS-1]
          Length = 172

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 7/174 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    F  +S +A+    L V+  + + ++  L+ +    AGL+LLL A+FVA++ ++
Sbjct: 4   MYLGQTAFAFYSLIALAGGVLAVSAASLVRAMLGLVVSLFGVAGLYLLLLADFVALMQIL 63

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFMVFSAE 118
           +YVGAV V   F IM+     +  E +    RG L   F  +L A ++V      V+   
Sbjct: 64  IYVGAVTVLIFFAIMLTRASADGGEGQGPGLRGSLRGVFGALLPAGILV--PCLAVYGVA 121

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           G  +    K  +   +G  L   Y    E+   +LL +M GA++L    R   K
Sbjct: 122 GFPTP---KNVSPAELGAGLLGPYTMAFELISVVLLAAMAGAVLLAFEKRGAAK 172


>gi|333025110|ref|ZP_08453174.1| putative NADH dehydrogenase subunit J [Streptomyces sp. Tu6071]
 gi|332744962|gb|EGJ75403.1| putative NADH dehydrogenase subunit J [Streptomyces sp. Tu6071]
          Length = 261

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 83/158 (52%), Gaps = 12/158 (7%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           ++S   L    +  A  +L  GA F+ ++ +VVY GAV++ FLF++M++ +    A    
Sbjct: 7   VHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYTGAVMMLFLFVVMLVGV---TAADSL 63

Query: 89  KRGFLGSFFIGIL-----AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143
           K    G  ++ +L      A L+    N  V   +G  +     G NV+ + + ++T Y 
Sbjct: 64  KETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQG--TGRANAGGNVQGLAREIFTTYV 121

Query: 144 YPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDISKQ 179
           +  EI+G +L+ + +GA+VL  R R  R + +++++++
Sbjct: 122 FAFEITGALLITATVGAMVLTHRERTERALNQREMAEK 159


>gi|320105158|ref|YP_004180749.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Isosphaera
           pallida ATCC 43644]
 gi|319752440|gb|ADV64200.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Isosphaera
           pallida ATCC 43644]
          Length = 325

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 50/74 (67%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + ++F  +FS  A+ ++  ++  R+P++S        ++ AGLFLL GA+F+A  T++VY
Sbjct: 66  ISAVFHTVFSLSAVAAAAAMIASRDPVHSALWFAVTVLSTAGLFLLAGAQFLAAGTVIVY 125

Query: 63  VGAVIVFFLFIIMM 76
            GA+IV FLF+IM+
Sbjct: 126 AGAIIVMFLFVIML 139


>gi|238763934|ref|ZP_04624891.1| NADH-quinone oxidoreductase subunit J [Yersinia kristensenii ATCC
          33638]
 gi|238697902|gb|EEP90662.1| NADH-quinone oxidoreductase subunit J [Yersinia kristensenii ATCC
          33638]
          Length = 183

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99
          V F+F++MML++ ++E    +++R +L  S +IG
Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIG 94


>gi|22125533|ref|NP_668956.1| NADH dehydrogenase subunit J [Yersinia pestis KIM 10]
 gi|45442147|ref|NP_993686.1| NADH dehydrogenase subunit J [Yersinia pestis biovar Microtus
          str. 91001]
 gi|51596898|ref|YP_071089.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis IP
          32953]
 gi|108808034|ref|YP_651950.1| NADH dehydrogenase subunit J [Yersinia pestis Antiqua]
 gi|108812304|ref|YP_648071.1| NADH dehydrogenase subunit J [Yersinia pestis Nepal516]
 gi|145599237|ref|YP_001163313.1| NADH dehydrogenase subunit J [Yersinia pestis Pestoides F]
 gi|149365547|ref|ZP_01887582.1| NADH dehydrogenase I chain J [Yersinia pestis CA88-4125]
 gi|153949644|ref|YP_001400440.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis IP
          31758]
 gi|162418552|ref|YP_001606297.1| NADH dehydrogenase subunit J [Yersinia pestis Angola]
 gi|165925425|ref|ZP_02221257.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165937633|ref|ZP_02226195.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166008411|ref|ZP_02229309.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166213848|ref|ZP_02239883.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167399044|ref|ZP_02304568.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167422318|ref|ZP_02314071.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167424390|ref|ZP_02316143.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|170023809|ref|YP_001720314.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis YPIII]
 gi|186895979|ref|YP_001873091.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis PB1/+]
 gi|218929633|ref|YP_002347508.1| NADH dehydrogenase subunit J [Yersinia pestis CO92]
 gi|229838089|ref|ZP_04458248.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia
          pestis biovar Orientalis str. PEXU2]
 gi|229895288|ref|ZP_04510462.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia
          pestis Pestoides A]
 gi|229898649|ref|ZP_04513794.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia
          pestis biovar Orientalis str. India 195]
 gi|229902648|ref|ZP_04517765.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia
          pestis Nepal516]
 gi|270490171|ref|ZP_06207245.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia
          pestis KIM D27]
 gi|294504361|ref|YP_003568423.1| NADH dehydrogenase subunit J [Yersinia pestis Z176003]
 gi|21958433|gb|AAM85207.1|AE013767_4 NADH dehydrogenase I chain J [Yersinia pestis KIM 10]
 gi|45437011|gb|AAS62563.1| NADH dehydrogenase I chain J [Yersinia pestis biovar Microtus
          str. 91001]
 gi|51590180|emb|CAH21817.1| NADH dehydrogenase I chain J [Yersinia pseudotuberculosis IP
          32953]
 gi|108775952|gb|ABG18471.1| NADH dehydrogenase I chain J [Yersinia pestis Nepal516]
 gi|108779947|gb|ABG14005.1| NADH dehydrogenase I chain J [Yersinia pestis Antiqua]
 gi|115348244|emb|CAL21172.1| NADH dehydrogenase I chain J [Yersinia pestis CO92]
 gi|145210933|gb|ABP40340.1| NADH dehydrogenase I chain J [Yersinia pestis Pestoides F]
 gi|149291960|gb|EDM42034.1| NADH dehydrogenase I chain J [Yersinia pestis CA88-4125]
 gi|152961139|gb|ABS48600.1| NADH-quinone oxidoreductase, J subunit [Yersinia
          pseudotuberculosis IP 31758]
 gi|162351367|gb|ABX85315.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis Angola]
 gi|165914383|gb|EDR32998.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165922534|gb|EDR39685.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165992793|gb|EDR45094.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166205022|gb|EDR49502.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166958824|gb|EDR55845.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167051548|gb|EDR62956.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167056272|gb|EDR66041.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169750343|gb|ACA67861.1| NADH dehydrogenase (quinone) [Yersinia pseudotuberculosis YPIII]
 gi|186699005|gb|ACC89634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia
          pseudotuberculosis PB1/+]
 gi|229680095|gb|EEO76194.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia
          pestis Nepal516]
 gi|229688197|gb|EEO80268.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia
          pestis biovar Orientalis str. India 195]
 gi|229694455|gb|EEO84502.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia
          pestis biovar Orientalis str. PEXU2]
 gi|229701774|gb|EEO89799.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia
          pestis Pestoides A]
 gi|262362650|gb|ACY59371.1| NADH dehydrogenase subunit J [Yersinia pestis D106004]
 gi|262366279|gb|ACY62836.1| NADH dehydrogenase subunit J [Yersinia pestis D182038]
 gi|270338675|gb|EFA49452.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia
          pestis KIM D27]
 gi|294354820|gb|ADE65161.1| NADH dehydrogenase subunit J [Yersinia pestis Z176003]
 gi|320014615|gb|ADV98186.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia
          pestis biovar Medievalis str. Harbin 35]
          Length = 181

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99
          V F+F++MML++ ++E    +++R +L  S +IG
Sbjct: 65 VLFVFVVMMLNLGNVE----QQERAWLKPSMWIG 94


>gi|290790888|gb|ADD63144.1| NADH-plastoquinone oxidoreductase subunit 6 [Microlaena stipoides]
          Length = 176

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++LL + FVA+  L++YVGA+ +  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINILIIFAVMF----VNGSE 85

Query: 86  PRKKRGF--LGSFFIGILAAELIVCAS-NFMVFSAEGELS-----------RLVFKG--N 129
             K + F  +G  F       L+VC +  F + +   + S           ++V +G  N
Sbjct: 86  WSKDKNFWTIGDGF------TLLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLIN 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           NV+ IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 140 NVQQIGIHLATDFYLPFELISIILLVSLIGAITM 173


>gi|289649283|ref|ZP_06480626.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. aesculi
          str. 2250]
          Length = 169

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFTSGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A  +++R +L
Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88


>gi|332162381|ref|YP_004298958.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325666611|gb|ADZ43255.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330860326|emb|CBX70639.1| NADH-quinone oxidoreductase subunit J [Yersinia enterocolitica
          W22703]
          Length = 181

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99
          V F+F++MML++ ++E    +++R +L  S +IG
Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIG 94


>gi|70731264|ref|YP_261005.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf-5]
 gi|68345563|gb|AAY93169.1| NADH-quinone oxidoreductase, J subunit [Pseudomonas fluorescens
          Pf-5]
          Length = 166

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 50/81 (61%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  VVT  NP++++  LI + +  A  F  LGA F   + ++ Y GA++
Sbjct: 5  FYFASGVAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFSLGAPFAGALEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRK 88
          V F+F++MML++    A+  +
Sbjct: 65 VLFVFVVMMLNLGPAAAQQER 85


>gi|123441684|ref|YP_001005668.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122088645|emb|CAL11442.1| NADH dehydrogenase I chain J [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|318606460|emb|CBY27958.1| NADH-ubiquinone oxidoreductase chain J [Yersinia enterocolitica
          subsp. palearctica Y11]
          Length = 181

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99
          V F+F++MML++ ++E    +++R +L  S +IG
Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIG 94


>gi|269139722|ref|YP_003296423.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Edwardsiella
           tarda EIB202]
 gi|267985383|gb|ACY85212.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Edwardsiella
           tarda EIB202]
 gi|304559589|gb|ADM42253.1| NADH-ubiquinone oxidoreductase chain J [Edwardsiella tarda FL6-60]
          Length = 190

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 16/183 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  + +A++++  V+T  NP++++  LI + +  A +F  LGA F   + ++VY GA++
Sbjct: 5   FYAAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           V F+F++MML++   V E  ++R +L    +IG     LI+ A   +V  A   L   V 
Sbjct: 65  VLFVFVVMMLNLGHSVVE--QERAWLKPGVWIGPALLSLILLA---VVLYAISTLQGGVI 119

Query: 127 KGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
            G  V+   +G  L+  Y   +E+   +LL  ++ A          I R+    ++ SN 
Sbjct: 120 DGRAVDAKAVGIALFGPYVLAVELVSMLLLAGLVVAF--------HIGREHHPGEVLSNK 171

Query: 185 DNS 187
             S
Sbjct: 172 AAS 174


>gi|14017626|ref|NP_114311.1| NADH dehydrogenase subunit 6 [Triticum aestivum]
 gi|118430356|ref|YP_874790.1| NADH-plastoquinone oxidoreductase subunit 6 [Agrostis stolonifera]
 gi|23821900|sp|Q95H44|NU6C_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272307|sp|A1EA62|NU6C_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|13928259|dbj|BAB47088.1| NADH dehydrogenase ND6 [Triticum aestivum]
 gi|118201265|gb|ABK79634.1| NADH-plastoquinone oxidoreductase subunit 6 [Agrostis stolonifera]
          Length = 176

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 14/148 (9%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85

Query: 86  PRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNVENIG 135
             K + +  +G  F  ++   ++      +  +++         +++V +G  NNV+ IG
Sbjct: 86  WSKDKNYWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163
             L T +  P E+   ILL+S+IGAI +
Sbjct: 146 IHLATDFYLPFELISIILLVSLIGAITM 173


>gi|284042624|ref|YP_003392964.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Conexibacter
           woesei DSM 14684]
 gi|283946845|gb|ADB49589.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Conexibacter
           woesei DSM 14684]
          Length = 244

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 95/172 (55%), Gaps = 3/172 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F++ +  A+  +  VV +RNP YSV +L+   ++ + LFLLL AEF+A   ++VY
Sbjct: 1   MAEVIFFIAAIGALSGAIGVVALRNPFYSVLALVGHLLSLSALFLLLRAEFLAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV V ++F++  + D  + +     +   +   F+G+L  EL +      + + +GE 
Sbjct: 61  AGAVTVLYVFVVSYVGDGTVPLGPGGARLRNVAMLFVGMLFVELCIALLGSGLKAIDGEG 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           +  V      E+IG+ L T++  P E++  +LL++ +GA+  ML  RR   R
Sbjct: 121 APYVPGFGTPESIGEALLTKFLLPFELASLLLLVAAVGAV--MLARRRSGGR 170


>gi|237800534|ref|ZP_04588995.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. oryzae str. 1_6]
 gi|331023394|gb|EGI03451.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. oryzae str. 1_6]
          Length = 169

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A  +++R +L
Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88


>gi|296140860|ref|YP_003648103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tsukamurella
           paurometabola DSM 20162]
 gi|296028994|gb|ADG79764.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tsukamurella
           paurometabola DSM 20162]
          Length = 256

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 86/173 (49%), Gaps = 7/173 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ +  A++ +  VV     +YS   L    +  A  +L  GA F+ ++ +V
Sbjct: 1   MTGEEVAFWVVAVPAVLFALGVVVASKAVYSALCLAATMILLAVAYLSQGAMFLGVVQVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VY GAV++ FLF++M++ +D     +E     +    +     G+L   L+  A   +  
Sbjct: 61  VYTGAVMMLFLFVVMLVGVDSSDSLVETLRGHRVAAAVAGTGFGLLLVTLLARAVLPVPR 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             +G   +  +  N+VE +   ++ +Y +  E++  +L+ + +GA++L  R +
Sbjct: 121 PVDGVAPQ--YPPNSVEALADTVFVRYVWAFELTAALLITATLGAMILAHREK 171


>gi|148656358|ref|YP_001276563.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus
           sp. RS-1]
 gi|148568468|gb|ABQ90613.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus
           sp. RS-1]
          Length = 169

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 8/142 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N I+S   L+  FV  + L++LL A F+ +I L+VY GA+IV FLF++M+L    E AE 
Sbjct: 25  NAIHSAIFLLINFVAISVLYVLLYAPFLFVIQLIVYAGAIIVLFLFVVMLL--GAERAED 82

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVF---SAEGELSRLVFKGNNVENIGKVLYTQYA 143
            ++R F     +G+  A +++    ++     SA   ++   F     E I + L+T Y 
Sbjct: 83  TRER-FAWQRPLGVSLAAILLGLLGYLALRNPSAGATVADQHFAAP--ERIAEALFTTYL 139

Query: 144 YPLEISGFILLLSMIGAIVLML 165
            P EI+ F+LL +++G +VL +
Sbjct: 140 LPFEITAFLLLAAIVGVVVLHM 161


>gi|330889652|gb|EGH22313.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. mori str. 301020]
          Length = 169

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A  +++R +L
Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88


>gi|289625434|ref|ZP_06458388.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. aesculi
          str. NCPPB3681]
 gi|330866830|gb|EGH01539.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. aesculi str. 0893_23]
          Length = 169

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A  +++R +L
Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88


>gi|29349470|ref|NP_812973.1| NADH dehydrogenase I subunit J [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570160|ref|ZP_04847569.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6]
 gi|29341379|gb|AAO79167.1| NADH dehydrogenase I, chain J [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840541|gb|EES68623.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6]
          Length = 170

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 15/175 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI---GILAAELIVCASNFMVFSAE 118
           Y G ++V ++F I++   + + AE  K+  FL   F    G+     I    NF+     
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFLAGLFTMVAGLAIILFITLKHNFL----- 118

Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRR 169
            + + LV    N+  IG  L +  +Y Y  P E    +LL  +IG I  M+  +R
Sbjct: 119 -QTTNLVPLEINIHTIGNALLSSDKYGYILPFEAISILLLACIIGGI--MIARKR 170


>gi|238751240|ref|ZP_04612734.1| NADH-quinone oxidoreductase subunit J [Yersinia rohdei ATCC
          43380]
 gi|238710514|gb|EEQ02738.1| NADH-quinone oxidoreductase subunit J [Yersinia rohdei ATCC
          43380]
          Length = 181

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 58/92 (63%), Gaps = 2/92 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
          V F+F++MML++     E +++     S +IG
Sbjct: 65 VLFVFVVMMLNLG--KVEEQEREWLKPSVWIG 94


>gi|298487556|ref|ZP_07005598.1| NADH-ubiquinone oxidoreductase chain J [Pseudomonas savastanoi
          pv. savastanoi NCPPB 3335]
 gi|298157940|gb|EFH99018.1| NADH-ubiquinone oxidoreductase chain J [Pseudomonas savastanoi
          pv. savastanoi NCPPB 3335]
          Length = 169

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A  +++R +L
Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88


>gi|238794599|ref|ZP_04638206.1| NADH-quinone oxidoreductase subunit J [Yersinia intermedia ATCC
          29909]
 gi|238726085|gb|EEQ17632.1| NADH-quinone oxidoreductase subunit J [Yersinia intermedia ATCC
          29909]
          Length = 181

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFL-GSFFIG 99
          V F+F++MML++ ++E    +++R +L  S +IG
Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIG 94


>gi|238788646|ref|ZP_04632438.1| NADH-quinone oxidoreductase subunit J [Yersinia frederiksenii
          ATCC 33641]
 gi|238723241|gb|EEQ14889.1| NADH-quinone oxidoreductase subunit J [Yersinia frederiksenii
          ATCC 33641]
          Length = 181

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99
          V F+F++MML++ ++E    +++R +L  S +IG
Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIG 94


>gi|58045434|gb|AAW65044.1| NADH dehydrogenase subunit 6 [Chorda filum]
          Length = 311

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           + L +F+ +     V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ 
Sbjct: 7   YILITFLGVCLGIKVTSTQNPVYSGLYLVLLFFLGSAIAFLLGLEFMALLFLLVYAGAIA 66

Query: 68  VFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAA 103
           V  LF++MMLD+  IE     KK+  L  + +G+  A
Sbjct: 67  VLVLFVVMMLDVKAIEKPWSAKKKRLL--YLVGVFFA 101


>gi|298384969|ref|ZP_06994528.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 1_1_14]
 gi|298262113|gb|EFI04978.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 1_1_14]
          Length = 170

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 15/175 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI---GILAAELIVCASNFMVFSAE 118
           Y G ++V ++F I++   + + AE  K+  FL   F    G+     I    NF+     
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFLAGLFTMIAGLAIILFITLKHNFL----- 118

Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRR 169
            + + LV    N+  IG  L +  +Y Y  P E    +LL  +IG I  M+  +R
Sbjct: 119 -QTTNLVPLEINIHTIGNALLSSDKYGYILPFEAISILLLACIIGGI--MIARKR 170


>gi|328952914|ref|YP_004370248.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453238|gb|AEB09067.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 173

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 18/173 (10%)

Query: 11  FSFMAIIS-----SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            SF+ +++     + + V  RN  ++V  L  +    AG+F+ L + F+AM+ +++YVGA
Sbjct: 10  LSFLGVLAVTFGGAIIAVGARNIFHNVLGLALSLFGVAGIFVYLNSPFLAMMEILIYVGA 69

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF---IGILAAELIVCASNFMVFSAEGELS 122
           + +   F IM+ +       PRK     G+     +  L   L++  ++++  S  G+  
Sbjct: 70  ICIAICFAIMLSEPLYLPKPPRKPLKIAGAGLGAGVVFLMLSLLIKKTDWIPASVRGD-- 127

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                  ++  IG  L T+YA   E+   +LL++M+GAIV     R    R D
Sbjct: 128 -----DWSIATIGHYLLTRYALIFEVISLVLLVAMLGAIV---NARNGRNRAD 172


>gi|66046434|ref|YP_236275.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae
          B728a]
 gi|289679208|ref|ZP_06500098.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae
          FF5]
 gi|302185031|ref|ZP_07261704.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae
          642]
 gi|63257141|gb|AAY38237.1| NADH dehydrogenase (quinone) [Pseudomonas syringae pv. syringae
          B728a]
 gi|330900635|gb|EGH32054.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. japonica str. M301072PT]
 gi|330954555|gb|EGH54815.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          Cit 7]
 gi|330972915|gb|EGH72981.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. aceris str. M302273PT]
 gi|330981362|gb|EGH79465.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. aptata str. DSM 50252]
          Length = 169

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A  +++R +L
Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88


>gi|330850678|ref|YP_004376559.1| NADH-plastoquinone oxidoreductase subunit 6 [Ptilidium
           pulcherrimum]
 gi|302024807|gb|ADK89653.1| NADH-plastoquinone oxidoreductase subunit 6 [Ptilidium
           pulcherrimum]
          Length = 206

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 38/194 (19%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + + +YS F L F F   A L+LLL ++FVA   +++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVLLNDIVYSAFLLGFVFACVALLYLLLDSDFVAAAQVLIYVGAINVLIVFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFI------GILAAELIVCASNFMVFS------------- 116
           +++ +  +            FF+      GI +A   +C S F++ +             
Sbjct: 80  LINKNNPII-----------FFLVWTIGDGITSA---ICTSIFLLLNNTISNTSWSKIYL 125

Query: 117 -AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            A+   +  +    N+  IG  L T++  P E+   ILL+++IGAI L     R  +  +
Sbjct: 126 VAQLNKNTELITTENIRRIGLELLTKFLIPFELMSIILLIALIGAITL----ARGEQVIN 181

Query: 176 ISKQLESNPDNSIV 189
           + +++  N +NSI+
Sbjct: 182 LEEEVLRNKNNSII 195


>gi|256593092|gb|ACV03501.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D3]
          Length = 67

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63 VGAVIVFF 70
          VGA+ + F
Sbjct: 60 VGAIAILF 67


>gi|254032034|ref|YP_654089.2| NADH dehydrogenase subunit 6 [Trichoplax adhaerens]
          Length = 284

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 6/57 (10%)

Query: 28 PIYS------VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
          PIYS      VF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ 
Sbjct: 17 PIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIP 73



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 28/42 (66%)

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           G+N+E IG VLY  Y Y   +  FILL++MIGAIVL L+   
Sbjct: 241 GSNLEAIGSVLYINYYYVFILVSFILLVAMIGAIVLGLQSSN 282


>gi|28870537|ref|NP_793156.1| NADH dehydrogenase I subunit J [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|213970027|ref|ZP_03398159.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato
          T1]
 gi|301381382|ref|ZP_07229800.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato
          Max13]
 gi|302062153|ref|ZP_07253694.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato
          K40]
 gi|302130463|ref|ZP_07256453.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|28853785|gb|AAO56851.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|213925131|gb|EEB58694.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato
          T1]
 gi|330875765|gb|EGH09914.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. morsprunorum str. M302280PT]
 gi|330965584|gb|EGH65844.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. actinidiae str. M302091]
 gi|331017279|gb|EGH97335.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. lachrymans str. M302278PT]
          Length = 169

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A  +++R +L
Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88


>gi|296268313|ref|YP_003650945.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Thermobispora bispora DSM 43833]
 gi|296091100|gb|ADG87052.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobispora
           bispora DSM 43833]
          Length = 176

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 21/181 (11%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
             + F L   +A+ S  LVVT +  +++   L+  F   AG +L+L AEFVA + +++YV
Sbjct: 11  PEIVFLLLGLVALGSGVLVVTTKRLVHAALWLVVCFGALAGCYLVLTAEFVAWVQVLIYV 70

Query: 64  GAVIVFFLFIIMMLDIDIEVAEP-----RKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           GAV+V  LF IM+       +E      R     +     G+L   +I   S F    A 
Sbjct: 71  GAVVVLLLFGIMLTRAPTGRSEELDSGNRWAAALVALATAGVLVTVVI---SGFRDAYAP 127

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            E  R      +   IG  ++  +  P E+   +LL ++IGAIV        I R DI+ 
Sbjct: 128 LEPGR-----GSAGEIGAGIFRTWVLPFEVLSLLLLAALIGAIV--------ISRTDITG 174

Query: 179 Q 179
           +
Sbjct: 175 R 175


>gi|71737794|ref|YP_275287.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71558347|gb|AAZ37558.1| NADH-quinone oxidoreductase, J subunit [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|320323796|gb|EFW79880.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. glycinea
          str. B076]
 gi|320327935|gb|EFW83940.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. glycinea
          str. race 4]
 gi|330881175|gb|EGH15324.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. glycinea str. race 4]
          Length = 169

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A  +++R +L
Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88


>gi|283852193|ref|ZP_06369466.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           sp. FW1012B]
 gi|283572419|gb|EFC20406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           sp. FW1012B]
          Length = 171

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 9/171 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    F  ++ + +    L V  +  + ++  L+ +    AGL+LLL A+FVA++ ++
Sbjct: 4   MYLGQFAFAFYTLIILAGGLLAVGAQGLVRAMLGLVVSLFGVAGLYLLLLADFVALMQIL 63

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSA- 117
           +YVGAV +   F IM+     +  E        G  F GIL A    +V A   + F A 
Sbjct: 64  IYVGAVTILMFFAIMLTRASADGGEAE------GPGFAGILRAIPAFLVPAGILVPFLAV 117

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            G       K  + + +G  L   Y  P E+   +LL +M GA++L    R
Sbjct: 118 HGTPGFATPKNVSPDQLGAGLLGPYTLPFELISVVLLAAMAGAVLLAFEKR 168


>gi|94962399|gb|ABF48517.1| NADH dehydrogenase subunit 6 [Trichoplax adhaerens]
          Length = 308

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 6/58 (10%)

Query: 27 NPIYS------VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           PIYS      VF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ 
Sbjct: 40 TPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIP 97



 Score = 39.7 bits (91), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 28/42 (66%)

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           G+N+E IG VLY  Y Y   +  FILL++MIGAIVL L+   
Sbjct: 265 GSNLEAIGSVLYINYYYVFILVSFILLVAMIGAIVLGLQSSN 306


>gi|257485448|ref|ZP_05639489.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tabaci
          ATCC 11528]
 gi|330987950|gb|EGH86053.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. lachrymans str. M301315]
 gi|331010719|gb|EGH90775.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. tabaci ATCC 11528]
          Length = 169

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A  +++R +L
Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88


>gi|56791578|gb|AAW30327.1| NADH dehydrogenase subunit 6 [Agave attenuata]
          Length = 158

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 11/140 (7%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI+ VVY+GA+ V FLF++
Sbjct: 11  ALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVYIGAIAVSFLFVV 70

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSRLVFKG 128
           MM +I I        R    S  IG IL  E+     N              L   V+ G
Sbjct: 71  MMFNIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYTVYAG 130

Query: 129 -----NNVENIGKVLYTQYA 143
                 N+E +G +LYT Y+
Sbjct: 131 KVRSWTNLETLGNLLYTYYS 150


>gi|238753746|ref|ZP_04615107.1| NADH-quinone oxidoreductase subunit J [Yersinia ruckeri ATCC 29473]
 gi|238707982|gb|EEQ00339.1| NADH-quinone oxidoreductase subunit J [Yersinia ruckeri ATCC 29473]
          Length = 181

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5   FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           V F+F++MML++  +V E  ++R +L  S +IG     L++ +      S+   L+    
Sbjct: 65  VLFVFVVMMLNLG-KVDE--QERAWLKPSVWIGPALLALVLLSVLIYAISS---LTDQGI 118

Query: 127 KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            G   + + +G  L+  Y   +E++  +LL  ++ A  +   H+
Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHK 162


>gi|330503263|ref|YP_004380132.1| NADH dehydrogenase subunit J [Pseudomonas mendocina NK-01]
 gi|328917549|gb|AEB58380.1| NADH dehydrogenase subunit J [Pseudomonas mendocina NK-01]
          Length = 169

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  + +A+ S+  VVT  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYFAAGVAVASTVGVVTNTNPVHALLYLIVSLLAVSMVFFALGAPFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
          V F+F++MML++    A+ +++R      ++G
Sbjct: 65 VLFVFVVMMLNLGPAAAD-QERRWLTPGIWVG 95


>gi|319738248|emb|CBJ18024.1| NADH dehydrogenase subunit 6 [Ectocarpus siliculosus]
          Length = 305

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F + S +  I    V + +NP+YS   L+  F   +G+  LLG EF+A++ L+VY GA+ 
Sbjct: 7  FIIISCLGAILGVKVTSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIA 66

Query: 68 VFFLFIIMMLDID-IEVAEPRKKR 90
          V  LF++MMLD+  IE     KK+
Sbjct: 67 VLVLFVVMMLDVKAIENPWSAKKK 90



 Score = 34.7 bits (78), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVK 194
           +LY+ YA  L I+G ILL++M+GAI L L+       + + +QL     N++  +K K
Sbjct: 236 LLYSTYAILLIIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAVFSIKEK 290


>gi|146221440|gb|ABQ11840.1| NADH dehydrogenase subunit 6 [Iphiteon panicea]
          Length = 176

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 17/161 (10%)

Query: 30  YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89
           YS   LI  F+N + LF+LL  EF+A++ ++VY GA+ + FLF IMML++        K+
Sbjct: 24  YSAVWLILTFINISLLFILLEIEFIAILLIIVYAGAIAILFLFAIMMLNLH------TKE 77

Query: 90  RGFLGSFFIGILAAELIVCASNFM------VFSAEGELSRLVFKGNNVENIGKVLYTQYA 143
           +    +  + I A  +I      +      +++   ++  L    +N E I  +LY+ Y 
Sbjct: 78  QTSDSTHLLPINATIIISVIIIGINSSSHKLYNTTPQIKTL----DNTETISSLLYSNYT 133

Query: 144 YPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQLESN 183
               IS  ILL+SMI  IV++ + +   IK+Q   +Q ++N
Sbjct: 134 PWFLISSIILLISMIATIVIIQKEQINSIKQQLFKQQNKTN 174


>gi|15597841|ref|NP_251335.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PAO1]
 gi|107102165|ref|ZP_01366083.1| hypothetical protein PaerPA_01003215 [Pseudomonas aeruginosa
          PACS2]
 gi|116050632|ref|YP_790549.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152984819|ref|YP_001347925.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PA7]
 gi|218891194|ref|YP_002440060.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa LESB58]
 gi|254235627|ref|ZP_04928950.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa C3719]
 gi|254241075|ref|ZP_04934397.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 2192]
 gi|313107684|ref|ZP_07793866.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 39016]
 gi|81622298|sp|Q9I0J3|NUOJ_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
          Full=NADH dehydrogenase I subunit J; AltName:
          Full=NDH-1 subunit J
 gi|9948714|gb|AAG06033.1|AE004693_4 NADH dehydrogenase I chain J [Pseudomonas aeruginosa PAO1]
 gi|115585853|gb|ABJ11868.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167558|gb|EAZ53069.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa C3719]
 gi|126194453|gb|EAZ58516.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 2192]
 gi|150959977|gb|ABR82002.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa PA7]
 gi|218771419|emb|CAW27186.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa LESB58]
 gi|310880368|gb|EFQ38962.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 39016]
          Length = 166

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 52/82 (63%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  + +A++++  V+T  NP++++  LI + +  +  F  LGA F   + ++VY GA++
Sbjct: 5  FYFAAGVAVLATLRVITNSNPVHALLYLIISLLAISMTFFSLGAPFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++   V E  +K
Sbjct: 65 VLFVFVVMMLNLGPAVVEQERK 86


>gi|300723698|ref|YP_003713005.1| NADH dehydrogenase I subunit J [Xenorhabdus nematophila ATCC 19061]
 gi|297630222|emb|CBJ90873.1| NADH dehydrogenase I chain J [Xenorhabdus nematophila ATCC 19061]
          Length = 175

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 59/98 (60%), Gaps = 4/98 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5   FYVAGLVAILATLRVITHTNPVHALLYLIISLLALSVVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRK----KRGFLGSFFIGIL 101
           V F+F++MML++   V E  +     R ++G   + I+
Sbjct: 65  VLFVFVVMMLNLGKSVVEQERLWLQPRAWIGPSILSIV 102


>gi|296388894|ref|ZP_06878369.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PAb1]
          Length = 166

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 52/82 (63%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  + +A++++  V+T  NP++++  LI + +  +  F  LGA F   + ++VY GA++
Sbjct: 5  FYFAAGVAVLATLRVITNSNPVHALLYLIISLLAISMTFFSLGAPFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++   V E  +K
Sbjct: 65 VLFVFVVMMLNLGPAVVEQERK 86


>gi|11465920|ref|NP_046137.1| NADH dehydrogenase subunit 6 [Chlamydomonas moewusii]
 gi|2865266|gb|AAC39349.1| NADH dehydrogenase subunit 6 [Chlamydomonas moewusii]
          Length = 171

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 19/151 (12%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           R+P  S+   +  F+NA+ + L+LG EF+A++ ++VYVGA+ V FLF+IM+L  +I  AE
Sbjct: 23  RSPFMSLMFAVMLFINASIVLLMLGFEFLALVNMLVYVGALAVLFLFVIMLL--EIPSAE 80

Query: 86  PRK-KRGFLGSFFIGILAAELIVCASNFM------------VFSAEGELSRLVFKGNNVE 132
            R   RG+      GIL        +               + S  G +  L     ++ 
Sbjct: 81  LRAYHRGWSTLALFGILGCWRYASVAPITKTGALMDTFKSPIMSVAGFVPTL----ESIN 136

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            +G   Y +YA  L I+  +L +++ GA+VL
Sbjct: 137 YVGHAFYIRYADVLIINSLVLTVALFGALVL 167


>gi|330958151|gb|EGH58411.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. maculicola str. ES4326]
          Length = 169

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAVVSTLRVITNTNPLHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++    A  +++R +L
Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88


>gi|194033199|ref|YP_002000538.1| NADH dehydrogenase subunit 6 [Brachypodium distachyon]
 gi|221272311|sp|B3TNA2|NU6C_BRADI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|193075607|gb|ACF08690.1| NADH dehydrogenase subunit 6 [Brachypodium distachyon]
          Length = 176

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 20/151 (13%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-----------RLVFKG--NNVE 132
             K +    S+ IG     L+     F + +   + S           ++V +G  NNV+
Sbjct: 86  WSKDK---NSWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 143 QIGIHLATDFYLPFELISIILLVSLIGAITM 173


>gi|57923576|gb|AAW59532.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana]
 gi|57923580|gb|AAW59535.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana]
 gi|58045456|gb|AAW65055.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana]
          Length = 311

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+ FL
Sbjct: 81 IESPWSAKKKRFL 93



 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N++  VK KS
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAVFSVKEKS 297


>gi|319412295|gb|ADV41832.1| NADH dehydrogenase subunit 6 [Bigelowiella natans]
          Length = 193

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 13/190 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L +   +IS+ LV+  RN +Y++  L+  F  +A L + +G EF+  + +VVYVGA+ + 
Sbjct: 3   LLAIFTLISATLVLISRNIVYALAFLVTTFFLSAVLLINIGLEFLGYVLIVVYVGAIAIL 62

Query: 70  FLFIIMMLDI---DIEVAEPRKKRGFLG-----SFFIGILAAELIVCA---SNFMVFSAE 118
           FLF++M LDI   ++  ++ R   G+       +FF  +L +     A   + F  FS  
Sbjct: 63  FLFVVMTLDITNEELASSQVRNSGGYTSHTVALAFFFFVLWSIYSTAAPIDALFEKFSFI 122

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +    V        + + LYT     L ++G +LL++M+GA++L L   R    QD  K
Sbjct: 123 QDPWVPVLHSGGAGAVAQTLYTHNFLYLFLAGLLLLVAMVGAVLLALPPVR--LSQDSYK 180

Query: 179 QLESNPDNSI 188
           Q    P  ++
Sbjct: 181 QAHRQPAKAV 190


>gi|220904924|ref|YP_002480236.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Desulfovibrio desulfuricans subsp. desulfuricans str.
          ATCC 27774]
 gi|219869223|gb|ACL49558.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Desulfovibrio desulfuricans subsp. desulfuricans str.
          ATCC 27774]
          Length = 214

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 53/82 (64%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +FF   + + ++   L + +RNP++ V  ++  FV+ A ++L L AEF+A + +VVY G
Sbjct: 4  EIFFLYCAVVIVVCGILSIRLRNPVHCVLLVLLLFVHMAAVYLTLQAEFLAAVQIVVYAG 63

Query: 65 AVIVFFLFIIMMLDIDIEVAEP 86
          AV+V +LF++ ++++  E+  P
Sbjct: 64 AVLVMYLFVVFLVNLKREMRMP 85


>gi|269128577|ref|YP_003301947.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Thermomonospora curvata DSM 43183]
 gi|268313535|gb|ACY99909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Thermomonospora curvata DSM 43183]
          Length = 184

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M    + F L   +A+ S+ LVVT R  +++   L+ AF   AG +L+L AEFVA   ++
Sbjct: 1  MTAAEVVFALLGVVAVGSAVLVVTTRQLVHAALWLVVAFGALAGCYLVLTAEFVAWTQVL 60

Query: 61 VYVGAVIVFFLFIIMM 76
          +YVGAV+V  LF IM+
Sbjct: 61 IYVGAVVVLLLFGIML 76


>gi|292385579|gb|ADE22107.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 7/101 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           IE     KK+ FL   ++GIL   L VC    +++S E +L
Sbjct: 81  IERPWSVKKKRFL---YLGIL---LFVCFLIAVIYSKELQL 115


>gi|118430440|ref|YP_874705.1| NADH-plastoquinone oxidoreductase subunit 6 [Hordeum vulgare subsp.
           vulgare]
 gi|126302578|sp|O98693|NU6C_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|118201094|gb|ABK79465.1| NADH-plastoquinone oxidoreductase subunit 6 [Hordeum vulgare subsp.
           vulgare]
          Length = 176

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 14/148 (9%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85

Query: 86  PRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNVENIG 135
             K + +  +G  F  ++    +      +  +++         +++V +G  NNV+ IG
Sbjct: 86  WSKDKNYWTIGDGFTSLVCITFVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163
             L T +  P E+   ILL+S+IGAI +
Sbjct: 146 IHLATDFYLPFELISIILLVSLIGAITM 173


>gi|156742069|ref|YP_001432198.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus
           castenholzii DSM 13941]
 gi|156233397|gb|ABU58180.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus
           castenholzii DSM 13941]
          Length = 217

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F +F+ + + S+ L VTV+N +++   LI +F     L+LL+ AEF+ +  +++YVG
Sbjct: 6   TVLFLIFAALILASAILTVTVKNIVHAALWLISSFFGVGALYLLMEAEFLGVAQVLIYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           A+ +  LF IM L  D+E ++ R+   R ++       L   LIV      V +   +L 
Sbjct: 66  ALSILILFAIM-LTRDLEGSQNRQLTPRWWIALIVPAALFGLLIVPT----VMTHAWQLP 120

Query: 123 RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                G     +  + IG     +Y    E++  +L ++MIGAIV+
Sbjct: 121 PPPPTGQPPAISGAQQIGTAFMREYLLSFEVAAILLTVAMIGAIVI 166


>gi|304407743|ref|ZP_07389394.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus
           curdlanolyticus YK9]
 gi|304343226|gb|EFM09069.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus
           curdlanolyticus YK9]
          Length = 173

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S + I  S L+V+    ++ V SL   F+   G+F++L AEF+A + +++Y GAV 
Sbjct: 13  FFVLSVLMITGSVLMVSFTKVVHMVLSLAAVFLGVGGMFIMLDAEFLAFVQVLIYAGAVS 72

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL------IVCASNFMVFSAEGEL 121
           +  +F IMM +      E  K    L      + A  L      ++ A++F   S     
Sbjct: 73  ILMIFGIMMTNHQEASGESVKP---LRETLAAVAAIALFGLLFFVIQAADFTDTSGAAPP 129

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                  +N   IG++L+  Y  P E+   +L ++ IGAIVL  R   D
Sbjct: 130 P----AADNTLAIGELLFHGYIVPFELVSVLLTVAFIGAIVLA-RKEAD 173


>gi|292385587|gb|ADE22113.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 7/101 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           IE     KK+ FL   ++GIL   L VC    +++S E +L
Sbjct: 81  IERPWSVKKKRFL---YLGIL---LFVCFLIAVIYSKELQL 115


>gi|292385572|gb|ADE22102.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
 gi|292385583|gb|ADE22110.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 7/101 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           IE     KK+ FL   ++GIL   L VC    +++S E +L
Sbjct: 81  IERPWSVKKKRFL---YLGIL---LFVCFLIAVIYSKELQL 115


>gi|292385591|gb|ADE22116.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 7/101 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           IE     KK+ FL   ++GIL   L VC    +++S E +L
Sbjct: 81  IERPWSVKKKRFL---YLGIL---LFVCFLIAVIYSKELQL 115


>gi|238784992|ref|ZP_04628990.1| NADH-quinone oxidoreductase subunit J [Yersinia bercovieri ATCC
          43970]
 gi|238714108|gb|EEQ06122.1| NADH-quinone oxidoreductase subunit J [Yersinia bercovieri ATCC
          43970]
          Length = 181

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 63/94 (67%), Gaps = 6/94 (6%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99
          V F+F++MML++ ++E    +++R +L  + +IG
Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPTLWIG 94


>gi|292385576|gb|ADE22105.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 286

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 7/101 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           IE     KK+ FL   ++GIL   L VC    +++S E +L
Sbjct: 81  IERPWSVKKKRFL---YLGIL---LFVCFLIAVIYSKELQL 115


>gi|297565705|ref|YP_003684677.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Meiothermus
           silvanus DSM 9946]
 gi|296850154|gb|ADH63169.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus
           silvanus DSM 9946]
          Length = 185

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 7/132 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-ID 80
           VVT RN +++  +LI  F+  AG+++ L A F+ M+ ++VY GA++V FLF+IM+L    
Sbjct: 19  VVTARNAVHAALALIANFLVLAGVYVALDARFLGMVQVIVYAGAIVVLFLFVIMLLSAAQ 78

Query: 81  IEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
            EV   P  +   + +     LA  L++ + N  V    G L+     G   + IG VLY
Sbjct: 79  AEVGINPLSRLTPVAALGALALAVVLMLASRNVPVPPQVGNLN-----GGLPQAIGPVLY 133

Query: 140 TQYAYPLEISGF 151
             + Y L   GF
Sbjct: 134 GPWLYALLAVGF 145


>gi|5042150|emb|CAB44670.1| NDH-G protein [Nostoc sp. PCC 7120]
          Length = 202

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 4/166 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M I  +  VV   + +YS F L   F++ AG++LLL  +FVA   ++VY
Sbjct: 7   VQVVPFGILATMLIGPALGVVLATSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +   P    G +      I++  L    S  MV +     S
Sbjct: 67  VGAVNVLILFAIMLVNKRQDFT-PYPSAG-IRKVLTAIVSVGLFALLST-MVLATPWAYS 123

Query: 123 RLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                G+ ++  IG+  ++ +  P E++  +LL++M+GAI+L  R 
Sbjct: 124 TTPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARRE 169


>gi|158251753|ref|YP_001504367.1| NADH dehydrogenase subunit 6 [Pleurotus ostreatus]
 gi|122893354|gb|ABM67626.1| NADH dehydrogenase subunit 6 [Pleurotus ostreatus]
          Length = 206

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 49/80 (61%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M + F  + +   + SS   +T +NP+ S+  +I  FV AAG  + +G  F+ +  +V+Y
Sbjct: 1  MTTFFVNILALGTLFSSVFAITSKNPVISIIFVIATFVQAAGYLIFIGVNFIGISYIVIY 60

Query: 63 VGAVIVFFLFIIMMLDIDIE 82
          VGA+ V FLF+IMM++I + 
Sbjct: 61 VGAIAVLFLFVIMMINIKLT 80


>gi|118579076|ref|YP_900326.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Pelobacter propionicus DSM 2379]
 gi|118580055|ref|YP_901305.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Pelobacter propionicus DSM 2379]
 gi|118581585|ref|YP_902835.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Pelobacter propionicus DSM 2379]
 gi|118501786|gb|ABK98268.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379]
 gi|118502765|gb|ABK99247.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379]
 gi|118504295|gb|ABL00778.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379]
          Length = 164

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M  +F   FS +A+I + LV+T+R P+    +L+   +  AG++  LGA  +AM  +++Y
Sbjct: 1  MIDVFIAFFSLLAVIFAALVLTLRQPMRCALALVSHMICLAGIYAALGAHVIAMFQVLIY 60

Query: 63 VGAVIVFFLFIIMMLDI-DIEVAEPRKKR 90
          VGAV+VF ++ IM+LD  D     P  ++
Sbjct: 61 VGAVMVFMVYTIMLLDDRDDSYRHPYARK 89


>gi|71892258|ref|YP_277992.1| NADH dehydrogenase I chain J [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796364|gb|AAZ41115.1| NADH dehydrogenase I chain J [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 183

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 15/182 (8%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+    AI+S+  V+   NP+ ++  LI +F++ +  F  LGA F A + ++VY GA++
Sbjct: 5   FYISGITAILSTICVILHYNPMRALLYLIVSFLSISCNFFSLGASFAAALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-------SFFIGILAAELIVCASNFMVFSAEGE 120
           + F+F IMML+    +   +K+  FL        +  +GIL A L+     ++ F  + +
Sbjct: 65  ILFVFAIMMLNTKNIIFGIQKESRFLNPILCCGSALLVGILFAVLL-----YISFVLKDD 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI-SKQ 179
              +     + + +G  L+  Y   +E++ F+LL ++I   V  L     +    I S Q
Sbjct: 120 FINVNNSIIDSKQVGVALFGPYILTVELASFLLLGALIS--VFHLSQNNTLSDDCIDSTQ 177

Query: 180 LE 181
           L+
Sbjct: 178 LK 179


>gi|229591261|ref|YP_002873380.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens SBW25]
 gi|312961694|ref|ZP_07776192.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
          [Pseudomonas fluorescens WH6]
 gi|229363127|emb|CAY50148.1| NADH dehydrogenase I chain J [Pseudomonas fluorescens SBW25]
 gi|311283953|gb|EFQ62536.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
          [Pseudomonas fluorescens WH6]
          Length = 167

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPR 87
          V F+F++MML++    VA+ R
Sbjct: 65 VLFVFVVMMLNLGPASVAQER 85


>gi|309773934|ref|NP_075423.2| ND6 protein [Yarrowia lipolytica]
 gi|54036245|sp|Q9B6E9|NU6M_YARLI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|12718792|emb|CAC28088.2| ND6 protein [Yarrowia lipolytica]
          Length = 185

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 25/177 (14%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F+AI+ +  +++ +NP+ S+  +I  FV AA    L+G    +++ +++Y+GA+ V FLF
Sbjct: 14  FLAILCTIFIISAKNPMVSILYMIALFVIAAMYLYLIGLGIFSLLYIMIYIGAIAVLFLF 73

Query: 73  IIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--GN 129
           II +LDI+  E++     R         +L + +++  S  M++S +  L   + +  GN
Sbjct: 74  IITLLDINSTELSVKSNIRDLP-----LVLISLIVLTISGLMIYSNDSILINKLLEAFGN 128

Query: 130 -----------NVEN------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                      N+EN      IG VL T  A+ L +   +LLL +IG I + ++H+ 
Sbjct: 129 DYNTIITQDWFNIENTTLLTTIGNVLLTNNAFILLVLAIVLLLGIIGPISITMKHKE 185


>gi|238798412|ref|ZP_04641893.1| NADH-quinone oxidoreductase subunit J [Yersinia mollaretii ATCC
          43969]
 gi|238717726|gb|EEQ09561.1| NADH-quinone oxidoreductase subunit J [Yersinia mollaretii ATCC
          43969]
          Length = 181

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 63/94 (67%), Gaps = 6/94 (6%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFL-GSFFIG 99
          V F+F++MML++ ++E    +++R +L  + +IG
Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPTLWIG 94


>gi|268591143|ref|ZP_06125364.1| NADH-quinone oxidoreductase, J subunit [Providencia rettgeri DSM
          1131]
 gi|291313369|gb|EFE53822.1| NADH-quinone oxidoreductase, J subunit [Providencia rettgeri DSM
          1131]
          Length = 180

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  L+ + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAGLVAILATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++   V E  ++R +L
Sbjct: 65 VLFVFVVMMLNLGRSVQE--QERAWL 88


>gi|27464562|gb|AAO16134.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-NZ2]
          Length = 147

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 7/144 (4%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+E IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185
           +L  +           + L S  D
Sbjct: 114 LLAKQPNSPFVYNPHGESLRSRQD 137


>gi|313903489|ref|ZP_07836880.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466310|gb|EFR61833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermaerobacter subterraneus DSM 13965]
          Length = 246

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 11/159 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ F + + + ++ ++ VVT     +S   L   FV  AGLF+LL A   A++ ++
Sbjct: 1   MSGTAVIFAVLAAVVLLGAWRVVTSEQIAHSALFLGLTFVGMAGLFILLKAPTFALLHVL 60

Query: 61  VYVGAVIVFFLFIIMMLDI-------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           VYVGA++   +F IM+ D        D+ + E R +R FL  ++  +      V  +  +
Sbjct: 61  VYVGAILTVVVFAIMLSDPEELRGAGDLALGE-RLRRRFLSPYYGWLPVVVAGVLVAVIL 119

Query: 114 VFSAEGELSRLVFK---GNNVENIGKVLYTQYAYPLEIS 149
              A  +L R+       +++  IG  ++T+YA P E++
Sbjct: 120 AGLAAAQLPRVPLGEPVADDLRAIGGEMFTRYAIPFEVA 158


>gi|94676511|ref|YP_588817.1| NADH-quinone oxidoreductase, chain J [Baumannia cicadellinicola
          str. Hc (Homalodisca coagulata)]
 gi|94219661|gb|ABF13820.1| NADH-quinone oxidoreductase, chain J [Baumannia cicadellinicola
          str. Hc (Homalodisca coagulata)]
          Length = 165

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 48/76 (63%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           L  Y F  +AI S+  V+T   P++++  LI   +  AG+F ++GA F   + ++VY G
Sbjct: 2  ELALYFFGLVAIFSALRVITHNKPMHALLYLIITILAIAGVFFVIGAYFAGALEIIVYAG 61

Query: 65 AVIVFFLFIIMMLDID 80
          AV+V F+F++MM++I 
Sbjct: 62 AVVVLFIFVVMMINIH 77


>gi|317123874|ref|YP_004097986.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043]
 gi|315587962|gb|ADU47259.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043]
          Length = 172

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 17/154 (11%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F +   +  + + L VT +  +++   L+ +    AG +++LG E V ++ L+
Sbjct: 1   MTSREIAFLIVGTITALCAILAVTTKQVVHAALWLLVSLGALAGAYVVLGQELVGIVQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI----EVAEPRKKR---GFLGSFFIGILAAELIVCASNFM 113
           VYVGA++V  LF +M+    I    E+  PR +R     LG     +LAA L+       
Sbjct: 61  VYVGAIVVLVLFALMLTRAPIGRHSEIDTPRWERVLASALGGATTALLAAVLL------P 114

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLE 147
           +F++    +RL         IG+ ++  + +P E
Sbjct: 115 MFAS----ARLAEDAPATPAIGEAIFGTWVWPFE 144


>gi|212712284|ref|ZP_03320412.1| hypothetical protein PROVALCAL_03370 [Providencia alcalifaciens
          DSM 30120]
 gi|212685030|gb|EEB44558.1| hypothetical protein PROVALCAL_03370 [Providencia alcalifaciens
          DSM 30120]
          Length = 181

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +A++++  V+T  NP++++  L+ + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++   V E  ++R +L
Sbjct: 65 VLFVFVVMMLNLGRSVQE--QERAWL 88


>gi|4150871|emb|CAA09814.1| ndhG protein [Hordeum vulgare subsp. vulgare]
          Length = 176

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 14/148 (9%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85

Query: 86  PRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNVENIG 135
             K + +  +G  F  ++    +      +  +++         +++V +G  NNV+ IG
Sbjct: 86  WSKDKNYWTIGDGFTSLVCITFVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163
             L T +  P E+   ILL+S+IGAI +
Sbjct: 146 IHLATDFYLPFELISIILLVSLIGAITM 173


>gi|261346149|ref|ZP_05973793.1| NADH-quinone oxidoreductase, J subunit [Providencia rustigianii
          DSM 4541]
 gi|282565802|gb|EFB71337.1| NADH-quinone oxidoreductase, J subunit [Providencia rustigianii
          DSM 4541]
          Length = 180

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +A++++  V+T  NP++++  L+ + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93
          V F+F++MML++   V E  ++R +L
Sbjct: 65 VLFVFVVMMLNLGRSVQE--QERAWL 88


>gi|160688734|gb|ABX45150.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum]
          Length = 299

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-IEVAE 85
          NPIYSV +LI  F   A + ++L  EF+A I ++V VGAV V FLFIIMM++I+ +E+ +
Sbjct: 25 NPIYSVLNLIIIFWCYACILIILDMEFLACIFILVNVGAVAVLFLFIIMMININVVEIKD 84

Query: 86 PRKK 89
            KK
Sbjct: 85 NLKK 88


>gi|17351909|dbj|BAB78595.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis]
 gi|189304013|gb|ACD85988.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis]
 gi|261498876|gb|ACX84830.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis]
 gi|261888215|gb|ACY06069.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis]
          Length = 162

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 13/152 (8%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F+  + S  V   ++P  S+   +  F+N++ + ++LG EF+A++ L+VYVGA+ V FLF
Sbjct: 9   FLCALLSIAVAYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLF 68

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---- 128
           +IM+L+I     E R     LG   +GIL   L     N ++       SR +  G    
Sbjct: 69  VIMLLEIP--ATELRAYS--LGWSSLGILVFIL-----NGVIQVTPSMGSRGIISGLPGA 119

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
            ++ N+G  LY  +A  L ++ F+L +++ GA
Sbjct: 120 ESISNLGHALYLYFADLLILNSFVLTVALFGA 151


>gi|218508902|ref|ZP_03506780.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli Brasil 5]
          Length = 136

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
           +L+  F+N + +F+LL A F+A+I + VYVGA++V FLF+IMM+D+  E    R   G  
Sbjct: 2   ALMACFLNISAIFVLLEAPFLAVIQIFVYVGAIMVLFLFVIMMIDVR-EAVLQRFLPG-- 58

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVF--KGNNVENIGKVLYTQYAYPLEISGF 151
           G+    +L   L V     +++S    +   V    G+ +  +   L+  Y  P E +  
Sbjct: 59  GNLPALVLVVLLGVEMLVLVLWSDRFSVIEPVAMRGGDQIRQLSTTLFADYLLPFEAASV 118

Query: 152 ILLLSMIGAIVLMLRHRR 169
           ILL +++GAIVL  + + 
Sbjct: 119 ILLAALVGAIVLARKEQE 136


>gi|332702764|ref|ZP_08422852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552913|gb|EGJ49957.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 168

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 7/145 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI--EV 83
            N + ++  LI      AG+++LL A FVA++ ++VYVGAV V   F IM+       E 
Sbjct: 27  HNMVRALLGLILTMFGVAGMYMLLNAPFVALMQVLVYVGAVAVLVFFAIMLTRTPTGGEE 86

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143
           ++P   R +L    + +L A L   A  + V+     LS +      +E +G+ L   Y 
Sbjct: 87  SQPNPSRKYL----LALLTAMLPGAALGW-VWLKHPVLSDVTPVQAPMEALGQGLMEPYI 141

Query: 144 YPLEISGFILLLSMIGAIVLMLRHR 168
              E+   +L ++M GA++L  R R
Sbjct: 142 LAFELISVVLFVAMSGAVILAFRKR 166


>gi|256593090|gb|ACV03500.1| NADH dehydrogenase subunit 6 [Keratoisis cf. flabellum SCF-2009]
          Length = 65

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVY 59

Query: 63 VGAV 66
          VGA+
Sbjct: 60 VGAI 63


>gi|227535962|ref|ZP_03966011.1| possible NADH dehydrogenase (quinone) [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300771668|ref|ZP_07081543.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227244205|gb|EEI94220.1| possible NADH dehydrogenase (quinone) [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300761657|gb|EFK58478.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 167

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 101/176 (57%), Gaps = 25/176 (14%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +F++I  + + +  +NP++SV  L+  F      ++LL A+F+A++  +VY+GA++
Sbjct: 4   FYFVAFLSIFFALMTIFTKNPVHSVLYLVITFFTFTVHYILLNAQFLAVVNFIVYMGAIM 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V FLF++M+L+++ E +EP +      S  + ++ A   +C    ++    G L R++  
Sbjct: 64  VLFLFVLMLLNLNKE-SEPMR------SGVVKVMGAVAGMC----LLVVVLGSL-RIIEI 111

Query: 128 GNN----------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
            N           V+ +G+VL+ ++  P EIS  +LL +M+GA++L    ++D K+
Sbjct: 112 DNGDVVAQPSIGLVKQLGEVLFDKFLLPFEISSILLLTAMVGAVLL---AKKDTKK 164


>gi|268053715|ref|YP_003289122.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis]
 gi|226235329|dbj|BAH47635.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis]
 gi|262318335|dbj|BAI48656.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis]
          Length = 311

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS F L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGFYLVLLFFLGSTISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|325280128|ref|YP_004252670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Odoribacter
           splanchnicus DSM 20712]
 gi|324311937|gb|ADY32490.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Odoribacter
           splanchnicus DSM 20712]
          Length = 169

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++F +L + + ++ S L VT +  + S   L+F     AG++  L   F+  + L VY 
Sbjct: 7   QAVFLFLAAVI-VVCSILTVTTKRILRSATYLLFVLFATAGIYFELNYSFLGAVQLTVYA 65

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           G +IV ++F I++   D + A+  K       FF GILAA        F+  +    +S 
Sbjct: 66  GGIIVLYVFSILLTSSDNKKADKIKNS----KFFAGILAAVGGAALCIFITLTHSFPVSH 121

Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168
            V    N + IG  L      QY  P E+   +LL  +IG I L+ R R
Sbjct: 122 FVPGEINQKVIGTALMGTEKYQYLLPFEVISVLLLACIIGGI-LIARKR 169


>gi|84508621|ref|YP_448668.1| NADH dehydrogenase subunit 6 [Desmarestia viridis]
 gi|45925653|gb|AAS79054.1| NADH dehydrogenase subunit 6 [Desmarestia viridis]
          Length = 311

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 10 LFSFMAIISSFL---VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          +F F+AI+   L   V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+
Sbjct: 6  IFIFIAILGGSLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAI 65

Query: 67 IVFFLFIIMMLDID-IEVAEPRKKRGFL 93
           V  LF++MMLD+  IE     KK+  L
Sbjct: 66 AVLVLFVVMMLDVKAIENPWSAKKKRLL 93


>gi|183599628|ref|ZP_02961121.1| hypothetical protein PROSTU_03115 [Providencia stuartii ATCC
          25827]
 gi|188021880|gb|EDU59920.1| hypothetical protein PROSTU_03115 [Providencia stuartii ATCC
          25827]
          Length = 181

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 53/82 (64%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +A++++  V+T  NP++++  L+ + +  + +F  LGA F   + ++VY GA++
Sbjct: 5  FYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V F+F++MML++   V E  ++
Sbjct: 65 VLFVFVVMMLNLGRSVQEQERE 86


>gi|320352996|ref|YP_004194335.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
 gi|320121498|gb|ADW17044.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
          Length = 184

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 14/170 (8%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   + +I + + V  R  + +V  L   F   AG++  L + F+AM+ +++YVG
Sbjct: 22  GIIFLLTVALVVIGALIAVNARRLVRAVAGLAVCFTGLAGVYYFLLSPFLAMMQMLIYVG 81

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLG---SFFIGIL---AAELIVCASNFMVFSAE 118
           AV +   F IMM   + +     K R  L    +F +  L   A  L+   + + VF  +
Sbjct: 82  AVSILIAFGIMMATPEEQQTPGMKHRSALAGPLAFSVAALIFAALTLLGLKTQWQVFPRQ 141

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           G          +++ +G  L T +    E+   +LLL++IGA+VL  R R
Sbjct: 142 GSF--------DIKAVGMSLLTTHGMVFELISIVLLLAIIGALVLAQRGR 183


>gi|268164103|ref|YP_003288880.1| NADH dehydrogenase subunit 6 [Saccharina coriacea]
 gi|226235426|dbj|BAH47628.1| NADH dehydrogenase subunit 6 [Saccharina coriacea]
 gi|262318413|dbj|BAI48732.1| NADH dehydrogenase subunit 6 [Saccharina coriacea]
          Length = 311

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRG--FLGSF 96
          IE     KK+   +LG+F
Sbjct: 81 IESPWSAKKKRLLYLGAF 98


>gi|84508544|ref|YP_448709.1| NADH dehydrogenase subunit 6 [Dictyota dichotoma]
 gi|45925712|gb|AAS79093.1| NADH dehydrogenase subunit 6 [Dictyota dichotoma]
          Length = 273

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 10/94 (10%)

Query: 8  FYLFSFMAIISSFL-----VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          F L+ F  ++S FL     VV   NP+YS+  L+  FV  + +  L G +++++I ++VY
Sbjct: 2  FELYLFATVMSLFLALGLNVVISHNPVYSILYLVLFFVTGSSILALFGFDYLSLIFVLVY 61

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF 96
          VGA+ V FLF++M+LDI     +   K GF  +F
Sbjct: 62 VGAIAVLFLFVVMILDI-----KTINKSGFDATF 90


>gi|256593063|gb|ACV03486.1| NADH dehydrogenase subunit 6 [Isidella sp. I2a]
 gi|256593066|gb|ACV03488.1| NADH dehydrogenase subunit 6 [Isidella tentaculum]
          Length = 61

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SLF  +FS   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY
Sbjct: 1  MNSLFM-IFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59

Query: 63 VG 64
          VG
Sbjct: 60 VG 61


>gi|183220693|ref|YP_001838689.1| NADH-quinone oxidoreductase subunit J [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910794|ref|YP_001962349.1| NADH dehydrogenase subunit J [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775470|gb|ABZ93771.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779115|gb|ABZ97413.1| NADH-quinone oxidoreductase, chain J [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 199

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 19/190 (10%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F  F  + ++++  VV  +NP+ S  SL+F F   AG++ ++GA F+A + ++VY GA
Sbjct: 10  LLFVFFGTVTVVTALSVVFQKNPVVSAVSLVFTFFALAGIYGIMGALFIATMQVLVYAGA 69

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGF---------LGSFFIGILAAELIVCASNFMVFS 116
           ++V  +F++M+L    E     +K            LG FF+   A    V  S  M   
Sbjct: 70  IMVLVVFVLMLLSQRAETLSRYRKHPIRLVLLSVFVLGFFFLLYSALTTGVPHSEQMGKG 129

Query: 117 AEGELSRLVFKGN-------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            E        +G        NV  +G   Y  Y  P E+   +LL++++GA++L    ++
Sbjct: 130 YENAEYNFPIQGTSTVNAKGNVATVGASTYLDYLLPFEMISILLLVAVLGAVILA---KK 186

Query: 170 DIKRQDISKQ 179
            +   D +K 
Sbjct: 187 KLTEADQTKD 196


>gi|269218346|ref|ZP_06162200.1| NADH dehydrogenase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212205|gb|EEZ78545.1| NADH dehydrogenase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 321

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           LF  +   M  ++ F ++  R  +YS   +I   V  A L+  L A F+ ++ + VY GA
Sbjct: 16  LFGVVAVVMVTLTVFGLLVTRRAVYSAVCVIADMVCLAVLYTALEAPFMGVVQIAVYTGA 75

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +++ FLF++MM+ +D   +     RG               +     M     G +   +
Sbjct: 76  ILMMFLFVLMMIGVDAADSTYETLRGQR-VMAALGALGFAAIAGGAVMDARTPGPVG--L 132

Query: 126 FKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            K N   N   I K ++T +A  +E++G +L+++ +GA+ L   HR+ ++++
Sbjct: 133 AKANEETNPTAIAKSIFTNHALTMELTGALLIVAAVGAMTLT--HRQGVRKR 182


>gi|58045466|gb|AAW65060.1| NADH dehydrogenase subunit 6 [Ecklonia radiata]
          Length = 311

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)

Query: 10 LFSFMAIISSFL---VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          +F F+A +   L   V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+
Sbjct: 6  IFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAI 65

Query: 67 IVFFLFIIMMLDID-IEVAEPRKKRGFL 93
           V  LF++MMLD+  IE     KK+  L
Sbjct: 66 AVLVLFVVMMLDVKAIERPWSSKKKRLL 93



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190
           + ++  +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N++  
Sbjct: 236 LNDLSYLLYSTHAILLLIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAVFS 292

Query: 191 VKVKSG 196
           +K KS 
Sbjct: 293 IKEKSS 298


>gi|58045484|gb|AAW65069.1| NADH dehydrogenase subunit 6 [Saccharina sessilis]
          Length = 311

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|320160453|ref|YP_004173677.1| putative NADH-quinone oxidoreductase subunit J [Anaerolinea
           thermophila UNI-1]
 gi|319994306|dbj|BAJ63077.1| putative NADH-quinone oxidoreductase chain J [Anaerolinea
           thermophila UNI-1]
          Length = 172

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L + + + S+ +VV  R  I+S F LI A    A  F  L A F A+I + VY+GA+ 
Sbjct: 8   FLLIALLTLFSASMVVFARKTIHSAFWLILALFGVAATFATLEASFFAVIQVAVYIGAIA 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR---L 124
           +  +F +M+    +E    +   G+  +  + ++A   I+    +++   +G       L
Sbjct: 68  ILIIFAVMLTRRSMEETGDQLLPGWGWAALVVLIAFGGII----YLLLQWQGVFQAPQVL 123

Query: 125 VFKGNNVENIG--KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G N+E +G   V+  +Y  P E++  +L+ +MIGAI +      D+K++ 
Sbjct: 124 TAGGENLEALGIALVMPDRYVIPFEVASVLLVAAMIGAIYV----AGDLKKRS 172


>gi|292385453|gb|ADE22013.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISXLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ F   F++GIL
Sbjct: 81  IERPWSVKKKRF---FYLGIL 98


>gi|291296247|ref|YP_003507645.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus
          ruber DSM 1279]
 gi|290471206|gb|ADD28625.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus
          ruber DSM 1279]
          Length = 199

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 1/73 (1%)

Query: 7  FFYLFSFMAIISSFL-VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          F+ + + + ++ + L VV ++N +++  +LI  F+  AG+++ L A FVAMI ++VY GA
Sbjct: 5  FWEVLALLVLVGTGLAVVRLQNAVHAALALIANFLVVAGVYVALEARFVAMIQIIVYAGA 64

Query: 66 VIVFFLFIIMMLD 78
          ++V FLF+IM+L 
Sbjct: 65 IVVLFLFVIMLLS 77


>gi|82702150|ref|YP_411716.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosospira
           multiformis ATCC 25196]
 gi|82410215|gb|ABB74324.1| NADH dehydrogenase subunit J [Nitrosospira multiformis ATCC 25196]
          Length = 188

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 64/105 (60%), Gaps = 7/105 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL   +A+ ++ +VVT  + ++++  LI + +  A +F +LGA F A + +++Y GAV+
Sbjct: 5   FYLSGAVAVAATLMVVTRASAVHALLYLIVSLLAVAIIFFVLGAPFAAALEVIIYAGAVM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG------ILAAELI 106
           V F+F+IMML++  + A  +++       ++G      +L AELI
Sbjct: 65  VLFVFVIMMLNLG-KAAAVKEREWLSPGMWVGPSILSALLLAELI 108


>gi|206942067|gb|ACI22630.1| NADH-plastoquinone oxidoreductase subunit 6 [Aneura pinguis]
          Length = 192

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + N ++S F L F     A L+L L ++F+A   +++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVPLTNIVHSAFLLGFVSACTAPLYLSLDSDFIAAAQVLIYVGAINVLLIFAVM 79

Query: 76  MLDIDIEVAEPRKKRG----FLGSFFIGILAAELIVCASNFMVFS-AEGELSRLVFKGNN 130
           ++    E     K  G     +    I +L+   I   S   V+  A       +   +N
Sbjct: 80  LIKKGTEDYSAYKTVGDGITLVPCIGIFLLSDNTISNTSWSEVYLIARSNDDEGIVPMDN 139

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +  IG  L T++  P E+   ILL++++GAI L  R R+ I  +
Sbjct: 140 IRRIGLELVTEFFIPFELMSLILLIALVGAITLA-RARKTINSE 182


>gi|15147287|ref|NP_150360.1| NADH dehydrogenase subunit 6 [Rhizophydium sp. 136]
 gi|15100129|gb|AAK84290.1|AF404306_32 NADH dehydrogenase subunit 6 [Rhizophydium sp. 136]
          Length = 269

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
          + I+SSFL++T  NP+  +  LI  F+ +A ++LLL   F+ +  ++VYVGA+ + FLF+
Sbjct: 13 IGILSSFLILTSLNPVTRLVLLIIVFIMSAFIYLLLDFYFLGLTYIIVYVGAIAILFLFV 72

Query: 74 IMMLDIDIEVAEPRKKR 90
          IMM ++  E  +P   +
Sbjct: 73 IMMSEVK-ETPQPNPHQ 88


>gi|156494382|ref|YP_001427408.1| NADH dehydrogenase subunit 6 [Phaeosphaeria nodorum SN15]
 gi|156106289|gb|ABU49452.1| NADH dehydrogenase subunit 6 [Phaeosphaeria nodorum SN15]
          Length = 198

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 16/179 (8%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L   +AI+   LV+  +NPI SV  LI  F+  +   +L G  F+ +  L+VY+GAV + 
Sbjct: 20  LLYLIAILLGILVIISKNPIVSVLFLIGLFLCISVYLILTGLNFIGLSYLLVYIGAVSIL 79

Query: 70  FLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAEL--IVCASNFMV-FSAEGEL 121
           FLFI+M++++      I+          +GSFF   +   L  +V  +N +  FS +  L
Sbjct: 80  FLFILMLINVRISELLIDSINSIPLAILVGSFFNYFVNNVLPYMVMTNNLLYHFSIKKNL 139

Query: 122 SRLV---FKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           + +    + G     +++ +IG +LY  Y+  L I+  ILLL+M+GAIV+ L+ +  +K
Sbjct: 140 TNVTSVSWDGYLAETSHITSIGNILYGHYSIWLIITSIILLLAMVGAIVITLKPQTHVK 198


>gi|238920559|ref|YP_002934074.1| NADH-quinone oxidoreductase subunit j [Edwardsiella ictaluri
           93-146]
 gi|238870128|gb|ACR69839.1| NADH-quinone oxidoreductase subunit j [Edwardsiella ictaluri
           93-146]
          Length = 190

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  + +A++++  V+T  NP++++  LI + +  A +F  LGA F   + ++VY GA++
Sbjct: 5   FYAAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           V F+F++MML++   V E  ++R +L    +IG     LI+ A   +V  A   L     
Sbjct: 65  VLFVFVVMMLNLGHSVVE--QERAWLRPGVWIGPALLSLILLA---VVLYAISTLQGGFT 119

Query: 127 KGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQ 179
            G  V+   +G  L+  Y   +E+   +LL  ++ A  +   H   D+     + Q
Sbjct: 120 DGRAVDAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHHPGDVLSNKTASQ 175


>gi|27464577|gb|AAO16144.1| NADH dehydrogenase subunit 6 [Cladiella sp. CSM-2002]
          Length = 147

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKIASQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I   S+ +  S +   + ++    N+  IG  LYT Y   + I+  +LL +MIGAI
Sbjct: 54  GLSIIFLFSSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLIASLVLLAAMIGAI 113

Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185
           +L  +           + L S  D
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQD 137


>gi|289065142|ref|YP_003434028.1| NADH-plastoquinone oxidoreductase subunit 6 [Typha latifolia]
 gi|281371825|gb|ADA63752.1| NADH-plastoquinone oxidoreductase subunit 6 [Typha latifolia]
          Length = 176

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  A FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
              K  +L  + IG     LI C +  ++FS    +    + G                N
Sbjct: 85  EYSKDSYL--WTIGDGGTSLI-CTT--ILFSLITTIPDTSWYGIIWTTKSNQIIEQDLIN 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           NV+ IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 140 NVQQIGIHLSTDFYLPFELVSIILLVSLIGAITM 173


>gi|11466850|ref|NP_039447.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|50234041|ref|YP_052818.1| NADH dehydrogenase subunit 6 [Oryza nivara]
 gi|109156636|ref|YP_654255.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group]
 gi|68565730|sp|Q6ENA4|NU6C_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|148880121|sp|P0C329|NU6C_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|148880122|sp|P0C330|NU6C_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|148880123|sp|P0C331|NU6C_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|12053|emb|CAA33908.1| NADH dehydrogenase ND6 [Oryza sativa Japonica Group]
 gi|42795528|gb|AAS46095.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group]
 gi|42795594|gb|AAS46160.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|42795658|gb|AAS46223.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|46805098|dbj|BAD17337.1| rice chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica
           Group]
 gi|46805101|dbj|BAD17340.1| rice chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica
           Group]
 gi|49615065|dbj|BAD26848.1| NADH dehydrogenase subunit 6 [Oryza nivara]
 gi|290790615|gb|ADD62875.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza sativa Japonica
           Group]
 gi|290790684|gb|ADD62943.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza meridionalis]
 gi|290790753|gb|ADD63011.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza australiensis]
 gi|226674|prf||1603356DB NADH dehydrogenase ND6
          Length = 176

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 20/151 (13%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NP +S FSL    V  +  ++LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPTFSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-----------RLVFKG--NNVE 132
             K + F   + IG     L+     F + +   + S           ++V +G  NNV+
Sbjct: 86  WSKDKNF---WTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 143 QIGIHLATDFYLPFELISIILLVSLIGAITM 173


>gi|58045438|gb|AAW65046.1| NADH dehydrogenase subunit 6 [Agarum clathratum]
          Length = 311

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 5/87 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRG--FLGS--FFIGILAA 103
           IE     KK+   +LG+  FF  ++AA
Sbjct: 81  IESPWSAKKKRLLYLGALIFFFFLIAA 107


>gi|57923584|gb|AAW59538.1| NADH dehydrogenase subunit 6 [Pelagophycus porra]
 gi|58045460|gb|AAW65057.1| NADH dehydrogenase subunit 6 [Pelagophycus porra]
          Length = 311

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRG--FLGS 95
          IE     KK+   +LGS
Sbjct: 81 IESPWSAKKKRLLYLGS 97


>gi|11466441|ref|NP_038447.1| NADH dehydrogenase subunit 6 [Mesostigma viride]
 gi|14194990|sp|Q9MUL3|NU6C_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|7259584|gb|AAF43885.1|AF166114_97 subunit 6 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
          Length = 189

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 11/179 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q+L   L     II +  VV + N +YS F L    +  AG++LLL AEF+A   +++Y
Sbjct: 7   IQNLSLLLLEIGTIIGALGVVLLPNILYSGFLLGGVLICIAGIYLLLNAEFIAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK---RGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VGA+ V  LF IM+++  IE   P      R  L SF    +     +  SN M+F  + 
Sbjct: 67  VGAINVIILFAIMLVN-KIENLNPSNNQMMRNGLSSF----ICFSFFILLSN-MIFDTQW 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             +  V    ++  IG  +++ +  P EI   +LL++++GA+   +  + D    +ISK
Sbjct: 121 IDTVGVSTKYSISIIGNHIFSDFLLPFEIVSVLLLVTLVGAV--FIARKEDASEIEISK 177


>gi|298530614|ref|ZP_07018016.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509988|gb|EFI33892.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 174

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 13/167 (7%)

Query: 10  LFSFMAII--SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           LF  +AII    F+ V  ++ + ++  LI      AGLF L+ A F+A++ +++YVGAV 
Sbjct: 14  LFGHIAIIVVGGFMTVLSQSLVRALVGLIMTLFGVAGLFFLMAAPFIALMQILIYVGAVS 73

Query: 68  VFFLFIIMMLDI----DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           V   F IM+ +     D     P +K  + G    G++ A ++  A+   + SA    S 
Sbjct: 74  VLIFFAIMLTNAWPGGDETGRSPGRKYVYAG--LAGLVPAVMLATAA---IRSAPP--SF 126

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           LV +   +  +G+     +  P E+   +L ++M GA++L    RR 
Sbjct: 127 LVPEETEISVLGRFFLEDFILPFELISLLLTIAMAGAVILAFEMRRK 173


>gi|327325777|gb|EGE67569.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL103PA1]
          Length = 284

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNTVTTDV 133

Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRR 169
            G    +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++
Sbjct: 134 IGTDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKK 193

Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196
             +R+ ++ ++ +  ++ S   V+  SG
Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221


>gi|158317827|ref|YP_001510335.1| NADH dehydrogenase subunit J [Frankia sp. EAN1pec]
 gi|158113232|gb|ABW15429.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp.
           EAN1pec]
          Length = 323

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 13/163 (7%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82
           V +R+ ++S   L+      A  +L+  A F+  + ++VY GA++V FLF++M++ +D  
Sbjct: 38  VLMRSAVHSALLLVVNLFCVAVFYLIQDAPFLGFVQIIVYTGAIMVLFLFVLMLVGVDSS 97

Query: 83  VAEPRKKRG------FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
            +     RG       LG  F G+LA  +            E         G NV  IG+
Sbjct: 98  DSLVETLRGQRIAAVILGLGFAGLLAFPIGRAIDGGKAAGLE-----AANTGGNVHAIGR 152

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           +L+TQY +  E    +L+++ IG +V  L HR     +   K+
Sbjct: 153 LLFTQYVFVFEAISVLLVVAAIGTMV--LGHREHTGEKVTQKE 193


>gi|58045476|gb|AAW65065.1| NADH dehydrogenase subunit 6 [Laminaria ephemera]
          Length = 309

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+     F++G L
Sbjct: 81  IESPWSAKKKRL---FYLGAL 98


>gi|317051062|ref|YP_004112178.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Desulfurispirillum indicum S5]
 gi|316946146|gb|ADU65622.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfurispirillum indicum S5]
          Length = 168

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           ++ +L F  F+ ++I  +  ++  R+P+    S I   ++ AGL+ LL A+ +    ++V
Sbjct: 3   IVAALLFLAFATLSIAGAAGLILFRHPLNCAVSFIITLISLAGLYALLSAKVLFAFQIIV 62

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL---GSFFIGILAAELIVCASNFMVFSAE 118
           Y GA++   LFIIM +++  E       R FL   G  F+  +A  L+       +F+  
Sbjct: 63  YAGAIMSLILFIIMFINVRDEDLPDESNRIFLMAGGCVFLVPIAWILLKA-----IFALP 117

Query: 119 GELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              + +V  G   +   G +L+T +  P E+   +LL++++G +VL  R 
Sbjct: 118 YVSTAIVGDGFGGIHQFGMMLFTDWILPFEVVSALLLVALVGGVVLAKRR 167


>gi|302523886|ref|ZP_07276228.1| NADH dehydrogenase subunit J [Streptomyces sp. AA4]
 gi|302432781|gb|EFL04597.1| NADH dehydrogenase subunit J [Streptomyces sp. AA4]
          Length = 275

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   ++++ +  ++  RN ++S   L+   +    L++   A F+    ++VY 
Sbjct: 5   EAIAFWILGPLSLLGALGMIFSRNAVHSALWLVLTMLTLGALYMTQSAPFLGFTQIIVYT 64

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKR---GFLGSFFIGILAAELIVCASNFMVF 115
           GA+++ FLF++M++  D     +EV   R +R   G LG     ++AA +    +N    
Sbjct: 65  GAIMMLFLFVLMLVGRDSSDSVVEVL--RGQRLAAGVLGIGLAALIAAGVFRAMAN---V 119

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           +    L      G     +G++++TQY +P E++  +L+ + +GA+VL    R
Sbjct: 120 TPAKPLDPYQQTGGGPGGLGRLIFTQYLFPFELTSALLITAALGAMVLAFTGR 172


>gi|327179837|ref|YP_004327734.1| NADH dehydrogenase subunit 6 [Placozoan sp. 'Shirahama']
 gi|298561256|dbj|BAJ09639.1| NADH dehydrogenase subunit 6 [Placozoan sp. 'Shirahama']
          Length = 278

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 31  SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
           SVF LI  F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+    +  +  K  
Sbjct: 50  SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGDQKEKETKGY 109

Query: 91  GFL 93
            F+
Sbjct: 110 SFI 112



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 25/36 (69%)

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           G N+E IG VLY  Y Y   +  FILL++MIGAIVL
Sbjct: 237 GTNLEAIGSVLYINYYYAFILVSFILLVAMIGAIVL 272


>gi|295697739|ref|YP_003590977.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           tusciae DSM 2912]
 gi|295413341|gb|ADG07833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           tusciae DSM 2912]
          Length = 179

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           R  +Y   S+   F+  AG+++LLGA+F+A   +++Y GA+ +  LF IM+   D EV E
Sbjct: 38  RKVMYMALSIGLVFLGMAGMYVLLGADFLAFAQILIYAGAITILMLFAIMLTRHD-EVEE 96

Query: 86  PRKK--RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143
             +   R +L       L A ++         +A           N+V  + ++L+T Y 
Sbjct: 97  EERAGLRQWLAGLGAVALGAAMLWAIRTTTWPAA--PAQPPWPAQNSVTALAEMLFTNYV 154

Query: 144 YPLEISGFILLLSMIGAIVL 163
            P E+   +L ++++GA++L
Sbjct: 155 VPFELVSVLLTVALVGAVIL 174


>gi|302423955|ref|XP_003009807.1| NADH dehydrogenase subunit 6 [Verticillium albo-atrum VaMs.102]
 gi|261361697|gb|EEY24125.1| NADH dehydrogenase subunit 6 [Verticillium albo-atrum VaMs.102]
          Length = 222

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 38/197 (19%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S   I+   L++  +NPI SV  LI  F   A   +LLG  F+    L+VY+GAV + FL
Sbjct: 24  SLFIILCGVLIIISKNPIVSVLFLIGLFGGVASYLILLGLNFIGFSYLIVYIGAVSILFL 83

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGI---------LAAEL----------------- 105
           FI+M+++I I   +   K     + FI I         L  +L                 
Sbjct: 84  FILMLINIRISELQSNTKNSIPLALFITIFFNYSLFQVLPYDLAILNNNNNYINNILYYI 143

Query: 106 ------------IVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                       ++  +N + F+        + + +++ +IG +LYT     L +   IL
Sbjct: 144 SLNKQETINDSKLLNTNNDLYFATSNSWDGNLIETSHISSIGNILYTTNNMWLILVSLIL 203

Query: 154 LLSMIGAIVLMLRHRRD 170
           LL+M+GAI++ ++  R+
Sbjct: 204 LLAMVGAIIITIKSNRN 220


>gi|58045444|gb|AAW65049.1| NADH dehydrogenase subunit 6 [Alaria fistulosa]
          Length = 311

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRG--FLGS 95
          IE     KK+   +LGS
Sbjct: 81 IESPWSAKKKRLLYLGS 97


>gi|57923588|gb|AAW59541.1| NADH dehydrogenase subunit 6 [Postelsia palmaeformis]
 gi|58045454|gb|AAW65054.1| NADH dehydrogenase subunit 6 [Postelsia palmaeformis]
          Length = 311

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+  L   + GIL
Sbjct: 81  IESPWSAKKKRLL---YFGIL 98


>gi|307822809|ref|ZP_07653040.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacter
           tundripaludum SV96]
 gi|307736413|gb|EFO07259.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacter
           tundripaludum SV96]
          Length = 172

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 86/157 (54%), Gaps = 9/157 (5%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY+ S +A+ ++ +++T  N ++ +  LI + +    LF LLGA F A++ +++Y GA+
Sbjct: 5   LFYITSAVAVFATVMMITRLNAVHGLLYLILSLLAVGVLFFLLGAYFAAVLEVIIYAGAI 64

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIG--ILAAELIVCASNFMVFSAEGELSR 123
           +V F+F+IMML+   +  E  ++R +L    +IG  +LA  L V     +V     E   
Sbjct: 65  MVLFVFVIMMLNQGQKTLE--QERAWLQPGIWIGPSLLALILFVEMLVIVVSGGSAETGY 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
            V    + + +G  LY  Y   +E++  +LL  ++GA
Sbjct: 123 AV----SAKQVGVALYGPYLLAVELASMLLLAGLVGA 155


>gi|58045474|gb|AAW65064.1| NADH dehydrogenase subunit 6 [Laminaria solidungula]
          Length = 311

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRG--FLGS 95
          IE     KK+   +LGS
Sbjct: 81 IESPWSAKKKRLLYLGS 97


>gi|282855265|ref|ZP_06264597.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes J139]
 gi|282581853|gb|EFB87238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes J139]
 gi|314983069|gb|EFT27161.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL110PA3]
 gi|315090602|gb|EFT62578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL110PA4]
 gi|315093911|gb|EFT65887.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL060PA1]
 gi|315104130|gb|EFT76106.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL050PA2]
          Length = 284

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTDV 133

Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRR 169
            G    +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++
Sbjct: 134 IGTDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKK 193

Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196
             +R+ ++ ++ +  ++ S   V+  SG
Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221


>gi|57923564|gb|AAW59523.1| NADH dehydrogenase subunit 6 [Undaria pinnatifida]
 gi|58045452|gb|AAW65053.1| NADH dehydrogenase subunit 6 [Undaria pinnatifida]
          Length = 311

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|292385544|gb|ADE22081.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKHFL---YLGIL 98


>gi|57923560|gb|AAW59520.1| NADH dehydrogenase subunit 6 [Pterygophora californica]
 gi|58045448|gb|AAW65051.1| NADH dehydrogenase subunit 6 [Pterygophora californica]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|58045464|gb|AAW65059.1| NADH dehydrogenase subunit 6 [Eisenia arborea]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V++ +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VISTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IERPWSAKKKRLL 93


>gi|91176238|ref|YP_537111.1| NADH dehydrogenase subunit 6 [Paracoccidioides brasiliensis]
 gi|63081167|gb|AAY30330.1| NADH dehydrogenase subunit 6 [Paracoccidioides brasiliensis]
          Length = 185

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 15/155 (9%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           +NP+ S+F LI  F + +    L+G EF+ +  L+VY+GAV + FLFI+M+  I++ ++E
Sbjct: 35  KNPVISIFFLIGLFSSISCYLFLIGLEFIGLSYLLVYIGAVSILFLFILML--INLRISE 92

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNF-----------MVFSAEGELSRLVFKGNNVENI 134
              K     S  + I +  L +   NF           +++        ++     + +I
Sbjct: 93  LTTKTT--NSLPLAIFSFILFIFILNFNLPINTRDNPEIIYVISLNWDNILINNTQINSI 150

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           G +LYT Y+  L I   ILLL+M+G+IV+ L   +
Sbjct: 151 GNILYTNYSLWLIILSVILLLAMVGSIVITLNKNK 185


>gi|314923985|gb|EFS87816.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL001PA1]
          Length = 284

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTDV 133

Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRR 169
            G    +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++
Sbjct: 134 IGTDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKK 193

Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196
             +R+ ++ ++ +  ++ S   V+  SG
Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221


>gi|27464574|gb|AAO16142.1| NADH dehydrogenase subunit 6 [Klyxum simplex]
          Length = 147

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKIDSQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I   S+ +  S +   + ++    N+  IG  LYT Y   + I+  +LL +MIGAI
Sbjct: 54  GLSVIFLFSSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLAAMIGAI 113

Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185
           +L  +           + L S  D
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQD 137


>gi|57923552|gb|AAW59514.1| NADH dehydrogenase subunit 6 [Lessoniopsis littoralis]
 gi|58045446|gb|AAW65050.1| NADH dehydrogenase subunit 6 [Lessoniopsis littoralis]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|254032050|ref|YP_001023812.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ49]
          Length = 254

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
          SVF LI  F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+    +  +  K  
Sbjct: 26 SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGDQKDKETKGY 85

Query: 91 GFL 93
           F+
Sbjct: 86 SFI 88



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 25/36 (69%)

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           G N+E IG VLY  Y Y   +  FILL++MIGAIVL
Sbjct: 213 GTNLEAIGSVLYINYYYAFILVSFILLVAMIGAIVL 248


>gi|114177223|gb|ABI53775.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ49]
          Length = 278

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 31  SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
           SVF LI  F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+    +  +  K  
Sbjct: 50  SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGDQKDKETKGY 109

Query: 91  GFL 93
            F+
Sbjct: 110 SFI 112



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 25/36 (69%)

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           G N+E IG VLY  Y Y   +  FILL++MIGAIVL
Sbjct: 237 GTNLEAIGSVLYINYYYAFILVSFILLVAMIGAIVL 272


>gi|292385595|gb|ADE22119.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
 gi|292385599|gb|ADE22122.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
 gi|292385603|gb|ADE22125.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|172072939|ref|YP_001806700.1| NADH dehydrogenase subunit 6 [Cryptomeria japonica]
 gi|221272319|sp|B1VKI7|NU6C_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|171854958|dbj|BAG16698.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica]
 gi|239794326|dbj|BAH73323.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica]
 gi|239794409|dbj|BAH73405.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica]
          Length = 180

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 6/153 (3%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           VV + N IYS  SL    +  +  +++L A+FVA+  +++Y+GAV +  LF +M+++   
Sbjct: 26  VVLLTNIIYSALSLGLVLICISFFYIILNADFVAVAQILIYIGAVNILILFAVMLMNNPK 85

Query: 81  -IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SAEGELSRLVFKG--NNVENIG 135
               A P      + S     L   LI    N   F  S   +  +++ +   NN++ IG
Sbjct: 86  YPNYAPPWTVGDSISSIVCTSLFCSLITIILNISWFGISLTQKSDQMLERDLTNNIQRIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             L T +  P E+   ILL+++IGAI +  R  
Sbjct: 146 AHLSTDFFLPFELISIILLVALIGAITIARREE 178


>gi|57923532|gb|AAW59499.1| NADH dehydrogenase subunit 6 [Alaria marginata]
 gi|57923536|gb|AAW59502.1| NADH dehydrogenase subunit 6 [Alaria nana]
 gi|57923540|gb|AAW59505.1| NADH dehydrogenase subunit 6 [Alaria taeniata]
 gi|57923572|gb|AAW59529.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia]
 gi|58045442|gb|AAW65048.1| NADH dehydrogenase subunit 6 [Alaria marginata]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|313793599|gb|EFS41639.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL110PA1]
 gi|327452510|gb|EGE99164.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL092PA1]
          Length = 284

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGV 133

Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169
            G    +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++
Sbjct: 134 IGTDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193

Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196
             +R+ ++ ++ +  ++ S   V+  SG
Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221


>gi|289425611|ref|ZP_06427383.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes SK187]
 gi|289427016|ref|ZP_06428735.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes J165]
 gi|289153912|gb|EFD02605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes SK187]
 gi|289159838|gb|EFD08023.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes J165]
 gi|313763293|gb|EFS34657.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL013PA1]
 gi|313802890|gb|EFS44103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL110PA2]
 gi|313806336|gb|EFS44852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL087PA2]
 gi|313813683|gb|EFS51397.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL025PA1]
 gi|313814967|gb|EFS52681.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL059PA1]
 gi|313819447|gb|EFS57161.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL046PA2]
 gi|313821253|gb|EFS58967.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL036PA1]
 gi|313822292|gb|EFS60006.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL036PA2]
 gi|313826150|gb|EFS63864.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL063PA1]
 gi|313829361|gb|EFS67075.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL063PA2]
 gi|313838158|gb|EFS75872.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL086PA1]
 gi|314916747|gb|EFS80578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL005PA4]
 gi|314919127|gb|EFS82958.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL050PA1]
 gi|314921207|gb|EFS85038.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL050PA3]
 gi|314925999|gb|EFS89830.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL036PA3]
 gi|314930365|gb|EFS94196.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL067PA1]
 gi|314956148|gb|EFT00544.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL027PA1]
 gi|314959681|gb|EFT03783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL002PA1]
 gi|314962255|gb|EFT06356.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL002PA2]
 gi|314963231|gb|EFT07331.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL082PA1]
 gi|314969774|gb|EFT13872.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL037PA1]
 gi|314979340|gb|EFT23434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL072PA2]
 gi|314986328|gb|EFT30420.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL005PA2]
 gi|314988575|gb|EFT32666.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL005PA3]
 gi|315079692|gb|EFT51680.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL053PA2]
 gi|315083917|gb|EFT55893.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL027PA2]
 gi|315085054|gb|EFT57030.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL002PA3]
 gi|315089483|gb|EFT61459.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL072PA1]
 gi|315098095|gb|EFT70071.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL059PA2]
 gi|315102687|gb|EFT74663.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL046PA1]
 gi|315108829|gb|EFT80805.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL030PA2]
 gi|327325718|gb|EGE67515.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL096PA3]
 gi|327447749|gb|EGE94403.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL013PA2]
 gi|327451640|gb|EGE98294.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL087PA3]
 gi|327452293|gb|EGE98947.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL083PA2]
 gi|328752126|gb|EGF65742.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL025PA2]
 gi|328755070|gb|EGF68686.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL020PA1]
 gi|328757018|gb|EGF70634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL087PA1]
          Length = 284

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGV 133

Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169
            G    +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++
Sbjct: 134 IGTDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193

Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196
             +R+ ++ ++ +  ++ S   V+  SG
Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221


>gi|110578641|ref|YP_667830.1| NADH dehydrogenase subunit 6 [Verticillium dahliae]
 gi|84682168|gb|ABC60427.1| NADH dehydrogenase subunit 6 [Verticillium dahliae]
          Length = 222

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 38/197 (19%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S   I+   L++  +NPI SV  LI  F   A   +LLG  F+    L+VY+GAV + FL
Sbjct: 24  SLFIILCGVLIIISKNPIVSVLFLIGLFGGVASYLILLGLNFIGFSYLIVYIGAVSILFL 83

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGI---------LAAEL----------------- 105
           FI+M+++I I   +   K     + FI I         L  +L                 
Sbjct: 84  FILMLINIRISELQSNTKNSIPLALFITIFFNYSLFQVLPYDLAILNNNNNYINNILYYI 143

Query: 106 ------------IVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                       ++   N + F+        + + +++ +IG +LYT     L +   IL
Sbjct: 144 SLNKQETINDSKLLNTDNDLYFATSNSWDGNLIETSHISSIGNILYTTNNMWLILVSLIL 203

Query: 154 LLSMIGAIVLMLRHRRD 170
           LL+M+GAI++ ++  R+
Sbjct: 204 LLAMVGAIIITIKSNRN 220


>gi|58045440|gb|AAW65047.1| NADH dehydrogenase subunit 6 [Dictyoneurum californicum]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+  L   ++G L
Sbjct: 81  IESPWSAKKKRLL---YLGTL 98


>gi|292385615|gb|ADE22134.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|295131451|ref|YP_003582114.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes SK137]
 gi|291376680|gb|ADE00535.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes SK137]
 gi|313773339|gb|EFS39305.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL074PA1]
 gi|313810758|gb|EFS48472.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL083PA1]
 gi|313831069|gb|EFS68783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL007PA1]
 gi|313833199|gb|EFS70913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL056PA1]
 gi|314973947|gb|EFT18043.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL053PA1]
 gi|314976875|gb|EFT20970.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL045PA1]
 gi|314984997|gb|EFT29089.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL005PA1]
 gi|315081020|gb|EFT52996.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL078PA1]
 gi|315097698|gb|EFT69674.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL038PA1]
 gi|327330834|gb|EGE72579.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL096PA2]
 gi|327442873|gb|EGE89527.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL043PA2]
 gi|327445265|gb|EGE91919.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL043PA1]
 gi|328761554|gb|EGF75072.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL099PA1]
          Length = 284

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGV 133

Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169
            G    +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++
Sbjct: 134 IGTDHPVGLGQASTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193

Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196
             +R+ ++ ++ +  ++ S   V+  SG
Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221


>gi|58045472|gb|AAW65063.1| NADH dehydrogenase subunit 6 [Laminaria yezoensis]
 gi|226235344|dbj|BAH47621.1| NADH dehydrogenase subunit 6 [Laminaria yezoensis]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|57923556|gb|AAW59517.1| NADH dehydrogenase subunit 6 [Pleurophycus gardneri]
 gi|58045450|gb|AAW65052.1| NADH dehydrogenase subunit 6 [Pleurophycus gardneri]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|57923548|gb|AAW59511.1| NADH dehydrogenase subunit 6 [Alaria sp. LL02FI]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|327333131|gb|EGE74858.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL097PA1]
          Length = 284

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGV 133

Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169
            G    +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++
Sbjct: 134 IGTDHPVGLGQANAAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193

Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196
             +R+ ++ ++ +  ++ S   V+  SG
Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221


>gi|292385611|gb|ADE22131.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+ FL   ++GIL
Sbjct: 81  IERPWSVKKKRFL---YLGIL 98


>gi|58045478|gb|AAW65066.1| NADH dehydrogenase subunit 6 [Saccharina gyrata]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|58045436|gb|AAW65045.1| NADH dehydrogenase subunit 6 [Costaria costata]
          Length = 311

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|58045470|gb|AAW65062.1| NADH dehydrogenase subunit 6 [Laminaria digitata]
          Length = 311

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93



 Score = 34.3 bits (77), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N+I  +K KS
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAIFSIKEKS 297


>gi|58045480|gb|AAW65067.1| NADH dehydrogenase subunit 6 [Saccharina latissima]
 gi|226235350|dbj|BAH47623.1| NADH dehydrogenase subunit 6 [Laminaria sachalinensis]
          Length = 311

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|83589832|ref|YP_429841.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Moorella
           thermoacetica ATCC 39073]
 gi|83572746|gb|ABC19298.1| NADH dehydrogenase subunit J [Moorella thermoacetica ATCC 39073]
          Length = 168

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 18/168 (10%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +L F++ + + I ++  VV ++N ++S   L+  F   AGL++LL AEF+A + L+VY
Sbjct: 4   ISALLFWVLAAITIAAALAVVLLKNIVHSALYLVLTFAGVAGLYILLQAEFLAAVQLLVY 63

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAEG 119
            GAV +  +F +M+            +RG + +   F I  LAA ++  A   ++    G
Sbjct: 64  AGAVAILIVFAVML-----------TRRGDIKASNLFNINYLAAGVVSLALFVVIVLGTG 112

Query: 120 ELSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVL 163
            ++          N    +      ++A P E++  +LL++M+GAI+L
Sbjct: 113 RMTWTTAPAQAPANNVAAIANAFLGRFAIPFEVAAVLLLVAMVGAILL 160


>gi|57923528|gb|AAW59496.1| NADH dehydrogenase subunit 6 [Alaria esculenta]
          Length = 311

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|268164064|ref|YP_003288829.1| NADH dehydrogenase subunit 6 [Saccharina angustata]
 gi|58045482|gb|AAW65068.1| NADH dehydrogenase subunit 6 [Saccharina angustata]
 gi|226235356|dbj|BAH47625.1| NADH dehydrogenase subunit 6 [Saccharina angustata]
 gi|262318374|dbj|BAI48694.1| NADH dehydrogenase subunit 6 [Saccharina angustata]
          Length = 311

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|21450018|ref|NP_659280.1| NADH dehydrogenase subunit 6 [Laminaria digitata]
 gi|21425343|emb|CAC87976.1| NADH dehydrogenase subunit 6 [Laminaria digitata]
          Length = 311

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93



 Score = 34.3 bits (77), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N+I  +K KS
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAIFSIKEKS 297


>gi|289474488|gb|ADC97863.1| NADH dehydrogenase subunit 6 [Sibogagorgia dennisgordoni]
          Length = 153

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 15/155 (9%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVL--------MLRHRRDIKRQDISKQLE 181
           ++M+GAI+L        +  H     RQD+  Q+ 
Sbjct: 115 VAMVGAILLAKQPNTPSLYSHVEIRSRQDLFLQIS 149


>gi|317121162|ref|YP_004101165.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermaerobacter marianensis DSM 12885]
 gi|315591142|gb|ADU50438.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermaerobacter marianensis DSM 12885]
          Length = 222

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ F + + + ++ ++ VVT     +S   L   FV  AGLF+LL A   A++ ++
Sbjct: 1   MTGAAVIFAILAAVVLLGAWRVVTSEQIAHSALFLGLTFVGMAGLFVLLQAPTFALLHVL 60

Query: 61  VYVGAVIVFFLFIIMMLDI-------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           VYVGA++   +F IM+ D        D+   E R +R  L  ++  I      V  +  +
Sbjct: 61  VYVGAILTVVVFAIMLSDPEELRGAGDLPPGE-RLRRRLLSPYYGWIPVVVAGVLVAVVL 119

Query: 114 VFSAEGELSRLVFK---GNNVENIGKVLYTQYAYPLEI 148
              A  +L R+       +++  IG+ ++T+YA P E+
Sbjct: 120 ASLAAAQLPRVPLGEPVADDLRAIGRDMFTRYALPFEV 157


>gi|302870007|ref|YP_003838644.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Micromonospora aurantiaca ATCC 27029]
 gi|302572866|gb|ADL49068.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora aurantiaca ATCC 27029]
          Length = 182

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    +       +A+ +  LVV  R+ + +   L+      AG +L+L AE VA + ++
Sbjct: 1   MTGADVLLLALGAVAVGAGALVVATRHLVRAGLWLVVCLGALAGDYLVLTAELVAWVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFS 116
           +YVGAV+V  LF +M+    I  ++   + G+         AA L+   S      ++  
Sbjct: 61  IYVGAVVVLLLFAVMLTRAPIGPSDDLDRPGW---------AAALVGAGSGLGLAVLLID 111

Query: 117 AEGELSRLVFK-GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           A    SR+        E +G+ L+  +  P E+   +LL +++GAIVL    R DI R+ 
Sbjct: 112 AF-RWSRVDLPVAGTAERLGEQLFRSWVLPFEVLSVLLLAALVGAIVL---SRPDIGRRS 167

Query: 176 ISKQLESNPDNS 187
                    D  
Sbjct: 168 TDTSASQPADEG 179


>gi|255533954|ref|YP_003094326.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter
           heparinus DSM 2366]
 gi|255346938|gb|ACU06264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter
           heparinus DSM 2366]
          Length = 165

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 102/170 (60%), Gaps = 10/170 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FY  + +++I S LV+  +NP++SV  LI  F      ++LL A+F+A++  +VY
Sbjct: 1   MGTSVFYFVAALSVIFSLLVIFSKNPVHSVLYLIVTFFTFTVHYVLLNAQFLAVVNFIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGEL 121
           +GA++V FLF++M+L+++ +  EP  K G +    +G++A   L+V  +  +  +A  + 
Sbjct: 61  MGAIMVLFLFVLMLLNLNKD-NEPL-KSGLVK--VVGVIAGCCLLVTLAGALKATALSD- 115

Query: 122 SRLVFKGNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             +V +  N   V+++GK L+  +  P E+   +LL +M+GAI+L  + +
Sbjct: 116 -PVVLRNPNLGLVKSLGKELFGPFMLPFELCSILLLSAMVGAILLTKKEK 164


>gi|57923544|gb|AAW59508.1| NADH dehydrogenase subunit 6 [Alaria sp. LL01AP]
 gi|57923568|gb|AAW59526.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia]
 gi|58045458|gb|AAW65056.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia]
          Length = 311

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|332676320|gb|AEE73136.1| NADH-quinone oxidoreductase subunit J [Propionibacterium acnes 266]
          Length = 284

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILVVGNAVTTGV 133

Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169
            G    +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++
Sbjct: 134 IGTDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193

Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196
             +R+ ++ ++ +  ++ S   V+  SG
Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221


>gi|54024628|ref|YP_118870.1| NADH dehydrogenase subunit J [Nocardia farcinica IFM 10152]
 gi|54016136|dbj|BAD57506.1| putative NADH dehydrogenase I chain J [Nocardia farcinica IFM
           10152]
          Length = 274

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 95/185 (51%), Gaps = 16/185 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +A++ +  +V     ++S   L    +  A +++   A F+ ++ +VVY 
Sbjct: 17  EAVQFWILAPLAVLGALGMVFAAKAVHSAICLAATMIALAVMYIAQDALFLGVVQIVVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGI------LAAELIVCASNFMVFS 116
           GAV++ FLF++M++ +D   +     RG  + +  +GI      +A   I    + + F 
Sbjct: 77  GAVMMLFLFVLMLVGVDSAESLRETLRGQRIAATVVGIGFGLLLMAGIGIGIRESGVTFP 136

Query: 117 AEGELSRLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           A G      F G +V   + ++++ +Y +  E++G +L+ + IGA+VL   HR     + 
Sbjct: 137 ATG------FPGRDVIAELAELIFLRYVWAFELTGALLITATIGAMVLA--HRDHFGART 188

Query: 176 ISKQL 180
             ++L
Sbjct: 189 TQREL 193


>gi|117927485|ref|YP_872036.1| NADH dehydrogenase subunit J [Acidothermus cellulolyticus 11B]
 gi|117647948|gb|ABK52050.1| NADH dehydrogenase subunit J [Acidothermus cellulolyticus 11B]
          Length = 275

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 24/187 (12%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVF-----SLIFAFVNAAGLFLLLGAEFVAMIT 58
           ++  F++   +A++++  VV  R+ +++        LIFA   AA       A  +A + 
Sbjct: 15  EAALFWVLGPIAVLAALGVVFARHTVHAALLLGGVMLIFAIFYAA-----QDAPLIAFVQ 69

Query: 59  LVVYVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           ++VY GAV++ FLF++M++ +D +   V   R +R  L + F GI    L++        
Sbjct: 70  IIVYTGAVMMLFLFVLMLIGVDTKERLVETLRGQR--LATVFAGIGFLLLLLAGLGNAAI 127

Query: 116 SAEGELSRL---------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                L +          V  G N+  + K+L+T+Y +  E++  +L+ + +GA+VL  R
Sbjct: 128 GTSAGLHQANYPTNAVGQVQTGGNIYQVAKLLFTRYVFAFEVTSALLITAALGAMVLAHR 187

Query: 167 HRRDIKR 173
            R   +R
Sbjct: 188 QRVGRRR 194


>gi|255007681|ref|ZP_05279807.1| putative NADH dehydrogenase chain J [Bacteroides fragilis 3_1_12]
 gi|313145376|ref|ZP_07807569.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12]
 gi|313134143|gb|EFR51503.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12]
          Length = 170

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +   I  S L VT +  + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   LTLETVVFYFLAVFIIAMSILTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118
           VY G ++V ++F I++   + + A   K+  FL      I+ A L+  +  ++  V +++
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDRAAHLKRSKFLAGLATTIVGAALVLFITLTHKFVPTSD 122

Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168
            E   +     +++ IG  L +  +Y Y  P E    +LL  ++G + L+ R R
Sbjct: 123 PEPVEI-----SIKTIGHALLSSGKYGYVLPFEAVSILLLACIVGGL-LIARKR 170


>gi|291303391|ref|YP_003514669.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572611|gb|ADD45576.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Stackebrandtia nassauensis DSM 44728]
          Length = 173

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 9/173 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  +    F  + + ++  VVT  + + +   L+ A    A  FL+L AE VA + ++
Sbjct: 1   MTVTDVLLVAFGLLTLGAAVRVVTTAHLVRAGLWLVVALGGLAACFLVLTAELVAWVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL---IVCASNFMVFSA 117
           +YVGAV+V  LF +M+    I  A P   R       +G  AA L   ++ A  F   S 
Sbjct: 61  IYVGAVVVLLLFAVMLTRAPIG-ASPEMDRARWPGAIVGA-AAGLGLSVLLADAFRWTSI 118

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           + +      +    + +G  ++  +  P E+   +LL +++GAI++  + +RD
Sbjct: 119 DAQ----AVEPGTAKRLGTEIFGNWVLPFELLSVLLLAALVGAILVSAKQKRD 167


>gi|313896077|ref|ZP_07829631.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|320529343|ref|ZP_08030431.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           artemidis F0399]
 gi|312975502|gb|EFR40963.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|320138309|gb|EFW30203.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           artemidis F0399]
          Length = 164

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 27/171 (15%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S  FY+ + + +I +  VV   N ++S   L+ +F+  A ++  +GAEF+  + L+VY G
Sbjct: 2   SFIFYVLAAITVIGALGVVLSPNVVHSALFLVVSFIGVASMYFYIGAEFLGAVQLMVYSG 61

Query: 65  AVIVFFLFIIMMLDID-IEVAEPRKK------RGFL-GSFF----IGILAAELIVCASNF 112
           AV V  +  IM+   D +  + P +K       G L G FF    +GI+ A +       
Sbjct: 62  AVAVLIVMAIMLTRRDSMAHSNPSQKLFRRVVTGLLAGGFFFLMGLGIVLAPM------- 114

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                +G L            I  ++   Y  P EI   +LL +MIGA++L
Sbjct: 115 ----PDGMLG----APTGAHEIAALMLGAYVLPFEIGAVLLLAAMIGALLL 157


>gi|289474443|gb|ADC97833.1| NADH dehydrogenase subunit 6 [Corallium laauense]
          Length = 154

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 21/160 (13%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   S ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYISSPVIGSKTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVLM--------------LRHRRDIKRQDISKQL 180
           ++M+GAI+L               +R R+D+  Q   K L
Sbjct: 115 VAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRKHL 154


>gi|58045492|gb|AAW65073.1| NADH dehydrogenase subunit 6 [Cymathaere triplicata]
          Length = 311

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          +E     KK+  L
Sbjct: 81 VESPWSAKKKRLL 93


>gi|292385457|gb|ADE22016.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
            E     KK+ F   F++GIL
Sbjct: 81  TERPWSVKKKRF---FYLGIL 98


>gi|58045462|gb|AAW65058.1| NADH dehydrogenase subunit 6 [Egregia menziesii]
          Length = 311

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21  VTSTQNPVYSGLYLVLLFFLGSLISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81  IEVAEPRKKRGFLGSFFIGIL 101
           IE     KK+  L   ++G+L
Sbjct: 81  IESPWSAKKKRLL---YLGVL 98


>gi|315501488|ref|YP_004080375.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. L5]
 gi|315408107|gb|ADU06224.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. L5]
          Length = 182

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    +       +A+ +  LVV  R+ + +   L+      AG +L+L AE VA + ++
Sbjct: 1   MTGADVLLLALGAVAVGAGALVVATRHLVRAGLWLVVCLGALAGDYLVLTAELVAWVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFS 116
           +YVGAV+V  LF +M+    I  ++   + G+         AA L+   S      ++  
Sbjct: 61  IYVGAVVVLLLFAVMLTRAPIGPSDDLDRPGW---------AAALVGAGSGLGLAVLLID 111

Query: 117 AEGELSRLVFK-GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           A    SR+        E +G+ L+  +  P E+   +LL +++GAIVL    R DI R+ 
Sbjct: 112 AF-RWSRVDLPVAGTAERLGEQLFRSWVLPFEVLSVLLLAALVGAIVL---SRPDIGRRS 167

Query: 176 ISKQLESNPDNS 187
                    D  
Sbjct: 168 TDTSAAQPADEG 179


>gi|50843377|ref|YP_056604.1| NADH dehydrogenase subunit J [Propionibacterium acnes KPA171202]
 gi|50840979|gb|AAT83646.1| NADH dehydrogenase I chain J [Propionibacterium acnes KPA171202]
 gi|315107933|gb|EFT79909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL030PA1]
          Length = 284

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 107/208 (51%), Gaps = 12/208 (5%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGV 133

Query: 118 EGE-----LSRL-VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169
            G      L +     GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++
Sbjct: 134 IGTDYPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193

Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196
             +R+ ++ ++ +  ++ S   V+  SG
Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221


>gi|27464550|gb|AAO16126.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-A]
          Length = 147

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKADSQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYINNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185
           +L  +           + L S  D
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQD 137


>gi|257054401|ref|YP_003132233.1| NADH dehydrogenase subunit J [Saccharomonospora viridis DSM 43017]
 gi|256584273|gb|ACU95406.1| NADH dehydrogenase subunit J [Saccharomonospora viridis DSM 43017]
          Length = 304

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 94/186 (50%), Gaps = 27/186 (14%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+  +  +V  RN ++S   L+   ++   L+L   A+F+    ++VY 
Sbjct: 29  EAIAFWILGPLALAGALGMVFARNAVHSALWLVLTMLSLGMLYLAQQAQFLGFTQIIVYT 88

Query: 64  GAVIVFFLFIIMML-----DIDIEVAEPRKKR---GFLGSFFIGILAAEL------IVCA 109
           GA+++ FLF++M++     D  +EV   R +R   G +G    G+LAA L      +  A
Sbjct: 89  GAIMMLFLFVLMLVGRESSDSVVEVL--RGQRLMAGLVGVGVAGLLAAALTRAIADVTPA 146

Query: 110 SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL--MLRH 167
                +SA+G  +  +          ++++T Y +P E++  +L+ + +  +VL    RH
Sbjct: 147 PLLDPWSADGGGAGGLG---------RLIFTDYLFPFELTAALLITAAMAGMVLSFTSRH 197

Query: 168 RRDIKR 173
            +  KR
Sbjct: 198 VKGGKR 203


>gi|292385422|gb|ADE21990.1| NADH dehydrogenase subunit 6 [Ecklonia cava]
          Length = 311

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)

Query: 10 LFSFMAIISSFL---VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          +F F+A +   L   V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+
Sbjct: 6  IFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAI 65

Query: 67 IVFFLFIIMMLDID-IEVAEPRKKRGFL 93
           V  LF++MMLD+  IE     K++  L
Sbjct: 66 AVLVLFVVMMLDVKAIERPWSSKEKRLL 93


>gi|15088741|ref|NP_150111.1| NADH dehydrogenase subunit 6 [Hyaloraphidium curvatum]
 gi|15077948|gb|AAK83433.1|AF402142_17 NADH dehydrogenase subunit 6 [Hyaloraphidium curvatum]
          Length = 165

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 8  FYLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          ++LF  + I   +S  LV+T R+PI SV  L+  ++   GLFLL+   F+ +  ++VYVG
Sbjct: 3  YWLFQILLISIVVSGLLVMTSRSPINSVIYLVLVYLAGGGLFLLMDHTFLGLTLIIVYVG 62

Query: 65 AVIVFFLFIIMMLDI 79
          A+ + FLF + M+++
Sbjct: 63 AIAILFLFTVFMINL 77


>gi|27464580|gb|AAO16146.1| NADH dehydrogenase subunit 6 [Sinularia gaweli]
          Length = 147

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185
           +L  +           + L S  D
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSKQD 137


>gi|330944408|gb|EGH46423.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae
          pv. pisi str. 1704B]
          Length = 169

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A +S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y GA++
Sbjct: 5  FYFASGIAFVSTLRVITNTNPVHALLYLIISLIAVAITFFSLGAPFAGVLEVIAYAGAIM 64

Query: 68 VFFLFIIMMLDI-DIEVAEPR 87
          V F+F++MML++  + V + R
Sbjct: 65 VLFVFVVMMLNLGPVSVQQER 85


>gi|268053559|ref|YP_003288918.1| NADH dehydrogenase subunit 6 [Saccharina japonica]
 gi|268053598|ref|YP_003288956.1| NADH dehydrogenase subunit 6 [Saccharina religiosa]
 gi|268053637|ref|YP_003288994.1| NADH dehydrogenase subunit 6 [Saccharina ochotensis]
 gi|268053676|ref|YP_003289071.1| NADH dehydrogenase subunit 6 [Saccharina diabolica]
 gi|226235325|dbj|BAH47633.1| NADH dehydrogenase subunit 6 [Saccharina japonica]
 gi|262318179|dbj|BAI48504.1| NADH dehydrogenase subunit 6 [Saccharina japonica]
 gi|262318218|dbj|BAI48542.1| NADH dehydrogenase subunit 6 [Saccharina religiosa]
 gi|262318257|dbj|BAI48580.1| NADH dehydrogenase subunit 6 [Saccharina ochotensis]
 gi|262318296|dbj|BAI48618.1| NADH dehydrogenase subunit 6 [Saccharina diabolica]
          Length = 311

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSTISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSAKKKRLL 93


>gi|58045468|gb|AAW65061.1| NADH dehydrogenase subunit 6 [Laminaria sinclairii]
          Length = 311

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80

Query: 81 IEVAEPRKKRGFL 93
          IE     KK+  L
Sbjct: 81 IESPWSVKKKRLL 93



 Score = 34.3 bits (77), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N+I  +K KS
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAIFSIKEKS 297


>gi|95928464|ref|ZP_01311212.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135735|gb|EAT17386.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Desulfuromonas acetoxidans DSM 684]
          Length = 174

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 13/171 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY F  +  +  F+ V  R  +++V  L  +    AGL+  LG+ F+AM+ +++YVGAV 
Sbjct: 12  FYAFMILTFMGGFMAVRSRMLMHAVLGLAVSLFGVAGLYFHLGSPFLAMMQILIYVGAVC 71

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  +  +M+ +   +++  +  R  +      +LA  L  C++ F+      + ++    
Sbjct: 72  IMIVLGVMLGNTPDQLSSDKLSRRNM------LLA--LGACSTGFVTLFIAIQQTKFAPA 123

Query: 128 GNNVEN-----IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              + +     IG+ L  +Y    E+   ILL ++IGAI+L    R ++ +
Sbjct: 124 AEKIGDMSIRFIGENLLFKYCLAFELISVILLTAIIGAIILARGGREEVAK 174


>gi|27464568|gb|AAO16138.1| NADH dehydrogenase subunit 6 [Alcyonium rudyi]
 gi|27464571|gb|AAO16140.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-B]
 gi|27464583|gb|AAO16148.1| NADH dehydrogenase subunit 6 [Sarcophyton trocheliophorum]
          Length = 147

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185
           +L  +           + L S  D
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQD 137


>gi|218129265|ref|ZP_03458069.1| hypothetical protein BACEGG_00842 [Bacteroides eggerthii DSM 20697]
 gi|317475237|ref|ZP_07934504.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           eggerthii 1_2_48FAA]
 gi|217988643|gb|EEC54963.1| hypothetical protein BACEGG_00842 [Bacteroides eggerthii DSM 20697]
 gi|316908690|gb|EFV30377.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 170

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++++ FY  +    + S L VT R  + S   L+F     AG++ LLG  F+  + ++VY
Sbjct: 5   LETIVFYFLAAFITVFSILTVTTRRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMVY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            G ++V ++F I++   + ++A   K+  FL      I  A ++V  +    F A  ++ 
Sbjct: 65  AGGIVVLYVFSILLTSGEGDIAGKLKRSKFLAGLGATIGGAIIVVFITLKHKFIATTDVV 124

Query: 123 RLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168
            L     N++ IG  + +  +Y Y  P E    +LL  ++G + L+ R R
Sbjct: 125 PLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGL-LIARKR 170


>gi|289474440|gb|ADC97831.1| NADH dehydrogenase subunit 6 [Corallium kishinouyei]
          Length = 154

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181
           ++M+GAI+L  +         H     RQD+  Q+ 
Sbjct: 115 VAMVGAILLAKQPNTPSLYDPHVETRSRQDLFLQIS 150


>gi|4588017|gb|AAD25954.1|AF087657_1 NADH-ubiquinone oxidoreductase chain 6 [Agrocybe aegerita]
          Length = 139

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%)

Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          SS + +T  NPI S+  LI  FV AA   +L+G  F+ +  +V+YVGA+ V FLFIIMM+
Sbjct: 16 SSVISITFSNPIISIIFLITTFVQAACYLILIGINFIGISYIVIYVGAIAVLFLFIIMMI 75

Query: 78 DIDIE 82
           I + 
Sbjct: 76 HIKLT 80


>gi|289474449|gb|ADC97837.1| NADH dehydrogenase subunit 6 [Corallium secundum]
          Length = 154

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGTHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181
           ++M+GAI+L  +         H     RQD+  Q+ 
Sbjct: 115 VAMVGAILLAKQPNTPSLYDSHVETRSRQDLFLQIS 150


>gi|312885981|ref|ZP_07745609.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603]
 gi|311301518|gb|EFQ78559.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603]
          Length = 183

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ + FY+  F+A+ S+ LV   +N + S+F         AGL++   A+FVA+  +V
Sbjct: 1   MNIEQILFYVMGFIALASALLVAASKNLVRSLFLFFVTLFALAGLYVFALADFVAVTQIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI--EVAEPRKK---RGFLGSFFIGILAAELIVCA------ 109
           +YVG V+V  LF  M+ + D+   + +   K    G L +  + +L   ++V A      
Sbjct: 61  IYVGGVLVLMLFAFMLSNKDVLNNLQQGNNKFISVGKLPALLVAVLFLIVLVNAIIKAQP 120

Query: 110 SNFMVFSAEGELSRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            +     A  +   ++  G+N + NIG  L T+Y  P E+   +L++++IGA  L  +  
Sbjct: 121 DSLPWIKASVQHDNVIKPGDNMLSNIGINLMTRYLLPFEVVSILLMMTLIGAAHLARKEE 180

Query: 169 RDI 171
             +
Sbjct: 181 HKL 183


>gi|290475909|ref|YP_003468804.1| NADH dehydrogenase I subunit J [Xenorhabdus bovienii SS-2004]
 gi|289175237|emb|CBJ82040.1| NADH dehydrogenase I chain J [Xenorhabdus bovienii SS-2004]
          Length = 175

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 65/104 (62%), Gaps = 5/104 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+   +AI+++  V+T  N ++++  LI + +  + +F  LGA F   + ++VY GA++
Sbjct: 5   FYVAGLVAILATLRVITHTNSVHALLYLITSLLALSVVFFSLGAYFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVC 108
           V F+F++MML++   V E  ++R +L    +IG  ILAA L++ 
Sbjct: 65  VLFVFVVMMLNLGKSVVE--QERAWLQLRVWIGPAILAAVLLIV 106


>gi|324309718|gb|ADY18499.1| NADH dehydrogenase subunit 6 [Phaeodactylum tricornutum]
          Length = 200

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 11/192 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV  ++ FY FS   +IS+ +VV  ++PI+S+  L+ +F+ ++ +  LL  EF+A++ ++
Sbjct: 1   MVGANVLFYFFSIFLVISAAIVVFSQHPIFSLLFLVLSFLTSSFILFLLECEFLALLFVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASN-------- 111
           VYVGA+ V FLF IMML+  +  +A+   K    G FF       L    SN        
Sbjct: 61  VYVGAIAVLFLFAIMMLEFKLHNLAKTLTKYIPAGIFFGIFSFFPLFQQVSNQFRTNFHS 120

Query: 112 -FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRR 169
               F+       L+    +V   G++LY+ +      +G ILL+ +IG + L    + +
Sbjct: 121 DSFYFNKYTNWLDLIDATTDVVVYGQILYSYFVLQFLFAGLILLVVLIGVVYLTNNWNNQ 180

Query: 170 DIKRQDISKQLE 181
            +  Q I KQL 
Sbjct: 181 KVTDQAIFKQLS 192


>gi|53712157|ref|YP_098149.1| NADH dehydrogenase I chain J [Bacteroides fragilis YCH46]
 gi|60680341|ref|YP_210485.1| putative NADH dehydrogenase chain J [Bacteroides fragilis NCTC
           9343]
 gi|253563805|ref|ZP_04841262.1| NADH dehydrogenase subunit I J [Bacteroides sp. 3_2_5]
 gi|265765488|ref|ZP_06093763.1| NADH dehydrogenase subunit I J [Bacteroides sp. 2_1_16]
 gi|52215022|dbj|BAD47615.1| NADH dehydrogenase I chain J [Bacteroides fragilis YCH46]
 gi|60491775|emb|CAH06533.1| putative NADH dehydrogenase chain J [Bacteroides fragilis NCTC
           9343]
 gi|251947581|gb|EES87863.1| NADH dehydrogenase subunit I J [Bacteroides sp. 3_2_5]
 gi|263254872|gb|EEZ26306.1| NADH dehydrogenase subunit I J [Bacteroides sp. 2_1_16]
 gi|301161874|emb|CBW21418.1| putative NADH dehydrogenase chain J [Bacteroides fragilis 638R]
          Length = 170

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +   I  S L VT +  + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   LTLETVVFYFLAVFIIAMSILTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118
           VY G ++V ++F I++   + + A   K+  FL      I+ A L+  +  ++  V +++
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDRAAHLKRSKFLAGLVTTIIGAILVLFITLTHKFVPTSD 122

Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168
            E   +     +++ IG  L +  +Y Y  P E    +LL  ++G + L+ R R
Sbjct: 123 PEPVEI-----SIKTIGHALLSSGKYGYVLPFEAVSILLLACIVGGL-LIARKR 170


>gi|258651225|ref|YP_003200381.1| NADH dehydrogenase subunit J [Nakamurella multipartita DSM 44233]
 gi|258554450|gb|ACV77392.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nakamurella
           multipartita DSM 44233]
          Length = 293

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 30/194 (15%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ + +A++ +  +V  ++ ++S   L+   ++   L++   AEF+  + ++VY GA++
Sbjct: 30  FWILAPLAVLGAIGMVFSKSAVHSALWLVLTMLSLGCLYINQNAEFLGFVQIIVYTGAIM 89

Query: 68  VFFLFIIMML-----DIDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNFM- 113
           + FLF++M+      D   EV   RK+R        GF+     G+L A   V A     
Sbjct: 90  MLFLFVLMLTGRDSGDSTFEVL--RKQRIVAIVLGIGFVVLLVTGLLRALKAVPAVGLSG 147

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR----R 169
            ++  G L            I ++L+T Y +P E++  +L+ +  GA+VL    +    R
Sbjct: 148 AYADRGPLG----------AIAELLFTDYLFPFELTSALLITAATGAMVLTHIEKAPGER 197

Query: 170 DIKRQDISKQLESN 183
             + Q + +++ S+
Sbjct: 198 KSQGQRVRERMRSD 211


>gi|292385426|gb|ADE21993.1| NADH dehydrogenase subunit 6 [Ecklonia radiata]
          Length = 286

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 10 LFSFMAIISSFL---VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          +F F+A +   L   V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+
Sbjct: 6  IFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAI 65

Query: 67 IVFFLFIIMMLDID-IEVAEPRKKRGFL 93
           V  LF+ MMLD+  IE     KK+  L
Sbjct: 66 AVLELFVDMMLDVKAIERPWSSKKKRLL 93


>gi|27464547|gb|AAO16124.1| NADH dehydrogenase subunit 6 [Alcyonium digitatum]
          Length = 147

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYINNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185
           +L  +           + L S  D
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQD 137


>gi|237714288|ref|ZP_04544769.1| NADH dehydrogenase subunit I [Bacteroides sp. D1]
 gi|237719848|ref|ZP_04550329.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4]
 gi|262408335|ref|ZP_06084882.1| NADH dehydrogenase subunit I [Bacteroides sp. 2_1_22]
 gi|293373610|ref|ZP_06619958.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           ovatus SD CMC 3f]
 gi|294646449|ref|ZP_06724090.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           ovatus SD CC 2a]
 gi|294809421|ref|ZP_06768126.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298480347|ref|ZP_06998545.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. D22]
 gi|229445780|gb|EEO51571.1| NADH dehydrogenase subunit I [Bacteroides sp. D1]
 gi|229451117|gb|EEO56908.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4]
 gi|262353887|gb|EEZ02980.1| NADH dehydrogenase subunit I [Bacteroides sp. 2_1_22]
 gi|292631435|gb|EFF50065.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           ovatus SD CMC 3f]
 gi|292638220|gb|EFF56597.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           ovatus SD CC 2a]
 gi|294443357|gb|EFG12119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295086640|emb|CBK68163.1| NADH dehydrogenase subunit J [Bacteroides xylanisolvens XB1A]
 gi|298273628|gb|EFI15191.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. D22]
          Length = 170

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 15/175 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI---GILAAELIVCASNFMVFSAE 118
           Y G ++V ++F I++   + + AE  K+   L   F    G+     I    +FM     
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKAKRSKVLAGLFTMIAGLAIILFITLKHDFM----- 118

Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRR 169
            + + L  +  ++  IG  L +  +Y Y  P E    +LL  +IG I  M+  +R
Sbjct: 119 -QTANLAPQEISIHAIGNALLSSDKYGYVLPFEAVSILLLACIIGGI--MIARKR 170


>gi|292385477|gb|ADE22031.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
          Length = 311

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDV 78


>gi|291004460|ref|ZP_06562433.1| NADH dehydrogenase subunit J [Saccharopolyspora erythraea NRRL
           2338]
          Length = 328

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F+    +A++ +  +V  RN ++S   L+   +    L++   A F+    ++VY 
Sbjct: 27  EAVVFWTLGPLALLGAMGMVFARNAVHSALWLVLTMLCLGVLYMAQSAPFLGFTQIIVYT 86

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFS 116
           GA+++ FLF++MM+  D     +EV   R +R  L +   G+  A L+V   A +     
Sbjct: 87  GAIMMLFLFVLMMVGRDSSDSVVEVL--RGQR--LAAALAGVGFAVLLVTGLARSLTDVP 142

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
               L+    +G     +G++++T Y +P E++  +L+ + +GA+VL    +   KR
Sbjct: 143 VAAPLNPWSPQGGGAGGLGRLIFTDYLFPFELTSALLITAALGAMVLAYGGKGRAKR 199


>gi|134103321|ref|YP_001108982.1| NADH dehydrogenase subunit J [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915944|emb|CAM06057.1| NADH dehydrogenase I chain J [Saccharopolyspora erythraea NRRL
           2338]
          Length = 329

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F+    +A++ +  +V  RN ++S   L+   +    L++   A F+    ++VY 
Sbjct: 28  EAVVFWTLGPLALLGAMGMVFARNAVHSALWLVLTMLCLGVLYMAQSAPFLGFTQIIVYT 87

Query: 64  GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFS 116
           GA+++ FLF++MM+  D     +EV   R +R  L +   G+  A L+V   A +     
Sbjct: 88  GAIMMLFLFVLMMVGRDSSDSVVEVL--RGQR--LAAALAGVGFAVLLVTGLARSLTDVP 143

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
               L+    +G     +G++++T Y +P E++  +L+ + +GA+VL    +   KR
Sbjct: 144 VAAPLNPWSPQGGGAGGLGRLIFTDYLFPFELTSALLITAALGAMVLAYGGKGRAKR 200


>gi|197245037|dbj|BAG69143.1| NADH dehydrogenase subunit 6 [Aureophycus aleuticus]
          Length = 311

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+  
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVK- 79

Query: 82 EVAEP---RKKR 90
           +  P   +KKR
Sbjct: 80 AIESPWFAKKKR 91


>gi|58045490|gb|AAW65072.1| NADH dehydrogenase subunit 6 [Lessonia flavicans]
 gi|292385473|gb|ADE22028.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
 gi|292385481|gb|ADE22034.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
          Length = 311

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
          V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+
Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDV 78


>gi|256831788|ref|YP_003160515.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Jonesia
           denitrificans DSM 20603]
 gi|256685319|gb|ACV08212.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Jonesia
           denitrificans DSM 20603]
          Length = 282

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 80/150 (53%), Gaps = 7/150 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F+  + + ++++  ++  R  +++  S++F  ++ A L++   A F+ +  +VVY 
Sbjct: 6   EAVLFWSLAPLMVLAAMGLLFARKAVHATISVVFVMISLAVLYVANEAPFLGIAQVVVYT 65

Query: 64  GAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           GA+++ FLF+IM++ +   D  V   R +R F+G  F G LA  L+       V    G 
Sbjct: 66  GAIMMLFLFVIMLVGVGASDSLVETVRGQR-FIGVLFAGGLAIILLAFLGRLTVGPGVGH 124

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISG 150
            + +    +N   I +VL   + +PLE+ G
Sbjct: 125 EATVA---DNPTAIARVLLGNFVFPLELVG 151


>gi|294140407|ref|YP_003556385.1| NADH dehydrogenase I subunit J [Shewanella violacea DSS12]
 gi|293326876|dbj|BAJ01607.1| NADH dehydrogenase I, J subunit [Shewanella violacea DSS12]
          Length = 294

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 48/75 (64%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M  + F + + +AIIS+ L V+  N ++++  L+   +  A +F LLG+ F A + ++VY
Sbjct: 1  MIDIIFCITAAVAIISALLTVSAHNVVHALLYLVTMMLAIALIFFLLGSPFAAALQIIVY 60

Query: 63 VGAVIVFFLFIIMML 77
           GAV+V F+F+ MML
Sbjct: 61 AGAVMVLFVFVTMML 75


>gi|161784246|ref|YP_001595562.1| NADH dehydrogenase ND6 subunit [Lemna minor]
 gi|221272328|sp|A9L9F0|NU6C_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|88696824|gb|ABD48549.1| NADH dehydrogenase ND6 subunit [Lemna minor]
          Length = 177

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 20/149 (13%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    +  +  ++LL + FVA   L++YVGA+ V  LF +M +       +
Sbjct: 30  TNPIYSAFSLGLVLICVSLFYILLNSYFVAAAQLLIYVGAINVLILFAVMFM-------K 82

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR----LVFKGN---------NVE 132
             +    L  + +G     L+  +  F++ S   + S        K N         NV+
Sbjct: 83  GSEYSNDLNLWTVGDGVTSLVCTSILFLLISTISDTSWYGIIWTTKANHIIEQDLISNVQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|27464586|gb|AAO16150.1| NADH dehydrogenase subunit 6 [Lobophytum pauciflorum]
          Length = 147

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 17/150 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLMLR---------HRRDIK-RQDISKQLE 181
           +L  +         H   ++ RQD+  Q+ 
Sbjct: 114 LLAKQPNSPFLYNFHGESLRSRQDLFLQIS 143


>gi|238061175|ref|ZP_04605884.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. ATCC 39149]
 gi|237882986|gb|EEP71814.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. ATCC 39149]
          Length = 190

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 15/180 (8%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           MA+ +  LVVT R+ + +   L+      AGL+L+L AE VA + +++YVGAV+V  LF 
Sbjct: 1   MAVGAGALVVTTRHLVRAGLYLVVCLGALAGLYLVLTAELVAWVQVLIYVGAVVVLLLFA 60

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL-VFKGNNVE 132
           +M+    I  ++   + G+  +   G     L     +   +      +R+ + +    E
Sbjct: 61  VMLTRAPIGASDDLDRPGWPAALIGGGTGLGLAALLVDAFRW------TRVDLPEPGTAE 114

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD-----ISKQLESNPDNS 187
            +G+ ++  +  P E+   +LL +++GA+VL    R DI R+      + K     PD +
Sbjct: 115 RLGEQVFRTWVLPFEVLSVLLLAALVGAVVL---SRPDIGRRPADGRSLGKAGGPGPDAA 171


>gi|313836209|gb|EFS73923.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL037PA2]
 gi|314927644|gb|EFS91475.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL044PA1]
 gi|314971357|gb|EFT15455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL037PA3]
 gi|328906294|gb|EGG26069.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium sp. P08]
          Length = 284

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 99/208 (47%), Gaps = 14/208 (6%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + + ++ ++V  R P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVCAALVIVFARKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D   +     +G   +  +  LA    LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAIVAALAFVVLLILAVGNAVTTGV 133

Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
            G    +         G+NV+ + ++++T+Y    E +  +L+ + +G +VL   H    
Sbjct: 134 IGTDHPMGLGQANAAGGDNVKLLAELVFTKYVIVFEATSALLITAAVGTMVLA--HGEAD 191

Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199
           K++    Q E   D   V  +  S  G+
Sbjct: 192 KKK---TQRERVTDRMAVYAQHGSHPGV 216


>gi|189468081|ref|ZP_03016866.1| hypothetical protein BACINT_04475 [Bacteroides intestinalis DSM
           17393]
 gi|189436345|gb|EDV05330.1| hypothetical protein BACINT_04475 [Bacteroides intestinalis DSM
           17393]
          Length = 171

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 14/171 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +    + S L VT R  + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   ITLETVVFYFLAVFITVCSILTVTTRRMVRSATYLLFTLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMML----DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           VY G ++V ++F I++     D  I+  +  K    LG+   G +    I     F+V +
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDRTIDKLKRSKLMAGLGATVGGAIIVLFITLKHKFIVTT 122

Query: 117 AEGELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVL 163
               L        N++ IG  + +  +Y Y  P E    +LL  ++G +V+
Sbjct: 123 DLAPLE------INIKTIGHSMLSSDKYGYLLPFEAVSILLLACIVGGLVI 167


>gi|313183964|ref|YP_004021818.1| NADH-plastoquinone oxidoreductase subunit 6 [Equisetum arvense]
 gi|281371684|gb|ADA63617.1| NADH-plastoquinone oxidoreductase subunit 6 [Equisetum arvense]
          Length = 200

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV++ N IYS F L F F+  A L+L L A+F+A   +++YVGAV V  +F +M
Sbjct: 20  ILGSLGVVSLSNIIYSAFLLGFVFICIALLYLTLNADFLAAAQILIYVGAVNVLIVFAVM 79

Query: 76  MLDIDIEVAEPRKKR-------GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
           +++   E+    K             S F+ +    L    SN  ++S +  ++ L    
Sbjct: 80  LINKPKEINTLEKWNISNNISLLLCTSLFVSLSFTILNTNWSN--LYSIQHSVNILDQMP 137

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
           +N+  IG  L T++  P E+   +LL+++IGAI +  R    I+  D S+ L+S  +
Sbjct: 138 SNIRLIGNNLLTKFLIPFELLSILLLVALIGAITIA-RRAEFIETGD-SESLKSKEE 192


>gi|219848529|ref|YP_002462962.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Chloroflexus aggregans DSM 9485]
 gi|219542788|gb|ACL24526.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Chloroflexus aggregans DSM 9485]
          Length = 217

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 49/75 (65%)

Query: 2  VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
          V+  + F + +   ++++ +VV+VRN I+S   LI  F     L++LL AEF+A++ ++V
Sbjct: 3  VVVQIVFGIIALFILVAAVMVVSVRNVIHSALWLIACFFGVGALYMLLQAEFLAVVQVLV 62

Query: 62 YVGAVIVFFLFIIMM 76
          YVGAV V  LF IM+
Sbjct: 63 YVGAVSVLILFAIML 77


>gi|81230387|ref|YP_398774.1| NADH dehydrogenase subunit 6 [Aspergillus tubingensis]
 gi|77157975|gb|ABA62003.1| NADH dehydrogenase subunit 6 [Aspergillus tubingensis]
          Length = 217

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 37/180 (20%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT-LVVYVGAVIVFFLFIIMMLDIDIE-- 82
           RNPI +V  LI  FV+ AG+ +L+G +++ + + ++V VGA    FL I+M++++ I   
Sbjct: 38  RNPIVAVLFLIGLFVDIAGVLILVGIDYIGLSSYILVNVGAASTLFLLILMLINMRISEL 97

Query: 83  VAEPRKKRGF------LGSFFIGILAAE------LIVCASN--------------FMVFS 116
           V+E  +   +      L  F IG +         ++  +SN                +  
Sbjct: 98  VSETNRDTPWAVITVSLFYFIIGQVTPSNFTDNTIVTSSSNSFSEVYDLQVDNEILNIVD 157

Query: 117 AEGELSRLVFKGNNVE--------NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            + E +    K  +           IG ++YT Y+  L IS  ILL+ M+GAIV+ ++ +
Sbjct: 158 LQQETASASSKSGDTSLVELPHLGGIGNIMYTNYSLWLIISSVILLVGMVGAIVITIKQK 217


>gi|329765839|ref|ZP_08257405.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137682|gb|EGG41952.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 170

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 17/184 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F   S + I S+   + +R+ IY   +L+      AG FLLL + FVAM  L VY
Sbjct: 1   MADVTFLALSVITIGSAIAALEMRSLIYGSIALMGTLGGIAGFFLLLDSPFVAMFQLAVY 60

Query: 63  VGAVIVFFLFIIMMLDIDI---EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VG++ V  LF +M++  ++   ++ + R+K       F+GI    + + A   ++  +  
Sbjct: 61  VGSIAVLILFTVMLVKRELIFKKIEDKRRK-------FVGIALMLVFMVALGSIIMDSGI 113

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           +         +  NIG    T Y   L +   IL  S+ GA+VL        +R+D+  +
Sbjct: 114 KSITTNEPAVDFRNIGADFLTYYWPALILMALILTGSVTGALVLA-------RREDVENE 166

Query: 180 LESN 183
             ++
Sbjct: 167 QRTD 170


>gi|289474446|gb|ADC97835.1| NADH dehydrogenase subunit 6 [Corallium sp. USNM 1075800]
          Length = 154

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 21/160 (13%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVLM--------------LRHRRDIKRQDISKQL 180
           ++M+GAI+L               +R R+D+  Q   K L
Sbjct: 115 VAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRKHL 154


>gi|291298807|ref|YP_003510085.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568027|gb|ADD40992.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Stackebrandtia nassauensis DSM 44728]
          Length = 256

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + + +  +  +V  R+ ++S   L    +    +++L    F+  + ++VY 
Sbjct: 16  EAITFWILAPIILGGAIGMVLARSAVHSALLLACTMLGLGVIYMLQSGPFIGFVQIIVYT 75

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVC---ASNFMVFSAEG 119
           GA+++ FLF+IM++  D + +     RG  + +  +GI  A L++C   A      SA G
Sbjct: 76  GAIMMLFLFVIMLVGRDSKDSLLETLRGQRIAAIGLGIGMA-LLLCTGLARGVGAVSAVG 134

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            L      G NV+ I   L+T+Y +  E++  +L+ + +GA+VL   H    K   + ++
Sbjct: 135 -LDEANANG-NVKGIAAELFTKYVFAFEVTSALLITAAVGAMVLA--HVEKAKEDKLGQK 190

Query: 180 LESN 183
             S 
Sbjct: 191 KSSR 194


>gi|170727212|ref|YP_001761238.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Shewanella
           woodyi ATCC 51908]
 gi|169812559|gb|ACA87143.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Shewanella
           woodyi ATCC 51908]
          Length = 205

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 18/199 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F   + + +IS+ L VT  N ++++  L+   +  A +F L G+ F A + ++VY
Sbjct: 1   MIEIIFITTAIVCVISALLTVTAHNAVHALLYLVTMMIAIALIFFLFGSPFAAALQIIVY 60

Query: 63  VGAVIVFFLFIIMMLD------IDIEVA-EPRKKRGFL--------GSFFIGILAAELIV 107
            GAV+V F+F+ MML       ID +     +  +G L            IGI   +   
Sbjct: 61  AGAVMVLFVFVTMMLHQGEQSIIDEKTLFSLKTAKGPLLLAVILVIELLLIGITPLDNSP 120

Query: 108 CASNFMVFSAEGE---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
             +     ++E +    S       +V+++ K LY  Y   + I+  +LL S+I AI + 
Sbjct: 121 SLTPLNTVNSESQQLSTSSKTPSLTSVKSLAKQLYGPYKLLVIIAAMLLLSSLIAAIHIA 180

Query: 165 LRHRRDIKRQDISKQLESN 183
            +  R  +   ++   ES 
Sbjct: 181 RKSSRLTENSPVNGDSESK 199


>gi|167764934|ref|ZP_02437055.1| hypothetical protein BACSTE_03326 [Bacteroides stercoris ATCC
           43183]
 gi|167697603|gb|EDS14182.1| hypothetical protein BACSTE_03326 [Bacteroides stercoris ATCC
           43183]
          Length = 170

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F++L +F+++ S  L VT R  + S   L+F     AG++ LLG  F+  + ++VY G +
Sbjct: 10  FYFLAAFISVFS-ILTVTTRRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMVYAGGI 68

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V ++F I++   + ++A   K+  FL      +  A +++  +    F A  ++  L  
Sbjct: 69  VVLYVFSILLTSGEGDMAAKLKRSKFLAGLGATVAGAVIVLFITLKHKFIATTDIEPLEV 128

Query: 127 KGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168
              N++ IG  + +  +Y Y  P E    +LL  ++G + L+ R R
Sbjct: 129 ---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGL-LIARKR 170


>gi|198276156|ref|ZP_03208687.1| hypothetical protein BACPLE_02345 [Bacteroides plebeius DSM 17135]
 gi|198270968|gb|EDY95238.1| hypothetical protein BACPLE_02345 [Bacteroides plebeius DSM 17135]
          Length = 171

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 11/172 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + FY+     I  S L VT    + +   L+F  +    ++ +LG  F++ + L+VY
Sbjct: 5   LQEIVFYIVGACIIACSILAVTTGKILRAATYLLFVLLGTGAIYGILGYTFLSAVQLMVY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            G ++V ++F I++   D  +     +   +      ++ A L++    F+V +  G   
Sbjct: 65  AGGIVVLYVFSILLTQSDKNMKYKINRAKLISVLLTIVIGAALVL----FLVMT-NGFAL 119

Query: 123 RLVFKGNN--VENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168
            L+ +G    VENIG  L      Q+  P E+   +LL  MIGAI++  + +
Sbjct: 120 NLIPQGVELPVENIGHALIGTGKYQFVLPFEVVSVLLLACMIGAILIARKQK 171


>gi|308275209|emb|CBX31806.1| hypothetical protein N47_N26310 [uncultured Desulfobacterium sp.]
          Length = 165

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 76/143 (53%), Gaps = 4/143 (2%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           +FL V  +  ++++  L  A     G++L LG++FVAM+ L++YVGA+ + ++F I ML 
Sbjct: 17  AFLAVIPKKIVHNILGLALAMFGITGVYLYLGSQFVAMMQLLIYVGAICMTYIFAI-MLS 75

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
             +E   PR+ +            + ++      M+ S + E      +  +++ +G++L
Sbjct: 76  PPLEKELPRRNK---LKVITATAVSSIVFIVMVKMILSLKIEPIADATRDWSIKTLGQLL 132

Query: 139 YTQYAYPLEISGFILLLSMIGAI 161
            T+Y    E+   +L +++IG+I
Sbjct: 133 LTRYFLVFELISLLLAIAIIGSI 155


>gi|284009328|emb|CBA76494.1| NADH-quinone oxidoreductase chain J [Arsenophonus nasoniae]
          Length = 177

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 52/81 (64%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY+   +AI+++  V+T  NP++++  LI + +  A +F  +G+ F   + ++VY GA++
Sbjct: 5  FYVAGLVAILATLRVITHTNPVHALLYLIVSLLVLAIVFFAVGSYFAGALEIIVYAGAIM 64

Query: 68 VFFLFIIMMLDIDIEVAEPRK 88
          V F+F++MML++   V +  +
Sbjct: 65 VLFVFVVMMLNLGKSVVDQER 85


>gi|261416520|ref|YP_003250203.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|261372976|gb|ACX75721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|302327558|gb|ADL26759.1| NADH-quinone oxidoreductase, J subunit [Fibrobacter succinogenes
          subsp. succinogenes S85]
          Length = 180

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 51/73 (69%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          ++F + + +A+ S+  V+  R+P+Y   SL+ + V+ AG++ LLG+ F+ ++ ++VY GA
Sbjct: 5  IYFIVLAVIAVGSAVCVLLSRHPLYGALSLVASMVSLAGIYGLLGSPFLGVVQIMVYAGA 64

Query: 66 VIVFFLFIIMMLD 78
          +++   F+IM+L+
Sbjct: 65 IMMLLTFVIMVLN 77


>gi|261886062|ref|ZP_06010101.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 164

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 23/177 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   F  FS  AI+ S  ++  + PI+   SLI   V+ AGL+LLL A+ + +I +VVY
Sbjct: 1   MELFLFINFSLFAILGSLGLILFKAPIHGALSLIVTLVSIAGLYLLLFAKTLFLIQIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--------GILAAELIVCASNFMV 114
            GA++V  +F++M  +I  +    + K     SFF+         IL  E+    S+F +
Sbjct: 61  AGAIMVLSVFVMMFFNIKSDTLFVKLKP---KSFFVIIPPTVIFAILLDEIWKLPSDFAI 117

Query: 115 FSAE-GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              + GE          ++ +G  L+T +    E    +L  ++IG +V +L+ + +
Sbjct: 118 APLDFGE----------IQPLGFYLFTNWGLSFEAISLLLTAALIG-VVAILKGKNN 163


>gi|329957593|ref|ZP_08298068.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           clarus YIT 12056]
 gi|328522470|gb|EGF49579.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           clarus YIT 12056]
          Length = 170

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 8/170 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++++ FY  +    + S L VT +  + S   L+F     AG++ LLG  F+  + ++VY
Sbjct: 5   LETIVFYFLAAFITVFSILTVTTKRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMVY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            G ++V ++F I++   + ++A   K+  FL      +  A +++  +    F A  +++
Sbjct: 65  AGGIVVLYVFSILLTSGEGDMAGKLKRSKFLAGLGTTVAGAVIVLFITLKHKFIATTDVA 124

Query: 123 RLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168
            L     N++ IG  + +  +Y Y  P E    +LL  ++G + L+ R R
Sbjct: 125 PLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGL-LIARKR 170


>gi|27464589|gb|AAO16152.1| NADH dehydrogenase subunit 6 [Xenia sp. CSM-2002]
 gi|27464592|gb|AAO16154.1| NADH dehydrogenase subunit 6 [Asterospicularia randalli]
          Length = 154

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 7/122 (5%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ + 
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVIIASLVLLVAMIGAI 113

Query: 162 VL 163
           +L
Sbjct: 114 LL 115


>gi|160891175|ref|ZP_02072178.1| hypothetical protein BACUNI_03622 [Bacteroides uniformis ATCC 8492]
 gi|270294466|ref|ZP_06200668.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481071|ref|ZP_07940150.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           sp. 4_1_36]
 gi|156859396|gb|EDO52827.1| hypothetical protein BACUNI_03622 [Bacteroides uniformis ATCC 8492]
 gi|270275933|gb|EFA21793.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902784|gb|EFV24659.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           sp. 4_1_36]
          Length = 170

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +    + S L VT    + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   ITLETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   + +V E  K+  FL      +  A ++V  +    F A  +
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDVIEKLKRSRFLAGLGATVGGAIIVVFITLKHKFIATTD 122

Query: 121 LSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168
           +  L     N++ IG  + +  +Y Y  P E    +LL  ++G + L+ R R
Sbjct: 123 VEPLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGL-LIARKR 170


>gi|325610525|gb|ADZ36471.1| NADH dehydrogenase subunit 6 [Franklinia alatamaha]
          Length = 176

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 22/163 (13%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F+ I+SS  V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F
Sbjct: 17  FVLILSSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIF 76

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--K 127
            +M ++          K   L +   GI +   +VC S F+       +     +++  K
Sbjct: 77  AVMFMN-----GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATK 128

Query: 128 GN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            N         N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 129 SNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|163847541|ref|YP_001635585.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus aurantiacus J-10-fl]
 gi|222525391|ref|YP_002569862.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus sp. Y-400-fl]
 gi|163668830|gb|ABY35196.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449270|gb|ACM53536.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           sp. Y-400-fl]
          Length = 216

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 11/184 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F + +   ++S+ +VV+VRN I++   LI  F     L++LL AEF+A++ +++YVG
Sbjct: 6   QIVFGVIALFILVSAAMVVSVRNVIHAALWLIACFFGVGALYMLLEAEFLAVVQVLIYVG 65

Query: 65  AVIVFFLFIIMML-DIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVFSAE 118
           AV V  LF IM+   I  E       R           F  ++A  LI    N       
Sbjct: 66  AVSVLILFAIMLTRQITGEGIRQLTTRWPVVLAIAVLLFATVMAPTLINQQWNVPPAPPI 125

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDIS 177
           G    +         +G+    ++    ++ G +L +++IGAIV+    R R  K   ++
Sbjct: 126 GTPEPIAGPA----ELGRGFVNEFLLQFQVVGVLLTVALIGAIVIAYEERARRRKVLTLA 181

Query: 178 KQLE 181
           ++LE
Sbjct: 182 EELE 185


>gi|289474467|gb|ADC97849.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora]
          Length = 154

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 7/129 (5%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKADYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +     ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYISDPVIGYRTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVL 163
           ++M+GAI+L
Sbjct: 115 VAMVGAILL 123


>gi|289474458|gb|ADC97843.1| NADH dehydrogenase subunit 6 [Paracorallium sp. USNM 1089600]
          Length = 154

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 21/160 (13%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVYYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVLM--------------LRHRRDIKRQDISKQL 180
           ++M+GAI+L               +R R+D+  Q   K L
Sbjct: 115 VAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRKHL 154


>gi|27544895|ref|NP_775410.1| NADH dehydrogenase subunit 6 [Lecanicillium muscarium]
 gi|27450727|gb|AAO14669.1|AF487277_15 NADH dehydrogenase subunit 6 [Lecanicillium muscarium]
          Length = 214

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 30/194 (15%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  + S +A++    V+  +NPI S+  LI  F + +   +L G  F+    L+VY+GAV
Sbjct: 21  FLDILSVIAVLFGITVIVNKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 80

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFMVFSA 117
            + FLFI+M+++I     +         + FIGIL            L +  +N+++ S 
Sbjct: 81  SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 140

Query: 118 EG----------ELSRLVFKGNN-----------VENIGKVLYTQYAYPLEISGFILLLS 156
                       + S ++F  +N           +  IG +LYT Y   L +S  ILLL+
Sbjct: 141 NYNNVLPAVHNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 200

Query: 157 MIGAIVLMLRHRRD 170
           M+GAI++ ++   +
Sbjct: 201 MVGAIIITIKQENN 214


>gi|320449681|ref|YP_004201777.1| NADH-quinone oxidoreductase subunit J [Thermus scotoductus SA-01]
 gi|320149850|gb|ADW21228.1| NADH-quinone oxidoreductase, subunit J [Thermus scotoductus
          SA-01]
          Length = 179

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          +  LVVT++N I++  +LI  F+  AGL++ L A F+  I ++VY GA++V FLF+IM+L
Sbjct: 15 TGVLVVTLKNAIHAALALIGNFLVLAGLYVALEARFLGFIQIIVYAGAIVVLFLFVIMLL 74


>gi|226315024|ref|YP_002774920.1| NADH dehydrogenase subunit J [Brevibacillus brevis NBRC 100599]
 gi|226097974|dbj|BAH46416.1| NADH-quinone oxidoreductase chain J [Brevibacillus brevis NBRC
           100599]
          Length = 169

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ S + I  +  +++    ++ V SL   F++ AGLF+LLGAEFV +  ++VY GA+ 
Sbjct: 8   FFILSLLTIGGAVFMISFTRVVHMVISLGVTFISIAGLFVLLGAEFVGVAQILVYSGAIS 67

Query: 68  VFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +  LF IM+   D          K R  L   F+ +L   L     N    +        
Sbjct: 68  ILMLFGIMLTKHDANDEGTGRTWKNRFIL--LFVIVLFGLLFWGVQNTPWPAPPPPADAP 125

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           V   NN + IG  ++T++  P E+   +LL++++GAI++  +   +
Sbjct: 126 V---NNAKEIGIEVFTKFVIPFELLSVLLLVALVGAIIMAKKEGDN 168


>gi|145592967|ref|YP_001157264.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora
           tropica CNB-440]
 gi|145302304|gb|ABP52886.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora
           tropica CNB-440]
          Length = 187

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S  L V  R+ + +   L+      AG++L+L AE VA + +++YVGAV+V  LF +M+ 
Sbjct: 18  SGALAVATRHLVRAGLYLVVCLAAVAGMYLVLTAELVAWVQVLIYVGAVVVLLLFAVMLT 77

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKV 137
              I  +    + G+  +   G     L     +   +S     S  +    + E IG+ 
Sbjct: 78  RAPIGASTDLDRPGWPAALIGGGTGLGLAALLVDAYRWS-----SVPLPTAGSAERIGEQ 132

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187
           ++  +  P E+   +LL +++GAI+L    R DI R  +     S  D +
Sbjct: 133 IFGSWVLPFEVLSVLLLAALVGAIIL---SRPDIGRSPMDPAGVSAADEA 179


>gi|303247485|ref|ZP_07333757.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           fructosovorans JJ]
 gi|302491181|gb|EFL51073.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           fructosovorans JJ]
          Length = 171

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    F  ++ + +    L VT  + + ++  L+ A    AGL+LLL A+FVA++ ++
Sbjct: 4   MYLGQFAFAFYTLIVLAGGGLAVTAASLVRAMLGLVVALFGVAGLYLLLLADFVALMQIL 63

Query: 61  VYVGAVIVFFLFIIMML--DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           +YVGAV V   F IM+     D   AE     G L +    ++ A ++V      + +  
Sbjct: 64  IYVGAVTVLIFFAIMLTRAAADGGEAEGPGAAGILRAIPAFLVPAGILVP-----LLAVY 118

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +     K  + + +G  L   Y    E+   +LL +M GA++L    R  
Sbjct: 119 GAVGFPTPKNVSPDQLGAGLLGPYTLAFELISVVLLAAMAGAVILAFEKREP 170


>gi|156960020|gb|ABU98488.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 7/137 (5%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ +    +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L  +  
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 169 RDIKRQDISKQLESNPD 185
                   S+ L S  D
Sbjct: 114 SPFLYNSHSESLRSKQD 130


>gi|289474464|gb|ADC97847.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora]
 gi|289474470|gb|ADC97851.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora]
 gi|289474491|gb|ADC97865.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora]
          Length = 154

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 7/129 (5%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +     ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYISDPVIGYRTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVL 163
           ++M+GAI+L
Sbjct: 115 VAMVGAILL 123


>gi|163751854|ref|ZP_02159069.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Shewanella
          benthica KT99]
 gi|161328270|gb|EDP99432.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Shewanella
          benthica KT99]
          Length = 208

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 48/76 (63%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M  + F + + +AIIS+ L V+  N ++++  L+   +  A +F +LG+ F A + ++VY
Sbjct: 1  MIDIIFCISAAVAIISALLTVSAHNVVHALLYLVTMMLAIALIFFMLGSPFAAALQIIVY 60

Query: 63 VGAVIVFFLFIIMMLD 78
           GAV+V F+F+ MML 
Sbjct: 61 AGAVMVLFVFVTMMLH 76


>gi|329962488|ref|ZP_08300488.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           fluxus YIT 12057]
 gi|328530044|gb|EGF56932.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           fluxus YIT 12057]
          Length = 170

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++++ FY  +    + S L VT    + S   L+F     AG++ LLG  F+  + ++VY
Sbjct: 5   LETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMVY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            G ++V ++F I++   + ++A   K+  FL      I  A +++  +    F A  ++ 
Sbjct: 65  AGGIVVLYVFSILLTSGEGDIAGKLKRSKFLAGLGTTIGGAVIVLFITLNHKFIATTDVE 124

Query: 123 RLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168
            L     N++ IG  + +  +Y Y  P E    +LL  ++G + L+ R R
Sbjct: 125 PLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGL-LIARKR 170


>gi|11465931|ref|NP_050064.1| NADH dehydrogenase subunit 6 [Pedinomonas minor]
 gi|4378775|gb|AAD19673.1| NADH dehydrogenase subunit 6 [Pedinomonas minor]
          Length = 190

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 9/171 (5%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82
           +  +N I     ++ +F+ A  ++LL    F+ +I ++VYVGAV+V FLF+IMM+ + I 
Sbjct: 24  ILTKNAILVALYIVGSFILAGLIYLLANFPFLGVILILVYVGAVVVLFLFVIMMIPLRIV 83

Query: 83  VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGKVLYT 140
             E      F   F   +L   L+   S+F + S   E   L+F+   N  + +  ++Y 
Sbjct: 84  FFENNFSIFFFNYFLWTVL---LVFFFSSFDILSTSFE---LIFQSRTNLFQLLALIIYL 137

Query: 141 QYAYPLEISGFILLLSMIGAI-VLMLRHRRDIKRQDISKQLESNPDNSIVM 190
              +    + F+L +SMIGAI +   +      ++ I+ QL  N  +  V+
Sbjct: 138 DNVWYFLFAAFLLTISMIGAISITQTKSVNKNFKEIINIQLNKNYKSDFVL 188


>gi|139390402|ref|YP_001122999.1| NADH dehydrogenase ND6 [Aethionema cordifolium]
 gi|221272305|sp|A4QJG9|NU6C_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286195|dbj|BAF49824.1| NADH dehydrogenase ND6 [Aethionema cordifolium]
          Length = 176

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 10/148 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV   NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D 
Sbjct: 26  VVLFPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAITVLIIFAVMFMN-DS 84

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVC-ASNFMVFSAEG-----ELSRLVFKG--NNVEN 133
           E +     R  +G     ++   ++    S  +  S  G      L++++ +   +N + 
Sbjct: 85  EYST-DLNRWTVGDGITSVICTTILFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQ 143

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAI 161
           IG  L T +  P E+   ILL+++IGAI
Sbjct: 144 IGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|269977607|ref|ZP_06184574.1| NADH dehydrogenase subunit j [Mobiluncus mulieris 28-1]
 gi|307701312|ref|ZP_07638333.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mobiluncus
           mulieris FB024-16]
 gi|269934210|gb|EEZ90777.1| NADH dehydrogenase subunit j [Mobiluncus mulieris 28-1]
 gi|307613473|gb|EFN92721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mobiluncus
           mulieris FB024-16]
          Length = 352

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++F  + S  A++    V   R  +++   ++   ++ AG++  LGAEF+  + +VVY 
Sbjct: 21  QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++  LF+IM++ +   +  PR+         + +  A  I+        +    +  
Sbjct: 81  GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                +N   I   +  QY +P+E+   +L+++ +GA+ L
Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTL 179


>gi|328950040|ref|YP_004367375.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Marinithermus hydrothermalis DSM 14884]
 gi|328450364|gb|AEB11265.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Marinithermus hydrothermalis DSM 14884]
          Length = 187

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 48/73 (65%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          SLF  +   + I+++  VVT+RN +++  +L   F+  A +++ L A F+  I ++VY G
Sbjct: 2  SLFDLVAGLLLILTAVAVVTLRNAVHAALALAGNFLVLAAVYMALDARFLGWIQVIVYAG 61

Query: 65 AVIVFFLFIIMML 77
          A++V FLF+IM+L
Sbjct: 62 AIMVLFLFVIMLL 74


>gi|309322498|ref|YP_003934011.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus grandis]
 gi|308223332|gb|ADO23640.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus grandis]
          Length = 176

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M
Sbjct: 20  ILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVM 79

Query: 76  ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            +       D+++             S  + ++   L       +  +   ++      G
Sbjct: 80  FMNGSEYYKDLNLWTVGDGITSLVCTSILVSLMTTILDTSWYGIIWTTKSNQIIEQDLIG 139

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           N+ + IG  L T +  P E+   ILL+++IGAI
Sbjct: 140 NS-QQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|290489880|gb|ADD31347.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Plumbago
           auriculata]
          Length = 176

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 22/155 (14%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+   NPI+S FSL F  +  +  ++L  ++FVA   L++YVGA+ V  LF +M     I
Sbjct: 26  VIFFTNPIFSAFSLGFVLLCISLFYILENSQFVASAQLLIYVGAINVLILFAVMF----I 81

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEG-----ELSRLVFKG- 128
             +E  K   F   + IG     LI C S F++        S  G      L+ +V +  
Sbjct: 82  NDSEYDKDFHF---WTIGDGITSLI-CTSLFVLLITSILNTSWYGIVWTTRLNHIVEQDL 137

Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            NN + IG  L T +  P E+   ILL+++IGAI 
Sbjct: 138 INNSQQIGIHLSTDFFLPFELISIILLVALIGAIT 172


>gi|301353200|ref|YP_003795198.1| Nad6p [Candida subhashii]
 gi|262410217|gb|ACY66210.1| Nad6p [Candida subhashii]
          Length = 149

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           I+S +++   +PI+S+ S++  F+ AA    L G   + ++ +++YVGA+ + FLFI+ +
Sbjct: 7   IASLMILADLSPIHSILSMLVLFITAALSLYLAGYHLMGILYVLIYVGAIAILFLFIVSL 66

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----NNV 131
           L I   +A   K    +           ++  A+  + F       R+V +        +
Sbjct: 67  LKIK-HLANTVKTSPLV-----------VVALATVLIPFDLTLGERRVVEEAPSLAYQEL 114

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            ++G  LY   A  L ++G IL+LS+IGAI +  R
Sbjct: 115 SHVGTYLYCDSAIMLVVTGVILILSIIGAIAVTRR 149


>gi|38639908|ref|NP_943719.1| NADH dehydrogenase subunit 6 [Penicillium marneffei]
 gi|33860262|gb|AAQ54920.1| NADH dehydrogenase subunit 6 [Penicillium marneffei]
          Length = 194

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 27/183 (14%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           ++I+   L++  +NPI SV  LI  FVN + L +L+G  F+ +  ++VYVGAV + FLFI
Sbjct: 11  LSIVFGVLIIINKNPIISVLYLIGLFVNISVLLILVGFGFIGLSYILVYVGAVSILFLFI 70

Query: 74  IMMLDIDI-EVAEPRKKRGFLG-------SFFIG-ILAAELIVCASN------------- 111
           +M+++I I E+         L         F +G IL    I+  +N             
Sbjct: 71  LMLINIRISELTNETSNYTPLAILTVMLFYFLVGRILPGNFILLNTNLVNSYIIDTYVNE 130

Query: 112 -----FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                 + +++       +    ++  IG V+YT YA  L I+  ILLL+M+G+IV+  +
Sbjct: 131 HIYDELIQYASSKSWDTSLVDMTHITGIGNVMYTNYAILLIIASIILLLAMVGSIVITKK 190

Query: 167 HRR 169
             +
Sbjct: 191 GDK 193


>gi|289474482|gb|ADC97859.1| NADH dehydrogenase subunit 6 [Paragorgia wahine]
          Length = 154

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKADYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181
           ++M+GAI+L  +         H     RQD+  Q+ 
Sbjct: 115 VAMVGAILLAKQPNTPPLYHPHVGTHSRQDLFLQIS 150


>gi|306817877|ref|ZP_07451616.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304649356|gb|EFM46642.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 352

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++F  + S  A++    V   R  +++   ++   ++ AG++  LGAEF+  + +VVY 
Sbjct: 21  QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++  LF+IM++ +   +  PR+         + +  A  I+        +    +  
Sbjct: 81  GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                +N   I   +  QY +P+E+   +L+++ +GA+ L
Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTL 179


>gi|227874593|ref|ZP_03992756.1| NADH dehydrogenase subunit J [Mobiluncus mulieris ATCC 35243]
 gi|227844802|gb|EEJ54948.1| NADH dehydrogenase subunit J [Mobiluncus mulieris ATCC 35243]
          Length = 353

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++F  + S  A++    V   R  +++   ++   ++ AG++  LGAEF+  + +VVY 
Sbjct: 21  QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++  LF+IM++ +   +  PR+         + +  A  I+        +    +  
Sbjct: 81  GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                +N   I   +  QY +P+E+   +L+++ +GA+ L
Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTL 179


>gi|139389318|ref|YP_001123083.1| NADH dehydrogenase ND6 [Aethionema grandiflorum]
 gi|221272306|sp|A4QJQ3|NU6C_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286280|dbj|BAF49908.1| NADH dehydrogenase ND6 [Aethionema grandiflorum]
          Length = 176

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 10/148 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV   NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D 
Sbjct: 26  VVLFTNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAITVLIIFAVMFMN-DS 84

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVC-ASNFMVFSAEG-----ELSRLVFKG--NNVEN 133
           E +     R  +G     ++   ++    S  +  S  G      L++++ +   +N + 
Sbjct: 85  EYST-DLNRWTVGDGITSLICTTILFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQ 143

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAI 161
           IG  L T +  P E+   ILL+++IGAI
Sbjct: 144 IGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|292385485|gb|ADE22037.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
 gi|292385489|gb|ADE22040.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
 gi|292385493|gb|ADE22043.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
 gi|292385497|gb|ADE22046.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
 gi|292385501|gb|ADE22049.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
          Length = 311

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
          V + +NP+Y    L+  F   + +  LLG EF+A++ L+VY GA+ V  LF++MMLD+
Sbjct: 21 VTSTQNPVYRGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDV 78


>gi|297625737|ref|YP_003687500.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921502|emb|CBL56056.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 289

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 77/146 (52%), Gaps = 3/146 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++ F++   +++I+   +V  R P++S   L    V  AGL+  L A F+ +  ++VY 
Sbjct: 8   QAVAFWVLGPLSVIAGVGMVVNRKPVHSALCLAGLMVCLAGLYASLDAPFLFVAQIIVYT 67

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV++ F+F +M++ ID   E+ E  K +       +  L A L++   + +V S  G L
Sbjct: 68  GAVMMLFVFTMMVIGIDTVDEMIETIKGQRVAAIIGVVGLLALLVLAVGHGIVSSPAG-L 126

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147
            +      NV ++  ++++ Y +P E
Sbjct: 127 EQATGADGNVRSLAYLIFSDYVFPFE 152


>gi|118475160|ref|YP_891370.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414386|gb|ABK82806.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 164

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 23/177 (12%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   F  FS  AI+ S  ++  + PI+   SLI   V+ AGL+LLL A+ + +I +VVY
Sbjct: 1   MELFLFINFSLFAILGSLGLILFKAPIHGALSLIVTLVSIAGLYLLLFAKTLFLIQIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--------GILAAELIVCASNFMV 114
            GA++V  +F++M  +I  +    + K     SFF+         IL  E+    S+F +
Sbjct: 61  AGAIMVLSVFVMMFFNIKSDTLFVKLKP---KSFFVIIPPTVIFAILLDEIWKLPSDFGI 117

Query: 115 FSAE-GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              + GE          ++ +G  L+T +    E    +L  ++IG +V +L+ + +
Sbjct: 118 APLDFGE----------IKPLGFYLFTNWGLSFEAISLLLTAALIG-VVAILKGKNN 163


>gi|86553036|gb|ABC98216.1| NADH dehydrogenase subunit 6 [Chlamydomonas incerta]
          Length = 162

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 15/140 (10%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-IEVA 84
           ++P  S+   +  F+N++ + ++LG EF+A++ L+VYVGA+ V FLF+IM+L+I   E+ 
Sbjct: 22  KSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIPATELR 81

Query: 85  EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKVLYT 140
              +    LG F        + V    F +  + G   R +  G     ++ N+G  LY 
Sbjct: 82  AYSRGWSTLGIF--------VFVVNGVFQITPSMGP--RGIITGLPGAESITNLGHALYL 131

Query: 141 QYAYPLEISGFILLLSMIGA 160
            +A  L ++  +L +++ GA
Sbjct: 132 YFADLLILNSLVLTVALFGA 151


>gi|161527790|ref|YP_001581616.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Nitrosopumilus maritimus SCM1]
 gi|160339091|gb|ABX12178.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Nitrosopumilus maritimus SCM1]
          Length = 170

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 17/184 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F   + + I S+   + +R+ +Y   +L+      AG F LL A FVA+  L VY
Sbjct: 1   MADAAFLALTVITIGSAIAALELRSLVYGSIALMGTLGGIAGFFFLLDAPFVALFQLAVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VG++ V  LF +M++  ++   +   K+R F G   IG++   ++   + F+    +  +
Sbjct: 61  VGSIAVLILFTVMLVKRELIFKKIEDKRRKFAG---IGLMLVIMVALGAVFL----DSGI 113

Query: 122 SRLVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             +      V+  +IG    T Y   L + G IL  S+ GA+VL        KR+D+   
Sbjct: 114 KTITTDEPPVDFRDIGTDFVTYYWPALILMGLILAGSVTGALVLA-------KREDVEND 166

Query: 180 LESN 183
             ++
Sbjct: 167 QRTD 170


>gi|225155888|ref|ZP_03724373.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae
           bacterium TAV2]
 gi|224803341|gb|EEG21579.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae
           bacterium TAV2]
          Length = 178

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 19/180 (10%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L   L +   ++++   +++RN I S   L+ A++  A  +L  GAEFVA   ++VYVGA
Sbjct: 2   LTLLLIAAFTLVTAAAALSLRNIIRSAIFLVPAWIGIAAFYLWAGAEFVAFAQVLVYVGA 61

Query: 66  V--IVFFLFIIMMLDIDIEVAEPRKKRGF----------LGSFFIGILAAELIVCASNFM 113
           +  +V F  ++     D    EP  +R                F  IL   L    S  +
Sbjct: 62  ISMVVLFAVVLTRRAPDDPAEEPATRRRLNWAVAAGGAVAAMIFAAILCTALPSPDSAAL 121

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIK 172
              A    S        ++++G  L  ++A  + I+G +L ++++G+I+L    + RD +
Sbjct: 122 ASDAPPPPSL------TIKDLGHALTGEHAAAVLITGALLTVALLGSILLAATDKPRDAR 175


>gi|330997241|ref|ZP_08321094.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Paraprevotella xylaniphila YIT 11841]
 gi|329571036|gb|EGG52743.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Paraprevotella xylaniphila YIT 11841]
          Length = 171

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + S M  + S L VT    + +  +L+F     AGL+ +LG  ++  + L VY G ++
Sbjct: 11  FGVVSLMMAVCSVLAVTSGRILRAATALLFVLFGTAGLYFMLGYTYLGAVQLSVYAGGIV 70

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA----ELIVCASNFMVFSAEG--EL 121
           V ++F I++   D  + E R  RG   +  + +LA       ++ +  F  FS     EL
Sbjct: 71  VLYVFSILLTRSDKNMNE-RIPRGRWFAAMLTVLAGFGLTVFLLSSYGFARFSVPPLVEL 129

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              V  GN +  +GK    Q+  P E+   +LL  MIGAI  M+  +R
Sbjct: 130 DP-VKVGNALVGMGKY---QFVLPFEVVSVLLLACMIGAI--MIARKR 171


>gi|218660274|ref|ZP_03516204.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli IE4771]
          Length = 121

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 21/132 (15%)

Query: 48  LLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-------- 99
           +L A F+A+I + VYVGA++V FLF+IMM+D+         +   L  F  G        
Sbjct: 1   MLEAPFLAVIQIFVYVGAIMVLFLFVIMMIDV---------REAVLQRFLPGGNLLALML 51

Query: 100 --ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSM 157
             +L  E++V       FS    ++  +  G+ +  +   L+  Y  P EI+  ILL ++
Sbjct: 52  VVVLGLEMLVLVLWSDRFSVIEPVA--MRGGDQIRQLSTTLFADYLLPFEIASVILLAAL 109

Query: 158 IGAIVLMLRHRR 169
           +GAIVL  + + 
Sbjct: 110 VGAIVLARKEQE 121


>gi|197131418|gb|ACH47227.1| NADH-plastoquinone oxidoreductase subunit 6 [Sarcocaulon
           vanderietiae]
          Length = 176

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 22/150 (14%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL F F+  +  ++L    FVA   L++YVGA+ V  LF +M ++       
Sbjct: 30  TNPIFSAFSLGFVFICISLFYILANCHFVAASQLLIYVGAINVLILFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCA-------SNFMVFSAEG-----ELSRLVFKG--NNV 131
              K   LG+   G  +   +VC        SN +  S  G       ++++ K   +N 
Sbjct: 85  EYSKDLNLGTVGDGTTS---LVCTTLFLSIISNILDTSWYGIIWTTRANQIIEKDLISNS 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           + IG  L T +  P E+   ILL+++IGAI
Sbjct: 142 QQIGIRLSTDFFLPFELISIILLVALIGAI 171


>gi|325610509|gb|ADZ36457.1| NADH dehydrogenase subunit 6 [Schima khasiana]
          Length = 176

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 22/163 (13%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F+ I++S  V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F
Sbjct: 17  FVLILASLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIF 76

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--K 127
            +M ++          K   L +   GI +   +VC S F+       +     +++  K
Sbjct: 77  AVMFMN-----GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATK 128

Query: 128 GN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            N         N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 129 SNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|306486044|gb|ADM92669.1| NADH-plastoquinone oxidoreductase subunit 6 [Franklinia alatamaha]
          Length = 158

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 22/160 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+SS  V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M
Sbjct: 2   ILSSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVM 61

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN- 129
            ++          K   L +   GI +   +VC S F+       +     +++  K N 
Sbjct: 62  FMN-----GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATKSNQ 113

Query: 130 --------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                   N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 114 ILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 153


>gi|156573609|gb|ABU85140.1| NADH-plastoquinone oxidoreductase subunit 6 [Yucca schidigera]
          Length = 176

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 32/173 (18%)

Query: 13  FMAIISSFL------VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F+  + SFL      VV   NPIYS FSL    V  +  ++   + FVA   L++YVGA+
Sbjct: 11  FVVFLGSFLILGGLGVVLFTNPIYSAFSLGLVLVCISLFYIPSNSYFVAAPQLLIYVGAI 70

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            V  +F IM ++             +L +   GI +   +VC S  ++FS    +  + +
Sbjct: 71  NVLIIFAIMFMN-----GSEYSNDSYLWTVGDGITS---LVCTS--ILFSLITTILDMSW 120

Query: 127 KG----------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            G                +NV+ IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 121 YGIIWTTRKNQIIEQDLISNVQQIGIHLSTDFYLPFELISIILLVSLIGAITM 173


>gi|108802695|ref|YP_636352.1| NADH dehydrogenase subunit 6 [Eucalyptus globulus subsp. globulus]
 gi|122219159|sp|Q49KU5|NU6C_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|60460861|gb|AAX21081.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus globulus
           subsp. globulus]
          Length = 176

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ +  LF +M
Sbjct: 20  ILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILILFAVM 79

Query: 76  ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            +       D+++             S  + ++   L       +  +   ++      G
Sbjct: 80  FMNGSEYYKDLNLWTVGDGITSLVCTSILVSLMTTILDTSWYGIIWTTKSNQIIEQDLIG 139

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           N+ + IG  L T +  P E+   ILL+++IGAI
Sbjct: 140 NS-QQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|126165905|ref|YP_209564.2| NADH dehydrogenase subunit 6 [Huperzia lucidula]
          Length = 196

 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 22/162 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV   N +YS F L +  V  + L++LL A+FVA + +++YVG + V  +F +M
Sbjct: 20  ILGSLGVVLFTNIVYSAFLLGWVPVCISFLYILLNADFVAAVQILIYVGTINVLIVFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------VFSAEGELSRLVFKG- 128
           +++      +P+  R FL  + +G     L +C S F+      + +   ++S +V    
Sbjct: 80  LIN------KPQYFR-FLKYWTVGD-GTALALCTSPFLSIIAAILSTPWSKISLIVLSNK 131

Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                  +NV+ IG    T    P E+   ILL++ +GAI +
Sbjct: 132 IVEEPLTDNVQRIGFHSLTDSPLPFELLSIILLVAPVGAITM 173


>gi|309322278|ref|YP_003934356.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa]
 gi|197131416|gb|ACH47226.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa]
 gi|300069371|gb|ADJ66491.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa]
          Length = 178

 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 20/149 (13%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL   F+  +  F+L    FVA   L++YVGA+ V  LF +M ++        
Sbjct: 31  NPIFSAFSLGLVFICISFFFILANCHFVAAAQLLIYVGAINVLILFAVMFMNSSEYAKSK 90

Query: 87  RKKRGFLGSFFIGILAAELIVCA-------SNFMVFSAEG-----ELSRLVFKG--NNVE 132
                 LG+       A  +VC        SN +  S  G       ++++ K   +N +
Sbjct: 91  DLHLRTLGA------GATSLVCTTLFLSIISNILDTSWYGIIWTTRANQILEKDLISNSQ 144

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 145 QIGIRLSTDFYLPFELISIILLVALIGAI 173


>gi|289474476|gb|ADC97855.1| NADH dehydrogenase subunit 6 [Paragorgia arborea]
          Length = 154

 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181
           ++M+GAI+L  +         H     RQD+  Q+ 
Sbjct: 115 VAMVGAILLAKQPNTPSLYNPHVGTHSRQDLFLQIS 150


>gi|75286704|sp|Q5SCZ0|NU6C_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|50660038|gb|AAT80760.1| NADH-plastoquinone oxidoreductase subunit 6 [Huperzia lucidula]
          Length = 199

 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 22/162 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV   N +YS F L +  V  + L++LL A+FVA + +++YVG + V  +F +M
Sbjct: 23  ILGSLGVVLFTNIVYSAFLLGWVPVCISFLYILLNADFVAAVQILIYVGTINVLIVFAVM 82

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------VFSAEGELSRLVFKG- 128
           +++      +P+  R FL  + +G     L +C S F+      + +   ++S +V    
Sbjct: 83  LIN------KPQYFR-FLKYWTVGD-GTALALCTSPFLSIIAAILSTPWSKISLIVLSNK 134

Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                  +NV+ IG    T    P E+   ILL++ +GAI +
Sbjct: 135 IVEEPLTDNVQRIGFHSLTDSPLPFELLSIILLVAPVGAITM 176


>gi|289474455|gb|ADC97841.1| NADH dehydrogenase subunit 6 [Paragorgia aotearoa]
          Length = 154

 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181
           ++M+GAI+L  +         H     RQD+  Q+ 
Sbjct: 115 VAMVGAILLAKQPNTPPLYHPHVGTHSRQDLFLQIS 150


>gi|289474461|gb|ADC97845.1| NADH dehydrogenase subunit 6 [Paragorgia regalis]
 gi|289474485|gb|ADC97861.1| NADH dehydrogenase subunit 6 [Paragorgia yutlinux]
          Length = 154

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181
           ++M+GAI+L  +         H     RQD+  Q+ 
Sbjct: 115 VAMVGAILLAKQPNTPPLYNPHVGTHSRQDLFLQIS 150


>gi|162009884|gb|ABX82066.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162009893|gb|ABX82074.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162009902|gb|ABX82082.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162009911|gb|ABX82090.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162009920|gb|ABX82098.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162145625|gb|ABX82846.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162145635|gb|ABX82855.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
          Length = 162

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 19/143 (13%)

Query: 25  VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84
            ++P  S+   +  F+N++ + ++LG EF+A++ L+VYVGA+ V FLF+IM+L+I     
Sbjct: 21  TKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIP--AT 78

Query: 85  EPRK-KRGF--LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKV 137
           E R   RG+  LG F        + +    F +  + G   R +  G     ++ N+G  
Sbjct: 79  ELRAYSRGWSTLGIF--------VFIINGVFQITPSMGP--RGIITGLPGAESITNLGHA 128

Query: 138 LYTQYAYPLEISGFILLLSMIGA 160
           LY  +A  L ++  +L +++ GA
Sbjct: 129 LYLYFADLLILNSLVLTVALFGA 151


>gi|11467872|ref|NP_050923.1| NADH dehydrogenase subunit 6 [Nephroselmis olivacea]
 gi|14194995|sp|Q9TKV3|NU6C_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|5880801|gb|AAD54894.1|AF137379_117 subunit 6 of NADH-plastoquinoneoxidoreductase [Nephroselmis
           olivacea]
          Length = 169

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR- 87
           +Y+ F L   F   AG+++LL A+FVA   ++VYVGA+ V  LF IM+  ++ + A PR 
Sbjct: 30  VYAAFLLGAVFFCLAGIYVLLHADFVAAAQVLVYVGAINVLILFAIML--VNPQDAPPRA 87

Query: 88  --KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145
                   G   IG+L   +       M+ +          + N++  +G  L++     
Sbjct: 88  LDSPPLIPGIACIGLLGVLV------QMISTTSWLTPPWTPEPNSLPVLGGHLFSDCLLA 141

Query: 146 LEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            E+   +LL++++GAIV  L  R  ++R  
Sbjct: 142 FEVMSLVLLVALVGAIV--LARREPVERSS 169


>gi|323148957|ref|YP_004222511.1| NADH-plastoquinone oxidoreductase subunit 6 [Smilax china]
 gi|308742648|gb|ADO33499.1| NADH-plastoquinone oxidoreductase subunit 6 [Smilax china]
          Length = 176

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
                  L +   G+ +   +VC S  ++FS    +    + G                +
Sbjct: 85  EYSNDSRLWTIGDGVTS---LVCTS--ILFSLITTIPDTSWYGILWTTKSNQILEQDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           NV+ IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 140 NVQQIGIHLSTDFYLPFELISIILLVSLIGAITM 173


>gi|332885912|gb|EGK06156.1| hypothetical protein HMPREF9456_00030 [Dysgonomonas mossii DSM
           22836]
          Length = 167

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 17/174 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + FY+ + + + S+ + VT +  I S   L+F  +  AGL+LLL   F+  + + VY 
Sbjct: 3   EQIIFYILATIIVFSTIMAVTTQKIIRSATFLLFVLLGTAGLYLLLDYHFLMAVQIAVYG 62

Query: 64  GAVIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           G V+V F+F I++     +D++  +P       G  FI  LAA   +     ++F    +
Sbjct: 63  GGVMVLFIFAILLTHEPGVDVKFEKP-------GRIFISALAALAGLAICGHIIFYNVNK 115

Query: 121 LSRLVFKGN-NVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRR 169
               + +   N+++IG  +      QY  P E    +LL  +IG I  M+  +R
Sbjct: 116 FYTYITQQELNMQDIGMGMMGTDKYQYLLPFEAISILLLACIIGGI--MIARKR 167


>gi|156959936|gb|ABU98425.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 7/137 (5%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ +    +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + +  S++   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L  +  
Sbjct: 54  FYSLLTNSSKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 169 RDIKRQDISKQLESNPD 185
                    + L S  D
Sbjct: 114 SPFLYNSHGESLRSKQD 130


>gi|313156921|gb|EFR56359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alistipes sp.
           HGB5]
          Length = 169

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 9/172 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++ + F + +    +S+ L VT +  + +   L+F     AG++  L   F+  + L+
Sbjct: 3   ITLELIVFTVLAVFTAVSALLAVTTKRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y G + V ++F I++     + +E  K  G+   FF+G+ A  L +    ++    +  
Sbjct: 63  IYAGGITVLYVFSILLTSSQGDKSEDLK--GY--KFFVGLAATLLSLGVCLYVTLGHDFR 118

Query: 121 LSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168
            S  V    +V+ IG  L +  +Y Y  P E+   +LL  ++G I L+ R R
Sbjct: 119 PSHFVHGELHVQTIGHALMSSGKYGYVLPFEVISILLLACIVGGI-LIARKR 169


>gi|162148246|ref|YP_001602707.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786823|emb|CAP56406.1| putative NADH-quinone oxidoreductase chain J [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 168

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 81/154 (52%), Gaps = 5/154 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L + + ++++F+ VT  N ++++  L+   +  AG+F  LGA F AM+ +++Y GA++
Sbjct: 8   FALSALVVVLAAFMTVTRANAVHALLYLVVLLLALAGIFFQLGAPFAAMLEVIIYAGAIM 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           V F+F++MML++     + R++R ++    +IG     L       ++ +          
Sbjct: 68  VLFVFVVMMLNLG--ATDQRRERAWIVPRVWIG--PVLLAGVLLAALLRALAVTAPAGGG 123

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
                  +G VLY  YA  +E++ F+LL  +  A
Sbjct: 124 GPIGPAQVGLVLYGPYALTVELASFLLLAGLASA 157


>gi|18860372|ref|NP_569688.1| NADH dehydrogenase subunit 6 [Psilotum nudum]
 gi|75248907|sp|Q8WHX6|NU6C_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|18389525|dbj|BAB84277.1| NADH dehydrogenase ND6 subunit [Psilotum nudum]
          Length = 188

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 26/170 (15%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+ + + + S FSL   F++ + L+L+L A+FVA   +++YVGA+ V  +F +M+     
Sbjct: 26  VILLNDIVQSAFSLGLTFISISLLYLVLNADFVAAAQVLIYVGAINVLIVFSVML----- 80

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFM-------------VFSAEGELSRLVFK- 127
            + +P K      S   G     LIVC S F+             ++S +   S  +F+ 
Sbjct: 81  -IQKPHKNEDLSTSRNTGN-NITLIVCTSLFLFLVSIILDTSWSQIYSIKK--STKIFEP 136

Query: 128 --GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              +NV+ IG  L T++  P E+   +LL++++GAI  M R  R  +  D
Sbjct: 137 ILKSNVQLIGSQLLTEFLLPFELLSVLLLVALVGAIT-MSRQSRMFEMPD 185


>gi|224538207|ref|ZP_03678746.1| hypothetical protein BACCELL_03098 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520175|gb|EEF89280.1| hypothetical protein BACCELL_03098 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 170

 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 13/170 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +    + S L VT R+ + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   ITLETVVFYFLAVFISVCSILTVTTRHMVRSATYLLFTLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSA 117
           VY G ++V ++F I++   + +     K+      LG+   G +    I     F+V   
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDRTTKLKRSKLLAGLGATVGGAIIVVFITLKHKFLV--- 119

Query: 118 EGELSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVL 163
               + LV    N++ IG  + +     Y  P E    +LL  ++G +V+
Sbjct: 120 ---TTDLVPLEINIKTIGHSMLSSDKFGYLLPFEAVSILLLACIVGGLVI 166


>gi|160886843|ref|ZP_02067846.1| hypothetical protein BACOVA_04857 [Bacteroides ovatus ATCC 8483]
 gi|299148401|ref|ZP_07041463.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 3_1_23]
 gi|156107254|gb|EDO08999.1| hypothetical protein BACOVA_04857 [Bacteroides ovatus ATCC 8483]
 gi|298513162|gb|EFI37049.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 3_1_23]
          Length = 170

 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 13/160 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS---NFMVFSAE 118
           Y G ++V ++F I++   + + AE  K+   L      I    +I+  +   NFM     
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKAKRSKLLAGLITMIAGLAIILTITLKHNFM----- 118

Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILL 154
            + + L     N+  IG  L +  +Y Y  P E    +LL
Sbjct: 119 -QTANLAPHEINIHAIGNALLSSDKYGYILPFEAVSILLL 157


>gi|77019999|ref|YP_337883.1| NADH dehydrogenase subunit 6 [Aspergillus niger]
 gi|75993219|gb|ABA33724.1| NADH dehydrogenase subunit 6 [Aspergillus niger]
          Length = 217

 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 37/180 (20%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT-LVVYVGAVIVFFLFIIMMLDIDIE-- 82
           RNP+ S   LI  FV+ AG+ +L+G + + + + ++VYVGA    FL I+M++++ I   
Sbjct: 38  RNPLVSAVFLIGVFVDIAGVLILVGDDDIGVSSYILVYVGAAATLFLLILMLINMRISEL 97

Query: 83  VAEPRKKRGF-----------LGSFFIGILAAELIVCASN---------------FMVFS 116
           V+E  +   +           +G           IV +S+                 +  
Sbjct: 98  VSETNRDTPWAVITVSLFYFIMGQVTPSNFTDNTIVTSSSTSFSEVYDLQVDDEILNIVD 157

Query: 117 AEGELSRLVFKGNNV--------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            + E +    K  +           IG  +YT Y+  L IS  ILL+ M+GAIV+ ++ +
Sbjct: 158 LQQETASASSKSGDTSLVELPHLSGIGNSMYTNYSLWLIISSVILLVGMVGAIVITIKQK 217


>gi|170784789|ref|YP_001718705.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum]
 gi|170784796|ref|YP_001718712.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum]
 gi|221272393|sp|A9QC80|NU6C_TRACE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|156598841|gb|ABU85673.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum]
 gi|157267537|gb|ABV26530.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum]
 gi|157267544|gb|ABV26537.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum]
          Length = 176

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80
           VV + NPIYS FSL    V  + L++L  + F+A   L++YVGA+ V  +F +M L+   
Sbjct: 26  VVLLPNPIYSAFSLGLVLVCISLLYILSNSHFLAAAQLLIYVGAINVLIIFAVMFLNGSE 85

Query: 81  -IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGELSRLVFKG--NNVENIG 135
             +   P      + S     L A LI    +   +      + ++++ +   NN + IG
Sbjct: 86  YYKDLNPWTVGDGVTSVVCTSLFASLITTIPDTSWYGIIWTTKSNQIIEQDLINNSQEIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAI 161
             L T +  P E+   ILL+++IGAI
Sbjct: 146 IHLSTDFLIPFELISIILLVALIGAI 171


>gi|333031509|ref|ZP_08459570.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           coprosuis DSM 18011]
 gi|332742106|gb|EGJ72588.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           coprosuis DSM 18011]
          Length = 171

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 33/182 (18%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F + + + ++ S L VT    + S   L+F  +  AG++  L   F+  + L+VY 
Sbjct: 6   EAVVFAVLALIIVVFSVLTVTTSRILRSATYLLFVLLGTAGIYFQLNYSFLGAVQLMVYA 65

Query: 64  GAVIVFFLFIIMMLDI----DIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSA 117
           G + V ++F I++       D     P+ K      F++G + A    +VCA  F++   
Sbjct: 66  GGITVLYVFAILLTSSKGMNDRAEKLPKSK------FWVGAITAVVSFLVCA--FLIL-- 115

Query: 118 EGELSRLVFKG---NNVE----NIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLR 166
                + VFK    N+VE     IGK +      QY  P E+ G +LL  +IGAIV+  R
Sbjct: 116 -----KNVFKEAMFNDVEVGMNQIGKTMLGTEKFQYLIPFELMGVLLLACVIGAIVIA-R 169

Query: 167 HR 168
            R
Sbjct: 170 KR 171


>gi|182412572|ref|YP_001817638.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus
           terrae PB90-1]
 gi|177839786|gb|ACB74038.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus
           terrae PB90-1]
          Length = 211

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 1/150 (0%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + + V+ +  I +V  L+   V  AGL+  L + F+A++ +++YVGAV V  +F +M+ +
Sbjct: 26  ALIAVSSQRIIRAVTGLMICCVGLAGLYYFLNSPFLALMEILIYVGAVCVTIVFGVMLAE 85

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
            D  V   +  R F  +    +++A +    +   + +             +V  IG  L
Sbjct: 86  PDWPV-NLKHPRAFHKTLLAALVSAAIGGGLAGLALHAPWPAQPVQTVNDGSVAAIGTSL 144

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            T Y++  E+   +LL++++GA+V+    R
Sbjct: 145 LTTYSFVFELISLVLLVAILGALVIARAGR 174


>gi|209542886|ref|YP_002275115.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530563|gb|ACI50500.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 165

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 81/154 (52%), Gaps = 5/154 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L + + ++++F+ VT  N ++++  L+   +  AG+F  LGA F AM+ +++Y GA++
Sbjct: 5   FALSALVVVLAAFMTVTRANAVHALLYLVVLLLALAGIFFQLGAPFAAMLEVIIYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           V F+F++MML++     + R++R ++    +IG     L       ++ +          
Sbjct: 65  VLFVFVVMMLNLG--ATDQRRERAWIVPRVWIG--PVLLAGVLLAALLRALAVTAPAGGG 120

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
                  +G VLY  YA  +E++ F+LL  +  A
Sbjct: 121 GPIGPAQVGLVLYGPYALTVELASFLLLAGLASA 154


>gi|124004524|ref|ZP_01689369.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Microscilla marina ATCC 23134]
 gi|123990096|gb|EAY29610.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Microscilla marina ATCC 23134]
          Length = 193

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 24/184 (13%)

Query: 11  FSFMAII--SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           F F+A+I  S+ +++  R  +Y+ FSL+   +  + L++  GA+F+A+  +++YVG ++V
Sbjct: 8   FGFVALIGVSTLVLLGTRKVLYAAFSLLLILLGISALYVFAGADFLAVTQIIIYVGGILV 67

Query: 69  FFLFIIMML-----DIDIEVAEP------------RKKRGFLGSFFIGILAAELIVCA-- 109
             LF IM+      ++ I  + P             K R  L    +G+    ++V A  
Sbjct: 68  LLLFGIMLTNRPPQNLSIRFSNPFQQDETSDVQPLTKTRNNLAGIVLGLGLLAILVFAIH 127

Query: 110 -SNF--MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +N   M +  +   ++ V K + V+ +G  L TQY    E+   +L+++++GA+++  R
Sbjct: 128 KANLGQMPWIKQAVQNQQVIKQSTVQGLGIQLMTQYVLVFEVIAVLLMVALLGAVLIAGR 187

Query: 167 HRRD 170
             + 
Sbjct: 188 TEKK 191


>gi|301353376|ref|YP_003795634.1| NADH-plastoquinone oxidoreductase subunit 6 [Pteridium aquilinum
           subsp. aquilinum]
 gi|301016294|gb|ADK47581.1| NADH-plastoquinone oxidoreductase subunit 6 [Pteridium aquilinum
           subsp. aquilinum]
          Length = 195

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 17/175 (9%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
            V+  N  +S FSL   F   +  + +L A+ VA    +VYVGA+ V  +  +M+ D   
Sbjct: 26  AVSFANLTHSAFSLGLVFTRISLSYFVLNADSVAAAQSLVYVGAINVSIVSAVMVTDQPT 85

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---------FSAEGELSRLVFKGNNVE 132
                 +  G+    FI + A  ++      M+         F  + E+      G+NV+
Sbjct: 86  RSNSTSRNIGY----FIALGACAILFSVLTNMIHNTKWFDVSFITQSEILAANTSGSNVQ 141

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187
            +G  L T++  P E++  +LL++++GAI       RD       ++   + DNS
Sbjct: 142 QLGYKLLTEFLVPFELASILLLVALVGAI----NPARDEDTNATDEKASLSRDNS 192


>gi|156959919|gb|ABU98412.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959924|gb|ABU98416.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959932|gb|ABU98422.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959940|gb|ABU98428.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959944|gb|ABU98431.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959952|gb|ABU98437.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959956|gb|ABU98440.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959964|gb|ABU98446.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959968|gb|ABU98449.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959980|gb|ABU98458.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959988|gb|ABU98464.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959992|gb|ABU98467.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960000|gb|ABU98473.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960004|gb|ABU98476.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960016|gb|ABU98485.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960024|gb|ABU98491.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960028|gb|ABU98494.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960032|gb|ABU98497.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960036|gb|ABU98500.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ +    +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L  +  
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 169 RDIKRQDISKQLESNPD 185
                    + L S  D
Sbjct: 114 SPFLYNSHGESLRSKQD 130


>gi|156122204|gb|ABU50164.1| NADH dehydrogenase subunit 6 [Cordyceps bassiana]
          Length = 212

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 30/193 (15%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  + S +A++    V+  +NPI S+  LI  F + +   +L G  F+    L+VY+GAV
Sbjct: 17  FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFMVFSA 117
            + FLFI+M+++I     +         + FIGIL            L +  +N+++ S 
Sbjct: 77  SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136

Query: 118 EG----------ELSRLVFKGNN-----------VENIGKVLYTQYAYPLEISGFILLLS 156
                       + S ++F  +N           +  IG +LYT Y   L +S  ILLL+
Sbjct: 137 NYNNILPTVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196

Query: 157 MIGAIVLMLRHRR 169
           M GAI++ ++   
Sbjct: 197 MTGAIIITIKQES 209


>gi|15088716|ref|NP_150125.1| NADH dehydrogenase subunit 6 [Schizophyllum commune]
 gi|15077923|gb|AAK83409.1|AF402141_13 NADH dehydrogenase subunit 6 [Schizophyllum commune]
          Length = 215

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          SS L +T +NP+ SV  LI  FV AAG  + +G  F+ +  +++YVGA+ V FLF+IMM+
Sbjct: 16 SSILTITFKNPVISVIFLILTFVQAAGYLIFIGINFIGISYIIIYVGAIAVLFLFVIMMI 75

Query: 78 DIDI-EVAEPRKK 89
          ++++ E+ E   +
Sbjct: 76 NLNLSEILETGNE 88


>gi|115531974|ref|YP_784130.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium x
           hortorum]
 gi|122164265|sp|Q06FQ1|NU6C_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|112382128|gb|ABI17321.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium x
           hortorum]
          Length = 176

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 8/147 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML---- 77
           VV + NPIYS FSL F F+  +  ++L  + FVA   L++YVGA+ V  LF +M +    
Sbjct: 26  VVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSE 85

Query: 78  ---DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
              D  +               F+ ++   L       +  +   ++    F  N+ + +
Sbjct: 86  YYKDFHLWTLGDGLTSLICTILFLSLITTILDTSWYGILWTTKSNQIIEKDFISNS-QQL 144

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAI 161
           G +L T +  P E+   ILL++++GAI
Sbjct: 145 GILLSTDFFLPFELMSIILLVALLGAI 171


>gi|197131420|gb|ACH47228.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium
           cotyledonis]
          Length = 176

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + NPIYS FSL F F+  +  ++L  + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVM 79

Query: 76  MLDIDIEVAE-PRKKRG-FLGSFFIGILAAELIVCASNFMVFS--AEGELSRLVFKG--N 129
            ++      E P    G  L S    IL   LI    N   +        ++++ K   +
Sbjct: 80  FMNGSEYYKESPLWTVGDGLTSLISTILFFSLITTILNTSWYGIIWTTRSNQIIEKDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           N + +G  L T +  P E+   ILL++++GAI
Sbjct: 140 NSQQLGIHLSTDFFLPFELISIILLVALLGAI 171


>gi|323168551|gb|EFZ54231.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family
          protein [Shigella sonnei 53G]
 gi|332766099|gb|EGJ96309.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Shigella
          flexneri 2930-71]
          Length = 166

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI-DI 81
          +T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++V F+F++MML++   
Sbjct: 2  ITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGS 61

Query: 82 EVAEPRK 88
          E+ + R+
Sbjct: 62 EIEQERQ 68


>gi|296936724|gb|ADH94396.1| NADH-plastoquinone oxidoreductase subunit 6 [Syzygium cumini]
          Length = 176

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ +  LF +M
Sbjct: 20  ILGSLGVVLLINPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILILFAVM 79

Query: 76  ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            +       D+++             S  + ++   L       +  +   ++      G
Sbjct: 80  FMNGSEYYKDLNLWTVGDGITSLVCTSILVSLMTTILDTSWYGIIWTTKSNQIIEQDLIG 139

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           N+ + IG  L T +  P E+   ILL+++IGAI
Sbjct: 140 NS-QQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|156960008|gb|ABU98479.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ +    +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L  +  
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 169 RDIKRQDISKQLESNPD 185
                    + L S  D
Sbjct: 114 SPFLYNSHGESLRSKQD 130


>gi|289474473|gb|ADC97853.1| NADH dehydrogenase subunit 6 [Paragorgia arborea]
          Length = 154

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 7/129 (5%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +LL
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVLL 114

Query: 155 LSMIGAIVL 163
           ++M+GAI+L
Sbjct: 115 VAMVGAILL 123


>gi|156959928|gb|ABU98419.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ +    +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L  +  
Sbjct: 54  FYSLLTNSXKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 169 RDIKRQDISKQLESNPD 185
                    + L S  D
Sbjct: 114 SPFLYNSHGESLRSKQD 130


>gi|325610517|gb|ADZ36464.1| NADH dehydrogenase subunit 6 [Gordonia lasianthus]
          Length = 176

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 22/163 (13%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F+ I++S  V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F
Sbjct: 17  FVLILASLGVILFPNPIYSAFSLGLVFVCISFFYILSNSYFVAAAQLLIYVGAINVLIIF 76

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--K 127
            +M ++          K   L +   GI +   +VC S F+       +     +++  K
Sbjct: 77  AVMFMN-----GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATK 128

Query: 128 GN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            N         N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 129 SNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|290489850|gb|ADD31332.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ilex cornuta]
          Length = 177

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVF--KGN---------NVE 132
             K   L +   G+ +   IVC S F   M    +     +++  K N         N +
Sbjct: 86  YYKDFHLWTVGDGVTS---IVCTSLFVSLMTTIPDTSWHGIIWTTKSNQIIEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|197935768|ref|YP_002213611.1| NADH dehydrogenase subunit 6 [Cordyceps brongniartii]
 gi|156122225|gb|ABU50184.1| NADH dehydrogenase subunit 6 [Cordyceps brongniartii]
          Length = 212

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 30/193 (15%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  + S +A++    V+  +NPI S+  LI  F + +   +L G  F+    L+VY+GAV
Sbjct: 17  FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFMVFSA 117
            + FLFI+M+++I     +         + FIGIL            L +  +N+++ S 
Sbjct: 77  SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136

Query: 118 EG----------ELSRLVFKGNN-----------VENIGKVLYTQYAYPLEISGFILLLS 156
                       + S ++F  +N           +  IG +LYT Y   L +S  ILLL+
Sbjct: 137 NYNNILPIVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196

Query: 157 MIGAIVLMLRHRR 169
           M GAI++ ++   
Sbjct: 197 MTGAIIITIKQDS 209


>gi|187373198|ref|YP_001876510.1| NADH dehydrogenase subunit 6 [Beauveria bassiana]
 gi|164598942|gb|ABY61760.1| NADH dehydrogenase subunit 6 [Beauveria bassiana]
          Length = 212

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 30/193 (15%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  + S +A++    V+  +NPI S+  LI  F + +   +L G  F+    L+VY+GAV
Sbjct: 17  FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFMVFSA 117
            + FLFI+M+++I     +         + FIGIL            L +  +N+++ S 
Sbjct: 77  SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136

Query: 118 EG----------ELSRLVFKGNN-----------VENIGKVLYTQYAYPLEISGFILLLS 156
                       + S ++F  +N           +  IG +LYT Y   L +S  ILLL+
Sbjct: 137 NYNNILPTVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196

Query: 157 MIGAIVLMLRHRR 169
           M GAI++ ++   
Sbjct: 197 MTGAIIITIKQDS 209


>gi|156959960|gb|ABU98443.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ +    +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L  +  
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGXHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 169 RDIKRQDISKQLESNPD 185
                    + L S  D
Sbjct: 114 SPFLYNSHGESLRSKQD 130


>gi|323698258|ref|ZP_08110170.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           sp. ND132]
 gi|323458190|gb|EGB14055.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           desulfuricans ND132]
          Length = 174

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 3/174 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V+  + F +++ + +  + L V+  + + ++  LI   +  AG++LLL   F+A + L++
Sbjct: 3   VLAKIAFGVYTLVILGGAVLAVSSSSLVRALIGLITTLIGVAGMYLLLATPFMAFMQLLI 62

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V   F +M+   +    E  K    +  +  G+ A         ++V +     
Sbjct: 63  YVGAVSVLIFFAVMLTRAEQGGDEADKAP--MKRYVFGLAATMAPAAILGWLVLTRPAP- 119

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           S  V     ++ +G+ L   Y  P E+   IL+++M GA++L+   R      D
Sbjct: 120 SVAVPVEVPIKQLGEGLLGSYFLPFELISVILMVAMSGAVLLVWEKRGQRNGGD 173


>gi|200004082|ref|YP_002221532.1| NADH dehydrogenase subunit 6 [Hydra magnipapillata]
 gi|194578744|tpe|CAP49321.1| TPA: NADH dehydrogenase subunit 6 [Hydra vulgaris]
          Length = 185

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 2/177 (1%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S + I+   + +   NPI+SVF L+  F  +  L + L  EF++++ +++YVGA+++ FL
Sbjct: 9   SILIILGCLMCINSLNPIHSVFWLVTVFFFSFALLINLNLEFLSLLLIIIYVGAIVILFL 68

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-LSRLVFKGNN 130
           F+IMMLDI                  I  L    I+    F+ +    + L+  +    N
Sbjct: 69  FVIMMLDIIQIKKNSNINNIIPIILIILSLLTIKIINKDIFLSYHLNNDFLNFNLINHYN 128

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI-SKQLESNPDN 186
             N+    Y++Y+    +   IL + MIG IVL + +  + K+Q I  + L +N  N
Sbjct: 129 FHNLALFFYSKYSINFILISIILSIGMIGVIVLTITYNSNSKKQKIFIQHLRNNSWN 185


>gi|116617161|ref|YP_817535.1| NADH-plastoquinone oxidoreductase subunit 6 [Coffea arabica]
 gi|122153672|sp|A0A388|NU6C_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|116242217|gb|ABJ89732.1| NADH-plastoquinone oxidoreductase subunit 6 [Coffea arabica]
          Length = 176

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL F  V  +  ++LL + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGFVLVCISLFYILLNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132
             K   L +   G+ +   +VC   F+ + +   ++S        K N         N +
Sbjct: 86  YYKDFHLWTIGDGVTS---VVCTGLFISLITTIPDMSWYGIIWTTKSNQILEQDLITNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 143 QIGVHLSTDFFLPFELVSIILLVALIGAI 171


>gi|114107099|ref|YP_740255.1| NADH-plastoquinone oxidoreductase subunit 6 [Liriodendron
           tulipifera]
 gi|122221283|sp|Q0G9G6|NU6C_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|113201047|gb|ABI32562.1| NADH-plastoquinone oxidoreductase subunit 6 [Liriodendron
           tulipifera]
          Length = 176

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 26/152 (17%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +   +   + FVA   L++YVGAV V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
              K  +L +   G+ +   +VC S  ++FS    +S   + G                +
Sbjct: 85  EYSKDLYLWTVGDGVTS---LVCTS--ILFSLITTISDTSWYGIIWTTRSNQIIEQDLTS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           NV+ IG  L T +  P E+   ILL+++IGAI
Sbjct: 140 NVQQIGIHLSTDFYLPFELISIILLVALIGAI 171


>gi|156959948|gb|ABU98434.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 7/115 (6%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ +    +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILL 108


>gi|75755712|ref|YP_319816.1| NADH dehydrogenase subunit 6 [Acorus calamus]
 gi|161622362|ref|YP_001586234.1| NADH dehydrogenase subunit 6 [Acorus americanus]
 gi|122217394|sp|Q3V4Y1|NU6C_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272304|sp|A9LYF3|NU6C_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|74381762|emb|CAI53847.1| NADH dehydrogenase ND6 subunit [Acorus calamus]
 gi|156573645|gb|ABU85156.1| NADH-plastoquinone oxidoreductase subunit 6 [Acorus americanus]
 gi|160369905|gb|ABX38796.1| NADH-plastoquinone oxidoreductase subunit 6 [Acorus americanus]
          Length = 177

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 26/158 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGAV V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAVNVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
                 +L +   G+ +   +VC S  ++FS    +    + G                +
Sbjct: 85  DYSNDFYLWTVGDGVTS---LVCTS--ILFSLITTILDTSWYGIIWNTGSNQIVEQDLTS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           NV+ IG  L T +  P E+   ILL+++IGAI +  ++
Sbjct: 140 NVQQIGIHLSTDFYLPFELVSIILLVALIGAITMARQY 177


>gi|305666191|ref|YP_003862478.1| NADH dehydrogenase I subunit J [Maribacter sp. HTCC2170]
 gi|88707689|gb|EAQ99930.1| NADH dehydrogenase I, chain J [Maribacter sp. HTCC2170]
          Length = 174

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + FY+ + + I+ +   VT R  + SV  L+F     AG++ L+   F+A I L VY
Sbjct: 1  MERIIFYVLAIIMIVFAIASVTSRKMLRSVIYLLFVLCGIAGIYFLIDYNFLAAIQLTVY 60

Query: 63 VGAVIVFFLFIIMM---LDIDIEVAEPRKK 89
           G +IV  +F +++   +++++E+A+  K+
Sbjct: 61 AGGIIVLIIFSVLLVHHIEMELEIAKTSKQ 90


>gi|156598281|gb|ABU85402.1| NADH-plastoquinone oxidoreductase subunit 6 [Ginkgo biloba]
          Length = 176

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 12/149 (8%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N IYS  SL    V  + L++LL A+FVA   +++YVGA+ V  +F +M+++       P
Sbjct: 31  NIIYSALSLGSVLVCISLLYILLNADFVAAAQILIYVGAINVLIVFAVMLMN---NQKYP 87

Query: 87  RKKRGF-LGSFFIGILAAEL------IVCASNFMVFSAEGELSRLVFKG--NNVENIGKV 137
                + +G     ++   L      I+  +++ V S   EL++ + +   NN++ IG  
Sbjct: 88  NSAPPWTVGDGITSVVCMSLFCSLITIILNTSWSVISLTTELNQFLEQDLTNNIQRIGVH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL++++GAI +  R
Sbjct: 148 LSTDFILPFELISIILLITLVGAITMARR 176


>gi|81176304|ref|YP_398381.1| NADH dehydrogenase subunit 6 [Lactuca sativa]
 gi|122212008|sp|Q332S4|NU6C_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|78675222|dbj|BAE47648.1| NAD(P)H-quinone oxidoreductase chain 6 [Lactuca sativa]
 gi|88657035|gb|ABD47285.1| NADH-plastoquinone oxidoreductase subunit 6 [Lactuca sativa]
          Length = 176

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVFVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFIN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132
             K   L +   GI +   +VC S F+ + +   + S        K N         N +
Sbjct: 86  YSKDFHLWTVGDGITS---VVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E    ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFLPFEFISIILLVALIGAI 171


>gi|156598391|gb|ABU85455.1| NADH-plastoquinone oxidoreductase subunit 6 [Musa acuminata]
          Length = 176

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 26/158 (16%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + NPIYS FSL    V  +  ++   + FVA   L++YVGAV V  +F +M ++   
Sbjct: 26  VVLLTNPIYSAFSLGLVLVCISLFYIPSNSFFVAAAQLLIYVGAVNVLIIFAVMFMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------------- 128
                     +  +   G+ +   +VC S  ++FS    +    + G             
Sbjct: 83  --GSEYSNDSYFWTIGDGVTS---LVCTS--ILFSLITTIPDTSWYGIIWTTRSNQIIEQ 135

Query: 129 ---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
              +NV+ IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 136 DLISNVQQIGIHLSTDFYLPFELISIILLVSLIGAITM 173


>gi|11467094|ref|NP_042569.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|128811|sp|P10329|NU6M_CHLRE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|12507|emb|CAA38644.1| mitochondrial NADH dehydrogenase subunit 6 [Chlamydomonas
           reinhardtii]
 gi|563697|gb|AAB93445.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
          Length = 162

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 76/142 (53%), Gaps = 19/142 (13%)

Query: 25  VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84
            ++P  S+   +  F+N++ + ++LG EF+A++ L+VYVGA+ V FLF+IM+L+I     
Sbjct: 21  TKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIP--AT 78

Query: 85  EPRK-KRGF--LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKV 137
           E R   RG+  LG F        + +    F +  + G   R +  G     ++ N+G  
Sbjct: 79  ELRAYSRGWSTLGIF--------VFIINGVFQITPSMGP--RGIITGLPGAESITNLGHA 128

Query: 138 LYTQYAYPLEISGFILLLSMIG 159
           LY  +A  L ++  +L +++ G
Sbjct: 129 LYLYFADLLILNSLVLTVALFG 150


>gi|325610641|gb|ADZ36569.1| NADH dehydrogenase subunit 6 [Stewartia crassifolia]
          Length = 176

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M ++   
Sbjct: 26  VILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN------- 129
                  K   L +   GI +   +VC S F+       +     +++  K N       
Sbjct: 83  --GSEYSKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATKSNQILEQDL 137

Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
             N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 138 ISNSQKIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|15147304|ref|NP_150308.1| NADH dehydrogenase subunit 6 [Spizellomyces punctatus]
 gi|15100073|gb|AAK84237.1|AF404303_11 NADH dehydrogenase subunit 6 [Spizellomyces punctatus]
          Length = 260

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 48/74 (64%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          +YL     ++S+ +V +  NPI+ +  LI  F++ + L ++L   F+ +  ++VYVGA++
Sbjct: 8  YYLIGITGLLSALVVASSLNPIHRIAFLILVFLSGSFLMIILDFYFLGLTYIIVYVGAIM 67

Query: 68 VFFLFIIMMLDIDI 81
          + FLF+IMM+ I +
Sbjct: 68 ILFLFVIMMVQIHL 81


>gi|13518395|ref|NP_084754.1| NADH dehydrogenase subunit 6 [Oenothera elata subsp. hookeri]
 gi|169142762|ref|YP_001687189.1| NADH dehydrogenase subunit 6 [Oenothera argillicola]
 gi|169142912|ref|YP_001687335.1| NADH dehydrogenase subunit 6 [Oenothera glazioviana]
 gi|169142997|ref|YP_001687419.1| NADH dehydrogenase subunit 6 [Oenothera biennis]
 gi|169143083|ref|YP_001687503.1| NADH dehydrogenase subunit 6 [Oenothera parviflora]
 gi|22256938|sp|Q9MTH9|NU6C_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272335|sp|B0Z4S8|NU6C_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272336|sp|B0Z512|NU6C_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272337|sp|B0Z596|NU6C_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272338|sp|B0Z5I0|NU6C_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|6723812|emb|CAB67223.1| NADH dehydrogenase subunit 6 [Oenothera elata subsp. hookeri]
 gi|159793000|gb|ABW98756.1| NADH dehydrogenase subunit 6 [Oenothera argillicola]
 gi|159793170|gb|ABW98924.1| NADH dehydrogenase subunit 6 [Oenothera biennis]
 gi|159895524|gb|ABX10089.1| NADH dehydrogenase subunit 6 [Oenothera glazioviana]
 gi|159895609|gb|ABX10173.1| NADH dehydrogenase subunit 6 [Oenothera parviflora]
          Length = 176

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+    VV + NPI+S FSL    V  +  F L  + FVA   L++YVGA+ V  LF +M
Sbjct: 20  IVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVM 79

Query: 76  ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            +       D+ +             S FI ++   L       +  +   ++      G
Sbjct: 80  FMNGSEYSKDLTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIG 139

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           N+ + IG  L T +  P E+   ILL+S+IGAI
Sbjct: 140 NS-QQIGIHLSTDFFLPFELISIILLVSLIGAI 171


>gi|269794082|ref|YP_003313537.1| NADH dehydrogenase subunit J [Sanguibacter keddieii DSM 10542]
 gi|269096267|gb|ACZ20703.1| NADH dehydrogenase subunit J [Sanguibacter keddieii DSM 10542]
          Length = 290

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 50/77 (64%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          +++ F+  + + ++++  ++  R  +++   ++F  V  A +++ L A F+ ++ +VVY 
Sbjct: 6  EAVLFWCLAPLMVVAALGLLFARKAVHATLCVVFVMVCLAVMYVALEAPFLGIVQIVVYT 65

Query: 64 GAVIVFFLFIIMMLDID 80
          GAV++ FLF+IM++ +D
Sbjct: 66 GAVMMLFLFVIMLVGVD 82


>gi|332971770|gb|EGK10718.1| NADH-quinone oxidoreductase subunit J [Desmospora sp. 8437]
          Length = 168

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ +  AI  +  ++     ++ V SL F  ++ AG+++LL AEF+A+  +++Y G+V 
Sbjct: 11  FFVLAVCAIGGAVFMLNFTRVVHMVLSLAFTLLSIAGIYVLLNAEFLAVAQVLIYTGSVS 70

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  LF IM+     +    R    F     +G L   LI       +++   E S    K
Sbjct: 71  ILMLFGIMLTRHRDQEETVRPWHSFFSFVGVGALFGILI-----HTIYNTPFEESTASVK 125

Query: 128 GNNVENIGKVLYTQYAYPLE 147
              V  +G++++ QY  P E
Sbjct: 126 EFTVSRLGEIVFKQYVIPFE 145


>gi|139389151|ref|YP_001123868.1| NADH dehydrogenase subunit 6 [Nasturtium officinale]
 gi|221272333|sp|A4QLY8|NU6C_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134287074|dbj|BAF50693.1| NADH dehydrogenase ND6 [Nasturtium officinale]
          Length = 176

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 26/151 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130
                 L +   GI +   +VC +  ++FS    +    + G                +N
Sbjct: 90  SN----LWTVGNGITS---LVCTT--ILFSLMSTILDTSWYGVIWTTRLNQILEQDLISN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL+++IGAI
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|317153006|ref|YP_004121054.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316943257|gb|ADU62308.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 169

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 11/171 (6%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V+  + F +++ + I  S   V+  + + ++  LI   V  AG++LLL + F+A + L++
Sbjct: 3   VLAKVAFGIYTAVIIGGSVFAVSSTSLVRALVGLITTLVGVAGMYLLLASPFMAFMQLLI 62

Query: 62  YVGAVIVFFLFIIMMLDI----DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           YVGAV V   F +M+       D     P K      ++  G+ A         ++V + 
Sbjct: 63  YVGAVSVLIFFAVMLTRAESGGDESAPAPMK------TYVFGLAATIAPAAVLGWLVMTR 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + S  +    +++ +G+ L   Y  P E+   IL+++M GA++L    R
Sbjct: 117 PVQ-SIAIPTEVDIKQLGEGLLGTYFLPFELISVILMVAMAGAVLLTWEKR 166


>gi|227497689|ref|ZP_03927898.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
 gi|226832866|gb|EEH65249.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
          Length = 286

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F + + + ++    ++T +  + +  ++I   +  A L++   A F+ +  +VVY 
Sbjct: 22  ETILFAVVALVTVVCGIGLLTAKRAVSAAVNMIAIMIALAVLYIANEAPFLGITQIVVYT 81

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVCASNFMVFSAEG 119
           GAV+   LF++M++ +  +  EP    G   + +I    G+  A L+        F    
Sbjct: 82  GAVMTLVLFVVMLVGVGGD--EPVGSAGSPATKWIIALFGLGLAVLVAGVVWRTQFPDAA 139

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            L +   +G    ++  +L+ Q+   +E++G +L+++  GA  L L HR+ I+
Sbjct: 140 GLDQ--GQGAAPADLATLLFGQHVVAMELTGLLLIVAATGA--LTLTHRQRIR 188


>gi|183217792|ref|YP_001837412.1| NADH dehydrogenase subunit 6 [Guizotia abyssinica]
 gi|221272325|sp|B2LMP5|NU6C_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|179366307|gb|ACB86578.1| NADH-plastoquinone oxidoreductase subunit 6 [Guizotia abyssinica]
          Length = 176

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVFVCISLFYILANSHFVAAAQLLIYVGAINVLIIFAVMFIN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132
             K   L +   G+ +   +VC S F+ + +   + S        K N         N +
Sbjct: 86  YSKDFHLWTVGDGVTS---VVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E    ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFLPFEFISIILLVALIGAI 171


>gi|50346838|ref|YP_053209.1| NADH dehydrogenase subunit 6 [Nymphaea alba]
 gi|75275853|sp|Q6EVZ7|NU6C_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|50250383|emb|CAF28649.1| NADH dehydrogenase ND6 subunit [Nymphaea alba]
          Length = 177

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 26/168 (15%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+    VV + NPIYS FSL    V  +  ++   + FVA   L++YVGA+ V  LF +M
Sbjct: 20  IVGGLGVVLLTNPIYSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLILFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------- 128
            ++         +   +   + +G     L VC S F  FS    +    + G       
Sbjct: 80  FMN-------GSEYYNYFHFWTVGDGFTSL-VCTSIF--FSLIATIPNTSWYGIIWTTRS 129

Query: 129 ---------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                    +NV+ IG  L T +  P E+   ILL+S++GAI +  R 
Sbjct: 130 NQIIEQDLTSNVQQIGIHLSTDFYLPFELISIILLVSLVGAIAMARRE 177


>gi|139389857|ref|YP_001123517.1| NADH dehydrogenase subunit 6 [Crucihimalaya wallichii]
 gi|221272318|sp|A4QKY7|NU6C_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286719|dbj|BAF50342.1| NADH dehydrogenase ND6 [Crucihimalaya wallichii]
          Length = 176

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 16/146 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGI--LAAELIVC--ASNFMVFSAEG-----ELSRLVFKG--NNVENIG 135
                 L +   GI  L    I+C   S  +  S  G      L++++ +   +N + IG
Sbjct: 90  FN----LWTVGNGITSLVCTTILCLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAI 161
             L T +  P E+   ILL+++IGAI
Sbjct: 146 IHLSTDFFLPFELISIILLVALIGAI 171


>gi|269955286|ref|YP_003325075.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303967|gb|ACZ29517.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 301

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 94/190 (49%), Gaps = 7/190 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F + + + +I++  ++  +  +++   ++F  ++ A L++   A F+ ++ +VVY 
Sbjct: 7   EAALFGVLAPLMVIAALGLLFAKRAVHAAMCVVFVMISLAILYVANEAPFLGIVQVVVYT 66

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV++ FLF++M++ +D   +     RG  ++G  F   L   L+   +   +  A G  
Sbjct: 67  GAVMMLFLFVLMLVGVDAADSLTETIRGQRWIGVLFGAGLLVVLLTVLARTDLPPAIG-- 124

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISK 178
             L     N   +  +L+  Y   +E+ G +L+ + +  +VL  R R   R  +R   ++
Sbjct: 125 LDLANAQTNPTGLAAILFGDYVIGMEVIGVLLVTAALAGLVLTHRRRLGPRRSQRTMAAE 184

Query: 179 QLESNPDNSI 188
           ++   PD  +
Sbjct: 185 RVAGLPDGQV 194


>gi|226227800|ref|YP_002761906.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca
          T-27]
 gi|226090991|dbj|BAH39436.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca
          T-27]
          Length = 169

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 48/77 (62%)

Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
          F  +A++S+  ++ ++ P+    +LI + ++   ++ LLG  F+A   +++YVGAV+VF 
Sbjct: 6  FGLLALVSAASMLVLKEPMRVALALITSMMSLGAIYGLLGVHFIAAFQVLIYVGAVMVFM 65

Query: 71 LFIIMMLDIDIEVAEPR 87
          +++IM+L +      PR
Sbjct: 66 VYVIMLLQVRESPNNPR 82


>gi|50510208|dbj|BAD31376.1| chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica Group]
          Length = 172

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 24/151 (15%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NP +S FSL    V  +    L  + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPTFSAFSLGLVLVCIS----LFNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 81

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-----------RLVFKG--NNVE 132
             K + F   + IG     L+     F + +   + S           ++V +G  NNV+
Sbjct: 82  WSKDKNF---WTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQ 138

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 139 QIGIHLATDFYLPFELISIILLVSLIGAITM 169


>gi|157325586|ref|YP_001468364.1| NADH dehydrogenase subunit 6 [Ipomoea purpurea]
 gi|221272327|sp|A7Y3L7|NU6C_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|157056814|gb|ABV02404.1| NADH-plastoquinone oxidoreductase subunit 6 [Ipomoea purpurea]
          Length = 176

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV   NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M
Sbjct: 20  ILGSIGVVLFPNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLILFAVM 79

Query: 76  ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            L       D  +             S FI +++  L       +  +   ++       
Sbjct: 80  FLNGSEYSNDFPLWTLGDGITSQVCISLFISLISTILDTSWYGIIWTTRSNQIIEQDLIS 139

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           N+ + IG  L T +  P E+   ILL+++IGAIV+
Sbjct: 140 NS-QQIGIHLSTDFFLPFELISIILLVALIGAIVI 173


>gi|283953817|ref|ZP_06371348.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794858|gb|EFC33596.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           414]
          Length = 172

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 10/159 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  + F +M  D  
Sbjct: 20  IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79

Query: 81  IEVAEPRK-KRGFLGSFFIGILAAELIVC---ASNFMVFSAEGELSRLVFKGNNVENIGK 136
            E  E  K K+ F G   + IL+A L++       +   S +  L+ L     N + +  
Sbjct: 80  KEFKEQLKAKKSFFG---LVILSAVLLLAMFIGFKYQSVSTDLALNDLALFDFN-KQLAL 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            ++++Y    E    +LL++++ AI   L H+   K + 
Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIT--LTHKELTKEKQ 172


>gi|260171807|ref|ZP_05758219.1| NADH dehydrogenase I, chain J [Bacteroides sp. D2]
 gi|315920119|ref|ZP_07916359.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693994|gb|EFS30829.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 170

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS---NFMVFSAE 118
           Y G ++V ++F I++   + + AE  K+   L      I    +I+  +   NFM     
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKVKRSKLLAGLITMIAGLAIILTITLKHNFM----- 118

Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILL 154
            + + L  +  ++  IG  L +  +Y Y  P E    +LL
Sbjct: 119 -QTANLAPQEIDIHAIGNALLSSDKYGYILPFEAVSILLL 157


>gi|309322124|ref|YP_003933940.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum]
 gi|197131408|gb|ACH47222.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum]
 gi|300069217|gb|ADJ66339.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum]
          Length = 176

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N IYS F+L   F+  +  ++L  + FVA   L++YVGA+ +  LF +M L+     +E 
Sbjct: 31  NLIYSAFALGLVFICISLFYILANSHFVAAAQLLIYVGAINILILFAVMFLN----GSES 86

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVFKG-----------NNVE 132
            K   F G+   G   A  +VC + F+   +   +    R+++             +N +
Sbjct: 87  SKDSRF-GTVGDG---ATSLVCTTLFLSLISNILDTSWYRIIWTTRATQIIEKDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 143 QIGIRLSTDFFLPFELISIILLVALIGAI 171


>gi|154508647|ref|ZP_02044289.1| hypothetical protein ACTODO_01148 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798281|gb|EDN80701.1| hypothetical protein ACTODO_01148 [Actinomyces odontolyticus ATCC
           17982]
          Length = 325

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 72/140 (51%), Gaps = 1/140 (0%)

Query: 30  YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89
           +SV  ++   +  A L++   A F+ +  +VVY GA+++ FLF+IM++ I       R+ 
Sbjct: 41  HSVICMVGVMLGLAVLYIANSAPFLGVAQIVVYTGAIMMLFLFVIMLIGIGTSDDYARQS 100

Query: 90  RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL-VFKGNNVENIGKVLYTQYAYPLEI 148
           RG + +  +G L   +IV  +      A  +   +  +    + ++   L+ ++   +E+
Sbjct: 101 RGAIVAAVLGGLGLIVIVTTAILKAVPAPHKPVEVDPYSNQPITDLAITLFQEHWLSMEL 160

Query: 149 SGFILLLSMIGAIVLMLRHR 168
           +G +L+ + +GA++L    R
Sbjct: 161 AGGLLITAAVGAMLLTHSDR 180


>gi|293191759|ref|ZP_06609283.1| NADH dehydrogenase I, J subunit [Actinomyces odontolyticus F0309]
 gi|292820452|gb|EFF79435.1| NADH dehydrogenase I, J subunit [Actinomyces odontolyticus F0309]
          Length = 325

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 72/140 (51%), Gaps = 1/140 (0%)

Query: 30  YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89
           +SV  ++   +  A L++   A F+ +  +VVY GA+++ FLF+IM++ I       R+ 
Sbjct: 41  HSVICMVGVMLGLAVLYIANSAPFLGVAQIVVYTGAIMMLFLFVIMLIGIGTSDDYARQS 100

Query: 90  RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL-VFKGNNVENIGKVLYTQYAYPLEI 148
           RG + +  +G L   +IV  +      A  +   +  +    + ++   L+ ++   +E+
Sbjct: 101 RGAIVAAVLGGLGLIVIVTTAILKAVPAPHKPVEVDPYSNQPITDLAITLFQEHWLSMEL 160

Query: 149 SGFILLLSMIGAIVLMLRHR 168
           +G +L+ + +GA++L    R
Sbjct: 161 AGGLLITAAVGAMLLTHSDR 180


>gi|242910154|ref|YP_002970698.1| NADH-plastoquinone oxidoreductase subunit 6 [Alsophila spinulosa]
 gi|218454823|gb|ACK77160.1| NADH-plastoquinone oxidoreductase subunit 6 [Alsophila spinulosa]
          Length = 195

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++ S  VV++ N ++S F L   F   +  +L+L A+ +A   L+VYVGA+ V  +  + 
Sbjct: 20  LLGSLGVVSLANVVHSAFLLGLVFTRISLSYLVLNADSLAAAQLLVYVGAINVLIVSAVT 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE----GELSRLVFKG--N 129
           + D   E   P     +   +FI + A   +   S  M++S       E   LV K   N
Sbjct: 80  VTD---EPTSPNSTTNWSIGYFITLGACTGLFSLSTIMIYSTRWSIVNESKILVEKTSEN 136

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           NV+ +G  L T +  P E+   +LL++++GAI L
Sbjct: 137 NVQGLGYKLLTTFLVPFELLSILLLVALVGAITL 170


>gi|257387969|ref|YP_003177742.1| NADH dehydrogenase subunit J [Halomicrobium mukohataei DSM 12286]
 gi|257170276|gb|ACV48035.1| NADH dehydrogenase subunit J [Halomicrobium mukohataei DSM 12286]
          Length = 90

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          +++ F LF+ + I SS+ VV VR+  +S   L  A ++ A  +L+L AEFVA + ++VYV
Sbjct: 6  ETIAFVLFAVVTIASSWGVVLVRDVWHSALLLGVALLSVAVHYLMLRAEFVAAMQILVYV 65

Query: 64 GAVIVFFLFIIMMLDIDIEVAE 85
          G V++   F +M+   D  V E
Sbjct: 66 GGVLILITFAVMLTRKDESVVE 87


>gi|124302959|ref|YP_001023754.1| NADH dehydrogenase subunit 6 [Angiopteris evecta]
 gi|221272308|sp|A2T386|NU6C_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|110628357|gb|ABG79653.1| NADH-plastoquinone oxidoreductase subunit 6 [Angiopteris evecta]
          Length = 197

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 24/177 (13%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            N +YS   L   F+  + L+L+L A+FVA   +++YVGAV V  +F +M++D       
Sbjct: 30  TNIVYSALLLGLVFICISLLYLVLNADFVAAAQVLIYVGAVNVLTVFAVMLID------- 82

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFS------------AEGELSRLVFKG--NNV 131
            + K   L SF        L VC S F++ +               + ++ V +G   +V
Sbjct: 83  -KPKNITLFSFSNVGDNITLGVCTSLFILLTIMIPDASWSEIYMTKQSTKFVEQGLTTDV 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188
           + IG  L T++  P E+   +LL+++IGAI +  R  R ++  D +K  ES  D S+
Sbjct: 142 QLIGSQLLTKFLLPFELLSILLLVALIGAITIA-RQERIVEIDD-NKASESKEDLSL 196


>gi|94502543|ref|YP_588170.1| NADH dehydrogenase subunit 6 [Helianthus annuus]
 gi|281190757|ref|YP_003330996.1| NADH dehydrogenase subunit 6 [Parthenium argentatum]
 gi|122179550|sp|Q1KXQ6|NU6C_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|88656947|gb|ABD47198.1| NADH-plastoquinone oxidoreductase subunit 6 [Helianthus annuus]
 gi|269924870|gb|ACZ52743.1| NADH dehydrogenase subunit 6 [Parthenium argentatum]
          Length = 176

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVFVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFIN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132
             K   L +   G+ +   +VC S F+ + +   + S        K N         N +
Sbjct: 86  YSKDFHLWTVGDGVTS---VVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E    ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFIPFEFISIILLVALIGAI 171


>gi|139389697|ref|YP_001123253.1| NADH dehydrogenase ND6 [Arabis hirsuta]
 gi|221272309|sp|A4QK73|NU6C_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286452|dbj|BAF50078.1| NADH dehydrogenase ND6 [Arabis hirsuta]
          Length = 176

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 26/156 (16%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D 
Sbjct: 26  VVLLPNPIFSAFSLGFVLVCISLLYILANSHFVAAAQLLIYVGAINVLIIFAVMFMN-DS 84

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------------- 128
           E          L +   GI +   +VC +  ++FS    +    + G             
Sbjct: 85  EYFTDFN----LWTVGDGITS---LVCTT--LLFSLISTILDTSWYGVIWTTRLNQILEQ 135

Query: 129 ---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 136 DLISNSQQIGSHLSTDFFLPFELISIILLVALIGAI 171


>gi|325610548|gb|ADZ36490.1| NADH dehydrogenase subunit 6 [Stewartia rubiginosa]
 gi|325610574|gb|ADZ36513.1| NADH dehydrogenase subunit 6 [Stewartia monadelpha]
 gi|325610594|gb|ADZ36530.1| NADH dehydrogenase subunit 6 [Stewartia sinensis]
          Length = 176

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M ++   
Sbjct: 26  VILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN------- 129
                  K   L +   GI +   +VC S F+       +     +++  K N       
Sbjct: 83  --GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATKSNQILEQDL 137

Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
             N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 138 ISNSQKIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|114107186|ref|YP_740170.1| NADH-plastoquinone oxidoreductase subunit 6 [Daucus carota]
 gi|122221298|sp|Q0G9Q9|NU6C_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|113200961|gb|ABI32477.1| NADH-plastoquinone oxidoreductase subunit 6 [Daucus carota]
          Length = 176

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 22/151 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132
             K   L +   G+ +   +VC S F+ + +   + S        K N         N +
Sbjct: 86  YYKDFHLWTVGDGVTS---MVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 143 QIGIHLSTDFFLPFELISIILLVSLIGAITV 173


>gi|325610566|gb|ADZ36506.1| NADH dehydrogenase subunit 6 [Stewartia serrata]
          Length = 176

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M ++   
Sbjct: 26  VILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN------- 129
                  K   L +   GI +   +VC S F+       +     +++  K N       
Sbjct: 83  --GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATKSNHILEQDL 137

Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
             N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 138 ISNSQKIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|153012162|ref|YP_001381677.1| NADH-plastoquinone oxidoreductase subunit 6 [Medicago truncatula]
          Length = 176

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 25/176 (14%)

Query: 4   QSLFFYLFSFMA---IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           ++L  +L  F+    I+ S  VV + NPI+S FSL    V  + L++L  + FVA   L+
Sbjct: 5   ETLHDFLLVFLGSGIILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILSNSHFVAASQLL 64

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSA 117
           +YVGA+ +  +F +M ++     +    +   L +   GI    LIVC S F   +   +
Sbjct: 65  IYVGAINILIIFAVMFMN-----SSEYYQDFNLWTVGDGI---TLIVCTSIFVSLITIIS 116

Query: 118 EGELSRLVF--KGNNV---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
           +     +++  + N +         + IG  L T +  P E+   ILL+++IGAIV
Sbjct: 117 DTSWYGIIWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIV 172


>gi|156959976|gb|ABU98455.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959984|gb|ABU98461.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG + + +I ++VYVGA+ + FLF+IM+      + +P K      S F+ +    +I  
Sbjct: 1   LGLDXIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L  +  
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 169 RDIKRQDISKQLESNPD 185
                    + L S  D
Sbjct: 114 SPFLYNSHGESLRSKQD 130


>gi|290489858|gb|ADD31336.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Nerium
           oleander]
          Length = 176

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++LL + FVA   L++YVGAV V  LF +M +         
Sbjct: 31  NPIYSAFSLGLVLVCISLFYILLSSYFVAAAQLLIYVGAVNVLILFAVMFMS-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGEL----SRLVFKGN---NVE 132
             K   L +   G+ +   +VC S F+         S  G +    S  V + +   N +
Sbjct: 86  YYKDSRLWTVGDGVTS---MVCTSLFISLITTIPDTSWYGIIWTTRSNQVLEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|218295769|ref|ZP_03496565.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermus
          aquaticus Y51MC23]
 gi|218243928|gb|EED10455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermus
          aquaticus Y51MC23]
          Length = 177

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 37/52 (71%)

Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          RN I++  +LI  F+  AG+++ L A F+  I ++VY GA++V FLF+IM+L
Sbjct: 23 RNAIHAALALILNFLVLAGVYVALDARFLGFIQIIVYAGAIVVLFLFVIMLL 74


>gi|290489844|gb|ADD31329.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Aucuba
           japonica]
          Length = 175

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 22/160 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ +  VV + NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGALGVVLLPNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---- 128
            ++          K   L +   G+ +   +VC S F   M    +     +++      
Sbjct: 80  FMN-----GSEYYKDFHLWTIGDGVTS---MVCTSIFVSLMTTIPDTSWYGIIWTTRSNQ 131

Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                  +N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 132 IVEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|261187255|ref|XP_002620077.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis SLH14081]
 gi|239586520|gb|EEQ69163.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis SLH14081]
 gi|239606194|gb|EEQ83181.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis ER-3]
          Length = 202

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 7/73 (9%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          LFS   IIS       +NP+ S+F LI  F++ +     +G EF+ +  L+VYVGAV + 
Sbjct: 26 LFSLYTIIS-------KNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAVSIL 78

Query: 70 FLFIIMMLDIDIE 82
          FLFI+M+++I I 
Sbjct: 79 FLFILMLINIRIS 91


>gi|84494921|ref|ZP_00994040.1| NADH dehydrogenase subunit J [Janibacter sp. HTCC2649]
 gi|84384414|gb|EAQ00294.1| NADH dehydrogenase subunit J [Janibacter sp. HTCC2649]
          Length = 269

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 95/198 (47%), Gaps = 15/198 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +A++ +  ++  R  +++   +    +     +L  GA+F+ +I + VY 
Sbjct: 6   EAILFWVLAPLAVVGALGLIFARKAVHAALGMALTMIILGVFYLAQGADFLGVIQIFVYT 65

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-E 120
           GAV++ FLF++M++ +D    + E  K +    +     L A L+       +  A   +
Sbjct: 66  GAVMMLFLFVVMLVGVDSSDSIVETLKGQRAAATVLTLGLGALLMGAIGRITIGDAPANK 125

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           L  +     NV  + ++++ +Y +  E +  +L+ + + A+VL  R R           L
Sbjct: 126 LDAINTDKGNVSGVAELIFGRYVWVFEATSALLITAALAAMVLAHRER-----------L 174

Query: 181 ESNPDN-SIVMVKVKSGK 197
            S PD  +    +++SG+
Sbjct: 175 GSRPDQRAWSERRIRSGE 192


>gi|326402931|ref|YP_004283012.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum
           AIU301]
 gi|325049792|dbj|BAJ80130.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum
           AIU301]
          Length = 166

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + +A++++ +++T  + ++ +  L  + +  A +F +LGA F A + +++Y GA++
Sbjct: 5   FVISAIIAVVATAMMITRPSAVHGLLYLTVSLLAVALVFFVLGAPFAAALEVIIYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML+I  E A   +      + ++G     L++      V +  G L      
Sbjct: 65  VLFVFVIMMLNIG-EAAARLESSWLHPATWVGPSILALLLAIELGAV-AVSGGLPHPATS 122

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             +   +G  L   Y   +E++ F+LL  ++ A  L     R I   D
Sbjct: 123 VISAHAVGVALVGPYMLAVELASFLLLAGLVAAFHL----GRSIMGTD 166


>gi|314965049|gb|EFT09148.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL082PA2]
          Length = 284

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 103/208 (49%), Gaps = 12/208 (5%)

Query: 1   MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           MV  S + F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ +
Sbjct: 14  MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73

Query: 60  VVYVGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +VY GA+++ FLF++M++ +D    + E  K            L   LI+   N +    
Sbjct: 74  IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALALVVLLILAVGNAVTTDV 133

Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169
            G    +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++
Sbjct: 134 IGTDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKK 193

Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196
             +R+ ++ ++ +  ++ S   V+  SG
Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221


>gi|139388149|ref|YP_001123340.1| NADH dehydrogenase ND6 [Barbarea verna]
 gi|221272310|sp|A4QKG0|NU6C_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286540|dbj|BAF50165.1| NADH dehydrogenase ND6 [Barbarea verna]
          Length = 176

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 26/151 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130
                 L +   GI +   +VC +  ++FS    +    + G                +N
Sbjct: 90  LN----LWTVGNGITS---LVCTT--ILFSLMSTILDTSWYGVIWTTRLNQILEQDLISN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL+++IGAI
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|81238365|gb|ABB60024.1| NADH dehydrogenase subunit 6 [Calyptrophora japonica]
          Length = 151

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 16/130 (12%)

Query: 40  VNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
           VNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ 
Sbjct: 1   VNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLP 54

Query: 100 I------LAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
           +      L   L+  +  ++        S ++    N+  IG  LYT Y   + ++  +L
Sbjct: 55  VGLSVIFLFYSLLTNSPKYI----SSTHSPVIGSRTNIGAIGSHLYTTYYELVLVASLVL 110

Query: 154 LLSMIGAIVL 163
           L++M+GAI+L
Sbjct: 111 LVAMVGAILL 120


>gi|108796692|ref|YP_636526.1| NADH dehydrogenase subunit 6 [Zygnema circumcarinatum]
 gi|122211732|sp|Q32RK0|NU6C_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|61393676|gb|AAX45818.1| subunit 6 of NADH-plastoquinone oxidoreductase [Zygnema
           circumcarinatum]
          Length = 181

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            +L F +  F  ++ +  VV +   IYS   L F F+  A L+LLL A+F+A   +++YV
Sbjct: 9   NTLLFVVLEFAILVGALGVVLLSRVIYSALLLGFVFICVALLYLLLNADFLAAAQVLIYV 68

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97
           GAV V  +F IM++    +V    K  G + S F
Sbjct: 69  GAVNVLIVFAIMLVSTPDDVKNKPKTTGEIISAF 102


>gi|156598197|gb|ABU85362.1| NADH-plastoquinone oxidoreductase subunit 6 [Elaeis oleifera]
          Length = 176

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 26/158 (16%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++   
Sbjct: 26  VVLLTNPIFSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------------- 128
                     +  +   G+ +   +VC S  ++FS    +    + G             
Sbjct: 83  --GSEYSNDSYFWTIGDGVTS---LVCTS--ILFSLITIIPDTSWYGIFWTTRSSQIMEQ 135

Query: 129 ---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
              +N++ IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 136 DLISNIQQIGIHLSTDFYLPFELISIILLVSLIGAITM 173


>gi|156959972|gb|ABU98452.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959996|gb|ABU98470.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960012|gb|ABU98482.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 141

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ +    +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + +  S +   + ++    N+  IG  LYT Y   + I+  +L ++MIGAI+L  +  
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLXVAMIGAILLAKQPS 113

Query: 169 RDIKRQDISKQLESNPD 185
                    + L S  D
Sbjct: 114 SPFLYNSHGESLRSKQD 130


>gi|81238355|gb|ABB60019.1| NADH dehydrogenase subunit 6 [Narella alaskensis]
 gi|81238357|gb|ABB60020.1| NADH dehydrogenase subunit 6 [Narella arbuscula]
 gi|81238359|gb|ABB60021.1| NADH dehydrogenase subunit 6 [Narella cristata]
 gi|81238361|gb|ABB60022.1| NADH dehydrogenase subunit 6 [Narella bayeri]
 gi|81238363|gb|ABB60023.1| NADH dehydrogenase subunit 6 [Narella abyssalis]
 gi|81238367|gb|ABB60025.1| NADH dehydrogenase subunit 6 [Primnoa pacifica var. willeyi]
          Length = 151

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 16/130 (12%)

Query: 40  VNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
           VNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P K      S F+ 
Sbjct: 1   VNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLP 54

Query: 100 I------LAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
           +      L   L+  +  ++        S ++    N+  IG  LYT Y   + ++  +L
Sbjct: 55  VGLSVIFLFYSLLTNSPKYI----SSTHSPVIGSRTNIGAIGSHLYTTYYELVLVASLVL 110

Query: 154 LLSMIGAIVL 163
           L++M+GAI+L
Sbjct: 111 LVAMVGAILL 120


>gi|11466304|ref|NP_051132.1| NADH dehydrogenase subunit 6 [Cafeteria roenbergensis]
 gi|6180086|gb|AAF05783.1|AF193903_6 NADH dehydrogenase subunit 6 [Cafeteria roenbergensis]
          Length = 250

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 20/173 (11%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N I+S+  L+  F+  + L      EF+ +I L++Y+GA++V FLF++MMLDI     + 
Sbjct: 26  NTIHSLLLLLELFIIGSLLLFFFKVEFLGLIFLMIYLGAILVLFLFVVMMLDIKTTAVQN 85

Query: 87  RKKRGF----LGSF-----FIGILAAELIVCASNFMVFSAEG----------ELSRLVFK 127
                F    LG F     F+  +  ++I  ++ +  F              +  +L+  
Sbjct: 86  DDLNQFIFKGLGLFFFIPVFVWWIFGDVIFLSAMWQSFVKTAVHWSFSLSILDFFQLINF 145

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            +N+E +G  ++        + G IL ++MIGAIV+ +  + +   Q I   L
Sbjct: 146 SSNLEVVGWYIFDFQPILFLLCGVILYIAMIGAIVVSVDSQMN-SNQKIQNAL 197


>gi|52220864|ref|YP_087019.1| NADH dehydrogenase subunit 6 [Panax ginseng]
 gi|75254100|sp|Q68RV3|NU6C_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|51235367|gb|AAT98563.1| NADH dehydrogenasesubunit 6 [Panax ginseng]
          Length = 176

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132
             K   L +   G+ +   +VC S F+ + +   + S        K N         N +
Sbjct: 86  YYKDFHLWTIGDGVTS---MVCTSIFVSLITTIPDTSWYGIIWTTKSNQIIEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|17063207|gb|AAL32512.1| NADH dehydrogenase subunit 6 [Daucus carota]
          Length = 121

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
          S +A++S+ +VV  +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FL
Sbjct: 7  SSLALVSALMVVRAKNPVHSVSFSIPVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVSFL 66

Query: 72 FIIMMLDIDI-EVAE 85
          F+ MM  I I E+ E
Sbjct: 67 FVGMMFHIQIAEIHE 81


>gi|7525088|ref|NP_051112.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
 gi|2499298|sp|Q95695|NU6C_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|1619279|emb|CAA67670.1| ndhG [Arabidopsis thaliana]
 gi|5881749|dbj|BAA84440.1| NADH dehydrogenase ND6 [Arabidopsis thaliana]
          Length = 176

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 8/142 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----ELSRLVFKG--NNVENIGKVLY 139
                        +    L +  S  +  S  G     +L++++ +   +N + IG  L 
Sbjct: 90  FNLWTIGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAI 161
           T +  P E+   ILL+++IGAI
Sbjct: 150 TDFFLPFELISIILLVALIGAI 171


>gi|242090093|ref|XP_002440879.1| hypothetical protein SORBIDRAFT_09g012611 [Sorghum bicolor]
 gi|241946164|gb|EES19309.1| hypothetical protein SORBIDRAFT_09g012611 [Sorghum bicolor]
          Length = 67

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%)

Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
          A++S  +VV  +NP++SV   I  F + +GL +LLG +F  MI  VV++GA+ V FL
Sbjct: 9  ALVSGLMVVRAKNPVHSVLFPILVFYDTSGLLILLGLDFSTMIFPVVHIGAIAVSFL 65


>gi|295136962|ref|YP_003587796.1| NADH dehydrogenase subunit 6 [Lathyrus sativus]
 gi|293338684|gb|ADE43656.1| NADH dehydrogenase subunit 6 [Lathyrus sativus]
          Length = 176

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 22/152 (14%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  + L++L  + FVA   L++YVGA+ +  +F +M ++     + 
Sbjct: 30  TNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLIYVGAINILIIFAVMFMN-----SS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVF--KGNNV--------- 131
              +   L +   GI    LIVC S F   +   ++     +++  + N +         
Sbjct: 85  EYYQDLNLWTVGDGI---TLIVCTSIFVSLITIISDTSWYGIIWTTRPNQIIEQDLISTS 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           + IG  L T +  P E+   ILL+S+IGAIV+
Sbjct: 142 QQIGIHLSTDFFLPFELISIILLVSLIGAIVV 173


>gi|289474479|gb|ADC97857.1| NADH dehydrogenase subunit 6 [Paragorgia kaupeka]
          Length = 154

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 7/108 (6%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+      + +P +      
Sbjct: 2   LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNQVDYQDH 55

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142
           S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y
Sbjct: 56  SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGSRTNIGAIGSHLYTTY 102


>gi|115391956|ref|YP_778544.1| NADH dehydrogenase subunit 6 [Jasminum nudiflorum]
 gi|122164926|sp|Q06R77|NU6C_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|110456277|gb|ABG74682.1| NADH degydrogenase subunit 6 [Jasminum nudiflorum]
          Length = 176

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 26/164 (15%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + NPIYS FSL       +  ++LL + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVFLPNPIYSAFSLGLVLFCISLFYILLNSYFVAAAQLLIYVGAINVLIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--------------MVFSAEGEL 121
            ++          K  +L +   G+ +   +VC S F              ++++ +   
Sbjct: 80  FMN-----GSEYYKDFYLWTVGDGVTS---MVCTSLFISLITTIPDTSWYGIIWTTKS-- 129

Query: 122 SRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           ++++ K   +N + IG  L T +  P E+   ILL+++IGAI +
Sbjct: 130 NQIIEKDLISNSQQIGIHLVTDFFLPFELISIILLVALIGAIAI 173


>gi|295137003|ref|YP_003587550.1| NADH dehydrogenase subunit 6 [Pisum sativum]
 gi|293338575|gb|ADE43548.1| NADH dehydrogenase subunit 6 [Pisum sativum]
          Length = 176

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 22/152 (14%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  + L++L  + FVA   L++YVGA+ +  +F +M ++       
Sbjct: 30  TNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLIYVGAINILIIFAVMFMN------- 82

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVF--KGNNV--------- 131
             +    L  + +G     LIVC S F   +   ++     +++  + N +         
Sbjct: 83  SSEYYQDLNLWTVGD-GMTLIVCTSIFVSLITIISDTSWYGIIWTTRPNQIIEQDLISTS 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           + IG  L T +  P E+   ILL+S+IGAIV+
Sbjct: 142 QQIGIHLSTDFFLPFELISIILLVSLIGAIVV 173


>gi|139387308|ref|YP_001123428.1| NADH dehydrogenase subunit 6 [Capsella bursa-pastoris]
 gi|221272313|sp|A4QKP8|NU6C_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286629|dbj|BAF50253.1| NADH dehydrogenase ND6 [Capsella bursa-pastoris]
          Length = 176

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 8/142 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----ELSRLVFKG--NNVENIGKVLY 139
                        +    L +  S  +  S  G     +L++++ +   +N + IG  L 
Sbjct: 90  FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAI 161
           T +  P E+   ILL+++IGAI
Sbjct: 150 TDFFLPFELISIILLVALIGAI 171


>gi|55980062|ref|YP_143359.1| NADH-quinone oxidoreductase subunit 10 [Thermus thermophilus HB8]
 gi|2499299|sp|Q56225|NQO10_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 10; AltName:
          Full=NADH dehydrogenase I chain 10; AltName: Full=NDH-1
          subunit 10
 gi|1279870|gb|AAA97947.1| NADH dehydrogenase I, subunit NQO10 [Thermus thermophilus]
 gi|55771475|dbj|BAD69916.1| NADH-quinone oxidoreductase chain 10 [Thermus thermophilus HB8]
          Length = 176

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 37/52 (71%)

Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          RN I++  +LI  F+  AG+++ L A F+  I ++VY GA++V FLF+IM+L
Sbjct: 23 RNAIHAALALILNFLVLAGVYVALDARFLGFIQVIVYAGAIVVLFLFVIMLL 74


>gi|148260116|ref|YP_001234243.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Acidiphilium
           cryptum JF-5]
 gi|146401797|gb|ABQ30324.1| NADH dehydrogenase subunit J [Acidiphilium cryptum JF-5]
          Length = 166

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + +A++++ +++T  + ++ +  L  + +  A +F +LGA F A + +++Y GA++
Sbjct: 5   FVISAIIAVVATAMMITRPSAVHGLLYLTVSLLAVALVFFVLGAPFAAALEVIIYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML+I  E A   +      + ++G     L++      V +  G L      
Sbjct: 65  VLFVFVIMMLNIG-EAAARLESSWLHPATWVGPSILALLLAIELGAV-AVSGGLRHPATS 122

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             +   +G  L   Y   +E++ F+LL  ++ A  L     R I   D
Sbjct: 123 VISAHAVGVALVGPYMLAVELASFLLLAGLVAAFHL----GRSIMGTD 166


>gi|212693816|ref|ZP_03301944.1| hypothetical protein BACDOR_03337 [Bacteroides dorei DSM 17855]
 gi|212663705|gb|EEB24279.1| hypothetical protein BACDOR_03337 [Bacteroides dorei DSM 17855]
          Length = 167

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 9/172 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q + F + +    I S L VT    + +   L+F     AG++  L   F+  + L+
Sbjct: 1   MTLQLIVFIVLALFIAICSVLAVTTSRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y G + V ++F I++     + AE R K G + +  I  +A  L +C   F++   E  
Sbjct: 61  IYAGGITVLYVFSILLTSSQGDKAE-RLKNGKMVAGAISTIAG-LAICL--FVMLKNEFL 116

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168
            S  V    +V  IG  L      QY  P E+   +LL  ++G I L+ R R
Sbjct: 117 PSHFVHGELDVRTIGHALMGMEKYQYILPFEVISVLLLACIVGGI-LIARKR 167


>gi|114329710|ref|YP_740530.1| NADH-plastoquinone oxidoreductase subunit 6 [Citrus sinensis]
 gi|122166138|sp|Q09MC3|NU6C_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|113952676|gb|ABI49074.1| NADH-plastoquinone oxidoreductase subunit 6 [Citrus sinensis]
          Length = 178

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 24/152 (15%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGAV V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
              K   L  + IG     L VC S F  FS    +    + G                +
Sbjct: 85  DYSKDFQLNLWTIGDGLTSL-VCTSIF--FSLITTILDTSWYGIIWTTRANQIIEQDLIS 141

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 142 NSQQIGIHLSTDFFLPFELVSIILLVALIGAI 173


>gi|121720667|ref|YP_001001587.1| NADH-plastoquinone oxidoreductase subunit 6 [Nuphar advena]
 gi|221272334|sp|A1XG08|NU6C_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|84682258|gb|ABC60512.1| NADH-plastoquinone oxidoreductase subunit 6 [Nuphar advena]
          Length = 177

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 30/170 (17%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+    VV + NPIYS FS     V  +  ++   + FVA   L++YVGA+ V  LF +M
Sbjct: 20  IVGGLGVVLLTNPIYSAFSSGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLILFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAEL--IVCASNFMVFSAEGELSRLVFKG----- 128
            ++             +  SF    +      +VC S F  FS    +    + G     
Sbjct: 80  FMN----------GSEYYNSFHFWTIGDGFTSVVCTSIF--FSLIATIPNTSWYGIIWTT 127

Query: 129 -----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                      +NV+ IG  L T +  P E+   ILL+S++GAI +  R 
Sbjct: 128 RSNQIIEQDLTSNVQQIGIHLSTDFYLPFELISIILLVSLVGAIAMARRE 177


>gi|332826696|gb|EGJ99518.1| hypothetical protein HMPREF9455_04114 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 167

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 33/170 (19%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           + S+ + VT +  I S   L+F  +  AGL+LLL   F+  + + VY G V+V F+F I+
Sbjct: 15  VFSTIMAVTTQKIIRSATFLLFVLLGTAGLYLLLDYHFLMAVQIAVYAGGVMVLFIFAIL 74

Query: 76  MLD---IDIEVAEPRKKRGFLGSFFIGILA--AELIVCA-------SNFMVFSAEGELSR 123
           +     +D+   +P       G  F+  +   A L +C        + F  +  + EL  
Sbjct: 75  LTHEPGVDVRFEKP-------GRMFVAAVTALAGLGICGHIIFYNVNKFYTYVTQSEL-- 125

Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                  +++IG  +      QY  P E    +LL  +IG I  M+  +R
Sbjct: 126 ------QMQDIGMAMMGTDKYQYLLPFEAISVLLLACIIGGI--MIARKR 167


>gi|156598690|gb|ABU85600.1| NADH-plastoquinone oxidoreductase subunit 6 [Scaevola aemula]
          Length = 176

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 22/151 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N I S FSL F  V  +  ++L  + FVA   L++YVGA+ V  +F +M ++     +  
Sbjct: 31  NSIDSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFIN-----SSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN---------NVE 132
             K   L +   G+ +   +VC S F+       +    R+++  K N         N +
Sbjct: 86  NSKDFRLWTVGDGVTS---LVCTSLFLSLITTIPDTSWYRIIWTTKANQIIEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            IG  L T +  P E    ILL+++IGAIVL
Sbjct: 143 QIGIHLSTDFFLPFEFISIILLVALIGAIVL 173


>gi|124360819|gb|ABN08791.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Medicago
           truncatula]
          Length = 176

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 25/176 (14%)

Query: 4   QSLFFYLFSFMA---IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           ++L  +L  F+    I+ S  VV + NPI+S FSL    V  + L++L  + FVA   L+
Sbjct: 5   ETLHDFLLVFLGSGIILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILSNSHFVAASQLL 64

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSA 117
           +YVGA+ +   F +M ++     +    +   L +   GI    LIVC S F   +   +
Sbjct: 65  IYVGAINILITFAVMFMN-----SSEYYQDFNLWTVGDGI---TLIVCTSIFVSLITIIS 116

Query: 118 EGELSRLVF--KGNNV---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
           +     +++  + N +         + IG  L T +  P E+   ILL+++IGAIV
Sbjct: 117 DTSWYGIIWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIV 172


>gi|315605119|ref|ZP_07880171.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313226|gb|EFU61291.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 325

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 86/169 (50%), Gaps = 2/169 (1%)

Query: 6   LFFYLFSFMAIISSFL-VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +  ++ + +A+++  L V+  +   ++V  ++   +  A L++   A F+ +  +VVY G
Sbjct: 16  IILFVCTAIAMVACALGVLFCKKAAHAVICMVGVMLGLAILYIANSAPFMGVAQIVVYTG 75

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A+++ FLF+IM++ I       R+ RG +    +G L   LI+  +      A    S+ 
Sbjct: 76  AIMMLFLFVIMLIGIGASDDYVRQSRGAIVGSVLGGLGLALIIATAIVKSSHAAHAPSKA 135

Query: 125 VFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               +  + ++  +L+ ++   +E++G +L+ + +GA++L    R   K
Sbjct: 136 TPTSDEPITDLAIMLFQEHWLSMELAGALLITAAVGAMLLTHSDRLTAK 184


>gi|309812378|ref|ZP_07706133.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dermacoccus
           sp. Ellin185]
 gi|308433683|gb|EFP57560.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dermacoccus
           sp. Ellin185]
          Length = 170

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 9/176 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    F     ++  S+   VT R  +++   L       +G +L+LGAE VA++ L+
Sbjct: 1   MTVHDALFACLGLISAASAICAVTTRQIVHAALWLTVCLATLSGCYLVLGAELVALVQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VYVGAV+V  LF +M+         P  + G   +  +  +AA +I  A+  ++FSA   
Sbjct: 61  VYVGAVVVLVLFAVML------TRAPIGRSGDHDAPIMTRMAALVIAAATGGLLFSAFVS 114

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                R         ++ + L+ ++A+P E+   +LL +++GA+ ++   R    R
Sbjct: 115 AFGTRRARIDSGTTTDLAQNLFGRFAWPFEVVSLVLLSALVGALAMIGSRRSGGGR 170


>gi|89280689|ref|YP_514906.1| NADH dehydrogenase subunit 6 [Solanum lycopersicum]
 gi|122201762|sp|Q2MI47|NU6C_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|84372037|gb|ABC56354.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum lycopersicum]
 gi|89241725|emb|CAJ32448.1| NADH degydrogenase subunit 6 [Solanum lycopersicum]
          Length = 176

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  A FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130
             K   L +   GI +   +VC S F+  S    +S   + G                +N
Sbjct: 86  YYKDFHLWTVGDGITS---MVCISLFI--SLITTISDTSWYGIIWTTRSNQIIEQDFLSN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL+++IGAI
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|219674001|ref|YP_002456485.1| NADH-plastoquinone oxidoreductase subunit 6 [Trifolium
           subterraneum]
 gi|193788970|gb|ACF20566.1| NADH-plastoquinone oxidoreductase subunit 6 [Trifolium
           subterraneum]
          Length = 176

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 22/161 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + NPI+S FSL    V  + L++L  + FVA   L++YVGA+ +  +F +M
Sbjct: 20  ILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLIYVGAINILIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVF--KGNN 130
                +   E  +   F   + +G     LIVC S F   +    +     +++  + N 
Sbjct: 80  F----VNSCEYYQDFHF---WTVGD-GITLIVCTSIFVSLITIIPDTSWYGIIWTTRPNQ 131

Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
           +         + IG  L T +  P E+   ILL+++IGAIV
Sbjct: 132 IIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIV 172


>gi|297790824|ref|XP_002863297.1| NADH dehydrogenase ND6 [Arabidopsis lyrata subsp. lyrata]
 gi|297309131|gb|EFH39556.1| NADH dehydrogenase ND6 [Arabidopsis lyrata subsp. lyrata]
          Length = 176

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 8/142 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----ELSRLVFKG--NNVENIGKVLY 139
                        +    L +  S  +  S  G     +L++++ +   +N + IG  L 
Sbjct: 90  FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAI 161
           T +  P E+   ILL+++IGAI
Sbjct: 150 TDFFLPFELISIILLVALIGAI 171


>gi|290489872|gb|ADD31343.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Gunnera
           manicata]
          Length = 176

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 26/152 (17%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  + L++   + FVA   L++YVGA+ V  +F +M ++     +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLLYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMN----GSE 85

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
             K   F   + +G     L VC S F+  S    +S   + G                +
Sbjct: 86  YYKDFHF---WTVGDGVTSL-VCTSIFV--SLITTISDTSWYGIIWTTRSNQIIEQDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           N++ IG  L T +  P E+   ILL+++IGAI
Sbjct: 140 NIQQIGIHLLTDFFLPFELISIILLVALIGAI 171


>gi|139389472|ref|YP_001123168.1| NADH dehydrogenase subunit 6 [Olimarabidopsis pumila]
 gi|221272339|sp|A4QJY5|NU6C_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286366|dbj|BAF49993.1| NADH dehydrogenase ND6 [Olimarabidopsis pumila]
          Length = 176

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----ELSRLVFKG--NNVENIGKVLY 139
                        +    L +  S  +  S  G      L++++ +   +N + IG  L 
Sbjct: 90  FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAI 161
           T +  P E+   ILL+++IGAI
Sbjct: 150 TDFFLPFELISIILLVALIGAI 171


>gi|308746028|ref|YP_003934612.1| NADH-plastoquinone oxidoreductase subunit 6 [Cheilanthes
           lindheimeri]
 gi|302375461|gb|ADL29835.1| NADH-plastoquinone oxidoreductase subunit 6 [Cheilanthes
           lindheimeri]
          Length = 197

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++ S   V+  N   S FS    F   + L+ +  A+FVA    +VYVGAV V  +F +M
Sbjct: 20  LLGSLGAVSFVNTANSAFSPGSVFTCISLLYFVSNADFVAAAQSLVYVGAVNVLTVFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNF----MVFSAEGELSRLVFKGNN 130
           + D            G+L  S    IL + L     N     + F+ +  +      GNN
Sbjct: 80  ITDEPTGSNVAASGVGYLSASGACAILFSALAYVIHNTKWFDLSFTNQSGIIMSGIPGNN 139

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE-SNP-DNS 187
           V+ +G  L  ++  P E++  +LL++++GAI       RD       K+   S+P DNS
Sbjct: 140 VQQLGYKLLGEFVVPFELASILLLVALVGAI----NPARDEDALTTGKKSSASSPRDNS 194


>gi|298373154|ref|ZP_06983144.1| NADH dehydrogenase I, J subunit [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298276058|gb|EFI17609.1| NADH dehydrogenase I, J subunit [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 172

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 16/170 (9%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           +I S + +T ++ + S   L+   +  AG +L L   F+A + + VY G V+V F+F I 
Sbjct: 6   LIMSVMAITTKSLLRSATYLLLTLICTAGFYLFLNYHFLAAVQVSVYAGGVVVLFVFAIF 65

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIG----------ILAAELIVCASNFMVFSAEGELSRLV 125
           +     EV    + R ++    I           IL  + I  A+  M   A+  ++ + 
Sbjct: 66  LTTKKDEVLVKHEYRRYVYGALIALVGIGLVAYTILKTKFIYAANPSMEGDAQLSMADI- 124

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             G  +   GK    Q+  P E+   +LL +++G I++  + ++  ++++
Sbjct: 125 --GTALMGTGKY---QFLLPFEMLSLLLLAAIVGGILIARKDKKHGEKEE 169


>gi|167044393|gb|ABZ09070.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [uncultured marine crenarchaeote HF4000_APKG6D3]
          Length = 177

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 16/180 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F   + + I+S+   + +R+ IY   +L+      AG F+LL + FVA+  + VY
Sbjct: 7   MVDALFLGIAVLTIVSAIAALEMRSLIYGGLALMGTLGGIAGFFILLDSPFVALFQIAVY 66

Query: 63  VGAVIVFFLFIIMMLDIDI---EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VG++ V  LF+IM++  ++   +  +P+++   +    I      L++C    +  S   
Sbjct: 67  VGSIAVLILFVIMLVKSELIFQKKEDPKRRYAGIALMLI------LMICLGAVIFNSG-- 118

Query: 120 ELSRLVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQD 175
            LS +  +   V+   IG+     Y   L     +L  S+ GA++L  R     D +R D
Sbjct: 119 -LSSITTEEPPVDYKEIGEDFLIYYWPALIAMALVLSGSITGALILARRQDAVEDEQRTD 177


>gi|116747654|ref|YP_844341.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Syntrophobacter fumaroxidans MPOB]
 gi|116696718|gb|ABK15906.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Syntrophobacter fumaroxidans MPOB]
          Length = 175

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM---LDIDIE 82
           RN +++V  LI A     GL+L LG+ F+ ++ L++YVGA+ V  +F IM+   L +++ 
Sbjct: 33  RNILHNVLGLILALSGIGGLYLSLGSFFMGLMQLLIYVGAICVAIVFAIMLSRPLHLEVP 92

Query: 83  VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142
             E  K    + +  + ++A   +V  +N++     G          +VE IG +L T+Y
Sbjct: 93  KREAPKVAMAVATSVVFLVAMVGVVLRTNWVPAVERG-------TDWSVEAIGDLLLTRY 145

Query: 143 AYPLEI 148
           A   E+
Sbjct: 146 ALVFEV 151


>gi|326200332|gb|ADZ52371.1| NADH dehydrogenase subunit 6 [Asclepias syriaca]
          Length = 176

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N IYS FSL    V  +  ++LL + FVA   L++YVGAV V  LF +M +  D E    
Sbjct: 31  NSIYSAFSLGLVLVCISLFYILLSSYFVAAAQLLIYVGAVNVLILFAVMFMS-DSE---- 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGEL----SRLVFKGN---NVE 132
             K   L +   G+    L+VC S F+         S  G +    S  V + +   N +
Sbjct: 86  YYKDSRLWTVGDGV---TLVVCTSLFISLITTIPDTSWYGIIWTTRSNQVLEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFLPFELISLILLVALIGAI 171


>gi|150004308|ref|YP_001299052.1| NADH dehydrogenase I, chain J [Bacteroides vulgatus ATCC 8482]
 gi|237709344|ref|ZP_04539825.1| NADH dehydrogenase I [Bacteroides sp. 9_1_42FAA]
 gi|237724578|ref|ZP_04555059.1| NADH dehydrogenase subunit I [Bacteroides sp. D4]
 gi|254883417|ref|ZP_05256127.1| NADH dehydrogenase subunit I [Bacteroides sp. 4_3_47FAA]
 gi|265755020|ref|ZP_06089934.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_33FAA]
 gi|294776881|ref|ZP_06742344.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           vulgatus PC510]
 gi|319644243|ref|ZP_07998756.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_40A]
 gi|149932732|gb|ABR39430.1| NADH dehydrogenase I, chain J [Bacteroides vulgatus ATCC 8482]
 gi|229437137|gb|EEO47214.1| NADH dehydrogenase subunit I [Bacteroides dorei 5_1_36/D4]
 gi|229456729|gb|EEO62450.1| NADH dehydrogenase I [Bacteroides sp. 9_1_42FAA]
 gi|254836210|gb|EET16519.1| NADH dehydrogenase subunit I [Bacteroides sp. 4_3_47FAA]
 gi|263234631|gb|EEZ20210.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_33FAA]
 gi|294449357|gb|EFG17894.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           vulgatus PC510]
 gi|317384234|gb|EFV65206.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_40A]
          Length = 167

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 9/172 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q + F + +    + S L VT    + +   L+F     AG++  L   F+  + L+
Sbjct: 1   MTLQLIVFIVLALFIAVCSVLAVTTSRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y G + V ++F I++     + AE R K G + +  I  +A  L +C   F++   E  
Sbjct: 61  IYAGGITVLYVFSILLTSSQGDKAE-RLKNGKMVAGAISTIAG-LAICL--FVMLKNEFL 116

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168
            S  V    +V  IG  L      QY  P E+   +LL  ++G I L+ R R
Sbjct: 117 PSHFVHGELDVRTIGHALMGMEKYQYILPFEVISVLLLACIVGGI-LIARKR 167


>gi|256593070|gb|ACV03490.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. SCF-2009]
          Length = 53

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAM 56
          M SLF  +FS   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +
Sbjct: 1  MNSLFM-IFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGL 53


>gi|292559559|ref|YP_003540986.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera]
 gi|290790967|gb|ADD63222.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera]
 gi|294620632|gb|ADF28201.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera]
          Length = 176

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIFSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
                 +  +   G+ +   +VC S  ++FS    +    + G                +
Sbjct: 85  EYSNDSYFWTIGDGVTS---LVCTS--ILFSLITIIPDTSWYGIFWTTRSSQIIEQDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           N++ IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 140 NIQQIGIHLSTDFYLPFELISIILLVSLIGAITM 173


>gi|159161214|ref|YP_001542500.1| NADH-plastoquinone oxidoreductase subunit 6 [Ceratophyllum
           demersum]
 gi|221272315|sp|A8SEF8|NU6C_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|148508497|gb|ABQ81504.1| NADH-plastoquinone oxidoreductase subunit 6 [Ceratophyllum
           demersum]
 gi|227481172|emb|CAP62551.1| NADH dehydrogenase ND6 subunit [Ceratophyllum demersum]
          Length = 176

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
             PIYS FSL   FV  +  ++   + FVA   L++YVGAV V  +F +M ++       
Sbjct: 30  TTPIYSAFSLGLVFVCISLFYIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
              K   L +   GI +   +VC S  ++FS    +    + G                +
Sbjct: 85  EYYKDFHLWTVGDGITS---LVCTS--ILFSLITTILETSWYGIIWTTRSNQIIEQDLTS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           NV+ +G  L T +  P E++  ILL+++IGAI +
Sbjct: 140 NVQQMGIHLSTDFYLPFELTSIILLVALIGAIAM 173


>gi|46200213|ref|YP_005880.1| NADH-quinone oxidoreductase chain J [Thermus thermophilus HB27]
 gi|46197841|gb|AAS82253.1| NADH-quinone oxidoreductase chain J [Thermus thermophilus HB27]
          Length = 179

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 37/52 (71%)

Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          RN I++  +LI  F+  AG+++ L A F+  I ++VY GA++V FLF+IM+L
Sbjct: 23 RNAIHAALALILNFLVLAGVYVALDARFLGFIQVIVYAGAIVVLFLFVIMLL 74


>gi|313679594|ref|YP_004057333.1| NADH dehydrogenase subunit j [Oceanithermus profundus DSM 14977]
 gi|313152309|gb|ADR36160.1| NADH dehydrogenase subunit J [Oceanithermus profundus DSM 14977]
          Length = 185

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          I S+   VT++N +++  +L+  F+  A ++  L A+F+  I ++VY GAV+V FLF+IM
Sbjct: 13 IASALAAVTLKNAVHAGLALVGNFLVLATVYFALEAQFLGWIQIIVYAGAVMVLFLFVIM 72

Query: 76 ML-DIDIEVAEPR 87
          +L D   +V   R
Sbjct: 73 LLFDAKADVGAGR 85


>gi|115604988|ref|YP_784440.1| NADH-plastoquinone oxidoreductase subunit 6 [Drimys granadensis]
 gi|122164393|sp|Q06GU3|NU6C_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|112032716|gb|ABH88351.1| NADH-plastoquinone oxidoreductase subunit 6 [Drimys granadensis]
          Length = 176

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  +   +L  + FVA   L++YVGAV V  +F +M ++       
Sbjct: 30  TNPIFSAFSLGLVLVCISLFHILSNSYFVAAAQLLIYVGAVNVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
                 +L +   G+ +   +VC S  ++FS    +S   + G                +
Sbjct: 85  EYYNDFYLWTVGDGVTS---LVCTS--ILFSLITTISDTSWYGIIWTTGSNQIIEQDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           NV+ IG  L T +  P E+   ILL+++IGAI +
Sbjct: 140 NVQQIGIHLSTDFYLPFELISIILLVALIGAIAM 173


>gi|311741751|ref|ZP_07715562.1| NADH-quinone oxidoreductase subunit J [Aeromicrobium marinum DSM
           15272]
 gi|311314757|gb|EFQ84663.1| NADH-quinone oxidoreductase subunit J [Aeromicrobium marinum DSM
           15272]
          Length = 255

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ + + ++++  +V  R  +++   L    ++ A L+ + GA F+  + ++VY GA++
Sbjct: 4   FWILAPIMVLAALGLVFSRKAVHAALWLAVVMISLAVLYAVQGAPFLFAVQIIVYTGAIM 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           + FLF++M++ ++ +++     +G   G+  +G+L   L+V     +       L     
Sbjct: 64  MLFLFVVMLVGVESDLSLTETIKGQRAGAIVVGLLFGVLLVIGVGQVSVGPVTGLDEANA 123

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            G NV  +  +++  +    + +  +L+ +++GA+VL  R R
Sbjct: 124 NG-NVYGLAALMFGPFVLAFQFTAALLVTAVLGAMVLAHRER 164


>gi|139390208|ref|YP_001123780.1| NADH dehydrogenase subunit 6 [Lobularia maritima]
 gi|221272330|sp|A4QLQ0|NU6C_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286985|dbj|BAF50605.1| NADH dehydrogenase ND6 [Lobularia maritima]
          Length = 176

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCA-------SNFMVFSAEG-----ELSRLVFKG--NNVE 132
                 L +   GI +   +VC        S  +  S  G      L++L+ +   +N +
Sbjct: 90  FN----LWTVGDGITS---LVCTTILFSLISTILDTSWYGVIWTTRLNQLLEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL++++GAI
Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALVGAI 171


>gi|139390005|ref|YP_001123604.1| NADH dehydrogenase ND6 [Draba nemorosa]
 gi|221272322|sp|A4QL74|NU6C_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286807|dbj|BAF50429.1| NADH dehydrogenase ND6 [Draba nemorosa]
          Length = 176

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 26/151 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  +  ++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFS-----AEGELSRLVFKG-----------NN 130
                 L +   GI +   +VC +  ++FS      +    R+++             +N
Sbjct: 90  FT----LWTVGDGITS---LVCTT--LLFSLISTILDTSWYRVIWTTRLNQILEQDLISN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL+++IGAI
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|323149135|ref|YP_004222699.1| NADH-plastoquinone oxidoreductase subunit 6 [Anthriscus cerefolium]
 gi|289645628|gb|ADD13691.1| NADH-plastoquinone oxidoreductase subunit 6 [Anthriscus cerefolium]
          Length = 176

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132
             K   L +   G+ +   +VC S F+ + +   + S        K N         N +
Sbjct: 86  YYKNFHLWTVGDGVTS---MVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|289582896|ref|YP_003481362.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Natrialba
          magadii ATCC 43099]
 gi|289532449|gb|ADD06800.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Natrialba
          magadii ATCC 43099]
          Length = 96

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F LF+F+ + S   VV + +P +S   L  A ++ A  F++  AEFVAM+ ++VYVG V+
Sbjct: 8  FTLFAFITLASGLGVVLLEDPWHSALMLGVALMSIAVHFVMQAAEFVAMMQVLVYVGGVL 67

Query: 68 VFFLFIIMM 76
          +   F +M+
Sbjct: 68 ILITFAVML 76


>gi|319901161|ref|YP_004160889.1| NADH dehydrogenase subunit J [Bacteroides helcogenes P 36-108]
 gi|319416192|gb|ADV43303.1| NADH dehydrogenase subunit J [Bacteroides helcogenes P 36-108]
          Length = 170

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +    + S L VT    + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   ITLETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQVM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   + +VA   K+  FL         A +++  +    F A  +
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDVAAKLKRSKFLAGLGATAGGAVIVLFITLNHKFIATTD 122

Query: 121 LSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168
           +  L     N+  IG  + +  +Y Y  P E    +LL  ++G I L+ R R
Sbjct: 123 VQPLEV---NIRTIGHHMLSGEKYGYLLPFEAVSILLLACIVGGI-LIARKR 170


>gi|313183874|ref|YP_004021717.1| NADH-plastoquinone oxidoreductase subunit 6 [Prunus persica]
 gi|309321486|gb|ADO65027.1| NADH-plastoquinone oxidoreductase subunit 6 [Prunus persica]
          Length = 176

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 22/154 (14%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV   NPIYS FSL    V  +  ++LL + FVA   L++YVGA+ V  +F +M ++   
Sbjct: 26  VVLFTNPIYSAFSLGLVLVCISLFYILLNSYFVAAAQLLIYVGAINVLIVFAVMFMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---------- 128
             +E  K    L  + +G     L VC S F   M+   +     +++            
Sbjct: 83  -GSEYYKD---LNLWTVGD-GVTLPVCTSIFVLLMITITDTSWYGIIWTTRSNQIIEQDL 137

Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            +N + IG  L T +  P E    ILL ++IGAI
Sbjct: 138 ISNSQQIGIHLSTDFFLPFEFVSIILLAALIGAI 171


>gi|225544175|ref|YP_002720165.1| ndhG [Jatropha curcas]
 gi|224979616|gb|ACN72743.1| ndhG [Jatropha curcas]
          Length = 176

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPIYS FSL F  V  +  ++L  + FVA   L++YVGA+ V  LF +M +       D
Sbjct: 30  TNPIYSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136
            ++             S FI ++    I+  +++         ++++ +   +N + IG 
Sbjct: 90  FNLWTVGNGVTSLVCTSIFISLIT---IISDTSWYGIIWTTRTNQIIEQDLISNGQQIGI 146

Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161
            L T +  P +    ILL+++IGAI
Sbjct: 147 HLSTDFFLPFDFISVILLVALIGAI 171


>gi|197131410|gb|ACH47223.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium carolinianum]
          Length = 176

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 22/150 (14%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            N IYS FSL   F+  +  ++L  + FVA   L++YVGA+ +  +F +M ++       
Sbjct: 30  TNLIYSAFSLGLVFICISLFYILANSHFVAAAQLLIYVGAINILIIFAVMFIN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCA-------SNFMVFSAEG-----ELSRLVFKG--NNV 131
              K   LG+   G   A  +VC        SN +  S  G       +++V K   +N 
Sbjct: 85  EYSKDLNLGTVGDG---ATSLVCTTLFLSLISNILDTSWYGIIWTTRATQIVEKDLISNS 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           + IG  L T +  P E+   ILL+++IGAI
Sbjct: 142 QQIGIRLSTDFFLPFELISIILLVALIGAI 171


>gi|27904654|ref|NP_777780.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372471|sp|Q89AT8|NUOJ_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|27904051|gb|AAO26885.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 164

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 6/167 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFY  S   I+ +   +  RN +YS+  LI +FV  + +F  LGA F A + +++Y GA+
Sbjct: 4   FFYSSSLATIVFTVCSIFSRNLMYSLLYLILSFVFTSCVFFSLGATFAAALEVIIYAGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F+F IMM +         K       ++I  L    I+    F + S   +  ++ +
Sbjct: 64  MVLFVFFIMMFNFKKSTLYAEKIFDKNNYYYINFLFLLCILIFPFFFILSYLYK-EKIFY 122

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              + + +   L++ Y   +E+S  +LL ++I     ++ H   I+R
Sbjct: 123 MVVSTKLVAIKLFSDYILVIELSSIVLLSALI-----IVSHIGKIRR 164


>gi|57505807|ref|ZP_00371732.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
           [Campylobacter upsaliensis RM3195]
 gi|57015837|gb|EAL52626.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
           [Campylobacter upsaliensis RM3195]
          Length = 172

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 13  FMAIISSFLVVTV--RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           F  +I SF +V V  +N +YS+ +L    V  +  + +L AEF+  I ++VY GAV+  +
Sbjct: 10  FSVLILSFFLVAVLSKNMLYSLSALAGGMVFLSSFYFMLDAEFLGAIQIIVYSGAVLGIY 69

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
            F +M  D   +  E  K   F  SFF  ++   L+   ++ M F        L F    
Sbjct: 70  SFAMMFFDASKDFKERLK---FKKSFF-ALIGLSLVGLFASLMSFKLNSVNVDLPFIDTA 125

Query: 131 VENIGKVL----YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           + ++ K L    +++Y    E    +LL++++ AIV  L H+  IK + 
Sbjct: 126 LFDLNKQLAFAIFSKYLLAFEFVAILLLIALVCAIV--LTHKELIKEKQ 172


>gi|295697427|ref|YP_003590665.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
          tusciae DSM 2912]
 gi|295413029|gb|ADG07521.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
          tusciae DSM 2912]
          Length = 172

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 48/76 (63%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M    + F+L + +AI  +FL+   +  ++ V S+  +F++ AGLF +LGAEF+ +  L+
Sbjct: 1  MAQNVITFFLLAGVAIAGAFLMFRSKRIVHMVLSIALSFLSLAGLFAVLGAEFLFVAQLI 60

Query: 61 VYVGAVIVFFLFIIMM 76
          VY GA+ +  +F IM+
Sbjct: 61 VYSGAITILAVFSIML 76


>gi|238898692|ref|YP_002924373.1| NADH dehydrogenase I chain J [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466451|gb|ACQ68225.1| NADH dehydrogenase I chain J [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 188

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 91/171 (53%), Gaps = 8/171 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  + ++++++  V+   N I+S+  LI + +  + +F  LGA     + ++VY GA++
Sbjct: 5   FYTAALVSVLATVRVIFHTNAIHSLLYLIISLLAISVVFFSLGAYLAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSAEGELSRL 124
           V F+F++MML++  +  E +++ G    F++G   + +  L+     F   S E  +   
Sbjct: 65  VLFVFVVMMLNLG-QSEEKQERVGLKPVFWVGPSLLCSLLLLALLKGFHGLSGESMIGTW 123

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           V    + ++IG  L++ Y   +E++  +LL  ++ A  L   +++ ++ + 
Sbjct: 124 V----SAKSIGVHLFSAYILAVELASMLLLAGLVVAFHLGKENKKRLEEKK 170


>gi|297569879|ref|YP_003691223.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925794|gb|ADH86604.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 173

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+ F  + I  + +     N I +V  L    V  AG++  L + F+A++ +++Y GAV 
Sbjct: 15  FFGFILLIIFGALVATNAVNLIRAVCGLALCLVGVAGIYYFLQSPFLALMQVLIYAGAVC 74

Query: 68  VFFLFIIMMLDID----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           V  +F +M+ +      +E A P      L        AA +    +   + ++  E S 
Sbjct: 75  VAIVFAVMLAEPQGAKRLERAHP------LAGPGAFAAAALMAWGLAALALRTSWPEASS 128

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            V  G  +E++G+ + T +    E+   ILL+++IG++VL  R RR
Sbjct: 129 QVNAG-ALEDVGRAMMTTFVVSFELISLILLVAIIGSLVLARRGRR 173


>gi|290489842|gb|ADD31328.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Antirrhinum
           majus]
          Length = 178

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 28/164 (17%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV   NPIYS FSL       +  ++L  + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVLFPNPIYSAFSLGLVLFCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVM 79

Query: 76  MLD----IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVF-- 126
            ++     D E  +P      + S          IVC S F   +    +     +V+  
Sbjct: 80  FMNGSEYYDYEDFQPWTVGDGVTS----------IVCTSLFISLLTTIPDTSWYGIVWTT 129

Query: 127 KGN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           K N         N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 130 KSNQILEQDLISNSQQIGIHLATDFFLPFELISIILLVALIGAI 173


>gi|12895|emb|CAA31402.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
          Length = 137

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 19/129 (14%)

Query: 39  FVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK-KRGF--LGS 95
           F+N++ + ++LG EF+A++ L+VYVGA+ V FLF+IM+L+I     E R   RG+  LG 
Sbjct: 10  FINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIP--ATELRAYSRGWSTLGI 67

Query: 96  FFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKVLYTQYAYPLEISGF 151
           F        + +    F +  + G   R +  G     ++ N+G  LY  +A  L ++  
Sbjct: 68  F--------VFIINGVFQITPSMGP--RGIITGLPGAESITNLGHALYLYFADLLILNSL 117

Query: 152 ILLLSMIGA 160
           +L +++ G 
Sbjct: 118 VLTVALFGC 126


>gi|323148880|ref|YP_004221972.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium carvifolium]
 gi|316926344|gb|ADU58197.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium carvifolium]
          Length = 179

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 22/150 (14%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            N IYS FSL   F+  +  ++L    FVA   L++YVGA+ +  LF +M ++       
Sbjct: 30  TNLIYSAFSLGLVFICISLFYILANCHFVAAAQLLIYVGAINILILFAVMFIN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCA-------SNFMVFSAEG-----ELSRLVFKG--NNV 131
              K    G+   G   A  +VC        SN +  S  G     + ++++ K   +N 
Sbjct: 85  EYSKDFHFGTVGDG---ATSLVCTTLFLSLISNILNTSWYGVIWTTKAAQIIEKDLISNS 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           + IG  L T +  P E+   ILL+++IGAI
Sbjct: 142 QQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|290489852|gb|ADD31333.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Lonicera
           japonica]
          Length = 176

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 22/154 (14%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M +    
Sbjct: 26  VVLLPNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMK--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGEL-----SRLVFKG- 128
                  K   L +   G+ A   +VC S F+         S  G L     S+++ +  
Sbjct: 83  --GSEYYKDFHLLAVGDGLTA---MVCTSLFVSLITTIPDTSWYGILWTTKSSQIIEQDL 137

Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            +N + IG  L T +  P E+   ILL+S+IGAI
Sbjct: 138 ISNSQQIGIHLSTDFFLPFELISIILLVSLIGAI 171


>gi|11466018|ref|NP_054560.1| NADH dehydrogenase subunit 6 [Nicotiana tabacum]
 gi|78102601|ref|YP_358740.1| NADH dehydrogenase subunit 6 [Nicotiana sylvestris]
 gi|81301631|ref|YP_398926.1| NADH dehydrogenase subunit 6 [Nicotiana tomentosiformis]
 gi|14194987|sp|Q32722|NU6C_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|122212870|sp|Q33BW9|NU6C_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|122213586|sp|Q3C1Q1|NU6C_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|2924281|emb|CAA77434.1| NADH dehydrogenase ND6 subunit [Nicotiana tabacum]
 gi|77799628|dbj|BAE46717.1| NADH dehydrogenase ND6 subunit [Nicotiana sylvestris]
 gi|80750990|dbj|BAE48066.1| NADH dehydrogenase ND6 subunit [Nicotiana tomentosiformis]
          Length = 176

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130
             K   L +   GI +   +VC S F+  S    +S   + G                +N
Sbjct: 86  YYKDFHLWTVGDGITS---MVCISLFI--SLITTISDTSWYGIIWTTRSNQIIEQDFISN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL+++IGAI
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|157415786|ref|YP_001483042.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386750|gb|ABV53065.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748425|gb|ADN91695.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
           [Campylobacter jejuni subsp. jejuni M1]
 gi|315931250|gb|EFV10220.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 172

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 11/158 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  + F IM  D  
Sbjct: 20  IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAIMFFDAS 79

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136
            E  E  K +    SFF  ++ + +++ A      +   S +  L+       N + +  
Sbjct: 80  KEFKEQLKAK---KSFFTLVVLSAILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            ++++Y    E    +LL++++ AIVL    R+++ ++
Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIVL---TRKELTKE 170


>gi|39937316|ref|NP_949592.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Rhodopseudomonas palustris CGA009]
 gi|39651174|emb|CAE29697.1| NADH-ubiquinone dehydrogenase chain J [Rhodopseudomonas palustris
           CGA009]
          Length = 168

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 16/179 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SL        A+IS+ + VT  N ++++  L+   +  A  F  LGA F A++ +++Y
Sbjct: 1   MSSLLAIYAGAFALISAAVSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLIMIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGE 120
            GA++V F+F++M L I  E    R++     ++ + +L + LIV    F  +   A G+
Sbjct: 61  AGAIVVLFVFVVMTLPISPESIT-RERALLRRAWPLPVLMSVLIVAPFVFGEIGLKATGQ 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            + +     + + +GK+L+  +A  +E++  +L+  +IG         R I R D S +
Sbjct: 120 PAPV-----SAQEVGKLLFGPWALAVELASLLLMAGLIGV--------RHIGRNDRSPR 165


>gi|156584755|gb|ABU85209.1| NADH-plastoquinone oxidoreductase subunit 6 [Anethum graveolens]
          Length = 176

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL       +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLACTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132
             K   L +   G+ +   IVC S F+ + +   + S        K N         N +
Sbjct: 86  YYKDFHLWTVGDGVTS---IVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDFISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|29126634|ref|NP_803496.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL105]
 gi|29029490|gb|AAO64941.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL105]
          Length = 203

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 42/67 (62%)

Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          +S  LV+  R+PI SV  L   ++   G+FLLL   F+ +  ++VYVGA+ + FLF I M
Sbjct: 16 LSGVLVIVSRSPINSVLFLCGLYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILFLFTIFM 75

Query: 77 LDIDIEV 83
          +++ + +
Sbjct: 76 INVRLTL 82


>gi|87306368|ref|ZP_01088515.1| NADH Dehydrogenase I Chain J [Blastopirellula marina DSM 3645]
 gi|87290547|gb|EAQ82434.1| NADH Dehydrogenase I Chain J [Blastopirellula marina DSM 3645]
          Length = 245

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++FFYL SF+A   +  +V   N +   F L+ +    +GL  L GA FV  + L++YV
Sbjct: 15 HTVFFYLTSFIACGFALAMVVSSNVVRMAFFLVLSLAATSGLIFLTGAHFVGAMQLMIYV 74

Query: 64 GAVIVFFLFIIMM 76
          G  +V  +F +M+
Sbjct: 75 GGTVVLLIFGVML 87


>gi|332881560|ref|ZP_08449209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680558|gb|EGJ53506.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 171

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 13/168 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + M  + S L VT    + +  +L+F     AGL+ +LG  ++  + L VY G ++
Sbjct: 11  FGIVALMMAVCSVLAVTSGRILRAATALLFVLFGTAGLYFMLGYTYLGAVQLSVYAGGIV 70

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA----ELIVCASNFMVFSAEG--EL 121
           V ++F I++   D  + E R  RG   +  + +LA       ++ +  F  FS     EL
Sbjct: 71  VLYVFSILLTRSDKNMNE-RIPRGRWFAAILTVLAGFGLTVFLLSSYGFARFSVPPLVEL 129

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              V  GN +  + K    Q+  P E+   +LL  MIGAI  M+  +R
Sbjct: 130 DP-VKVGNALIGMEK---YQFVLPFEVVSVLLLACMIGAI--MIARKR 171


>gi|189162324|ref|YP_001936570.1| NADH dehydrogenase subunit 6 [Fagopyrum esculentum subsp.
           ancestrale]
 gi|221272323|sp|B2XWJ4|NU6C_FAGEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|166065410|gb|ABY79785.1| NADH dehydrogenase subunit 6 [Fagopyrum esculentum subsp.
           ancestrale]
          Length = 176

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 24/151 (15%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  +  +++  ++FVA   L++YVGA+ V  +F +M ++    +  
Sbjct: 30  TNPIFSAFSLGLVLVCISLFYIIANSQFVASAQLLIYVGAINVLIIFAVMFIN---GLEY 86

Query: 86  PRKKRGF-LGSFFIGILAAELIVCASNF-----MVFSAEG-------ELSRLVFKG--NN 130
            +  R F LG          L++C   F      + +  G       +L++++ +   NN
Sbjct: 87  DKNLRLFTLGD------GMTLVICTGIFFLLITTILNTSGYGIIWTTKLNQILEQDLINN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL+++IGAI
Sbjct: 141 SQQIGIHLSTDFFPPFELISIILLVALIGAI 171


>gi|284164398|ref|YP_003402677.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
          [Haloterrigena turkmenica DSM 5511]
 gi|284014053|gb|ADB60004.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
          [Haloterrigena turkmenica DSM 5511]
          Length = 91

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 47/74 (63%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          ++++ F  F+ + ++S+  VV +  P ++   L  A ++ A  F++L AEFVAM+ ++VY
Sbjct: 2  LETIAFAAFALVTLLSALGVVLLEEPWHAALMLGVALMSIAVHFVMLAAEFVAMMQILVY 61

Query: 63 VGAVIVFFLFIIMM 76
          VG V+V   F +M+
Sbjct: 62 VGGVLVLITFAVML 75


>gi|262400770|gb|ACY66259.1| NADH dehydrogenase subunit 6 [Brassica napus]
          Length = 176

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 26/151 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILANSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSID 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130
                 L +   GI +   +VC +  ++FS    +    + G                +N
Sbjct: 90  FN----LWTVGNGITS---VVCTT--ILFSLISTILDTSWYGVIWTTRLNQILEQDLISN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL+++IGAI
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|119368552|ref|YP_913239.1| NADH dehydrogenase ND6 subunit [Gossypium barbadense]
 gi|221272324|sp|A0ZZ88|NU6C_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|119224914|dbj|BAF41300.1| NADH dehydrogenase ND6 subunit [Gossypium barbadense]
          Length = 176

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 14/150 (9%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L    FVA   L++YVGA+ V  LF++M ++     +E 
Sbjct: 31  NPIYSAFSLGLVLVCISLFYILTNYHFVATAKLLIYVGAINVLILFVVMFMN----SSEY 86

Query: 87  RK--KRGFLGSFFIGILAAELIVC-ASNFMVFSAEGEL----SRLVFKGN---NVENIGK 136
            K      +G+    ++   ++V   S  +  S  G +    S  + + +   N + IG 
Sbjct: 87  YKDFNPWTIGNGLTSLVCTSILVSLISTILDTSWYGIIWTTRSNQIIEQDLIGNSQQIGI 146

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            L T +  P E    ILL+++IGAI + L+
Sbjct: 147 HLATDFFLPFEFISIILLVALIGAIDVTLQ 176


>gi|86149418|ref|ZP_01067649.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85840200|gb|EAQ57458.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 172

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  + F +M  D  
Sbjct: 20  IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136
            E  E  K +    SFF  ++ + +++ A      +   S +  L+       N + +  
Sbjct: 80  KEFKEQLKAK---KSFFTLVVLSTILLLAMLIGFKYQNISTDLPLNDPTLFDFN-KQLAL 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            ++++Y    E    +LL++++ AIV  L H+   K + 
Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIV--LTHKELTKEKQ 172


>gi|27262370|gb|AAN87466.1| NADH-quinone oxidoreductase chain J [Heliobacillus mobilis]
 gi|111074964|gb|ABH04826.1| NAD(P)H-quinone oxidoreductase subunit 6 [Heliobacillus mobilis]
          Length = 169

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  + M I+S+  VV +++ ++S   L  +F+  AGL++LL A+F+A + ++VY GAV 
Sbjct: 10 FYGLAGMTILSAAGVVFLKDIVHSALMLALSFIGVAGLYVLLNADFLAAVQILVYGGAVA 69

Query: 68 VFFLFIIMM 76
          +   F +M+
Sbjct: 70 ILIAFGVML 78


>gi|91209042|ref|YP_538903.1| NADH dehydrogenase subunit 6 [Solanum bulbocastanum]
 gi|122201800|sp|Q2MID4|NU6C_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|84371949|gb|ABC56267.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum bulbocastanum]
          Length = 176

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130
             K   L +   GI +   +VC S F+  S    +S   + G                +N
Sbjct: 86  YYKDFHLWTVGNGITS---MVCISLFI--SLITTISDTSWYGIIWTTRSNQIIEQDFLSN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL+++IGAI
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|304312248|ref|YP_003811846.1| NADH dehydrogenase I, subunit J [gamma proteobacterium HdN1]
 gi|301797981|emb|CBL46203.1| NADH dehydrogenase I, subunit J [gamma proteobacterium HdN1]
          Length = 175

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+   FYL S + + S  +VV   N ++S+  LI + +  A +F  +GA F A + ++VY
Sbjct: 1  MEMFTFYLTSIIILTSILMVVISANAVHSLLYLILSSLAMAVIFFQMGAPFAAALEVIVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           GA++V F+F++MML++     E  +    LG
Sbjct: 61 AGAIMVLFVFVVMMLNLGQAAVEEERTLMPLG 92


>gi|240272796|gb|EER36347.1| NADH-ubiquinone oxidoreductase chain 6 [Ajellomyces capsulatus
          H143]
 gi|325087325|gb|EGC40635.1| NADH-ubiquinone oxidoreductase chain 6 [Ajellomyces capsulatus
          H88]
          Length = 202

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
          + I  S   +  +NP+ S+F LI  F++ +     +G EF+ +  L+VYVGAV + F+FI
Sbjct: 23 ICIFFSLYTIISKNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAVSILFIFI 82

Query: 74 IMMLDIDIE 82
          +M+++I I 
Sbjct: 83 LMLINIRIS 91


>gi|306486042|gb|ADM92668.1| NADH-plastoquinone oxidoreductase subunit 6 [Davidia involucrata]
          Length = 176

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M +       D
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
             +             S F+ ++   L       +  +   ++       N+ + IG  L
Sbjct: 90  FHLWTVGDGVTSLVCTSIFVSLITTILDTSWYGIIWTTRSNQIMEQDLISNS-QQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVL 163
            T +  P E+   ILL+++IGAI +
Sbjct: 149 STDFFLPFELISIILLVALIGAIAI 173


>gi|153951541|ref|YP_001398852.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938987|gb|ABS43728.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 172

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           + V  +N +YS+ +L+   V  +G + LL AEF+ +I ++VY GAV+  + F +M  D  
Sbjct: 20  IAVLSKNMLYSLSALVGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136
            E  E  K +    SFF  ++ + +++ A      +   S +  L+       N + +  
Sbjct: 80  KEFKEQLKAK---KSFFTLVVLSAILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            ++++Y    E    +LL++++ AI   L H+   K + 
Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIT--LTHKELTKEKQ 172


>gi|294814433|ref|ZP_06773076.1| Putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC
           27064]
 gi|326442823|ref|ZP_08217557.1| putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC
           27064]
 gi|294327032|gb|EFG08675.1| Putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC
           27064]
          Length = 218

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 25/201 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   +   ++ L VT R  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 23  FLLVGLVTFGAAVLTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 82

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--------EG 119
           V  LF +M+    I     R      G+ ++ +  A     A  ++V  A        +G
Sbjct: 83  VILLFGLMLTRAPIG----RSPDADSGNRWVALAVALTAATALVWVVVDAFRTTWIDLDG 138

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDIS 177
            +        + E  G +L+  +  P E    +LL +++GAIVL  +      R   D  
Sbjct: 139 PVQ------GSTEVTGSILFRHWVLPFEALSVLLLAALVGAIVLSRKQAEADTRAEADTP 192

Query: 178 KQLESNPDNSIVMVKVKSGKG 198
              ++ P N       ++G G
Sbjct: 193 SGNDALPGNG-----PRTGNG 208


>gi|108773182|ref|YP_635692.1| NADH dehydrogenase subunit 6 [Solanum tuberosum]
 gi|122196327|sp|Q27RZ6|NU6C_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|88656857|gb|ABD47110.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum tuberosum]
          Length = 176

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    +  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLICTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130
             K   L +   GI +   +VC S F+  S    +S   + G                +N
Sbjct: 86  YYKDFHLWTVGDGITS---MVCISLFI--SLITTISDTSWYGIIWTTRSNQIIEQDFLSN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL+++IGAI
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|121613130|ref|YP_001001210.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006103|ref|ZP_02271861.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|218563159|ref|YP_002344939.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|87249905|gb|EAQ72864.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|112360866|emb|CAL35667.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315927684|gb|EFV07015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 172

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  + F +M  D  
Sbjct: 20  IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136
            E  E  K +    SFF  ++ + +++ A      +   S +  L+       N + +  
Sbjct: 80  KEFKEQLKAK---KSFFTLVVLSTILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            ++++Y    E    +LL++++ AIV  L H+   K + 
Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIV--LTHKELTKEKQ 172


>gi|225554147|gb|EEH02512.1| NADH dehydrogenase subunit 6 [Ajellomyces capsulatus G186AR]
          Length = 202

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
          + I  S   +  +NP+ S+F LI  F++ +     +G EF+ +  L+VYVGAV + F+FI
Sbjct: 23 ICIFFSLYTIISKNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAVSILFIFI 82

Query: 74 IMMLDIDIE 82
          +M+++I I 
Sbjct: 83 LMLINIRIS 91


>gi|146307443|ref|YP_001187908.1| NADH dehydrogenase subunit J [Pseudomonas mendocina ymp]
 gi|145575644|gb|ABP85176.1| NADH dehydrogenase subunit J [Pseudomonas mendocina ymp]
          Length = 169

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 40/63 (63%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          NP++++  LI + +  + +F  LGA F   + ++VY GA++V F+F++MML++     + 
Sbjct: 24 NPVHALLYLIVSLLAVSMVFFALGAPFAGALEIIVYAGAIMVLFVFVVMMLNLGPAAVDQ 83

Query: 87 RKK 89
           +K
Sbjct: 84 ERK 86


>gi|30315629|ref|NP_847980.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL94]
 gi|30230282|gb|AAO62892.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL94]
          Length = 201

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 38/177 (21%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           LV+  R+PI SV  L   ++   G+FLLL   F+ +  ++VYVGA+ + FLF I M+++ 
Sbjct: 20  LVIVSRSPINSVLFLCGMYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILFLFTIFMINVR 79

Query: 81  IEV-----AEPRKKRGFLGSF-FIGILAAEL------------------IVCASNFMVFS 116
           + +     A P      L  F F  I  A+L                  IV     +V S
Sbjct: 80  LTLQLGSFASPLAAILLLAGFAFYFIFFADLSFSQDLPVLSSLFGSSQTIVNNDTTLVTS 139

Query: 117 AEGE----------LSRLVFKGNNVENIGKVLYTQYAYPLE--ISGFILLLSMIGAI 161
              E           S L+ + +++  +  +++  YAYPL   + GF+LL+ M+  I
Sbjct: 140 GNWESNFRSIYASDWSHLLGRPSDLTMLANMIF--YAYPLALILVGFLLLVVMVAII 194


>gi|189459780|ref|ZP_03008565.1| hypothetical protein BACCOP_00409 [Bacteroides coprocola DSM 17136]
 gi|189433509|gb|EDV02494.1| hypothetical protein BACCOP_00409 [Bacteroides coprocola DSM 17136]
          Length = 171

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 13/175 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +Q + FY+ +    + S L VT    + +   L+F       ++ +LG  F+  + L+
Sbjct: 3   ITLQEIVFYVVAAAIAVFSVLAVTTGKILRAATYLLFVLFGTGAIYGVLGYTFLGAVQLM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   D  +  P  +   +      ++ A L++    F++F+  G 
Sbjct: 63  VYAGGIVVLYVFSILLTQSDKNMKYPINRGKLISVLLTTLIGAALVL----FLIFT-NGF 117

Query: 121 LSRLVFKGNNVEN-------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              ++ +G  +         IG   Y Q+  P E+   +LL  MIGAI++  + +
Sbjct: 118 ALNIIPQGVELPAREIGLALIGTEKY-QFVLPFEVVSILLLACMIGAILIARKQK 171


>gi|290489884|gb|ADD31349.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Staphylea
           colchica]
          Length = 178

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++   + FVA   L++YVGA+ +  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLIYVGAINILIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVFKG-----------NNV 131
              K   L +  IG     L VC S F+       +     +++             NN 
Sbjct: 85  EYYKDFNLWTVGIGDGVTSL-VCTSIFVSLITIILDTSWYGIIWTTRSNQIIEQDLINNS 143

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           + IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 144 QQIGIHLSTDFFLPFELISIILLVSLIGAIAM 175


>gi|290489878|gb|ADD31346.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Oxalis
           latifolia]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 22/150 (14%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            N IYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++     + 
Sbjct: 30  NNTIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----SS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGEL----SRLVFKGNNVEN- 133
              K   L +   GI    L+VC S F++        S  G +    S  + + N ++N 
Sbjct: 85  EYSKDFNLWTVGNGI---TLLVCISIFVLLITTIPDISWYGIIWTTRSNQIIEQNWIDNS 141

Query: 134 --IGKVLYTQYAYPLEISGFILLLSMIGAI 161
             IG  L T +  P E+   ILL+++IGAI
Sbjct: 142 QQIGIHLLTDFFLPFELISIILLVALIGAI 171


>gi|298674251|ref|YP_003726001.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Methanohalobium evestigatum Z-7303]
 gi|298287239|gb|ADI73205.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Methanohalobium evestigatum Z-7303]
          Length = 105

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 45/69 (65%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L S + I+ S L +  R+ + +  SLI +  + AGL++LL A+F+ ++ ++VYVGAV 
Sbjct: 25 FALLSLIIILFSLLTIVSRDVVRAAISLIVSLFSVAGLYILLNAQFLGVVQVLVYVGAVG 84

Query: 68 VFFLFIIMM 76
          V  LF +M+
Sbjct: 85 VLILFGVML 93


>gi|118576849|ref|YP_876592.1| NADH-ubiquinone oxidoreductase, subunit J [Cenarchaeum symbiosum A]
 gi|118195370|gb|ABK78288.1| NADH-ubiquinone oxidoreductase, subunit J [Cenarchaeum symbiosum A]
          Length = 159

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 23/176 (13%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           M I S+   + +R+ IYS  +L+      AG F LL + FVA+  + VYVG++ V  LF 
Sbjct: 1   MTIGSAIAALEMRSLIYSSIALMGTLGGIAGFFFLLDSPFVALFQIAVYVGSIAVLILFT 60

Query: 74  IMMLDIDI---EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN- 129
           +M++  ++   +V + R++   +G   + + A   I   S            R V +G  
Sbjct: 61  VMLVKRELIFTKVEDRRRRLAGVGLMLVFMTAVGGIFLDSGI----------RAVTEGGG 110

Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
             +   +G    T Y   L +   IL  S+ G++VL        +R+D+  +  ++
Sbjct: 111 PVDFTEVGADFLTYYWPALILMALILAGSVTGSLVLA-------RREDVEDEQRAS 159


>gi|167042387|gb|ABZ07114.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [uncultured marine crenarchaeote HF4000_ANIW97P9]
          Length = 171

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 15/178 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            SLF  + + + I+S+   + +R+ IY   +L+      AG F+LL + FVA+  + VYV
Sbjct: 3   DSLFLGI-AVLTIVSAIAALEMRSLIYGGIALMGTLGGIAGFFILLDSPFVALFQIAVYV 61

Query: 64  GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           G++ V  LF IM++  ++  +  E  K+R      + GI    +++ +   ++F++   L
Sbjct: 62  GSIAVLILFTIMLVKNELIFQKKEDPKRR------YAGIALMLILMISLGAVIFNS--GL 113

Query: 122 SRLVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQD 175
           S +  +   V+   IG+     Y   L     +L  S+ GA++L  R     D +R D
Sbjct: 114 SSITTEEPPVDYKEIGEDFLIYYWPALIAMALVLAGSITGAMILARRQDGVEDEQRTD 171


>gi|115605073|ref|YP_784525.1| NADH-plastoquinone oxidoreductase subunit 6 [Piper cenocladum]
 gi|122164316|sp|Q06GK8|NU6C_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|112253802|gb|ABI14523.1| NADH-plastoquinone oxidoreductase subunit 6 [Piper cenocladum]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++ S  V+ + N IYS FSL F  V  +  ++L  + FVA   L++YVGA+ V  +F +M
Sbjct: 20  VLGSLGVILLTNTIYSAFSLGFVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVM 79

Query: 76  ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            +       D  I             S F  ++   L       +  +   ++       
Sbjct: 80  FMKGSEYSNDFSIWTVGDGVTSLVCTSIFFSLITTILDTSWYGIIWTTRSNQIMEQDLL- 138

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           +NV+ IG  L T +  P E+   +LL+++IGAI +
Sbjct: 139 SNVQQIGIHLVTDFILPFELISIVLLVALIGAIAM 173


>gi|325126918|ref|YP_004286155.1| NADH-plastoquinone oxidoreductase subunit 6 [Fragaria vesca subsp.
           vesca]
 gi|324022830|gb|ADY15404.1| NADH-plastoquinone oxidoreductase subunit 6 [Fragaria vesca subsp.
           vesca]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 22/154 (14%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV   NPIYS FSL    V  +  ++LL + FVA    ++YVGA+ V  +F +M ++   
Sbjct: 26  VVLFTNPIYSAFSLGLVLVCISLFYILLNSYFVAAAQFLIYVGAINVLIVFAVMFMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---------- 128
                  +   L +   GI    L VC S F   M+   +     +++            
Sbjct: 83  --GSEYYQDFNLWTVGAGI---TLPVCTSIFVLLMITITDTSWYGIIWTTRSNQIIEQDL 137

Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            +N + IG  L T +  P E    ILL+++IGAI
Sbjct: 138 ISNSQQIGIHLSTDFFLPFEFISIILLVALIGAI 171


>gi|86152311|ref|ZP_01070522.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88596684|ref|ZP_01099921.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|315124981|ref|YP_004066985.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840800|gb|EAQ58051.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88191525|gb|EAQ95497.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|284926765|gb|ADC29117.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315018703|gb|ADT66796.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315930445|gb|EFV09509.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 172

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  + F +M  D  
Sbjct: 20  IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136
            E  E  K +    SFF  ++ + +++ A      +   S +  L+       N + +  
Sbjct: 80  KEFKEQLKAK---KSFFTLVVLSAILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            ++++Y    E    +LL++++ AIV  L H+   K + 
Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIV--LTHKELTKEKQ 172


>gi|192293096|ref|YP_001993701.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodopseudomonas palustris TIE-1]
 gi|192286845|gb|ACF03226.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodopseudomonas palustris TIE-1]
          Length = 168

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 16/179 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SL        A+IS+ + VT  N ++++  L+   +  A  F  LGA F A++ +++Y
Sbjct: 1   MSSLLAIYAGAFALISAAVSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLIMIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SAEGE 120
            GA++V F+F++M L I  E    R++     ++ + +L + LIV    F  F   A G+
Sbjct: 61  AGAIVVLFVFVVMTLPISPESIT-RERALLRRAWPLPVLMSVLIVAPFVFGEFGLKAIGQ 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            + +     + + +GK+L+  +A  +E++  +L+  +IG         R I R D S +
Sbjct: 120 PAPV-----SAQEVGKLLFGPWALAVELASLLLMAGLIGV--------RHIGRNDRSPR 165


>gi|89073309|ref|ZP_01159839.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Photobacterium sp. SKA34]
 gi|89051019|gb|EAR56483.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Photobacterium sp. SKA34]
          Length = 177

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 87/182 (47%), Gaps = 7/182 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++ FY  S + ++++  ++ V+ P++    L  + +  A +F LLGA F+A + ++
Sbjct: 1   MLTWNIIFYASSAIMLLAAISLLFVKEPMHGAVYLTTSLLALAVIFYLLGAPFIAALQII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGA++V F+F IM+            +   L    + ++  E  +  ++   F A   
Sbjct: 61  LYVGAIMVLFVFFIMLSPASRTFPLTANRTVILPVILLTVMLVEAFIVLNHGHQFYAIET 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           +  +  K      +G  L+  Y   +E    +LL +++   V+ L  +  ++  +  K++
Sbjct: 121 IKTISPKA-----VGADLFNHYKLAIEALSTLLLGALVA--VIYLAAQMKVRHSETDKKV 173

Query: 181 ES 182
           E 
Sbjct: 174 ED 175


>gi|239980100|ref|ZP_04702624.1| putative NADH dehydrogenase chain J [Streptomyces albus J1074]
 gi|291451954|ref|ZP_06591344.1| predicted protein [Streptomyces albus J1074]
 gi|291354903|gb|EFE81805.1| predicted protein [Streptomyces albus J1074]
          Length = 216

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   + + ++ L VT R  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 34  FLLVGLVTVGAAVLTVTTRQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVGSVV 93

Query: 68  VFFLFIIMM 76
           V  LF +M+
Sbjct: 94  VLLLFGLML 102


>gi|168700376|ref|ZP_02732653.1| hypothetical protein GobsU_12670 [Gemmata obscuriglobus UQM 2246]
          Length = 410

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 4/104 (3%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V+ +  F+LFS  A++   ++V  +NP     +  F  ++  GLFLLL A F+   T+++
Sbjct: 68  VIGTALFWLFSAGALVFGTVLVVQKNPARGAIAFAFVILSVCGLFLLLAAPFLMAATVII 127

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF----FIGIL 101
           Y GA+IV FLF++M+          R +    GSF    F+G++
Sbjct: 128 YAGAIIVTFLFVLMLSQAGTSNENDRTREPLYGSFAGFAFVGLV 171



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 30/41 (73%), Gaps = 2/41 (4%)

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            NV N+G VLY+Q+   +E++G +LL+++IGA+ +   HR+
Sbjct: 368 GNVRNLGFVLYSQHLLAVELAGTLLLVAVIGAVAIT--HRK 406


>gi|48478734|ref|YP_024341.1| NADH dehydrogenase subunit 6 [Saccharum hybrid cultivar SP-80-3280]
 gi|50812597|ref|YP_054698.1| NADH dehydrogenase subunit 6 [Saccharum officinarum]
 gi|118614545|ref|YP_899460.1| NADH-plastoquinone oxidoreductase subunit 6 [Sorghum bicolor]
 gi|75255217|sp|Q6ENP4|NU6C_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|75261504|sp|Q6L3D7|NU6C_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272344|sp|A1E9X7|NU6C_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|48478636|gb|AAT44656.1| NADH dehydrogenase subunit 6 [Saccharum hybrid cultivar SP80-3280]
 gi|49659581|dbj|BAD27362.1| NADH dehydrogenase ND6 subunit [Saccharum hybrid cultivar NCo 310]
 gi|118201179|gb|ABK79549.1| NADH-plastoquinone oxidoreductase subunit 6 [Sorghum bicolor]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 14/148 (9%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85

Query: 86  PRKKRGF--LGSFFIGILAAEL------IVCASNFMVFSAEGELSRLVFKG--NNVENIG 135
             K + +  +G  F  +L   +       +  +++         +++V +G  NNV+ IG
Sbjct: 86  WSKDKNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163
             L T +  P E+   ILL+S+IGAI +
Sbjct: 146 IHLATDFYLPFELISLILLVSLIGAITM 173


>gi|11467258|ref|NP_043090.1| NADH dehydrogenase subunit 6 [Zea mays]
 gi|1171828|sp|P46621|NU6C_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|902287|emb|CAA60351.1| NADH dehydrogenase ND6 [Zea mays]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 14/148 (9%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85

Query: 86  PRKKRGF--LGSFFIGILAAEL------IVCASNFMVFSAEGELSRLVFKG--NNVENIG 135
             K + +  +G  F  +L   +       +  +++         +++V +G  NNV+ IG
Sbjct: 86  WSKDKNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163
             L T +  P E+   ILL+S+IGAI +
Sbjct: 146 IHLATDFYLPFELISLILLVSLIGAITM 173


>gi|325610491|gb|ADZ36442.1| NADH dehydrogenase subunit 6 [Polyspora chrysandra]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 22/154 (14%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+   NPI S FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M ++ D 
Sbjct: 26  VILFPNPISSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DS 84

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN------- 129
           E      K   L +   GI +   +VC S F+   +   +     +++  K N       
Sbjct: 85  E----YYKDFHLWTVGDGITS---MVCTSIFVSLISTILDTSWYGIIWATKSNQILEQDL 137

Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
             N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 138 ISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|240266491|ref|YP_002970846.1| NADH dehydrogenase subunit 6 [Arthroderma uncinatum]
 gi|237781107|gb|ACR19599.1| NADH dehydrogenase subunit 6 [Arthroderma uncinatum]
          Length = 201

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
          +F++II     +  +NPI SV  LI  F   +   +L+G  F+ +  L+VY+GAV + FL
Sbjct: 23 AFISIIFGIYTIISKNPIVSVLFLIALFSTISVYLILIGLTFIGLSYLLVYIGAVSILFL 82

Query: 72 FIIMMLDIDIE 82
          FI+M+++I I 
Sbjct: 83 FILMLINIRIS 93


>gi|13518490|ref|NP_084848.1| NADH dehydrogenase subunit 6 [Lotus japonicus]
 gi|23821907|sp|Q9BBP1|NU6C_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|13359031|dbj|BAB33248.1| NADH dehydrogenase ND6 [Lotus japonicus]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 22/161 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + NPI+S FSL    V  + L++L  + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVLLTNPIFSAFSLGLTLVCISLLYILSNSHFVAASQLLIYVGAINVLIIFGVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGNN 130
            ++      + R     +G          L+VC S F+ + +   + S        + N 
Sbjct: 80  FMNGSEYYQDFRLWT--VGD------GMTLMVCTSIFISLITTIPDTSWYGIIWTTRSNQ 131

Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
           +         + IG  L T +  P E+   ILL ++IGAIV
Sbjct: 132 IIEQDLISTSQQIGIHLSTDFFLPFELISIILLAALIGAIV 172


>gi|289809208|ref|ZP_06539837.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 69

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 38/55 (69%)

Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           NP++++  L+ + +  +G+F  LGA F   + ++VY GA++V F+F++MML++ 
Sbjct: 8  TNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLG 62


>gi|260677470|ref|YP_003208252.1| NADH-plastoquinone oxidoreductase subunit 6 [Coix lacryma-jobi]
 gi|209361408|gb|ACI43323.1| NADH-plastoquinone oxidoreductase subunit 6 [Coix lacryma-jobi]
          Length = 176

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 14/148 (9%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VSGSE 85

Query: 86  PRKKRGF--LGSFFIGILAAEL------IVCASNFMVFSAEGELSRLVFKG--NNVENIG 135
             K + +  +G  F  +L   +       +  +++         +++V +G  NNV+ IG
Sbjct: 86  WSKDKNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163
             L T +  P E+   ILL+S+IGAI +
Sbjct: 146 IHLATDFYLPFELISLILLVSLIGAITM 173


>gi|320095558|ref|ZP_08027221.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977466|gb|EFW09146.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 318

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 93/185 (50%), Gaps = 6/185 (3%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V +++ F   +   +  +  V+  +   +S   ++   +  A L++   A F+ +  +VV
Sbjct: 14  VGEAVLFACTAVFMVACALGVLFFKKAAHSAVCMVGVMLGLAVLYIANNAPFLGVAQIVV 73

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGE 120
           Y GA+++ FLF+IM++ I        + RG + +  +G L   L VC +  +V S A+  
Sbjct: 74  YTGAIMMLFLFVIMLIGIGESDDYALQGRGRIIAAVLGGLG--LAVCVTAAVVHSTADAR 131

Query: 121 LSRLVFKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +  V   +N  + ++  +L+ ++   +E++G +L+ + +GA+VL    R  + + D ++
Sbjct: 132 TAAPVDPYSNAPITDLAVMLFERHWLSMELAGGLLITAALGAMVLTHSDRL-VPKADQAQ 190

Query: 179 QLESN 183
              S 
Sbjct: 191 TARSK 195


>gi|313679553|ref|YP_004057292.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oceanithermus
           profundus DSM 14977]
 gi|313152268|gb|ADR36119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oceanithermus
           profundus DSM 14977]
          Length = 156

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 33/171 (19%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++ + L VT  + + +  SL   F   AGL+LLLG+  +A I  +V   A+ 
Sbjct: 6   FYALAAFVLVFAILAVTTASMVRAALSLAITFFLIAGLYLLLGSPALAAIQFMVNASAIP 65

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           +  LFIIMM       A PR  +                      +        + + FK
Sbjct: 66  IMTLFIIMMTQSRAS-AGPRSWQ---------------------IVAGLLAAAAALVFFK 103

Query: 128 GN-----------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           GN           + E +G  L      P E++  +LLL+M+GAIVL  R 
Sbjct: 104 GNVGHGDGQITPVSPEALGVNLLQAALLPFEVASVLLLLAMVGAIVLARRR 154


>gi|309322198|ref|YP_003934113.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum]
 gi|197131414|gb|ACH47225.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum]
 gi|300069291|gb|ADJ66412.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum]
          Length = 176

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 22/149 (14%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------DI 79
           N IYS FSL   F+  +  ++L  + FVA   L++YVGA+ +  LF +M +       D+
Sbjct: 31  NLIYSAFSLGLVFICISLFYILANSHFVAAAQLLIYVGAINILILFAVMFINGSEYSKDL 90

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----ELSRLVFKG--NNVE 132
           ++ +           + F+ ++        SN +  S  G       +++V K   +N +
Sbjct: 91  NLGIVRDGATSLVCTTLFLSLI--------SNILDTSWYGIIWTTRATQIVEKDLISNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IG+I
Sbjct: 143 QIGIRLSTDFFLPFELISIILLVALIGSI 171


>gi|312233378|ref|YP_004021588.1| Nad6p [Candida jiufengensis]
 gi|268373365|gb|ACZ03937.1| Nad6p [Candida jiufengensis]
          Length = 163

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 10/156 (6%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           I S   +++ +P+ S+ +L+  FV+ A      G   + M  +++YVGA+ + FLFI  +
Sbjct: 7   ICSTTALSLLSPVQSIVALMALFVSVAISLYSSGYITMGMTYILMYVGAIAILFLFITSL 66

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELI------VCASNF-MVFSAEGELSRLVFKGN 129
           L+I+        K+  +    + ++  +L+      V   NF +V +  G  S    +  
Sbjct: 67  LNIEYSYKGTFNKK-MVYVLLMCLMPLDLLYETFDTVENMNFDIVENMNGMYSTSSLQNW 125

Query: 130 NVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           ++E   +G V YT+YA P  I   IL+LS++GAI +
Sbjct: 126 DLELSTVGTVFYTEYAMPTMIMSLILVLSVMGAIAM 161


>gi|291515385|emb|CBK64595.1| NADH dehydrogenase subunit J [Alistipes shahii WAL 8301]
          Length = 169

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 25/164 (15%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           +S+ L VT R  + +   L+F     AG++  L   F+  + L++Y G + V ++F I++
Sbjct: 19  VSAILAVTTRRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLLIYAGGITVLYVFSILL 78

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILA--AELIVC-----ASNFMVFSAE-GELSRLVFKG 128
                + AE  K  G+    F+G+ A  A L +C       +F+    E GEL       
Sbjct: 79  TSSQGDKAEDLK--GY--KLFVGLGAALASLGICLWITLRHDFLPSHFEHGEL------- 127

Query: 129 NNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168
            +V  IG  L +  +Y Y  P E+   +LL  ++G I L+ R R
Sbjct: 128 -HVRTIGHALMSSGKYGYILPFEVISLLLLACIVGGI-LIARKR 169


>gi|283956942|ref|ZP_06374414.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791443|gb|EFC30240.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 172

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  + F +M  D  
Sbjct: 20  IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136
            E  E  K +    SFF  ++ + +++ A      +   S +  L+       N + +  
Sbjct: 80  KEFKEQLKAK---KSFFTLVVLSAILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            ++++Y    E    +LL++++ AIV  L H+   K + 
Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIV--LTHKELAKEKQ 172


>gi|295837074|ref|ZP_06824007.1| NADH dehydrogenase subunit [Streptomyces sp. SPB74]
 gi|197697181|gb|EDY44114.1| NADH dehydrogenase subunit [Streptomyces sp. SPB74]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F LF  +   ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 24  FVLFGLLTFGAALVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 83

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR 90
           V  LF +M+    I  ++    R
Sbjct: 84  VLLLFGLMLTRAPIGRSDEADSR 106


>gi|34500967|ref|NP_904152.1| NADH dehydrogenase subunit 6 [Amborella trichopoda]
 gi|75275903|sp|Q70XW1|NU6C_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|34481682|emb|CAD45159.1| NADH dehydrogenase ND6 subunit [Amborella trichopoda]
          Length = 177

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 26/164 (15%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + NPIYS FS     V  +   +L  + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVLLTNPIYSAFSSGLVLVRISLFHILSNSYFVAAAQLLIYVGAINVLIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------- 128
            ++              L +   GI +   +VC S  ++FS    +    + G       
Sbjct: 80  FMN-----GSEYYNNFHLWTVGDGISS---VVCTS--ILFSLIATILDTSWYGIIWTTRS 129

Query: 129 ---------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                    +NV+ IG  L T +  P E+   ILL++++GAI +
Sbjct: 130 NQIIEQDLTSNVQQIGIHLSTDFFLPFELISIILLVALVGAIAM 173


>gi|21222987|ref|NP_628766.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces coelicolor A3(2)]
 gi|256785900|ref|ZP_05524331.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24]
 gi|289769793|ref|ZP_06529171.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24]
 gi|10129700|emb|CAC08257.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces coelicolor A3(2)]
 gi|289699992|gb|EFD67421.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24]
          Length = 197

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVGAV+
Sbjct: 20 FLLVGLVTLAAAVVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGAVV 79

Query: 68 VFFLFIIMMLDIDI 81
          V  LF +M+    I
Sbjct: 80 VLILFGLMLTRAPI 93


>gi|290489862|gb|ADD31338.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Berberidopsis
           corallina]
          Length = 176

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 26/152 (17%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    +  +  ++L  + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLICISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
              K   L +   G+ +   +VC S F+  S    +    + G                +
Sbjct: 85  EYYKDFHLWTIGDGVTS---LVCTSIFV--SLITTIPDTSWYGIIWTTRSNQIIEQDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 140 NSQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|240266460|ref|YP_002970818.1| NADH dehydrogenase subunit 6 [Trichophyton mentagrophytes]
 gi|237781090|gb|ACR19583.1| NADH dehydrogenase subunit 6 [Trichophyton mentagrophytes]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 45/73 (61%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          + +F++II     +  +NP+ SV  LI  F   +   +L+G  F+ +  L+VY+GAV + 
Sbjct: 21 ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSIL 80

Query: 70 FLFIIMMLDIDIE 82
          FLFI+M+++I I 
Sbjct: 81 FLFILMLINIRIS 93


>gi|29126612|ref|NP_803515.1| NADH dehydrogenase subunit 6 [Monoblepharella sp. JEL15]
 gi|29029510|gb|AAO64960.1| NADH dehydrogenase subunit 6 [Monoblepharella sp. JEL15]
          Length = 193

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 8/103 (7%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           LV+  R+PI SV  L   ++   G+FLLL   F+ +  ++VYVGA+ + FLF I M+++ 
Sbjct: 20  LVIVSRSPINSVLFLCGLYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILFLFTIFMINVR 79

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           + +         LGSF   + A  L+   + + +F A+   S+
Sbjct: 80  LTLQ--------LGSFASPVAAILLLTGFAIYFIFFADLSFSQ 114


>gi|197131412|gb|ACH47224.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium macrorrhizum]
          Length = 176

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 10/143 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N IYS FSL   F+  +  ++L  + FVA   L++YVGA+ +  LF +M ++   E ++ 
Sbjct: 31  NLIYSAFSLGLVFICISFFYILANSHFVAAAQLLIYVGAINILILFAVMFIN-GSEYSKD 89

Query: 87  RKKRGFLGSFFIGILAAELIVC-ASNFMVFSAEG-----ELSRLVFKG--NNVENIGKVL 138
              R  +G     ++   L +   SN +  S  G       +++V K   +N + IG  L
Sbjct: 90  FNLRT-VGDGVTSLVCTTLFLSLISNILDTSWYGIIWTTRATQIVEKDLISNSQQIGIRL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAI 161
            T +  P E+   ILL+++IGAI
Sbjct: 149 STDFFLPFELISIILLVALIGAI 171


>gi|28261772|ref|NP_783285.1| NADH dehydrogenase subunit 6 [Atropa belladonna]
 gi|75248022|sp|Q8S8U6|NU6C_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|20068386|emb|CAC88099.1| NADH degydrogenase ND6 subunit [Atropa belladonna]
          Length = 176

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130
             K   L +   GI +   +VC S F+  S    +S   + G                +N
Sbjct: 86  YYKDFHLWTVGDGITS---MVCISLFI--SLITTISDTSWYGIIWTTRSNQIIEQDFLSN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL ++IGAI
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLDALIGAI 171


>gi|328884360|emb|CCA57599.1| NADH-ubiquinone oxidoreductase chain J [Streptomyces venezuelae
           ATCC 10712]
          Length = 182

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 20  FLLVGLVTLGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 79

Query: 68  VFFLFIIMMLDIDI---EVAEPRKK 89
           V  LF +M+    I     A+ R K
Sbjct: 80  VLLLFGLMLTKAPIGRSPDADSRNK 104


>gi|218176294|ref|YP_002364551.1| NADH-plastoquinone oxidoreductase subunit 6 [Festuca arundinacea]
 gi|215882378|gb|ACJ70808.1| NADH-plastoquinone oxidoreductase subunit 6 [Festuca arundinacea]
          Length = 160

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 14/132 (10%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85

Query: 86  PRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNVENIG 135
             K + +  +G  F  I+   ++      +  +++         +++V +G  NNV+ +G
Sbjct: 86  CSKDKNYWTIGDGFTSIVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQMG 145

Query: 136 KVLYTQYAYPLE 147
             L T +  P E
Sbjct: 146 IHLATDFYLPFE 157


>gi|71057052|emb|CAJ18331.1| NADH dehydrogenase subunit 6 [Secale cereale]
          Length = 220

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ ++
Sbjct: 61  TNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHGTTKVKRQDVFRR 111


>gi|139388966|ref|YP_001123692.1| NADH dehydrogenase subunit 6 [Lepidium virginicum]
 gi|221272329|sp|A4QLG2|NU6C_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286896|dbj|BAF50517.1| NADH dehydrogenase ND6 [Lepidium virginicum]
          Length = 176

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 26/151 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F     + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLFCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130
                 L +   GI +   +VC +  ++FS    +    + G                +N
Sbjct: 90  FN----LWTVGNGITS---LVCTT--ILFSLLSTILDTSWYGVIWTTRLNQILEQDLISN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            + IG  L T +  P E+   ILL+++IGAI
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|319760608|ref|YP_004124546.1| NADH-quinone oxidoreductase subunit J [Candidatus Blochmannia
          vafer str. BVAF]
 gi|318039322|gb|ADV33872.1| NADH-quinone oxidoreductase subunit J [Candidatus Blochmannia
          vafer str. BVAF]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M  + FY+   ++I+++  V+   N ++S+  L+ + ++ +     L A FV  I ++VY
Sbjct: 1  MMVVLFYISGCVSILATICVIFNNNTVHSLLYLVLSLLSVSLNLFSLKASFVGAIEVIVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91
           GA++V FLF+IMMLDID        K G
Sbjct: 61 AGAIMVLFLFVIMMLDIDSVTINFDNKTG 89


>gi|11497584|ref|NP_054991.1| NADH dehydrogenase subunit 6 [Spinacia oleracea]
 gi|18203253|sp|Q9M3I8|NU6C_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|7636165|emb|CAB88787.1| NADH dehydrogenase ND6 subunit [Spinacia oleracea]
          Length = 176

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 24/161 (14%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ +  VV   NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGALGVVLFTNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIYVGAINVLIIFSVM 79

Query: 76  MLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFM-----VFSAEGELSRLVFKGN 129
            +      + P   + F L +   G+ +   +VC S F+     + +          K N
Sbjct: 80  FM------SGPEYDKKFQLWTVGDGVTS---LVCISLFVSLISTILNTSWYGIIWTTKSN 130

Query: 130 NV---------ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            +         + IG  L T +  P E+   ILL+S+IGAI
Sbjct: 131 QILEQDLINASQQIGIHLSTDFFLPFELISIILLVSLIGAI 171


>gi|326777313|ref|ZP_08236578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657646|gb|EGE42492.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           cf. griseus XylebKG-1]
          Length = 212

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 38  FLLVGLVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 97

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V  LF +M+    I  + P    G          AA   +       F      + +   
Sbjct: 98  VLLLFGLMLTRAPIGRS-PDADSGNRWVALGVAAAAAAALVWVVVDAF----RTTWIDLD 152

Query: 128 G---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK-RQDISKQLESN 183
           G    + E  G  L+  +  P E    +LL +++GAIVL  +H  D   R   S + E +
Sbjct: 153 GPAQGSTEVTGAFLFRNWVLPFEALSVLLLAALVGAIVLSRKHDTDTTVRPGPSGKEERS 212


>gi|296120539|ref|YP_003628317.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Planctomyces limnophilus DSM 3776]
 gi|296012879|gb|ADG66118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Planctomyces limnophilus DSM 3776]
          Length = 290

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M +    F +F+    + + +V   +N +   F L+ +  +AAGLF LL A+F+A   L+
Sbjct: 1  MTVLQFLFAVFASTTCLGAVMVALTQNIVRMAFWLMVSVASAAGLFFLLHADFLAAAQLL 60

Query: 61 VYVGAVIVFFLFIIMM 76
          VY+G  +V  +F +M+
Sbjct: 61 VYLGGTVVILVFGVML 76


>gi|284034160|ref|YP_003384091.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Kribbella
           flavida DSM 17836]
 gi|283813453|gb|ADB35292.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kribbella
           flavida DSM 17836]
          Length = 277

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 91/176 (51%), Gaps = 8/176 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+L + + ++++  ++ VR  ++S   L    +  A  +    A F+  + ++VY GA++
Sbjct: 9   FWLLAPVMVLAAIAMILVRKAVHSALLLATVMICLAVQYAAQDAPFLFAVQIIVYTGAIL 68

Query: 68  VFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           + FLF++M++ +D     V   R +R   G  F+G   A L+V A    V+     L + 
Sbjct: 69  MLFLFVLMLVGVDASDSLVETIRGQRLLAGLAFLGF--AVLVVFAVGNAVYGDPIGLGQA 126

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
              GN  + I ++L+ +Y +  E++  +L+ + +GA  +ML HR  + R+   + L
Sbjct: 127 QPDGNP-KGIAQLLFGKYVFAFEVTSALLITAAMGA--MMLAHRERLTRKKTQRDL 179


>gi|325210978|ref|YP_004286056.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium thurberi]
 gi|290775840|gb|ADD62336.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium thurberi]
          Length = 176

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 22/159 (13%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M ++     +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMN----GSE 85

Query: 86  PRKKRGF--LGSFFIGILAAELIVC-ASNFMVFSAEGEL----SRLVFKGN---NVENIG 135
             K      +G+    ++   ++V   +  +  S  G +    S  + + +   N + IG
Sbjct: 86  YYKDFNLWTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             L T +  P E    ILL+++IGAI        D+ RQ
Sbjct: 146 IHLATDFFLPFEFISIILLVALIGAI--------DVTRQ 176


>gi|91214192|ref|YP_538815.1| NADH dehydrogenase subunit 6 [Glycine max]
 gi|122202478|sp|Q2PMN5|NU6C_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|83595793|gb|ABC25174.1| NADH-plastoquinone oxidoreductase subunit 6 [Glycine max]
          Length = 176

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 22/161 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV   NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVLFTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLIYVGAINVLIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-----VFSAEGELSRLVFKGNN 130
            ++          +   L +   GI    L+VC S F+     +            + N 
Sbjct: 80  FMN-----GSEYYQDFRLWTVGDGI---TLMVCTSIFVSLITTILDTSWHGIIWTTRPNQ 131

Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
           +         + IG  L T +  P E+   ILL+++IGAIV
Sbjct: 132 IIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIV 172


>gi|290489870|gb|ADD31342.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ficus sp.
           Moore 315]
          Length = 176

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V+ + L++L  + FVA   L++YVGA+ V  +F +M ++     +E
Sbjct: 30  NNPIYSAFSLGLVLVSISLLYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN----GSE 85

Query: 86  PRKKRGF--LGSFFIGILAAELIVCASNFMVF-------SAEG-----ELSRLVFKG--N 129
             K      +G+ F       L++C S F +        S  G      L++++     +
Sbjct: 86  YYKDFNLWTVGNGF------TLLICTSIFGLLITTITDISWYGIIWTTRLNQIIEHDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           N + IG  L T +  P E    ILL ++IGAI +
Sbjct: 140 NSQQIGIHLSTDFFLPFEFISIILLAALIGAITV 173


>gi|116515046|ref|YP_802675.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Cc (Cinara
          cedri)]
 gi|116256900|gb|ABJ90582.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Cc (Cinara
          cedri)]
          Length = 161

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 45/70 (64%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+LFSF+A+  S L++   N IYS+  LI    + A +F +LG  F+ ++ +++Y GA+ 
Sbjct: 5  FWLFSFLAVFFSILIMISINLIYSLIYLILLIFSIASIFCVLGLSFIGVLEVIIYAGAIT 64

Query: 68 VFFLFIIMML 77
          V F+ I +++
Sbjct: 65 VLFILIAILM 74


>gi|282860767|ref|ZP_06269833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           sp. ACTE]
 gi|282564503|gb|EFB70039.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           sp. ACTE]
          Length = 251

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 8/174 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L     + ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++YVG+++
Sbjct: 22  FLLVGIATLGAAVVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSIV 81

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V  LF +M+    I     R      G+ ++ +  A     A  ++V  A    + +   
Sbjct: 82  VLLLFGLMLTRAPIG----RSPDADSGNRWVALGVAVASAGALVWVVVDAF-RATWIDLD 136

Query: 128 G---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G    + +  G  L+  +  P E    +LL +++GAIVL  +  +D K  + S+
Sbjct: 137 GPAQGSTDVTGAFLFRNWVLPFEALSVLLLAALVGAIVLSRKADKDGKGPEASE 190


>gi|169794125|ref|YP_001718489.1| NADH dehydrogenase subunit 6 [Manihot esculenta]
 gi|221272332|sp|B1NWK2|NU6C_MANES RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|157695937|gb|ABV66206.1| NADH-plastoquinone oxidoreductase subunit 6 [Manihot esculenta]
          Length = 176

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M +       D
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136
            ++             S F+ ++    I+  +++       + ++++ +   +N + IG 
Sbjct: 90  FNLWTVGSGVTSLVCTSIFVSLIT---IIPDTSWYGIIWTTKTNQIIEQDLISNGQQIGI 146

Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161
            L T +  P E    ILL+++IGAI
Sbjct: 147 HLSTDFFLPFEFISIILLVALIGAI 171


>gi|126792910|gb|ABO27311.1| NADH dehydrogenase subunit 6 [Rhynchopsitta pachyrhyncha]
          Length = 170

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 21/159 (13%)

Query: 9   YLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           Y  +F+ +   ++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G 
Sbjct: 3   YFLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F++ + +       A+P  +  + G + +G  A  L+   +   V+   G      
Sbjct: 63  MLVVFVYSVSL------AADPFPQA-WGGRYVVGY-ALGLVPIGAGLAVWGWGGG----- 109

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
           FK + V+++G V        L+ SG  L  S  G + L+
Sbjct: 110 FKMDTVDSVGGVFVR-----LDFSGVALFYSCGGGMFLV 143


>gi|90579197|ref|ZP_01235007.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Vibrio
          angustum S14]
 gi|90440030|gb|EAS65211.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Vibrio
          angustum S14]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 49/76 (64%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M+  ++ FY  S + ++++  ++ V+ P++    L  + +  A +F LLGA F+A + ++
Sbjct: 1  MLTWNIIFYASSAIMLLAAISLLFVKEPMHGAVYLTTSLLALAVIFYLLGAPFIAALQII 60

Query: 61 VYVGAVIVFFLFIIMM 76
          +YVGA++V F+F IM+
Sbjct: 61 LYVGAIMVLFVFFIML 76


>gi|110639003|ref|YP_679212.1| NADH:ubiquinone oxidoreductase subunit J [Cytophaga hutchinsonii
          ATCC 33406]
 gi|110281684|gb|ABG59870.1| NADH dehydrogenase subunit J [Cytophaga hutchinsonii ATCC 33406]
          Length = 172

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 49/80 (61%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M  + F+ F+   + S+ +++  RN +Y+  +L+ + +  A LF++ G++ +A++ LVVY
Sbjct: 1  MIEIVFFFFAIQLLSSALVILFTRNVVYAAIALMSSLLGVAALFVIAGSDLLAVVQLVVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIE 82
          VG V++  LF ++    D E
Sbjct: 61 VGGVLILLLFGVLYTYRDPE 80


>gi|57238583|ref|YP_179714.1| NADH dehydrogenase subunit J [Campylobacter jejuni RM1221]
 gi|57167387|gb|AAW36166.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni
           RM1221]
 gi|315059020|gb|ADT73349.1| NADH-ubiquinone oxidoreductase chain J [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 172

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 10/159 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  + F +M  D  
Sbjct: 20  IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79

Query: 81  IEVAEPRKKRGFLGSFF-IGILAAELIVC---ASNFMVFSAEGELSRLVFKGNNVENIGK 136
            E  E  K +    SFF + +L+A L++       +   S +  L+       N + +  
Sbjct: 80  KEFKEQLKAK---KSFFTLVVLSAILLLTMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            ++++Y    E    +LL++++ AIV  L H+   K + 
Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIV--LTHKELTKEKQ 172


>gi|86152855|ref|ZP_01071060.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843740|gb|EAQ60950.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 172

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  + F +M  D  
Sbjct: 20  IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136
            E  E  K +    SFF  ++ + +++ A      +   S +  L+       N + +  
Sbjct: 80  KEFKEQLKAK---KSFFTLVVLSAILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            ++++Y    E    +LL++++ AI   L H+   K + 
Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIT--LTHKELTKEKQ 172


>gi|169142682|ref|YP_001687109.1| NADH dehydrogenase subunit 6 [Polytomella capuana]
 gi|157429027|gb|ABV56561.1| NADH dehydrogenase subunit 6 [Polytomella capuana]
          Length = 144

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 14/122 (11%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           +V   +P  ++   I  +++   +  +LG EF+A++  +VYVGA+ V FLF++M++ +  
Sbjct: 18  IVLTTSPFMALMYSIVLYLDVQLILTMLGFEFMALVYALVYVGALAVLFLFVVMLIRV-- 75

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141
                 +   FL       L+  + +  +  + FSA+      +  G ++ N G +LYT 
Sbjct: 76  ------QAAAFLS------LSTNVSMWVAGIIGFSADTTPRSWMIAGESLLNFGALLYTS 123

Query: 142 YA 143
           YA
Sbjct: 124 YA 125


>gi|167391857|ref|YP_001671735.1| NADH dehydrogenase subunit 6 [Carica papaya]
 gi|221272314|sp|B1A987|NU6C_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|166344184|gb|ABY86834.1| NADH-plastoquinone oxidoreductase subunit 6 [Carica papaya]
          Length = 176

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 24/150 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL F     +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGFVLACISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN------GS 84

Query: 87  RKKRGF-LGSFFIGILAAELIVCASNFMVF-------SAEG-----ELSRLVFKG--NNV 131
              R F L +   GI +   +VC S F+         S  G      L++++ +   ++ 
Sbjct: 85  EYYRDFNLWTIGDGITS---LVCTSIFLSLITTILDTSWYGVIWTTRLNQILEQDLISSS 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           + IG  L T +  P E+   ILL+++IGAI
Sbjct: 142 QQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|290489868|gb|ADD31341.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Euonymus
           americanus]
          Length = 176

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 22/150 (14%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    +  A  ++L  + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLICIALFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEG-----ELSRLVFKG--NNV 131
                 +L +   G+ +   +VC S F++        S  G       ++++ K    N 
Sbjct: 85  EYHNAFYLWNAGGGVTS---LVCTSIFLLLITTIPDTSWYGIIWTTRSNQIIEKDLITNS 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           + IG  L T +  P E+   ILL+++IGAI
Sbjct: 142 QQIGIRLSTDFFLPFELISIILLVALIGAI 171


>gi|302553483|ref|ZP_07305825.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces viridochromogenes
           DSM 40736]
 gi|302471101|gb|EFL34194.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces viridochromogenes
           DSM 40736]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 12/190 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   +   ++ + VT R  +++   L+      A  +LLL AEF+A + +++YVG+V+
Sbjct: 20  FLLVGLVTFGAAIVTVTTRQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 79

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-----EGELS 122
           V  LF +M+    I  + P    G   +     +AA   +       F A     +G  +
Sbjct: 80  VLLLFGLMLTRAPIGRS-PDADSGNRWAALTVAVAAAAALVWVVVDAFRATWIDLDGPAA 138

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                  + E  G  L+  +  P E    +LL +++GAIVL  + + +      S    S
Sbjct: 139 ------GSTEATGASLFQNWVLPFEALSVLLLAALVGAIVLSRKAKAEAATASGSTPSGS 192

Query: 183 NPDNSIVMVK 192
            P  S  + +
Sbjct: 193 TPAGSTPVTR 202


>gi|167752194|ref|ZP_02424321.1| hypothetical protein ALIPUT_00436 [Alistipes putredinis DSM 17216]
 gi|167660435|gb|EDS04565.1| hypothetical protein ALIPUT_00436 [Alistipes putredinis DSM 17216]
          Length = 169

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + +   + S+ L VT +  + +   L+F     AG++  L   F+  + L++Y G + 
Sbjct: 10  FTVLAVFTLASAVLAVTTKRILRAATFLLFVLFGTAGIYFQLNYSFLGAVQLLIYAGGIT 69

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVC-----ASNFMVFSAE-G 119
           V ++F I++   + + AE  K RG+   F +GILA  A L +C        F+    E G
Sbjct: 70  VLYVFSILLTSSEGDKAE--KLRGY--KFVVGILATLAGLAICLFVTLRHQFLPEHFEHG 125

Query: 120 ELSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHR 168
           EL+        V  IG  L +     Y  P E+   +LL  ++G I L+ R R
Sbjct: 126 ELA--------VREIGFALMSPEKQGYLLPFEVISLLLLACIVGGI-LIARKR 169


>gi|329938294|ref|ZP_08287745.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces griseoaurantiacus
           M045]
 gi|329302783|gb|EGG46673.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces griseoaurantiacus
           M045]
          Length = 215

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 34  FLLVGLVTLGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 93

Query: 68  VFFLFIIMMLDIDI 81
           V  LF +M+    I
Sbjct: 94  VLLLFGLMLTRAPI 107


>gi|91984046|ref|YP_567131.1| NADH dehydrogenase subunit 6 [Vitis vinifera]
 gi|122236488|sp|Q0ZIW5|NU6C_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|91701704|gb|ABE47588.1| NADH-plastoquinone oxidoreductase subunit 6 [Vitis vinifera]
          Length = 176

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPIYS FSL   FV  +  ++   + FVA   L++YVGA+ V  +F +M +       D
Sbjct: 30  TNPIYSAFSLGLVFVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
            ++             S F  ++   L       +  +   ++       N+ + IG  L
Sbjct: 90  FNLWTVGDGVTSVVCTSIFASLITTILDTSWYGIIWTTRSNQIIEQDLISNS-QQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAI 161
            T +  P E+   ILL+++IGAI
Sbjct: 149 STDFFLPFELISIILLVALIGAI 171


>gi|240266713|ref|YP_002970790.1| NADH dehydrogenase subunit 6 [Trichophyton rubrum]
 gi|237781081|gb|ACR19575.1| NADH dehydrogenase subunit 6 [Trichophyton rubrum]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 45/73 (61%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          + +F++II     +  +NP+ SV  LI  F   +   +++G  F+ +  L+VY+GAV + 
Sbjct: 21 ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLIMIGLTFIGLSYLLVYIGAVSIL 80

Query: 70 FLFIIMMLDIDIE 82
          FLFI+M+++I I 
Sbjct: 81 FLFILMLINIRIS 93


>gi|290489848|gb|ADD31331.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ehretia
           acuminata]
          Length = 176

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------DI 79
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M +       D 
Sbjct: 31  NPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
            +             S FI ++   L       +  +   ++       N+ + IG  L 
Sbjct: 91  HLWTVGDGVTSMVCTSLFISLITTILDTSWYGIIWTTKSNQIIEQDLISNS-QQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAI 161
           T +  P E    ILL+++IGAI
Sbjct: 150 TDFFLPFEFISIILLVALIGAI 171


>gi|290489874|gb|ADD31344.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Heuchera
           sanguinea]
          Length = 176

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + NPIYS FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M ++   
Sbjct: 26  VVLLTNPIYSAFSLGLVLVCISLFYISSNSHFVAAAQLLIYVGAINVLIIFAVMFMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---------- 128
                  K   L +   G+ +   +VC S F   +    +     +++            
Sbjct: 83  --GSGSYKDFTLWTVGDGVTS---VVCTSIFVSLITIIPDTSWYGIIWTTRSNQIIEQDL 137

Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            +N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 138 ISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|283795021|ref|YP_003359412.1| NADH dehydrogenase subunit 6 [Olea europaea]
 gi|330850796|ref|YP_004376474.1| NADH dehydrogenase subunit 6 [Olea europaea subsp. europaea]
 gi|281428740|gb|ADA69979.1| NADH dehydrogenase subunit 6 [Olea europaea]
 gi|291059307|gb|ADD72143.1| NADH-plastoquinone oxidoreductase subunit 6 [Olea europaea]
 gi|328795486|emb|CBR30368.1| NADH dehydrogenase subunit 6 [Olea europaea subsp. europaea]
          Length = 176

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 22/162 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + NPIYS FSL       +  ++L  + FVA   L++YVGA+ +  +F +M
Sbjct: 20  ILGSLGVVLLPNPIYSAFSLGLVLFCISLFYILSNSYFVAAAQLLIYVGAINILIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN- 129
            +           K   L +   G+ +   IVC S F+ + +   + S        K N 
Sbjct: 80  FMS-----GSEYYKDFHLWTVGDGVTS---IVCTSLFISLITTIPDTSWYGIIWTTKSNQ 131

Query: 130 --------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                   N + IG  L T +  P E+   ILL+++IGAI +
Sbjct: 132 IIEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAI 173


>gi|46446202|ref|YP_007567.1| putative NADH-ubiquinone oxidoreductase chain J [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399843|emb|CAF23292.1| putative NADH-ubiquinone oxidoreductase chain J [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 170

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 87/168 (51%), Gaps = 16/168 (9%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++F  + +ISSF ++    PI +    + A ++ A L++ L A+F+A + +++Y GA++V
Sbjct: 11  WIFGILLLISSFGILLTSKPIQASLCFLLALLSLAALYVELSAQFIAAMQVLIYAGAILV 70

Query: 69  FFLFIIMML-----DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SAEGEL 121
            F+F+I++       I   VA+ +          I ILA    + A  F+ +  S     
Sbjct: 71  IFMFVIVLFQDAHNQIHQFVAQSKSS--------ISILAIAAFLLAFGFLSYYLSELSTS 122

Query: 122 SRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           ++ + +G     ++G +LY  + +P E    I L++++GA+ +  + R
Sbjct: 123 TKSLPEGFGTAHSLGYLLYVNFFFPFEAVILIFLIAVVGALYIGRKER 170


>gi|290489864|gb|ADD31339.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Bulnesia
           arborea]
          Length = 176

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 22/162 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV   N +YS FSL       + L++   + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVLFSNSMYSAFSLGLVLFCISLLYISSNSHFVAAAQLLIYVGAINVLIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVFKG---- 128
            ++     +E  K    L +F  GI +   +VC S F        +     +++      
Sbjct: 80  FMN----NSEYSKNFNIL-TFRNGITS---LVCISIFFSLVTTILDTSWYSIIWTTRSNH 131

Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                  NN + IG  L T +  P E+   ILL+S+IGAI +
Sbjct: 132 IIEQELINNSQQIGIHLSTDFFLPFELISIILLVSLIGAIAM 173


>gi|156598541|gb|ABU85528.1| NADH-plastoquinone oxidoreductase subunit 6 [Passiflora biflora]
          Length = 176

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          VV   NPIYS FSL F  V  +  ++L  + FVA   L++YVGA+ V  LF +M ++   
Sbjct: 26 VVLFTNPIYSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFTVMFMN--- 82

Query: 82 EVAEPRKKRG 91
              P   +G
Sbjct: 83 ---GPEYSKG 89


>gi|3122566|sp|Q36836|NU6M_TRIRU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|1017449|emb|CAA61356.1| ND6 [Trichophyton rubrum]
          Length = 203

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 45/73 (61%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          + +F++II     +  +NP+ SV  LI  F   +   +++G  F+ +  L+VY+GAV + 
Sbjct: 21 ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLIMIGLTFIGLSYLLVYIGAVSIL 80

Query: 70 FLFIIMMLDIDIE 82
          FLFI+M+++I I 
Sbjct: 81 FLFILMLINIRIS 93


>gi|197294162|ref|YP_002149782.1| NADH-plastoquinone oxidoreductase subunit 6 [Cicer arietinum]
 gi|221272317|sp|B5LMS3|NU6C_CICAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|197089850|gb|ACH41120.1| NADH-plastoquinone oxidoreductase subunit 6 [Cicer arietinum]
          Length = 176

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 22/161 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV + NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ +  +F +M
Sbjct: 20  ILGSLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLIYVGAINILIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGNN 130
            ++     +    +   L +   GI    LIVC S F+       +     +++  + N 
Sbjct: 80  FMN-----SSEYYQDFNLWTVGDGI---TLIVCTSIFVSLVTTIPDTSWYGIIWTTRPNQ 131

Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
           +         + IG  L T +  P E+   ILL+++IG IV
Sbjct: 132 IIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGTIV 172


>gi|194442196|ref|YP_002038856.1| NADH dehydrogenase subunit 6 [Tomistoma schlegelii]
 gi|81295137|emb|CAH18641.1| NADH dehydrogenase subunit 6 [Tomistoma schlegelii]
          Length = 175

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 14/180 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF L S M ++   LV       Y V SL+FA +++ GL  + G  F+ M+ L++Y
Sbjct: 1   MGMTFFALSSLM-LVGVVLVSAGATTHYGVISLLFAALSSGGLLAVGGGSFMPMVVLLIY 59

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVC---ASNFMVFSAE 118
           +G ++V F F +   D    E       +G      +G+  A L+V    A   M     
Sbjct: 60  LGGLLVVFTFCVGFTDDKYCEFWGVGASKG-----LVGVCGAGLMVVGYRAYKHMWMGVL 114

Query: 119 GELSRLV--FKGN-NVENIGKVLYTQYAYPLEI-SGFILLLSMIGAIVLMLRHRRDIKRQ 174
           G  S  V  + G+ + E +G  L+    +   + SG+ LL+ +   + ++  HRR   R 
Sbjct: 115 GGFSDAVENWSGDISDELLGASLFYLEGWGFVVLSGWALLIVLFTIMSIIRGHRRGALRS 174


>gi|182436713|ref|YP_001824432.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465229|dbj|BAG19749.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 228

 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 39  FLLVGLVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 98

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V  LF +M+    I    P    G          AA   +       F      + +   
Sbjct: 99  VLLLFGLMLTRAPIG-RSPDADSGNRWVALGVAAAAATALVWVVVDAF----RTTWIDLD 153

Query: 128 G---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G    + E  G  L+  +  P E    +LL +++GAIVL  +H  D
Sbjct: 154 GPAQGSTEVTGAFLFRNWVLPFEALSVLLLAALVGAIVLSRKHDTD 199


>gi|242278967|ref|YP_002991096.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           salexigens DSM 2638]
 gi|242121861|gb|ACS79557.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           salexigens DSM 2638]
          Length = 174

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 3/167 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F +++ + +    + V   + + ++  LI + +  AG+++L+ A F+A + +++YVGAV 
Sbjct: 10  FVVYTLLILGGGCIAVGAHSLVRAMVGLISSLLGVAGMYMLMAAPFMAFMQILIYVGAVC 69

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V   F IM+   D    E   +R   G   +  L     V    F++   +     +  +
Sbjct: 70  VLIFFAIMLTQADDHGVEAGSRRP--GKSALAALTFIAPVFVIGFILIKFQPVSIHIPVE 127

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
              +E IGK L   Y    E+   +LL +M GA++L    +    R+
Sbjct: 128 VPLIE-IGKGLLEDYPVAFELISVVLLAAMAGAVLLAFEQKGKKGRK 173


>gi|317046224|ref|YP_004072513.1| NADH dehydrogenase subunit 6 [Corynocarpus laevigata]
 gi|309252941|gb|ADO60361.1| NADH dehydrogenase subunit 6 [Corynocarpus laevigata]
          Length = 176

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 22/154 (14%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + N IYS FSL    V  A  ++L  + FVA   L++YVGA+ V  +F +M +    
Sbjct: 26  VVLLTNSIYSAFSLGLVLVCIALFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMK--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGEL----SRLVFKGN- 129
                  K   L +   G+    L+VC S F+         S  G +    S  + + + 
Sbjct: 83  --GSEYSKDFPLWTVGSGV---TLLVCTSIFVSLINTILDTSWYGIIWTTRSNQILEQDL 137

Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
             N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 138 ISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|290489866|gb|ADD31340.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Cornus
           florida]
          Length = 176

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 22/150 (14%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            N I+S FSL    V  +  ++L  + FVA   L++YVGA+ +  +F +M ++       
Sbjct: 30  NNTIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVFKG-----------NNV 131
              K  +L +   G+ +   +VC S F+       +     +++             NN 
Sbjct: 85  EYHKDFYLWTVGDGVTS---MVCTSIFVSLITTILDTSWYGIIWTTRSNQILEQDLINNS 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           + IG  L T +  P E+   ILL+++IGAI
Sbjct: 142 QQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|307327970|ref|ZP_07607151.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Streptomyces violaceusniger Tu 4113]
 gi|306886275|gb|EFN17280.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Streptomyces violaceusniger Tu 4113]
          Length = 194

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L     + ++ L VT +  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 24 FLLVGIATLGAAVLTVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVGSVV 83

Query: 68 VFFLFIIMMLDIDI 81
          V  LF +M+    I
Sbjct: 84 VLLLFGLMLTKAPI 97


>gi|46202537|ref|ZP_00208557.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J)
          [Magnetospirillum magnetotacticum MS-1]
          Length = 57

 Score = 44.3 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 2  VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLF 46
          +  +L FY+F+ +A+ S  +V++ RNP++SV  LI AF NA   F
Sbjct: 1  MFTALIFYMFAAIAVASGVMVISSRNPVHSVLWLILAFFNARACF 45


>gi|24213588|ref|NP_711069.1| NADH dehydrogenase (ubiquinone) chain J [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24194380|gb|AAN48087.1| NADH dehydrogenase (ubiquinone) chain J [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 233

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 52/212 (24%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q L F+LF+ + I+SS  V+   NPI +   L+ +F + A ++ ++ A F+A + L+VY 
Sbjct: 8   QLLLFFLFASVMILSSLGVIFHPNPITAAVLLVLSFFSLAAIYAVMNAIFIATMQLLVYA 67

Query: 64  GAVIVFFLFIIMMLDIDIEVA------EPRKKRGFLG-SFFIGIL---------AAELIV 107
           GA++V  +F++M+L +  +        +P KK  +LG   F+G+L          +E  V
Sbjct: 68  GAIMVLVVFVLMLLSLRDDAPRFFIFEKPIKKLLYLGLVMFLGVLLITAVQDGIPSETTV 127

Query: 108 C---ASN----FMVFS-----------------------------AEGELSRLVFKGNNV 131
               A N    F+ +S                              E +  +++    N 
Sbjct: 128 PIGYAQNKDGKFVGYSFQISKNIKQTNTKSTLETPKTTSENQNHVHEKDTDQIILTSGNT 187

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
             +G  ++ +Y  P E+   +LL +++GA+VL
Sbjct: 188 AAVGSAMFLRYLLPFELISILLLAAVLGAVVL 219


>gi|297192747|ref|ZP_06910145.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|197721066|gb|EDY64974.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 214

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 21 FLLVGVVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 80

Query: 68 VFFLFIIMMLDIDI 81
          V  LF +M+    I
Sbjct: 81 VLLLFGLMLTKAPI 94


>gi|170289769|ref|YP_001736585.1| NADH dehydrogenase subunit J [Candidatus Korarchaeum cryptofilum
          OPF8]
 gi|170173849|gb|ACB06902.1| NADH dehydrogenase subunit J [Candidatus Korarchaeum cryptofilum
          OPF8]
          Length = 160

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L S +A++SS L+V  R+ +YS F L    +  + LF LLG   +A+  LVVYVGA +
Sbjct: 12 FLLSSALALVSSALIVFHRSIVYSAFFLSMLGIANSILFTLLGFPIIALFHLVVYVGAAV 71

Query: 68 VFFLFIIMMLDIDIEVAEP 86
           F LF ++M+  +    EP
Sbjct: 72 TFILFSLVMMR-EAPTVEP 89


>gi|68164857|ref|YP_247653.1| NADH dehydrogenase subunit 6 [Cucumis sativus]
 gi|67511452|emb|CAJ00812.1| NADH dehydrogenase subunit VI [Cucumis sativus]
          Length = 176

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 22/160 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  V+   N IYS FSL    V+ +  ++L  A+FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIYVGAINVLIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---- 128
            +           K   L +   G+     +VC S F   M    +     +++      
Sbjct: 80  FMK-----GSEYSKDFNLWTVGNGV---TFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQ 131

Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                  +N + IG  L T +  P E+   ILL ++IGAI
Sbjct: 132 ILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAI 171


>gi|45658582|ref|YP_002668.1| NADH dehydrogenase I subunit J [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601826|gb|AAS71305.1| NADH dehydrogenase I J subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 233

 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 52/212 (24%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q L F+LF+ + I+SS  V+   NPI +   L+ +F + A ++ ++ A F+A + L+VY 
Sbjct: 8   QLLLFFLFASVMILSSLGVIFHPNPITAAVLLVLSFFSLAAIYAVMNAIFIATMQLLVYA 67

Query: 64  GAVIVFFLFIIMMLDIDIEVA------EPRKKRGFLG-SFFIGIL---------AAELIV 107
           GA++V  +F++M+L +  +        +P KK  +LG   F+G+L          +E  V
Sbjct: 68  GAIMVLVVFVLMLLSLRDDAPRFFIFEKPIKKLLYLGLVMFLGVLLITAVQDGIPSETTV 127

Query: 108 C---ASN----FMVFS-----------------------------AEGELSRLVFKGNNV 131
               A N    F+ +S                              E +  +++    N 
Sbjct: 128 PIGYAQNKDGKFVGYSFQISKNIKQTNTKSTLETPKTTSENQNHVHEKDTDQIILTSGNT 187

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
             +G  ++ +Y  P E+   +LL +++GA+VL
Sbjct: 188 AAVGSAMFLRYLLPFELISVLLLAAVLGAVVL 219


>gi|58578662|ref|YP_203288.1| NADH dehydrogenase subunit 6 [Herpestes javanicus]
 gi|57014066|gb|AAW32555.1| NADH dehydrogenase subunit 6 [Herpestes javanicus]
          Length = 175

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  FSLI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       AEP
Sbjct: 25  SPIYGGFSLIVAGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAM------AAEP 78

Query: 87  -----RKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSRLVFKGNNV----- 131
                   +  LG+   G+LA  L+ C         ++F   G    +V+   +      
Sbjct: 79  YPETWSSNKAVLGALITGVLAELLMACYILEDEDTEVIFGFNGAGDWVVYDTGDSGFFSE 138

Query: 132 ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           E +G   LY+   + + ++G+ LL   IG +V+M   R +
Sbjct: 139 EAMGIAALYSYGTWLVVVTGWSLL---IGVLVIMEITRGN 175


>gi|194132141|gb|ACF33395.1| NADH-plastoquinone oxidoreductase subunit 6 [Gonystylus bancanus]
          Length = 176

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M +       D
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
           +++ +           S  + ++     +     +  +   ++       N+ + IG  L
Sbjct: 90  LNLWIVGDGVTSLVCTSILVSLITTIFDMSWYGIIWTTRSNQIIEQDLISNS-QQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAI 161
            T +  P E+   ILL+ +IGAI
Sbjct: 149 STDFFLPFELISIILLVGLIGAI 171


>gi|122202878|sp|Q2QD38|NU6C_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|74027151|gb|AAZ94701.1| NADH dehydrogenase subunit 6 [Cucumis sativus]
 gi|115432853|gb|ABI97466.1| NADH-plastoquinone oxidoreductase subunit 6 [Cucumis sativus]
 gi|115498355|gb|ABI98797.1| NADH-plastoquinone oxidoreductase subunit 6 [Cucumis sativus]
          Length = 176

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 22/160 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  V+   N IYS FSL    V+ +  ++L  A+FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIYVGAINVLIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---- 128
            +           K   L +   G+     +VC S F   M    +     +++      
Sbjct: 80  FMK-----GSEYSKDFNLWTVGNGV---TFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQ 131

Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                  +N + IG  L T +  P E+   ILL ++IGAI
Sbjct: 132 ILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAI 171


>gi|326909443|ref|YP_004327714.1| NADH dehydrogenase subunit 6 [Hevea brasiliensis]
 gi|308523557|gb|ADO33607.1| NADH dehydrogenase subunit 6 [Hevea brasiliensis]
          Length = 176

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M +       D
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136
            ++             S F+ ++    I+  +++         ++++ +   +N + IG 
Sbjct: 90  FNLWTVGSGVTSLVCTSIFVSLIT---ILPDTSWYGIIWTTRTNQIIEQDLISNGQQIGI 146

Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161
            L T +  P E    ILL+++IGAI
Sbjct: 147 HLSTDFFLPFEFISIILLVALIGAI 171


>gi|318077268|ref|ZP_07984600.1| NADH dehydrogenase I chain J [Streptomyces sp. SA3_actF]
          Length = 267

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F LF  +   ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG+V+
Sbjct: 28  FVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 87

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR 90
           V  LF +M+    I  ++    R
Sbjct: 88  VLLLFGLMLTRAPIGRSDDADSR 110


>gi|318056641|ref|ZP_07975364.1| NADH dehydrogenase I chain J [Streptomyces sp. SA3_actG]
          Length = 267

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F LF  +   ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG+V+
Sbjct: 28  FVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 87

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR 90
           V  LF +M+    I  ++    R
Sbjct: 88  VLLLFGLMLTRAPIGRSDDADSR 110


>gi|153004150|ref|YP_001378475.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027723|gb|ABS25491.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. Fw109-5]
          Length = 208

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 13/150 (8%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           RN +YS   L+ A + A GL++ L A+FVA+  L+VY+G V+V  LF +M+     +V  
Sbjct: 67  RNILYSALGLLMALLGAGGLYVFLSADFVAITQLLVYIGGVLVLVLFAVMLTSRITDVKV 126

Query: 86  PRKKRGFLGS---FFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142
                G +G    F         +   + + V   +              +IG    T++
Sbjct: 127 SNTSFGPVGGALLFVAAAPVLLAVALLTPWAVRIPDA-------LAPTTASIGNAFLTRW 179

Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
             P E++  +LL +++GA+V+    R+++K
Sbjct: 180 LLPFEVASMVLLATLVGAVVI---ARKELK 206


>gi|302521255|ref|ZP_07273597.1| NADH dehydrogenase subunit I J [Streptomyces sp. SPB78]
 gi|302430150|gb|EFL01966.1| NADH dehydrogenase subunit I J [Streptomyces sp. SPB78]
          Length = 263

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F LF  +   ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG+V+
Sbjct: 24  FVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 83

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR 90
           V  LF +M+    I  ++    R
Sbjct: 84  VLLLFGLMLTRAPIGRSDDADSR 106


>gi|94265857|ref|ZP_01289587.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta
           proteobacterium MLMS-1]
 gi|94269627|ref|ZP_01291516.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta
           proteobacterium MLMS-1]
 gi|93451145|gb|EAT02072.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta
           proteobacterium MLMS-1]
 gi|93453593|gb|EAT03989.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta
           proteobacterium MLMS-1]
          Length = 173

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 11/170 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + F+ F  + I  + +     N I +V  L    V  AG++  LG+ F+A++ +++Y
Sbjct: 10  LAGVVFFGFILLIIFGALVATNAVNLIRAVCGLALCLVGVAGIYYFLGSPFLALMQILIY 69

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVCASNFMVFSAE 118
            GAV V  +F +M+       AEP   + F  S  +      L   L+      + F   
Sbjct: 70  AGAVCVAIVFAVML-------AEPAAVQRFHRSHPLAGPGAALTGALMAWGLAALAFKTS 122

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                       +E +G+ + T +    E+   ILLL+++G++VL  R R
Sbjct: 123 WPSPPQRLNDGALEEVGRAMMTTFVVSFELISLILLLAIVGSLVLARRGR 172


>gi|32480898|ref|NP_862808.1| NADH dehydrogenase subunit 6 [Calycanthus floridus var. glaucus]
 gi|75233676|sp|Q7YJT1|NU6C_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|32399434|emb|CAD28775.1| NADH dehydrogenase ND6 subunit [Calycanthus floridus var. glaucus]
          Length = 176

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +   +   + FVA   L++YVGAV V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
                  L +   G+ +   +VC S  ++FS    +    + G                +
Sbjct: 85  EYSNDFHLWTVGDGVTS---LVCTS--ILFSLITTIWNTSWYGIIWTTRSNQIIEQDLTS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           NV+ IG  L T +  P E+   ILL ++IGAI +
Sbjct: 140 NVQQIGIRLATDFYLPFELISIILLAALIGAIAM 173


>gi|148925718|ref|ZP_01809406.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205355585|ref|ZP_03222355.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|145845728|gb|EDK22819.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346362|gb|EDZ32995.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 172

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  + F +M  D  
Sbjct: 20  IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79

Query: 81  IEVAEPRKKRGFLGSFF-IGILAAELIVC---ASNFMVFSAEGELSRLVFKGNNVENIGK 136
            E  E  K +    SFF + +L+A L++       +   S +  L+       N + +  
Sbjct: 80  KEFKEQLKAK---KSFFTLVVLSAILLLTMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            ++++Y    E    +LL++++ AI   L H+   K + 
Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIT--LTHKELTKEKQ 172


>gi|126792870|gb|ABO27287.1| NADH dehydrogenase subunit 6 [Orthopsittaca manilata]
          Length = 170

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 13/120 (10%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G ++V F++ + 
Sbjct: 13  VLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135
           +       A+P  +    G + +      L+     F+V+  +G      FK + V+++G
Sbjct: 73  L------AADPFPQA--WGGWQVAGYVLGLVPVGVGFVVWGWDGG-----FKVDTVDSVG 119


>gi|300711695|ref|YP_003737509.1| NADH dehydrogenase subunit J [Halalkalicoccus jeotgali B3]
 gi|299125378|gb|ADJ15717.1| NADH dehydrogenase subunit J [Halalkalicoccus jeotgali B3]
          Length = 102

 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          MV+++  F LF+ + + SS  VV VR+  ++   L  A ++ A  ++ L AEF+A + ++
Sbjct: 1  MVLETAAFVLFAGVTLASSLGVVLVRDVWHAALLLGVALLSVAIHYVTLTAEFLAAVQIL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91
          VYVG V++   F +M+   D  V   R  +G
Sbjct: 61 VYVGGVLILITFAVMLTH-DETVEADRGAQG 90


>gi|311896695|dbj|BAJ29103.1| putative NADH-quinone oxidoreductase subunit J [Kitasatospora setae
           KM-6054]
          Length = 236

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VT R  +++   L+ A    A  FLLL AEFVA + ++VY+G+VIV  LF +M+    I
Sbjct: 43  VTTRQLVHAALWLVVALGGLAVEFLLLTAEFVAWVQVLVYLGSVIVLVLFGLMLTRAPI 101


>gi|57168325|ref|ZP_00367459.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
           [Campylobacter coli RM2228]
 gi|57020133|gb|EAL56807.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
           [Campylobacter coli RM2228]
          Length = 171

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 6/98 (6%)

Query: 13  FMAIISSFLVVTV--RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           F  ++  F +V V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  +
Sbjct: 10  FSVVVLGFFLVAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLY 69

Query: 71  LFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIV 107
            F +M  D   E  E  R K+ F   F + IL+A L++
Sbjct: 70  SFAMMFFDSSKEFKEKLRAKKSF---FLLVILSAVLLL 104


>gi|313199752|ref|YP_004021366.1| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao]
 gi|309321316|gb|ADO64859.1| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao]
 gi|328924831|gb|ADO64942.2| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao]
          Length = 176

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 22/150 (14%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCAS---NFMVFSAEGELSRLVFKG-----------NNV 131
              K   L +   G+ +   +VC S   + +    +     +++             +N 
Sbjct: 85  EYYKDFNLWTIGNGVTS---LVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNS 141

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           + IG  L T +  P E    ILL+++IGAI
Sbjct: 142 QQIGIHLATDFFLPFEFISIILLVALIGAI 171


>gi|114804316|ref|YP_762313.1| NADH-plastoquinone oxidoreductase subunit 6 [Morus indica]
 gi|122166758|sp|Q09WW5|NU6C_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|78100368|gb|ABB21009.1| NADH-plastoquinone oxidoreductase subunit 6 [Morus indica]
          Length = 176

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  + L++L  + FVA   L++YVGA+ V  +F +M ++     +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLLYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN----GSE 85

Query: 86  PRKKRGF--LGSFFIGILAAELIVCASNF-MVFSAEGELSR----LVFKGN--------- 129
             K      +G+ F       L++C S F ++ +   + S        + N         
Sbjct: 86  YYKDFNLWTVGNGF------TLLICTSIFGLLITTITDTSWYGIIWTTRSNQIIEHDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           N + IG  L T +  P E    ILL ++IGAI +
Sbjct: 140 NSQQIGIHLSTDFFLPFEFISIILLAALIGAITV 173


>gi|289066874|ref|YP_003434392.1| NADH-plastoquinone oxidoreductase subunit 6 [Vigna radiata]
 gi|259020061|gb|ACV90259.1| NADH-plastoquinone oxidoreductase subunit 6 [Vigna radiata]
          Length = 176

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 22/160 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV   NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVFFTNPIFSAFSLGLVLVCVSLFYILSNSHFVAASQLLIYVGAINVLIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-----VFSAEGELSRLVFKGNN 130
            ++          +   + +   GI    L+VC S F+     +            + N 
Sbjct: 80  FMN-----GSDYYQNFRVWTVGDGI---TLMVCTSIFLSQITTILDTSWHGIIWTTRPNQ 131

Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           +         + IG  L T +  P E+   ILL+++IGAI
Sbjct: 132 ILEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|290958202|ref|YP_003489384.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces scabiei 87.22]
 gi|260647728|emb|CBG70833.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces scabiei 87.22]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   +   ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 37  FLLVGLVTFGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 96

Query: 68  VFFLFIIMMLDIDI 81
           V  LF +M+    I
Sbjct: 97  VLLLFGLMLTKAPI 110


>gi|239943532|ref|ZP_04695469.1| putative NADH dehydrogenase chain J [Streptomyces roseosporus
          NRRL 15998]
 gi|239989986|ref|ZP_04710650.1| putative NADH dehydrogenase chain J [Streptomyces roseosporus
          NRRL 11379]
 gi|291446999|ref|ZP_06586389.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces roseosporus NRRL
          15998]
 gi|291349946|gb|EFE76850.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces roseosporus NRRL
          15998]
          Length = 224

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L     + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG+++
Sbjct: 29 FLLVGLATLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSIV 88

Query: 68 VFFLFIIMM 76
          V  LF +M+
Sbjct: 89 VLLLFGLML 97


>gi|289571365|ref|ZP_06451592.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           T17]
 gi|289545119|gb|EFD48767.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           T17]
          Length = 119

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ S +A++ +  VV   N +YS   L    +  A  ++   A F+ ++ +VVY 
Sbjct: 17  EAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS 95
           GAV++ FLF++M++ +D   AE  +     GS
Sbjct: 77  GAVMMLFLFVLMLIGVD--SAESTEGDAAAGS 106


>gi|240266527|ref|YP_002970874.1| NADH dehydrogenase subunit 6 [Arthroderma obtusum]
 gi|237781129|gb|ACR19620.1| NADH dehydrogenase subunit 6 [Arthroderma obtusum]
          Length = 202

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          + + ++II     +  +NP+ SV  LI  F   +   +L+G  F+ +  L+VY+GAV + 
Sbjct: 22 ILALISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLILIGLTFIGISYLLVYIGAVSIL 81

Query: 70 FLFIIMMLDIDIE 82
          FLFI+M+++I I 
Sbjct: 82 FLFILMLINIRIS 94


>gi|11466053|ref|NP_038212.1| NADH dehydrogenase subunit 6 [Pichia canadensis]
 gi|22654266|sp|P48927|NU6M_PICCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|11036341|dbj|BAA06567.2| NADH dehydrogenase subunit 6 [Pichia canadensis]
          Length = 207

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
          V NP+YS+  LI  F+N A    L+G   ++++ ++VY+GA+ V FLFI+
Sbjct: 34 VSNPMYSILYLIILFINIAIYLYLIGISIMSLLYILVYIGAIAVLFLFIL 83


>gi|122894040|ref|YP_001004236.1| NADH-plastoquinone oxidoreductase subunit 6 [Ranunculus macranthus]
 gi|221272343|sp|A1XGT8|NU6C_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|85540854|gb|ABC70806.1| NADH-plastoquinone oxidoreductase subunit 6 [Ranunculus macranthus]
          Length = 177

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML---- 77
           VV + NPI+S FSL    V  +  +    + FVA   L++YVGA+ V  +F +M +    
Sbjct: 26  VVLLTNPIFSAFSLGLVLVCTSLFYTPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSE 85

Query: 78  ---DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVE 132
              D  +             S F+ ++     +  +++         ++++ +   NN +
Sbjct: 86  YYSDFHLWTVGDGVTSLVCTSIFVSLITT---IPDTSWYGIVWTTRSNQIIEQDLINNSQ 142

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161
            IG  L T +  P E+   ILL+++IGAI
Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|91208953|ref|YP_538987.1| NADH dehydrogenase subunit 6 [Gossypium hirsutum]
 gi|122201415|sp|Q2L958|NU6C_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|85687467|gb|ABC73679.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium hirsutum]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M +       D
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
            ++             S  + ++   L       +  +   ++       N+ + IG  L
Sbjct: 90  FNLWTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNS-QQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAI 161
            T +  P E    ILL+++IGAI
Sbjct: 149 ATDFFLPFEFISIILLVALIGAI 171


>gi|78042971|ref|YP_360251.1| proton-translocating NADH-quinone oxidoreductase subunit J
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995086|gb|ABB13985.1| proton-translocating NADH-quinone oxidoreductase, J subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 169

 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + +F+ I S+  VV +RN ++SV  L   FV  A  +L+L A F+A + LVVY GAV 
Sbjct: 9   FAIVAFLLIFSALGVVFMRNIVHSVLFLAATFVLMAVTYLMLDAGFLAGVQLVVYAGAVS 68

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVF 126
           +  +F +M+     + ++  +   F      G + + L+    +++V      L+ R + 
Sbjct: 69  IMVVFAVML----TKRSDLHETNLFNRLTIPGAIISFLVFIGLSWVVVKTPWNLAERPLV 124

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
               +  +  +++ ++  P E++  +LL+++IGAI+L L    ++K Q 
Sbjct: 125 DPMAINKLADLMFGKFVIPFEVAAVLLLVALIGAIILAL----EVKPQK 169


>gi|224026047|ref|ZP_03644413.1| hypothetical protein BACCOPRO_02800 [Bacteroides coprophilus DSM
           18228]
 gi|224019283|gb|EEF77281.1| hypothetical protein BACCOPRO_02800 [Bacteroides coprophilus DSM
           18228]
          Length = 171

 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 14/176 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +Q + FY+ +    + S L VT    + +   L+F       ++ +LG  F+  + L+
Sbjct: 3   ITLQEIVFYVVAAAIAVCSVLAVTTGKILRAATYLLFVLFGTGAIYGILGYTFLGAVQLM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   D ++     +   +      ++ A L++    F+V +  G 
Sbjct: 63  VYAGGIVVLYVFSILLTQSDKDMKYRMNRAKLISVLLTTLVGAALVL----FLVLT-NGF 117

Query: 121 LSRLVFKGNN--VENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              ++ +G    V  IG  L      Q+  P E+   +LL  MIG I++    R+D
Sbjct: 118 ALNMIPQGVELPVREIGLSLTGTGKYQFILPFEVVSVLLLACMIGGILI---ARKD 170


>gi|262211481|gb|ACY35570.1| NADH dehydrogenase subunit 6 [Polytomella sp. SAG 63-10]
          Length = 145

 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          VV   +P  ++   I  ++N   +   LG +F+A+I  +VYVGA+ V FLF++MM+ I +
Sbjct: 18 VVLTSSPFMALMYSILLYLNVQTILWSLGYDFMALIYALVYVGALAVLFLFVVMMVRIQV 77

Query: 82 EVAEPRKKRGFLG 94
               +  +  L 
Sbjct: 78 STLSTKTVQAVLS 90


>gi|74310557|ref|YP_313641.1| NADH dehydrogenase subunit 6 [Epidermophyton floccosum]
 gi|58429685|gb|AAW78247.1| NADH dehydrogenase subunit 6 [Epidermophyton floccosum]
          Length = 199

 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82
          +  +NP+ SV  LI  F   +   +L+G  F+ +  L+VY+GAV + FLFI+M+++I I 
Sbjct: 35 IVCKNPVISVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSILFLFILMLINIRIS 94


>gi|21228587|ref|NP_634509.1| NADH dehydrogenase subunit J [Methanosarcina mazei Go1]
 gi|20907081|gb|AAM32181.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
          Length = 96

 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          +++  F L + + +  +  VV  ++ + +  +LI      AGL++LL A+F+ +I ++VY
Sbjct: 11 LETAVFGLLALVTVFFAIFVVIAKDVVRAGLALIMCMFGVAGLYILLNAQFLGVIQVLVY 70

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89
          +GA+ V  LF +M+   +I    PR  
Sbjct: 71 IGAIGVLILFAVMLTKREIG-GGPRAN 96


>gi|284034102|ref|YP_003384033.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Kribbella
          flavida DSM 17836]
 gi|283813395|gb|ADB35234.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kribbella
          flavida DSM 17836]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          T R  +++   L+ A    AG F  L AEFVA++ ++VYVGA++V  LF +M+
Sbjct: 22 TSRRIVHAALWLVVALGAVAGCFGALHAEFVALVQILVYVGAIVVLVLFALML 74


>gi|302559056|ref|ZP_07311398.1| NADH dehydrogenase subunit [Streptomyces griseoflavus Tu4000]
 gi|302476674|gb|EFL39767.1| NADH dehydrogenase subunit [Streptomyces griseoflavus Tu4000]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 41/69 (59%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   +   ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 34  FLLVGLVTFGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 93

Query: 68  VFFLFIIMM 76
           V  LF +M+
Sbjct: 94  VLLLFGLML 102


>gi|294496243|ref|YP_003542736.1| hypothetical protein Mmah_1595 [Methanohalophilus mahii DSM 5219]
 gi|292667242|gb|ADE37091.1| hypothetical protein Mmah_1595 [Methanohalophilus mahii DSM 5219]
          Length = 90

 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 46/73 (63%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          ++L F++ + + I  S   V  ++ + +  +L+F+    AGLF+ L A+F+ ++ ++VYV
Sbjct: 6  EALVFFILAAVVIFFSLAAVLSKDIVRAALALVFSMFTVAGLFITLNAQFLGVVQILVYV 65

Query: 64 GAVIVFFLFIIMM 76
          GA+ V  LF +M+
Sbjct: 66 GAIGVLILFAVML 78


>gi|60117148|ref|YP_209611.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum]
 gi|51339712|gb|AAU00626.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM-MLDIDIEVAE 85
          NPIYSV +LI  F   A + ++L  EF+A I ++V VGAV V FLFIIM +    +E+ +
Sbjct: 25 NPIYSVLNLIIIFWCYACILIILDMEFLACIFILVNVGAVAVLFLFIIMMININIVEIKD 84

Query: 86 PRKK 89
            KK
Sbjct: 85 NLKK 88


>gi|283780915|ref|YP_003371670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula
          staleyi DSM 6068]
 gi|283439368|gb|ADB17810.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula
          staleyi DSM 6068]
          Length = 370

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           S  F LF+ +A   +  V    N +   F L  +    +GLF L GAEFV  + L++YV
Sbjct: 25 HSTLFVLFALLACGFAIAVAASSNIVRMAFYLTLSLGATSGLFFLAGAEFVGAMQLMIYV 84

Query: 64 GAVIVFFLFIIMM 76
          G  +V  +F +M+
Sbjct: 85 GGTLVLLIFGVML 97


>gi|240266722|ref|YP_002970902.1| NADH dehydrogenase subunit 6 [Microsporum canis]
 gi|237781138|gb|ACR19628.1| NADH dehydrogenase subunit 6 [Arthroderma otae]
          Length = 201

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          + + ++II     +  +NP+ SV  LI  F   +   +L+G  F+ +  L+VY+GAV + 
Sbjct: 21 IIALISIILGIYTIISKNPVVSVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSIL 80

Query: 70 FLFIIMMLDIDIE 82
          FLFI+M+++I I 
Sbjct: 81 FLFILMLINIRIS 93


>gi|302536207|ref|ZP_07288549.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sp. C]
 gi|302445102|gb|EFL16918.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sp. C]
          Length = 212

 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L     + ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++Y+G+V+
Sbjct: 32  FLLVGLATLGAAVITVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYLGSVV 91

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V  LF +M+    I     R      G+ ++ +  A     A  ++V  A    + +   
Sbjct: 92  VLLLFGLMLTKAPIG----RSPDADSGNRWVALGVAGAAGAALVWVVADAF-RTTWIDLD 146

Query: 128 G---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           G    + +  G++L+  +  P E    +LL ++IGAIVL  R+
Sbjct: 147 GPAQGSTKVSGEILFQHWVLPFEALSVLLLAALIGAIVLSRRN 189


>gi|21689547|gb|AAL65277.1| NADH dehydrogenase subunit 6 [Polytomella parva]
          Length = 145

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          VV   +P  ++   I  ++N   +   LG +F+A+I  +VYVGA+ V FLF++MM+ I +
Sbjct: 18 VVLTSSPFMALMYSILLYLNVQTILWSLGYDFMALIYALVYVGALAVLFLFVVMMVRIQV 77

Query: 82 EVAEPRKKRGFLG 94
               +  +  L 
Sbjct: 78 STLSTKTIQSVLS 90


>gi|297159544|gb|ADI09256.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces bingchenggensis
          BCW-1]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L + + +  + + VT +  +++   L+      A  FLLL AEF+A + +++YVG+V+
Sbjct: 24 FLLVAVVTLGGAVVTVTTKQLVHAALWLVVTLGGLAVEFLLLTAEFIAWVQVLIYVGSVV 83

Query: 68 VFFLFIIMMLDIDI 81
          V  LF +M+    I
Sbjct: 84 VLILFGLMLTKAPI 97


>gi|269128604|ref|YP_003301974.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Thermomonospora curvata DSM 43183]
 gi|268313562|gb|ACY99936.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermomonospora curvata DSM 43183]
          Length = 308

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 102/182 (56%), Gaps = 8/182 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F+L + +++ ++  +V +R  ++S   L    ++ A L+ +  A F+A + ++VY 
Sbjct: 22  EPVVFWLLAVVSVAAALGMVFLRKAVHSALMLAVVMLSLAVLYAVQDAPFLAFVQVIVYT 81

Query: 64  GAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCA-SNFMVFSAEG 119
           GAV++ FLF++M++ +   D  V   R +R  + +   G+  A L++    N  +  + G
Sbjct: 82  GAVLMLFLFVLMLVGVSSTDSLVETIRGQR--IWAAIAGLGFAVLVISGLGNAALSDSMG 139

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK--RQDIS 177
             +     G NV+ + ++L+T+Y +  E++  +L+ + +GA+VL  R R   K  ++++S
Sbjct: 140 LAAANAEAGGNVQGLARLLFTKYVFAFEVTSALLITAALGAMVLAHRERTSPKPTQKELS 199

Query: 178 KQ 179
           K+
Sbjct: 200 KR 201


>gi|297201680|ref|ZP_06919077.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sviceus ATCC
          29083]
 gi|197710947|gb|EDY54981.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sviceus ATCC
          29083]
          Length = 248

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L   +   ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 20 FLLVGLVTFGAAIVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 79

Query: 68 VFFLFIIMMLDIDI 81
          V  LF +M+    I
Sbjct: 80 VLLLFGLMLTRAPI 93


>gi|290489846|gb|ADD31330.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Dillenia
           indica]
          Length = 176

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 26/152 (17%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIFSAFSLGLVLVCISLFYISANSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
              K   L +   GI +   +VC S F+  S    +    + G                +
Sbjct: 85  EYYKDFHLWTIGDGISS---LVCTSIFV--SLITTIPDTSWYGIIWTTRSNQIIEQDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           N + IG  L T +  P E+   ILL+++IGAI
Sbjct: 140 NGQQIGIHLSTDFVLPFELISIILLVALIGAI 171


>gi|29831429|ref|NP_826063.1| NADH dehydrogenase I chain J [Streptomyces avermitilis MA-4680]
 gi|29608544|dbj|BAC72598.1| putative NADH dehydrogenase I chain J (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   +   ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG+V+
Sbjct: 29  FLLVGLVTFGAAIVTVTTKQLVHAALWLVATLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 88

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V  LF +M+    I  +          +  + + +A  +V    ++V  A    + L   
Sbjct: 89  VLLLFGLMLTKAPIGRSPDADSGNRWAALTVAVASAATLV----WVVVDAF-RTTWLDLN 143

Query: 128 G---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G    +    G  L+  +  P E    +LL +++GAIVL  + + D
Sbjct: 144 GAAAGSTAVTGASLFQNWVLPFEALSVLLLAALVGAIVLSRKAKAD 189


>gi|305432366|ref|ZP_07401528.1| NADH-quinone oxidoreductase subunit J [Campylobacter coli JV20]
 gi|304444405|gb|EFM37056.1| NADH-quinone oxidoreductase subunit J [Campylobacter coli JV20]
          Length = 171

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 13  FMAIISSFLVVTV--RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           F  ++  F +V V   N +YS+ +L    V  +G + LL AEF+ +I ++VY GAV+  +
Sbjct: 10  FSVVVLGFFLVAVLSTNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLY 69

Query: 71  LFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIV 107
            F +M  D   E  E  R K+ F   F + IL+A L++
Sbjct: 70  SFAMMFFDSSKEFKEKLRAKKSF---FLLVILSAVLLL 104


>gi|224483634|gb|ACN51358.1| NADH dehydrogenase subunit 6 [Saxicola torquata axillaris]
 gi|224483636|gb|ACN51359.1| NADH dehydrogenase subunit 6 [Saxicola torquata axillaris]
          Length = 172

 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 13/133 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ + F    F  ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MQFVLFLGVCF--VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F++ + +       AEP  +    G +  G++   L +C    + F   G + 
Sbjct: 60  LGGMLVVFVYSVSL------AAEPYPEA--WGDW--GVVGRGLGMCLVVMVGFMVGGGMD 109

Query: 123 RLVFKGNNVENIG 135
            LV  G  V+N G
Sbjct: 110 SLV-DGGTVDNGG 121


>gi|126792908|gb|ABO27310.1| NADH dehydrogenase subunit 6 [Nannopsittaca dachilleae]
          Length = 171

 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 17/149 (11%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++++ LV +  +P Y V  L+F  V   G F+ LGA F++++  +VY+G ++V F++ + 
Sbjct: 13  VLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVS 72

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135
           +       A+P  +  + G   +G +   ++  +   +V+   GE     F  N  +++G
Sbjct: 73  L------AADPFPQV-WXGWRVVGYILGLVLALSVGCVVWGWGGE-----FGVNTADSVG 120

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLM 164
            V + +    L+  G  L  S+ G + LM
Sbjct: 121 -VFFVR----LDFGGVALFYSLGGGLFLM 144


>gi|290489856|gb|ADD31335.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Nelumbo
           nucifera]
          Length = 176

 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
                  L +   G+ +   +VC S F  FS    +    + G                +
Sbjct: 85  EYYNDFHLWTIGDGVTS---LVCTSIF--FSLITTILDTSWYGIIWTTRSNQIIEQDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           N + IG  L T +  P E+   ILL+++IGAI +
Sbjct: 140 NGQQIGIHLSTDFFLPFELISIILLVALIGAIAM 173


>gi|317123854|ref|YP_004097966.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043]
 gi|315587942|gb|ADU47239.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043]
          Length = 304

 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 91/174 (52%), Gaps = 11/174 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +S FF++ + +A+ ++  +V  R  +++   +          +L+  A+F+ ++ + VY 
Sbjct: 6   ESAFFWVLAPLAVAAALALVFARKAVHAAIGMAITMTILGVFYLMQKADFLGVVQVFVYT 65

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF------LGSFFIGILAAELIVCASNFMVFSA 117
           GAV++ FLF+IM++ +D   +     +G       L    IG+L++   + +++F   + 
Sbjct: 66  GAVMMLFLFVIMLVGVDSSDSLVETIKGHRWLSIILAVGLIGLLSS--TIGSASFDEATV 123

Query: 118 EGELSRLV---FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           +  + +L     +  N+  + ++++ QY +  E++  +L+ + + A+VL  R R
Sbjct: 124 QSGIDKLEASNAQTGNITGMAELIFGQYVWIFEVTSALLITAALAAMVLAHRER 177


>gi|110227131|ref|YP_665609.1| NADH dehydrogenase subunit 6 [Populus alba]
 gi|134093259|ref|YP_001109560.1| NADH dehydrogenase subunit 6 [Populus trichocarpa]
 gi|122237031|sp|Q14FA5|NU6C_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272342|sp|A4GYW9|NU6C_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|109945569|dbj|BAE97257.1| NADH dehydrogenase subunit 6 [Populus alba]
 gi|133712121|gb|ABO36764.1| NADH-plastoquinone oxidoreductase chain 6 [Populus trichocarpa]
          Length = 176

 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M +       D
Sbjct: 30  TNPIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136
            ++             S F+ ++    I+  + +         ++++ +   +N + IG 
Sbjct: 90  FNLWTVGNGLTSLICTSLFVLLIT---IISNTTWYGIIWTTRANQIIEQDLVSNGQQIGI 146

Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161
            L T +  P E    ILL+++IGAI
Sbjct: 147 HLSTDFFLPFEFISIILLVALIGAI 171


>gi|290489854|gb|ADD31334.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Meliosma aff.
           cuneifolia Moore 333]
          Length = 176

 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPI+S FSL    V  +   +   + FVA   L++YVGA+ V  LF +M +       D
Sbjct: 30  TNPIFSAFSLGLVLVCISLFHIPSNSHFVAAAQLLIYVGAINVLILFAVMFMSGSEYYND 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136
             +             S F+ ++     +  +++         ++++ +   NN + IG 
Sbjct: 90  FQLWTVGDGVTSLVCTSIFVSLITT---IPDTSWYGIIWTTRSNQIIEQDLINNSQQIGI 146

Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161
            L T +  P E+   ILL+++IGAI
Sbjct: 147 HLSTDFFLPFELISIILLVALIGAI 171


>gi|48478478|ref|YP_024184.1| NADH dehydrogenase subunit J [Picrophilus torridus DSM 9790]
 gi|48431126|gb|AAT43991.1| NADH-quinone oxidoreductase chain J [Picrophilus torridus DSM
          9790]
          Length = 84

 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 44/69 (63%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F++F+ + +I SF+V++ +  I+S   L+   +  +GLF+ LG  FV  + L+VY GA++
Sbjct: 8  FFIFAILLVILSFMVISSKKLIHSSIYLLIFLIIISGLFISLGLSFVGSVELLVYAGAIV 67

Query: 68 VFFLFIIMM 76
             +F +M+
Sbjct: 68 TLLVFTLML 76


>gi|297570905|ref|YP_003696679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Arcanobacterium haemolyticum DSM 20595]
 gi|296931252|gb|ADH92060.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Arcanobacterium haemolyticum DSM 20595]
          Length = 330

 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 4/75 (5%)

Query: 10 LFSFMAI----ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          LFS  A+    ++ F ++  R  + +  S+I   V  A L+  L A F+ ++ +VVY GA
Sbjct: 15 LFSVTAVGMVALAIFGLLITRKAVLTTLSVIGVMVGFAVLYTALEAPFMGVVQVVVYTGA 74

Query: 66 VIVFFLFIIMMLDID 80
          +++ FLF++M++ +D
Sbjct: 75 ILMMFLFVLMLIGVD 89


>gi|290489876|gb|ADD31345.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Liquidambar
           styraciflua]
          Length = 176

 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPI+S FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M +       D
Sbjct: 30  TNPIFSAFSLGLVLVCISLFYISSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSGYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136
           +++             S F+ ++     +  +++         ++++ +   +N + IG 
Sbjct: 90  LNLWTVGDGVTSMVCTSIFVSLITT---IPDTSWYGIIWTTRSNQIIEQDLISNSQQIGI 146

Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161
            L T +  P E+   ILL+++IGAI
Sbjct: 147 HLSTDFFLPFELISIILLVALIGAI 171


>gi|73658456|emb|CAI99038.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
          Length = 145

 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
          NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++
Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN 82


>gi|73658454|emb|CAI99036.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
          Length = 145

 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
          NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++
Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN 82


>gi|260887653|ref|ZP_05898916.1| NADH dehydrogenase I, J subunit [Selenomonas sputigena ATCC 35185]
 gi|330838012|ref|YP_004412592.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           sputigena ATCC 35185]
 gi|260862669|gb|EEX77169.1| NADH dehydrogenase I, J subunit [Selenomonas sputigena ATCC 35185]
 gi|329745776|gb|AEB99132.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           sputigena ATCC 35185]
          Length = 167

 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 16/162 (9%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + + +  +  VV  +  +++   L   F+  A L+  LGA+F+    L++Y G V 
Sbjct: 10  FYLLAAVTLAGALGVVLAKKLVHAALLLTVTFIGIACLYFQLGADFLGAAQLMIYAGGVA 69

Query: 68  VFFLFIIMML-DIDIEVAEPRKKRGFLGS-----FFIGILAAELIVCASNFMVFSAEGEL 121
           V  +  +M+      E   P   R F        FF  + +A  +   +  M   A    
Sbjct: 70  VLIVLGVMLTRHTPGEETSPDNARWFAAPVAAALFFAVVFSAVYVTPFAEVMEAPA---- 125

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                 GN++E +  ++  +Y    E++  +LL +++GAIVL
Sbjct: 126 ------GNSIEKLADLMLGEYVMTFELAAALLLAALVGAIVL 161


>gi|73670844|ref|YP_306859.1| NADH dehydrogenase subunit J [Methanosarcina barkeri str. Fusaro]
 gi|72398006|gb|AAZ72279.1| F420H2 dehydrogenase subunit J [Methanosarcina barkeri str.
          Fusaro]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F++ +   +  +  VVT ++ + +  +LI      A L++LL A+F+ +I ++VY+GA+ 
Sbjct: 16 FWVLAISTVFFAVFVVTAKDIVRAGLALIMCMFGIAALYILLNAQFLGIIQVLVYIGAIG 75

Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89
          V  LF +M+   +I   EP + 
Sbjct: 76 VLILFAVMLTKHEIG-GEPGED 96


>gi|149390496|ref|YP_001294324.1| NADH-plastoquinone oxidoreductase subunit 6 [Illicium oligandrum]
 gi|221272326|sp|A6MMZ8|NU6C_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|147917449|gb|ABQ52573.1| NADH-plastoquinone oxidoreductase subunit 6 [Illicium oligandrum]
          Length = 177

 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NP+YS FSL    V  +   +   + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPVYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAINVLIVFAVMFMN------- 82

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
             +   +   + +G     LI C S  ++FS    +    + G                +
Sbjct: 83  GSEYYNYFHLWTVGDGVTSLI-CTS--ILFSLIKTILDTSWYGIIWTTRSNQIIEQDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           NV+ IG  L T +  P E+   ILL++++GAI +
Sbjct: 140 NVQQIGIHLSTDFYLPFELISIILLVALVGAIAM 173


>gi|302543402|ref|ZP_07295744.1| putative NADH dehydrogenase subunit [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302461020|gb|EFL24113.1| putative NADH dehydrogenase subunit [Streptomyces himastatinicus
          ATCC 53653]
          Length = 186

 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++YVG+V+V  LF +M+ 
Sbjct: 34 AAVITVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVGSVVVLLLFGLMLT 93

Query: 78 DIDI 81
             I
Sbjct: 94 KAPI 97


>gi|49574628|ref|NP_848113.2| NADH dehydrogenase subunit 6 [Adiantum capillus-veneris]
 gi|68565793|sp|Q85FH2|NU6C_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|48476042|gb|AAP29444.2| NADH dehydrogenase subunit 6 [Adiantum capillus-veneris]
          Length = 197

 Score = 41.2 bits (95), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++ S   V + N + S FSL   F   + L+ +L A+FVA   L+VYVGA+ V  +F +M
Sbjct: 20  LLGSLGAVLLVNTVNSAFSLGLVFTCISLLYFVLNADFVAAAQLLVYVGAINVLTVFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFL---GSFFIGILAAELIVCASNFMVFS--AEGELSRLVFKGNN 130
           + D         +  G++   G+  I       ++  + +   S   +  +S     G+N
Sbjct: 80  ITDEPAGSETTARGIGYIITAGTCTILFSILSFVIHNTKWSDLSLIPQSGISTSGTLGSN 139

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           V+ +G  L  ++  P E+   +LL +++GAI L
Sbjct: 140 VQQLGYKLLGEFVIPFELLSILLLAALVGAINL 172


>gi|146304648|ref|YP_001191964.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Metallosphaera sedula DSM 5348]
 gi|145702898|gb|ABP96040.1| NADH dehydrogenase subunit J [Metallosphaera sedula DSM 5348]
          Length = 166

 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT---LVVYVG 64
           F+LFS  A+ ++  +V  +N  YS  SL F  ++ A L   L  E  ++ +   L++YVG
Sbjct: 13  FFLFSIFALATALFIVNSKNVFYSAVSLAFLGISVAVLIADLDPEAYSLYSAFHLLLYVG 72

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSR 123
           A +VF    ++M    +EV E R              A  L+   + F V   +   ++ 
Sbjct: 73  ATVVFLSISLVMFR-GLEVKEIRTPWA---------PAMALLSAVAFFAVLVLSTSSITP 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +  +  N+  +G+ + +QY +P  +    LL +MI A+ L    RRD
Sbjct: 123 VQIQPLNLAVVGEKIVSQYWFPAVVLVIALLTTMIEALSL---ARRD 166


>gi|313184044|ref|YP_004021201.1| NADH-plastoquinone oxidoreductase subunit 6 [Castanea mollissima]
 gi|290489882|gb|ADD31348.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Quercus nigra]
 gi|309321571|gb|ADO65111.1| NADH-plastoquinone oxidoreductase subunit 6 [Castanea mollissima]
          Length = 176

 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 26/156 (16%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + N IYS FSL    V  +  ++L  +  VA   L++YVGA+ V  +F +M ++   
Sbjct: 26  VVLLTNTIYSAFSLGLVLVCISLFYILSNSHLVAAAQLLIYVGAINVLIIFAVMFMN--- 82

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------------- 128
             +E  K    L  + +G     L++C   F +  A   +S   + G             
Sbjct: 83  -GSEYYKD---LNLWTVGD-GVTLLICTILFCLLMA--TISDTSWYGIIWTTRSNQIIEQ 135

Query: 129 ---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +N + IG  L T +  P E+   ILL ++IGAI
Sbjct: 136 DLISNSQQIGIHLSTDFFLPFELISIILLAALIGAI 171


>gi|114329800|ref|YP_740618.1| NADH-plastoquinone oxidoreductase subunit 6 [Platanus occidentalis]
 gi|122165990|sp|Q09FZ3|NU6C_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|114054438|gb|ABI49832.1| NADH-plastoquinone oxidoreductase subunit 6 [Platanus occidentalis]
          Length = 176

 Score = 41.2 bits (95), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPIYS FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M +       D
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYND 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136
             +             S F+ ++    I   S + V       ++++ +   +N + IG 
Sbjct: 90  FHLWTVGDGVTSLLCTSIFVSLITT--IPDTSWYGVIWTTRS-NQIIEQDLISNGQQIGI 146

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVL 163
            L T +  P E+   ILL+++IGAI +
Sbjct: 147 HLSTDFFLPFELISIILLVALIGAIAM 173


>gi|312183561|gb|ADQ42350.1| NADH:ubiquinone oxidoreductase J [Methanosaeta harundinacea]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 11 FSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FS +A+I    S L V  RN ++S   L+ +F   A L++ L A FV +  ++VY+GAV 
Sbjct: 19 FSLLAVIILGLSILTVYSRNIVHSGLYLLGSFAAVAALYIFLNATFVGVAQVLVYIGAVG 78

Query: 68 VFFLFIIMM 76
          V  LF IM+
Sbjct: 79 VLILFAIML 87


>gi|316935777|ref|YP_004110759.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Rhodopseudomonas palustris DX-1]
 gi|315603491|gb|ADU46026.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodopseudomonas palustris DX-1]
          Length = 168

 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 8/142 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SL        A+IS+ L VT  N ++++  L+   +  A  F  LGA F A++ ++VY
Sbjct: 1   MSSLLAIYAGAFALISAALSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLILVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SAEGE 120
            GA++V F+F++M L +  E A  R++    G++ + +L + LI+    F  F  +A G+
Sbjct: 61  AGAIVVLFVFVVMTLPVSPE-AITRERALLRGAWPVPLLMSVLIIAPFVFGEFGLTAAGQ 119

Query: 121 LSRLVFKGNNVENIGKVLYTQY 142
            + +     + + +GK+L+  +
Sbjct: 120 PAPV-----SAQEVGKLLFGPW 136


>gi|310915125|emb|CBM41834.1| NADH dehydrogenase subunit 6 [Millerozyma farinosa]
          Length = 153

 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 16/152 (10%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           +SS L + +  P+ S+  LI  F + A      G   + M+ +++YVGA+ + FLF++ +
Sbjct: 7   LSSLLAMGMLTPVQSILCLIILFTSTAMCLYSQGFVLMGMLYMLMYVGAMAMLFLFMLSL 66

Query: 77  LDIDIEVAEPRKKRG----FLGSFFIGILAAELIVC---ASNFMVFSAEGELSRLVFKGN 129
           L +D     P+         L    + ++  +L+      S  M+   E   + LV  GN
Sbjct: 67  LKMD--APSPKGYHHVSPLLLTLMIVTLMPLDLLYSGMETSYGMMVEVENTYNELVVVGN 124

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                   LYT+YA  L ++G +L+LS++GAI
Sbjct: 125 Q-------LYTEYAMLLVMTGLMLMLSVMGAI 149


>gi|329944211|ref|ZP_08292470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328530941|gb|EGF57797.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 331

 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F + + + +     V+T +  + +  ++I   ++ A L+++  + F+ +  +VVY 
Sbjct: 30  EAIVFGVVALVTVACGIGVLTAKRAVTAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 89

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+   LF+IM++ +  +  EP    G +    + IL    +      +V+ A      
Sbjct: 90  GAVMTLVLFVIMLVGVGGD--EPVGAAGSVMRRPVLILLGLGLAGFLAAVVWRAALPTPA 147

Query: 124 LVFKGNNVEN--IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
            +  G       +   LY  +   +E++  +L+++ +GA  L L HR+ I+ +   +++ 
Sbjct: 148 GLKDGAKAAPDLLAVTLYNDHVVTMELTAILLIVAAVGA--LTLTHRQRIRARLSQRRVA 205

Query: 182 SN 183
           +N
Sbjct: 206 AN 207


>gi|320009162|gb|ADW04012.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Streptomyces flavogriseus ATCC 33331]
          Length = 223

 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L       ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++YVG+V+
Sbjct: 22 FLLVGLATFGAAVVTVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVGSVV 81

Query: 68 VFFLFIIMM 76
          V  LF +M+
Sbjct: 82 VLLLFGLML 90


>gi|15866262|gb|AAL10291.1| NADH dehydrogenase subunit 6 [Gracula religiosa intermedia]
          Length = 82

 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          I+    V +  +P Y V  L+ A V   G  + LG  FVA++ ++VY+G ++V F++ + 
Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKRG 91
          +       A+P  K G
Sbjct: 73 L------AADPYPKAG 82


>gi|229577807|ref|YP_002836143.1| NADH-plastoquinone oxidoreductase subunit 6 [Megaleranthis
           saniculifolia]
 gi|226933935|gb|ACO92068.1| NADH-plastoquinone oxidoreductase subunit 6 [Megaleranthis
           saniculifolia]
          Length = 177

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  +   +   + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIFSAFSLGLVLVCTSLFHIPSNSHFVAAAQLLIYVGAINVLIVFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
                  L +   G+ +   +VC S F+  S    +    + G                N
Sbjct: 85  EYYNDFHLWTVGDGVTS---LVCTSIFV--SLITTIPDTSWYGIIWTTRSNQILEQDLIN 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           N + IG  L T +  P E+   ILL+++IGAI +
Sbjct: 140 NGQQIGIHLSTDFFLPFELISIILLVALIGAIAM 173


>gi|149390319|ref|YP_001294150.1| NADH-plastoquinone oxidoreductase subunit 6 [Chloranthus spicatus]
 gi|221272316|sp|A6MMH4|NU6C_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|146744239|gb|ABQ43311.1| NADH-plastoquinone oxidoreductase subunit 6 [Chloranthus spicatus]
          Length = 176

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 30/156 (19%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI S FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPISSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLIVFAVMFMN------- 82

Query: 86  PRKKRGFLGSFFIGILAAEL--IVCASNFMVFSAEGELSRLVFKG--------------- 128
                 +   F +  +      +VC S  ++FS    +    + G               
Sbjct: 83  ---GSEYYNDFHLWTIGDGFTSLVCTS--ILFSLITTIPDTSWYGIIWTTRSNQIIEQDL 137

Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            +NV+ IG  L T +  P E+   ILL+++IGAI +
Sbjct: 138 TSNVQQIGIHLSTDFYLPFELISIILLVALIGAIAM 173


>gi|119714793|ref|YP_921758.1| NADH dehydrogenase subunit J [Nocardioides sp. JS614]
 gi|119535454|gb|ABL80071.1| NADH dehydrogenase subunit J [Nocardioides sp. JS614]
          Length = 275

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 95/176 (53%), Gaps = 12/176 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ + + +I++  ++ VR  +++   L    ++ A L+  L A F+  + ++VY GA++
Sbjct: 4   FWILAPVMVIAALGLLFVRKAVHAALLLAVVMMSLAVLYAALEAPFLFAVQIIVYTGAIL 63

Query: 68  VFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121
           + FLF++M++ +D     +E    ++    +    +G++   +++  S   + +A G E 
Sbjct: 64  MLFLFVLMLVGVDASDSVVETIRGQRVLAAIAGLGLGLV---MVLGLSQISLGTAVGLED 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +     G N++ +  +L+++Y +  E++  +L+ + +GA+VL  R R   K   +S
Sbjct: 121 AN---SGGNIQALANILFSRYVFAFEVTSALLITAAVGAMVLAHRERLTPKPTQMS 173


>gi|187250360|ref|YP_001874851.1| NADH dehydrogenase subunit 6 [Panthera pardus]
 gi|21310360|gb|AAM46196.1| NADH dehydrogenase subunit 6 [Panthera leo]
 gi|21310363|gb|AAM46198.1| NADH dehydrogenase subunit 6 [Panthera leo]
 gi|145558781|gb|ABP73307.1| NADH dehydrogenase subunit 6 [Panthera pardus]
          Length = 175

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F  G+LA  L  C
Sbjct: 85  SNKA-VLGAFITGVLAELLTAC 105


>gi|126792900|gb|ABO27306.1| NADH dehydrogenase subunit 6 [Pyrrhura picta]
          Length = 167

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G ++V F++
Sbjct: 10 VLASLLVASXPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 66


>gi|126792895|gb|ABO27303.1| NADH dehydrogenase subunit 6 [Cyanopsitta spixii]
 gi|126792898|gb|ABO27305.1| NADH dehydrogenase subunit 6 [Cyanopsitta spixii]
          Length = 170

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 26/171 (15%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
           +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G ++V F++ + 
Sbjct: 13  VLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           +  D   +V       G++    +G + A +      F+V+   G      FK + V+ +
Sbjct: 73  LAADPFPQVWGGWHAVGYV----LGFVPAGV-----GFVVWGWGGW-----FKVDTVDGV 118

Query: 135 GKVL-----------YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           G +L           Y+  A    ++G+ LLL++   + L+    R + R 
Sbjct: 119 GVLLARLDLSGVALFYSCGAGMFLVAGWGLLLTLFVVLELVRGLSRGVIRA 169


>gi|290489860|gb|ADD31337.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Rhododendron
          simsii]
          Length = 177

 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
          V+ + NPIYS FSL   F + +  ++L  + FVA   +++YVGA+ V  +F +M ++
Sbjct: 26 VILLPNPIYSAFSLGLVFFSISFFYILSNSHFVAAAQILIYVGALNVLIIFAVMFMN 82


>gi|259019202|ref|YP_003204919.1| NADH dehydrogenase subunit 6 [Millerozyma farinosa]
 gi|257143763|emb|CAY39289.1| NADH dehydrogenase, subunit 6 [Millerozyma farinosa]
          Length = 146

 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 21/151 (13%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAA------GLFLLLGAEFVAMITLVVYVGAVIVFF 70
           +SS L + +  P+ S+  LI  FV+ A      G F+L+G  +V     ++YVGA+ + F
Sbjct: 7   MSSLLALGMLTPVQSITCLIVTFVSTAMSTYSEG-FILMGILYV-----LIYVGAIAILF 60

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           LFI+ +L+I+       K +G +    + IL   LI    ++  +    E + +      
Sbjct: 61  LFILSLLNIE------YKPQGSMKPIIVTILLVSLIPLDLSYETYGITTEFNTI---NEE 111

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           +  +G   YT+YA  L ++G IL++S++GAI
Sbjct: 112 LWVVGVQFYTEYAILLLMTGLILMMSVMGAI 142


>gi|90425538|ref|YP_533908.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisB18]
 gi|90107552|gb|ABD89589.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisB18]
          Length = 155

 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 26/131 (19%)

Query: 59  LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           ++VY GA+IV F+F++M +    E     ++R  L   +  + AA  ++ A+ F+    E
Sbjct: 46  IMVYAGAIIVLFVFVVMAVGTSPEAIA--RERAMLRRSW-PMPAAISVLVAAPFLFGIGE 102

Query: 119 GELSRLVFKGNN----VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                    GN      + +G++L+  +A+ +E++ F+LL  +IG     +RH       
Sbjct: 103 QA------PGNTAPIAAQAVGRLLFGPWAWAIELASFLLLAGLIG-----VRH------- 144

Query: 175 DISKQLESNPD 185
            I +     PD
Sbjct: 145 -IGRDRAQEPD 154


>gi|163744628|ref|ZP_02151988.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Oceanibulbus
           indolifex HEL-45]
 gi|161381446|gb|EDQ05855.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Oceanibulbus
           indolifex HEL-45]
          Length = 279

 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+ S +AI S + V  V + I + F+L+ +F+    + LL+ A+++ + T+ + 
Sbjct: 1   MTDIAFYILSAIAIWSGWRVFRVDSMIRATFALMVSFICVGAIALLMSADYIGVATVFMM 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEP----RKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
              ++V  LF++M + ++     P     + R  +G+  +  +   + V A++       
Sbjct: 61  AVEMMVMGLFMVMFM-MNPAGLNPMQMVHQYRLSIGAGIVAFIGLTVAVLATDL------ 113

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              + L    + + ++G  L        E +G  LL +M+GA++L  R  R
Sbjct: 114 -PHNPLPAGRDTMRDLGINLLGSSMLIFETAGVTLLATMLGAVILSSRRGR 163


>gi|114330023|ref|YP_740704.1| NADH-plastoquinone oxidoreductase subunit 6 [Nandina domestica]
 gi|122165914|sp|Q09FQ7|NU6C_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|114054525|gb|ABI49918.1| NADH-plastoquinone oxidoreductase subunit 6 [Nandina domestica]
          Length = 176

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +   +   + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFHIPANSHFVAAAQLLIYVGAINVLIVFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129
                  L +   G+ +   +VC S F+  S    +S   + G                N
Sbjct: 85  EYYNDFHLWTVGDGVTS---LVCTSIFV--SLITTISDTSWYGIIWTTRSNQIIEQDLIN 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
             + +G  L T +  P E+   ILL+++IGAI +
Sbjct: 140 KGQQLGIHLSTDFFLPFELISIILLVALIGAIAM 173


>gi|126792912|gb|ABO27312.1| NADH dehydrogenase subunit 6 [Cyanoliseus patagonus]
          Length = 170

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 16/131 (12%)

Query: 9   YLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           YL  F+ +   ++S LV +  +P Y V  L+F  +   G  + LG  FV+++  +VY+G 
Sbjct: 3   YLLVFLGVSFVLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGTSFVSLVLFMVYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F++ + +       A+P  +    G +        L+   +  +V+   GE     
Sbjct: 63  MLVVFVYSVSL------AADPFPQA--WGGWHAMGYVLGLVPAGAGLVVWGWGGE----- 109

Query: 126 FKGNNVENIGK 136
           FK + V+++G+
Sbjct: 110 FKVDVVDSVGE 120


>gi|187250387|ref|YP_001874812.1| NADH dehydrogenase subunit 6 [Uncia uncia]
 gi|145558806|gb|ABP73330.1| NADH dehydrogenase subunit 6 [Uncia uncia]
          Length = 175

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F  G+LA  L  C
Sbjct: 85  SNKA-VLGAFITGVLAELLTAC 105


>gi|167630270|ref|YP_001680769.1| proton-translocating NADH-ubiquinone oxidoreductase, chain j
           [Heliobacterium modesticaldum Ice1]
 gi|167593010|gb|ABZ84758.1| proton-translocating NADH-ubiquinone oxidoreductase, chain j
           [Heliobacterium modesticaldum Ice1]
          Length = 170

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-DID 80
           VV +++ ++S   L  +F+  AG+++LL A+F+A + ++VY GAV +   F +M+     
Sbjct: 25  VVFLKDIVHSALLLAASFIGVAGIYVLLNADFLAAVQVLVYGGAVAILIAFGVMLTRRPH 84

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCA-----SNFMVFSAEGELSRLVFKGNNVENIG 135
           ++      +    G+F     A    +C      + FM   A         +   ++ I 
Sbjct: 85  MKETNANNRWVVWGAF---TAAFTFAICGWAIAFTPFMPIDASPA------QVTAIDGIA 135

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163
             L   +  P E +  +L +++IGAI+L
Sbjct: 136 TQLLGDFVVPFEAAAILLTVALIGAIIL 163


>gi|292655143|ref|YP_003535040.1| NADH dehydrogenase-like complex subunit J1 [Haloferax volcanii
          DS2]
 gi|291372449|gb|ADE04676.1| NADH dehydrogenase-like complex subunit J1 [Haloferax volcanii
          DS2]
          Length = 86

 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 52/85 (61%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          MV +++ F LF+ + +  S  VV VR+  +S   L  A ++ A  +++L AEF+A + ++
Sbjct: 1  MVYETIAFALFALVTVGCSLGVVLVRDIWHSALLLGGALLSVAVHYVMLQAEFLAAMQVL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85
          VYVG V++   F +M+  I+ EV+ 
Sbjct: 61 VYVGGVLILITFAVMLTRINPEVSS 85


>gi|139387497|ref|YP_001122850.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris]
 gi|221272341|sp|A4GGE9|NU6C_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|112031019|gb|ABH88131.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris]
 gi|158187182|gb|ABW22815.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris]
          Length = 176

 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 22/160 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ S  VV   N I+S FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M
Sbjct: 20  ILGSLGVVFFTNTIFSAFSLGLVLVCVSLFYILSNSHFVAASQLLIYVGAINVLIIFAVM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-----VFSAEGELSRLVFKGNN 130
            ++          +   + +   GI    L+VC S F+     +            + N 
Sbjct: 80  FMN-----GSEYDQNFRVWTVGDGI---TLMVCTSIFISQINTILDTSWHGIIWTTRPNQ 131

Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           +         + IG  L T +  P E+   ILL+++IGAI
Sbjct: 132 ILEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAI 171


>gi|295065782|ref|YP_003587722.1| NADH dehydrogenase subunit 6 [Anomochloa marantoidea]
 gi|251765306|gb|ACT15460.1| NADH dehydrogenase subunit 6 [Anomochloa marantoidea]
          Length = 176

 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 14/148 (9%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  +LL  +  VA+   ++YVGA+ V  L  +M     +  +E
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYLLWNSYLVAVAQFLIYVGAINVLILLAVMF----VNSSE 85

Query: 86  PRKKRGF--LGSFFIGILAAEL------IVCASNFMVFSAEGELSRLVFKG--NNVENIG 135
             K + +  +G  F  ++   +       +  +++         +++V +G  NN++ IG
Sbjct: 86  WFKDQNYWTIGDGFTSLVCTTIPFSLMATIPDTSWYGILWTTRSNQIVEQGLNNNLQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163
             L T +  P E+   ILL+S+IGAI +
Sbjct: 146 IHLATDFYLPFELISLILLVSLIGAITM 173


>gi|212550779|ref|YP_002309096.1| NADH dehydrogenase I subunit J [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549017|dbj|BAG83685.1| NADH dehydrogenase I subunit J [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 173

 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LFS +A+ S+ L+   R+  Y    L    +  AG +L L   F+A + + VY G ++V 
Sbjct: 19  LFSILAVSSNSLL---RSATY----LFLVLLCTAGFYLFLNYHFLAAVQVSVYAGGIVVL 71

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFI---GILAAELIVCASNFMVFSA---EGELSR 123
           F+F I + +   EV   +  +    S  +   GI      +    F+  +    EG+   
Sbjct: 72  FIFAIFLTNDKSEVLIKKWWQRCTMSVLVILGGIATTAFALLKHRFIYINKSMLEGD--- 128

Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168
              +  ++  IGK L      QY  P EI   +LL  +IGAI L+ R R
Sbjct: 129 ---REIDMHLIGKALMGTGKYQYLLPFEILSLLLLACIIGAI-LIARKR 173


>gi|51245167|ref|YP_065051.1| NADH dehydrogenase, subunit 6 [Desulfotalea psychrophila LSv54]
 gi|50876204|emb|CAG36044.1| probable NADH dehydrogenase, subunit 6 [Desulfotalea psychrophila
           LSv54]
          Length = 177

 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 8/108 (7%)

Query: 43  AGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-IEVAEPRKK-RGFLGSFFIGI 100
           AGL+  L + F++M+ +++Y+GAV +   F +M+   D I+  +P K   G +G    G+
Sbjct: 51  AGLYFFLNSPFISMMQILIYIGAVSITISFGVMLASPDSIKKMQPIKPLAGPIGFAVSGM 110

Query: 101 LAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
           LA  L+     F+V  A+  +   +  G ++  IG  L TQY+   E+
Sbjct: 111 LAGALM-----FLVTRADWPIMAKITDG-SMRTIGIELLTQYSLVFEL 152


>gi|122891712|ref|YP_001004163.1| NADH dehydrogenase subunit 6 [Crocodylus siamensis]
 gi|82395897|gb|ABB72524.1| NADH dehydrogenase subunit 6 [Crocodylus porosus]
 gi|84682153|gb|ABC60415.1| NADH dehydrogenase subunit 6 [Crocodylus siamensis]
          Length = 175

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+L  F+ ++S  LV +     Y V SL+FA +  +GL +  G  F+ ++ L++Y+G ++
Sbjct: 5  FFLLCFLMMVSVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGGLL 64

Query: 68 VFFLFIIMMLD 78
          V F F +   D
Sbjct: 65 VVFAFCVGFTD 75


>gi|108802854|ref|YP_637151.1| NADH dehydrogenase subunit 6 [Crocodylus porosus]
 gi|81295123|emb|CAH18615.1| NADH dehydrogenase subunit 6 [Crocodylus porosus]
          Length = 175

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+L  F+ ++S  LV +     Y V SL+FA +  +GL +  G  F+ ++ L++Y+G ++
Sbjct: 5  FFLLCFLMMVSVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGGLL 64

Query: 68 VFFLFIIMMLD 78
          V F F +   D
Sbjct: 65 VVFAFCVGFTD 75


>gi|302345404|ref|YP_003813757.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           melaninogenica ATCC 25845]
 gi|302149226|gb|ADK95488.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           melaninogenica ATCC 25845]
          Length = 179

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 22/177 (12%)

Query: 10  LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           +F+ +A+I   S+   V+ +  + +V +L+F     AGL+ LL   F+    + +Y G +
Sbjct: 6   MFAVLAVIILASAVFCVSTKRIMRAVTALLFVLFGVAGLYFLLDYTFLGAAQISIYAGGI 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
            + ++F I ++          +   KR FL +F        L+   +  +V      L  
Sbjct: 66  TMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAFI------ALVGFGTVILVLLKNEVLRH 119

Query: 124 LVFKGNNVEN------IGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRRD 170
            V  G+++ N      IG+ L T  +Y Y  P E     LL  +IG +V++   +++
Sbjct: 120 TVVNGDSLSNEVTMETIGRNLMTANKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 176


>gi|126792902|gb|ABO27307.1| NADH dehydrogenase subunit 6 [Nandayus nenday]
          Length = 170

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLASLLVASNPSPYYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEP-RKKRG 91
          +       A+P  + RG
Sbjct: 73 L------AADPFPQARG 83


>gi|164420816|ref|YP_001648636.1| NADH dehydrogenase subunit 6 [Hydra oligactis]
 gi|158668156|gb|ABW76614.1| NADH dehydrogenase subunit 6 [Hydra oligactis]
          Length = 185

 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 48/73 (65%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          FF+  S + I  S + +   NPI+SVF L+  F  +  L + L  EF++ + +++Y+GA+
Sbjct: 4  FFFFSSILIIFGSLMCINSLNPIHSVFWLVAIFFFSXTLLINLNLEFLSFLLIIIYIGAI 63

Query: 67 IVFFLFIIMMLDI 79
          ++ FLF+IMMLDI
Sbjct: 64 VILFLFVIMMLDI 76


>gi|1171836|sp|P43194|NU6M_BRABR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394662|emb|CAA52127.1| NADH dehydrogenase subunit 6 [Brachyramphus brevirostris]
          Length = 173

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G FL LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWFLSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|13508747|emb|CAC35123.1| NADH dehydrogenase subunit 6 [Muscicapa striata]
 gi|14268494|emb|CAC39396.1| NADH dehydrogenase subunit 6 [Muscicapa striata]
          Length = 172

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 26/172 (15%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13  VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVA 72

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135
           +       AEP  +         G++   L +C    +   A G L  LV +G  V++ G
Sbjct: 73  L------AAEPYPEA----WADWGVVGHGLGMCLVIMIGIVAGGGLGCLVDEG-TVDSGG 121

Query: 136 -----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                       + Y+  A  L I G+ LLL++     ++L   R + R  I
Sbjct: 122 LSSLRMDFSGVAMFYSWGAGLLMIGGWGLLLTLF----VVLELVRGLSRGAI 169


>gi|290489886|gb|ADD31350.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Trochodendron
           aralioides]
          Length = 176

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 26/154 (16%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +   +   + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNF--------------MVFSAEGELSRLVFKG--N 129
                  L +   G+ +   +VC S F              ++++A    ++++ +   +
Sbjct: 85  EYYNDFHLWTVGDGVTS---LVCTSIFVSLITTIPDTSWYGIIWTARS--NQIIEQDLIS 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           N + IG  L T +  P E+   ILL+++IGAI +
Sbjct: 140 NSQQIGIHLSTDFFLPFELISIILLVALIGAIAM 173


>gi|22536160|gb|AAN01230.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var.
          grubii]
          Length = 160

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 47 LLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82
          +LLG  FV +  L+VYVGA+ + FLF++MML+I I 
Sbjct: 3  VLLGVGFVGISYLIVYVGAIAILFLFVVMMLNISIT 38


>gi|288801148|ref|ZP_06406604.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332082|gb|EFC70564.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 174

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 38/185 (20%)

Query: 10  LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           +F  +A+I   S+ + VT +  + +   L+F     AG++ LLG  F+    + +Y G +
Sbjct: 6   MFCILAVIILGSAIVCVTTKRIMRAATFLLFVLFGVAGIYFLLGYTFLGAAQISIYAGGI 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAELIVCASNFMVFSAEGEL 121
            + ++F        I++   R  +G   SF +     G+L A  +V    F+V  A+ E 
Sbjct: 66  TMVYIF-------AIQLVSKRTLQGLQESFSLKKSLGGVLVA--LVGLVMFLVIFAKNE- 115

Query: 122 SRLVFKGNNVE----------NIGKVL----YTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               F GN V+           +G  L      QYA P E+    LL  +IG +  M+  
Sbjct: 116 ----FIGNVVDLGLANEVSMHEVGTTLIGTDKGQYALPFELISVFLLACIIGGV--MIAR 169

Query: 168 RRDIK 172
           + D K
Sbjct: 170 KEDKK 174


>gi|20090360|ref|NP_616435.1| NADH dehydrogenase subunit J [Methanosarcina acetivorans C2A]
 gi|19915365|gb|AAM04915.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina
          acetivorans C2A]
          Length = 96

 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 42/69 (60%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L +F+ +  +  VV  ++ + +  +LI      A L++LL A+F+ +I ++VY+GA+ 
Sbjct: 16 FGLLAFVTVFFAIFVVIAKDVVRAGLALIMCMFGVAALYILLNAQFLGIIQVLVYIGAIG 75

Query: 68 VFFLFIIMM 76
          V  LF +M+
Sbjct: 76 VLILFAVML 84


>gi|73670843|ref|YP_306858.1| F420H2 dehydrogenase subunit [Methanosarcina barkeri str. Fusaro]
 gi|72398005|gb|AAZ72278.1| F420H2 dehydrogenase subunit [Methanosarcina barkeri str. Fusaro]
          Length = 83

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           +F + +L   ++V  +    ++   EL +     +N+E IG +++TQY  P E+   +LL
Sbjct: 8   AFLVVLLFTAIVVIGAFGTSWNTVSELPQSPADQSNIEGIGMLIFTQYVAPFEVLSIVLL 67

Query: 155 LSMIGAIVL 163
            S+IGAI L
Sbjct: 68  ASLIGAIYL 76


>gi|313199668|ref|YP_004021284.1| NADH-plastoquinone oxidoreductase subunit 6 [Isoetes flaccida]
 gi|291575397|gb|ADE18110.1| NADH-plastoquinone oxidoreductase subunit 6 [Isoetes flaccida]
          Length = 189

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 26/163 (15%)

Query: 22  VVTVRNPIYS--VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
           VV++ N +YS  +   +FA ++    +LLL A+FVA + + ++VGAV V  +  +   + 
Sbjct: 27  VVSLTNIVYSAPLSGSVFACISPP--YLLLNADFVAAVQISIHVGAVNVSIVSAVTSTN- 83

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFSAEGELSRLVFKG----- 128
                EP+     L ++        L +C S F      ++ ++   +S +V  G     
Sbjct: 84  -----EPQSFH--LSTYRTAGDGITLALCISLFFLPIIMILDTSWSRVSLIVLPGGIVEE 136

Query: 129 ---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              ++V+ IG  L T    P E+   +LL++++GAI    R +
Sbjct: 137 PLTDDVQRIGSHLLTDSLLPFELLSIVLLVALVGAITTARRGK 179


>gi|126640818|ref|YP_001083802.1| NADH dehydrogenase I chain J [Acinetobacter baumannii ATCC 17978]
          Length = 130

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 47 LLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89
          +++GA F   + ++VY GA++V F+F++MML++     E  +K
Sbjct: 1  MIVGAPFAGALEIIVYAGAIMVLFVFVVMMLNLGQHTVEQERK 43


>gi|4761220|gb|AAD29282.1|AF113909_1 NADH dehydrogenase ND6 subunit [Suaeda japonica]
          Length = 146

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIYVGAINVLIIFSVMFMN-----GP 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
              K   L +   GI +   +VC S F++ ++ 
Sbjct: 85  EYDKNYHLWTVGDGITS---LVCTSLFVLLTST 114


>gi|168703223|ref|ZP_02735500.1| hypothetical protein GobsU_27071 [Gemmata obscuriglobus UQM 2246]
          Length = 191

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M +  + F +       S+  VV  R+ +     L+F  V  + ++ LLGAEF     L+
Sbjct: 1  MSLPVILFAVVGAATCASALGVVAARDVVRMAVWLLFTLVGVSLIYFLLGAEFAGAAQLI 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
          VYVG  +V  +F + ML     + E R +R
Sbjct: 61 VYVGGTLVLVVFGV-MLTAHGPLRELRTRR 89


>gi|312233519|ref|YP_004021915.1| NADH dehydrogenase subunit 6 [Crocodylus palustris]
 gi|268370950|gb|ACZ02717.1| NADH dehydrogenase subunit 6 [Crocodylus palustris]
 gi|312227677|gb|ADQ52669.1| NADH dehydrogenase subunit 6 [Crocodylus palustris]
          Length = 175

 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F+L   + +IS  LV +     Y V SL+FA +  +GL +  G  F+ ++ L++Y+G ++
Sbjct: 5   FFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGGLL 64

Query: 68  VFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL--S 122
           V F F +   D    ++  A   K   ++    +GI       C  N     A G    S
Sbjct: 65  VVFAFCVGFTDDKYCELWGAGGSKVSAYVCGAGLGIGG----YCMYNSTWAEALGCFVDS 120

Query: 123 RLVFKGN-NVENIGKVLYTQYAYPLEI-SGFILLLSMIGAIVLML-RHRRDIKR 173
              + G+ N E +G  L+    + L I SG+ LL+ +   ++L+  RHR  ++ 
Sbjct: 121 VETWGGDMNNEFLGAGLFYLSGWGLLILSGWALLVVLFTIMILVRGRHRGALRS 174


>gi|239929558|ref|ZP_04686511.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672]
 gi|291437884|ref|ZP_06577274.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672]
 gi|291340779|gb|EFE67735.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672]
          Length = 255

 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   +   ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG+VI
Sbjct: 34  FLLVGLVTFGAAVVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVI 93

Query: 68  VFFLFIIMM 76
           V  LF +M+
Sbjct: 94  VLLLFGLML 102


>gi|126792904|gb|ABO27308.1| NADH dehydrogenase subunit 6 [Aratinga aurea]
          Length = 167

 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          I +S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G ++V F++
Sbjct: 10 IXASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 66


>gi|302327785|gb|ADL26986.1| NADH-quinone oxidoreductase, J subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 180

 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 27/182 (14%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ +F+ ++++   V V+N + S   LIF+FV  A L++L+ AEF+A+  ++VYVG V+
Sbjct: 8   FYVVAFVILMTAVCCVAVKNILQSAVFLIFSFVTTAILYMLMHAEFIALAQVMVYVGGVV 67

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI---------------LAAELIVCASNF 112
           +F +F I++     E A   K      +F + I               LA+ ++   +++
Sbjct: 68  IFVVFTILLTSHLGEDAFTTKMPRIFTAFALSIAFVFVMVKCVLPTPDLASGIVNSPADY 127

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
              S +    RL+  GN+           +  P EI   +LL+++I AI +  R + DI+
Sbjct: 128 S--SLQNFALRLL--GNDPNG--------FIIPFEIVSVLLLMTLICAITVARRSKEDIE 175

Query: 173 RQ 174
            +
Sbjct: 176 EE 177


>gi|126792890|gb|ABO27300.1| NADH dehydrogenase subunit 6 [Primolius auricollis]
          Length = 170

 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|149390594|ref|YP_001294238.1| NADH-plastoquinone oxidoreductase subunit 6 [Buxus microphylla]
 gi|221272312|sp|A6MM90|NU6C_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|146762339|gb|ABQ45303.1| NADH-plastoquinone oxidoreductase subunit 6 [Buxus microphylla]
          Length = 176

 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 8/149 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML---- 77
           VV + NPI+S FSL       +   +   + FVA   L++YVGA+ V  +F +M      
Sbjct: 26  VVLLTNPIFSAFSLGLVLFCISLFHIPSNSHFVAAAQLLIYVGAINVLIIFAVMFTNGSE 85

Query: 78  ---DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
              D  +             S F+ ++   L       +  +   ++       N  + I
Sbjct: 86  YYNDFHVWTVGDGVTSLVCTSIFVSLITTILDTSWYGIIWTTRSNQIIEQDLISNG-QQI 144

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           G  L T +  P E+   ILL+++IGAI +
Sbjct: 145 GIHLSTDFFLPFELVSIILLVALIGAIAM 173


>gi|325126759|ref|YP_004285904.1| NADH dehydrogenase subunit 6 [Aratinga pertinax chrysogenys]
 gi|304365501|gb|ADM26311.1| NADH dehydrogenase subunit 6 [Aratinga pertinax chrysogenys]
          Length = 170

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|294630838|ref|ZP_06709398.1| NADH dehydrogenase subunit [Streptomyces sp. e14]
 gi|292834171|gb|EFF92520.1| NADH dehydrogenase subunit [Streptomyces sp. e14]
          Length = 142

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F L       ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG+V+
Sbjct: 20 FLLVGLATFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 79

Query: 68 VFFLFIIMM 76
          V  LF +M+
Sbjct: 80 VLLLFGLML 88


>gi|126792885|gb|ABO27297.1| NADH dehydrogenase subunit 6 [Anodorhynchus hyacinthinus]
 gi|126792888|gb|ABO27299.1| NADH dehydrogenase subunit 6 [Anodorhynchus hyacinthinus]
          Length = 170

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +++S LV +  +P Y V  LIF  V   G    LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|261416725|ref|YP_003250408.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373181|gb|ACX75926.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 190

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 27/182 (14%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ +F+ ++++   V V+N + S   LIF+FV  A L++L+ AEF+A+  ++VYVG V+
Sbjct: 18  FYVVAFVILMTAVCCVAVKNILQSAVFLIFSFVTTAILYMLMHAEFIALAQVMVYVGGVV 77

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI---------------LAAELIVCASNF 112
           +F +F I++     E A   K      +F + I               LA+ ++   +++
Sbjct: 78  IFVVFTILLTSHLGEDAFTTKMPRIFTAFALSIAFVFVMVKCVLPTPDLASGIVNSPADY 137

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
              S +    RL+  GN+           +  P EI   +LL+++I AI +  R + DI+
Sbjct: 138 S--SLQNFALRLL--GNDPNG--------FIIPFEIVSVLLLMTLICAITVARRSKEDIE 185

Query: 173 RQ 174
            +
Sbjct: 186 EE 187


>gi|27819341|ref|NP_777314.1| NADH dehydrogenase subunit 6 [Anser albifrons]
 gi|27764489|gb|AAO23052.1|AF363031_13 NADH dehydrogenase subunit 6 [Anser albifrons]
          Length = 173

 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 38/187 (20%)

Query: 9   YLFSFMAIISSFLVVTVRN---PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           YL  F+ I  +  V+ V +   P Y V  L+ A V   G  L LG  FVA++  +VY+G 
Sbjct: 3   YLMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSA---EGE 120
           ++V F++ + +       AEP    G  G +        +I CA  F  +VF      G 
Sbjct: 63  MLVVFVYSVAL------AAEPFP--GAWGDW-------RVIGCAVAFVAIVFGGLVFGGF 107

Query: 121 LSRLVFKGNNVENIG-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +    F  + V N+G            + Y+  A    ++G+ LLL++     ++L   R
Sbjct: 108 MGAWKFGVSTVNNVGVFVVRSDFSGVSMFYSHGAGMFLVAGWGLLLTLF----VVLELVR 163

Query: 170 DIKRQDI 176
            + R  I
Sbjct: 164 GLSRGAI 170


>gi|255019947|ref|ZP_05292021.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus
          ATCC 51756]
 gi|254970606|gb|EET28094.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus
          ATCC 51756]
          Length = 166

 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 50 GAEFVAMITLVVYVGAVIVFFLFIIMML--DIDIEVAEPRKKRG 91
          GA FVA + +++Y+GA++V FLF IM+L  D + E    R +RG
Sbjct: 47 GAPFVAALEVILYLGAILVLFLFAIMLLRPDPEEETGARRFRRG 90


>gi|2660574|emb|CAA71361.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca]
 gi|2660576|emb|CAA71267.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca]
 gi|13508726|emb|CAC35111.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca]
 gi|13508729|emb|CAC35113.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca]
 gi|14268378|emb|CAC39329.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca]
          Length = 172

 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A +   G  + LGA FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGASFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 73 L------AAEPYPE 80


>gi|322422405|ref|YP_004221834.1| NADH dehydrogenase subunit 6 [Ixobrychus cinnamomeus]
 gi|316891687|gb|ADU57296.1| NADH dehydrogenase subunit 6 [Ixobrychus cinnamomeus]
          Length = 173

 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 23/171 (13%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
           ++    V +  +P Y V  L+ A V   G  L LGA F++++  +VY+G ++V FL+ + 
Sbjct: 13  VLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGASFISLVLFLVYLGGMLVVFLYSVS 72

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVCASNFMVFSAEGEL--SRLVFKG 128
           +  D   E     +  G+   F +    G +   L+ C  + +V    G++  +RL F G
Sbjct: 73  LAADPFPEAWGDWRVVGYGVGFVLVCVMGAVIGGLVGCWKSSVVTVDAGDMFSTRLDFSG 132

Query: 129 NNV---ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             +   E +G  L         + G+ LLL++     ++L   R + R  I
Sbjct: 133 VAMFYSEGVGMFL---------VGGWGLLLTLF----VVLELVRGLSRGAI 170


>gi|288803380|ref|ZP_06408813.1| NADH dehydrogenase I, subunit 6 [Prevotella melaninogenica D18]
 gi|288334200|gb|EFC72642.1| NADH dehydrogenase I, subunit 6 [Prevotella melaninogenica D18]
          Length = 174

 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 22/177 (12%)

Query: 10  LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           +F+ +A+I   S+   V+ +  + +  +L+F     AGL+ LL   F+    + +Y G +
Sbjct: 1   MFAVLAVIILASAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAAQISIYAGGI 60

Query: 67  IVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
            + ++F I ++          +   KR FL +F        L+   +  +V      L  
Sbjct: 61  TMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAFI------ALVGFGTVILVLLKNQVLRH 114

Query: 124 LVFKGNNVEN------IGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRRD 170
            V  G+++ N      IG+ L T  +Y Y  P E     LL  +IG +V++   +++
Sbjct: 115 TVVNGDSLSNEVTMETIGRNLMTANKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 171


>gi|218157272|ref|YP_002364428.1| NADH dehydrogenase subunit 6 [Agapornis roseicollis]
 gi|166093081|gb|ABY82515.1| NADH dehydrogenase subunit 6 [Agapornis roseicollis]
          Length = 171

 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 37/57 (64%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++++ LV +  +P Y V  L+F  V A G  + LGA F++++  +VY+G ++V F++
Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVY 69


>gi|49257002|dbj|BAD24801.1| NADH dehydrogenase subunit 6 [Varanus komodoensis]
          Length = 176

 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+S  +V +  +P+Y V SL+F    A G+ ++ G  F++++  +VY+G +IV F + + 
Sbjct: 13  IVSGLMVSSNPSPLYGVVSLVFLAFLACGVLVVCGYSFLSLVLFLVYLGGMIVVFAYSVA 72

Query: 76  MLD-------IDIEVAEPRKKRGFLGSFFI 98
           M         +D  V  PR   G +G F +
Sbjct: 73  MASELRPEAWLDWSVL-PRFLGGLIGIFVV 101


>gi|38349487|ref|NP_941389.1| NADH dehydrogenase subunit 6 [Acinonyx jubatus]
 gi|33340793|gb|AAQ14963.1|AF344830_12 NADH dehydrogenase subunit 6 [Acinonyx jubatus]
 gi|38373510|gb|AAR19078.1| NADH dehydrogenase subunit 6 [Acinonyx jubatus]
          Length = 175

 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG F  G+LA  L  C
Sbjct: 85  SNKA-VLGMFITGVLAELLTAC 105


>gi|188581794|ref|YP_001925239.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Methylobacterium populi BJ001]
 gi|179345292|gb|ACB80704.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Methylobacterium populi BJ001]
          Length = 335

 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 44/70 (62%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F + +F+A+  +  + T  +   S   L+ +F+  AGLF+LL A+ + ++ +++Y+G  +
Sbjct: 10 FLVCAFVAVAGALGMTTTMSMFRSGIFLMASFIGVAGLFILLSADLIGLLQVMMYIGGFL 69

Query: 68 VFFLFIIMML 77
          V  LF+++++
Sbjct: 70 VMILFMVLVM 79


>gi|224474105|gb|ACN49296.1| Nad6p [Candida orthopsilosis]
          Length = 155

 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 24/157 (15%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAA-----GLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           ISS L + + +P+ S+  LI  FV+AA       F+L+G  +V     ++YVGA+ + FL
Sbjct: 7   ISSILAIGLLSPVQSIVCLIALFVSAAISLYSNGFVLMGILYV-----LIYVGAIAILFL 61

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN- 130
           FI+ +L+I+         +G +      IL   LI    ++  +    E   + +  N  
Sbjct: 62  FILSLLNIE------YNYKGTIHPLIFTILLICLIPLDLSYETYGIV-ENVNIAYPFNGL 114

Query: 131 ------VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                 +  +G +LYT+YA P+   G IL+LS+IGAI
Sbjct: 115 LDWDLELSTVGTLLYTEYAIPMIFIGLILILSVIGAI 151


>gi|126792914|gb|ABO27313.1| NADH dehydrogenase subunit 6 [Bolborhynchus lineola]
          Length = 171

 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++++ LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|1085235|pir||S42246 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 6 - snow goose
           mitochondrion
          Length = 173

 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 35/166 (21%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + +       AEP
Sbjct: 24  SPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77

Query: 87  RKKRGFLGSFFIGILAAELIVCASNF--MVFSA---EGELSRLVFKGNNVENIG------ 135
               G  G +        +I CA  F  +VF      G +    F  + V N+G      
Sbjct: 78  FP--GAWGDW-------RVIGCAVAFVAIVFGGLVFGGFMGAWKFGVSTVNNVGVFVVRS 128

Query: 136 -----KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                 + Y+  A    ++G+ LLL++     ++L   R + R  I
Sbjct: 129 DFSGVSMFYSHGAGMFLVAGWGLLLTLF----VVLELVRGLSRGAI 170


>gi|309322022|ref|YP_003935010.1| NADH dehydrogenase subunit 6 [Candida alai]
 gi|308746499|gb|ADO51034.1| NADH dehydrogenase subunit 6 [Candida alai]
          Length = 148

 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 43/69 (62%)

Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
          S ++ I+S L + + +PI S+  LI  F + A    + G   + ++ +++YVGA+ + FL
Sbjct: 2  SIISGIASLLAIGILSPIQSILCLIIIFTSTAIYLYINGFILMGILYILIYVGAIAILFL 61

Query: 72 FIIMMLDID 80
          FI+ +L+I+
Sbjct: 62 FIVSLLNIE 70


>gi|197935733|ref|YP_002213637.1| NADH dehydrogenase subunit 6 [Anser anser]
 gi|197131218|gb|ACH47164.1| NADH dehydrogenase subunit 6 [Anser anser]
          Length = 173

 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 35/166 (21%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + +       AEP
Sbjct: 24  SPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77

Query: 87  RKKRGFLGSFFIGILAAELIVCASNF--MVFSA---EGELSRLVFKGNNVENIG------ 135
               G  G +        +I CA  F  +VF      G +    F  + V N+G      
Sbjct: 78  FP--GAWGDW-------RVIGCAVAFVAIVFGGLVFGGFMGAWKFGVSTVNNVGVFVVRS 128

Query: 136 -----KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                 + Y+  A    ++G+ LLL++     ++L   R + R  I
Sbjct: 129 DFSGVSMFYSHGAGMFLVAGWGLLLTLF----VVLELVRGLSRGAI 170


>gi|115523736|ref|YP_780647.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisA53]
 gi|115517683|gb|ABJ05667.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisA53]
          Length = 166

 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 10/109 (9%)

Query: 59  LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           ++VY GA++V F+F+ M +  D + A  R++     S+   + AA  I+ A+ F+    +
Sbjct: 57  IIVYAGAIVVLFVFVAMTVGTD-DAAMERERDQLERSW--PMPAAISILVAAPFLFGIGD 113

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              S       + + +G++L+  +A+ +E++ F+LL  +IG     +RH
Sbjct: 114 PIPSHATPV--SAQAVGRLLFGPWAWAIELASFLLLAGLIG-----VRH 155


>gi|325298887|ref|YP_004258804.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           salanitronis DSM 18170]
 gi|324318440|gb|ADY36331.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           salanitronis DSM 18170]
          Length = 175

 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 15/173 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++ FY+ +    + S L VT    + +   L+F     A +F +LG  F+  + L+VY 
Sbjct: 10  QNIVFYVVAAAIALCSVLAVTSGKLLRAATYLLFVLFGTAAIFFMLGYTFLGAVQLMVYA 69

Query: 64  GAVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           G +IV ++F I +   D ++  +  K R F       +LA  ++  A   ++    G   
Sbjct: 70  GGIIVLYVFSIALTRSDKDMRYKISKARLF------SVLATTVVGAALVLLLLFTNGFAL 123

Query: 123 RLVFKGNNVEN-------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             +  G  + +       IG   Y Q+  P E+   +LL  MIG I++  + +
Sbjct: 124 NAIPLGEELPSREVGMALIGTEKY-QFVLPFEVVSVLLLACMIGGILIARKEK 175


>gi|116329147|ref|YP_798867.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330245|ref|YP_799963.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121891|gb|ABJ79934.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123934|gb|ABJ75205.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 224

 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 51/207 (24%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q L F+LF+ + I+SS  V+   N I +   L+ +F + A ++ ++ A F+A + L+VY 
Sbjct: 8   QLLLFFLFASVMILSSLGVIFHPNAITAAVLLVLSFFSLAAIYAVMNAVFIATMQLLVYA 67

Query: 64  GAVI----------------------------VFFLFIIMMLDI---------------- 79
           GA++                            + +L ++M LD+                
Sbjct: 68  GAIMVLVVFVLMLLSLREDDTKLFLFEKPIKKLLYLGLVMFLDVLLITAVQDGIPSENSP 127

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG---ELSRLVFKGNNVENIGK 136
            I   + R  R    SF I     E       F  + ++G       LV    N   +G 
Sbjct: 128 KIGYTKTRDGRSMDYSFTIHPRRPEY----KEFEEYKSKGLSIRPPSLVEVSGNTAVVGS 183

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVL 163
            ++ +Y  P E+   +LL +++G +VL
Sbjct: 184 AMFLRYLLPFELISILLLAAVLGVVVL 210


>gi|108804465|ref|YP_644402.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Rubrobacter xylanophilus DSM 9941]
 gi|108765708|gb|ABG04590.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
          [Rubrobacter xylanophilus DSM 9941]
          Length = 177

 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F   + M ++S+  VV  R+ ++S   +  AF+  AG F++L    +A   +++YVGAV 
Sbjct: 5  FAFLTGMTLVSALGVVLSRSVVHSALFMSGAFLGVAGFFVMLNVPVLAAFQVLIYVGAVT 64

Query: 68 VFFLFIIM 75
          V  LF IM
Sbjct: 65 VVILFGIM 72


>gi|218157328|ref|YP_002364480.1| NADH dehydrogenase subunit 6 [Todiramphus sanctus vagans]
 gi|166093123|gb|ABY82554.1| NADH dehydrogenase subunit 6 [Todiramphus sanctus vagans]
          Length = 173

 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +   F  I+    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G +
Sbjct: 4  FMFFLGFCFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLNLGVSFVALVLFMVYLGGM 63

Query: 67 IVFFLF 72
          +V F++
Sbjct: 64 LVVFVY 69


>gi|110346915|ref|YP_665734.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus]
 gi|82697223|emb|CAH18628.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus]
 gi|110083410|dbj|BAE97415.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus]
          Length = 175

 Score = 38.5 bits (88), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+  F +L   M ++   LV       Y V SL+FA V ++GL ++ G  F+ ++ L++Y
Sbjct: 1   MEIAFLFLCCLM-LVGVVLVAAGATTHYGVVSLLFAAVLSSGLLVVGGGSFMPIVVLLIY 59

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGIL 101
           +G ++V F F +   D +  E       +G  G   +G++
Sbjct: 60  LGGLLVVFAFCVGFTDDEYCEFWGTGASKGVAGVCGVGLM 99


>gi|126792916|gb|ABO27314.1| NADH dehydrogenase subunit 6 [Aratinga solstitialis]
          Length = 170

 Score = 38.5 bits (88), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +++S LV +  +P Y V  L+F  +   G  + LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|126792918|gb|ABO27315.1| NADH dehydrogenase subunit 6 [Enicognathus leptorhynchus]
          Length = 170

 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +++S LV +  +P Y V  L+F  +   G  + LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|16797931|gb|AAL29218.1| NADH dehydrogenase subunit 6 [Pluvialis squatarola]
          Length = 173

 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 9/121 (7%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
           ++ +  V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13  VLGALAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVA 72

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV-----CASNFMVFSAEGELS--RLVFK 127
           +  D   E     +  G+ G  F+ +LA  L++     C  + +V    G LS  RL F 
Sbjct: 73  LAADPFPEAWGDWRVVGY-GVSFVLVLAVGLVIGGSVGCWKSGVVTVDSGGLSFVRLDFG 131

Query: 128 G 128
           G
Sbjct: 132 G 132


>gi|46205959|ref|ZP_00210109.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J)
          [Magnetospirillum magnetotacticum MS-1]
          Length = 221

 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 43/70 (61%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F   +F+A+  +  + T  +   S   L+ +F+  AGLF+LL A+ + ++ +++Y+G  +
Sbjct: 10 FATCAFVAVAGALGMTTTMSMFRSGIFLMASFIGVAGLFILLSADLIGLLQVMMYIGGFL 69

Query: 68 VFFLFIIMML 77
          V  LF+++++
Sbjct: 70 VMILFMVLVM 79


>gi|320532479|ref|ZP_08033302.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320135309|gb|EFW27434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 292

 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F + + + +     V+T +  + +  ++I   ++ A L+++  + F+ +  +VVY 
Sbjct: 27  EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 86

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+   LF+IM++ +  +  EP    G +    + IL    +  A   +V+ +   L  
Sbjct: 87  GAVMTLVLFVIMLVGVGGD--EPVGAAGTVMRRPVLILLGLGLAGALTAVVWRS--TLPT 142

Query: 124 LVFKGNNVEN----IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            V   N  +     +   LY  +   +E++  +L+++ +GA+ L  R R
Sbjct: 143 PVGLKNGAKAAPDLLAVTLYHDHVVTMELTAILLIVAAVGALTLTHRQR 191


>gi|325067547|ref|ZP_08126220.1| NADH:ubiquinone oxidoreductase subunit J [Actinomyces oris K20]
          Length = 281

 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F + + + +     V+T +  + +  ++I   ++ A L+++  + F+ +  +VVY 
Sbjct: 27  EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 86

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+   LF+IM++ +  +  EP    G +    + IL    +  A   +V+ +      
Sbjct: 87  GAVMTLVLFVIMLVGVGGD--EPVGAAGTVMRRPVLILLGLGLAGALTAVVWRSTLPTPA 144

Query: 124 LVFKGNNVEN--IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +  G       +   LY  +   +E++  +L+++ +GA  L L HR+ I+
Sbjct: 145 GLKDGAKAAPDLLAVTLYHDHVVTMELTAILLIVAAVGA--LTLTHRQRIR 193


>gi|187250374|ref|YP_001874864.1| NADH dehydrogenase subunit 6 [Panthera tigris]
 gi|313768487|ref|YP_004062164.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis]
 gi|78709126|gb|ABB48052.1| NADH dehydrogenase subunit 6 [Panthera tigris]
 gi|145558795|gb|ABP73320.1| NADH dehydrogenase subunit 6 [Panthera tigris]
 gi|301506369|gb|ADK77660.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis]
 gi|301506383|gb|ADK77673.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis]
          Length = 175

 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGLGLIVAGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F  G+LA  L  C
Sbjct: 85  SNKA-VLGAFITGVLAELLTAC 105


>gi|108796794|ref|YP_636372.1| NADH dehydrogenase subunit 6 [Staurastrum punctulatum]
 gi|122211817|sp|Q32S04|NU6C_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|61393562|gb|AAX45703.1| subunit 6 of NADH-plastoquinone oxidoreductase [Staurastrum
           punctulatum]
          Length = 181

 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           IYS   L   FV  A L+LLL A+F+A   +++YVGA+ V  +F IM+++   E    +K
Sbjct: 36  IYSALFLGVVFVCVALLYLLLNADFLAAAQILIYVGAINVLIVFAIMLIN-KPETKINKK 94

Query: 89  KRGF---LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145
           K  F   L  F +  L + LI+   N            +     +++ IG  L T    P
Sbjct: 95  KITFGDILSGFSVFGLFSFLIIMILNTTWLQPTLVSQEVKNSFQSIDIIGIHLLTDLLLP 154

Query: 146 LEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            E+   +LL++++GAI         I R++IS ++
Sbjct: 155 FELLSILLLVALVGAIT--------IARKEISPKI 181


>gi|258647049|ref|ZP_05734518.1| NADH dehydrogenase I, subunit 6 [Prevotella tannerae ATCC 51259]
 gi|260853164|gb|EEX73033.1| NADH dehydrogenase I, subunit 6 [Prevotella tannerae ATCC 51259]
          Length = 170

 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 42/73 (57%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++ F + + + + S+F  V  ++ I +   L F  +  AG++ L+G  F+  + ++VY 
Sbjct: 4  HNIMFVVLAVLMVFSAFATVLTKSIIRAATYLFFVLLGTAGMYFLMGYTFLGAVQVMVYA 63

Query: 64 GAVIVFFLFIIMM 76
          G ++V ++F I++
Sbjct: 64 GGIVVLYVFAILL 76


>gi|126792879|gb|ABO27293.1| NADH dehydrogenase subunit 6 [Guaruba guarouba]
          Length = 170

 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +++S LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGTSFVSLVLFMVYLGGMLVVFVY 69


>gi|126792882|gb|ABO27295.1| NADH dehydrogenase subunit 6 [Guaruba guarouba]
          Length = 170

 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +++S LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGTSFVSLVLFMVYLGGMLVVFVY 69


>gi|219524130|ref|YP_002456280.1| NADH dehydrogenase subunit 6 [Manouria impressa]
 gi|149193526|gb|ABR21226.1| NADH dehydrogenase subunit 6 [Manouria impressa]
          Length = 174

 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y VFSL+    +  G+ + +G  FV+++  +VY+G +
Sbjct: 4  FMFLFGFCFVFWMIGVSCSSSPYYGVFSLVLGAASGCGVLVGMGGSFVSLVLFLVYLGGM 63

Query: 67 IVFFLF 72
          +V F +
Sbjct: 64 LVIFAY 69


>gi|5835217|ref|NP_008262.1|ND6_10685 NADH dehydrogenase subunit 6 [Felis catus]
 gi|1352592|sp|P48926|NU6M_FELCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1098535|gb|AAC48580.1| NADH dehydrogenase subunit 6 [Felis catus]
          Length = 175

 Score = 38.1 bits (87), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGTGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 85  SNKA-VLAMFITGVLAELLTAC 105


>gi|126792893|gb|ABO27302.1| NADH dehydrogenase subunit 6 [Ara ararauna]
          Length = 170

 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          I++S LV +  +P Y V  L+F  +   G  + LG+ FV+++  +VY+G ++V F++
Sbjct: 13 ILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGSSFVSLVLFMVYLGGMLVVFVY 69


>gi|312233191|ref|YP_004021415.1| NADH dehydrogenase subunit 6 [Phalacrocorax chalconotus]
 gi|312233192|ref|YP_004021416.1| NADH dehydrogenase subunit 6 [Phalacrocorax chalconotus]
          Length = 173

 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       A+P  K
Sbjct: 73 L------AADPYPK 80


>gi|126792873|gb|ABO27289.1| NADH dehydrogenase subunit 6 [Diopsittaca nobilis]
 gi|126792876|gb|ABO27291.1| NADH 6 [Diopsittaca nobilis]
          Length = 170

 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +++S LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|116754361|ref|YP_843479.1| NADH dehydrogenase subunit J [Methanosaeta thermophila PT]
 gi|116665812|gb|ABK14839.1| NADH dehydrogenase subunit J [Methanosaeta thermophila PT]
          Length = 96

 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          + L V  RN ++S   LI +F   A L++ L A F+ +  ++VY+GAV V  LF +M+
Sbjct: 28 AVLTVYSRNIVHSALYLIGSFAGVAALYISLNAPFLGVAQVLVYIGAVGVLILFAVML 85


>gi|312233106|ref|YP_004021088.1| NADH dehydrogenase subunit 6 [Crocodylus mindorensis]
 gi|268370964|gb|ACZ02730.1| NADH dehydrogenase subunit 6 [Crocodylus mindorensis]
          Length = 174

 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 25/180 (13%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +L  F+ +IS  LV +     Y V SL+FA +  +GL  + G  F+ ++ L++Y+G ++V
Sbjct: 5   FLLCFLMMISVVLVASGVTIHYGVVSLLFAAMFGSGLLAVGGGGFMPLVVLLIYLGGLLV 64

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN------FMVFSAEGE-- 120
            F F +   D         K   F G+   G       VC S       +M  SA  E  
Sbjct: 65  VFAFCVGFTD--------DKYCEFWGA---GGSKVSAYVCGSGLGVGGYYMYDSAWAEAL 113

Query: 121 ---LSRLVFKGNNV--ENIGKVLYTQYAYP-LEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
              +  +   G +V  E +G  LY    +  L +SG+ LL+ +   ++L+   RR   R 
Sbjct: 114 GCFVDAVEIWGGDVSSEFLGVGLYYLSGWGFLVLSGWALLVVLFTIMILVRGRRRGALRS 173


>gi|224483640|gb|ACN51361.1| NADH dehydrogenase subunit 6 [Saxicola rubicola]
          Length = 172

 Score = 38.1 bits (87), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ + F    F  ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MQFVLFLGVCF--VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F++ + +       AEP  +    G +  G++   L +C    +     G + 
Sbjct: 60  LGGMLVVFVYSVSL------AAEPYPEA--WGDW--GVVGHGLGMCLVVMVGIMVGGGMD 109

Query: 123 RLVFKGNNVENIG 135
            LV  G  V++ G
Sbjct: 110 SLV-DGGTVDSGG 121


>gi|2660580|emb|CAA71364.1| NADH dehydrogenase subunit 6 [Luscinia svecica]
          Length = 172

 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVLGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 73 L------AAEPYPE 80


>gi|313126881|ref|YP_004037151.1| NADH dehydrogenase subunit j [Halogeometricum borinquense DSM
          11551]
 gi|312293246|gb|ADQ67706.1| NADH dehydrogenase subunit J [Halogeometricum borinquense DSM
          11551]
          Length = 86

 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          MV +++ F LF+ + +  S  VV VR+  +S   L  A ++ A  +++L AEF+A + ++
Sbjct: 1  MVYETIAFALFALITVGCSLGVVLVRDIWHSALLLGGALLSVAVHYVMLQAEFLAAMQIL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEP 86
          VYVG V++   F +M+    +E +  
Sbjct: 61 VYVGGVLILVTFAVMLTRTRLEASST 86


>gi|189095565|ref|YP_001936271.1| NADH dehydrogenase subunit 6 [Aphrocallistes vastus]
 gi|150024083|gb|ABR58844.1| NADH dehydrogenase subunit 6 [Aphrocallistes vastus]
          Length = 188

 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           ++  LV + R  I  V  LI  F+N + L +LL  EF+A+  ++VYVGA+ + F+FIIM+
Sbjct: 11  LTRLLVTSSRRTINRVIWLILRFINTSLLLILLKLEFIAIFIIIVYVGAIAILFIFIIMI 70

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVE 132
           L++  +  + +K R  L    + I    ++                R+  K      N+E
Sbjct: 71  LNLRNQ--KHKKSRNHLIPIRLIIRITLILHITEIIKKRKINNNQERISNKQIINLRNLE 128

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
            I  ++Y+ Y   L I   ILLL M+ AI++  +       Q+I +QL +    +I+ +K
Sbjct: 129 IIRNLIYSNYCEWLIIRRAILLLRMLTAILISEKE----NTQNIKQQLFTQIQRTIITMK 184


>gi|1589126|prf||2210305M NADH dehydrogenase:SUBUNIT=6
          Length = 781

 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 631 SPIYGGFGLIVAGGTGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 690

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 691 SNK-AVLAMFITGVLAELLTAC 711


>gi|332558536|ref|ZP_08412858.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides WS8N]
 gi|332276248|gb|EGJ21563.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides WS8N]
          Length = 164

 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 14/172 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L     + +A+ S+ L VT    ++++  L+ A ++ AG F  LGA F   + +++Y
Sbjct: 1   MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++  F+F++M  D   E  A  R +           +A   +      +  ++  E 
Sbjct: 61  AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLARTSAPEA 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH---RRD 170
           +     G     +G +L+  +A  +E++  +LL +++GA     RH   RR+
Sbjct: 121 APATGAG-----LGAILFGPWALAIEVASGLLLAALMGA-----RHLGRRRE 162


>gi|126792906|gb|ABO27309.1| NADH dehydrogenase subunit 6 [Aratinga leucophthalma]
          Length = 170

 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++++ LV T  +P Y V  L+F  +   G  + LGA F++++  +VY+G ++V F++
Sbjct: 13 VLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVY 69


>gi|301353270|ref|YP_003795347.1| NADH dehydrogenase subunit 6 [Pseudopodoces humilis]
 gi|301016353|gb|ADK47637.1| NADH dehydrogenase subunit 6 [Pseudopodoces humilis]
          Length = 172

 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          MQ + F    F  I+    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MQFVLFLGVCF--ILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89
          +G ++V F++ + +       AEP  +
Sbjct: 60 LGGMLVVFVYSVSL------AAEPYPE 80


>gi|1171845|sp|P43202|NU6M_FRACI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394680|emb|CAA52136.1| NADH dehydrogenase subunit 6 [Fratercula cirrhata]
          Length = 173

 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 7   FFYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +F LF S   ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G 
Sbjct: 3   YFVLFLSLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGG 62

Query: 66  VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           ++V F++ + +  D   E     +  G+ G  F+G+L   L++
Sbjct: 63  MLVVFVYSVALAADPFPEAWGDWRVVGY-GVSFVGVLVMGLVI 104


>gi|107735872|ref|YP_626459.1| NADH dehydrogenase subunit 6 [Metarhizium anisopliae]
 gi|57904574|gb|AAW58829.1| NADH dehydrogenase subunit 6 [Metarhizium anisopliae]
          Length = 225

 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 43/205 (20%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  + S +A++    V+  +NPI S+ SLI  F + +   +L G  F+    L+VY+GAV
Sbjct: 19  FLDIISVIALLFGIAVIVNKNPIASLLSLIGLFGSISVYLILSGLTFIGFSYLIVYIGAV 78

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL------------------------- 101
            + FLFI+M+L+I     +         + FI IL                         
Sbjct: 79  SILFLFILMLLNIRTSELQSNNVNSIPLALFITILFNYALFQLLPYYMAILNSYNSKLSN 138

Query: 102 -----------------AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAY 144
                             + L +   N M F         + + +++  IG +LYT Y  
Sbjct: 139 ILYYLPTSKYSDIIMNTNSNLDIDTHNIM-FVTSNSWDGTITETSHISTIGNILYTSYNM 197

Query: 145 PLEISGFILLLSMIGAIVLMLRHRR 169
            L +   ILL+ M+GAI++ ++   
Sbjct: 198 WLFLVSIILLVVMVGAIIITIKQET 222


>gi|155624795|gb|ABU24808.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  LI C
Sbjct: 85  SNKA-VLAMFITGVLAELLIAC 105


>gi|312233220|ref|YP_004021442.1| NADH dehydrogenase subunit 6 [Anhinga rufa]
 gi|312233221|ref|YP_004021443.1| NADH dehydrogenase subunit 6 [Anhinga rufa]
          Length = 173

 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVY 69


>gi|317503347|ref|ZP_07961394.1| NADH dehydrogenase subunit J [Prevotella salivae DSM 15606]
 gi|315665526|gb|EFV05146.1| NADH dehydrogenase subunit J [Prevotella salivae DSM 15606]
          Length = 173

 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 11/171 (6%)

Query: 10  LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           +F  +A+I   S+ + VT +  + +   L+      AG++ +L   F+    + VY G +
Sbjct: 6   MFCILAVIILGSAIVCVTTKRIMRAATFLLCVLFGVAGIYFILDYTFLGAAQISVYAGGI 65

Query: 67  IVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAEGEL 121
            V ++F+I ++    +   V   + KR F G      G+L   L++  +NF   + +   
Sbjct: 66  TVLYVFVIQLVSKRTLQGLVERFKGKRVFSGVLLCVAGLLTVGLVLIKNNFYNAALQTTD 125

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           + +         +G   Y QY  P E     LL  +IG I  M+  + D K
Sbjct: 126 TEVPMAQIGTALLGSDKY-QYVLPFEFISVFLLACIIGGI--MIARKEDNK 173


>gi|77463680|ref|YP_353184.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides 2.4.1]
 gi|77388098|gb|ABA79283.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides 2.4.1]
          Length = 164

 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 14/172 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L     + +A+ S+ L VT    ++++  L+ A ++ AG F  LGA F   + +++Y
Sbjct: 1   MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++  F+F++M  D   E  A  R +           +A   +      +  ++  E 
Sbjct: 61  AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLTRTSAPEA 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH---RRD 170
           +     G     +G +L+  +A  +E++  +LL +++GA     RH   RR+
Sbjct: 121 APATGAG-----LGAILFGPWALAVEVASGLLLAALMGA-----RHLGRRRE 162


>gi|315638071|ref|ZP_07893256.1| NADH-quinone oxidoreductase subunit J [Campylobacter upsaliensis
           JV21]
 gi|315481919|gb|EFU72538.1| NADH-quinone oxidoreductase subunit J [Campylobacter upsaliensis
           JV21]
          Length = 172

 Score = 37.7 bits (86), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 13  FMAIISSFLVVTV--RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           F  +I  F +V V  +N +YS+ +L    V  +  + +L AEF+  I ++VY GAV+  +
Sbjct: 10  FSVLILGFFLVAVLSKNMLYSLSALAGGMVFLSSFYFMLDAEFLGAIQIIVYSGAVLGIY 69

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
            F +M  D   +  E  K   F  SFF  ++   L+   ++ M F        L F    
Sbjct: 70  SFAMMFFDASKDFKERLK---FKKSFF-ALIGLSLVGLFASLMSFKLNSVNVDLPFIDTA 125

Query: 131 VENIGKVL----YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           + ++ K L    +++Y    E    +LL++++ AIV  L H+  IK + 
Sbjct: 126 LFDLNKQLAFAIFSKYLLAFEFVALLLLIALVCAIV--LTHKELIKEKQ 172


>gi|224483638|gb|ACN51360.1| NADH dehydrogenase subunit 6 [Saxicola rubicola]
          Length = 172

 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 11/120 (9%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13  VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135
           +       AEP  +    G +  G++   L +C    +     G +  LV  G  V++ G
Sbjct: 73  L------AAEPYPEA--WGDW--GVVGHGLGMCLVVMVGIMVGGGMDSLV-DGGTVDSGG 121


>gi|325126815|ref|YP_004285956.1| NADH dehydrogenase subunit 6 [Bycanistes brevis]
 gi|304365529|gb|ADM26337.1| NADH dehydrogenase subunit 6 [Bycanistes brevis]
          Length = 173

 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          I+    V +  +P Y V  L+   V   G  L LGA F+A++  +VY+G ++V F++ + 
Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGASFIALVLFMVYLGGMLVVFVYSVA 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|221639524|ref|YP_002525786.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides KD131]
 gi|221160305|gb|ACM01285.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 precursor
           [Rhodobacter sphaeroides KD131]
          Length = 164

 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 14/172 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L     + +A+ S+ L VT    ++++  L+ A ++ AG F  LGA F   + +++Y
Sbjct: 1   MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++  F+F++M  D   E  A  R +           +A   +      +  ++  E 
Sbjct: 61  AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALLAVPLVLGLLARASAPEA 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH---RRD 170
           +     G     +G +L+  +A  +E++  +LL +++GA     RH   RR+
Sbjct: 121 APATGAG-----LGAILFGPWALAVEVASGLLLAALMGA-----RHLGRRRE 162


>gi|190349382|ref|YP_001974694.1| NADH dehydrogenase subunit 6 [Pyxidea mouhotii]
 gi|108863145|gb|ABG22137.1| NADH dehydrogenase subunit 6 [Pyxidea mouhotii]
          Length = 174

 Score = 37.7 bits (86), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63

Query: 67 IVFFLF 72
          +V F +
Sbjct: 64 LVIFAY 69


>gi|156142532|gb|ABU52031.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++  + V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGWAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|126462512|ref|YP_001043626.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104176|gb|ABN76854.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 164

 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 14/172 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L     + +A+ S+ L VT    ++++  L+ A ++ AG F  LGA F   + +++Y
Sbjct: 1   MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++  F+F++M  D   E  A  R +           +A   +      +  ++  E 
Sbjct: 61  AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLTRASAPEA 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH---RRD 170
           +     G     +G +L+  +A  +E++  +LL +++GA     RH   RR+
Sbjct: 121 APATGAG-----LGAILFGPWALAVEVASGLLLAALMGA-----RHLGRRRE 162


>gi|11643335|gb|AAG39528.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 29/182 (15%)

Query: 8   FYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F LF S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +V F++ +  L  D    E     G +G  F +G++   ++V A    VF        ++
Sbjct: 64  LVVFVYWV-SLAAD-PYPEAWGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVL 111

Query: 126 FKGNNVENIG-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             G  V N+G            VLY+  A    I G+ LLL++     ++L   R + R 
Sbjct: 112 VDGGTVNNVGVSFVRSDFGGVAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRG 167

Query: 175 DI 176
            I
Sbjct: 168 AI 169


>gi|55378234|ref|YP_136084.1| NADH dehydrogenase subunit J [Haloarcula marismortui ATCC 43049]
 gi|55230959|gb|AAV46378.1| NAD(P)H-quinone oxidoreductase chain 6 [Haloarcula marismortui
          ATCC 43049]
          Length = 89

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 47/82 (57%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          +S+ F LF+ + + S+  VV VR+  +S   L  + ++ A  +++  A FVA + ++VYV
Sbjct: 5  ESIAFALFAIVTVGSAAGVVLVRDVWHSALLLGVSLISVAVFYVMNQAAFVATMQILVYV 64

Query: 64 GAVIVFFLFIIMMLDIDIEVAE 85
          G V++   F +M+   D  V E
Sbjct: 65 GGVLILITFAVMLTREDESVIE 86


>gi|224588006|ref|YP_002640537.1| NADH dehydrogenase subunit 6 [Gallirallus okinawae]
 gi|224471565|dbj|BAH24060.1| NADH dehydrogenase subunit 6 [Gallirallus okinawae]
          Length = 173

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 9  YLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          YL  F+ +   +    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G 
Sbjct: 3  YLMYFLGVCFVLGGLGVASNPSPYYGVVGLVLASVAGCGWLLSLGLSFVSLVLFMVYLGG 62

Query: 66 VIVFFLF 72
          ++V FL+
Sbjct: 63 MLVVFLY 69


>gi|11643427|gb|AAG39574.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
          Length = 172

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 28/162 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24  SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87  -RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135
             K  G  G    G     +IV  +        G    LV  G  V N+G          
Sbjct: 78  YPKAWGDWGVVGYGFGMGMVIVVGA-----VVSGVFEVLV-DGGTVNNVGVSFIRLDFGG 131

Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             VLY+  A    I G+ LLL++     ++L   R + R  I
Sbjct: 132 AAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169


>gi|91975814|ref|YP_568473.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisB5]
 gi|91682270|gb|ABE38572.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisB5]
          Length = 168

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S+ + VT  N ++++  L+   +  A  F  LGA F A++ +++Y GA++V F+F++
Sbjct: 13  ALVSAAIAVTRPNAVHALLYLVVTLLALAVAFFALGAAFAAVLLIMIYAGAIVVLFVFVV 72

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M L I  E    R++    G++ + +L + LI+      VF   G  +       + + +
Sbjct: 73  MTLPISPESMT-RERASLRGAWPVPLLLSVLIIAP---FVFGEFGIAANTAAAPVSAQQV 128

Query: 135 GKVLYTQY 142
           G++L+  +
Sbjct: 129 GRLLFGPW 136


>gi|325269273|ref|ZP_08135891.1| NADH dehydrogenase subunit J [Prevotella multiformis DSM 16608]
 gi|324988400|gb|EGC20365.1| NADH dehydrogenase subunit J [Prevotella multiformis DSM 16608]
          Length = 179

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 19/175 (10%)

Query: 10  LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           +F+ +A++   S+   V+ +  + +  +L+F     AGL+ LL   F+  + + +Y G +
Sbjct: 6   MFAVLAVVILASAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAVQISIYAGGI 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFF-IGILAAELIVCASNFMVFSA--EGE 120
            + ++F I ++          +   KR  L +F  +   A  ++V   N ++ +   EG+
Sbjct: 66  TMMYIFAIQLVSKRTLQGLSERWLGKRTILAAFIALAGFATVVVVLLKNELIRNTVVEGD 125

Query: 121 -LSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRRD 170
            LSR +     ++ +G+ L +  +Y Y  P E     LL  +IG +V+ L H++ 
Sbjct: 126 SLSREL----TMDTVGQTLMSADKYGYVLPFEFISVFLLACIIGGLVI-LNHKKK 175


>gi|1171833|sp|P43193|NU6M_ALCTO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394660|emb|CAA52121.1| NADH dehydrogenase subunit 6 [Alca torda]
 gi|21104302|emb|CAC80344.1| NADH dehydrogenase subunit 6 [Alca torda]
          Length = 173

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1   MTYFMFFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYL 60

Query: 64  GAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           G ++V F++ + +  D   E     +  G+ G+ F+G+L   +++
Sbjct: 61  GGMLVVFVYSVSLAADPFPEAWGDWRVIGY-GAGFVGVLMVGMVI 104


>gi|1171837|sp|P43195|NU6M_BRAMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394664|emb|CAA52128.1| NADH dehydrogenase subunit 6 [Brachyramphus marmoratus]
          Length = 173

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|146277736|ref|YP_001167895.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555977|gb|ABP70590.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 164

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L     + +A+  + L VT    ++++  L+ A ++ AG F  LGA F   + +++Y
Sbjct: 1   MSDLSAIWCASVALACAILAVTRPAIVHALIWLVAALLSLAGCFFALGAGFAGAVQILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++  F+F++M  D   E     ++R  L   +    AA  +   +  +        +
Sbjct: 61  AGAIVAVFVFVVMTADASPEALA--RERARLAQGWRRPAAA--VGLVALPLALGLLAGGT 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH---RRD 170
                 ++  ++G +L+  +A  +E++  +LL +++GA     RH   RR+
Sbjct: 117 SPAAAPDSGPSLGAILFGPWAVAVEVASGLLLAALMGA-----RHLGRRRE 162


>gi|94490681|ref|YP_588197.1| NADH dehydrogenase subunit 6 [Phaethon rubricauda]
 gi|90990895|dbj|BAE92887.1| NADH dehydrogenase subunit 6 [Phaethon rubricauda]
          Length = 173

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVA 72

Query: 75 MMLDIDIEVAEPRKKRGF 92
          +  D   E    R+  G+
Sbjct: 73 LAADPFPEAWGDRQVMGY 90


>gi|13898636|gb|AAK48838.1| NADH dehydrogenase subunit 6 [Amazona ochrocephala oratrix]
          Length = 172

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++++ LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|16797936|gb|AAL29220.1| NADH dehydrogenase subunit 6 [Tringa totanus]
          Length = 173

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G +
Sbjct: 4  FVFLLGMCFVLGGLAVASNPSPYYGVVGLVLASVAECGWLLSLGVSFVSLVLFMVYLGGM 63

Query: 67 IVFFLF 72
          +V F++
Sbjct: 64 LVVFVY 69


>gi|288928303|ref|ZP_06422150.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331137|gb|EFC69721.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 173

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 17/174 (9%)

Query: 10  LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           +F  +A++   S+ + V  +  + +   L+F     AG++ LL   F+    + +Y G +
Sbjct: 6   MFCILAVVIIGSAIVCVFTKRIMRAATFLLFVLFGVAGVYFLLDYTFLGTAQIAIYAGGL 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRG---FLGSF--FIGILAAELIVCASNFMVFSA---E 118
            + ++F I ++          ++RG     G+    IG++   L++  + F+  SA   +
Sbjct: 66  TMLYIFAIQLVSKRTLQGLQERQRGKTVVAGALVALIGLVTVALVLLKNQFIDMSASMVD 125

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            E+   V  G  +   GK    QY  P E     LL  +IG I  M+  + D K
Sbjct: 126 AEVPMSVI-GEKIVGAGK---YQYVLPFEFISVFLLACIIGGI--MIARKEDKK 173


>gi|154818601|gb|ABS87782.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
          Length = 175

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 27/161 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV--------------- 131
             K   L  F  G+LA  L  C         EGE+  +VFK N                 
Sbjct: 85  SNKA-VLAMFITGVLAELLTAC-----YILKEGEV-EVVFKFNGAGDWVIYDTGDSGFFS 137

Query: 132 -ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            E +G   LY+   + + ++G+ LL   IG +V+M   R +
Sbjct: 138 EEAMGIAALYSYGTWLVVVTGWSLL---IGVLVIMEVTRGN 175


>gi|332669458|ref|YP_004452466.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas
           fimi ATCC 484]
 gi|332338496|gb|AEE45079.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas
           fimi ATCC 484]
          Length = 325

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 91/169 (53%), Gaps = 8/169 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + + ++++  ++  R  +++  +++   ++ A L++   A F+ ++ +VVY 
Sbjct: 26  ETVLFWVLAPIMVLAALGLLFARKAVHAALAVVVVMISLAFLYVAQDAVFLGVVQVVVYT 85

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGELS 122
           GAV++ FLF++M++ +D   +     R   G  +IG LA   L V  +  +  +A G  S
Sbjct: 86  GAVMMLFLFVLMLVGVDASDSLVETIR---GQRWIGALAGIGLGVVLAGVVGRAAYGP-S 141

Query: 123 RLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           + +   N   N   I  +++ +Y    E+ G +L+ + +GA+V   R R
Sbjct: 142 QGLDSANEASNPVAIAHLVFGEYVLAFEVVGALLVTAALGALVYTHRTR 190


>gi|154125715|ref|YP_001382258.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
 gi|151327685|gb|ABS00283.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
 gi|189342984|gb|ACD92015.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
 gi|189342998|gb|ACD92028.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
 gi|198387241|gb|ACH87083.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
 gi|291464811|gb|ADE05889.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
          Length = 173

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + +       AEP
Sbjct: 24 SPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77


>gi|11643311|gb|AAG39516.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643317|gb|AAG39519.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643321|gb|AAG39521.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643325|gb|AAG39523.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643327|gb|AAG39524.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643329|gb|AAG39525.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643333|gb|AAG39527.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
          Length = 172

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 29/182 (15%)

Query: 8   FYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F LF S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +V F++ +  L  D    E     G +G  F +G++           MV +    +  ++
Sbjct: 64  LVVFVYSV-SLAAD-PYPEAWGDWGVVGYGFGMGMV----------IMVGAVVSGVFEVL 111

Query: 126 FKGNNVENIG-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             G  V N+G            VLY+  A    I G+ LLL++     ++L   R + R 
Sbjct: 112 VDGGTVNNVGVSFVRSDFGGVAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRG 167

Query: 175 DI 176
            I
Sbjct: 168 AI 169


>gi|18643242|gb|AAL76252.1| NADH dehydrogenase subunit 6 [Gracula religiosa religiosa]
          Length = 83

 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          I+    V +  +P Y V  L+ A V   G  + LG  FVA++ ++VY+G ++V F++
Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVY 69


>gi|1171839|sp|P43196|NU6M_CALMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394670|emb|CAA52138.1| NADH dehydrogenase subunit 6 [Calidris maritima]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
           ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13  VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVC 108
           +  D   E     +  G+  SF +    G++   LI C
Sbjct: 73  LAADPFPEAWGDWRVVGYGASFILVVIAGMIVGGLIEC 110


>gi|13508744|emb|CAC35115.1| NADH dehydrogenase subunit 6 [Ficedula parva]
 gi|14268392|emb|CAC39330.1| NADH dehydrogenase subunit 6 [Ficedula parva]
          Length = 172

 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          I+    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 73 L------AAEPYPE 80


>gi|304322925|ref|YP_003856771.1| NADH dehydrogenase subunit 6 [Lynx rufus]
 gi|262232100|gb|ACY38382.1| NADH dehydrogenase subunit 6 [Lynx rufus]
          Length = 175

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG    GILA  L  C
Sbjct: 85  SNKA-VLGMLITGILAELLTAC 105


>gi|302632662|ref|YP_003848758.1| NADH dehydrogenase subunit 6 [Cuora pani]
 gi|259122043|gb|ACV92117.1| NADH dehydrogenase subunit 6 [Cuora pani]
          Length = 174

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63

Query: 67 IVFFLF 72
          +V F +
Sbjct: 64 LVIFAY 69


>gi|222479144|ref|YP_002565381.1| NADH dehydrogenase subunit J [Halorubrum lacusprofundi ATCC
          49239]
 gi|222452046|gb|ACM56311.1| NADH dehydrogenase subunit J [Halorubrum lacusprofundi ATCC
          49239]
          Length = 88

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          MV  ++ F LF+ + +     VV  R+  ++   L  A  + A  +++L AEF+A + ++
Sbjct: 1  MVYATIAFGLFAAVTLAFGLGVVLARDVFHAALLLGGALTSVAVHYVMLQAEFIAAMQIL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIE 82
          VYVG V++   F +M+   D E
Sbjct: 61 VYVGGVLILVTFAVMLTRSDTE 82


>gi|13898633|gb|AAK48836.1| NADH dehydrogenase subunit 6 [Amazona ochrocephala auropalliata]
          Length = 172

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++++ LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|239997790|gb|ACS37282.1| NADH dehydrogenase subunit 6 [Columba livia]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          +FF  FSF  ++    V +  +P Y V  L+ A V   G  L LG  F++++  +VY+G 
Sbjct: 5  VFFLGFSF--VLGGLGVASNPSPYYGVVGLVVASVTGCGWLLSLGVSFMSLVLFMVYLGG 62

Query: 66 VIVFFLF 72
          ++V F++
Sbjct: 63 MLVVFVY 69


>gi|190349341|ref|YP_001974591.1| NADH dehydrogenase subunit 6 [Cairina moschata]
 gi|189343012|gb|ACD92041.1| NADH dehydrogenase subunit 6 [Cairina moschata]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + +       AEP
Sbjct: 24 SPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77


>gi|13898639|gb|AAK48840.1| NADH dehydrogenase subunit 6 [Amazona farinosa]
          Length = 172

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++++ LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|331746935|ref|YP_004425083.1| NADH dehydrogenase subunit 6 [Anas formosa]
 gi|330369642|gb|AEC12187.1| NADH dehydrogenase subunit 6 [Anas formosa]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + +       AEP
Sbjct: 24 SPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77


>gi|295442710|ref|YP_003595316.1| NADH dehydrogenase subunit 6 [Cuora galbinifrons]
 gi|190148575|gb|ACE63319.1| NADH dehydrogenase subunit 6 [Cuora galbinifrons]
          Length = 174

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63

Query: 67 IVFFLF 72
          +V F +
Sbjct: 64 LVIFAY 69


>gi|161561751|ref|YP_001586147.1| NADH dehydrogenase subunit 6 [Rhynochetos jubatus]
 gi|143024744|gb|ABO93095.1| NADH dehydrogenase subunit 6 [Rhynochetos jubatus]
          Length = 172

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M SL  +L  +  ++ +  V +  +P Y V  L+ A +   G  L LG  FV+++  +VY
Sbjct: 1  MASLVLFLGGWF-VLGALAVASNPSPYYGVVGLVVASIAGCGWLLSLGVSFVSLVLFMVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP 86
          +G ++V F++ + +       AEP
Sbjct: 60 LGGMLVVFVYSVSL------AAEP 77


>gi|49146207|ref|YP_025987.1| NADH dehydrogenase subunit 6 [Anseranas semipalmata]
 gi|37960693|gb|AAP47792.1| NADH dehydrogenase subunit 6 [Anseranas semipalmata]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F +  S   ++ +  V +  +P Y V  L+ A V   G  L LGA FV++   +VY+
Sbjct: 1  MTYFVFFLSVCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLLSLGASFVSLALFMVYL 60

Query: 64 GAVIVFFLFIIMMLDIDIEVAEP 86
          G ++V F++ + +       AEP
Sbjct: 61 GGMLVVFVYSVSL------AAEP 77


>gi|71658035|ref|YP_271975.1| NADH dehydrogenase subunit 6 [Alectura lathami]
 gi|38048816|gb|AAR10289.1| NADH dehydrogenase subunit 6 [Alectura lathami]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 7  FFYLF---SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          +F LF   SFM  + S  V +  +P Y V  L+   V   G  L LG  FV+++  +VY+
Sbjct: 3  YFVLFLGVSFM--LGSLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGGSFVSLVLFMVYL 60

Query: 64 GAVIVFFLFIIMM 76
          G ++V F++ + +
Sbjct: 61 GGMLVVFVYSVAL 73


>gi|14141920|ref|NP_115375.1| NADH dehydrogenase subunit 6 [Anomalopteryx didiformis]
 gi|14039598|gb|AAK53332.1|AF338714_1 NADH dehydrogenase subunit VI [Anomalopteryx didiformis]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          I+ +  V +  +P Y V  L+   V   G  L LGA F++++  +VY+G ++V F++
Sbjct: 13 ILGALAVASNPSPYYGVLGLVVGSVMGCGWLLSLGASFISLVLFLVYLGGMLVVFVY 69


>gi|156142566|gb|ABU52048.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|156142518|gb|ABU52024.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142520|gb|ABU52025.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|326772142|ref|ZP_08231427.1| NADH dehydrogenase I, J subunit [Actinomyces viscosus C505]
 gi|326638275|gb|EGE39176.1| NADH dehydrogenase I, J subunit [Actinomyces viscosus C505]
          Length = 328

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 83/173 (47%), Gaps = 16/173 (9%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F + + + +     V+T +  + +  ++I   ++ A L+++  + F+ +  +VVY 
Sbjct: 22  EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 81

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+   LF+IM++ +  +  EP    G +    + IL    +  A   +V+ +      
Sbjct: 82  GAVMTLVLFVIMLVGVGGD--EPVGAAGTVMRRPVLILLGLGLAGALTAVVWRS------ 133

Query: 124 LVFKGNNVENIGK--------VLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            + K   +++  K         LY  +   +E++  +L+++ +GA+ L  R R
Sbjct: 134 TLPKPAGLKDGAKAAPDLLAVTLYHDHVVTMELTAILLIVAAVGALTLTHRQR 186


>gi|333025063|ref|ZP_08453127.1| putative NADH dehydrogenase subunit I J [Streptomyces sp. Tu6071]
 gi|332744915|gb|EGJ75356.1| putative NADH dehydrogenase subunit I J [Streptomyces sp. Tu6071]
          Length = 211

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 46 FLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
          +LLL AEF+A + +++YVG+V+V  LF +M+    I  ++    R
Sbjct: 18 YLLLTAEFIAWVQVLIYVGSVVVLLLFGLMLTRAPIGRSDDADSR 62


>gi|19481576|gb|AAL88860.1|AF407127_1 NADH dehydrogenase subunit 6 [Petronia dentata]
          Length = 159

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 13/121 (10%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
           ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13  VLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           +  D   E  +     G+        L   L+V     MV    G +  L+  G  V N 
Sbjct: 73  LAADPYPEAWDSWGVAGY-------GLGMSLVV-----MVGLVMGGMGELLVSGGTVNNS 120

Query: 135 G 135
           G
Sbjct: 121 G 121


>gi|156142564|gb|ABU52047.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|5835945|ref|NP_008711.1|ND6_15091 NADH dehydrogenase subunit 6 [Aythya americana]
 gi|4887672|gb|AAD32264.1|AF090337_13 NADH dehydrogenase subunit 6 [Aythya americana]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + +       AEP
Sbjct: 24 SPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77


>gi|288926083|ref|ZP_06420011.1| NADH dehydrogenase I, subunit 6 [Prevotella buccae D17]
 gi|315608356|ref|ZP_07883345.1| NADH dehydrogenase I subunit 6 [Prevotella buccae ATCC 33574]
 gi|288337123|gb|EFC75481.1| NADH dehydrogenase I, subunit 6 [Prevotella buccae D17]
 gi|315249986|gb|EFU29986.1| NADH dehydrogenase I subunit 6 [Prevotella buccae ATCC 33574]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S+ + V  +  + +   L+F     AG++ LL   F+    + VY G + + ++F I ++
Sbjct: 17  SAVMCVMTKRIMRAATFLLFVLFGVAGIYFLLDYTFLGTAQIAVYAGGITMVYIFAIQLV 76

Query: 78  DIDI--EVAEPRKKRGFLGSF---FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
                  V E  K    LG      +G+    +++  + F+ F+A+  +  +        
Sbjct: 77  SKQTLQGVVERFKGSRVLGGAVVSLVGLATVVVVLLKNRFIDFAAQSAVGEIPMNTIGTA 136

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +G   Y QY  P E     LL  +IG I  M+  + D K
Sbjct: 137 LLGSEKY-QYVLPFEFISVFLLACIIGGI--MIARKEDDK 173


>gi|161561793|ref|YP_001586270.1| NADH dehydrogenase subunit 6 [Tachybaptus novaehollandiae]
 gi|143024869|gb|ABO93134.1| NADH dehydrogenase subunit 6 [Tachybaptus novaehollandiae]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|322422363|ref|YP_004221795.1| NADH dehydrogenase subunit 6 [Luscinia calliope]
 gi|316891673|gb|ADU57283.1| NADH dehydrogenase subunit 6 [Luscinia calliope]
          Length = 172

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 73 L------AAEPYPE 80


>gi|11643241|gb|AAG39481.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643243|gb|AAG39482.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643247|gb|AAG39484.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643249|gb|AAG39485.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643251|gb|AAG39486.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643253|gb|AAG39487.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643255|gb|AAG39488.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643257|gb|AAG39489.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643259|gb|AAG39490.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643261|gb|AAG39491.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643263|gb|AAG39492.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643265|gb|AAG39493.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643267|gb|AAG39494.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643269|gb|AAG39495.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643271|gb|AAG39496.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643273|gb|AAG39497.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643275|gb|AAG39498.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643277|gb|AAG39499.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643279|gb|AAG39500.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643281|gb|AAG39501.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643285|gb|AAG39503.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643287|gb|AAG39504.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643289|gb|AAG39505.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643291|gb|AAG39506.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643293|gb|AAG39507.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643295|gb|AAG39508.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643297|gb|AAG39509.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643299|gb|AAG39510.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643301|gb|AAG39511.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643303|gb|AAG39512.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643305|gb|AAG39513.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643307|gb|AAG39514.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643309|gb|AAG39515.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643313|gb|AAG39517.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643315|gb|AAG39518.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643319|gb|AAG39520.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643323|gb|AAG39522.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643331|gb|AAG39526.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643339|gb|AAG39530.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643341|gb|AAG39531.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643343|gb|AAG39532.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643345|gb|AAG39533.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643347|gb|AAG39534.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643349|gb|AAG39535.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643351|gb|AAG39536.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643353|gb|AAG39537.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643355|gb|AAG39538.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643357|gb|AAG39539.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643359|gb|AAG39540.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643365|gb|AAG39543.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643369|gb|AAG39545.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643373|gb|AAG39547.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643377|gb|AAG39549.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 29/182 (15%)

Query: 8   FYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F LF S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +V F++ +  L  D    E     G +G  F +G++   ++V A    VF        ++
Sbjct: 64  LVVFVYSV-SLAAD-PYPEAWGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVL 111

Query: 126 FKGNNVENIG-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             G  V N+G            VLY+  A    I G+ LLL++     ++L   R + R 
Sbjct: 112 VDGGTVNNVGVSFVRSDFGGVAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRG 167

Query: 175 DI 176
            I
Sbjct: 168 AI 169


>gi|2660572|emb|CAA71362.1| NADH deyhdrogenase subunit 6 [Ficedula albicollis]
 gi|2660578|emb|CAA71363.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata]
 gi|13508732|emb|CAC35109.1| NADH dehydrogenase subunit 6 [Ficedula albicollis]
 gi|13508735|emb|CAC35117.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata]
 gi|13508738|emb|CAC35119.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata]
 gi|13508741|emb|CAC35121.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
 gi|14268380|emb|CAC39331.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata]
 gi|14268382|emb|CAC39349.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
 gi|14268384|emb|CAC39350.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
 gi|14268386|emb|CAC39351.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
 gi|14268388|emb|CAC39352.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
 gi|14268390|emb|CAC39353.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
          Length = 172

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 73 L------AAEPYPE 80


>gi|84488690|ref|YP_448892.1| NADH dehydrogenase subunit 6 [Testudo kleinmanni]
 gi|67005717|gb|AAY62509.1| NADH dehydrogenase subunit 6 [Testudo kleinmanni]
          Length = 174

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y VFSL+       G+ + +G  FV++I  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKKR 90
          +V F +   +       AEP    
Sbjct: 64 LVIFAYSCAL------AAEPYPAS 81


>gi|1171843|sp|P43200|NU6M_FRAAR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394674|emb|CAA52134.1| NADH dehydrogenase subunit 6 [Fratercula arctica]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F +  S   ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1  MTYFVFFLSLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFVY 69


>gi|156142580|gb|ABU52055.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPXYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|156142536|gb|ABU52033.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142538|gb|ABU52034.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKKRGFLGSF 96
          +       AEP  +    GSF
Sbjct: 67 L------AAEPYPEA--WGSF 79


>gi|190349494|ref|YP_001974655.1| NADH dehydrogenase subunit 6 [Cyclemys atripons]
 gi|116518545|gb|ABJ99500.1| NADH dehydrogenase subunit 6 [Cyclemys atripons]
          Length = 174

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  F++++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGVLSGCGVLVSMGGSFISLVLFLIYLGGM 63

Query: 67 IVFFLF 72
          +V F +
Sbjct: 64 LVIFAY 69


>gi|11643363|gb|AAG39542.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643367|gb|AAG39544.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643375|gb|AAG39548.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643381|gb|AAG39551.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 29/182 (15%)

Query: 8   FYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F LF S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +V F++ +  L  D    E     G +G  F +G++   ++V A    VF        ++
Sbjct: 64  LVVFVYSV-SLAAD-PYPEAWGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVL 111

Query: 126 FKGNNVENIG-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             G  V N+G            VLY+  A    I G+ LLL++     ++L   R + R 
Sbjct: 112 VDGGTVNNVGVSFVRSDFGGVAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRG 167

Query: 175 DI 176
            I
Sbjct: 168 AI 169


>gi|156142554|gb|ABU52042.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142556|gb|ABU52043.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142582|gb|ABU52056.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKKRGFLGSF 96
          +       AEP  +    GSF
Sbjct: 67 L------AAEPYPEA--WGSF 79


>gi|16797923|gb|AAL29214.1| NADH dehydrogenase subunit 6 [Tringa glareola]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 36/69 (52%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F +L     ++    V +  +P Y V  L+ A +   G  L LG  FV+++  +VY+
Sbjct: 1  MTYFVFLLGLCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLLSLGISFVSLVLFMVYL 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFVY 69


>gi|156142592|gb|ABU52061.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142594|gb|ABU52062.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142596|gb|ABU52063.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|240266670|ref|YP_002971046.1| NADH dehydrogenase subunit 6 [Dendrocygna javanica]
 gi|209887475|gb|ACI95091.1| NADH dehydrogenase subunit 6 [Dendrocygna javanica]
          Length = 173

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  L LG  F++++  +VY+G ++V F++ + +       AEP
Sbjct: 24 SPYYGVVGLVLASVAGCGWLLSLGVSFISLVLFMVYLGGMLVVFVYSVAL------AAEP 77

Query: 87 RKK 89
            K
Sbjct: 78 FPK 80


>gi|108793517|ref|YP_637113.1| NADH dehydrogenase subunit 6 [Podiceps cristatus]
 gi|108755535|dbj|BAE95766.1| NADH dehydrogenase subunit 6 [Podiceps cristatus]
          Length = 173

 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|1171844|sp|P43201|NU6M_FRACR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394676|emb|CAA52135.1| NADH dehydrogenase subunit 6 [Fratercula corniculata]
          Length = 173

 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F +  S   ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1  MTYFVFFLSLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFVY 69


>gi|156142576|gb|ABU52053.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142578|gb|ABU52054.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142598|gb|ABU52064.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|156142524|gb|ABU52027.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|134034933|ref|YP_001096532.1| NADH dehydrogenase subunit 6 [Melopsittacus undulatus]
 gi|133712157|gb|ABO36795.1| NADH dehydrogenase subunit 6 [Melopsittacus undulatus]
          Length = 169

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++++ LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|138892609|ref|YP_001127589.1| NADH dehydrogenase subunit 6 [Mauremys mutica]
 gi|90576894|gb|ABD95490.1| NADH dehydrogenase subunit 6 [Mauremys mutica]
          Length = 174

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVGMGGSFVSLVLFLIYLGGM 63

Query: 67 IVFF 70
          +V F
Sbjct: 64 LVIF 67


>gi|116734813|ref|YP_842411.1| NADH dehydrogenase subunit 6 [Pteroglossus azara flavirostris]
 gi|109676670|gb|ABG37758.1| NADH dehydrogenase subunit 6 [Pteroglossus azara flavirostris]
          Length = 173

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+FA V   G  + LG  FV ++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVMGLVFASVVGCGWLVSLGMSFVGLVLFMVYLGGMLVVFVY 69


>gi|84488719|ref|YP_448778.1| NADH dehydrogenase subunit 6 [Cygnus columbianus]
 gi|67005520|gb|AAY62378.1| NADH dehydrogenase subunit 6 [Cygnus columbianus]
          Length = 173

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + +       AEP
Sbjct: 24 SPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77


>gi|20090361|ref|NP_616436.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina acetivorans
           C2A]
 gi|19915366|gb|AAM04916.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina acetivorans
           C2A]
          Length = 86

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           EL       +N++ IG +++TQY  P E+   +LL S+IGAI
Sbjct: 36  ELPENPADPSNIQGIGMLIFTQYVVPFEVLSIVLLASLIGAI 77


>gi|323345261|ref|ZP_08085484.1| NADH-quinone oxidoreductase subunit J [Prevotella oralis ATCC
           33269]
 gi|323093375|gb|EFZ35953.1| NADH-quinone oxidoreductase subunit J [Prevotella oralis ATCC
           33269]
          Length = 173

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 10/173 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + S + + S+ + V  +  + +   LIF     AGL+ LL   ++    + +Y G 
Sbjct: 5   IMFCILSVVILGSAIMCVMTKRIMRAATFLIFVLFGVAGLYFLLDYTYLGAAQISIYAGG 64

Query: 66  VIVFFLFIIMMLDIDI------EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           + V ++F I ++           +   R   G L S F G+    +++  + F+  SA  
Sbjct: 65  ITVLYIFAIQLVSKRTLQGLVERIKGSRLIAGLLVSLF-GLATVVIVLLKNKFLDMSASV 123

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
             + +         +G   Y QY  P E     LL  +IG   LM+  + D K
Sbjct: 124 SDTEVPMNTIGTALVGSEKY-QYVLPFEFISVFLLACIIGG--LMIARKEDKK 173


>gi|169595820|ref|XP_001791334.1| hypothetical protein SNOG_00653 [Phaeosphaeria nodorum SN15]
 gi|111071028|gb|EAT92148.1| hypothetical protein SNOG_00653 [Phaeosphaeria nodorum SN15]
          Length = 688

 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 14/135 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVV-----YVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           SL+FA      L L +       I   +     Y+ + ++  L I+  L +  E+ +PR+
Sbjct: 96  SLVFALTANMSLLLNMARRLSFAIAQPITILGWYLSSALLIALVIVASLPV-FEI-QPRQ 153

Query: 89  KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
           +     +++ GI+AA L    ++ M F+A G      ++G+  ++  ++  +Q    L+ 
Sbjct: 154 EHALSQAYYYGIIAAALYFIVASLMAFTAYG-----AWRGHYSKDF-QLTPSQRTLMLQT 207

Query: 149 SGFILLLSMIGAIVL 163
            GF++ L ++GA+V 
Sbjct: 208 IGFMVYL-LLGALVF 221


>gi|40388207|gb|AAQ91105.1| NADH dehydrogenase subunit 6 [Acanthisitta chloris]
          Length = 173

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 7  FFYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          +F LF S   I+    V +  +P Y V  L+   V   G  L LG  FV+++  +VY+G 
Sbjct: 3  YFVLFLSLCFILGGLAVASSPSPYYGVVGLVLGAVAGCGWLLSLGVSFVSLVLFMVYLGG 62

Query: 66 VIVFFLF 72
          ++V F++
Sbjct: 63 MLVVFVY 69


>gi|325126943|ref|YP_004286178.1| NADH dehydrogenase subunit 6 [Geotrygon violacea]
 gi|304365571|gb|ADM26376.1| NADH dehydrogenase subunit 6 [Geotrygon violacea]
          Length = 173

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++
Sbjct: 24 SPYYGVVGLVAASVTGCGWLLSLGVSFVALVLFMVYLGGMLVVFVY 69


>gi|222839266|ref|YP_002586999.1| NADH dehydrogenase subunit 6 [Cuora flavomarginata]
 gi|188503898|gb|ACD56043.1| NADH dehydrogenase subunit 6 [Cuora flavomarginata]
          Length = 174

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVGMGGSFVSLVLFLIYLGGM 63

Query: 67 IVFFLF 72
          +V F +
Sbjct: 64 LVIFAY 69


>gi|19343500|ref|NP_597966.1| NADH dehydrogenase subunit 6 [Ursus americanus]
 gi|19110556|gb|AAL85166.1|AF303109_12 NADH dehydrogenase subunit 6 [Ursus americanus]
          Length = 175

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEAWV 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F +G+L+  LI C
Sbjct: 85  SNKA-VLGAFIVGLLSELLIAC 105


>gi|13116563|ref|NP_076842.1| NADH dehydrogenase subunit 6 [Dinornis giganteus]
 gi|12957439|gb|AAK07714.1| NADH dehydrogenase subunit 6 [Dinornis giganteus]
          Length = 173

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          I+ +  V +  +P Y V  L+   V   G  L LGA F++++  +VY+G ++V F++
Sbjct: 13 ILGALAVASNPSPYYGVLGLVVGSVMGCGWLLSLGASFISLVLFLVYLGGMLVVFVY 69


>gi|84488704|ref|YP_448879.1| NADH dehydrogenase subunit 6 [Testudo marginata]
 gi|67005703|gb|AAY62496.1| NADH dehydrogenase subunit 6 [Testudo marginata]
          Length = 174

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y VFSL+       G+ + +G  FV++I  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFMIYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F +   +       AEP   
Sbjct: 64 LVIFAYSCAL------AAEPYPA 80


>gi|67005619|gb|AAY62418.1| NADH dehydrogenase subunit 6 [Testudo graeca]
          Length = 174

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y VFSL+       G+ + +G  FV++I  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F +   +       AEP   
Sbjct: 64 MVIFAYSCAL------AAEPYPA 80


>gi|260912214|ref|ZP_05918766.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633648|gb|EEX51786.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295]
          Length = 173

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 17/174 (9%)

Query: 10  LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           +F  +A++   S+ + V  +  + +   L+F     AG++ LL   F+    + +Y G +
Sbjct: 6   MFCILAVVIIGSAIVCVFTKRIMRAATFLLFVLFGVAGVYFLLDYTFLGTAQIAIYAGGL 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRG---FLGSF--FIGILAAELIVCASNFMVFSA---E 118
            + ++F I ++          ++RG     G+    IG++   L++  + F+  SA   +
Sbjct: 66  TMLYIFAIQLVSKRTLQGLQERQRGKTVVAGALVALIGLVTVALVLLKNQFIDMSASMVD 125

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            E+   V  G  +   GK    QY  P E     LL  +IG I  M+  + D K
Sbjct: 126 AEVPMSVI-GEKLVGAGK---YQYVLPFEFISVFLLACIIGGI--MIARKEDKK 173


>gi|154818546|gb|ABS87741.1| NADH dehydrogenase subunit 6 [Felis margarita]
 gi|154818550|gb|ABS87744.1| NADH dehydrogenase subunit 6 [Felis margarita]
 gi|154818554|gb|ABS87747.1| NADH dehydrogenase subunit 6 [Felis margarita]
 gi|154818558|gb|ABS87750.1| NADH dehydrogenase subunit 6 [Felis margarita]
 gi|154818645|gb|ABS87815.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|155624512|gb|ABU24596.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624571|gb|ABU24640.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624731|gb|ABU24760.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 85  SNKA-VLAMFITGVLAELLTAC 105


>gi|156142510|gb|ABU52020.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142522|gb|ABU52026.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|15897267|ref|NP_341872.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus P2]
 gi|284174516|ref|ZP_06388485.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus 98/2]
 gi|13813472|gb|AAK40662.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus P2]
 gi|261601936|gb|ACX91539.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           solfataricus 98/2]
          Length = 167

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 15/172 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT--- 58
           ++Q + F  F  M I  S  +V  +N  Y   SL F  ++ A L  L       + +   
Sbjct: 8   IIQYILFGFFGVMTIAFSIYIVRAKNVFYGAVSLAFLGLSIAALIALEAPSTYGIYSVFH 67

Query: 59  LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           +++YVGA + F    ++M   D+EV   +  RG LG     ILA   +      +VF + 
Sbjct: 68  ILLYVGATVTFLAISLVMFK-DLEV---KFGRGALG-----ILAGGAVTLLFLIIVFISI 118

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            ++S    +  N + +   L   Y +PL I    LL ++I AI L    RRD
Sbjct: 119 PQVSSAEVQPINFQVLANDLIENYWFPLIILVIALLTTLIEAISL---ARRD 167


>gi|122056419|gb|ABM66076.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056421|gb|ABM66077.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056423|gb|ABM66078.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056425|gb|ABM66079.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056427|gb|ABM66080.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056429|gb|ABM66081.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056431|gb|ABM66082.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056433|gb|ABM66083.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056435|gb|ABM66084.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
          Length = 172

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + +       AEP
Sbjct: 23 SPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 76


>gi|322369191|ref|ZP_08043756.1| NADH dehydrogenase subunit J [Haladaptatus paucihalophilus DX253]
 gi|320550923|gb|EFW92572.1| NADH dehydrogenase subunit J [Haladaptatus paucihalophilus DX253]
          Length = 88

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 45/76 (59%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M  + + F LF+ + + SS   V VR+  +S   L  + ++ A  +++L AEFVA + ++
Sbjct: 1  MAYEMIAFALFAILTVASSVGAVLVRDVWHSALLLGASLLSFAAHYVMLQAEFVAAMQIL 60

Query: 61 VYVGAVIVFFLFIIMM 76
          VYVG V++   F +M+
Sbjct: 61 VYVGGVLILITFAVML 76


>gi|14141960|ref|NP_115401.1|ND6_15669 NADH dehydrogenase subunit 6 [Tinamus major]
 gi|14039506|gb|AAK53254.1|AF338707_13 NADH dehydrogenase subunit VI [Tinamus major]
          Length = 173

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 9  YLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          Y  SF+ +   + +  V +  +P Y V  L+   V   G  L LG  FV+++  +VY+G 
Sbjct: 3  YFVSFLGVCFVLGALAVASNPSPQYGVMGLVMGSVVGCGWLLSLGVSFVSLVLFLVYLGG 62

Query: 66 VIVFFLFIIMMLDIDIEVAEP 86
          ++V F++ + +       AEP
Sbjct: 63 MLVVFVYCVSL------AAEP 77


>gi|18077894|ref|NP_542241.1| NADH dehydrogenase subunit 6 [Tachyglossus aculeatus]
 gi|75054233|sp|Q8W9G2|NU6M_TACAC RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|17932776|emb|CAC88021.1| NADH dehydrogenase subunit 6 [Tachyglossus aculeatus]
          Length = 166

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F YL S M ++S     +  +PIY   SL+ +     G+ + LG  F+ +I  +VY+G +
Sbjct: 4  FIYLLSVMLVLSFMAFASNPSPIYGGLSLVLSGGVGCGIIVSLGGSFLGLIVFLVYLGGM 63

Query: 67 IVFF 70
          +V F
Sbjct: 64 LVVF 67


>gi|322422853|ref|YP_004222722.1| NADH dehydrogenase subunit 6 [Leiothrix argentauris]
 gi|316891659|gb|ADU57270.1| NADH dehydrogenase subunit 6 [Leiothrix argentauris]
          Length = 172

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A +   G  + LGA FV+++ L+VY+G ++V F++
Sbjct: 13 VLGGLAVSSNPSPYYGVVGLVVASIAGCGWLVSLGASFVSLVLLMVYLGGMLVVFVY 69


>gi|49146725|ref|YP_025961.1| NADH dehydrogenase subunit 6 [Strigops habroptilus]
 gi|37960707|gb|AAP47805.1| NADH dehydrogenase subunit 6 [Strigops habroptilus]
          Length = 171

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 35/57 (61%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++++  V +  +P Y V  L+F  +   G  + LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLAALAVASNPSPYYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|326535880|ref|YP_004300328.1| NADH dehydrogenase subunit 6 [Cyanoptila cyanomelana]
 gi|325305630|gb|ADZ10796.1| NADH dehydrogenase subunit 6 [Cyanoptila cyanomelana]
          Length = 172

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 73 L------AAEPYPE 80


>gi|327492707|ref|YP_004347598.1| NADH dehydrogenase subunit 6 [Tetractenos glaber]
 gi|327392600|dbj|BAK10027.1| NADH dehydrogenase subunit 6 [Tetractenos glaber]
          Length = 173

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 28 PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-IIMMLDIDIEVAEP 86
          P Y VFSL+   +   G+ +L G  F++++ L++Y+G ++V F++   +  D D EV   
Sbjct: 25 PFYGVFSLVLLALYCCGVLVLHGGAFLSLVLLMIYMGGMLVVFIYSSALSADKDPEVPSG 84

Query: 87 RKK 89
           + 
Sbjct: 85 WQA 87


>gi|330834248|ref|YP_004408976.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Metallosphaera cuprina Ar-4]
 gi|329566387|gb|AEB94492.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Metallosphaera cuprina Ar-4]
          Length = 154

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 18/166 (10%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT---LVVYVGAV 66
           LFS +A+ ++  +V  +N  YS  SL F  ++ A L   +     ++ +   L++YVGA 
Sbjct: 2   LFSILALATALFIVNSKNVFYSAVSLAFLGISVAVLIADINPAAYSLYSAFHLILYVGAT 61

Query: 67  IVFF-LFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +VF  + ++M   +++ EV  P      L         A L++  S+    +  G   +L
Sbjct: 62  VVFLSISLVMFRGLEVKEVKTPWAPS--LAIVAAIAFFAVLVLSTSS---ITPSGTPEQL 116

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                N+  +G+ L +QY +P  I    LL +MI A+ L    RRD
Sbjct: 117 -----NLAVVGEKLISQYWFPTFILIVALLTTMIEALSL---ARRD 154


>gi|156142534|gb|ABU52032.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|156142570|gb|ABU52050.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142572|gb|ABU52051.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|156142568|gb|ABU52049.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|164422160|ref|YP_001648831.1| NADH dehydrogenase subunit 6 [Sylvia atricapilla]
 gi|164414706|emb|CAP10133.1| NADH dehydrogenase subunit 6 [Sylvia atricapilla]
          Length = 172

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 28/162 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A V   G  + LG  FV++  ++VY+G ++V F++ + +       A+P
Sbjct: 24  SPYYGVIGLVIASVVGCGWLVSLGVSFVSLALIMVYLGGMLVVFVYSVSL------AADP 77

Query: 87  -RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135
             +  G  G  + G++   ++      MV    GE+  ++     V+N G          
Sbjct: 78  YPEGWGDWGVVWYGLVMGLVV------MVGGTIGEVFGVLVDVGTVDNGGLSLVRLDFSG 131

Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             VLY+     L + G+ LLL++     ++L   R + R  I
Sbjct: 132 VAVLYSWGVGLLMVGGWGLLLTLF----VVLELVRGLSRGAI 169


>gi|155624671|gb|ABU24715.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 85  SNKA-VLAMFITGVLAELLTAC 105


>gi|155624803|gb|ABU24814.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 85  SNKA-VLAMFITGVLAQLLTAC 105


>gi|326535925|ref|YP_004300369.1| NADH dehydrogenase subunit 6 [Gallinula chloropus]
 gi|325305661|gb|ADZ10824.1| NADH dehydrogenase subunit 6 [Gallinula chloropus]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 19/158 (12%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-IIMMLDIDIEVAE 85
           +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V FL+ + +  D+  E   
Sbjct: 24  SPYYGVVGLVLASVVGCGWLLSLGLSFVSLVLFMVYLGGMLVVFLYSVSLAADLYPEGWG 83

Query: 86  PRKKRGF-LG---SFFIGILAAELIVCASNFMVFSAE--GELS-RLVFKGNNVENIGKVL 138
             +  G+ LG      +G+    L+ C   F V + +  G LS RL F G        VL
Sbjct: 84  DWRVMGYILGLILVLVVGLSVGGLVEC-WKFGVVTVDSVGVLSVRLDFSGV------AVL 136

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           Y+       ++G+ LLL++     ++L   R + R  I
Sbjct: 137 YSWGVGVFLVAGWGLLLTLF----VVLELVRGLGRGAI 170


>gi|157488883|gb|ABV57845.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|11643283|gb|AAG39502.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
          Length = 172

 Score = 36.2 bits (82), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 28/173 (16%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13  VLGGLAVASNPSPYYGVLGLVVASIAGWGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV- 71

Query: 76  MLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
            L  D    E     G +G  F +G++   ++V A    VF        ++  G  V N+
Sbjct: 72  SLAAD-PYPEAWGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVLVDGGTVNNV 120

Query: 135 G-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           G            VLY+  A    I G+ LLL++     ++L   R + R  I
Sbjct: 121 GVSFVRSDFGGVAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169


>gi|121582447|ref|YP_980176.1| NADH dehydrogenase subunit 6 [Takydromus tachydromoides]
 gi|121309345|dbj|BAF43964.1| NADH dehydrogenase subunit 6 [Takydromus tachydromoides]
          Length = 171

 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 17/161 (10%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P +   SL+ A     GL +LLG+ FV+++ L++Y+G ++V F + + +   D 
Sbjct: 19  VASNPSPYFGAGSLVVAASFGCGLLVLLGSSFVSLVLLLIYLGGMLVVFAYSVALAS-DP 77

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS------RLVFKGNNVENIG 135
                    G+ G++ + +    L +  + F+ F   G  S      RL   G       
Sbjct: 78  YPESWGNVWGYFGAYVVMVFFLVLSLGDAGFVGFGVMGADSCGLSVVRLDLSGV------ 131

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +LY    + L I G+ LLL++     ++L   R + R  +
Sbjct: 132 PLLYNLGGFGLLICGWALLLTLF----VVLELTRGLMRGSL 168


>gi|119719991|ref|YP_920486.1| NADH-plastoquinone oxidoreductase subunit 6 [Thermofilum pendens
           Hrk 5]
 gi|119525111|gb|ABL78483.1| conserved hypothetical NADH-plastoquinone oxidoreductase subunit 6
           [Thermofilum pendens Hrk 5]
          Length = 161

 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A+ SS L V V+   Y+   L F  ++ A L  LLG  +VA+   +VYVGA ++F +  
Sbjct: 15  VAVASSLLAVKVKEDFYAAVLLGFVGLSVASLIALLGFTYVAVFHALVYVGATVLFVIMG 74

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           ++ +   +         G L S F G L
Sbjct: 75  VIFIGRGLGYERRMLAAGVLTSVFAGSL 102


>gi|19481586|gb|AAL88865.1|AF407132_1 NADH dehydrogenase subunit 6 [Scaphidura oryzivora]
          Length = 159

 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       A+P  +
Sbjct: 73 L------AADPYPE 80


>gi|11643361|gb|AAG39541.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643371|gb|AAG39546.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643379|gb|AAG39550.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643383|gb|AAG39552.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643385|gb|AAG39553.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643387|gb|AAG39554.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643389|gb|AAG39555.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643391|gb|AAG39556.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643393|gb|AAG39557.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643395|gb|AAG39558.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643397|gb|AAG39559.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643399|gb|AAG39560.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643401|gb|AAG39561.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643405|gb|AAG39563.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643407|gb|AAG39564.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643409|gb|AAG39565.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643411|gb|AAG39566.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643415|gb|AAG39568.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643417|gb|AAG39569.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643421|gb|AAG39571.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643423|gb|AAG39572.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643429|gb|AAG39575.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643431|gb|AAG39576.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643433|gb|AAG39577.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643435|gb|AAG39578.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643437|gb|AAG39579.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643439|gb|AAG39580.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643441|gb|AAG39581.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643443|gb|AAG39582.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643445|gb|AAG39583.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643447|gb|AAG39584.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643449|gb|AAG39585.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643451|gb|AAG39586.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus]
 gi|11643453|gb|AAG39587.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus]
 gi|11643455|gb|AAG39588.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus]
 gi|11643457|gb|AAG39589.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus]
 gi|11643459|gb|AAG39590.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus]
          Length = 172

 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 20/158 (12%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ +  L  D    E 
Sbjct: 24  SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV-SLAAD-PYPEA 81

Query: 87  RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------RLVFKGNNVENIGKVL 138
               G +G  F +G++     V +  F V    G ++       RL F G        VL
Sbjct: 82  WGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTVNNVGVSFIRLDFGGA------AVL 135

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           Y+  A    I G+ LLL++     ++L   R + R  I
Sbjct: 136 YSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169


>gi|289183160|ref|YP_003457147.1| NADH dehydrogenase subunit 6 [Ophiocomina nigra]
 gi|288995517|emb|CBH40121.1| NADH dehydrogenase subunit 6 [Ophiocomina nigra]
          Length = 152

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 73/149 (48%), Gaps = 11/149 (7%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P +SVF ++   ++ + +F L G  F +++ +++Y G ++V FLF  ++       AE 
Sbjct: 13  SPYFSVFGILVQALSLSIIFCLFGFPFFSLLLILIYAGGMLVVFLFSTLL------TAE- 65

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN-IGKVLYTQYAYP 145
           R     +    +  L + +++     +V+S E  ++ L F G N E  +G +     A  
Sbjct: 66  RHPESIVQEIVLFGLGSMIVIVP---LVYSWETPVNSLSFVGLNQEMLLGNLFSVPLAIV 122

Query: 146 LEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             +  F+LL++++G + +   H     R+
Sbjct: 123 TCVVAFVLLIALMGVLSINFEHTYSNLRK 151


>gi|164449790|ref|YP_001648844.1| NADH dehydrogenase subunit 6 [Sylvia crassirostris]
 gi|164414720|emb|CAP10146.1| NADH dehydrogenase subunit 6 [Sylvia crassirostris]
          Length = 172

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          SLFF       ++  + V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G
Sbjct: 9  SLFF-------VLGGWAVASNPSPYYGVVGLVVASVAGCGWLVSLGVSFVSLVLVMVYLG 61

Query: 65 AVIVFFLF 72
           ++V F++
Sbjct: 62 GMLVVFVY 69


>gi|195934708|ref|YP_002120644.1| NADH dehydrogenase subunit 6 [Ailurus fulgens]
 gi|155368567|emb|CAM98583.1| NADH dehydrogenase subunit 6 [Ailurus fulgens]
          Length = 175

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 27/161 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIVSGAVGCGIILSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV--------------- 131
             K   LG+F +G+L+  L  C   +++   EGE   +VFK N +               
Sbjct: 85  SNKA-VLGAFILGLLSELLTAC---YILKDDEGE---VVFKFNGMGDWVIYDTGDSGFFS 137

Query: 132 -ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            E +G   LY+   + + ++G+ LL   IG +V+M   R +
Sbjct: 138 EEAMGIAALYSYGTWLVVVTGWSLL---IGVLVIMEVTRGN 175


>gi|115531621|ref|YP_784007.1| NADH dehydrogenase subunit 6 [Neofelis nebulosa]
 gi|78157547|gb|ABB22891.1| NADH dehydrogenase subunit 6 [Neofelis nebulosa]
          Length = 175

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A      + L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGVGCAIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG F  G+LA  L  C
Sbjct: 85  SNKA-VLGMFITGVLAELLTAC 105


>gi|156142530|gb|ABU52030.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|155624532|gb|ABU24611.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 15/155 (9%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSRLVFKGNNV-----ENIG- 135
             K   L  F  G+LA  L  C         +VF   G    +++   +      E +G 
Sbjct: 85  SNKA-VLAMFITGVLAELLTACYILKEDEVEVVFKFNGAGDWVIYDTGDSGFFSEEAMGI 143

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             LY+   + + I+G+ LL   IG +V+M   R +
Sbjct: 144 AALYSYGTWLVVITGWSLL---IGVLVIMEVTRGN 175


>gi|157488887|gb|ABV57847.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|157488865|gb|ABV57836.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488867|gb|ABV57837.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488869|gb|ABV57838.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488871|gb|ABV57839.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488873|gb|ABV57840.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488877|gb|ABV57842.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488879|gb|ABV57843.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488881|gb|ABV57844.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488885|gb|ABV57846.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488891|gb|ABV57849.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488893|gb|ABV57850.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488895|gb|ABV57851.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488897|gb|ABV57852.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488899|gb|ABV57853.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488905|gb|ABV57856.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488909|gb|ABV57858.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488911|gb|ABV57859.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488913|gb|ABV57860.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|154818480|gb|ABS87692.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra]
 gi|154818484|gb|ABS87695.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra]
 gi|154818488|gb|ABS87698.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra]
 gi|154818506|gb|ABS87711.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra]
 gi|154818514|gb|ABS87717.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra]
 gi|154818518|gb|ABS87720.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818526|gb|ABS87726.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818530|gb|ABS87729.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818534|gb|ABS87732.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818538|gb|ABS87735.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818542|gb|ABS87738.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818570|gb|ABS87759.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818574|gb|ABS87762.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818578|gb|ABS87765.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818582|gb|ABS87768.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818593|gb|ABS87776.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818597|gb|ABS87779.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818605|gb|ABS87785.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818609|gb|ABS87788.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818613|gb|ABS87791.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818617|gb|ABS87794.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818621|gb|ABS87797.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818625|gb|ABS87800.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818629|gb|ABS87803.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818633|gb|ABS87806.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818637|gb|ABS87809.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818641|gb|ABS87812.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818649|gb|ABS87818.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818653|gb|ABS87821.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|155624348|gb|ABU24473.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624352|gb|ABU24476.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624356|gb|ABU24479.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624360|gb|ABU24482.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624364|gb|ABU24485.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624368|gb|ABU24488.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624372|gb|ABU24491.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624376|gb|ABU24494.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624384|gb|ABU24500.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624388|gb|ABU24503.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624392|gb|ABU24506.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624396|gb|ABU24509.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624400|gb|ABU24512.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624404|gb|ABU24515.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624408|gb|ABU24518.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624412|gb|ABU24521.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624416|gb|ABU24524.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624420|gb|ABU24527.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624424|gb|ABU24530.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624428|gb|ABU24533.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624432|gb|ABU24536.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624436|gb|ABU24539.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624440|gb|ABU24542.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624444|gb|ABU24545.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624448|gb|ABU24548.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624456|gb|ABU24554.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624464|gb|ABU24560.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624468|gb|ABU24563.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624472|gb|ABU24566.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624476|gb|ABU24569.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624480|gb|ABU24572.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624484|gb|ABU24575.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624488|gb|ABU24578.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624492|gb|ABU24581.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624496|gb|ABU24584.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624500|gb|ABU24587.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624504|gb|ABU24590.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624508|gb|ABU24593.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624516|gb|ABU24599.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624524|gb|ABU24605.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624528|gb|ABU24608.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624536|gb|ABU24614.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624540|gb|ABU24617.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624544|gb|ABU24620.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624548|gb|ABU24623.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624555|gb|ABU24628.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624559|gb|ABU24631.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624575|gb|ABU24643.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624595|gb|ABU24658.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624611|gb|ABU24670.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624615|gb|ABU24673.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624627|gb|ABU24682.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624631|gb|ABU24685.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624635|gb|ABU24688.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624639|gb|ABU24691.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624647|gb|ABU24697.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624655|gb|ABU24703.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624659|gb|ABU24706.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624663|gb|ABU24709.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624667|gb|ABU24712.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624675|gb|ABU24718.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624679|gb|ABU24721.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624687|gb|ABU24727.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624695|gb|ABU24733.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624703|gb|ABU24739.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624711|gb|ABU24745.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624715|gb|ABU24748.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624719|gb|ABU24751.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624723|gb|ABU24754.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624727|gb|ABU24757.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624735|gb|ABU24763.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624739|gb|ABU24766.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624743|gb|ABU24769.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624747|gb|ABU24772.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624751|gb|ABU24775.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624755|gb|ABU24778.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624763|gb|ABU24784.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624767|gb|ABU24787.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624771|gb|ABU24790.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624775|gb|ABU24793.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624779|gb|ABU24796.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624783|gb|ABU24799.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624787|gb|ABU24802.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624791|gb|ABU24805.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624811|gb|ABU24820.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 85  SNKA-VLAMFITGVLAELLTAC 105


>gi|156142512|gb|ABU52021.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142514|gb|ABU52022.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142516|gb|ABU52023.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142528|gb|ABU52029.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142544|gb|ABU52037.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142550|gb|ABU52040.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142552|gb|ABU52041.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142558|gb|ABU52044.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142560|gb|ABU52045.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142562|gb|ABU52046.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142586|gb|ABU52058.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|154818566|gb|ABS87756.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
          Length = 175

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 85  SNKA-VLAMFITGVLAELLTAC 105


>gi|126792865|gb|ABO27284.1| NADH dehydrogenase subunit 6 [Brotogeris chiriri]
          Length = 167

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++++ LV +  +P Y    L+F  V   G  + LGA FVA+   +VY+G ++V F++
Sbjct: 13 VLAALLVASNPSPYYGAVGLVFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVY 69


>gi|157488901|gb|ABV57854.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488903|gb|ABV57855.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488907|gb|ABV57857.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|37596525|gb|AAQ95023.1| NADH dehydrogenase subunit 6 [Amadina erythrocephala]
          Length = 159

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 20/141 (14%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F  F F  ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2   MEFVLFLGFCF--VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSA 117
           +G ++V F++ + +       A+P  +     G +G SF +G++     V    F V   
Sbjct: 60  LGGMLVVFVYSVSL------AADPYPESWVDWGVVGYSFGMGLVVMVGFVIGGVFEVLVD 113

Query: 118 EGELS-------RLVFKGNNV 131
           EG +S       RL F G +V
Sbjct: 114 EGTVSGGGLLSTRLDFSGVSV 134


>gi|19481582|gb|AAL88863.1|AF407130_1 NADH dehydrogenase subunit 6 [Junco hyemalis]
          Length = 159

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +
Sbjct: 14 LGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLIMVYLGGMLVVFVYSVSL 73

Query: 77 LDIDIEVAEPRKKR 90
                 AEP  + 
Sbjct: 74 ------AAEPYPEA 81


>gi|16797934|gb|AAL29219.1| NADH dehydrogenase subunit 6 [Arenaria interpres]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1  MTYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFVY 69


>gi|154818661|gb|ABS87827.1| NADH dehydrogenase subunit 6 [Felis silvestris bieti]
 gi|155624380|gb|ABU24497.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 85  SNKA-VLAMFITGVLAELLTAC 105


>gi|21672445|ref|NP_660512.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
 gi|25008867|sp|Q8K9X9|NUOJ_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
          Full=NADH dehydrogenase I subunit J; AltName:
          Full=NDH-1 subunit J
 gi|21623058|gb|AAM67723.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
          Length = 163

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 61/92 (66%), Gaps = 1/92 (1%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          FY  S +A+IS+ LV+  +N +YS+  LI + ++ +G+F + GA F   + +V+Y GA+I
Sbjct: 5  FYACSLIAVISTLLVIIQKNAVYSLLYLIISLLSISGIFFIFGAFFAGALEVVIYAGAII 64

Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
          V F+F+IMML++  +  + ++K+     F+IG
Sbjct: 65 VLFVFVIMMLNLG-KKNDLQEKKYLNPIFWIG 95


>gi|154818657|gb|ABS87824.1| NADH dehydrogenase subunit 6 [Felis silvestris bieti]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 23  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 82

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 83  SNKA-VLAMFITGVLAELLTAC 103


>gi|84626825|gb|ABC59816.1| NADH dehydrogenase subunit 6 [Psittacus erithacus]
          Length = 171

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII-M 75
          +++ LV +  +P Y V  L+   V   G  + LG  FV+++  +VY+G ++V F++ + +
Sbjct: 14 LAALLVASNPSPHYGVVGLVLGSVAGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYCVSL 73

Query: 76 MLDIDIEVAEPRKKRGF 92
            D   +V E  +  G+
Sbjct: 74 AADPFPQVWEGWRVVGY 90


>gi|219524187|ref|YP_002456332.1| NADH dehydrogenase subunit 6 [Sacalia quadriocellata]
 gi|117649858|gb|ABK53946.1| NADH dehydrogenase subunit 6 [Sacalia quadriocellata]
          Length = 175

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  F++++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFISLVLFLIYLGGM 63

Query: 67 IVFF 70
          +V F
Sbjct: 64 LVIF 67


>gi|156142548|gb|ABU52039.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|11643413|gb|AAG39567.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 28/162 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ +  L  D    E 
Sbjct: 24  SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV-SLAAD-PYPEA 81

Query: 87  RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135
               G +G  F +G++   ++V A    VF        ++  G  V N+G          
Sbjct: 82  WGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVLVDGGTVNNVGVSFIRLDFGG 131

Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             VLY+  A    I G+ LLL++     ++L   R + R  I
Sbjct: 132 VAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169


>gi|156142546|gb|ABU52038.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142588|gb|ABU52059.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142590|gb|ABU52060.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 7  VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66

Query: 76 MLDIDIEVAEPRKK 89
          +       AEP  +
Sbjct: 67 L------AAEPYPE 74


>gi|11643461|gb|AAG39591.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643463|gb|AAG39592.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643465|gb|AAG39593.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643467|gb|AAG39594.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643469|gb|AAG39595.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643471|gb|AAG39596.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643475|gb|AAG39598.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643477|gb|AAG39599.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643479|gb|AAG39600.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643481|gb|AAG39601.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643483|gb|AAG39602.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643485|gb|AAG39603.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643487|gb|AAG39604.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643489|gb|AAG39605.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643491|gb|AAG39606.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643493|gb|AAG39607.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643495|gb|AAG39608.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643497|gb|AAG39609.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643499|gb|AAG39610.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643501|gb|AAG39611.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643503|gb|AAG39612.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643505|gb|AAG39613.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643507|gb|AAG39614.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643509|gb|AAG39615.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643511|gb|AAG39616.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643513|gb|AAG39617.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643515|gb|AAG39618.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643517|gb|AAG39619.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643519|gb|AAG39620.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643521|gb|AAG39621.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643523|gb|AAG39622.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643525|gb|AAG39623.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643527|gb|AAG39624.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643529|gb|AAG39625.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643531|gb|AAG39626.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643533|gb|AAG39627.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
          Length = 172

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 28/162 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ +  L  D    E 
Sbjct: 24  SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV-SLAAD-PYPEA 81

Query: 87  RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135
               G +G  F +G++   ++V A    VF        ++  G  V N+G          
Sbjct: 82  WGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVLVDGGTVNNVGVSFVRLDFGG 131

Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             VLY+  A    I G+ LLL++     ++L   R + R  I
Sbjct: 132 VAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169


>gi|16797944|gb|AAL29224.1| NADH dehydrogenase subunit 6 [Tringa nebularia]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1  MTYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFVY 69


>gi|254382673|ref|ZP_04998031.1| integral membrane efflux protein [Streptomyces sp. Mg1]
 gi|194341576|gb|EDX22542.1| integral membrane efflux protein [Streptomyces sp. Mg1]
          Length = 1042

 Score = 36.2 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRN---PIYSVFSLIFAFVNAAGLFLLLGAEF--VAMITL 59
           SLF  +F+ +AI+   LV T R+   P+  + S+ FA   A GL ++ G      AMI +
Sbjct: 853 SLFLAMFAAIAIVFMLLVATFRSLVQPLILLVSIPFAATGALGLLIVTGTPMGVPAMIGM 912

Query: 60  VVYVGAVIVFFLFIIMMLD 78
           ++ +G V+   + +I +++
Sbjct: 913 LMLIGIVVTNAIVLIDLVN 931


>gi|37596529|gb|AAQ95025.1| NADH dehydrogenase subunit 6 [Amandava formosa]
          Length = 159

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 16/134 (11%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13  VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV- 71

Query: 76  MLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------RLVFK 127
            L  D    E     G +G  F +G++    ++  S F V   +G +        RL F 
Sbjct: 72  SLAAD-PYPESWADWGVVGYGFGMGLVVMVGLIVGSVFGVLVEDGTVDGGGLLSIRLDFS 130

Query: 128 GNNVENIGKVLYTQ 141
           G        VLY+Q
Sbjct: 131 GV------AVLYSQ 138


>gi|325126731|ref|YP_004285878.1| NADH dehydrogenase subunit 6 [Sturnus tristis]
 gi|324022947|gb|ADY15514.1| NADH dehydrogenase subunit 6 [Sturnus tristis]
          Length = 172

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          I+    V +  +P Y V  L+ A V   G  + LG  FV ++ ++VY+G ++V F++
Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVGLVLVMVYLGGMLVVFVY 69


>gi|84488662|ref|YP_448801.1| NADH dehydrogenase subunit 6 [Testudo graeca]
 gi|67005605|gb|AAY62405.1| NADH dehydrogenase subunit 6 [Testudo graeca]
          Length = 174

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y VFSL+       G+ + +G  FV+++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLVLFLIYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKKR 90
          +V F +   +       AEP    
Sbjct: 64 MVIFAYSCAL------AAEPYPGS 81


>gi|161561807|ref|YP_001586121.1| NADH dehydrogenase subunit 6 [Phoenicopterus ruber roseus]
 gi|143024707|gb|ABO93082.1| NADH dehydrogenase subunit 6 [Phoenicopterus ruber roseus]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|66276085|ref|YP_238228.1| NADH dehydrogenase subunit 6 [Gavia stellata]
 gi|34223664|gb|AAQ63019.1| NADH dehydrogenase subunit 6 [Gavia stellata]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            + F  L S   I+    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1   MTYFVLLLSVCFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYL 60

Query: 64  GAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           G ++V F++ + +  D   E     +  G+ G+ F  +L A ++V
Sbjct: 61  GGMLVVFVYSVSLAADPFPEAWGDWRVMGY-GAGFALVLTAGVVV 104


>gi|240266656|ref|YP_002971033.1| NADH dehydrogenase subunit 6 [Cygnus atratus]
 gi|209887461|gb|ACI95078.1| NADH dehydrogenase subunit 6 [Cygnus atratus]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + +       AEP
Sbjct: 24 SPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77


>gi|302201507|gb|ADL09071.1| NADH dehydrogenase subunit 6 [Geopelia striata]
          Length = 173

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 24 SPYYGVVGLVVASVTGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|313662241|gb|ADR72186.1| NADH dehydrogenase subunit 6 [Polytomella sp. SAG 63-9]
          Length = 116

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 36 IFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
          I  ++N      LLG EF+A+I  +VYVGA+ V FLF++M++ + 
Sbjct: 4  ILLYINVQLFLTLLGFEFMALIYALVYVGALAVLFLFVVMLIRVQ 48


>gi|11643473|gb|AAG39597.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
          Length = 172

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 28/162 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ +  L  D    E 
Sbjct: 24  SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV-SLAAD-PYPEA 81

Query: 87  RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135
               G +G  F +G++   ++V A    VF        ++  G  V N+G          
Sbjct: 82  WGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVMVDGGTVNNVGVSFVRLDFGG 131

Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             VLY+  A    I G+ LLL++     ++L   R + R  I
Sbjct: 132 VAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169


>gi|9230600|gb|AAF85926.1|AF171659_2 NADH dehydrogenase subunit 6 [Carduelis hornemanni]
          Length = 172

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          + S  V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 14 LGSLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|25057779|ref|NP_740008.1| NADH dehydrogenase subunit 6 [Indostomus paradoxus]
 gi|25005983|dbj|BAC23604.1| NADH dehydrogenase subunit 6 [Indostomus paradoxus]
          Length = 170

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 12/158 (7%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P Y  F L+ A     G+ +  GA F+A+I  +VY+G ++V F +   +     
Sbjct: 19  VASNPSPYYGAFGLVVAGGMGCGILVSHGAAFLALILFLVYLGGMLVVFAYAAAL----- 73

Query: 82  EVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAE---GELSRLVFKGNNVENIGK 136
             AEP  +    G  + ++G+    L + AS F+   +E   GE    +  G ++  +  
Sbjct: 74  -AAEPYPEGLLSGEVAIYVGVYVLVLFLGASMFLGNWSESEAGEFEGFLVWGGDMSGVSA 132

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           V    +A  L +  ++LL+++   + ++  H R   R 
Sbjct: 133 VYAEGWAI-LMLGAWVLLMTLFVVLEVIRGHARGALRA 169


>gi|195934722|ref|YP_002120657.1| NADH dehydrogenase subunit 6 [Meles meles]
 gi|155368609|emb|CAM98622.1| NADH dehydrogenase subunit 6 [Meles meles]
          Length = 177

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY   +LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLALIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
             K    LG+F +G+L+  L+ C                + KG++VE
Sbjct: 85  SNKA--VLGAFVVGLLSELLMAC---------------YILKGDDVE 114


>gi|16797925|gb|AAL29215.1| NADH dehydrogenase subunit 6 [Calidris tenuirostris]
          Length = 173

 Score = 35.8 bits (81), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1   MTYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60

Query: 64  GAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVCASNFMVFSAE 118
           G ++V F++ + +  D   E     +  G+  SF +    G++   L+ C    +V    
Sbjct: 61  GGMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFILVLIAGVIVGGLVECWKVGVVTVDS 120

Query: 119 GE--LSRLVFKG 128
           G   L RL F G
Sbjct: 121 GGMFLVRLDFSG 132


>gi|156142542|gb|ABU52036.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 155

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + +       AEP
Sbjct: 7   SPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVSL------AAEP 60

Query: 87  RKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------RLVFKG 128
             +     G +G  F +G++ A  +V +       +EG ++       RL F G
Sbjct: 61  YPEAWGNFGVVGYGFGMGLVVAVGLVMSGTTGALVSEGTVNSGGLLSVRLDFSG 114


>gi|20340062|gb|AAM19666.1| NADH dehydrogenase subunit 6 [Calidris acuminata]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1  MTYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFVY 69


>gi|325126661|ref|YP_004285813.1| NADH dehydrogenase subunit 6 [Leptotila verreauxi]
 gi|304365585|gb|ADM26389.1| NADH dehydrogenase subunit 6 [Leptotila verreauxi]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 24 SPYYGVVGLVVASVTGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|1171829|sp|P43189|NU6M_AETCR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394654|emb|CAA52133.1| NADH dehydrogenase subunit 6 [Aethia cristatella]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++ S  V +  +P Y V  L+ A +   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGSLAVASNPSPYYGVVGLVLASIAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|219524162|ref|YP_002456309.1| NADH dehydrogenase subunit 6 [Accipiter gentilis]
 gi|218783311|dbj|BAH03680.1| NADH dehydrogenase subunit 6 [Accipiter gentilis]
          Length = 172

 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          M
Sbjct: 73 M 73


>gi|83309070|ref|YP_423948.1| NADH dehydrogenase subunit 6 [Cathartes aura]
 gi|38373484|gb|AAR19060.1| NADH dehydrogenase subunit 6 [Cathartes aura]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 75 MMLDIDIEVAEPRKKRGF 92
          +  D   E    R+  G+
Sbjct: 73 LAADPFPEAWGDRRVVGY 90


>gi|66276071|ref|YP_238215.1| NADH dehydrogenase subunit 6 [Larus dominicanus]
 gi|34223678|gb|AAQ63032.1| NADH dehydrogenase subunit 6 [Larus dominicanus]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|16797921|gb|AAL29213.1| NADH dehydrogenase subunit 6 [Xenus cinereus]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|19481588|gb|AAL88866.1|AF407133_1 NADH dehydrogenase subunit 6 [Molothrus bonariensis]
          Length = 159

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       A+P  +
Sbjct: 73 L------AADPYPE 80


>gi|295065526|ref|YP_003587304.1| NADH dehydrogenase subunit 6 [Otis tarda]
 gi|223951409|gb|ACN29662.1| ND6 [Otis tarda]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+   V   G  L LGA FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLLSLGASFVSLVLFMVYLGGMLVVFVY 69


>gi|1171850|sp|P43206|NU6M_SYNWU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394688|emb|CAA52124.1| NADH dehydrogenase subunit 6 [Synthliboramphus wumizusume]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
           ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13  VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +  D   E     +  G+ G  FI +LAA  +V
Sbjct: 73  LAADPFPEAWGDWRVVGY-GVSFIVVLAAGAVV 104


>gi|291612287|ref|YP_003540720.1| NADH dehydrogenase subunit 6 [Columba livia]
 gi|290775870|gb|ADD62365.1| NADH dehydrogenase subunit 6 [Columba livia]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          +FF  FSF  ++    + +  +P Y V  L+ A V   G  L LG  F++++  +VY+G 
Sbjct: 5  VFFLGFSF--VLGGLGMASNPSPYYGVVGLVVASVTGCGWLLSLGVSFMSLVLFMVYLGG 62

Query: 66 VIVFFLF 72
          ++V F++
Sbjct: 63 MLVVFVY 69


>gi|155624619|gb|ABU24676.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624691|gb|ABU24730.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 85  SNKA-VLTMFITGVLAELLTAC 105


>gi|21449944|ref|NP_659361.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|21425436|emb|CAD21743.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|150372681|dbj|BAF66143.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|290544739|gb|ADD37191.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
          Length = 175

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSRLVFKGNNV-----ENIG 135
             K    LG+F +G+L+  L+VC         +VF   G    +V+   +      E +G
Sbjct: 85  SNKAV--LGAFIVGLLSELLLVCYILKDDEADVVFGFNGMGDWVVYDTGDSGFFSEEAMG 142

Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              LY+   + + ++G+ LL   +G +V+M   R +
Sbjct: 143 IAALYSYGTWLVVVTGWSLL---VGVLVIMEITRGN 175


>gi|325126787|ref|YP_004285930.1| NADH dehydrogenase subunit 6 [Bucorvus leadbeateri]
 gi|304365515|gb|ADM26324.1| NADH dehydrogenase subunit 6 [Bucorvus leadbeateri]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  F+A++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFIALVLFMVYLGGMLVVFVY 69


>gi|258649489|ref|YP_003204772.1| NADH dehydrogenase subunit 6 [Hemiphaga novaeseelandiae]
 gi|201066603|gb|ACH92649.1| NADH dehydrogenase subunit 6 [Hemiphaga novaeseelandiae]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A +   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 24 SPYYGVVGLVVASITGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|121534368|ref|ZP_01666192.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Thermosinus
           carboxydivorans Nor1]
 gi|121307138|gb|EAX48056.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Thermosinus
           carboxydivorans Nor1]
          Length = 168

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 6/143 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI-D 80
           VV  RN ++S   L   F+  AGL++LL A+F+A + ++VY GAV V  +  +M+    D
Sbjct: 24  VVFKRNLVHSALLLALTFIGVAGLYVLLQADFLAAVQVLVYNGAVAVIVVIGVMVTQRGD 83

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT 140
           ++ + P    G+  +    +    +I       V +    L+           I ++L  
Sbjct: 84  MKSSNPSNSLGWKAAAVAAVFTGMIIAA-----VAATPWPLAAAPPAAATAPAIAEILLR 138

Query: 141 QYAYPLEISGFILLLSMIGAIVL 163
            +A   E +  +LL++M+GAI+L
Sbjct: 139 DFAVAFETAAVLLLVAMMGAIIL 161


>gi|327555423|gb|AEB01042.1| NADH dehydrogenase subunit 6 [Crocodylus acutus]
 gi|327555437|gb|AEB01055.1| NADH dehydrogenase subunit 6 [Crocodylus intermedius]
          Length = 175

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G ++
Sbjct: 5  FFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64

Query: 68 VFFLFIIMMLD 78
          V F F +   D
Sbjct: 65 VVFAFCVGFTD 75


>gi|326535921|ref|YP_004300366.1| NADH dehydrogenase subunit 6 [Crocodylus moreletii]
 gi|312844614|gb|ADR03180.1| NADH dehydrogenase subunit 6 [Crocodylus moreletii]
          Length = 175

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G ++
Sbjct: 5  FFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64

Query: 68 VFFLFIIMMLD 78
          V F F +   D
Sbjct: 65 VVFAFCVGFTD 75


>gi|322422491|ref|YP_004222069.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|322422492|ref|YP_004222070.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525910|gb|ADW41480.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525911|gb|ADW41481.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525929|gb|ADW41497.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525932|gb|ADW41499.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525935|gb|ADW41501.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525938|gb|ADW41503.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525941|gb|ADW41505.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525958|gb|ADW41516.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525960|gb|ADW41517.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525962|gb|ADW41518.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525964|gb|ADW41519.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525966|gb|ADW41520.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  F+A++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFIALVLFMVYLGGMLVVFVY 69


>gi|224588048|ref|YP_002640576.1| NADH dehydrogenase subunit 6 [Coturnicops exquisitus]
 gi|224471593|dbj|BAH24086.1| NADH dehydrogenase subunit 6 [Coturnicops exquisitus]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V FL+
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGLSFVSLVLFMVYLGGMLVVFLY 69


>gi|148265758|ref|YP_001232464.1| cytochrome c biogenesis protein, transmembrane region [Geobacter
           uraniireducens Rf4]
 gi|146399258|gb|ABQ27891.1| cytochrome c biogenesis protein, transmembrane region [Geobacter
           uraniireducens Rf4]
          Length = 246

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 26/153 (16%)

Query: 33  FSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV--IVFFLFIIMMLDIDIEVAEPR--- 87
           F+ +F  + A+  F+  G    A +T +  VG V  +VF + +  + DI + + E R   
Sbjct: 71  FTFVFVLLGASATFI--GGFLQAHMTALRRVGGVLIVVFGIHVSGIFDIGVLLGEKRLTL 128

Query: 88  --KKRGFLGSFFIGI-LAAELIVC-----ASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
             K  GF GSF +G+  AA    C     AS  MV + E  + R          IG +L 
Sbjct: 129 HRKPAGFFGSFVVGVAFAAGWTPCIGPILASILMVAATESTVYR---------GIGLLL- 178

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
             Y+  L I  F+  L+M   +VL  R ++ I+
Sbjct: 179 -AYSMGLAIPFFLASLAMHQFLVLFTRFKKYIR 210


>gi|37886710|gb|AAR04680.1| NADH dehydrogenase subunit 6 [Coragyps atratus]
          Length = 170

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 75 MMLDIDIEVAEPRKKRGF 92
          +  D   E    R+  G+
Sbjct: 73 LAADPFPEAWGDRRVVGY 90


>gi|257051783|ref|YP_003129616.1| NADH dehydrogenase subunit J [Halorhabdus utahensis DSM 12940]
 gi|256690546|gb|ACV10883.1| NADH dehydrogenase subunit J [Halorhabdus utahensis DSM 12940]
          Length = 90

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 44/75 (58%)

Query: 2  VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
          V++ + F LF+   + +S  VV VR+  ++   L  A ++ A  +++  A FVA + ++V
Sbjct: 3  VLELIAFGLFALTTVGASLGVVLVRDVWHAALMLGIALLSVAVFYVMNQAPFVAAMQVLV 62

Query: 62 YVGAVIVFFLFIIMM 76
          YVG V++   F +M+
Sbjct: 63 YVGGVLILISFAVML 77


>gi|27819327|ref|NP_777301.1| NADH dehydrogenase subunit 6 [Eudyptula minor]
 gi|27764475|gb|AAO23039.1|AF362763_13 NADH dehydrogenase subunit 6 [Eudyptula minor]
          Length = 172

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLASVMGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|326535908|ref|YP_004300354.1| NADH dehydrogenase subunit 6 [Emberiza tristrami]
 gi|325305658|gb|ADZ10822.1| NADH dehydrogenase subunit 6 [Emberiza tristrami]
          Length = 172

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          LF        ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G 
Sbjct: 3  LFVLFLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGG 62

Query: 66 VIVFFLF 72
          ++V F++
Sbjct: 63 MLVVFVY 69


>gi|138892893|ref|YP_001127602.1| NADH dehydrogenase subunit 6 [Ursus thibetanus formosanus]
 gi|195933648|ref|YP_002117941.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus]
 gi|117649944|gb|ABK54011.1| NADH dehydrogenase subunit 6 [Ursus thibetanus formosanus]
 gi|148910928|gb|ABR18510.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus]
 gi|151384883|gb|ABS11106.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus]
 gi|195182356|emb|CAQ68415.1| NADH dehydrogenase subunit 6 [Ursus thibetanus]
          Length = 175

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 29/162 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  +VY+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV-------------- 131
             K    LG+F +G+L+  LI C      +  + +   +VFK N V              
Sbjct: 85  SNKAV--LGAFIVGLLSELLIAC------YVLKDDEVEIVFKFNGVGDWVIYDTGDSGFF 136

Query: 132 --ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             E +G   LY+   + + ++G+ LL   IG +V+M   R +
Sbjct: 137 SEEAMGIAALYSYGTWLVIVTGWSLL---IGVLVIMEVTRGN 175


>gi|327555451|gb|AEB01068.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
 gi|327555465|gb|AEB01081.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
          Length = 175

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G ++
Sbjct: 5  FFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64

Query: 68 VFFLFIIMMLD 78
          V F F +   D
Sbjct: 65 VVFAFCVGFTD 75


>gi|116734736|ref|YP_842372.1| NADH dehydrogenase subunit 6 [Dryocopus pileatus]
 gi|109676628|gb|ABG37719.1| NADH dehydrogenase subunit 6 [Dryocopus pileatus]
          Length = 173

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          I+    V +  +P Y V  L+ A V   G  L +G  FVA++  +VY+G ++V F++
Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSVGVSFVALVLFMVYLGGMLVVFVY 69


>gi|195933661|ref|YP_002117956.1| NADH dehydrogenase subunit 6 [Ursus thibetanus thibetanus]
 gi|146221817|gb|ABQ12046.1| NADH dehydrogenase subunit 6 [Ursus thibetanus thibetanus]
          Length = 175

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  +VY+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133
             K    LG+F +G+L+  LI C      +  + +   +VFK N V +
Sbjct: 85  SNKAV--LGAFIVGLLSELLIAC------YVLKDDEVEIVFKFNGVGD 124


>gi|281424347|ref|ZP_06255260.1| NADH dehydrogenase I, subunit 6 [Prevotella oris F0302]
 gi|281401616|gb|EFB32447.1| NADH dehydrogenase I, subunit 6 [Prevotella oris F0302]
          Length = 173

 Score = 35.4 bits (80), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 25/178 (14%)

Query: 10  LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           +F  +A++   S+ + V  +  + S   L+F     AG++ LL   F+    + VY G +
Sbjct: 6   MFCILAVVILGSAIMCVLTKRIMRSATFLLFVLFGVAGIYFLLDYTFLGAAQISVYAGGI 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSF------------FIGILAAELIVCASNFMV 114
            + ++F        I++   R  +G +  F             +G++   L++  +NF  
Sbjct: 66  TMMYIF-------AIQLVSKRTLQGLVERFKGSRVVNGILLSIVGLVTVGLVLIKNNFYN 118

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            + +   + +  +      +G   Y QY  P E     LL  +IG I  M+  + D K
Sbjct: 119 AAMQATDTEVPMEQIGTALLGSDKY-QYVLPFEFISLFLLACIIGGI--MIARKEDNK 173


>gi|37596555|gb|AAQ95038.1| NADH dehydrogenase subunit 6 [Lonchura griseicapilla]
          Length = 159

 Score = 35.4 bits (80), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVCLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596557|gb|AAQ95039.1| NADH dehydrogenase subunit 6 [Heteromunia pectoralis]
          Length = 159

 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87 RKKR 90
            + 
Sbjct: 78 YPES 81


>gi|325149529|ref|YP_004285982.1| NADH dehydrogenase subunit 6 [Zenaida auriculata]
 gi|304365543|gb|ADM26350.1| NADH dehydrogenase subunit 6 [Zenaida auriculata]
          Length = 172

 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  + LG  FVA++ ++VY+G ++V F++ + +       A+P
Sbjct: 24 SPYYGVVGLVLASVAGCGWLVSLGVSFVALVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87 RKK 89
            +
Sbjct: 78 YPE 80


>gi|1304717|gb|AAA99081.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei]
          Length = 173

 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|1171830|sp|P43190|NU6M_AETPU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394656|emb|CAA52131.1| NADH dehydrogenase subunit 6 [Aethia pusilla]
          Length = 173

 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASKPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|1171847|sp|P43203|NU6M_PTYAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394682|emb|CAA52129.1| NADH dehydrogenase subunit 6 [Ptychoramphus aleuticus]
          Length = 173

 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|1171842|sp|P43199|NU6M_CYCPS RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394672|emb|CAA52130.1| NADH dehydrogenase subunit 6 [Cyclorrhynchus psittacula]
          Length = 173

 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|84488772|ref|YP_448814.1| NADH dehydrogenase subunit 6 [Manouria emys]
 gi|67005631|gb|AAY62429.1| NADH dehydrogenase subunit 6 [Manouria emys]
          Length = 174

 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y V SL+    +  G+ + +G  FV+++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMIGVSCSSSPYYGVLSLVLGAASGCGVLVGMGGSFVSLVLFLIYLGGM 63

Query: 67 IVFFLF 72
          +V F +
Sbjct: 64 LVIFAY 69


>gi|13541941|ref|NP_111629.1| NADH dehydrogenase subunit J [Thermoplasma volcanium GSS1]
 gi|14325372|dbj|BAB60276.1| NADH dehydrogenase I chain G [Thermoplasma volcanium GSS1]
          Length = 82

 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 19 SFLVVTVRNPIYS-VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          S L V  +N  +S ++  +F F+ AA  FL LGA FVA + ++VY+GAV+   +F +M+
Sbjct: 18 SVLSVKEKNITHSAIYLFLFLFILAAE-FLFLGASFVAAVEILVYIGAVVTLIVFTVML 75


>gi|187250403|ref|YP_001874825.1| NADH dehydrogenase subunit 6 [Mecistops cataphractus]
 gi|145315408|gb|ABP62970.1| NADH dehydrogenase subunit 6 [Mecistops cataphractus]
          Length = 175

 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M ++ F+L   M ++S  LV       Y V SL+FA +  +GL +  G  FV ++ L++Y
Sbjct: 1  MGTMLFFLCCLM-MVSVVLVAFGVTIHYGVVSLLFAAMFGSGLLVAGGGSFVPLVVLLIY 59

Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRG 91
          +G ++V F F +   D +  E       +G
Sbjct: 60 LGGMLVVFAFCVGFTDDEYCEFWGAGGSKG 89


>gi|242097249|emb|CAY39926.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
          Length = 153

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  +VY+G ++V F +   M          
Sbjct: 3   SPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWV 62

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F +G+L+  LI C
Sbjct: 63  SNKA-VLGAFIVGLLSELLIAC 83


>gi|89274126|ref|YP_514831.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
 gi|89146661|gb|ABD62293.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
 gi|90576922|gb|ABD95516.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
 gi|90576936|gb|ABD95529.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
 gi|90576950|gb|ABD95542.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
          Length = 172

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|66276029|ref|YP_238280.1| NADH dehydrogenase subunit 6 [Branta canadensis]
 gi|63004247|gb|AAY25515.1| NADH dehydrogenase subunit 6 [Branta canadensis]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  L LG  F+A++  +VY+G ++V F++ + +       AEP
Sbjct: 24 SPYYGVVGLVLASVAGCGWLLGLGVSFLALVLFMVYLGGMLVVFVYSVAL------AAEP 77


>gi|5081455|gb|AAD39390.1|AF123910_1 NADH dehydrogenase subunit 6 [Grus japonensis]
 gi|224504078|gb|ACN53656.1| NADH dehydrogenase subunit 6 [Grus japonensis]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 35/69 (50%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1  MTYFMFFMGMCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYL 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFVY 69


>gi|2789675|gb|AAB96918.1| NADH-ubiquinone oxidoreductase subunit 6 [Geomys personatus]
          Length = 174

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 15 AIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
          A++  FLVV V+ +PIY+   LI +     GL L  G  ++ ++  ++Y+G ++V F
Sbjct: 12 AMVVGFLVVAVKPSPIYAGLGLIISGGAGCGLLLYHGCSYMGLMVYLIYLGGMLVVF 68


>gi|326535963|ref|YP_004300405.1| NADH dehydrogenase subunit 6 [Crocodylus johnsoni]
 gi|312227691|gb|ADQ52682.1| NADH dehydrogenase subunit 6 [Crocodylus johnsoni]
          Length = 175

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+L   + + S  LV +     Y V SL+FA +  +GL  + G  F+ ++ L++Y+G ++
Sbjct: 5  FFLLCCLMMASVVLVASGVAIHYGVVSLLFAAMFGSGLLAMGGGSFMPLVVLLIYLGGLL 64

Query: 68 VFFLFIIMMLD 78
          V F F +   D
Sbjct: 65 VVFAFCVGFTD 75


>gi|134303115|ref|YP_001122872.1| NADH dehydrogenase subunit 6 [Macrochelys temminckii]
 gi|116739705|gb|ABK20577.1| NADH dehydrogenase subunit 6 [Macrochelys temminckii]
          Length = 176

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V SL+    +   + +++G  FV+++  ++Y+G ++V F +   +      VAEP
Sbjct: 24 SPYYGVLSLVLGAASGCAVLVVMGGSFVSLVLFLIYLGGMLVLFAYSAAL------VAEP 77

Query: 87 RK 88
          R 
Sbjct: 78 RP 79


>gi|1171831|sp|P43191|NU6M_AETPY RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394658|emb|CAA52132.1| NADH dehydrogenase subunit 6 [Aethia pygmaea]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|213026362|ref|ZP_03340809.1| hypothetical protein Salmonelentericaenterica_29535 [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 62

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 45 LFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
          +F  LGA F   + ++VY GA++V F+F++MML++
Sbjct: 8  VFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNL 42


>gi|327492833|ref|YP_004347715.1| NADH dehydrogenase subunit 6 [Tylerius spinosissimus]
 gi|327392656|dbj|BAK10079.1| NADH dehydrogenase subunit 6 [Tylerius spinosissimus]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 11/113 (9%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           T   P Y VF+L+   +   G  +L G  F++++ L++Y+G ++V F++    L  D + 
Sbjct: 21  TNPAPFYGVFNLVLVALLCCGAIILHGGTFLSLVLLLIYMGGMLVVFIY-SSALSADKDP 79

Query: 84  AEPRKKR------GFLGSFFIGILAAELIVCASNFMVFSAEGELSR-LVFKGN 129
             P   +      G+  SF +G+L    ++     + +   GEL    VF+G+
Sbjct: 80  EAPTGWQVSLFFFGYF-SFVLGVLGMSTVL--EEEVWWGVSGELDWDTVFRGD 129


>gi|37596457|gb|AAQ94989.1| NADH dehydrogenase subunit 6 [Uraeginthus ianthinogaster]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|73672479|gb|AAZ80420.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672482|gb|AAZ80422.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672485|gb|AAZ80424.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672488|gb|AAZ80426.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672491|gb|AAZ80428.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672494|gb|AAZ80430.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672497|gb|AAZ80432.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672500|gb|AAZ80434.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672503|gb|AAZ80436.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672512|gb|AAZ80442.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672515|gb|AAZ80444.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672518|gb|AAZ80446.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672521|gb|AAZ80448.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672524|gb|AAZ80450.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672527|gb|AAZ80452.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672530|gb|AAZ80454.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319558|gb|ABA02924.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319561|gb|ABA02926.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319564|gb|ABA02928.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319567|gb|ABA02930.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319570|gb|ABA02932.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319573|gb|ABA02934.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319576|gb|ABA02936.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319579|gb|ABA02938.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319582|gb|ABA02940.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319585|gb|ABA02942.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319588|gb|ABA02944.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319591|gb|ABA02946.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319594|gb|ABA02948.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319597|gb|ABA02950.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319600|gb|ABA02952.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319603|gb|ABA02954.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319606|gb|ABA02956.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319609|gb|ABA02958.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319612|gb|ABA02960.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319615|gb|ABA02962.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319618|gb|ABA02964.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319621|gb|ABA02966.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319624|gb|ABA02968.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319627|gb|ABA02970.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319630|gb|ABA02972.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319633|gb|ABA02974.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319636|gb|ABA02976.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319639|gb|ABA02978.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319642|gb|ABA02980.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319645|gb|ABA02982.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319648|gb|ABA02984.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319651|gb|ABA02986.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319654|gb|ABA02988.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319657|gb|ABA02990.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319660|gb|ABA02992.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319663|gb|ABA02994.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
          Length = 168

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++ +  V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 16 VLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 75

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 76 L------AADPYPES 84


>gi|93007406|ref|YP_581747.1| NADH dehydrogenase subunit 6 [Platysternon megacephalum]
 gi|78157480|gb|ABB22855.1| NADH dehydrogenase subunit 6 [Platysternon megacephalum]
          Length = 174

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y V SLI    +  G+ + +G  FV+++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCNPSPYYGVLSLILGAASGCGVLVSVGGSFVSLVLFLIYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRK 88
          +V F +   +      VAEP  
Sbjct: 64 LVIFAYSAAL------VAEPYP 79


>gi|37596445|gb|AAQ94983.1| NADH dehydrogenase subunit 6 [Pytilia hypogrammica]
 gi|37596447|gb|AAQ94984.1| NADH dehydrogenase subunit 6 [Pytilia phoenicoptera]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 24/138 (17%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13  ILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76  MLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------R 123
           +       A+P  +     G +G  F +G++    +  A  F V +  G +        R
Sbjct: 73  L------AADPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLTDGGTVDSGGLLSVR 126

Query: 124 LVFKGNNVENIGKVLYTQ 141
           L F G        VLY+Q
Sbjct: 127 LDFGGA------AVLYSQ 138


>gi|37596449|gb|AAQ94985.1| NADH dehydrogenase subunit 6 [Pytilia lineata]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 24/138 (17%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13  ILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76  MLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------R 123
           +       A+P  +     G +G  F +G++    +  A  F V +  G +        R
Sbjct: 73  L------AADPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLTDGGTVDSGGLLSVR 126

Query: 124 LVFKGNNVENIGKVLYTQ 141
           L F G        VLY+Q
Sbjct: 127 LDFGGA------AVLYSQ 138


>gi|82395883|gb|ABB72511.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
 gi|327555493|gb|AEB01107.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
          Length = 175

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G ++
Sbjct: 5  FFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64

Query: 68 VFFLFIIMMLD 78
          V F F +   D
Sbjct: 65 VVFAFCVGFTD 75


>gi|1304714|gb|AAA99079.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei]
 gi|1304722|gb|AAA99084.1| NADH dehydrogenase subunit 6 [Grus antigone antigone]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|73672089|gb|AAZ80412.1| NADH dehydrogenase subunit 6 [Sitta pusilla]
          Length = 172

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++ +  V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|5081447|gb|AAD39386.1|AF123906_1 NADH dehydrogenase subunit 6 [Grus grus]
 gi|5081449|gb|AAD39387.1|AF123907_1 NADH dehydrogenase subunit 6 [Grus monacha]
 gi|224504106|gb|ACN53682.1| NADH dehydrogenase subunit 6 [Grus grus]
 gi|224504120|gb|ACN53695.1| NADH dehydrogenase subunit 6 [Grus monacha]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|1304709|gb|AAA99076.1| NADH dehydrogenase subunit 6 [Grus antigone gillae]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|73672056|gb|AAZ80390.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672059|gb|AAZ80392.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672062|gb|AAZ80394.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672065|gb|AAZ80396.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672068|gb|AAZ80398.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672071|gb|AAZ80400.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672074|gb|AAZ80402.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672077|gb|AAZ80404.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672080|gb|AAZ80406.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672083|gb|AAZ80408.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672086|gb|AAZ80410.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319665|gb|ABA02995.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319669|gb|ABA02998.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319672|gb|ABA03000.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319675|gb|ABA03002.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319678|gb|ABA03004.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319681|gb|ABA03006.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319684|gb|ABA03008.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319687|gb|ABA03010.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319690|gb|ABA03012.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319693|gb|ABA03014.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319696|gb|ABA03016.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319698|gb|ABA03017.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
          Length = 172

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++ +  V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|73672506|gb|AAZ80438.1| NADH dehydrogenase subunit 6 [Sitta pusilla]
 gi|73672509|gb|AAZ80440.1| NADH dehydrogenase subunit 6 [Sitta pusilla]
          Length = 168

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++ +  V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 16 VLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 75

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 76 L------AADPYPES 84


>gi|16082007|ref|NP_394424.1| NADH dehydrogenase subunit J [Thermoplasma acidophilum DSM 1728]
 gi|10640279|emb|CAC12093.1| NADH dehydrogenase, chain J related protein [Thermoplasma
          acidophilum]
          Length = 82

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 10 LFSFMAI-ISSFLVVTVR--NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          +FS +AI + +F V++VR  N  +SV  L    +  A  FL +GA F+A + ++VY+GAV
Sbjct: 6  IFSLIAIFLIAFSVMSVREKNLTHSVIYLFLFLIILASEFLFIGASFIAAVEVLVYIGAV 65

Query: 67 IVFFLFIIMM 76
          +    F +M+
Sbjct: 66 VTILAFTVML 75


>gi|157488889|gb|ABV57848.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|5081433|gb|AAD39379.1|AF123899_1 NADH dehydrogenase subunit 6 [Grus carunculatus]
 gi|224504022|gb|ACN53604.1| NADH dehydrogenase subunit 6 [Grus carunculatus]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 35/69 (50%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1  MTYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYL 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFVY 69


>gi|327555479|gb|AEB01094.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
          Length = 175

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G ++
Sbjct: 5  FFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64

Query: 68 VFFLFIIMMLD 78
          V F F +   D
Sbjct: 65 VVFAFCVGFTD 75


>gi|304322921|ref|YP_003856759.1| NADH dehydrogenase subunit 6 [Sturnus sericeus]
 gi|302377864|gb|ADL32016.1| NADH dehydrogenase subunit 6 [Sturnus sericeus]
          Length = 172

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          V +  +P Y V  L+ A V   G  + LG  FV ++ ++VY+G ++V F++
Sbjct: 19 VASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVGLVLVMVYLGGMLVVFVY 69


>gi|218157314|ref|YP_002364467.1| NADH dehydrogenase subunit 6 [Geococcyx californianus]
 gi|166093109|gb|ABY82541.1| NADH dehydrogenase subunit 6 [Geococcyx californianus]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEP 86
          +       AEP
Sbjct: 73 L------AAEP 77


>gi|257077084|ref|ZP_05571445.1| hypothetical protein Faci_08471 [Ferroplasma acidarmanus fer1]
          Length = 83

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 46/74 (62%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          + ++ F++ + +A+I +   ++ +N I+S   L+   +  + +F+ LG  FV  I L+VY
Sbjct: 2  IDTIIFFILAAIAVIMALSAISTKNLIHSSIFLLILLLMFSIIFIFLGLSFVGSIELLVY 61

Query: 63 VGAVIVFFLFIIMM 76
           GAV++  +F++M+
Sbjct: 62 AGAVVMLIVFVLML 75


>gi|1304732|gb|AAA99090.1| NADH dehydrogenase subunit 6 [Grus rubicunda]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|90576908|gb|ABD95503.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
          Length = 172

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|1304712|gb|AAA99078.1| NADH dehydrogenase subunit 6 [Grus antigone gillae]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|5081435|gb|AAD39380.1|AF123900_1 NADH dehydrogenase subunit 6 [Grus leucogeranus]
 gi|224504064|gb|ACN53643.1| NADH dehydrogenase subunit 6 [Grus leucogeranus]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+
Sbjct: 1  MTYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYL 60

Query: 64 GAVIVFFLF-IIMMLDIDIEVAEPRKKRGF 92
          G ++V F++ + +  D   E    R   G+
Sbjct: 61 GGMLVVFVYSVSLAADPYPEAWGDRPVVGY 90


>gi|1171851|sp|P43207|NU6M_URIAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|262835|gb|AAB24770.1| NADH dehydrogenase subunit 6 [Uria aalge]
 gi|394690|emb|CAA52118.1| NADH dehydrogenase subunit 6 [Uria aalge]
 gi|21104310|emb|CAC80353.1| NADH dehydrogenase subunit 6 [Uria aalge]
          Length = 172

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69


>gi|238908466|ref|YP_002929450.1| NADH dehydrogenase subunit 6 [Platalea leucorodia]
 gi|238626030|gb|ACR48312.1| NADH dehydrogenase subunit 6 [Platalea leucorodia]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVA 72

Query: 75 MMLDIDIEVAEPRKKRGFLGSF 96
          +  D+  E     +  G+   F
Sbjct: 73 LAADLFPETWGDWRVMGYGAGF 94


>gi|37596515|gb|AAQ95018.1| NADH dehydrogenase subunit 6 [Cryptospiza shelleyi]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596469|gb|AAQ94995.1| NADH dehydrogenase subunit 6 [Estrilda erythronotos]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|5081451|gb|AAD39388.1|AF123908_1 NADH dehydrogenase subunit 6 [Grus americana]
 gi|224504092|gb|ACN53669.1| NADH dehydrogenase subunit 6 [Grus americana]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|313768472|ref|YP_004062151.1| NADH dehydrogenase subunit 6 [Cuora amboinensis]
 gi|225194544|gb|ACN81799.1| NADH dehydrogenase subunit 6 [Cuora amboinensis]
          Length = 174

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 30/46 (65%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G ++V F +
Sbjct: 24 SPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGMLVIFAY 69


>gi|37596439|gb|AAQ94980.1| NADH dehydrogenase subunit 6 [Pytilia melba percivali]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596501|gb|AAQ95011.1| NADH dehydrogenase subunit 6 [Spermophaga haematina haematina]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|730211|sp|P41322|NU6M_LARCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394678|emb|CAA52137.1| NADH dehydrogenase subunit 6 [Larus canus]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|302201575|gb|ADL09134.1| NADH dehydrogenase subunit 6 [Aceros corrugatus]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 7  FFYLFSFMA-IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          +F LF  +A ++    V +  +P Y V  L+   V   G  L LG  F+A++  +VY+G 
Sbjct: 3  YFVLFFGLAFVLGGLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGVSFIALVLFMVYLGG 62

Query: 66 VIVFFLF 72
          ++V F++
Sbjct: 63 MLVVFVY 69


>gi|54112097|ref|YP_122154.1| NADH dehydrogenase subunit 6 [Zaglossus bruijni]
 gi|54019669|emb|CAG26340.1| NADH dehydrogenase subunit 6 [Zaglossus bruijni]
          Length = 166

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F YL S + ++S     +  +PIY   SL+ +     G+ + LG  F+ +I  +VY+G +
Sbjct: 4  FIYLLSIVLVLSFMAFASKPSPIYGGLSLVLSGGVGCGIIVSLGGSFLGLIVFLVYLGGM 63

Query: 67 IVFF 70
          +V F
Sbjct: 64 LVVF 67


>gi|5835735|ref|NP_008548.1|ND6_15050 NADH dehydrogenase subunit 6 [Corvus frugilegus]
 gi|4454087|emb|CAA77207.1| NADH dehydrogenase subunit 6 [Corvus frugilegus]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A +   G  L +G  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVASIAGCGWLLSMGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|5081453|gb|AAD39389.1|AF123909_1 NADH dehydrogenase subunit 6 [Grus nigricollis]
 gi|224504134|gb|ACN53708.1| NADH dehydrogenase subunit 6 [Grus nigricollis]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|322422520|ref|YP_004222096.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|322422521|ref|YP_004222097.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525925|gb|ADW41494.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525926|gb|ADW41495.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525944|gb|ADW41507.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525947|gb|ADW41509.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525950|gb|ADW41511.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525953|gb|ADW41513.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525956|gb|ADW41515.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525968|gb|ADW41521.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525970|gb|ADW41522.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525972|gb|ADW41523.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525974|gb|ADW41524.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525976|gb|ADW41525.1| NADH dehydrogenase subunit 6 [Penelopides panini]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 6  LFFYLFSFMA-IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          ++F LF  +A ++    V +  +P Y V  L+ A V   G  L LG  F+A+   +VY+G
Sbjct: 2  IYFVLFLGLAFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFIALALFMVYLG 61

Query: 65 AVIVFFLF 72
           ++V F++
Sbjct: 62 GMLVVFVY 69


>gi|37596455|gb|AAQ94988.1| NADH dehydrogenase subunit 6 [Euschistospiza dybowskii]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|299140921|ref|ZP_07034059.1| NADH dehydrogenase I, subunit 6 [Prevotella oris C735]
 gi|298577887|gb|EFI49755.1| NADH dehydrogenase I, subunit 6 [Prevotella oris C735]
          Length = 168

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 25/178 (14%)

Query: 10  LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           +F  +A++   S+ + V  +  + S   L+F     AG++ LL   F+    + VY G +
Sbjct: 1   MFCILAVVILGSAIMCVLTKRIMRSATFLLFVLFGVAGIYFLLDYTFLGAAQISVYAGGI 60

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSF------------FIGILAAELIVCASNFMV 114
            + ++F        I++   R  +G +  F             +G++   L++  +NF  
Sbjct: 61  TMMYIF-------AIQLVSKRTLQGLVERFKVSRVVNGILLSTVGLVTVGLVLIKNNFYN 113

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            + +   + +  +      +G   Y QY  P E     LL  +IG I  M+  + D K
Sbjct: 114 AAMQATDTEVPMEQIGTALLGSDKY-QYVLPFEFISLFLLACIIGGI--MIARKEDNK 168


>gi|37596451|gb|AAQ94986.1| NADH dehydrogenase subunit 6 [Pytilia afra]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 24/138 (17%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13  ILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76  MLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------R 123
           +       A+P  +     G +G  F +G++    +  A  F V +  G +        R
Sbjct: 73  L------AADPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLADGGTVDSGGLLSVR 126

Query: 124 LVFKGNNVENIGKVLYTQ 141
           L F G        VLY+Q
Sbjct: 127 LDFGGA------AVLYSQ 138


>gi|16797942|gb|AAL29223.1| NADH dehydrogenase subunit 6 [Numenius phaeopus]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69


>gi|301058805|ref|ZP_07199791.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [delta
          proteobacterium NaphS2]
 gi|300447090|gb|EFK10869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [delta
          proteobacterium NaphS2]
          Length = 169

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
          + + V  ++ + ++  LI   +  AG++LLL A F+A + +++YVG V V   F IM+  
Sbjct: 20 AVMAVMSKSLVRALVGLIAVMIALAGMYLLLAAPFIAFMQILIYVGGVSVLIFFAIMLSK 79

Query: 79 IDIEVAE 85
             E  E
Sbjct: 80 ASAEGDE 86


>gi|37596471|gb|AAQ94996.1| NADH dehydrogenase subunit 6 [Estrilda quartinia kilimensis]
 gi|37596473|gb|AAQ94997.1| NADH dehydrogenase subunit 6 [Estrilda melanotis]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596545|gb|AAQ95033.1| NADH dehydrogenase subunit 6 [Emblema pictum]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|5081429|gb|AAD39377.1|AF123897_1 NADH dehydrogenase subunit 6 [Grus virgo]
 gi|224504050|gb|ACN53630.1| NADH dehydrogenase subunit 6 [Grus virgo]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|11643403|gb|AAG39562.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24  SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87  -RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135
             +  G  G    G     +IV  +        G    LV  G  V N+G          
Sbjct: 78  YPEAWGDWGVVEYGFGMGMVIVVGA-----VVSGVFEVLV-DGGTVNNVGVSFIRLDFGG 131

Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             VLY+  A    I G+ LLL++     ++L   R + R  I
Sbjct: 132 AAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169


>gi|21104306|emb|CAC80350.1| NADH dehydrogenase subunit 6 [Pinguinus impennis]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|19481552|gb|AAL88848.1|AF407115_1 NADH dehydrogenase subunit 6 [Lagonosticta sanguinodorsalis]
 gi|37596425|gb|AAQ94973.1| NADH dehydrogenase subunit 6 [Lagonosticta rhodopareia jamesoni]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596551|gb|AAQ95036.1| NADH dehydrogenase subunit 6 [Lonchura fringilloides]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|37596443|gb|AAQ94982.1| NADH dehydrogenase subunit 6 [Pytilia melba citerior]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|1304730|gb|AAA99089.1| NADH dehydrogenase subunit 6 [Grus rubicunda]
 gi|224504162|gb|ACN53734.1| NADH dehydrogenase subunit 6 [Grus rubicunda]
          Length = 173

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|37596541|gb|AAQ95031.1| NADH dehydrogenase subunit 6 [Poephila cincta]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|19481564|gb|AAL88854.1|AF407121_1 NADH dehydrogenase subunit 6 [Bubalornis albirostris]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       A+P  +
Sbjct: 73 L------AADPYPE 80


>gi|19481574|gb|AAL88859.1|AF407126_1 NADH dehydrogenase subunit 6 [Motacilla alba]
          Length = 159

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|256427272|ref|YP_003127037.1| Nad6p [Brettanomyces custersianus]
 gi|255761583|gb|ACU32820.1| Nad6p [Brettanomyces custersianus]
          Length = 168

 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 19/130 (14%)

Query: 50  GAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++  A++  ++YVGAV++ F+FI+ +L+         KK  +   +   +L   ++   
Sbjct: 45  SSQLFAILYTLIYVGAVVILFVFILSVLN---------KKEEYEYQYSSLLLILIILFLD 95

Query: 110 SNFMVFSAEGELSRL-VFKGNNVENI---------GKVLYTQYAYPLEISGFILLLSMIG 159
                 S +  L+ + +F   N+ NI         G +L+T+Y++ L I    LLLS+IG
Sbjct: 96  DLDYNDSGDYNLNNVNIFDNFNLLNITNNSDLATIGNLLFTEYSFLLVIIAVTLLLSIIG 155

Query: 160 AIVLMLRHRR 169
            IV++ R++ 
Sbjct: 156 IIVIVKRNKS 165


>gi|37596531|gb|AAQ95026.1| NADH dehydrogenase subunit 6 [Erythrura trichroa]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596503|gb|AAQ95012.1| NADH dehydrogenase subunit 6 [Pyrenestes ostrinus]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596535|gb|AAQ95028.1| NADH dehydrogenase subunit 6 [Neochmia ruficauda]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|322422702|ref|YP_004222414.1| NADH dehydrogenase subunit 6 [Mauremys megalocephala]
 gi|296040860|gb|ADG85403.1| NADH dehydrogenase subunit 6 [Mauremys megalocephala]
          Length = 174

 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF F  +     V    +P Y V SLIF  +   G+ + +G  FV+++  ++Y+G +
Sbjct: 4  FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALFGCGVLVGMGGSFVSLVLFLIYLGGM 63

Query: 67 IVFF 70
          +V F
Sbjct: 64 LVIF 67


>gi|299889170|dbj|BAJ10291.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889171|dbj|BAJ10292.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889174|dbj|BAJ10294.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889175|dbj|BAJ10295.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889178|dbj|BAJ10297.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889179|dbj|BAJ10298.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889182|dbj|BAJ10300.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889183|dbj|BAJ10301.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
          Length = 175

 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|37596537|gb|AAQ95029.1| NADH dehydrogenase subunit 6 [Neochmia phaeton phaeton]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|1304706|gb|AAA99074.1| NADH dehydrogenase subunit 6 [Grus antigone gillae]
 gi|1304720|gb|AAA99083.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei]
 gi|1304725|gb|AAA99086.1| NADH dehydrogenase subunit 6 [Grus antigone antigone]
 gi|1304728|gb|AAA99088.1| NADH dehydrogenase subunit 6 [Grus antigone antigone]
 gi|224504176|gb|ACN53747.1| NADH dehydrogenase subunit 6 [Grus antigone]
          Length = 173

 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|190349481|ref|YP_001974552.1| NADH dehydrogenase subunit 6 [Platalea minor]
 gi|134268955|gb|ABO68978.1| NADH dehydrogenase subunit 6 [Platalea minor]
 gi|283131464|dbj|BAI63462.1| NADH dehydrogenase subunit 6 [Platalea minor]
 gi|283131465|dbj|BAI63463.1| NADH dehydrogenase subunit 6 [Platalea minor]
 gi|283131468|dbj|BAI63465.1| NADH dehydrogenase subunit 6 [Platalea minor]
 gi|283131469|dbj|BAI63466.1| NADH dehydrogenase subunit 6 [Platalea minor]
          Length = 173

 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVA 72

Query: 75 MMLDIDIEVAEPRKKRGFLGSF 96
          +  D+  E     +  G+   F
Sbjct: 73 LAADLFPEAWGDWRVMGYGAGF 94


>gi|37596433|gb|AAQ94977.1| NADH dehydrogenase subunit 6 [Lagonosticta rufopicta]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|159524383|ref|YP_001542766.1| NADH dehydrogenase subunit 6 [Helarctos malayanus]
 gi|121592342|gb|ABM63276.1| NADH dehydrogenase subunit 6 [Helarctos malayanus]
 gi|195182447|emb|CAQ68493.1| NADH dehydrogenase subunit 6 [Helarctos malayanus]
          Length = 175

 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 27/161 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIISGGAGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV--------------- 131
             K   LG+F +G+L+  LI C      +  + +   +VFK N V               
Sbjct: 85  SNKA-VLGAFIVGLLSELLIAC------YVLKDDEVEVVFKFNGVGDWVIYDTGDSGFFS 137

Query: 132 -ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            E +G   LY+   + + ++G+ LL   IG +V+M   R +
Sbjct: 138 EEAMGIAALYSYGTWLVIVTGWSLL---IGVLVIMEVTRGN 175


>gi|37596523|gb|AAQ95022.1| NADH dehydrogenase subunit 6 [Amadina fasciata]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 20/138 (14%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F  F F  ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2   MEFVLFLGFCF--VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSA 117
           +G ++V F++ + +       A+P  +     G +G SF IG++     V    F V   
Sbjct: 60  LGGMLVVFVYSVSL------AADPYPESWVDWGVVGYSFGIGLVVMIGFVVGGVFEVLVD 113

Query: 118 EGELS-------RLVFKG 128
           EG +S       RL F G
Sbjct: 114 EGVVSGGGLLSTRLDFSG 131


>gi|304365557|gb|ADM26363.1| NADH dehydrogenase subunit 6 [Geococcyx californianus]
          Length = 173

 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEP 86
          +       AEP
Sbjct: 73 L------AAEP 77


>gi|299889186|dbj|BAJ10303.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
 gi|299889187|dbj|BAJ10304.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
 gi|299889190|dbj|BAJ10306.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
 gi|299889191|dbj|BAJ10307.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
 gi|299889194|dbj|BAJ10309.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
 gi|299889195|dbj|BAJ10310.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
          Length = 175

 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|37596509|gb|AAQ95015.1| NADH dehydrogenase subunit 6 [Estrilda caerulescens]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|108793419|ref|YP_637009.1| NADH dehydrogenase subunit 6 [Nipponia nippon]
 gi|84579397|dbj|BAE72088.1| NADH dehydrogenase subunit 6 [Nipponia nippon]
          Length = 173

 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          I+    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|302201534|gb|ADL09096.1| NADH dehydrogenase subunit 6 [Turtur tympanistria]
          Length = 173

 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 24 SPYYGVVGLVVASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|153124377|ref|YP_001382106.1| NADH dehydrogenase subunit 6 [Martes melampus]
 gi|152962759|dbj|BAF73994.1| NADH dehydrogenase subunit 6 [Martes melampus]
 gi|295641171|gb|ADG22714.1| NADH dehydrogenase subunit 6 [Martes americana]
          Length = 177

 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
             K    LG+F +G+L+  L  C                + KG++VE
Sbjct: 85  SNKA--VLGAFIVGLLSELLTAC---------------YILKGDDVE 114


>gi|37596417|gb|AAQ94969.1| NADH dehydrogenase subunit 6 [Lagonosticta rara]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596421|gb|AAQ94971.1| NADH dehydrogenase subunit 6 [Lagonosticta rubricata congica]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|9230597|gb|AAF85924.1|AF171658_2 NADH dehydrogenase subunit 6 [Loxia curvirostra minor]
 gi|9230609|gb|AAF85932.1|AF171662_2 NADH dehydrogenase subunit 6 [Loxia curvirostra pusilla]
 gi|9230612|gb|AAF85934.1|AF171663_2 NADH dehydrogenase subunit 6 [Loxia curvirostra stricklandi]
          Length = 172

 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|299889198|dbj|BAJ10312.1| NADH dehydrogenase subunit 6 [Phoebastria nigripes]
 gi|299889199|dbj|BAJ10313.1| NADH dehydrogenase subunit 6 [Phoebastria nigripes]
          Length = 175

 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|37596561|gb|AAQ95041.1| NADH dehydrogenase subunit 6 [Lonchura cantans]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|21228586|ref|NP_634508.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
 gi|20907080|gb|AAM32180.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
          Length = 83

 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           +F + +L   ++V  +    ++   EL       +N+E IG +++T +  P E+   +LL
Sbjct: 8   AFLVCLLFVAVVVTGAFGTSWNTVSELPENPADPSNIEGIGMLIFTHFVAPFEVLSIVLL 67

Query: 155 LSMIGAI 161
            S+IGAI
Sbjct: 68  ASLIGAI 74


>gi|115494661|ref|YP_778771.1| NADH dehydrogenase subunit 6 [Monachus schauinslandi]
 gi|115344911|emb|CAJ56960.1| NADH dehydrogenase subunit 6 [Monachus schauinslandi]
          Length = 175

 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWI 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F +G+L+  L+VC
Sbjct: 85  SNKA-VLGAFIMGLLSELLLVC 105


>gi|94490653|ref|YP_588184.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus]
 gi|90990881|dbj|BAE92874.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus]
          Length = 173

 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            + F +      ++    V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+
Sbjct: 1   MTYFMFFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGMSFVSLVLFMVYL 60

Query: 64  GAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           G ++V F++ + +  D   E     +  G+ G  FI +LAA  +V
Sbjct: 61  GGMLVVFVYSVSLAADPFPEAWGDWRVVGY-GVSFIVVLAAGAVV 104


>gi|37596453|gb|AAQ94987.1| NADH dehydrogenase subunit 6 [Hypargos margaritatus]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|1171841|sp|P43198|NU6M_CEPGR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394668|emb|CAA52122.1| NADH dehydrogenase subunit 6 [Cepphus grylle]
 gi|21104318|emb|CAC80341.1| NADH dehydrogenase subunit 6 [Cepphus grylle]
          Length = 173

 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|37596521|gb|AAQ95021.1| NADH dehydrogenase subunit 6 [Nesocharis shelleyi]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|11643245|gb|AAG39483.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
          viridanus]
          Length = 172

 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKK 89
          +       A+P  +
Sbjct: 73 L------AADPYPE 80


>gi|310007457|gb|ADP00770.1| NADH dehydrogenase subunit 6 [Morone americana]
          Length = 172

 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  +  F+L  F  ++S   V    +P Y  F L+        + +  G  FVA+I ++
Sbjct: 1   MITYAACFFLVGF--VLSMVAVACNPSPFYGSFGLVAVAGFGCAVVIGFGGVFVALILVM 58

Query: 61  VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103
           +YVGA++V F++   +  D   E        G  G +F+G++AA
Sbjct: 59  IYVGAMLVVFVYSAALAADRYPESWGSGSVAGQAGGYFLGLMAA 102


>gi|19481554|gb|AAL88849.1|AF407116_1 NADH dehydrogenase subunit 6 [Erythrura gouldiae]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596511|gb|AAQ95016.1| NADH dehydrogenase subunit 6 [Estrilda perreini perreini]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V +  +P Y V  LI A V   G  + LG  FV+++ ++VY+G ++V F++ + +     
Sbjct: 19 VASNPSPYYGVMGLIVAAVAGCGWLVSLGLSFVSLVLVMVYLGGMLVVFVYSVSL----- 73

Query: 82 EVAEPRKKR 90
            A+P  + 
Sbjct: 74 -AADPYPES 81


>gi|5835973|ref|NP_008737.1|ND6_15093 NADH dehydrogenase subunit 6 [Smithornis sharpei]
 gi|3600011|gb|AAC35514.1| NADH dehydrogenase subunit VI [Smithornis sharpei]
          Length = 173

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F  L     ++    V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+G +
Sbjct: 4  FLLLLGMCFVLGGLAVASNPSPYYGVVGLVMASVVGCGWLMSLGLSFVSLVLFLVYLGGM 63

Query: 67 IVFFLF 72
          +V F++
Sbjct: 64 LVVFVY 69


>gi|108802840|ref|YP_637138.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
 gi|81295109|emb|CAH18602.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
          Length = 175

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G ++
Sbjct: 5  FFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64

Query: 68 VFFLFIIMMLD 78
          V F F +   D
Sbjct: 65 VVFAFCVGFTD 75


>gi|327555507|gb|AEB01120.1| NADH dehydrogenase subunit 6 [Crocodylus rhombifer]
          Length = 175

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)

Query: 8  FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
          F+L   + ++S  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G ++
Sbjct: 5  FFLLCCLMMVSVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64

Query: 68 VFFLFIIMMLD 78
          V F F +   D
Sbjct: 65 VVFAFCVGFTD 75


>gi|325126745|ref|YP_004285891.1| NADH dehydrogenase subunit 6 [Carduelis sinica]
 gi|324022961|gb|ADY15527.1| NADH dehydrogenase subunit 6 [Carduelis sinica]
          Length = 172

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|29569578|gb|AAO85257.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis]
 gi|76009046|gb|ABA38985.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis]
 gi|76009052|gb|ABA38988.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis]
 gi|281308292|gb|ADA58294.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis]
          Length = 172

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVMGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|19481584|gb|AAL88864.1|AF407131_1 NADH dehydrogenase subunit 6 [Fringilla coelebs]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 13 FMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          FM +   +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V 
Sbjct: 7  FMGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVV 66

Query: 70 FLFIIMMLDIDIEVAEPRKKR 90
          F++ + +       A+P  + 
Sbjct: 67 FVYSVSL------AADPYPES 81


>gi|9230588|gb|AAF85918.1|AF171655_2 NADH dehydrogenase subunit 6 [Loxia leucoptera leucoptera]
 gi|9230606|gb|AAF85930.1|AF171661_2 NADH dehydrogenase subunit 6 [Loxia leucoptera bifasciata]
          Length = 172

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|16797927|gb|AAL29216.1| NADH dehydrogenase subunit 6 [Numenius madagascariensis]
          Length = 173

 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|37596423|gb|AAQ94972.1| NADH dehydrogenase subunit 6 [Lagonosticta rubricata rubricata]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596513|gb|AAQ95017.1| NADH dehydrogenase subunit 6 [Mandingoa nitidula nitidula]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|89255434|ref|YP_514603.1| NADH dehydrogenase subunit 6 [Menura novaehollandiae]
 gi|42494924|gb|AAS17746.1| NADH dehydrogenase subunit 6 [Menura novaehollandiae]
          Length = 172

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24 SPYYGVVGLVLASVVGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87 RKK 89
            K
Sbjct: 78 FPK 80


>gi|295641157|gb|ADG22701.1| NADH dehydrogenase subunit 6 [Martes zibellina]
          Length = 177

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
             K    LG+F +G+L+  L  C                + KG++VE
Sbjct: 85  SNKA--VLGAFIVGLLSELLTAC---------------YILKGDDVE 114


>gi|108793363|ref|YP_637087.1| NADH dehydrogenase subunit 6 [Eudyptes chrysocome]
 gi|108755468|dbj|BAE95704.1| NADH dehydrogenase subunit 6 [Eudyptes chrysocome]
          Length = 172

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  + LG  FVA++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVALVLFMVYLGGMLVVFVY 69


>gi|37596427|gb|AAQ94974.1| NADH dehydrogenase subunit 6 [Lagonosticta virata]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596517|gb|AAQ95019.1| NADH dehydrogenase subunit 6 [Nigrita bicolor]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|19481548|gb|AAL88846.1|AF407113_1 NADH dehydrogenase subunit 6 [Ortygospiza atricollis]
          Length = 159

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|109676684|gb|ABG37771.1| NADH dehydrogenase subunit 6 [Pelecanus conspicillatus]
          Length = 173

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++ S  V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGSLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|16797929|gb|AAL29217.1| NADH dehydrogenase subunit 6 [Recurvirostra avosetta]
          Length = 173

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69


>gi|1171834|sp|P43192|NU6M_ALLAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394652|emb|CAA52120.1| NADH dehydrogenase subunit 6 [Alle alle]
 gi|21103999|emb|CAC80347.1| NADH dehydrogenase subunit 6 [Alle alle]
          Length = 173

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A +   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASIAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|37596563|gb|AAQ95042.1| NADH dehydrogenase subunit 6 [Lonchura malabarica]
          Length = 159

 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596539|gb|AAQ95030.1| NADH dehydrogenase subunit 6 [Stagonopleura guttata]
          Length = 159

 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|20330601|ref|NP_620339.1| NADH dehydrogenase subunit 6 [Haematopus ater]
 gi|20270025|gb|AAL74044.1| NADH dehydrogenase subunit 6 [Haematopus ater]
          Length = 173

 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69


>gi|124056424|ref|YP_001019022.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys]
 gi|124012083|gb|ABM87948.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys]
          Length = 175

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|77020034|ref|YP_337792.1| NADH dehydrogenase subunit 6 [Saccoglossus kowalevskii]
 gi|50511957|gb|AAQ92988.1| NADH dehydrogenase subunit 6 [Saccoglossus kowalevskii]
          Length = 159

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-IIMMLDIDIEVA 84
          R+P +S   L+ A    +G+ +L GA FV +I  ++Y+G ++V F +   +  DI  EV 
Sbjct: 20 RSPYFSALGLVLATCGLSGVLMLGGAVFVGLILFLMYLGGMLVVFAYSAALAADIYPEVG 79

Query: 85 EPRK 88
            + 
Sbjct: 80 AGKG 83


>gi|16797946|gb|AAL29225.1| NADH dehydrogenase subunit 6 [Charadrius alexandrinus]
          Length = 173

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  F++++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFISLVLFMVYLGGMLVVFVY 69


>gi|37596533|gb|AAQ95027.1| NADH dehydrogenase subunit 6 [Neochmia temporalis]
          Length = 159

 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|9230603|gb|AAF85928.1|AF171660_2 NADH dehydrogenase subunit 6 [Loxia leucoptera megaplaga]
          Length = 172

 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|5081427|gb|AAD39376.1|AF123896_1 NADH dehydrogenase subunit 6 [Balearica regulorum]
          Length = 173

 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 75 MMLDIDIEVAEPRKKRGFLGSF 96
          +  D   E     +  G+   F
Sbjct: 73 LAADPYPEAWGDWRVMGYTAGF 94


>gi|195661126|ref|YP_002117878.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|195182371|emb|CAQ68428.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097235|emb|CAY39899.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097263|emb|CAY39952.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097277|emb|CAY39978.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097291|emb|CAY40005.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097431|emb|CAY40268.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097445|emb|CAY40295.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097459|emb|CAY40324.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097473|emb|CAY40350.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097487|emb|CAY40376.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097501|emb|CAY40402.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097515|emb|CAY40429.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097613|emb|CAY40614.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
          Length = 175

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  +VY+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F +G+L+  LI C
Sbjct: 85  SNKA-VLGAFIVGLLSELLIAC 105


>gi|37596437|gb|AAQ94979.1| NADH dehydrogenase subunit 6 [Clytospiza monteiri]
          Length = 159

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596543|gb|AAQ95032.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
          Length = 159

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596435|gb|AAQ94978.1| NADH dehydrogenase subunit 6 [Lagonosticta nitidula]
          Length = 159

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|1171848|sp|P43204|NU6M_SYNAN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394684|emb|CAA52125.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus]
          Length = 173

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
           ++    V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13  VLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGMSFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +  D   E     +  G+ G  FI +LAA  +V
Sbjct: 73  LAADPFPEAWGDWRVVGY-GVSFIVVLAAGAVV 104


>gi|157488875|gb|ABV57841.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y    L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGAVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|5081431|gb|AAD39378.1|AF123898_1 NADH dehydrogenase subunit 6 [Grus paradisea]
 gi|224504036|gb|ACN53617.1| NADH dehydrogenase subunit 6 [Grus paradisea]
          Length = 173

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|224503994|gb|ACN53578.1| NADH dehydrogenase subunit 6 [Balearica regulorum]
          Length = 173

 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 75 MMLDIDIEVAEPRKKRGFLGSF 96
          +  D   E     +  G+   F
Sbjct: 73 LAADPYPEAWGDWRVMGYTAGF 94


>gi|120944014|ref|YP_973113.1| NADH dehydrogenase subunit 6 [Ursus thibetanus mupinensis]
 gi|89112907|gb|ABD61071.1| NADH dehydrogenase subunit 6 [Ursus thibetanus mupinensis]
          Length = 175

 Score = 34.7 bits (78), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M    +    P
Sbjct: 25  SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAM----VTERYP 80

Query: 87  R---KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133
                 +  LG+F +G+L+  LI C      +  + +   +VFK N V +
Sbjct: 81  EVWVSNKAVLGAFIVGLLSELLIAC------YVLKDDEVEIVFKFNGVGD 124


>gi|37596493|gb|AAQ95007.1| NADH dehydrogenase subunit 6 [Euschistospiza cinereovinacea
          cinereovinacea]
          Length = 159

 Score = 34.7 bits (78), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87 RKKR 90
            + 
Sbjct: 78 YPES 81


>gi|14141890|ref|NP_115440.1| NADH dehydrogenase subunit 6 [Dromaius novaehollandiae]
 gi|14039565|gb|AAK53305.1|AF338711_13 NADH dehydrogenase subunit VI [Dromaius novaehollandiae]
          Length = 173

 Score = 34.7 bits (78), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 35/69 (50%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F +      I+ +  V +  +P Y V  L+   V   G  L LG  F++++  +VY+
Sbjct: 1  MTYFIFFLGLCFILGALAVASNPSPYYGVLGLVLGSVVGCGWLLSLGVSFISLVLFLVYL 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFVY 69


>gi|68989173|ref|YP_254622.1|ND6_18490 NADH dehydrogenase subunit 6 [Thalassarche melanophrys]
 gi|37724198|gb|AAO18360.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys]
          Length = 175

 Score = 34.7 bits (78), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|325126773|ref|YP_004285917.1| NADH dehydrogenase subunit 6 [Carduelis spinus]
 gi|324022975|gb|ADY15540.1| NADH dehydrogenase subunit 6 [Carduelis spinus]
          Length = 172

 Score = 34.7 bits (78), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|84488802|ref|YP_448905.1| NADH dehydrogenase subunit 6 [Malacochersus tornieri]
 gi|67005731|gb|AAY62522.1| NADH dehydrogenase subunit 6 [Malacochersus tornieri]
          Length = 174

 Score = 34.7 bits (78), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
          +P Y VFSL+   V   G+   +G  F+++I  +VY+G ++V F
Sbjct: 24 SPYYGVFSLVLGSVFGCGMLAGMGGSFISLILFLVYLGGMLVIF 67


>gi|76801795|ref|YP_326803.1| NADH dehydrogenase subunit J [Natronomonas pharaonis DSM 2160]
 gi|76557660|emb|CAI49243.1| NADH dehydrogenase-like complex, subunit J1 [Natronomonas
          pharaonis DSM 2160]
          Length = 91

 Score = 34.7 bits (78), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          +S  VV  R+  +S   L  A  + A  +++L AEF+A+I ++VYVG V++   F +M++
Sbjct: 21 ASLGVVLARDVWHSALFLGAALFSVAVHYVMLRAEFLAVIQVLVYVGGVLILITFAVMLV 80

Query: 78 DID 80
            D
Sbjct: 81 RQD 83


>gi|256427298|ref|YP_003127062.1| NADH dehydrogenase subunit 6 [Threskiornis aethiopicus]
 gi|255709637|gb|ACU30726.1| NADH dehydrogenase subunit 6 [Threskiornis aethiopicus]
          Length = 173

 Score = 34.7 bits (78), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVA 72

Query: 75 MMLDIDIEVAEPRKKRGF 92
          +  D+  E     +  G+
Sbjct: 73 LAADLFPETWGDWRVVGY 90


>gi|38707596|ref|NP_944735.1| NADH dehydrogenase subunit 6 [Pontoporia blainvillei]
 gi|38602555|emb|CAD88012.1| NADH6 protein [Pontoporia blainvillei]
          Length = 173

 Score = 34.7 bits (78), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI       G+   LG  F+ ++  ++Y+G ++V F +   M   +   A  
Sbjct: 25  SPIYGGVGLIVGGAMGCGIVFSLGGPFLGLMVFLIYLGGMLVVFGYTTAMATEEYPEAWI 84

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
             K   LGSF +G LA E +V      V   EGE + 
Sbjct: 85  SNKI-VLGSFVLG-LAVEFLVVG---YVLGVEGETAE 116


>gi|37596553|gb|AAQ95037.1| NADH dehydrogenase subunit 6 [Lonchura bicolor bicolor]
          Length = 159

 Score = 34.7 bits (78), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|19481550|gb|AAL88847.1|AF407114_1 NADH dehydrogenase subunit 6 [Amandava subflava]
          Length = 159

 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|59410765|gb|AAW84488.1| NADH dehydrogenase subunit 6 [Vidua wilsoni]
          Length = 159

 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +     
Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL----- 73

Query: 82 EVAEPRKKR 90
            A+P  K 
Sbjct: 74 -AADPYPKT 81


>gi|730208|sp|Q06059|NU6M_ANAPL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|13970|emb|CAA39143.1| ND6 [Anas platyrhynchos]
 gi|1945490|gb|AAB52615.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
          Length = 81

 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           +P Y V  L+ A V   G  L LG  FVA++  +VY G ++V F++ + +       AE
Sbjct: 23 PSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYFGGMLVVFVYSVAL------AAE 76

Query: 86 PRKKR 90
          P  + 
Sbjct: 77 PFPEA 81


>gi|37596507|gb|AAQ95014.1| NADH dehydrogenase subunit 6 [Estrilda atricapilla]
          Length = 159

 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87 RKKR 90
            + 
Sbjct: 78 YPES 81


>gi|218157286|ref|YP_002364441.1| NADH dehydrogenase subunit 6 [Eudynamys taitensis]
 gi|166093095|gb|ABY82528.1| NADH dehydrogenase subunit 6 [Eudynamys taitensis]
          Length = 173

 Score = 34.7 bits (78), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|153124134|ref|YP_001382357.1| NADH dehydrogenase subunit 6 [Enhydra lutris]
 gi|152962773|dbj|BAF74007.1| NADH dehydrogenase subunit 6 [Enhydra lutris]
          Length = 177

 Score = 34.7 bits (78), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84

Query: 86  PRKKRGFLGSFFIGILAAELIVC 108
             K    LG+F +G+L+  L  C
Sbjct: 85  SNKA--VLGAFIVGLLSELLTAC 105


>gi|19481532|gb|AAL88838.1|AF407105_1 NADH dehydrogenase subunit 6 [Anomalospiza imberbis imberbis]
          Length = 159

 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 4/144 (2%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 13  VLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVYLGGMLVVFVYSV- 71

Query: 76  MLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
            L  D    E     G +G  F +G++    +V +  F + S  G +S +      ++  
Sbjct: 72  SLAAD-PYPEAWASWGVVGYGFGLGLVVMVGLVVSGVFGLLSNGGTVSGVGLLSVQLDLS 130

Query: 135 G-KVLYTQYAYPLEISGFILLLSM 157
           G  VLY++ A  L I G+ LLL++
Sbjct: 131 GVSVLYSEGAGLLMIGGWGLLLTL 154


>gi|1304734|gb|AAA99091.1| NADH dehydrogenase subunit 6 [Grus vipio]
 gi|224504148|gb|ACN53721.1| NADH dehydrogenase subunit 6 [Grus vipio]
          Length = 173

 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 9  YLFSFMA---IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          Y   FM    ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G 
Sbjct: 3  YFMVFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGG 62

Query: 66 VIVFFLF 72
          ++V F++
Sbjct: 63 MLVVFVY 69


>gi|295641227|gb|ADG22766.1| NADH dehydrogenase subunit 6 [Melogale moschata]
          Length = 177

 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
             K    LG+F +G+L+  L  C                + KG++VE
Sbjct: 85  SNKA--VLGAFIVGLLSELLTAC---------------YILKGDDVE 114


>gi|37596565|gb|AAQ95043.1| NADH dehydrogenase subunit 6 [Lemuresthes nana]
          Length = 159

 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|67005591|gb|AAY62392.1| NADH dehydrogenase subunit 6 [Testudo hermanni]
          Length = 175

 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V    +P Y VFSL+       G+ + +G  FV++I  ++Y+G ++V F +   +     
Sbjct: 19 VSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYMGGMLVIFAYSCAL----- 73

Query: 82 EVAEPRKKR 90
            AEP    
Sbjct: 74 -AAEPYPAS 81


>gi|28916747|ref|NP_803168.1| NADH dehydrogenase subunit 6 [Pisaster ochraceus]
 gi|28881692|emb|CAD70486.1| NADH dehydrogenase subunit 6 [Pisaster ochraceus]
          Length = 162

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 82/170 (48%), Gaps = 11/170 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +F+  F FM ++ S LV    +P Y    L+   ++   L  L+G  F+A++ L++YVG 
Sbjct: 2   IFYLTFIFM-LLGSTLVFYSLSPYYGALGLVIVSMSGCILCSLVGLSFMALVLLLIYVGG 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F++   +      V     +        + +    ++  + NF +     E+  + 
Sbjct: 61  MLVVFVYSSALSAERYPVVSNVNEV-------LVLFLILVLWVSLNFDLLLNFSEVGWVT 113

Query: 126 FKGNNVENI-GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +  NNV+ + G VLY+Q  + L + G+IL + +I A+V+      ++ + 
Sbjct: 114 Y--NNVDLVGGGVLYSQVWWYLVVGGYILFVGLIVALVVTYGSEYNVLKA 161


>gi|295641101|gb|ADG22649.1| NADH dehydrogenase subunit 6 [Mustela nivalis]
          Length = 177

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIISGAIGCGIVLCFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
             K    LG+F +G+L+  L  C                + KG++VE
Sbjct: 85  SNKAV--LGAFIVGLLSELLTAC---------------YILKGDDVE 114


>gi|37596549|gb|AAQ95035.1| NADH dehydrogenase subunit 6 [Aidemosyne modesta]
          Length = 159

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|19481580|gb|AAL88862.1|AF407129_1 NADH dehydrogenase subunit 6 [Carduelis pinus]
          Length = 159

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87 RKKR 90
            + 
Sbjct: 78 YPES 81


>gi|11643425|gb|AAG39573.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
          Length = 172

 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 20/158 (12%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ +  L  D    E 
Sbjct: 24  SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV-SLAAD-PYPEA 81

Query: 87  RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------RLVFKGNNVENIGKVL 138
               G +G  F +G++     V +  F V    G ++       RL F G  V       
Sbjct: 82  WGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTVNNVGVSFIRLDFGGAAVP------ 135

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           Y+  A    I G+ LLL++     ++L   R + R  I
Sbjct: 136 YSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169


>gi|16797940|gb|AAL29222.1| NADH dehydrogenase subunit 6 [Numenius arquata]
          Length = 173

 Score = 34.7 bits (78), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69


>gi|19481578|gb|AAL88861.1|AF407128_1 NADH dehydrogenase subunit 6 [Passer domesticus]
          Length = 159

 Score = 34.7 bits (78), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F + + +     
Sbjct: 19 VASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFAYSVSL----- 73

Query: 82 EVAEPRKK 89
            A+P  +
Sbjct: 74 -AADPYPE 80


>gi|84488631|ref|YP_448827.1| NADH dehydrogenase subunit 6 [Psammobates pardalis]
 gi|67005644|gb|AAY62441.1| NADH dehydrogenase subunit 6 [Psammobates pardalis]
          Length = 174

 Score = 34.7 bits (78), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SL+       G  + +G  F++++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMIGVSCSSSPYYGVLSLVLGAAFGCGALVGMGGSFISLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGI 100
           +V F +   +       AEP     G LG+F  G+
Sbjct: 64  LVIFAYSSAL------AAEPYPGGWGGLGAFIYGL 92


>gi|57854578|ref|YP_187586.1| NADH dehydrogenase subunit 6 [Asterias amurensis]
 gi|57506705|dbj|BAD86694.1| NADH dehydrogenase subunit 6 [Asterias amurensis]
          Length = 162

 Score = 34.7 bits (78), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    + ++ S LV    +P Y    L+   ++   L  L+G  F+A++ L++Y+G ++
Sbjct: 3   FYFTFILMLLGSTLVFYSLSPYYGALGLVIVAMSGCILCGLVGLSFMALVLLLIYIGGML 62

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F++   +      V    K+   L  F I +L   L     NF +     ELS +   
Sbjct: 63  VVFVYSSALSAERYPVVSNIKEVTIL--FLILVLWISL-----NFDLVLNLSELSWM--S 113

Query: 128 GNNVENIGK-VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            +N++ IG   LY    + L + G+IL +++I A+V+      ++ + 
Sbjct: 114 HSNLDLIGSGNLYNNVWWYLGVGGYILFIALIVALVITYGSEYNVLKA 161


>gi|195661267|ref|YP_002117930.1| NADH dehydrogenase subunit 6 [Arctodus simus]
 gi|195182401|emb|CAQ68454.1| NADH dehydrogenase subunit 6 [Arctodus simus]
          Length = 175

 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIVSGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWI 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F +G+L+  L+VC
Sbjct: 85  SNKA-VLGAFIVGLLSELLVVC 105


>gi|295641114|gb|ADG22661.1| NADH dehydrogenase subunit 6 [Mustela kathiah]
          Length = 177

 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 16/106 (15%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
             K   LG+F +G+L+  L  C                + KG++VE
Sbjct: 85  SNKA-VLGAFIVGLLSELLTAC---------------YILKGDDVE 114


>gi|84488760|ref|YP_448853.1| NADH dehydrogenase subunit 6 [Indotestudo forstenii]
 gi|67005675|gb|AAY62470.1| NADH dehydrogenase subunit 6 [Indotestudo forstenii]
          Length = 174

 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 34/64 (53%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F  LF F  +     V    +P Y VFS++       G+ +++G  FV+++  ++Y+G +
Sbjct: 4  FMILFGFCFVFGMVGVSCSLSPYYGVFSMVLGAAFGCGMLVVMGGSFVSLVLFLIYLGGM 63

Query: 67 IVFF 70
          +V F
Sbjct: 64 LVIF 67


>gi|224588030|ref|YP_002640560.1| NADH dehydrogenase subunit 6 [Martes flavigula]
 gi|223951391|gb|ACN29646.1| NADH dehydrogenase subunit 6 [Martes flavigula]
 gi|295641199|gb|ADG22740.1| NADH dehydrogenase subunit 6 [Martes flavigula]
          Length = 177

 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84

Query: 86  PRKKRGFLGSFFIGILAAELIVC 108
             K    LG+F +G+L+  L  C
Sbjct: 85  SNKA--VLGAFIVGLLSELLTAC 105


>gi|37596459|gb|AAQ94990.1| NADH dehydrogenase subunit 6 [Uraeginthus granatina]
          Length = 159

 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596429|gb|AAQ94975.1| NADH dehydrogenase subunit 6 [Lagonosticta senegala rendalli]
          Length = 159

 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87 RKKR 90
            + 
Sbjct: 78 YPES 81


>gi|76009022|gb|ABA38973.1| NADH dehydrogenase subunit 6 [Leucopternis plumbeus]
          Length = 172

 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVY 69


>gi|162145729|gb|ABX82902.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097305|emb|CAY40031.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097333|emb|CAY40083.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097347|emb|CAY40109.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097361|emb|CAY40136.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097375|emb|CAY40163.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097417|emb|CAY40242.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097557|emb|CAY40510.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097571|emb|CAY40536.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097585|emb|CAY40562.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097599|emb|CAY40588.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097655|emb|CAY40694.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
          Length = 175

 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  +VY+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWI 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F +G+L+  LI C
Sbjct: 85  SNKA-VLGAFIVGLLSELLIAC 105


>gi|9230579|gb|AAF85912.1|AF171652_2 NADH dehydrogenase subunit 6 [Loxia curvirostra himalayensis]
          Length = 172

 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 29/46 (63%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++
Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVY 69


>gi|9230591|gb|AAF85920.1|AF171656_2 NADH dehydrogenase subunit 6 [Loxia scotica]
          Length = 172

 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 29/46 (63%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++
Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVY 69


>gi|76009080|gb|ABA39002.1| NADH dehydrogenase subunit 6 [Leucopternis schistaceus]
 gi|281308368|gb|ADA58332.1| NADH dehydrogenase subunit 6 [Leucopternis schistaceus]
          Length = 172

 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|280978165|ref|YP_003345110.1| NADH dehydrogenase subunit 6 [Cyema atrum]
 gi|271280685|dbj|BAI53533.1| NADH dehydrogenase subunit 6 [Cyema atrum]
          Length = 175

 Score = 34.7 bits (78), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 6  LFFYLFSFMAIISSFLVVTVR--NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          +F+ + SF+ ++   +VV     +P + V  L+ A     GL +  G  F+A++ ++VY+
Sbjct: 1  MFYMILSFLTVMLCGVVVVCSGPSPYFGVMGLVAASAGGCGLLIGYGGSFIAVVLILVYL 60

Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKK 89
          G ++V F +   +       AEP  +
Sbjct: 61 GGMLVVFAYSAAL------AAEPYPE 80


>gi|1171849|sp|P43205|NU6M_SYNHY RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394686|emb|CAA52126.1| NADH dehydrogenase subunit 6 [Synthliboramphus hypoleucus]
          Length = 173

 Score = 34.7 bits (78), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 24 SPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|212725604|ref|YP_002317348.1| NADH dehydrogenase subunit 6 [Martes zibellina]
 gi|211997673|gb|ACJ14800.1| NADH dehydrogenase subunit 6 [Martes zibellina]
          Length = 177

 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
             K    LG+F +G+L+  L  C                + KG++VE
Sbjct: 85  SNKA--VLGAFIVGLLSELLTAC---------------YILKGDDVE 114


>gi|37596505|gb|AAQ95013.1| NADH dehydrogenase subunit 6 [Estrilda nonnula]
          Length = 159

 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87 RKKR 90
            + 
Sbjct: 78 YPES 81


>gi|9230582|gb|AAF85914.1|AF171653_2 NADH dehydrogenase subunit 6 [Loxia curvirostra luzonensis]
 gi|9230594|gb|AAF85922.1|AF171657_2 NADH dehydrogenase subunit 6 [Loxia curvirostra curvirostra]
 gi|9230615|gb|AAF85936.1|AF171664_2 NADH dehydrogenase subunit 6 [Loxia pytyopsittacus]
          Length = 172

 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 29/46 (63%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++
Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVY 69


>gi|9230585|gb|AAF85916.1|AF171654_2 NADH dehydrogenase subunit 6 [Loxia curvirostra japonica]
          Length = 172

 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 29/46 (63%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++
Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVY 69


>gi|76009038|gb|ABA38981.1| NADH dehydrogenase subunit 6 [Leucopternis lacernulatus]
          Length = 172

 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|37596547|gb|AAQ95034.1| NADH dehydrogenase subunit 6 [Taeniopygia bichenovii]
          Length = 159

 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|295641073|gb|ADG22623.1| NADH dehydrogenase subunit 6 [Mustela sibirica]
 gi|295641087|gb|ADG22636.1| NADH dehydrogenase subunit 6 [Mustela putorius]
          Length = 177

 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 16/106 (15%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIISGAIGCGIVLCFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
             K   LG+F +G+L+  L  C                + KG++VE
Sbjct: 85  SNKA-VLGAFIVGLLSELLTAC---------------YILKGDDVE 114


>gi|37596431|gb|AAQ94976.1| NADH dehydrogenase subunit 6 [Lagonosticta senegala rhodopsis]
          Length = 159

 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|19481534|gb|AAL88839.1|AF407106_1 NADH dehydrogenase subunit 6 [Anomalospiza imberbis butleri]
          Length = 159

 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 4/144 (2%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + 
Sbjct: 13  VLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVYLGGMLVVFVYSV- 71

Query: 76  MLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
            L  D    E     G +G  F +G++    +V +  F + S  G +S +      ++  
Sbjct: 72  SLAAD-PYPEAWASWGVVGYGFGLGLVVMVGLVVSGVFGLLSNGGTVSGVGLLSVQLDLS 130

Query: 135 G-KVLYTQYAYPLEISGFILLLSM 157
           G  VLY++ A  L I G+ LLL++
Sbjct: 131 GVSVLYSEGAGLLMIGGWGLLLTL 154


>gi|11643337|gb|AAG39529.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|261864031|gb|ACY01517.1| NADH dehydrogenase subunit 6 [Apteryx australis mantelli]
          Length = 173

 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+   V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 24 SPYYGVLGLVMGSVAGCGCLLSLGVSFVSLVLFLVYLGGMLVVFVY 69


>gi|281308328|gb|ADA58312.1| NADH dehydrogenase subunit 6 [Geranospiza caerulescens]
          Length = 172

 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|155624699|gb|ABU24736.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY  F LI A     G+ L  G  F+ ++  ++Y+G ++V F +   M       A  
Sbjct: 25  SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   L  F  G+LA  L  C
Sbjct: 85  SNKA-VLVMFITGVLAELLTAC 105


>gi|281308240|gb|ADA58268.1| NADH dehydrogenase subunit 6 [Buteogallus aequinoctialis]
 gi|281308242|gb|ADA58269.1| NADH dehydrogenase subunit 6 [Buteogallus aequinoctialis]
          Length = 172

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|37596497|gb|AAQ95009.1| NADH dehydrogenase subunit 6 [Uraeginthus angolensis]
          Length = 159

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|21306244|gb|AAM45928.1| NADH dehydrogenase subunit 6 [Chrysococcyx flavigularis]
          Length = 156

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  F++++  +VY+G ++V F++
Sbjct: 12 VLGGLAVASNPSPYYGVVGLVLASVTGCGWLLSLGVSFMSLVLFMVYLGGMLVVFVY 68


>gi|281308340|gb|ADA58318.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus solitarius]
          Length = 172

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|37596441|gb|AAQ94981.1| NADH dehydrogenase subunit 6 [Pytilia melba grotei]
          Length = 159

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|5081425|gb|AAD39375.1|AF123895_1 NADH dehydrogenase subunit 6 [Balearica pavonina]
          Length = 173

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69


>gi|331087471|gb|AEC53548.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus]
          Length = 173

 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|108773226|ref|YP_635801.1| NADH dehydrogenase subunit 6 [Chara vulgaris]
 gi|122177789|sp|Q1ACE6|NU6C_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
          chloroplastic; AltName: Full=NAD(P)H dehydrogenase
          subunit 6; AltName: Full=NADH-plastoquinone
          oxidoreductase subunit 6
 gi|77157882|gb|ABA61923.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chara vulgaris]
          Length = 178

 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M  Q +  YL      I +  V+   N +Y+  SL       A L+L   A+F+A+  ++
Sbjct: 6  MSYQLIVAYLIQLGIYIGALAVIFFNNIVYAAISLALVLSLIALLYLFFDADFLAVTQIL 65

Query: 61 VYVGAVIVFFLFIIMMLDI 79
          +YVGA+ V  LF IM++ +
Sbjct: 66 IYVGAINVLILFAIMLISL 84


>gi|302201536|gb|ADL09097.1| NADH dehydrogenase subunit 6 [Crotophaga ani]
          Length = 173

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + +       AEP
Sbjct: 24 SPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVSL------AAEP 77


>gi|37596519|gb|AAQ95020.1| NADH dehydrogenase subunit 6 [Parmoptila jamesoni]
          Length = 160

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|37596463|gb|AAQ94992.1| NADH dehydrogenase subunit 6 [Estrilda troglodytes]
 gi|37596465|gb|AAQ94993.1| NADH dehydrogenase subunit 6 [Estrilda melpoda]
 gi|37596467|gb|AAQ94994.1| NADH dehydrogenase subunit 6 [Estrilda rhodopyga]
          Length = 159

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87 RKKR 90
            + 
Sbjct: 78 YPES 81


>gi|301503285|gb|ADK76205.1| NADH dehydrogenase subunit 6 [Brotogeris cyanoptera]
          Length = 167

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++++ LV +  +P Y    L F  V   G  + LGA FVA+   +VY+G ++V F++
Sbjct: 13 VLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVY 69


>gi|76009040|gb|ABA38982.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus]
 gi|76009042|gb|ABA38983.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus]
 gi|281308334|gb|ADA58315.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus]
          Length = 172

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|281308252|gb|ADA58274.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus]
 gi|281308254|gb|ADA58275.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus]
 gi|281308256|gb|ADA58276.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus]
 gi|281308320|gb|ADA58308.1| NADH dehydrogenase subunit 6 [Buteogallus subtilis]
          Length = 172

 Score = 34.3 bits (77), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|19481558|gb|AAL88851.1|AF407118_1 NADH dehydrogenase subunit 6 [Quelea quelea]
          Length = 159

 Score = 34.3 bits (77), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPEA 81


>gi|281308366|gb|ADA58331.1| NADH dehydrogenase subunit 6 [Leucopternis plumbeus]
          Length = 156

 Score = 34.3 bits (77), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVY 69


>gi|37596461|gb|AAQ94991.1| NADH dehydrogenase subunit 6 [Estrilda paludicola]
          Length = 159

 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +     
Sbjct: 19 VASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73

Query: 82 EVAEPRKKR 90
            A+P  + 
Sbjct: 74 -AADPYPES 81


>gi|19343515|ref|NP_597979.1| NADH dehydrogenase subunit 6 [Ursus arctos]
 gi|19110571|gb|AAL85180.1|AF303110_13 NADH dehydrogenase subunit 6 [Ursus arctos]
          Length = 175

 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F +G+L+  LI C
Sbjct: 85  SNKA-VLGAFIVGLLSELLIAC 105


>gi|29569580|gb|AAO85258.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga urubitinga]
 gi|76009060|gb|ABA38992.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga]
 gi|281308326|gb|ADA58311.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga]
          Length = 172

 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|326535894|ref|YP_004300341.1| NADH dehydrogenase subunit 6 [Emberiza chrysophrys]
 gi|325305644|gb|ADZ10809.1| NADH dehydrogenase subunit 6 [Emberiza chrysophrys]
          Length = 172

 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 19 VASNPSPYYGVLGLVVAAVAGCGWLVSLGVPFVSLVLVMVYLGGMLVVFVY 69


>gi|37596419|gb|AAQ94970.1| NADH dehydrogenase subunit 6 [Lagonosticta larvata nigricollis]
          Length = 159

 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVIGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|242097389|emb|CAY40189.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097403|emb|CAY40216.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097627|emb|CAY40640.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
          Length = 175

 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  +VY+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIVSGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWI 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F +G+L+  LI C
Sbjct: 85  SNKA-VLGAFIVGLLSELLIAC 105


>gi|37596559|gb|AAQ95040.1| NADH dehydrogenase subunit 6 [Lonchura castaneothorax]
          Length = 158

 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +     
Sbjct: 19 VASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73

Query: 82 EVAEPRKKR 90
            A+P  + 
Sbjct: 74 -AADPYPES 81


>gi|16797938|gb|AAL29221.1| NADH dehydrogenase subunit 6 [Limosa lapponica]
          Length = 173

 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|295641241|gb|ADG22779.1| NADH dehydrogenase subunit 6 [Arctonyx collaris]
          Length = 177

 Score = 34.3 bits (77), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 18/107 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
             K    LG+F +G+L+  L+ C                + KG++VE
Sbjct: 85  SNKA--VLGAFIVGLLSELLMAC---------------YILKGDDVE 114


>gi|159524402|ref|YP_001542753.1| NADH dehydrogenase subunit 6 [Melursus ursinus]
 gi|121592314|gb|ABM63250.1| NADH dehydrogenase subunit 6 [Melursus ursinus]
 gi|195182417|emb|CAQ68467.1| NADH dehydrogenase subunit 6 [Melursus ursinus]
          Length = 175

 Score = 34.3 bits (77), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVC 108
             K    LG+F +G+L+  LI C
Sbjct: 85  SNKAV--LGAFIVGLLSELLIAC 105


>gi|300087938|ref|YP_003758460.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527671|gb|ADJ26139.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 162

 Score = 34.3 bits (77), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F++F+   I ++  VV  RN   +   LI  F   AGLF+ L A+F+A I +++YVG+
Sbjct: 3   LAFFIFASGIIGTALAVVLFRNIFRASLMLILCFFLVAGLFVTLYADFLAAIQVLIYVGS 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + +  + + +ML  +I+       R    + F G     +++  S       +  +S L 
Sbjct: 63  ISI-LIILAIMLTREIQTGN-LSNRLRAPALFTGAGVTLVLILTS----VGTDWNVSTLK 116

Query: 126 FKGNNVENIGKVLYTQYAYPLEI--SGFILLLSMIGAIVLMLRHRRDIK 172
              N    + ++L++  ++ + +  +  +LL ++IGAI+L+   R D K
Sbjct: 117 PAENTTALLAELLFSTDSFMMAVAMAAILLLTAIIGAIILV---RSDDK 162


>gi|19481544|gb|AAL88844.1|AF407111_1 NADH dehydrogenase subunit 6 [Estrilda astrild]
          Length = 159

 Score = 34.3 bits (77), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPES 81


>gi|21306172|gb|AAM45892.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306174|gb|AAM45893.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306176|gb|AAM45894.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306178|gb|AAM45895.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306180|gb|AAM45896.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306182|gb|AAM45897.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306184|gb|AAM45898.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306186|gb|AAM45899.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306188|gb|AAM45900.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306190|gb|AAM45901.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306192|gb|AAM45902.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306194|gb|AAM45903.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306196|gb|AAM45904.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306198|gb|AAM45905.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306200|gb|AAM45906.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306202|gb|AAM45907.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306204|gb|AAM45908.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306206|gb|AAM45909.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306208|gb|AAM45910.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306210|gb|AAM45911.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306212|gb|AAM45912.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
          Length = 156

 Score = 34.3 bits (77), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 12 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 68


>gi|19481540|gb|AAL88842.1|AF407109_1 NADH dehydrogenase subunit 6 [Vidua macroura]
          Length = 159

 Score = 34.3 bits (77), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +     
Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73

Query: 82 EVAEPRKKR 90
            A+P  + 
Sbjct: 74 -AADPYPET 81


>gi|295641185|gb|ADG22727.1| NADH dehydrogenase subunit 6 [Martes foina]
          Length = 177

 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
             K    LG+F +G+L+  L  C                + KG++VE
Sbjct: 85  SNKA--VLGAFIVGLLSELLTAC---------------YILKGDDVE 114


>gi|224504008|gb|ACN53591.1| NADH dehydrogenase subunit 6 [Balearica pavonina]
          Length = 173

 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69


>gi|108793377|ref|YP_637100.1| NADH dehydrogenase subunit 6 [Gavia pacifica]
 gi|108755482|dbj|BAE95717.1| NADH dehydrogenase subunit 6 [Gavia pacifica]
          Length = 173

 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 24 SPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69


>gi|86742500|ref|YP_482900.1| cytochrome-c oxidase [Frankia sp. CcI3]
 gi|86569362|gb|ABD13171.1| Cytochrome-c oxidase [Frankia sp. CcI3]
          Length = 609

 Score = 34.3 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 21/127 (16%)

Query: 1   MVMQSLFFYL---------FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGA 51
           ++ Q LF+Y            F  +IS  L V  R P++    L+FA +  A L +++ A
Sbjct: 259 LLWQHLFWYFGHPEVYIIALPFFGVISEILPVFSRKPLFGYKGLVFATIGIAALSVVVWA 318

Query: 52  E-----------FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIG 99
                       F A+++ ++ V   I FF +I  M    +    P     GFL +F  G
Sbjct: 319 HHMFVTGAVLLPFFALMSFLIAVPTGIKFFNWIGTMWRGQLTFETPMLFAIGFLVTFLFG 378

Query: 100 ILAAELI 106
            L   L+
Sbjct: 379 GLTGVLL 385


>gi|19481542|gb|AAL88843.1|AF407110_1 NADH dehydrogenase subunit 6 [Hypargos niveoguttatus]
          Length = 159

 Score = 34.3 bits (77), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
          +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +       A+P
Sbjct: 24 SPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77

Query: 87 RKKR 90
            + 
Sbjct: 78 YPES 81


>gi|331087469|gb|AEC53547.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus]
          Length = 172

 Score = 34.3 bits (77), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|21306216|gb|AAM45914.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
 gi|21306218|gb|AAM45915.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
 gi|21306220|gb|AAM45916.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
 gi|21306222|gb|AAM45917.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
 gi|21306224|gb|AAM45918.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
 gi|21306226|gb|AAM45919.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
          Length = 156

 Score = 34.3 bits (77), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 12 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 68


>gi|331087464|gb|AEC53545.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus]
 gi|331087467|gb|AEC53546.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus]
          Length = 172

 Score = 34.3 bits (77), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69


>gi|288898457|gb|ADC66763.1| NADH dehydrogenase subunit 6 [Ursus arctos]
          Length = 175

 Score = 34.3 bits (77), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
             K   LG+F +G+L+  LI C
Sbjct: 85  SNKA-VLGAFIVGLLSELLIAC 105


>gi|37596495|gb|AAQ95008.1| NADH dehydrogenase subunit 6 [Uraeginthus cyanocephalus]
          Length = 159

 Score = 34.3 bits (77), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +     
Sbjct: 19 VASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73

Query: 82 EVAEPRKKR 90
            A+P  + 
Sbjct: 74 -AADPYPES 81


>gi|37596499|gb|AAQ95010.1| NADH dehydrogenase subunit 6 [Uraeginthus bengalus]
          Length = 159

 Score = 34.3 bits (77), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +     
Sbjct: 19 VASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73

Query: 82 EVAEPRKKR 90
            A+P  + 
Sbjct: 74 -AADPYPES 81


>gi|19481568|gb|AAL88856.1|AF407123_1 NADH dehydrogenase subunit 6 [Amblyospiza albifrons]
          Length = 159

 Score = 34.3 bits (77), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72

Query: 76 MLDIDIEVAEPRKKR 90
          +       A+P  + 
Sbjct: 73 L------AADPYPET 81


>gi|300115151|ref|YP_003761726.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Nitrosococcus watsonii C-113]
 gi|299541088|gb|ADJ29405.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Nitrosococcus watsonii C-113]
          Length = 261

 Score = 34.3 bits (77), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 49/74 (66%)

Query: 2  VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
          V+Q + F +F+F++I  +  + T  +   S   L+ +F+  AGLF+LL A+ +A++ +++
Sbjct: 6  VLQWITFGIFAFISIAGALGMATTMSMFRSGIFLMASFIGVAGLFILLLADLLALLQIMM 65

Query: 62 YVGAVIVFFLFIIM 75
          Y+G ++V  LF+++
Sbjct: 66 YIGGMLVMILFMLL 79


>gi|295641255|gb|ADG22792.1| NADH dehydrogenase subunit 6 [Taxidea taxus]
          Length = 177

 Score = 34.3 bits (77), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 17/157 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M          
Sbjct: 25  SPIYGGLVLIVSGAIGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84

Query: 87  RKKRGFLGSFFIGILAAELIVC----ASNF---MVFSAEGELSRLVFKGNNV-----ENI 134
             K   L +F +G+L+  L VC      NF   +V    G    +++   +      E +
Sbjct: 85  SNKA-VLAAFIVGVLSELLTVCYILNEDNFEVDVVLKFNGAGDWVIYDTGDSGFFSEEAM 143

Query: 135 G-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G   LY+   + + ++G+ LL   IG +V+M   R +
Sbjct: 144 GIAALYSYGTWLVVVTGWSLL---IGVLVIMEVTRGN 177


>gi|37596479|gb|AAQ95000.1| NADH dehydrogenase subunit 6 [Vidua obtusa]
          Length = 159

 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +     
Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73

Query: 82 EVAEPRKKR 90
            A+P  + 
Sbjct: 74 -AADPYPET 81


>gi|21306228|gb|AAM45920.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306230|gb|AAM45921.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306232|gb|AAM45922.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306234|gb|AAM45923.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306236|gb|AAM45924.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306238|gb|AAM45925.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306240|gb|AAM45926.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306242|gb|AAM45927.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
          Length = 156

 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++
Sbjct: 12 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 68


>gi|148292254|dbj|BAF62958.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|148292268|dbj|BAF62971.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|150372667|dbj|BAF66130.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
          Length = 175

 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 17/156 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSRLVFKGNNV-----ENIG 135
             K    LG+F +G+L+  L+ C         +VF   G    +V+   +      E +G
Sbjct: 85  SNKAV--LGAFIVGLLSELLLACYILKDDEADVVFGFNGMGDWVVYDTGDSGFFSEEAMG 142

Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              LY+   + + ++G+ LL   +G +V+M   R +
Sbjct: 143 IAALYSYGTWLVVVTGWSLL---VGVLVIMEITRGN 175


>gi|148292240|dbj|BAF62945.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|150372639|dbj|BAF66104.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|150372653|dbj|BAF66117.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
          Length = 175

 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 17/156 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSRLVFKGNNV-----ENIG 135
             K    LG+F +G+L+  L+ C         +VF   G    +V+   +      E +G
Sbjct: 85  SNKAV--LGAFIVGLLSELLLACYILKDDEADVVFGFNGMGDWVVYDTGDSGFFSEEAMG 142

Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              LY+   + + ++G+ LL   +G +V+M   R +
Sbjct: 143 IAALYSYGTWLVVVTGWSLL---VGVLVIMEITRGN 175


>gi|19481538|gb|AAL88841.1|AF407108_1 NADH dehydrogenase subunit 6 [Vidua paradisaea]
          Length = 159

 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
          V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +     
Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73

Query: 82 EVAEPRKKR 90
            A+P  + 
Sbjct: 74 -AADPYPET 81


>gi|76009064|gb|ABA38994.1| NADH dehydrogenase subunit 6 [Geranospiza caerulescens]
          Length = 172

 Score = 34.3 bits (77), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G ++V F++ + 
Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72

Query: 76 M 76
          +
Sbjct: 73 L 73


>gi|22711916|ref|NP_683855.1| NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum]
 gi|75272576|sp|Q8M9T8|NU6C_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
          chloroplastic; AltName: Full=NAD(P)H dehydrogenase
          subunit 6; AltName: Full=NADH-plastoquinone
          oxidoreductase subunit 6
 gi|22416920|gb|AAM96520.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chaetosphaeridium
          globosum]
          Length = 179

 Score = 34.3 bits (77), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 44/70 (62%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          ++  F   + +  VV   N IYS   L   F++ A L+LLLG+EF+++  +++YVGA+ V
Sbjct: 11 FVLDFFIFVGALGVVFFNNIIYSALFLGLTFLSVALLYLLLGSEFLSVAQVIIYVGAINV 70

Query: 69 FFLFIIMMLD 78
            +F IM+++
Sbjct: 71 LIVFAIMLVN 80


>gi|159793509|ref|YP_001542779.1| NADH dehydrogenase subunit 6 [Ursus thibetanus]
 gi|121592300|gb|ABM63237.1| NADH dehydrogenase subunit 6 [Ursus thibetanus]
          Length = 175

 Score = 34.3 bits (77), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 29/162 (17%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85
           +PIY    LI       G+ L  G  F+ ++  +VY+G ++V F +   M      EV  
Sbjct: 25  SPIYGGLVLIINGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWV 84

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV-------------- 131
             K    LG+F +G+L+  LI C      +  + +   +VFK N V              
Sbjct: 85  SNKAV--LGAFIVGLLSELLIAC------YVLKDDEVEIVFKFNGVGDWVIYDTGDSGFF 136

Query: 132 --ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             E +G   LY+   + + ++G+ LL   IG +V+M   R +
Sbjct: 137 SEEAMGIAALYSYGTWLVIVTGWSLL---IGVLVIMEVTRGN 175


Searching..................................................done


Results from round 2




>gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040539|gb|ACT57335.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 199

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV
Sbjct: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE
Sbjct: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL
Sbjct: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180

Query: 181 ESNPDNSIVMVKVKSGKGI 199
           ESNPDNSIVMVKVKSGKGI
Sbjct: 181 ESNPDNSIVMVKVKSGKGI 199


>gi|327188497|gb|EGE55711.1| NADH dehydrogenase subunit J [Rhizobium etli CNPAF512]
          Length = 251

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 99/204 (48%), Positives = 135/204 (66%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 48  MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 107

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 108 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPEIA 167

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IKRQ+
Sbjct: 168 KTVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 227

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I +Q+   P  ++ +V VK G+G+
Sbjct: 228 IPRQVARTPATAVEVVSVKPGQGV 251


>gi|218462498|ref|ZP_03502589.1| NADH dehydrogenase subunit J [Rhizobium etli Kim 5]
          Length = 230

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 99/204 (48%), Positives = 135/204 (66%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 27  MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 86

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 87  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPEIA 146

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IKRQ+
Sbjct: 147 KSVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 206

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I +Q+   P  ++ +V VK G+G+
Sbjct: 207 IPRQVARTPATAVEVVTVKPGQGV 230


>gi|296116525|ref|ZP_06835135.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976737|gb|EFG83505.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 257

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 129/201 (64%), Gaps = 4/201 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+F+ + ++S+ +VV+ RNP++SV  LI AF NAAGLFL+ GAEF+AMI ++VY
Sbjct: 2   MTQIVFYIFAAVLVLSASMVVSARNPVHSVLFLILAFFNAAGLFLIAGAEFLAMILVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLDI I +  E  ++    G+    +L  EL++   ++ V S  G++
Sbjct: 62  VGAVAVLFLFVVMMLDIRIAQAREGLQRYAPFGAAIGAVLLGELVLAFMHWRVASNIGDV 121

Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           + LV      +N   IG VLYT Y +  +    +LL++MIGAIVL LR R   +RQDI +
Sbjct: 122 AHLVPSTPTRSNTAAIGDVLYTHYIFLFQACALVLLVAMIGAIVLTLRDRPTGRRQDIER 181

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q E +P  S+ M+ +  G+ +
Sbjct: 182 QHERDPAESMEMLSLPLGRSV 202


>gi|291613547|ref|YP_003523704.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sideroxydans
           lithotrophicus ES-1]
 gi|291583659|gb|ADE11317.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sideroxydans
           lithotrophicus ES-1]
          Length = 215

 Score =  194 bits (494), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 124/195 (63%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++++ FY F+ + ++++  V+T RNP+++V  L+ AFV++AG++LLL AEF+A++ ++
Sbjct: 1   MNLETVLFYFFAIVTVLAALRVITARNPLHAVLFLVLAFVSSAGIWLLLEAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+IE       R       +  L    +V        SA   
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIERLREGFWRWLPVGLLLAALIGVQMVWVLGAKETSAGMR 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           + +     +N + +G+++YT Y YP E++  +LL++M+ AI L LR RRD KRQDI++Q+
Sbjct: 121 VVKHAADYSNTKELGRLVYTDYVYPFELAAILLLVAMVAAIALTLRRRRDAKRQDINQQV 180

Query: 181 ESNPDNSIVMVKVKS 195
           +    + + +V V S
Sbjct: 181 KVKKQDRLRIVSVPS 195


>gi|312116311|ref|YP_004013907.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311221440|gb|ADP72808.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 200

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 89/199 (44%), Positives = 128/199 (64%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +   FFYLFS + I S  +V++ RNP++SV  LI AF+NAAGLF+LLGAEF+AMI ++
Sbjct: 1   MTIAGYFFYLFSIVLISSGAMVISARNPVHSVLFLILAFLNAAGLFVLLGAEFLAMILVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++M LDID         R       +G++    ++        +    
Sbjct: 61  VYVGAVAVLFLFVVMTLDIDFGQLRKGMSRYLPIGILVGLVLVTELILVVGGFTMAPGAI 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                 + +N E IG+VLYT Y Y  ++SG +LL++MIGAIVL LRHR D KRQ++++Q+
Sbjct: 121 RPVASAQVSNTEAIGRVLYTDYLYFFQLSGLVLLVAMIGAIVLTLRHRPDSKRQNVARQV 180

Query: 181 ESNPDNSIVMVKVKSGKGI 199
               +++I +VKV++GKGI
Sbjct: 181 GRKREDAIEVVKVETGKGI 199


>gi|150396122|ref|YP_001326589.1| NADH dehydrogenase subunit J [Sinorhizobium medicae WSM419]
 gi|150027637|gb|ABR59754.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           medicae WSM419]
          Length = 222

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 101/204 (49%), Positives = 136/204 (66%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP+YSV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 19  MGLQALFFYLFAFIAVASAFMVIAAKNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 78

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VF 115
           VYVGAV V FLF++MMLDID  E+     +   +G+    ILAAELIV A  +     + 
Sbjct: 79  VYVGAVAVLFLFVVMMLDIDFAELRAGVLEYAPIGALIGMILAAELIVVAGGWAFSPEIA 138

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                      +  N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR++IKRQ 
Sbjct: 139 KGIAMPIPAPSERTNTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLRHRQNIKRQS 198

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I +Q+   P+ ++ +V VK G+GI
Sbjct: 199 IPQQVARTPETAVEVVTVKPGQGI 222


>gi|114327957|ref|YP_745114.1| NADH-quinone oxidoreductase chain J [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316131|gb|ABI62191.1| NADH-quinone oxidoreductase chain J [Granulibacter bethesdensis
           CGDNIH1]
          Length = 247

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 128/200 (64%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + ++ FY+FS + I+S  +VV+ RNP+++V  LI AF NAAGLFLL GAEF+AMI ++VY
Sbjct: 2   IAAIAFYVFSAILIVSGAMVVSARNPVHAVLFLILAFFNAAGLFLLTGAEFLAMILVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MML+I+  EV +  ++   +G+   G+L  EL +    + V      L
Sbjct: 62  VGAVAVLFLFVVMMLNINFAEVRDGWQRYAPVGAAIGGVLLVELAMVLGGWQVAPGASAL 121

Query: 122 --SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             S       N   +G+++YT Y    +++G ILL++MIGAIVL LR R+  + Q+I++Q
Sbjct: 122 RFSPRPDHVQNTVALGQIVYTHYVMLFQMAGLILLVAMIGAIVLTLRDRKTSRHQNIAEQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +    ++++ +V    G+GI
Sbjct: 182 VNRRIEDTLQLVNAPVGQGI 201


>gi|163759531|ref|ZP_02166616.1| NADH dehydrogenase subunit J [Hoeflea phototrophica DFL-43]
 gi|162283128|gb|EDQ33414.1| NADH dehydrogenase subunit J [Hoeflea phototrophica DFL-43]
          Length = 204

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/204 (46%), Positives = 133/204 (65%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFY+F+F+A+ S+F+V+  RNP++SV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 1   MGLQALFFYMFAFVAVASAFMVIAARNPVHSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLDID    +            +GI+ A  ++       FS    
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTEMKSGALEYAPVGALVGIILAAELIIVLGGNAFSPSAA 120

Query: 121 LS-----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            S       + + +N + +G VLYT Y +  +I+G +L ++MIGAIVL LRHR  IKRQD
Sbjct: 121 TSGANPIPALSERSNTQALGDVLYTDYIFFFQIAGLVLFVAMIGAIVLTLRHREHIKRQD 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I++Q+   P+ ++ +VKVK G+GI
Sbjct: 181 INQQVARTPETAVEVVKVKPGQGI 204


>gi|194289168|ref|YP_002005075.1| NADH dehydrogenase subunit j [Cupriavidus taiwanensis LMG 19424]
 gi|193223003|emb|CAQ69008.1| NADH:ubiquinone oxidoreductase complex I, chain J [Cupriavidus
           taiwanensis LMG 19424]
          Length = 240

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 71/199 (35%), Positives = 122/199 (61%), Gaps = 3/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FY+F+ + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A++ ++
Sbjct: 27  MELTTTIFYVFALVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLQAEFLAILLVL 86

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MM+DIDIE            +  +G  I+A   IV   NF+  +  
Sbjct: 87  VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMASIVGALIIAEMAIVLVRNFVGTTTP 146

Query: 119 GELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
              +     G +N   +GK++YT Y Y  E++G ILL+++I A+ L LR R+D+K QD+S
Sbjct: 147 VAPAGSQEPGYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRRKDVKAQDVS 206

Query: 178 KQLESNPDNSIVMVKVKSG 196
            QL +  D  + +V + + 
Sbjct: 207 AQLRTRRDERVRLVPMAAE 225


>gi|162148802|ref|YP_001603263.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545450|ref|YP_002277679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787379|emb|CAP56974.1| putative NADH-quinone oxidoreductase chain J [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533127|gb|ACI53064.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 253

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 127/200 (63%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+F+ + ++S+ +VV+ RNP++SV  LI AF NAAGLFL+ GAEF+AMI ++VY
Sbjct: 2   MAQIVFYVFATVLVLSAGMVVSARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMILVIVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD+   E+ E  ++    G+    +L AEL +   ++ V     ++
Sbjct: 62  VGAVAVLFLFVVMMLDVRFTEMREGLQRYAPFGAAVGAVLFAELALAFGHWQVARNIADV 121

Query: 122 SRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           S LV      N   +G VLYT Y +  E  G +LL++MIGAIVL LR R   +RQ+I +Q
Sbjct: 122 SHLVPTPGRTNTAALGDVLYTHYIFLFESCGLVLLVAMIGAIVLTLRERPVGRRQNIERQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
            E    +S+ M+ +  G+G+
Sbjct: 182 HERTAADSLDMMALPLGQGV 201


>gi|114151611|ref|YP_740454.1| NADH dehydrogenase subunit 6 [Zea luxurians]
 gi|110287607|gb|ABG65653.1| NADH dehydrogenase subunit 6 [Zea luxurians]
          Length = 375

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 11/187 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM +I I        R    S  IG I   E+     N  +       +  
Sbjct: 61  IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLKYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLE 181
           D+ ++  
Sbjct: 181 DVFRRNA 187


>gi|295689615|ref|YP_003593308.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Caulobacter
           segnis ATCC 21756]
 gi|295431518|gb|ADG10690.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Caulobacter
           segnis ATCC 21756]
          Length = 205

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/203 (45%), Positives = 133/203 (65%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYL +F+ I +  LVV+ RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +V
Sbjct: 1   MALQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-- 117
           VYVGAV V FLF++MMLD+D  E+ +   +   +G    GIL  E+I  A+      A  
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELRQGFAQYLPIGGLVGGILTLEMIFVAATVATNGAAA 120

Query: 118 -EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             G  +       N E IG+VLYT Y +  +++G +LL++MIGAIVL LRH+  +KRQDI
Sbjct: 121 KNGLPNASPGGVPNTEAIGRVLYTDYIFFFQLAGLVLLVAMIGAIVLTLRHKPGVKRQDI 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            KQ+   P   + +V++K G+GI
Sbjct: 181 GKQVARTPKTGMTLVQIKPGEGI 203


>gi|90423914|ref|YP_532284.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisB18]
 gi|90105928|gb|ABD87965.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
          Length = 212

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 129/202 (63%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  LFFYL+S + + ++ +V+  RNP+++V  LI  FVNAAGLF+L+GAEF+AMI ++
Sbjct: 1   MTLPDLFFYLYSGVCVAAATMVIVSRNPVHAVLFLILVFVNAAGLFMLMGAEFLAMILII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VYVGAV V FLF+IMMLDID +               IG++    ++  +   V      
Sbjct: 61  VYVGAVAVLFLFVIMMLDIDFKQLREGFFEYLPFGLLIGVIFLAELLLLAGGWVIHPTLT 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   + +    +N E +G VLYT+Y +  +ISG ILL++MIGAIVL +RHR  +KRQ+IS
Sbjct: 121 KAITAPIPDNISNTEALGMVLYTRYIHYFQISGLILLVAMIGAIVLTMRHRVSVKRQNIS 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q   NP+ ++ + KV SG+G+
Sbjct: 181 AQNARNPETAMDVRKVASGQGL 202


>gi|258542713|ref|YP_003188146.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633791|dbj|BAH99766.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636850|dbj|BAI02819.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639903|dbj|BAI05865.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642959|dbj|BAI08914.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646014|dbj|BAI11962.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649067|dbj|BAI15008.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652054|dbj|BAI17988.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655111|dbj|BAI21038.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO
           3283-12]
          Length = 243

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 127/199 (63%), Gaps = 2/199 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L FY+F+ + + S+ +V++ RNP++SV  LI AF NAAGLFL+ GAEF+AM+ ++VY
Sbjct: 8   MAQLVFYVFATVLLFSAVMVISARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMLLVIVY 67

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLDID   + E  +K   LG    G+L AEL++  SN+ +  A    
Sbjct: 68  VGAVAVLFLFVVMMLDIDFSSLREGFQKHAPLGVCVGGVLFAELLMAFSNWKMAPANIVA 127

Query: 122 S-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
               V +  N E +G V+YT Y +  +  G +LL++MIGAIVL LR R   +RQ+I +Q 
Sbjct: 128 PLNPVPQLTNTEALGTVIYTHYVFLFQACGLVLLVAMIGAIVLTLRERATGRRQNIDQQH 187

Query: 181 ESNPDNSIVMVKVKSGKGI 199
               + ++ +V++  G+ +
Sbjct: 188 ARTVEETLELVQLPLGENV 206


>gi|329114687|ref|ZP_08243446.1| NADH-quinone oxidoreductase subunit J [Acetobacter pomorum DM001]
 gi|326696167|gb|EGE47849.1| NADH-quinone oxidoreductase subunit J [Acetobacter pomorum DM001]
          Length = 243

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 126/199 (63%), Gaps = 2/199 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L FY+F+ + + S+ +V++ RNP++SV  LI AF NAAGLFL+ GAEF+AM+ ++VY
Sbjct: 8   MAQLVFYVFATVLLFSAVMVISARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMLLVIVY 67

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLDID   + E  +K   LG    G+L AEL++  SN+ +  A    
Sbjct: 68  VGAVAVLFLFVVMMLDIDFSSLREGFQKHAPLGVCVGGVLFAELLMAFSNWKMAPANIVA 127

Query: 122 S-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                 +  N E +G V+YT Y +  +  G +LL++MIGAIVL LR R   +RQ+I KQ 
Sbjct: 128 PLNPAPQLTNTEALGTVIYTHYVFLFQACGLVLLVAMIGAIVLTLRERATGRRQNIDKQH 187

Query: 181 ESNPDNSIVMVKVKSGKGI 199
               + ++ +V++  G+ +
Sbjct: 188 ARTVEETLELVQLPLGENV 206


>gi|254294093|ref|YP_003060116.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hirschia
           baltica ATCC 49814]
 gi|254042624|gb|ACT59419.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hirschia
           baltica ATCC 49814]
          Length = 204

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 76/197 (38%), Positives = 113/197 (57%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ + FY+ S + +IS+  V+  RNP++SV  LI +F  AAGL +L+GAEF+AM+ +VVY
Sbjct: 1   MQLIAFYILSTVVLISAISVIASRNPVHSVLWLILSFFTAAGLLVLIGAEFLAMLLIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V FLF++MMLD+D           F+    + +     I   +            
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAEMRKGFADYFVVGGLVALALLAEIGVVAASANSVEGRNFD 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                  N E +  VLYT Y    +++G +LL++MIGAIVL LRHR D+KRQ + +Q   
Sbjct: 121 PSPGADTNAEALSNVLYTDYLLLFQMAGIVLLVAMIGAIVLTLRHRPDVKRQKVEEQTAR 180

Query: 183 NPDNSIVMVKVKSGKGI 199
             + ++ ++KV  G+GI
Sbjct: 181 RREEAVELIKVNPGQGI 197


>gi|254439778|ref|ZP_05053272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Octadecabacter antarcticus 307]
 gi|198255224|gb|EDY79538.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Octadecabacter antarcticus 307]
          Length = 201

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 81/201 (40%), Positives = 122/201 (60%), Gaps = 2/201 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY F+   I    + V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++
Sbjct: 1   MTPVVIAFYAFAATTIGGGLMTVLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AE 118
           VYVGAV V FLF++MMLD+D    +    R    +  IG++    +  A     +S   E
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVLLMQLAMAFGVWDYSDGFE 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             L++ +    N + +G V+Y  Y    ++SG ILL++MIGAIVL LRHR D+KRQ++  
Sbjct: 121 TRLAQPIVDVENTKQLGLVIYDDYFLIFQLSGLILLVAMIGAIVLTLRHRTDVKRQNVMV 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+  +P  ++ +  VK G+G+
Sbjct: 181 QMSRDPAKAMELKDVKPGQGL 201


>gi|15888608|ref|NP_354289.1| NADH dehydrogenase subunit J [Agrobacterium tumefaciens str. C58]
 gi|15156330|gb|AAK87074.1| NADH ubiquinone oxidoreductase chain J [Agrobacterium tumefaciens
           str. C58]
          Length = 204

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 98/204 (48%), Positives = 134/204 (65%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++FFY+F+F+A+ S+F+V+  +NP++SV  LI  F NAA LFLL GAEF+AMI LV
Sbjct: 1   MGLHAVFFYIFAFVAVASAFMVIASKNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D  E+     +   +G+    ILAAELIV     M+     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELRSGVLQYAPIGALIGVILAAELIVVVGGSMLNPIAA 120

Query: 120 E----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +          +  N   +G VLYT Y Y  +++G +LL++MIGAIVL LRHR DIKRQD
Sbjct: 121 KSITMPIPPAAERTNTAALGDVLYTNYVYFFQLAGLVLLVAMIGAIVLTLRHRTDIKRQD 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           IS Q+  +P  ++  VKVK G+GI
Sbjct: 181 ISTQVGRDPKTAVTTVKVKPGQGI 204


>gi|260462241|ref|ZP_05810485.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium
           opportunistum WSM2075]
 gi|259032101|gb|EEW33368.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium
           opportunistum WSM2075]
          Length = 206

 Score =  187 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 96/202 (47%), Positives = 136/202 (67%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++ FFYLF+F+A+ S+F+V++ RNP++SV  LI  F NAAGLF+L GAEF+AMI LVVY
Sbjct: 5   LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VFSA 117
           VGAV+V FLF++MMLD+D  E+ E   +   +G+    ILAAELIV    +     + S 
Sbjct: 65  VGAVMVLFLFVVMMLDVDFAEMKEGALQYAPIGALVGLILAAELIVVLGGYTFAPQLAST 124

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
             +    +   +N   +G +LYT Y Y  +ISG ILL++MIGAIVL LRH+  +KRQ I+
Sbjct: 125 VAKPIPDLAARSNTAALGDILYTDYLYYFQISGLILLVAMIGAIVLTLRHKEGVKRQSIA 184

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+   P   + + KVKSG+G+
Sbjct: 185 AQVGRTPATGMEIRKVKSGEGV 206


>gi|91776404|ref|YP_546160.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Methylobacillus flagellatus KT]
 gi|91710391|gb|ABE50319.1| NADH dehydrogenase subunit J [Methylobacillus flagellatus KT]
          Length = 212

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 114/201 (56%), Gaps = 2/201 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ Q   FY  + + + +   V+T RNP+++   L+ AF  AAG++LLL AEF+A+  ++
Sbjct: 1   MIFQDYVFYALAAILLFAGVRVITTRNPVHATLFLVLAFFTAAGIWLLLEAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VYVGAV+V FLF++MMLDI+++            +  +G+L A  +V       FS +  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDKMREGFWNALPVALPVGLLMAGEMVMILGSKHFSPDML 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              +      +N   IG+ LYT Y  P E++  +LL++++ AI L LR R+D K  D ++
Sbjct: 121 STPAPRPAGYSNTAEIGRQLYTDYLLPFELASVVLLVAIVAAIALTLRERKDSKFMDPAE 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q++    + + +V + + K I
Sbjct: 181 QVKVKRADRVRIVSMPAEKEI 201


>gi|126727167|ref|ZP_01743004.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2150]
 gi|126703595|gb|EBA02691.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2150]
          Length = 204

 Score =  187 bits (476), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 125/204 (61%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M      FYLF+ + + S  L V  R P++SV  LI AF ++AGLF+LLGAEF+AM+ ++
Sbjct: 1   MTFFDFTFYLFAIVTVGSGLLCVLARQPVHSVLWLICAFFSSAGLFVLLGAEFIAMLLVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLD+D    +    +    +  IG++    +         S + E
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAQLKAEMAKFMPVALLIGVVLLMELGLVFGSWTVSPDAE 120

Query: 121 -----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                ++  + + +N   +G+++YT+Y Y  + +G ILL++MIGAIVL LRHR+D+KRQ 
Sbjct: 121 GLRAAVTPALDEVHNTAALGQLIYTKYIYLFQAAGLILLVAMIGAIVLTLRHRKDVKRQV 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I  Q+  +P +++ +  VK G+G+
Sbjct: 181 IRDQILRDPKDAMEIKDVKPGQGL 204


>gi|307942128|ref|ZP_07657479.1| NADH-quinone oxidoreductase subunit j [Roseibium sp. TrichSKD4]
 gi|307774414|gb|EFO33624.1| NADH-quinone oxidoreductase subunit j [Roseibium sp. TrichSKD4]
          Length = 204

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 88/204 (43%), Positives = 138/204 (67%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + + FFYLF+ + + S+F+V+  RNP++SV  LI AFVN+AGLF+LLGAE++AM+ +V
Sbjct: 1   MFLNAFFFYLFAGVTVASAFMVIAARNPVHSVLFLILAFVNSAGLFVLLGAEYLAMLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSA-- 117
           VYVGAV V FLF++MM+D+D         +       +G +L  EL++  S +++     
Sbjct: 61  VYVGAVAVLFLFVVMMMDVDFAELRQGFLQYLPAGALVGLVLLIELLMGVSAWILAPGLI 120

Query: 118 --EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
               E +  + + +N+E IG+VLYT+Y Y  ++SG +LL++MIGAIVL LRH+   KRQD
Sbjct: 121 GQGSEPTPALNEVSNIEAIGQVLYTKYIYFFQVSGLVLLVAMIGAIVLTLRHKPYAKRQD 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I+ Q+    ++++ + KV++GKGI
Sbjct: 181 IATQVGRRREDAVEVRKVETGKGI 204


>gi|13471397|ref|NP_102963.1| NADH dehydrogenase subunit J [Mesorhizobium loti MAFF303099]
 gi|14022139|dbj|BAB48749.1| NADH-ubiquinone dehydrogenase chain 10 [Mesorhizobium loti
           MAFF303099]
          Length = 206

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 136/202 (67%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++ FFYLF+F+A+ S+F+V++ RNP++SV  LI  F NAAGLF+L GAEF+AMI LVVY
Sbjct: 5   LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VFSA 117
           VGAV+V FLF++MMLD+D  E+ E   +   +G+    ILAAELI+    +     + + 
Sbjct: 65  VGAVMVLFLFVVMMLDVDFAEMKEGALQYAPIGALVGLILAAELIIVLGGYTFAPKLAAT 124

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
             +    +   +N   +G +LYT Y Y  +ISG ILL++MIGAIVL LRH+  +KRQ I+
Sbjct: 125 VSKPIPDLATRSNTAALGDILYTDYLYYFQISGLILLVAMIGAIVLTLRHKEGVKRQSIA 184

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+   P   + + KVKSG+G+
Sbjct: 185 AQVGRTPATGMEIRKVKSGEGV 206


>gi|325524299|gb|EGD02411.1| NADH:ubiquinone oxidoreductase subunit J [Burkholderia sp. TJI49]
          Length = 216

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 122/200 (61%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G   ++   LI+        +A
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDFLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHAA 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +  +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KRQ +S
Sbjct: 121 HAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   D+ + +VK+++ K
Sbjct: 181 DQVKVRRDDRVRLVKMEAEK 200


>gi|299135023|ref|ZP_07028214.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Afipia sp.
           1NLS2]
 gi|298590000|gb|EFI50204.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Afipia sp.
           1NLS2]
          Length = 212

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +VVT RNP++SV  LI  FVNAAGLF+LL AEF+AMI +V
Sbjct: 1   MILPALFFYLFAGVCVASAVMVVTARNPVHSVLFLILTFVNAAGLFVLLNAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--A 117
           VYVGAV V FLF+IMMLD+D  E+ +   +   +G     I  AEL++ A  +++    A
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFAELRQGFIEYLPVGLLIGAIFLAELLLVAGGWVLSPNVA 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               + +     N E IG VLYT+Y +  +++G +LL++MIGAIVL LRH+  +KRQ+IS
Sbjct: 121 HSITAPIPATVTNTEAIGLVLYTRYIHYFQLAGLVLLVAMIGAIVLTLRHKPSVKRQNIS 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q       ++ + +V SG+G+
Sbjct: 181 AQNARGKATAMAVRQVPSGQGL 202


>gi|255263382|ref|ZP_05342724.1| NADH-quinone oxidoreductase subunit j [Thalassiobium sp. R2A62]
 gi|255105717|gb|EET48391.1| NADH-quinone oxidoreductase subunit j [Thalassiobium sp. R2A62]
          Length = 201

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 2/201 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY F+   I      V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++
Sbjct: 1   MTPVVIAFYAFAVSTIAGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLD+D    +    +       IG++    +  A     +S   +
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMSKYLPLGLLIGVIVLMQLSLAFGVWDYSEGYQ 120

Query: 121 LSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                 +G+  N E +G +LY +Y    +++G ILL++MIGAIVL LRHR D+KRQ+I  
Sbjct: 121 TRLAAPEGDAMNTEALGLLLYDKYILLFQLAGLILLVAMIGAIVLTLRHREDVKRQNIVS 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+  +P   + +  VK G+G+
Sbjct: 181 QILRDPAKQMKLKDVKPGQGL 201


>gi|222085586|ref|YP_002544116.1| NADH-ubiquinone oxidoreductase chain J protein [Agrobacterium
           radiobacter K84]
 gi|221723034|gb|ACM26190.1| NADH-ubiquinone oxidoreductase chain J protein [Agrobacterium
           radiobacter K84]
          Length = 204

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 102/204 (50%), Positives = 137/204 (67%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFY+F+F+A+ S+F+V++ RNP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 1   MGLQALFFYIFAFVAVASAFMVISARNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G+    ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFSELRAGILEYAPIGALIGIILAAELIVVVGGSVISPEIA 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
               +         N   +G VLYT Y Y  EI+G +LL++MIGAIVL LRHR  IKRQ+
Sbjct: 121 RSVAMPIPALTERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTHIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           IS+Q+   P  ++ +VKVK G+G+
Sbjct: 181 ISQQVARTPATAVEVVKVKPGQGV 204


>gi|325292643|ref|YP_004278507.1| NADH dehydrogenase I chain J [Agrobacterium sp. H13-3]
 gi|325060496|gb|ADY64187.1| NADH dehydrogenase I chain J [Agrobacterium sp. H13-3]
          Length = 204

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 96/204 (47%), Positives = 134/204 (65%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++FFY+F+F+A+ S+F+V+  +NP++SV  LI  F NAA LFLL GAEF+AMI LV
Sbjct: 1   MGLHAVFFYIFAFVAVASAFMVIASKNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D  E+     +   +G+    ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELRSGVLQYAPIGALIGIILAAELIVVVGGSVLNPQAA 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y Y  +++G +LL++MIGAIVL LRHR DIKRQ+
Sbjct: 121 KSITMPIPSPAVRTNTAALGDVLYTNYVYFFQLAGLVLLVAMIGAIVLTLRHRTDIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           IS Q+  +P  ++  VKVK G+GI
Sbjct: 181 ISTQVGRDPKTAVTTVKVKPGQGI 204


>gi|115352329|ref|YP_774168.1| NADH dehydrogenase subunit J [Burkholderia ambifaria AMMD]
 gi|170698118|ref|ZP_02889198.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           ambifaria IOP40-10]
 gi|171316312|ref|ZP_02905533.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           ambifaria MEX-5]
 gi|115282317|gb|ABI87834.1| NADH dehydrogenase subunit J [Burkholderia ambifaria AMMD]
 gi|170136976|gb|EDT05224.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           ambifaria IOP40-10]
 gi|171098538|gb|EDT43339.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           ambifaria MEX-5]
          Length = 216

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 120/200 (60%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G +      LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVVETALILWRGYGDTHTV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +  +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KRQ +S
Sbjct: 121 HAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   ++ + +VK+++ K
Sbjct: 181 DQVKVRRNDRVRLVKMEAEK 200


>gi|89053681|ref|YP_509132.1| NADH dehydrogenase subunit J [Jannaschia sp. CCS1]
 gi|88863230|gb|ABD54107.1| NADH dehydrogenase subunit J [Jannaschia sp. CCS1]
          Length = 205

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 120/205 (58%), Gaps = 6/205 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    FYLF+   +      VT +NP++SV  LI AF+++AGLF+LLGAEFVAM+ ++
Sbjct: 1   MTIVDFTFYLFALSVVAGGLFTVTSKNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLMII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MV 114
           VYVGAV V FLF++MMLD+D    +    +       IG++    +  A         + 
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMAKYVPLGGLIGVILLMQLTLAFGVWEAADGVD 120

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            SA    +      +N + +G ++Y  Y    ++SG ILL++M+GAIVL LRHR D+KRQ
Sbjct: 121 ISATPIGTPEGAGDHNTQALGLIVYDDYFLAFQLSGLILLVAMVGAIVLTLRHRVDVKRQ 180

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           D+  Q+  +P  ++ +  VK G+G+
Sbjct: 181 DVVAQMMRDPAKAMELKDVKPGQGL 205


>gi|218679751|ref|ZP_03527648.1| NADH dehydrogenase subunit J [Rhizobium etli CIAT 894]
          Length = 206

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 100/204 (49%), Positives = 134/204 (65%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+AI S+F+V+  +NP++SV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 3   MGLQALFFYLFAFVAIASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLAGAEFLAMILLV 62

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 63  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPEIA 122

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y Y  EI+G +LL++MIGAIVL LRHR +IKRQ+
Sbjct: 123 KSVAMPIPALTERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTNIKRQN 182

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I +Q+   P  ++ +V VK G+G+
Sbjct: 183 IPRQVARTPATAVEVVSVKPGQGV 206


>gi|146341104|ref|YP_001206152.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. ORS278]
 gi|146193910|emb|CAL77927.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           (NDH-1, chain J) [Bradyrhizobium sp. ORS278]
          Length = 212

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 137/202 (67%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +V+  +NP++SV  LI AFVNA+GLF+L+GAEF+AMI +V
Sbjct: 1   MILPALFFYLFAAVCVASAVMVIVSKNPVHSVLYLILAFVNASGLFVLMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SA 117
           VYVGAV V FLF+IMMLD+D  E+ E   +   +G    GI   EL++  S +++   + 
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFTELREGFLQYMPIGLVIGGIFLFELLLTVSYWVINPSTP 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   + +     N E +G VLYT+Y +  ++SG ILL++MIGAIVL LRH+  +KRQDI+
Sbjct: 121 KAITAAIPTNVTNTEALGLVLYTKYVHYFQLSGMILLVAMIGAIVLTLRHKASVKRQDIN 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q    PD ++ + KV  G+G+
Sbjct: 181 VQNARTPDMAMAVRKVAVGQGL 202


>gi|209548873|ref|YP_002280790.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534629|gb|ACI54564.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 204

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 100/204 (49%), Positives = 135/204 (66%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPEIA 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y Y  EI+G +LL++MIGAIVL LRHR +IKRQ+
Sbjct: 121 KSVAMPIPALSERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTNIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I +Q+   P  ++ +V VK G+G+
Sbjct: 181 IPRQVARTPATAVEVVSVKPGQGV 204


>gi|222148284|ref|YP_002549241.1| NADH dehydrogenase subunit J [Agrobacterium vitis S4]
 gi|221735272|gb|ACM36235.1| NADH ubiquinone oxidoreductase chain J [Agrobacterium vitis S4]
          Length = 204

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 101/204 (49%), Positives = 137/204 (67%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++FFYLF+F+A+ S+F+V++ RNP++SV  LI  FVNAAGLF+L GAEF+AMI LV
Sbjct: 1   MGLQAIFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFVNAAGLFMLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     K G L +    I+AAELI       +  A  
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGASKYGPLAALIGAIVAAELIFVIGGSAISPAAK 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y +  +I+G +LL++MIGAIVL LRHR+ IKRQ+
Sbjct: 121 QAITMPIPALADRQNTAALGDVLYTNYVFFFQIAGLVLLVAMIGAIVLTLRHRQHIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I+ Q+   P  +I +VKVK G+GI
Sbjct: 181 IAHQVARGPATAIKVVKVKPGQGI 204


>gi|107023179|ref|YP_621506.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia AU 1054]
 gi|116690261|ref|YP_835884.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia HI2424]
 gi|170733600|ref|YP_001765547.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia MC0-3]
 gi|105893368|gb|ABF76533.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia AU 1054]
 gi|116648350|gb|ABK08991.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia HI2424]
 gi|169816842|gb|ACA91425.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           cenocepacia MC0-3]
          Length = 216

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G   ++   LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHTV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +  +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KRQ +S
Sbjct: 121 HAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   ++ + +VK+++ K
Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200


>gi|221199665|ref|ZP_03572709.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2M]
 gi|221205435|ref|ZP_03578450.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2]
 gi|221174273|gb|EEE06705.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2]
 gi|221180950|gb|EEE13353.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2M]
          Length = 216

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G   ++   LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDFLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHAV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               S      +N   IGKV+YT Y +  EI+G +LL+++I AI L     +D KRQ +S
Sbjct: 121 HAMTSGATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTSHKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   D+ + +VK+++ K
Sbjct: 181 DQVKVRRDDRVRLVKMEADK 200


>gi|172061200|ref|YP_001808852.1| NADH dehydrogenase subunit J [Burkholderia ambifaria MC40-6]
 gi|171993717|gb|ACB64636.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           ambifaria MC40-6]
          Length = 216

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 120/200 (60%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G +      LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVVETALILWRGYGDTHAV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +  +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KRQ +S
Sbjct: 121 HAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   ++ + +VK+++ K
Sbjct: 181 DQVKVRRNDRVRLVKMEAEK 200


>gi|254450873|ref|ZP_05064310.1| NADH dehydrogenase i, j subunit [Octadecabacter antarcticus 238]
 gi|198265279|gb|EDY89549.1| NADH dehydrogenase i, j subunit [Octadecabacter antarcticus 238]
          Length = 197

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/196 (41%), Positives = 119/196 (60%), Gaps = 2/196 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY F+   I    + V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGA
Sbjct: 2   IAFYAFAVTTIGGGLMTVLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGELSR 123
           V V FLF++MMLD+D    +    R    +  IG++    +  A     +S   E  L +
Sbjct: 62  VAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVLLMQLALAFGVWDYSDGFETRLVQ 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
            +    N + +G VLY  Y    ++SG ILL++MIGAIVL LRHR D+KRQ++  Q+  +
Sbjct: 122 PIMDVENTKQLGLVLYDDYFLIFQLSGLILLVAMIGAIVLTLRHRTDVKRQNVMVQMSRD 181

Query: 184 PDNSIVMVKVKSGKGI 199
           P   + +  VK G+G+
Sbjct: 182 PAKQMELKDVKPGQGL 197


>gi|99080597|ref|YP_612751.1| NADH dehydrogenase subunit J [Ruegeria sp. TM1040]
 gi|99036877|gb|ABF63489.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
          Length = 200

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---AEG 119
           VGAV V FLF++MMLD+D    +    R    +  IG++     V A      +   AE 
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYTPLALLIGLVILMQFVIAYGSWESAHSVAEN 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               +    +N E +G +LY QY    +++G ILL++MIGAIVL LRHR+D+KRQD+  Q
Sbjct: 121 LSQPIPTDRHNTEALGLILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDVLAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  +K G+G+
Sbjct: 181 MYRDPAKAMELKDIKPGQGL 200


>gi|27380019|ref|NP_771548.1| NADH dehydrogenase subunit J [Bradyrhizobium japonicum USDA 110]
 gi|27353173|dbj|BAC50173.1| NADH ubiquinone oxidoreductase chain J [Bradyrhizobium japonicum
           USDA 110]
          Length = 212

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 89/202 (44%), Positives = 136/202 (67%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +V+  RNP++SV  LI AFVNA+GLF+L+GAEF+ M+ +V
Sbjct: 1   MILPALFFYLFAGVCVASAVMVIVSRNPVHSVLYLILAFVNASGLFVLMGAEFLGMMLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-- 117
           VYVGAV V FLF+IMMLD+D +E+ E   +   +G    GI   EL++    +++     
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFLELREGFIEYLPVGLVIGGIFLFELLLTVGFWVINPGVS 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   + +    +N E +G VLYT+Y Y  +++G +LL++MIGAIVL LRH+  +KRQDI+
Sbjct: 121 KTITAAIPTNVSNTEALGLVLYTKYVYYFQLAGMVLLVAMIGAIVLTLRHKVSVKRQDIN 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q    PD ++ M KV  G+G+
Sbjct: 181 VQNARTPDMAMAMRKVAPGQGL 202


>gi|254247666|ref|ZP_04940987.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Burkholderia
           cenocepacia PC184]
 gi|124872442|gb|EAY64158.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Burkholderia
           cenocepacia PC184]
          Length = 216

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVPFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G   ++   LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHTV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +  +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KRQ +S
Sbjct: 121 HAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   ++ + +VK+++ K
Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200


>gi|206560694|ref|YP_002231459.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia J2315]
 gi|198036736|emb|CAR52636.1| NADH dehydrogenase I chain J [Burkholderia cenocepacia J2315]
          Length = 216

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G   ++   LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHTV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +  +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KRQ +S
Sbjct: 121 HAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   ++ + +VK+++ K
Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200


>gi|73540673|ref|YP_295193.1| NADH dehydrogenase subunit J [Ralstonia eutropha JMP134]
 gi|72118086|gb|AAZ60349.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
          Length = 240

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 72/199 (36%), Positives = 120/199 (60%), Gaps = 3/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FY+F+ + ++S+  V+T +NP++S   L+ +F  AA ++LLL AEF+A++ ++
Sbjct: 27  MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLSFFTAAAIWLLLKAEFLAILLVL 86

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MM+DIDIE            +  +G  I+A   IV   NF+  +A 
Sbjct: 87  VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPLASVVGALIIAEMAIVLVRNFIGTTAP 146

Query: 119 -GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
                      +N   +GK++Y  Y Y  E++G ILL+++I A+ L LR R+D+K QDI 
Sbjct: 147 VLPAGSQDPGYSNTAALGKLIYNDYIYAFEVAGIILLVAIIAAVALTLRRRKDVKGQDIP 206

Query: 178 KQLESNPDNSIVMVKVKSG 196
            QL +  D+ + +V + + 
Sbjct: 207 SQLRTRRDDRVRLVAMPAE 225


>gi|167646785|ref|YP_001684448.1| NADH dehydrogenase subunit J [Caulobacter sp. K31]
 gi|167349215|gb|ABZ71950.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Caulobacter
           sp. K31]
          Length = 203

 Score =  184 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 89/201 (44%), Positives = 129/201 (64%), Gaps = 4/201 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ++ FYL +   +++  LVV+ RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +VVY
Sbjct: 1   MQAIAFYLLAVATVVAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLIVVY 60

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-- 119
           VGAV V FLF++MMLD+D  E+ +   +   +G    G L  E+I  A+        G  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFTELRQGFAQYLPIGGLVAGFLTLEMIFIAATVATNGKAGLN 120

Query: 120 -ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              +       N E IG+VLYT Y +  +++G +LL++MIGAIVL LRH+  +KRQDI K
Sbjct: 121 ALPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKAGVKRQDIGK 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+   P   + +V++K G+GI
Sbjct: 181 QIARTPKTGMEIVQIKPGEGI 201


>gi|78067037|ref|YP_369806.1| NADH dehydrogenase subunit J [Burkholderia sp. 383]
 gi|77967782|gb|ABB09162.1| NADH dehydrogenase subunit J [Burkholderia sp. 383]
          Length = 216

 Score =  184 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G   ++   LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTQTV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +  +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  R  +D KRQ +S
Sbjct: 121 HAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   ++ + +VK+++ K
Sbjct: 181 DQVKVRRNDRVRLVKMEAEK 200


>gi|209885061|ref|YP_002288918.1| j subunit of NADH dehydrogenase i [Oligotropha carboxidovorans OM5]
 gi|209873257|gb|ACI93053.1| j subunit of NADH dehydrogenase i [Oligotropha carboxidovorans OM5]
          Length = 212

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 125/202 (61%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +VVT RNP++SV  LI  FVNAAGLF+LL AEF+AMI +V
Sbjct: 1   MILPALFFYLFAGVCVASAVMVVTARNPVHSVLFLILTFVNAAGLFVLLNAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VYVGAV V FLF+IMMLD+D                 +G +    ++      V S +  
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFAALRQGFIEYLPVGLLVGAIFLVELLLVVGGWVLSPDVA 120

Query: 119 -GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               + +     N E IG VLYT+Y +  +++G +LL++MIGAIVL LRH+ ++KRQ+IS
Sbjct: 121 HSITAPIPTTVTNTEAIGLVLYTRYIHYFQLAGLVLLVAMIGAIVLTLRHKPNVKRQNIS 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q       +I M KV  G+G+
Sbjct: 181 VQNARGKATAIAMRKVAPGQGL 202


>gi|114771828|ref|ZP_01449221.1| NADH dehydrogenase subunit J [alpha proteobacterium HTCC2255]
 gi|114547644|gb|EAU50535.1| NADH dehydrogenase subunit J [alpha proteobacterium HTCC2255]
          Length = 204

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 87/204 (42%), Positives = 132/204 (64%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    FYLFS  A++S+  VV  RNP++SV  LI  F +AA +F+L+GAEFVAM+  +
Sbjct: 1   MTITLFAFYLFSITAVMSALFVVVARNPVHSVLWLILTFFSAASMFVLMGAEFVAMLLAI 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D +E+    +K   +GS    +L  EL +  S++ V    G
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVELKSGMQKYFLIGSSIGLVLLMELGLVISHWKVAPEAG 120

Query: 120 EL----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            L    +  +   +N   +G++LY+ Y Y  +I+G ILL +MIGAIVL LRHR D+KRQ 
Sbjct: 121 SLLQSPTPPIDTTHNTLALGQILYSDYIYLFQIAGLILLTAMIGAIVLTLRHRTDVKRQS 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q++ +P +++ ++ VK G+G+
Sbjct: 181 VVDQMQRDPADAMEVITVKPGQGL 204


>gi|86357248|ref|YP_469140.1| NADH dehydrogenase subunit J [Rhizobium etli CFN 42]
 gi|86281350|gb|ABC90413.1| NADH-ubiquinone oxidoreductase chain J protein [Rhizobium etli CFN
           42]
          Length = 204

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 100/204 (49%), Positives = 136/204 (66%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPDIA 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IKRQ+
Sbjct: 121 KSVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           IS+Q+   P  ++ +V VK G+G+
Sbjct: 181 ISRQVARTPATAVEVVSVKPGQGV 204


>gi|254251870|ref|ZP_04945188.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia
           dolosa AUO158]
 gi|124894479|gb|EAY68359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia
           dolosa AUO158]
          Length = 216

 Score =  184 bits (468), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G   ++   LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHTV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               S      +N   IGKV+YT Y +  EI+G +LL+++I AI L  +  +D KRQ +S
Sbjct: 121 HAMTSAATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTAQKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
           +Q++   ++ + +VK+++ K
Sbjct: 181 EQVKVRRNDRVRLVKMEADK 200


>gi|116251476|ref|YP_767314.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256124|emb|CAK07205.1| putative NADH-quinone oxidoreductase subunit 10 [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 204

 Score =  184 bits (468), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 99/204 (48%), Positives = 135/204 (66%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGVILAAELIVVIGGSVISPEIA 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IKRQ+
Sbjct: 121 KTVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I +Q+   P  ++ +V VK G+G+
Sbjct: 181 IPRQVARTPATAVEVVSVKPGQGV 204


>gi|319782991|ref|YP_004142467.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317168879|gb|ADV12417.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 206

 Score =  184 bits (468), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 93/202 (46%), Positives = 134/202 (66%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++ FFYLF+F+A+ S+F+V++ RNP++SV  LI  F NAAGLF+L GAEF+AMI LVVY
Sbjct: 5   LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VFSA 117
           VGAV+V FLF++MMLD+D  E+     +   +G+    ILAAELIV    +     + S 
Sbjct: 65  VGAVMVLFLFVVMMLDVDFAELKSGALQYAPIGALVGLILAAELIVVLGGYTFAPQLAST 124

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
             +    +    N   +G +LYT Y Y  +ISG +LL++MIGAIVL LRH+  +KRQ I+
Sbjct: 125 VSKPIPDLATRTNTAALGDILYTDYLYYFQISGLVLLVAMIGAIVLTLRHKPGVKRQSIA 184

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+   P   + + KVK+G+G+
Sbjct: 185 AQVGRTPATGMEIRKVKTGEGL 206


>gi|161524213|ref|YP_001579225.1| NADH dehydrogenase subunit J [Burkholderia multivorans ATCC 17616]
 gi|189351030|ref|YP_001946658.1| NADH dehydrogenase subunit J [Burkholderia multivorans ATCC 17616]
 gi|221211744|ref|ZP_03584723.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD1]
 gi|160341642|gb|ABX14728.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           multivorans ATCC 17616]
 gi|189335052|dbj|BAG44122.1| NADH dehydrogenase I chain J [Burkholderia multivorans ATCC 17616]
 gi|221169105|gb|EEE01573.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD1]
          Length = 216

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      KR    +  +G   ++   LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDFLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHAV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               S      +N   IGKV+YT Y +  EI+G +LL+++I AI L     +D KRQ +S
Sbjct: 121 HAMTSGATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTSHKGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   ++ + +VK+++ K
Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200


>gi|115524539|ref|YP_781450.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisA53]
 gi|115518486|gb|ABJ06470.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53]
          Length = 212

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  LFFYL+S   + S+ +V+  RNP+++V  LI  F N+AGLF+LLGAEF+AMI ++
Sbjct: 1   MTLPDLFFYLYSAGCVASAVMVIVSRNPVHAVLFLILVFANSAGLFVLLGAEFLAMILVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VYVGAV V FLF+IMMLDID +               +G +    ++  +          
Sbjct: 61  VYVGAVAVLFLFVIMMLDIDFKQLREGFLSHLPVGLLVGAVFLAELLLLAAGWAIRPTVT 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   S +     N E +G VLYT Y +  +I+G +LL+SMIGAIVL +RHR  +KRQDI+
Sbjct: 121 KAITSPIPSGVGNTEALGLVLYTTYIHYFQIAGMVLLVSMIGAIVLTMRHRSSVKRQDIA 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q   +P+ ++ + KV SG+G+
Sbjct: 181 AQNARSPETAMAVRKVASGQGL 202


>gi|163746213|ref|ZP_02153572.1| NADH dehydrogenase subunit J [Oceanibulbus indolifex HEL-45]
 gi|161380958|gb|EDQ05368.1| NADH dehydrogenase subunit J [Oceanibulbus indolifex HEL-45]
          Length = 200

 Score =  184 bits (467), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+   I      V  RNP++SV  LI +F++AAGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MTVFSFYLFAISVITGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLD+D    +    R    +  I ++     V A      SA  E  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIALVILMQFVMAFGAWEQSAAAEGL 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            L+ +     N E +G +LY +Y    +++G ILL++MIGAIVL LRHR+D+KRQD+  Q
Sbjct: 121 RLNTIDPDRFNTEALGLLLYDRYFLLFQLAGLILLVAMIGAIVLTLRHRKDVKRQDVVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VKSG+G+
Sbjct: 181 MMRDPAKAMELRDVKSGQGL 200


>gi|241204097|ref|YP_002975193.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857987|gb|ACS55654.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 204

 Score =  183 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 99/204 (48%), Positives = 135/204 (66%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  +NP++SV  LI  F NAAGLFLLLGAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGVILAAELIVVIGGSVISPEIA 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IKRQ+
Sbjct: 121 KSVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I +Q+   P  ++ +V VK G+G+
Sbjct: 181 IPRQVARTPATAVKVVSVKPGQGV 204


>gi|254509596|ref|ZP_05121663.1| NADH dehydrogenase i, j subunit [Rhodobacteraceae bacterium KLH11]
 gi|221533307|gb|EEE36295.1| NADH dehydrogenase i, j subunit [Rhodobacteraceae bacterium KLH11]
          Length = 200

 Score =  183 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+  AI      V  R P++SV  LI +F+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MTVFAFYLFAISAITGGLFTVISRQPVHSVLWLILSFLSSAGLFVLLGAEFVAMLLIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF---SAEG 119
           VGAV V FLF++MMLD+D    +    R    +  IG++     V A         +A  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGAWDSAQGAAAN 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               +    +N E +G +LY QY    +++G ILL++MIGAIVL LRHR+DIKRQDI  Q
Sbjct: 121 LAQPVPTDRHNTEALGVILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDIKRQDIIGQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200


>gi|149914593|ref|ZP_01903123.1| NADH dehydrogenase subunit J [Roseobacter sp. AzwK-3b]
 gi|149811386|gb|EDM71221.1| NADH dehydrogenase subunit J [Roseobacter sp. AzwK-3b]
          Length = 202

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/202 (42%), Positives = 120/202 (59%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  + FYLF+  A+      V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++
Sbjct: 1   MSMTVMSFYLFAISALAGGLFTVISRNPVHSVLWLILAFISSAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLD+D    +    R    +  IG++       A      S   E
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAALKAEMARYMPLALLIGVILLMQFGLAFGNWQMSEGAE 120

Query: 121 LSRLVFKGN---NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            +R     +   N   +G +LY +Y    + SG ILL++MIGAIVL LRHR DIKRQD+ 
Sbjct: 121 AARAAVTPDGVENTAALGMLLYDKYFLLFQTSGLILLVAMIGAIVLTLRHRSDIKRQDVL 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ +  VK G+G+
Sbjct: 181 AQMYRDPAKAMELKDVKPGQGL 202


>gi|134296424|ref|YP_001120159.1| NADH dehydrogenase subunit J [Burkholderia vietnamiensis G4]
 gi|134139581|gb|ABO55324.1| NADH dehydrogenase subunit J [Burkholderia vietnamiensis G4]
          Length = 216

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSA 117
           VYVGAV+V FLF++MMLDI+I+      K+    +  +G +      LI+        + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDFLRRDFKKFVPMATVVGAIIVVETALILWRGYGDTHTV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +  +   +N   IGKV+YT Y +  EI+G +LL+++I AI L  RH +D KRQ +S
Sbjct: 121 HAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTARHGKDSKRQRVS 180

Query: 178 KQLESNPDNSIVMVKVKSGK 197
            Q++   ++ + +VK+++ K
Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200


>gi|254476174|ref|ZP_05089560.1| NADH dehydrogenase i, j subunit [Ruegeria sp. R11]
 gi|214030417|gb|EEB71252.1| NADH dehydrogenase i, j subunit [Ruegeria sp. R11]
          Length = 200

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MTVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLD+D    +    R    +  IG++     V A      +      
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGAWESAPAAGSQ 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               +    +N E +G +LY QY    ++SG ILL++MIGAIVL LRHR+D+KRQD+  Q
Sbjct: 121 LAQPIPADKHNTEALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200


>gi|254466369|ref|ZP_05079780.1| NADH dehydrogenase i, j subunit [Rhodobacterales bacterium Y4I]
 gi|206687277|gb|EDZ47759.1| NADH dehydrogenase i, j subunit [Rhodobacterales bacterium Y4I]
          Length = 200

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+   I      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MSVFAFYLFAISTITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLD+D    +    R    +  IG++     V A      + +    
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGVWETAHQAPEL 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             + +    +N E +G ++Y QY    +++G ILL++MIGAIVL LRHR D+KRQD+  Q
Sbjct: 121 LANPVPADRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRTDVKRQDVVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPAKAMELRDVKPGQGL 200


>gi|253998392|ref|YP_003050455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus
           sp. SIP3-4]
 gi|313200469|ref|YP_004039127.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus
           sp. MP688]
 gi|253985071|gb|ACT49928.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus
           sp. SIP3-4]
 gi|312439785|gb|ADQ83891.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus
           sp. MP688]
          Length = 213

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/197 (32%), Positives = 109/197 (55%), Gaps = 2/197 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M      FY+ + + + +   V+T RNP+++   L+ AF  AAG++LLL AEF+A+  ++
Sbjct: 1   MNFNDYVFYVLAAILLFAGLRVITSRNPVHAALHLVLAFFTAAGIWLLLEAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VYVGAV+V FLF++MMLDI+++            +  +GIL    +V       F  +  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDKLREGFWEALPIALPVGILMTLEMVMILGSKHFGVDRV 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              +      +N   +G+ LYT Y  P E++  +LL++++ AI L LR R+D K  D ++
Sbjct: 121 AAPTPHPAGYSNTAELGRQLYTDYLLPFELASVVLLVAIVAAIALTLRDRKDSKFIDPAE 180

Query: 179 QLESNPDNSIVMVKVKS 195
           Q++    + I MV + +
Sbjct: 181 QVKVKRADRIRMVSMPA 197


>gi|56697605|ref|YP_167974.1| NADH dehydrogenase subunit J [Ruegeria pomeroyi DSS-3]
 gi|56679342|gb|AAV96008.1| NADH dehydrogenase I, J subunit [Ruegeria pomeroyi DSS-3]
          Length = 200

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLD+D    +    R    +  IG++     V A      +      
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAYGAWETAEGAAGH 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               +    +N E +G ++Y QY    +++G ILL++MIGAIVL LRHR+D+KRQDI  Q
Sbjct: 121 LAQPMPADRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDIVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200


>gi|254459906|ref|ZP_05073322.1| NADH-quinone oxidoreductase chain j [Rhodobacterales bacterium
           HTCC2083]
 gi|206676495|gb|EDZ40982.1| NADH-quinone oxidoreductase chain j [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 202

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/202 (40%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    FYLF+          V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++
Sbjct: 1   MSVAVFTFYLFAICTFTGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLDID    +    +    +  IG++       A      S +  
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFAELKAEMVKYMPLALLIGLVLLMQFTMAFGVWEASDQAA 120

Query: 121 ---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +      +N E +G +LY +Y    ++SG ILL++MIGAIVL LRHR D+KRQD+ 
Sbjct: 121 GLRGAVTPTDAHNTEALGLLLYDKYFLIFQLSGMILLVAMIGAIVLTLRHRTDVKRQDVM 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ +  VK G+G+
Sbjct: 181 AQMHRDPAKAMELKDVKPGQGL 202


>gi|190891296|ref|YP_001977838.1| NADH-ubiquinone oxidoreductase, chain J [Rhizobium etli CIAT 652]
 gi|190696575|gb|ACE90660.1| NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli
           CIAT 652]
          Length = 204

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 99/204 (48%), Positives = 134/204 (65%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+AI S+F+V+  +NP++SV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFVAIASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLAGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID  E+     +   +G     ILAAELIV     ++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPEIA 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +         N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IKRQ+
Sbjct: 121 KTVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I +Q+   P  ++ +V VK G+G+
Sbjct: 181 IPRQVARTPATAVEVVSVKPGQGV 204


>gi|113867079|ref|YP_725568.1| NADH dehydrogenase subunit J [Ralstonia eutropha H16]
 gi|113525855|emb|CAJ92200.1| NADH dehydrogenase chain J [Ralstonia eutropha H16]
          Length = 214

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 123/199 (61%), Gaps = 3/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FY+F+ + ++S+  V+T +NP++S   L+ +F  AA +++LL AEF+A++ ++
Sbjct: 1   MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLSFFTAAAIWMLLKAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MM+DIDIE            +  +G  I+A   IV   NF+  +  
Sbjct: 61  VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMASVVGALIIAEMAIVLVRNFIGTTTP 120

Query: 119 GELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
              +     G +N   +GK++YT Y Y  E++G ILL+++I A+ L LR R+D+K QD+S
Sbjct: 121 VATNGSQDPGYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRRKDVKAQDVS 180

Query: 178 KQLESNPDNSIVMVKVKSG 196
            QL +  D  + +V ++S 
Sbjct: 181 AQLRTRRDERVRLVPMQSE 199


>gi|75676069|ref|YP_318490.1| NADH dehydrogenase subunit J [Nitrobacter winogradskyi Nb-255]
 gi|74420939|gb|ABA05138.1| NADH dehydrogenase subunit J [Nitrobacter winogradskyi Nb-255]
          Length = 212

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/202 (42%), Positives = 128/202 (63%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +V++ RNP++SV  LI AFVNAAGLF+L+GAEF+AMI +V
Sbjct: 1   MILPALFFYLFAGVCVASAAMVISSRNPVHSVLFLILAFVNAAGLFILMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSA 117
           VYVGAV V FLF+IMMLD+D                 I  +      L+V          
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFAELREGFLEYLPFGLVIAAIFLLELLLVVGGWTLNPAVT 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   + +    +N E +G VLYT+Y +  +++G +LL++MIGAIVL LRHR  +KRQDI+
Sbjct: 121 KSITAAIPGDVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHRAGVKRQDIN 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q    P+ ++ + +V SG+G+
Sbjct: 181 VQNARTPEMAMSVRQVASGQGL 202


>gi|110680453|ref|YP_683460.1| NADH dehydrogenase subunit J [Roseobacter denitrificans OCh 114]
 gi|109456569|gb|ABG32774.1| NADH-quinone oxidoreductase chain J [Roseobacter denitrificans OCh
           114]
          Length = 200

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+   I      V  RNP++SV  LI AF++AAGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MTVFAFYLFAISVIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVLLGAEFVAMLLIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLD+D    +    +    +  IG++       A      +A  E  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMSKYLPLALLIGVVLLMQFAIAFGAWESNAAAEGM 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                    +N E +G +LY QY    ++SG ILL++MIGAIVL LRHR D+KRQD+  Q
Sbjct: 121 RAQVTPVDRHNTEALGMILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRSDVKRQDVVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VKSG+G+
Sbjct: 181 MMRDPAKAMELKDVKSGQGL 200


>gi|146278032|ref|YP_001168191.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides ATCC 17025]
 gi|145556273|gb|ABP70886.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 204

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 123/204 (60%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  L FY F+  A+ ++ +VVT RN +++V  LI  F+++AG+F+LLGAEFVAM+ ++
Sbjct: 1   MSVADLAFYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLD+D E  +    R    +  IGI+    +       V +    
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFEALKSEMARYMPVAALIGIVILLQLSMGIGAWVTAEGAP 120

Query: 121 -----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                 +    +  N   +G ++Y +Y Y  + +G ILL++M+GAI+L LR RRD+KRQ+
Sbjct: 121 GLRQAPTPDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+  +P  ++ +  VK G+G+
Sbjct: 181 VLAQMWRDPAEAMELKDVKPGQGL 204


>gi|15965028|ref|NP_385381.1| NADH dehydrogenase subunit J [Sinorhizobium meliloti 1021]
 gi|307301100|ref|ZP_07580869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti BL225C]
 gi|307317834|ref|ZP_07597272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti AK83]
 gi|15074207|emb|CAC45854.1| Probable NADH dehydrogenase I chain J transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306896596|gb|EFN27344.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti AK83]
 gi|306904055|gb|EFN34641.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti BL225C]
          Length = 204

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/204 (49%), Positives = 134/204 (65%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+LFFYLF+F+A+ S+F+V+  RNP+YSV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 1   MGLQALFFYLFAFIAVASAFMVIAARNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VF 115
           VYVGAV V FLF++MMLDID  E+     +   +G+    ILAAELIV          + 
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGALIGLILAAELIVVVGGSAFSPEIA 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                      +  N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR++IKRQ 
Sbjct: 121 KGIAMPIPAPSERTNTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLRHRQNIKRQS 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I +Q+   P+ ++ +V VK G+GI
Sbjct: 181 IPQQVARTPETAVEVVTVKPGQGI 204


>gi|84516723|ref|ZP_01004081.1| NADH dehydrogenase subunit J [Loktanella vestfoldensis SKA53]
 gi|84509191|gb|EAQ05650.1| NADH dehydrogenase subunit J [Loktanella vestfoldensis SKA53]
          Length = 201

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 124/201 (61%), Gaps = 2/201 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FYLF+   +      V  RNP++SV  LI AF+++AGLF+ LGAEFVAM+ ++
Sbjct: 1   MSVFAFTFYLFAISTVTGGLFTVISRNPVHSVLWLILAFLSSAGLFVTLGAEFVAMLMII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AE 118
           VYVGAV V FLF++MMLD+D    +    +    +  IG++    +  A     FS   E
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAGLKAEMTKYLPLALLIGVVILMQLAMALGVWGFSEGVE 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G ++  V + +N   +G +LY QY    ++SG ILL++MIGAIVL LRHR DIKRQ++  
Sbjct: 121 GRIAAPVGELDNTRALGMLLYDQYFLLFQLSGLILLVAMIGAIVLTLRHRVDIKRQNVLN 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+  +P  ++ +  VK G+G+
Sbjct: 181 QMYRDPAKAMELRDVKPGQGL 201


>gi|304391411|ref|ZP_07373353.1| NADH-quinone oxidoreductase chain 10 [Ahrensia sp. R2A130]
 gi|303295640|gb|EFL89998.1| NADH-quinone oxidoreductase chain 10 [Ahrensia sp. R2A130]
          Length = 203

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 131/204 (64%), Gaps = 6/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +LFFYLF+ + + S+F+V+  RNP++SV  LI  F NAAGLF+L GAEF+A+I +V
Sbjct: 1   MGVAALFFYLFATICVASAFMVIASRNPVHSVLFLILCFFNAAGLFMLTGAEFLALILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV V FLF++MMLD+D         +       IGI+ A  ++     + F  E  
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELRDGFLQYMPIGAVIGIILAVELILVLGGLSFDPEIA 120

Query: 120 ----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
               +    + + +N++ IG +LYT+Y +  ++ G ILL++MIGAIVL L HR D++RQ+
Sbjct: 121 ARAVQPIPDLAEVSNIQAIGDLLYTKYIFFFQLCGLILLVAMIGAIVLTLSHRPDVRRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I+ Q+  +P++ + +  VK G+GI
Sbjct: 181 IADQVARDPND-VELRSVKPGEGI 203


>gi|126736050|ref|ZP_01751794.1| NADH dehydrogenase (quinone) [Roseobacter sp. CCS2]
 gi|126714607|gb|EBA11474.1| NADH dehydrogenase (quinone) [Roseobacter sp. CCS2]
          Length = 201

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 2/201 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FYLF+   +    + V  RNP++SV  LI AF+++AGLF+ LGAEFVAM+ ++
Sbjct: 1   MTVFAFTFYLFAVTTVTGGLMTVVSRNPVHSVLWLILAFLSSAGLFVTLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AE 118
           VYVGAV V FLF++MMLD+D    +    +       IG++    +  A     F+   E
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMTKYLPLGLLIGVVILMQLALAFGVWGFADGVE 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G ++      +N   +G ++Y +Y    ++SG ILL++MIGAIVL LRHR DIKRQ++  
Sbjct: 121 GRIAAPTGDLDNTRALGLLIYDKYILLFQLSGLILLVAMIGAIVLTLRHRVDIKRQNVLA 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+  +P  ++ +  VK G+G+
Sbjct: 181 QMYRDPAKAMELKDVKPGQGL 201


>gi|163741478|ref|ZP_02148869.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis 2.10]
 gi|161385212|gb|EDQ09590.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis 2.10]
          Length = 200

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121
           VGAV V FLF++MMLD+D    +    R    +  IG++     V A      +      
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAYGAWETAPAAATQ 120

Query: 122 --SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               +    +N E +G ++Y QY    ++SG ILL++MIGAIVL LRHR+D+KRQD+  Q
Sbjct: 121 LAQPIPTDQHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPATAMELKDVKPGQGL 200


>gi|259418750|ref|ZP_05742667.1| NADH-quinone oxidoreductase subunit j [Silicibacter sp. TrichCH4B]
 gi|259344972|gb|EEW56826.1| NADH-quinone oxidoreductase subunit j [Silicibacter sp. TrichCH4B]
          Length = 198

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
             FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGA
Sbjct: 2   FAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---AEGELS 122
           V V FLF++MMLD+D    +    R    +  IG++     V A      +   A+    
Sbjct: 62  VAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVIAYGSWESAHDVAQNLSQ 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N E +G ++Y QY    +++G ILL++MIGAIVL LRHR+D+KRQD+  Q+  
Sbjct: 122 PIPVDRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDVLAQMYR 181

Query: 183 NPDNSIVMVKVKSGKGI 199
           +P  ++ +  +K G+G+
Sbjct: 182 DPAKAMELKDIKPGQGL 198


>gi|260434166|ref|ZP_05788137.1| NADH-quinone oxidoreductase subunit j [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417994|gb|EEX11253.1| NADH-quinone oxidoreductase subunit j [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 200

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM---VFSAEG 119
           VGAV V FLF++MMLD+D    +    R    +  IG++     V A         +A  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGAWESAQGAAAN 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               +    +N E +G +LY QY    +++G ILL++MIGAIVL LRHR+D+KRQD+  Q
Sbjct: 121 LAQPIPADRHNTEALGLILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRKDVKRQDVIAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPAQALELKDVKPGQGL 200


>gi|163732048|ref|ZP_02139494.1| NADH dehydrogenase subunit J [Roseobacter litoralis Och 149]
 gi|161394346|gb|EDQ18669.1| NADH dehydrogenase subunit J [Roseobacter litoralis Och 149]
          Length = 200

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+   I      V  RNP++SV  LI AF++AAGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MTVFAFYLFAISVIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVLLGAEFVAMLLIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLD+D    +    +    +  IG++       A      +A  E  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMSKYLPLALLIGVVLLMQFAIAFGAWESNAAAEGM 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                    +N E +G +LY QY    ++SG ILL++MIGAIVL LRHR D+KRQD+  Q
Sbjct: 121 RAQVTPVDRHNTEALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRSDVKRQDVVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VKSG+G+
Sbjct: 181 MMRDPAKAMELKDVKSGQGL 200


>gi|84686446|ref|ZP_01014340.1| NADH dehydrogenase subunit J [Maritimibacter alkaliphilus HTCC2654]
 gi|84665629|gb|EAQ12105.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2654]
          Length = 204

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 120/204 (58%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    FY F+   ++     V  RNP++SV  LI AF+ +AGLF++LGAEF+AM+ ++
Sbjct: 1   MTVADFAFYAFAVTTLVGGLFTVLARNPVHSVLWLIMAFIGSAGLFVVLGAEFLAMLLMI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLD+D    +    +    +  I ++    +        F+   E
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAGMAKYMPLALLIAVVLLMQMGMIYGTWQFADGAE 120

Query: 121 LSRLVFKGN-----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            +R     +     N   +G+++Y  Y    ++SG +LL++MIGAIVL LRHR+DIKRQD
Sbjct: 121 AARRAVTPDMTEVENTAALGQLIYDDYFLLFQLSGLVLLVAMIGAIVLTLRHRKDIKRQD 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+  +P  ++ +V VK G+G+
Sbjct: 181 VLAQMYRDPAKALELVDVKPGQGL 204


>gi|260574772|ref|ZP_05842775.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodobacter
           sp. SW2]
 gi|259023189|gb|EEW26482.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodobacter
           sp. SW2]
          Length = 204

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 122/204 (59%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    FYLF+F+ + S+ LV   RNP++SV  LI AF++ AGLF+LLGAEFVAM+ ++
Sbjct: 1   MNVADYAFYLFAFVTLTSALLVTVSRNPVHSVLWLILAFISTAGLFVLLGAEFVAMLLMI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFMVF 115
           VYVGAV V FLF++MMLDID      +  R        G++        L V        
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFAALRGKMTRYLPIGLAFGVVLLLEFSMALFVWVQADGAV 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +    ++    +  N   +G ++Y +Y Y  + +G ILL++MIGAI+L LRHR+DIKRQ+
Sbjct: 121 AMRQAVAPDPGQVENTRALGLLIYDKYIYLFQAAGLILLVAMIGAILLTLRHRKDIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+  +P  ++ +  +K G+G+
Sbjct: 181 VLHQMWRDPAKTMEIKDIKPGQGL 204


>gi|103486786|ref|YP_616347.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingopyxis
           alaskensis RB2256]
 gi|98976863|gb|ABF53014.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingopyxis
           alaskensis RB2256]
          Length = 203

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 130/200 (65%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + FYLF+ + I S+ +V+  RNP++SV  LI AF NAAGL LL GAEF+AM+ ++VY
Sbjct: 2   IQLIAFYLFATIVIASAAMVIFARNPVHSVMWLILAFFNAAGLMLLAGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--G 119
           VGAV V FLF++MMLDID  E+     +   LG+    ILAAELI     +     +   
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAELRAGFVRYLPLGALVAIILAAELIFAVGAWSAGGVDLAA 121

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             + +V   +N++ IG++LYT+Y +  E +G +LL++MIGAIVL  R R  ++ Q+IS+Q
Sbjct: 122 RTAPVVSDKSNIQQIGELLYTKYIFLFEAAGIVLLVAMIGAIVLTHRQRGGVRAQNISQQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +   P+++  +V   +G+G+
Sbjct: 182 VRRRPEDATRLVDPGTGQGV 201


>gi|167585981|ref|ZP_02378369.1| NADH dehydrogenase subunit J [Burkholderia ubonensis Bu]
          Length = 217

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 121/205 (59%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+      +R F     +  +   +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDF----LRRDFKKFVPMATVVGAIIVVETALVLWHGYGA 116

Query: 121 LSRLV--------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               V            N   IGKV+YT Y +  EI+G +LL+++I A+ L  R  +D K
Sbjct: 117 TEAPVRAMAQGAMATWPNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTERKGKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ +S Q++   D+ + +VK+++ K
Sbjct: 177 RQRVSDQVKVRRDDRVRLVKMEADK 201


>gi|149202656|ref|ZP_01879628.1| NADH dehydrogenase subunit J [Roseovarius sp. TM1035]
 gi|149143938|gb|EDM31972.1| NADH dehydrogenase subunit J [Roseovarius sp. TM1035]
          Length = 202

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 80/202 (39%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FYLF+   +    + V  RNP++SV  LI +F++AAGLF+LLGAEFVAM+ ++
Sbjct: 1   MTFAAMAFYLFAVSLLTGGLMTVISRNPVHSVLWLILSFISAAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLD+D    +    +    +  IG++       A      +   E
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMAKYMPLALLIGVILLMQFGLAFGNWEMADGAE 120

Query: 121 LSR---LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            +R         N   +G +LY  Y    ++SG ILL++MIGAIVL LRHR D+KRQD+ 
Sbjct: 121 AARRAVTPEGVENTAALGLLLYDTYFILFQLSGLILLVAMIGAIVLTLRHRTDVKRQDVL 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ +  VK G+G+
Sbjct: 181 AQMYRDPAKAMELRDVKPGQGL 202


>gi|86749701|ref|YP_486197.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris HaA2]
 gi|86572729|gb|ABD07286.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
          Length = 212

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 128/202 (63%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  LFFYL++  AI ++ +VV  RNP++S   LI  FVNAAG+F+L+GAEF+AMI +V
Sbjct: 1   MSMPVLFFYLYAGAAIAAAVMVVFARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VYVGAV V FLF+IMMLD+D                 IG +    ++  +   V +    
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFSRLREGFLEYLPFGLLIGFIFLAELLLLAGGWVITPTVT 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   + +    +N E +G VLYT+Y +  +ISG ILL++MIGAIVL LRH++ +KRQ+IS
Sbjct: 121 KTITAPIPTDVSNTEALGLVLYTRYIHYFQISGVILLVAMIGAIVLTLRHKKSVKRQNIS 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           +Q   + + ++ + KVK G+G+
Sbjct: 181 EQNARSKETAMAIRKVKPGQGL 202


>gi|114765007|ref|ZP_01444154.1| NADH dehydrogenase subunit J [Pelagibaca bermudensis HTCC2601]
 gi|114542554|gb|EAU45579.1| NADH dehydrogenase subunit J [Roseovarius sp. HTCC2601]
          Length = 202

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+   I+     V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MTVFAFYLFALCTIVGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-----LAAELIVCASNFMVFSA 117
           VGAV V FLF++MMLD+D         +    +  IG+     L     V   + +  S 
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELRAGMAKYMPLALLIGVILLMQLGMAFGVWEVSEIAASQ 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               + L  +  N   +G +LY +Y    +++G ILL++MIGAIVL LRHR+D+KRQ++ 
Sbjct: 121 LSAPTPLATETQNTAALGLLLYDRYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQNVL 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ +  VK G+G+
Sbjct: 181 AQMYRDPKKAMELRDVKPGQGL 202


>gi|163738811|ref|ZP_02146225.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis BS107]
 gi|161388139|gb|EDQ12494.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis BS107]
          Length = 200

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121
           VGAV V FLF++MMLD+D    +    R    +  IG++     V A      +      
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGAWETAPAAATQ 120

Query: 122 --SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               +    +N E +G ++Y QY    ++SG ILL++MIGAIVL LRHR+D+KRQD+  Q
Sbjct: 121 LAQPIPADQHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPATAMELKDVKPGQGL 200


>gi|170696390|ref|ZP_02887519.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           graminis C4D1M]
 gi|170138718|gb|EDT06917.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           graminis C4D1M]
          Length = 228

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 124/207 (59%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     +R    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDVLRKDFRRFVPMATVVG----AIIVLETALILWHGYGA 116

Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            S +V             +N   IGKV+YT Y +  E++G +LL+++I AI L   H++D
Sbjct: 117 TSTVVPDTTAAAGGMGDWSNTRLIGKVIYTDYIFAFEVAGLVLLVAIIAAIALTTSHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ IS Q++    + + +VK+ S K
Sbjct: 177 SKRQKISDQVKVRAQDRVRVVKMPSEK 203


>gi|218200865|gb|EEC83292.1| hypothetical protein OsI_28652 [Oryza sativa Indica Group]
          Length = 673

 Score =  180 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 80/205 (39%), Positives = 125/205 (60%), Gaps = 8/205 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F V+T RNP+++V  LI AF  AA ++LLL AEF+A+  ++
Sbjct: 452 MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALVL 511

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113
           VY+GAV+V FLF++MMLDI I+       R F  + FIG L A  +              
Sbjct: 512 VYLGAVMVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEP 571

Query: 114 -VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
              +A  + +  V + +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR R+D K
Sbjct: 572 KAVAAMVDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTK 631

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
              +S+Q+     + + +VKV + +
Sbjct: 632 VTKVSEQVRVRAADRVALVKVAATQ 656


>gi|86137585|ref|ZP_01056162.1| NADH dehydrogenase I, J subunit [Roseobacter sp. MED193]
 gi|85825920|gb|EAQ46118.1| NADH dehydrogenase I, J subunit [Roseobacter sp. MED193]
          Length = 200

 Score =  180 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 123/200 (61%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM--VFSAEGE 120
           VGAV V FLF++MMLD+D    +    +    +  IG++     V A         A  +
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAALKAEMAQYMPLALLIGLVILMQFVMAYGSWESAHGAAAQ 120

Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           L++ + +  +N E +G ++Y QY    ++SG ILL++MIGAI L LRHR+D+KRQD+  Q
Sbjct: 121 LAQPIPEDRHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAITLTLRHRKDVKRQDVMLQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  +K G+G+
Sbjct: 181 MSRDPAKAMELKDIKPGQGL 200


>gi|260428617|ref|ZP_05782596.1| NADH-quinone oxidoreductase subunit j [Citreicella sp. SE45]
 gi|260423109|gb|EEX16360.1| NADH-quinone oxidoreductase subunit j [Citreicella sp. SE45]
          Length = 200

 Score =  180 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 78/200 (39%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLFS   I+     V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MTVFAFYLFSLCTILGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEG 119
           VGAV V FLF++MMLD+D         +    +  IG++      +   A      +A  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELRAGMAKYMPLALLIGVVILMQLGMAFGAWETSDLAAGQ 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             + +     N   +G ++Y +Y    +++G ILL++MIGAIVL LRHR+D+KRQ++  Q
Sbjct: 121 LSAPVPGDMQNTAALGVLIYDRYFLAFQLAGLILLVAMIGAIVLTLRHRQDVKRQNVLAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MWRDPAKAMELKDVKPGQGL 200


>gi|254469512|ref|ZP_05082917.1| NADH-quinone oxidoreductase chain j [Pseudovibrio sp. JE062]
 gi|211961347|gb|EEA96542.1| NADH-quinone oxidoreductase chain j [Pseudovibrio sp. JE062]
          Length = 204

 Score =  180 bits (458), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 92/204 (45%), Positives = 144/204 (70%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+Q+LFFYLF+ +A+ S+F+V+  RNP++SV  LI  F NAAGLF+L+GAE++AM+ +V
Sbjct: 1   MVLQALFFYLFAALAVASAFMVIASRNPVHSVLFLILCFFNAAGLFVLIGAEYLAMLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE- 118
           VYVGAV+V FLF++MMLD+D  E+ +   +   +G+    IL  EL++  S + +     
Sbjct: 61  VYVGAVMVLFLFVVMMLDVDFAEMRQGFLQYLPIGALIGVILLVELLMVVSGWYIAPGML 120

Query: 119 ---GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                 +  V +  N+  IG++LYT+Y Y  +++G +LL++MIGAIVL LRH+  ++RQ+
Sbjct: 121 GEGSAPTPPVEQTQNIAAIGELLYTRYIYWFQVAGLVLLVAMIGAIVLTLRHKPGVRRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           IS+Q+   P+ +I +VKV+SGKG+
Sbjct: 181 ISEQVARRPETAIEVVKVESGKGL 204


>gi|83746306|ref|ZP_00943359.1| NADH-quinone oxidoreductase chain J [Ralstonia solanacearum UW551]
 gi|207742744|ref|YP_002259136.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia
           solanacearum IPO1609]
 gi|300703651|ref|YP_003745253.1| NADH-quinone oxidoreductase subunit j [Ralstonia solanacearum
           CFBP2957]
 gi|83727056|gb|EAP74181.1| NADH-quinone oxidoreductase chain J [Ralstonia solanacearum UW551]
 gi|206594138|emb|CAQ61065.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia
           solanacearum IPO1609]
 gi|299071314|emb|CBJ42632.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum
           CFBP2957]
          Length = 210

 Score =  180 bits (458), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 116/199 (58%), Gaps = 2/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MM+DIDIE              F+G  I+    +V    FM  S  
Sbjct: 61  VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQP 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +       G N + +GK++YT Y Y  EI+G +LLL+++ A+ L  R R+D K Q ++ 
Sbjct: 121 VQELPKALSGPNTQALGKLIYTDYLYAFEIAGAVLLLAIVAAVALTARRRKDTKAQKVAD 180

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+     + + +V + + K
Sbjct: 181 QVRVQRKDRVRLVSMPAEK 199


>gi|110633385|ref|YP_673593.1| NADH dehydrogenase subunit J [Mesorhizobium sp. BNC1]
 gi|110284369|gb|ABG62428.1| NADH dehydrogenase subunit J [Chelativorans sp. BNC1]
          Length = 206

 Score =  180 bits (458), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 86/202 (42%), Positives = 138/202 (68%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++++FFYLF+F+ + ++F+V++ RNP++SV  LI  F NAA LFLL GAEF+AMI L+VY
Sbjct: 5   LEAIFFYLFAFIGVAAAFMVISARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLIVY 64

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VFSA 117
           VGAV V FLF++MMLD+D  E+ +   +   +G+    ILA ELIV    +     + + 
Sbjct: 65  VGAVAVLFLFVVMMLDVDFAELKQGALQYAPVGAIVGIILAVELIVVLGGYAFTPEIAAE 124

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
             + +  + + +N   +G +LYT Y Y  +++G ILL++M+GAIVL LRH+ +++RQ+I+
Sbjct: 125 IAQPAPAIAERHNTAALGDILYTNYFYFFQVAGLILLVAMVGAIVLTLRHKPNVRRQNIA 184

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+   P  +I + KV++G+GI
Sbjct: 185 AQVARTPATAIEIRKVETGEGI 206


>gi|227821628|ref|YP_002825598.1| NADH dehydrogenase subunit J [Sinorhizobium fredii NGR234]
 gi|227340627|gb|ACP24845.1| NADH dehydrogenase subunit J [Sinorhizobium fredii NGR234]
          Length = 204

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/204 (47%), Positives = 129/204 (63%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q LFFYLF+F+A+ S+F+V+  +NP+YSV  LI  F NAAGLFLL GAEF+AMI LV
Sbjct: 1   MGLQVLFFYLFAFIAVASAFMVIAAKNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VYVGAV V FLF++MMLDID                 IG++ A  ++       FS E  
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFAELRAGVLEYAPVGALIGLILAAELIIVVGGSTFSPEIA 120

Query: 119 ---GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                    V +  N   +G VLYT Y Y  +I+G +LL++MIGAIVL LRHR +IKRQ 
Sbjct: 121 KGIAMPIPAVTERTNTAALGDVLYTHYIYFFQIAGLVLLVAMIGAIVLTLRHRENIKRQS 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I +Q+  +P+ ++ +V VK G+G+
Sbjct: 181 IPRQVARSPETAVEVVTVKPGQGL 204


>gi|310816704|ref|YP_003964668.1| NADH dehydrogenase subunit J [Ketogulonicigenium vulgare Y25]
 gi|308755439|gb|ADO43368.1| NADH dehydrogenase subunit J [Ketogulonicigenium vulgare Y25]
          Length = 204

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 123/198 (62%), Gaps = 3/198 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +  FY+F+   +I   + VT RNP+++V  LI AF++AAGLF+L GAEFVAMI ++VYVG
Sbjct: 2   AFIFYVFAAGTLIGGLMTVTARNPVHAVLWLISAFLSAAGLFVLQGAEFVAMILMIVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE--L 121
           AV V FLF++MMLD+D      + +        IG +LAA+L++   ++           
Sbjct: 62  AVAVLFLFVVMMLDVDFAALRAKSRAFVPVGVVIGAVLAAQLVMVFGDWSAAPGASARLA 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +      +N   +  +LY +Y    +++G +LL++MIGAIVL +RHR+D+KRQ++ +Q+ 
Sbjct: 122 TPTPAGVDNTHALALILYDRYFIAFQLAGLVLLVAMIGAIVLTMRHRQDVKRQNVLEQMS 181

Query: 182 SNPDNSIVMVKVKSGKGI 199
            +P  +I M    SG+G+
Sbjct: 182 RDPAKAIRMANPGSGQGL 199


>gi|207723882|ref|YP_002254280.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia
           solanacearum MolK2]
 gi|206589087|emb|CAQ36049.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia
           solanacearum MolK2]
          Length = 210

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/199 (33%), Positives = 116/199 (58%), Gaps = 2/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MM+D+DIE              F+G  I+    +V    FM  S  
Sbjct: 61  VYVGAVMVLFLFVVMMIDVDIEHLRRDFWTYVPMGAFVGAIIIMEMAVVLTKAFMGRSQP 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +       G N + +GK++YT Y Y  EI+G +LLL+++ A+ L  R R+D K Q ++ 
Sbjct: 121 VQELPKALSGPNTQALGKLIYTDYLYAFEIAGAVLLLAIVAAVALTARRRKDTKAQKVAD 180

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+     + + +V + + K
Sbjct: 181 QVRVQRKDRVRLVSMPAEK 199


>gi|167836058|ref|ZP_02462941.1| NADH dehydrogenase subunit J [Burkholderia thailandensis MSMB43]
          Length = 218

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+V     +R    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDVLRRDFRRFVPMATVVG----AIIVVETALILWRGYGA 116

Query: 121 LSRLVFK--------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               V            N + IGKV+YT Y +  EI+G +LL+++I A+ L  +  +D K
Sbjct: 117 TGSPVHDMAAGAAAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ +S+Q++   ++ + +VK+++ K
Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201


>gi|330994063|ref|ZP_08317993.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter sp.
           SXCC-1]
 gi|329759009|gb|EGG75523.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter sp.
           SXCC-1]
          Length = 257

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/201 (39%), Positives = 126/201 (62%), Gaps = 4/201 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+F+ + ++S+ +VV  RNP++SV  LI AF NAAGLFL+ GAEF+AM  ++VY
Sbjct: 2   MTQIVFYVFAAVLVLSATMVVCARNPVHSVLFLILAFFNAAGLFLIAGAEFLAMTLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD++   + E  ++   +G    G+L  EL++  + +   S   ++
Sbjct: 62  VGAVAVLFLFVVMMLDVNFTRMREGVQRYAPIGGLVGGVLLVELVMAFARWRSASNIDQI 121

Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           + LV       N   +G V+YT Y +  +    +LL++MIGAIVL LR R   +RQ+I +
Sbjct: 122 AHLVPSSPTRTNTAALGDVIYTHYIFLFQSCALVLLVAMIGAIVLTLRDRPSGRRQNIDR 181

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q +  P +S+ M++V  G G+
Sbjct: 182 QHDRVPHDSLEMLQVPLGAGV 202


>gi|85703192|ref|ZP_01034296.1| NADH dehydrogenase subunit J [Roseovarius sp. 217]
 gi|85672120|gb|EAQ26977.1| NADH dehydrogenase subunit J [Roseovarius sp. 217]
          Length = 202

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/202 (40%), Positives = 122/202 (60%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FYLF+   +I     V  RNP++SV  LI +F++AAGLF+LLGAEFVAM+ ++
Sbjct: 1   MTIAAMAFYLFAVSLLIGGLFTVISRNPVHSVLWLILSFISAAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D    +    +    +  IG IL  +  +   N+ +     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMAKYMPLALLIGVILLMQFGLVFGNWQMADGAE 120

Query: 120 ELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
              R V      N   +G +LY  Y    +++G ILL++MIGAIVL LRHR D+KRQD+ 
Sbjct: 121 AARRSVTPDGVENTAALGLLLYDTYFILFQLAGLILLVAMIGAIVLTLRHRTDVKRQDVL 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ +  VK G+G+
Sbjct: 181 AQMYRDPAKAMELRDVKPGQGL 202


>gi|91782621|ref|YP_557827.1| NADH dehydrogenase subunit J [Burkholderia xenovorans LB400]
 gi|296160638|ref|ZP_06843453.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. Ch1-1]
 gi|91686575|gb|ABE29775.1| NADH dehydrogenase subunit J [Burkholderia xenovorans LB400]
 gi|295889164|gb|EFG68967.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. Ch1-1]
          Length = 229

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 126/207 (60%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDVLRKDFKRFVPMATLVG----AIIVIETALILWHGYGA 116

Query: 121 LSRL----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +            +   +N   IGK++YT Y +  E++G +LL+++I AI L   H++D
Sbjct: 117 TATALRDTTAAANGMGDWSNTRLIGKIIYTDYIFAFEVAGLVLLVAIIAAIALTTSHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ++S+Q++    + + +VK+KS K
Sbjct: 177 SKRQNVSEQVKVRAQDRVRVVKMKSEK 203


>gi|149927550|ref|ZP_01915804.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Limnobacter
           sp. MED105]
 gi|149823823|gb|EDM83049.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Limnobacter
           sp. MED105]
          Length = 210

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 112/195 (57%), Gaps = 2/195 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   + FFY+F+ + + ++  V+T  N +++   L+ +F +A+ L++LL AEF+A+  ++
Sbjct: 1   MDAITGFFYVFAAILVFAAVRVITASNAVHAALYLVLSFFSASALWMLLEAEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MM+D++++       +    +  +G L A  +        +    E
Sbjct: 61  VYVGAVMVLFLFVVMMVDVNMDKVRAGFWKNLPVAAIVGSLIAFQMSVVLLRGFWDPNLE 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                   NN E +GK+LYT+Y YP E++  ILL++M+ AI L LR R+D K Q  S Q+
Sbjct: 121 TPEQAA--NNTEALGKLLYTEYLYPFEVAALILLVAMVAAIALTLRKRKDTKGQVPSDQV 178

Query: 181 ESNPDNSIVMVKVKS 195
                + + +V + +
Sbjct: 179 RVKSTDRVKLVSMPA 193


>gi|94309881|ref|YP_583091.1| NADH dehydrogenase subunit J [Cupriavidus metallidurans CH34]
 gi|93353733|gb|ABF07822.1| NADH dehydrogenase chain J [Cupriavidus metallidurans CH34]
          Length = 225

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/197 (37%), Positives = 119/197 (60%), Gaps = 3/197 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FY+F+ + ++S+  V+T +NP++S   L+ AF  AA ++++L AEF+A++ L+
Sbjct: 13  MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLAFFTAAAIWMILKAEFLAILLLL 72

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFM-VFSA 117
           VYVGAV+V FLF++MM+DIDIE            +  IG  I+A   IV   NF+   +A
Sbjct: 73  VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMASIIGALIIAEMAIVLVRNFIGTTNA 132

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
                      +N   +GK++YT Y Y  E++G ILL+++I A+ L LR R+D+K QD+ 
Sbjct: 133 VLPPGAQDPNYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRRKDVKAQDVG 192

Query: 178 KQLESNPDNSIVMVKVK 194
            QL    D  + +VK+ 
Sbjct: 193 AQLRVRRDERVRLVKLP 209


>gi|126740390|ref|ZP_01756078.1| NADH dehydrogenase subunit J [Roseobacter sp. SK209-2-6]
 gi|126718526|gb|EBA15240.1| NADH dehydrogenase subunit J [Roseobacter sp. SK209-2-6]
          Length = 200

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 118/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+  AI      V  R P++SV  LI AF+++AGLF+LLGAEFVAM+ ++VY
Sbjct: 1   MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLD+D    +    +    +  IG++     V A      +      
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAALKAEMAQYMPLALLIGLVILMQFVMAYGSWESAHGASEL 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                    +N E +G ++Y QY    ++SG ILL++MIGAI+L LRHR+D+KRQD+  Q
Sbjct: 121 LAQPTPADKHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIMLTLRHRQDVKRQDVLAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MYRDPAKAMELKDVKPGQGL 200


>gi|316933902|ref|YP_004108884.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Rhodopseudomonas palustris DX-1]
 gi|315601616|gb|ADU44151.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodopseudomonas palustris DX-1]
          Length = 212

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/202 (42%), Positives = 129/202 (63%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  LFFYL++ +AI ++ +VV  RNP++S   LI  FVNAAG+F+L+GAEF+AMI +V
Sbjct: 1   MSMPVLFFYLYAGVAIAAAVMVVFARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VYVGAV V FLF+IMMLD+D                 IG++    ++  +   V S    
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDYSELREGFLEYLPFGLLIGVIFLAELLLLAGGWVISPTVT 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   + +    +N E +G VLYT+Y +  ++SG ILL++M+GAIVL LRH++ +KRQDI+
Sbjct: 121 KTVTAPIPADVSNTEALGLVLYTRYIHYFQVSGMILLVAMVGAIVLTLRHKKKVKRQDIA 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q   + + ++ +  VK+G+G+
Sbjct: 181 AQNARSKETAMAIRHVKTGQGL 202


>gi|307730331|ref|YP_003907555.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1003]
 gi|307584866|gb|ADN58264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1003]
          Length = 229

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 125/207 (60%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDVLRKDFKRFVPMATLVG----AIIVLETALILWHGYGA 116

Query: 121 LSRLV----------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            S +V             +N   IGKV+YT Y +  EI+G +LL+++I AI L   H++D
Sbjct: 117 TSTVVRDTTAAASGMGDWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIALTTSHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ IS+Q++    + + +VK+ S K
Sbjct: 177 SKRQKISQQVKVRAQDRVRVVKMPSEK 203


>gi|77463083|ref|YP_352587.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides 2.4.1]
 gi|126461955|ref|YP_001043069.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides ATCC 17029]
 gi|332557956|ref|ZP_08412278.1| NADH:ubiquinone oxidoreductase subunit J [Rhodobacter sphaeroides
           WS8N]
 gi|77387501|gb|ABA78686.1| NADH dehydrogenase I-ubiquinone oxidoreductase subunit 6 (chain J)
           [Rhodobacter sphaeroides 2.4.1]
 gi|126103619|gb|ABN76297.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029]
 gi|332275668|gb|EGJ20983.1| NADH:ubiquinone oxidoreductase subunit J [Rhodobacter sphaeroides
           WS8N]
          Length = 204

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/204 (36%), Positives = 126/204 (61%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  + FY F+  A+ ++ +VVT RN +++V  LI  F+++AG+F+LLGAEFVAM+ ++
Sbjct: 1   MSVADVAFYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D E  +    R    +  +GI +  +L +    ++      
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFEALKSEVVRYMPVAALMGIVILLQLSMGIGAWVTADGAP 120

Query: 120 ELSRLVFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            + + V        N   +G ++Y +Y Y  + +G ILL++M+GAI+L LR RRD+KRQ+
Sbjct: 121 AMRQAVTPDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+  +P  ++ +  VK G+G+
Sbjct: 181 VLAQMWRDPAKAMELKDVKPGQGL 204


>gi|89070161|ref|ZP_01157490.1| NADH dehydrogenase I, J subunit [Oceanicola granulosus HTCC2516]
 gi|89044278|gb|EAR50424.1| NADH dehydrogenase I, J subunit [Oceanicola granulosus HTCC2516]
          Length = 196

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/196 (41%), Positives = 122/196 (62%), Gaps = 3/196 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY+F+   I      V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV
Sbjct: 1   MFYVFAVTTIAGGLFTVVSRNPVHSVLWLILAFLSSAGLFILLGAEFVAMLLVIVYVGAV 60

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSR 123
            V FLF++MMLD+D    +    R    +  IGI+    +  A     F A   E   + 
Sbjct: 61  AVLFLFVVMMLDVDFAALKAEMARYMPLALLIGIVILMQLALAFGVWTFGAGVDERLAAP 120

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           +V   +N E +G +LY +Y    +++G ILL++MIGAIVL LRHR D+KRQ++ +Q+  +
Sbjct: 121 VVGGVHNTEGLGFLLYDRYILLFQLAGLILLVAMIGAIVLTLRHREDVKRQNVLEQMYRD 180

Query: 184 PDNSIVMVKVKSGKGI 199
           P  ++ +  VK G+G+
Sbjct: 181 PATAMELRDVKPGQGL 196


>gi|325983280|ref|YP_004295682.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas
           sp. AL212]
 gi|325532799|gb|ADZ27520.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas
           sp. AL212]
          Length = 201

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/199 (35%), Positives = 116/199 (58%), Gaps = 2/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ Q + FY FS + I+S+  V+ VRNP+ S   L+ +FV  AGL+LLL AEF+A+  ++
Sbjct: 1   MIFQDILFYSFSAILIVSALGVIIVRNPVNSALLLVLSFVTCAGLWLLLEAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI+++       + F     I ++    I  V    +  +   
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDRLREGFWKWFPFGAMIALVIVVEISMVLMGKYFGYEEM 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                     +N + +G+++YT+Y Y  E++  +LL++MI AI L LRHR D K  +  K
Sbjct: 121 PIPEPKGADYSNTKELGRLIYTEYVYAFELAAVLLLVAMIAAIALTLRHREDKKSTNPFK 180

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q++   ++ I +V + + K
Sbjct: 181 QVKVKKEDRIRIVSMSAEK 199


>gi|253996964|ref|YP_003049028.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera
           mobilis JLW8]
 gi|253983643|gb|ACT48501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera
           mobilis JLW8]
          Length = 226

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 112/196 (57%), Gaps = 2/196 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            Q + FY  + + +I+   V+T RNP+Y+   L+ AF  AAG++LLL AEF+A+  ++VY
Sbjct: 8   FQDIVFYTLATILLIAGLRVITTRNPVYAALYLVLAFFTAAGIWLLLEAEFLAIALVLVY 67

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV+V FLF++MMLDI+++       +    +  +G L A  +V       F  +   +
Sbjct: 68  VGAVMVLFLFVVMMLDINLDKLREGFWKALPVALPVGGLMAVEMVMVVGARNFGVDVVAA 127

Query: 123 RL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                   +N   +G+VLYT Y    E++  +LL++++ AI L LR RRD K  D +KQ+
Sbjct: 128 PPAHPADYSNTAELGRVLYTDYLLSFELASVVLLVAIVAAIALTLRDRRDSKSMDPAKQV 187

Query: 181 ESNPDNSIVMVKVKSG 196
                + I +VK+++ 
Sbjct: 188 LVKKADRIRIVKMEAE 203


>gi|85717020|ref|ZP_01047982.1| NADH dehydrogenase subunit J [Nitrobacter sp. Nb-311A]
 gi|85696144|gb|EAQ34040.1| NADH dehydrogenase subunit J [Nitrobacter sp. Nb-311A]
          Length = 211

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/196 (43%), Positives = 123/196 (62%), Gaps = 3/196 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FFYLF+ + + S+ +V++ RNP++SV  LI AFVNAAGLF+LLGAEF+AMI +VVYVGAV
Sbjct: 6   FFYLFAGVCVASAVMVISSRNPVHSVLFLILAFVNAAGLFILLGAEFLAMILIVVYVGAV 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELSR 123
            V FLF+IMMLD+D                 I  +      L+V          +   + 
Sbjct: 66  AVLFLFVIMMLDVDFAELREGFLEYLPFGLVIAAIFLLELLLVVGGWTLNPTVTKSITAA 125

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           +    +N E +G VLYT+Y +  +++G +LL++MIGAIVL LRHR  +KRQDI+ Q    
Sbjct: 126 IPGDVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHRVSVKRQDINVQNART 185

Query: 184 PDNSIVMVKVKSGKGI 199
           P+ ++ + +V SG+G+
Sbjct: 186 PEMAMSVRQVASGQGL 201


>gi|126729569|ref|ZP_01745382.1| NADH dehydrogenase subunit J [Sagittula stellata E-37]
 gi|126709688|gb|EBA08741.1| NADH dehydrogenase subunit J [Sagittula stellata E-37]
          Length = 200

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 124/200 (62%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FYLF+   I      V  RNP++SV  LI AF+++AGLF+L+GAEFVAM+ ++VY
Sbjct: 1   MMAFAFYLFALGVIAGGLFTVVSRNPVHSVLWLILAFLSSAGLFVLMGAEFVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGE 120
           VGAV V FLF++MMLD+D    +    R    +  IG++    +  A      S  A G+
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQLAMAFGVWEASDLAAGQ 120

Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           LS    +G  N   +G +LY +Y    ++SG ILL++MIGAIVL LRHR+D+KRQD+  Q
Sbjct: 121 LSAPAPEGIENTAALGMILYDKYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVLAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  V+ G+G+
Sbjct: 181 MYRDPAKAMELRDVRPGQGL 200


>gi|154253656|ref|YP_001414480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Parvibaculum
           lavamentivorans DS-1]
 gi|154157606|gb|ABS64823.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Parvibaculum
           lavamentivorans DS-1]
          Length = 204

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 125/204 (61%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++ FYLF+ + + + F+V++ RNP++SV  LI AF NAA LF+LLGAEF+A I ++
Sbjct: 1   MIGTAIAFYLFAGITVAAGFMVISARNPVHSVLFLILAFFNAAALFVLLGAEFIAFILVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115
           VYVGAV V FLF++MMLD+D         +       IGI+    ++      V      
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVELREGFLQYLPIGALIGIILLIELLLVLGGWVIAPGAG 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           S     + ++   +N   +G+V+YTQY Y  + +G ILL++M+GAIVL LRH+ ++KRQ 
Sbjct: 121 SVAASPTPILTDVDNTRALGQVIYTQYVYLFQAAGLILLVAMVGAIVLTLRHKTNVKRQV 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           IS Q+    +  + + KV+ G+G+
Sbjct: 181 ISDQVARTRETGVELKKVEPGQGL 204


>gi|296536147|ref|ZP_06898275.1| NADH-quinone oxidoreductase subunit J [Roseomonas cervicalis ATCC
           49957]
 gi|296263518|gb|EFH10015.1| NADH-quinone oxidoreductase subunit J [Roseomonas cervicalis ATCC
           49957]
          Length = 241

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 7/202 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +L FY+F+ + I S+ +VVT RNP++SV  LI AF NAA LFL+ GAEF+AMI ++VY
Sbjct: 2   IAALAFYVFAAILIASAVMVVTSRNPVHSVLFLILAFFNAAALFLIAGAEFLAMILVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLFI+MMLDID   + E  ++   +G+    IL  EL+    ++        L
Sbjct: 62  VGAVAVLFLFIVMMLDIDFARLREGFQRYAPIGAVIGAILFLELLFVFGSWQFAPDAAAL 121

Query: 122 ---SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDIS 177
                      N E +G ++YT Y +  +++G ILL++MIGAIVL LR +  + KRQDI+
Sbjct: 122 RLNPAPDAGVTNTEALGLLVYTDYVFLFQLAGLILLVAMIGAIVLTLRDKPANSKRQDIA 181

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+      ++ M +V S  G+
Sbjct: 182 VQVAR--GEAVTMKQVPSRAGL 201


>gi|323525445|ref|YP_004227598.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1001]
 gi|323382447|gb|ADX54538.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1001]
          Length = 227

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 125/207 (60%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDVLRKDFKRFVPMATVVG----AIIVLETALILWHGYGA 116

Query: 121 LSRLV----------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            S +V             +N   IGKV+YT Y +  EI+G +LL+++I AI L   H++D
Sbjct: 117 TSTVVRDTTAAASGMGDWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIALTTSHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ IS+Q++    + + +VK+ S K
Sbjct: 177 SKRQTISQQVKVRAQDRVRVVKMPSEK 203


>gi|182679343|ref|YP_001833489.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182635226|gb|ACB96000.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 202

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q+ FF LFS + I+S+ +V+  RNP++SV  LI AF NAAGLF++LGAEF+AMI +V
Sbjct: 1   MDVQAFFFTLFSTVMIVSAIMVIAARNPVHSVLFLILAFCNAAGLFVMLGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF---SA 117
           VYVGA+ V FLF++MMLD+D    +    +       IG +    +       V    S 
Sbjct: 61  VYVGAIAVLFLFVVMMLDVDFTEFKQGFLQYLPVGALIGAVVLVELFLVLGSWVAGSGSV 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               + +    +N   +G+VLYTQY Y  + +  +LL +MIGAIVL LRH+  +KRQDI+
Sbjct: 121 TAIATPVPPGMSNTMALGRVLYTQYLYLFQAAAMVLLTAMIGAIVLTLRHKVGVKRQDIA 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q    P ++I + KV SG+G+
Sbjct: 181 AQNARTPVDAIEIRKVASGQGL 202


>gi|241663475|ref|YP_002981835.1| NADH dehydrogenase subunit J [Ralstonia pickettii 12D]
 gi|309781861|ref|ZP_07676594.1| NADH dehydrogenase (ubiquinone), J subunit [Ralstonia sp.
           5_7_47FAA]
 gi|240865502|gb|ACS63163.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ralstonia
           pickettii 12D]
 gi|308919502|gb|EFP65166.1| NADH dehydrogenase (ubiquinone), J subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 210

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 118/199 (59%), Gaps = 2/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY F+ + ++++  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFALVLVLAALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118
           VYVGAV+V FLF++MM+DIDIE            + F+G++      +V    FM     
Sbjct: 61  VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMAAFVGVVIILEMAVVLTKTFMGRVQP 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +     F G N + +GK++YT Y Y  E++G +LLL+++ A+ L  R R+D K Q++S 
Sbjct: 121 VQELPKGFNGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDTKAQNVSD 180

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+     + + +V + + K
Sbjct: 181 QIRVKRKDRVRLVSMPAEK 199


>gi|159043873|ref|YP_001532667.1| NADH dehydrogenase subunit J [Dinoroseobacter shibae DFL 12]
 gi|157911633|gb|ABV93066.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Dinoroseobacter shibae DFL 12]
          Length = 204

 Score =  177 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 121/204 (59%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  + FYLF+   + +   V   RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++
Sbjct: 1   MTVADITFYLFAITVVTAGLFVTLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VYVGAV V FLF++MMLD+D    +         +  IGI+    +        FS E  
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMASYIPMAALIGIVLLMQLAMVFGNWTFSEEAL 120

Query: 119 ---GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
              G ++  + +  N   +G ++Y  Y    + SG ILL++MIGAIVL LRHR  IKRQ+
Sbjct: 121 AQRGAVTPDLNEVQNTAALGLLIYDDYILLFQASGLILLVAMIGAIVLTLRHRVGIKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q++ +P  ++ +  VK G+G+
Sbjct: 181 VVAQMQRDPAKAMELKDVKPGQGL 204


>gi|56478185|ref|YP_159774.1| NADH dehydrogenase I, chain J [Aromatoleum aromaticum EbN1]
 gi|56314228|emb|CAI08873.1| NADH dehydrogenase I, chain J [Aromatoleum aromaticum EbN1]
          Length = 200

 Score =  177 bits (450), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 113/199 (56%), Gaps = 2/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY+ + + + +   V+T RNP+++   L+ +F +A G++LLL AEF+A++ ++
Sbjct: 1   MDFKTFVFYVLAVIMVFAGLRVITARNPVHAALFLVLSFFSAGGIWLLLAAEFLAVVLVM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI+++               IG+L      +V    +    A 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDRLRQGFWSYLPVGALIGVLLVVEMALVLGGRYFGLEAM 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            E        +N   +G++LYT Y YP E++  +LL++MI A+ L LR R+ ++  + S+
Sbjct: 121 PEPPAAQAGYSNTRELGRLLYTDYVYPFELASLLLLVAMIVAVTLTLRKRKGVRYLNPSE 180

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+     + + ++ + + K
Sbjct: 181 QISIKRGDRVELISMPAEK 199


>gi|187929284|ref|YP_001899771.1| NADH dehydrogenase subunit J [Ralstonia pickettii 12J]
 gi|187726174|gb|ACD27339.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ralstonia
           pickettii 12J]
          Length = 210

 Score =  177 bits (450), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 118/199 (59%), Gaps = 2/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY F+ + ++++  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFALVLVLAALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118
           VYVGAV+V FLF++MM+DIDIE            + F+G++      +V    FM     
Sbjct: 61  VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMAAFVGVVIILEMAVVLTKTFMGRVQP 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +     F G N + +GK++YT Y Y  E++G +LLL+++ A+ L  R R+D K Q++S 
Sbjct: 121 VQELPKGFTGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDTKAQNVSD 180

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+     + + +V + + K
Sbjct: 181 QIRVKRKDRVRLVSMPAEK 199


>gi|90417834|ref|ZP_01225746.1| NADH dehydrogenase I, J subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337506|gb|EAS51157.1| NADH dehydrogenase I, J subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 205

 Score =  177 bits (450), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 85/202 (42%), Positives = 129/202 (63%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++FFYLF+ +A+ S  +VV  RNP++SV  LI  FV AAGLFLL GAEF+A+I +VVY
Sbjct: 4   LQAVFFYLFALVAVGSGLMVVLARNPVHSVLFLILTFVAAAGLFLLAGAEFLALILIVVY 63

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV + FLF++MMLDID    +    +       IG++    +V A+    +  +  ++
Sbjct: 64  VGAVAILFLFVVMMLDIDFGRVKRDTLKYAPVGVIIGVVLLAELVIAATGNYYDPQMAVA 123

Query: 123 -----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
                  +   +N+E +G VLYT+Y    +++G IL ++M+GAIVL LRH+  +KRQ I 
Sbjct: 124 TSMPIPPLEVVSNIEALGSVLYTRYILFFQLAGLILFVAMVGAIVLTLRHKEGLKRQSIP 183

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           +Q+   P  ++ + KV+SGKGI
Sbjct: 184 QQVGRTPATAVEIRKVESGKGI 205


>gi|39936006|ref|NP_948282.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris CGA009]
 gi|192291661|ref|YP_001992266.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris TIE-1]
 gi|39649860|emb|CAE28382.1| NADH-ubiquinone dehydrogenase chain J [Rhodopseudomonas palustris
           CGA009]
 gi|192285410|gb|ACF01791.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodopseudomonas palustris TIE-1]
          Length = 212

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 85/202 (42%), Positives = 128/202 (63%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  LFFYL++ +AI ++ +VV  RNP++S   LI  FVNAAG+F+L+GAEF+AMI +V
Sbjct: 1   MSMPVLFFYLYAGVAIAAAVMVVVARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VYVGAV V FLF+IMMLD+D                 IG +    ++  +   V S    
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDYSQLREGFLEYLPFGLLIGFIFLAELLLLAGGWVISPTVT 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   S +    +N E +G VLYT+Y +  ++SG +LL++M+GAIVL LRH++ +KRQDI+
Sbjct: 121 KAVTSPIPTGVSNTEALGLVLYTRYIHYFQVSGMVLLVAMVGAIVLTLRHKKKVKRQDIA 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q   + + ++ +  VK+G+G+
Sbjct: 181 AQNARSKETAMAIRHVKTGQGL 202


>gi|189184496|ref|YP_001938281.1| NADH dehydrogenase subunit J [Orientia tsutsugamushi str. Ikeda]
 gi|189181267|dbj|BAG41047.1| NADH dehydrogenase I chain J [Orientia tsutsugamushi str. Ikeda]
          Length = 202

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 127/196 (64%), Gaps = 3/196 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           LFFYLFS +A++ S  V+T +NP+Y+V  LIF F N +GL +LLGAEF+A + ++VY GA
Sbjct: 2   LFFYLFSVLALLGSIGVITSKNPVYAVLWLIFVFCNTSGLLILLGAEFLAFLLVIVYAGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V + FLF++MML+I  +     K R  L      I++   I+  S  +V    G    + 
Sbjct: 62  VAILFLFVVMMLNIKSDNLVLVKTRTILNIPIYVIISFIFIIDLSIIIVM-GFGNYCPIH 120

Query: 126 FKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           ++ NN  ++ IG+VLYT+YA P ++SG ILL++MIG +VL +R R  +KRQD   Q+  N
Sbjct: 121 YEENNLDIKAIGRVLYTEYALPFQLSGIILLIAMIGCVVLTVRKRSGVKRQDHYSQINRN 180

Query: 184 PDNSIVMVKVKSGKGI 199
            ++SI +VKV+  KGI
Sbjct: 181 RNSSIQVVKVEVNKGI 196


>gi|167562186|ref|ZP_02355102.1| NADH dehydrogenase subunit J [Burkholderia oklahomensis EO147]
 gi|167569431|ref|ZP_02362305.1| NADH dehydrogenase subunit J [Burkholderia oklahomensis C6786]
          Length = 218

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 125/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     KR    +  +G     +I+  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVDVLRRDFKRFVPMATAVG----AIIIVETALILWRGYGA 116

Query: 121 LSRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +  V            N + IGKV+YT Y +  EI+G +LL+++I A+ L  +  +D K
Sbjct: 117 TASPVRDVAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ +S+Q++   ++ + +VK+++ K
Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201


>gi|319943357|ref|ZP_08017639.1| NADH-quinone oxidoreductase subunit J [Lautropia mirabilis ATCC
           51599]
 gi|319743172|gb|EFV95577.1| NADH-quinone oxidoreductase subunit J [Lautropia mirabilis ATCC
           51599]
          Length = 254

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/200 (37%), Positives = 130/200 (65%), Gaps = 9/200 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + S+ F+LF+ + + ++  V+T RNP++S   L+  FV++A ++LL+ AEF+A++ ++
Sbjct: 1   MDVISVLFFLFALVTVFAATRVITARNPVHSALFLVLTFVSSAAIWLLMKAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID++      + GF  S  +G+  A +IV   + ++++  G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDLD----NLRVGFWRSLPVGLFVAAIIVVELSLVLWAHFGG 116

Query: 120 ----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
               +L +     +N + +G++LYT Y YPLEI+G ILL++M+ AI L LR R+D K Q+
Sbjct: 117 VQEADLVQPAADYDNAKALGELLYTGYIYPLEIAGMILLVAMVAAIALTLRRRKDRKSQN 176

Query: 176 ISKQLESNPDNSIVMVKVKS 195
            S+Q+     + + +V + +
Sbjct: 177 PSQQVRVRAADRVRLVSMSA 196


>gi|217970165|ref|YP_002355399.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thauera sp.
           MZ1T]
 gi|217507492|gb|ACK54503.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thauera sp.
           MZ1T]
          Length = 201

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY  + + ++++  V+T RNP+++   L+  F NA GL+LLL AEF+A+  ++
Sbjct: 1   MEFKTFVFYFLAAIMVLAALRVITARNPVHAALFLVLTFFNAGGLWLLLQAEFLAVTLVM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI+++               +GIL     ++V   ++    A 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDRLREGFWSYLPVGALVGILMLVEMVMVLGGSYFGLEAM 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              + +    +N   +G+VLYT Y Y  E++  +LL++M+ A+ L LR R+ +K    S+
Sbjct: 121 PAPAPVAADYSNTRELGRVLYTDYVYAFELASLVLLVAMVSAVALTLRKRKGLKSIPPSE 180

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+    +  + +VK++S K
Sbjct: 181 QVAVRREGRVELVKMQSEK 199


>gi|82702229|ref|YP_411795.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosospira
           multiformis ATCC 25196]
 gi|82410294|gb|ABB74403.1| NADH dehydrogenase subunit J [Nitrosospira multiformis ATCC 25196]
          Length = 201

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY FS + + S+  V+T RNP++S   L+ AF  +AGL+LLL AEF+A+  ++
Sbjct: 1   MSFTDIIFYFFSAVLVASALGVITARNPVHSALLLVLAFFASAGLWLLLEAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VYVGAV+V FLF++MMLDI++        + F     +G++ +  +        F A   
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLARLREGFWKWFPFGLLLGLVMSIEMAMVLTGKQFGANEL 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              +      +N + +G+++YT+Y Y  E++  ILL++++ AI L LR R + K  D++K
Sbjct: 121 PAPAARAADYSNTKELGRLIYTEYVYAFELAAVILLVAIVAAIALTLRQRGESKSMDVAK 180

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+    ++ I +V + S K
Sbjct: 181 QVAVKREDRIRIVSMASEK 199


>gi|83951756|ref|ZP_00960488.1| NADH dehydrogenase subunit J [Roseovarius nubinhibens ISM]
 gi|83836762|gb|EAP76059.1| NADH dehydrogenase subunit J [Roseovarius nubinhibens ISM]
          Length = 202

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/202 (39%), Positives = 123/202 (60%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +L FYLF+   I+     V  RNP++SV  LI +F++AAGLF+LLGAEFVAM+ ++
Sbjct: 1   MTVFALAFYLFATCVIVGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLD+D    +    R    +  IG++       A     F+   E
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVLLMQFALAYGAWDFAEGAE 120

Query: 121 LSRLVFKGN---NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            +R     +   N   +G ++Y +Y    ++SG ILL++M+GAI L LRHR+D+KRQ++ 
Sbjct: 121 AARGAVTPDGVENTAALGLLIYDKYFLLFQLSGLILLVAMVGAIALTLRHRQDVKRQNVL 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ +  VK G+G+
Sbjct: 181 AQMYRDPAKAMELRDVKPGQGL 202


>gi|134283969|ref|ZP_01770665.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 305]
 gi|167893554|ref|ZP_02480956.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 7894]
 gi|167902000|ref|ZP_02489205.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei NCTC 13177]
 gi|167918269|ref|ZP_02505360.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei BCC215]
 gi|217420305|ref|ZP_03451811.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 576]
 gi|237811591|ref|YP_002896042.1| NADH dehydrogenase subunit j [Burkholderia pseudomallei MSHR346]
 gi|254181178|ref|ZP_04887775.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           1655]
 gi|134244758|gb|EBA44856.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 305]
 gi|184211716|gb|EDU08759.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           1655]
 gi|217397609|gb|EEC37625.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 576]
 gi|237502691|gb|ACQ95009.1| NADH dehydrogenase subunit j [Burkholderia pseudomallei MSHR346]
          Length = 218

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLD++I+V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDVNIDVLRRDFKRFVPMATAVG----AIIVVETALILWRGYGA 116

Query: 121 LSRLV--------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +  V            N + IGKV+YT Y +  EI+G +LL+++I A+ L  +  +D K
Sbjct: 117 TASPVRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ +S+Q++   ++ + +VK+ + K
Sbjct: 177 RQRVSEQVKVRREDRVRLVKMPAEK 201


>gi|74317169|ref|YP_314909.1| NADH dehydrogenase I subunit J [Thiobacillus denitrificans ATCC
           25259]
 gi|74056664|gb|AAZ97104.1| NADH dehydrogenase I chain J [Thiobacillus denitrificans ATCC
           25259]
          Length = 211

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 111/196 (56%), Gaps = 2/196 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            +  FY F+ + + +   V+T RNP+++   L+ AF  AAGL+LLL AEF+A+  ++VYV
Sbjct: 3   TTAIFYFFAAILVFAGLRVITARNPVHAALFLVLAFFTAAGLWLLLEAEFLAITLVLVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGEL 121
           GAV+V FLF++MMLDI+++            +  + IL      ++           G  
Sbjct: 63  GAVMVLFLFVVMMLDINLDQLREGFWNYLPLAGVVAILLVIEMALILGGRHFGLDVIGVP 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                  +N + +G+++YT Y Y  E++  ILL++++ AI L LR R+D K  D ++Q++
Sbjct: 123 PAQPADYSNTKELGRLIYTDYVYAFELAAVILLVAIVAAIALTLRRRKDTKYIDPAQQVK 182

Query: 182 SNPDNSIVMVKVKSGK 197
              ++ + ++K+ + K
Sbjct: 183 VKRNDRLRIIKMPAEK 198


>gi|91789107|ref|YP_550059.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Polaromonas
           sp. JS666]
 gi|91698332|gb|ABE45161.1| NADH dehydrogenase subunit J [Polaromonas sp. JS666]
          Length = 217

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 124/202 (61%), Gaps = 11/202 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY+F+ + + ++F V+T RNP+++   L+ AF  AA +++LL AEF+A+  ++
Sbjct: 1   MDAKTGLFYVFAAVLLFAAFRVITARNPVHAALYLVLAFFQAAAVWILLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---- 116
           VYVGAV+V FLF++MMLDI+I+      ++GF   F +      +I    ++++      
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDSV----RKGFWKHFPLAGTVGAIIALEMSYVLMGGFRE 116

Query: 117 ---AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              A     ++  + +N + +GK+LY++Y YPLE++  ILL++MI AI L LR R+D K 
Sbjct: 117 PPKAASAPGQIGAQVSNTKELGKLLYSEYLYPLEVAAVILLVAMIAAIALTLRQRKDTKY 176

Query: 174 QDISKQLESNPDNSIVMVKVKS 195
            + S Q+     + + +VK+KS
Sbjct: 177 INPSDQIRVKRGDRVSLVKMKS 198


>gi|121998535|ref|YP_001003322.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Halorhodospira halophila SL1]
 gi|121589940|gb|ABM62520.1| NADH dehydrogenase subunit J [Halorhodospira halophila SL1]
          Length = 203

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/194 (38%), Positives = 124/194 (63%), Gaps = 1/194 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+F+ + + ++ +V++VRNP+++   L+ AF NAA +++L GAEF+ +  ++VY
Sbjct: 1   MEQVIFYIFAGVLLFAATMVISVRNPVHAALFLVLAFFNAAVIWVLAGAEFLGIALVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV+V FLF++MMLDI+I  + E   +   +G+    ++AA+L+    +       G +
Sbjct: 61  VGAVMVLFLFVLMMLDINIAPMREGFTRYLPVGALVAVLMAAQLVAVIVSERADLISGTI 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                  NN++ IG VLYT Y YP EI+  ILLL+++ AI L LR R    +QD+S+QL 
Sbjct: 121 PEPAADVNNIQAIGGVLYTVYVYPFEIAAVILLLAIVAAITLTLRRREGTHKQDVSRQLS 180

Query: 182 SNPDNSIVMVKVKS 195
              D+ + +V++KS
Sbjct: 181 VKKDDRLRLVRMKS 194


>gi|53718856|ref|YP_107842.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei K96243]
 gi|53725806|ref|YP_103425.1| NADH dehydrogenase subunit J [Burkholderia mallei ATCC 23344]
 gi|67642183|ref|ZP_00440943.1| NADH dehydrogenase subunit J [Burkholderia mallei GB8 horse 4]
 gi|76809961|ref|YP_332853.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1710b]
 gi|121601517|ref|YP_992478.1| NADH dehydrogenase subunit J [Burkholderia mallei SAVP1]
 gi|124383891|ref|YP_001026719.1| NADH dehydrogenase subunit J [Burkholderia mallei NCTC 10229]
 gi|126440562|ref|YP_001058347.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 668]
 gi|126449514|ref|YP_001079996.1| NADH dehydrogenase subunit J [Burkholderia mallei NCTC 10247]
 gi|126453874|ref|YP_001065586.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106a]
 gi|167000359|ref|ZP_02266177.1| NADH dehydrogenase subunit J [Burkholderia mallei PRL-20]
 gi|167718854|ref|ZP_02402090.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei DM98]
 gi|167737862|ref|ZP_02410636.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 14]
 gi|167815045|ref|ZP_02446725.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 91]
 gi|167823461|ref|ZP_02454932.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 9]
 gi|167845013|ref|ZP_02470521.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei B7210]
 gi|167910236|ref|ZP_02497327.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 112]
 gi|226195411|ref|ZP_03791000.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei Pakistan 9]
 gi|242315732|ref|ZP_04814748.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106b]
 gi|254175409|ref|ZP_04882069.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 10399]
 gi|254190541|ref|ZP_04897048.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194999|ref|ZP_04901428.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           S13]
 gi|254202101|ref|ZP_04908464.1| NADH dehydrogenase I, J subunit [Burkholderia mallei FMH]
 gi|254207431|ref|ZP_04913781.1| NADH dehydrogenase I, J subunit [Burkholderia mallei JHU]
 gi|254258350|ref|ZP_04949404.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           1710a]
 gi|254298542|ref|ZP_04965994.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           406e]
 gi|254359853|ref|ZP_04976123.1| NADH dehydrogenase I, J subunit [Burkholderia mallei 2002721280]
 gi|52209270|emb|CAH35215.1| NADH dehydrogenase I chain J [Burkholderia pseudomallei K96243]
 gi|52429229|gb|AAU49822.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 23344]
 gi|76579414|gb|ABA48889.1| NADH dehydrogenase I chain J [Burkholderia pseudomallei 1710b]
 gi|121230327|gb|ABM52845.1| NADH dehydrogenase I, J subunit [Burkholderia mallei SAVP1]
 gi|124291911|gb|ABN01180.1| NADH dehydrogenase I, J subunit [Burkholderia mallei NCTC 10229]
 gi|126220055|gb|ABN83561.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           668]
 gi|126227516|gb|ABN91056.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 1106a]
 gi|126242384|gb|ABO05477.1| NADH dehydrogenase I, J subunit [Burkholderia mallei NCTC 10247]
 gi|147746348|gb|EDK53425.1| NADH dehydrogenase I, J subunit [Burkholderia mallei FMH]
 gi|147751325|gb|EDK58392.1| NADH dehydrogenase I, J subunit [Burkholderia mallei JHU]
 gi|148029093|gb|EDK86998.1| NADH dehydrogenase I, J subunit [Burkholderia mallei 2002721280]
 gi|157808368|gb|EDO85538.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           406e]
 gi|157938216|gb|EDO93886.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696453|gb|EDP86423.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 10399]
 gi|169651747|gb|EDS84440.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           S13]
 gi|225932613|gb|EEH28611.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei Pakistan 9]
 gi|238523279|gb|EEP86718.1| NADH dehydrogenase subunit J [Burkholderia mallei GB8 horse 4]
 gi|242138971|gb|EES25373.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106b]
 gi|243063693|gb|EES45879.1| NADH dehydrogenase subunit J [Burkholderia mallei PRL-20]
 gi|254217039|gb|EET06423.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei
           1710a]
          Length = 218

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLD++I+V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDVNIDVLRRDFKRFVPMATAVG----AIIVVETALILWRGYGA 116

Query: 121 LSRLV--------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +  V            N + IGKV+YT Y +  EI+G +LL+++I A+ L  +  +D K
Sbjct: 117 TASPVRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ +S+Q++   ++ + +VK+ + K
Sbjct: 177 RQRVSEQVKVRREDRVRLVKMPADK 201


>gi|254467844|ref|ZP_05081250.1| NADH-ubiquinone oxidoreductase chain 6 [beta proteobacterium KB13]
 gi|207086654|gb|EDZ63937.1| NADH-ubiquinone oxidoreductase chain 6 [beta proteobacterium KB13]
          Length = 198

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 121/197 (61%), Gaps = 1/197 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+     FYLFS + +++S  V+T  NP+YS  SL+ AF +AAG++LLL AEF+A+  ++
Sbjct: 1   MIFTDYLFYLFSGILVLASLRVITANNPVYSALSLVLAFFSAAGIWLLLHAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+IE    R    F  +  I +L    I        FS+  +
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIEALRQRFWSYFPVALLIALLFIFEIYLVVTDKFFSS-SD 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            + +  + +N  +IG VLYT Y  P +++  ILL+++I AIVL +  ++  K  D   Q+
Sbjct: 120 PAGIPLEKSNTHSIGSVLYTDYLLPFQVAAVILLVAIISAIVLTMYGKKSHKAIDPKDQI 179

Query: 181 ESNPDNSIVMVKVKSGK 197
           + N ++ + +VK+KS K
Sbjct: 180 KVNRNDRVRVVKMKSEK 196


>gi|329850719|ref|ZP_08265564.1| NADH-quinone oxidoreductase subunit J [Asticcacaulis biprosthecum
           C19]
 gi|328841034|gb|EGF90605.1| NADH-quinone oxidoreductase subunit J [Asticcacaulis biprosthecum
           C19]
          Length = 204

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/202 (46%), Positives = 130/202 (64%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FYL + + +++  LVVT RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +V
Sbjct: 1   MTLMAIAFYLMAAVTLVAGLLVVTARNPVHSVLYLILAFFSAAGLFVLLGAEFLAMLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D I++ +        G+   GILA ELI          A  
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFIKLRQGFANYLAPGAVVAGILAFELIFVGWAVAGRGAAA 120

Query: 120 ELSRLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
             +         N++ IG  LYT YAY  E +GF+LL++MIGAIVL LRHR  +KRQDI 
Sbjct: 121 GNAPQAARPDATNIQTIGLELYTTYAYVFEAAGFVLLVAMIGAIVLTLRHRTYVKRQDIY 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           KQ+     +++ +V  K+G+GI
Sbjct: 181 KQVTRRRKDAVAVVPAKTGEGI 202


>gi|209518506|ref|ZP_03267327.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. H160]
 gi|209501051|gb|EEA01086.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. H160]
          Length = 230

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 122/207 (58%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+     L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVACALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLD++++V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDVNLDVLRKDFKRFVPMASAVG----AIIVVETALILWHGYGA 116

Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +  +             +N   IGKV+YT Y +  EI+G ILL+++I AI L   H++D
Sbjct: 117 TTAALHDTASAAAGMGDWSNTRVIGKVIYTNYIFAFEIAGLILLVAIIAAIALTTSHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ++S Q+     + + +VK+ S K
Sbjct: 177 SKRQNVSAQVRVRAQDRVRVVKMPSEK 203


>gi|256821524|ref|YP_003145487.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kangiella
           koreensis DSM 16069]
 gi|256795063|gb|ACV25719.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kangiella
           koreensis DSM 16069]
          Length = 226

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 112/195 (57%), Gaps = 2/195 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FY+F+ + I+S+  VVTVRN + +V  L+  F +AA L++LL AEF+A+  ++
Sbjct: 1   MTAEQIVFYIFATLTIVSALGVVTVRNSVQAVLCLVLTFFSAAVLWMLLEAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLD+D         R       + I     +       VF  E  
Sbjct: 61  VYVGAVMVLFLFVVMMLDVDFASLNQGFTRYVPLGILVAIGLLIGLYWVLRGEVFGLEAM 120

Query: 121 LSRL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              +    + +NVE +G++LYT Y Y  EI+G ILL++++ AI L  R RR+ + Q +  
Sbjct: 121 PEPVKHGAEHSNVEVLGRLLYTDYFYAFEIAGVILLVAIVAAISLTFRGRRERRGQSVPS 180

Query: 179 QLESNPDNSIVMVKV 193
           Q  ++ D  + +VK+
Sbjct: 181 QHRASKDERLHIVKM 195


>gi|295676046|ref|YP_003604570.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1002]
 gi|295435889|gb|ADG15059.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           sp. CCGE1002]
          Length = 230

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+     L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVACALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDVLRKDFKRFVPMASAVG----AIIVIETALILWHGYGA 116

Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +  +             +N   IGKV+YT Y +  EI+G ILL+++I AI L   H++D
Sbjct: 117 TATALHDTASAAAGMGDWSNTRLIGKVIYTNYIFAFEIAGLILLVAIIAAIALTTSHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ++S Q++    + + +VK+ S K
Sbjct: 177 SKRQNVSAQVKVRAQDRVRVVKMPSEK 203


>gi|115278617|ref|YP_762486.1| NADH dehydrogenase subunit 6 [Tripsacum dactyloides]
 gi|114432108|gb|ABI74657.1| NADH dehydrogenase subunit 6 [Tripsacum dactyloides]
          Length = 333

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 13/189 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM +I I        R    S  IG I   E+     N  +       +  
Sbjct: 61  IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR--DIK 172
                     V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +       +K
Sbjct: 121 SLGYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTIHMVK 180

Query: 173 RQDISKQLE 181
           RQD+ ++  
Sbjct: 181 RQDVFRRNA 189


>gi|121604339|ref|YP_981668.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Polaromonas
           naphthalenivorans CJ2]
 gi|120593308|gb|ABM36747.1| NADH dehydrogenase subunit J [Polaromonas naphthalenivorans CJ2]
          Length = 215

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 125/204 (61%), Gaps = 13/204 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY+F+ + + ++F V+T RNP+++   L+ AF  AA +++LL AEF+A+  ++
Sbjct: 1   MDAKTGLFYVFAAVLLFAAFRVITARNPVHAALFLVLAFFQAAAVWILLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++      ++GF   F +      +I    ++++     E
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDSV----RKGFWKHFPLAGTVGAIIALEMSYVLMGGFRE 116

Query: 121 LSR---------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
             +         L  + +N + +GKVLY+QY YPLEI+  ILL+++I AI L LR R+D 
Sbjct: 117 PPQGASMPVSGELAAQVSNTKELGKVLYSQYIYPLEIAAVILLVAIIAAIALTLRERKDS 176

Query: 172 KRQDISKQLESNPDNSIVMVKVKS 195
           KR + + Q+     + + +VK+KS
Sbjct: 177 KRTNPADQVRVKSQDRVRLVKMKS 200


>gi|221638939|ref|YP_002525201.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides KD131]
 gi|221159720|gb|ACM00700.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131]
          Length = 199

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/199 (37%), Positives = 124/199 (62%), Gaps = 5/199 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY F+  A+ ++ +VVT RN +++V  LI  F+++AG+F+LLGAEFVAM+ ++VYVGA
Sbjct: 1   MAFYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLVIVYVGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRL 124
           V V FLF++MMLD+D E  +    R    +  +GI +  +L +    ++       + + 
Sbjct: 61  VAVLFLFVVMMLDVDFEALKSEVVRYMPVAALMGIVILLQLSMGIGAWVTADGAPAMRQA 120

Query: 125 VFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           V        N   +G ++Y +Y Y  + +G ILL++M+GAI+L LR RRD+KRQ++  Q+
Sbjct: 121 VTPDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQNVLAQM 180

Query: 181 ESNPDNSIVMVKVKSGKGI 199
             +P  ++ +  VK G+G+
Sbjct: 181 WRDPAKAMELKDVKPGQGL 199


>gi|254455980|ref|ZP_05069409.1| NADH dehydrogenase i chain j [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082982|gb|EDZ60408.1| NADH dehydrogenase i chain j [Candidatus Pelagibacter sp. HTCC7211]
          Length = 210

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 124/206 (60%), Gaps = 7/206 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++FFYLFS +AI+S+ +V   +N ++SVF LI  F++ + LF+++GAEF+ MI L+
Sbjct: 1   MIAHAIFFYLFSLIAIVSAIMVTASKNTVHSVFFLILDFISISCLFIMIGAEFLGMIMLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MML++  +  +        G   +G++ + LI      ++   + +
Sbjct: 61  VYVGAVAVLFLFVVMMLNVAQQKNQWFASEESSGHIPVGLIISTLIFFELIIVIGGWKYK 120

Query: 121 L-------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                   S   +  +N  +IG++LYT Y +  +ISG ILL++M+GAIVL  R R  +K 
Sbjct: 121 PDLFDLNNSMTNYSLSNTHSIGQILYTDYIHIFQISGMILLVAMVGAIVLTFRKREGVKT 180

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q   KQ+       + +++V+S KG+
Sbjct: 181 QSYLKQISRERSEGVKIIEVESNKGV 206


>gi|294677070|ref|YP_003577685.1| NADH-quinone oxidoreductase subunit J [Rhodobacter capsulatus SB
           1003]
 gi|1709410|sp|P50975|NUOJ_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|3282575|gb|AAC25001.1| NUOJ [Rhodobacter capsulatus]
 gi|294475890|gb|ADE85278.1| NADH-quinone oxidoreductase, J subunit [Rhodobacter capsulatus SB
           1003]
 gi|1586524|prf||2204231E NADH ubiquinone oxidoreductase
          Length = 202

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 80/202 (39%), Positives = 124/202 (61%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    FYLF+ +A+++  +VV  +NP+++V  LI  F++AAGLF+L+GAEFVAM+ ++
Sbjct: 1   MTVFVFAFYLFAVVAVVAGLMVVLSKNPVHAVLWLILTFLSAAGLFVLMGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID      +  +   +G     ++ A+L      +    A  
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFAALRGQLVRYAPVGGLIALVMLAQLATGLMVWNTADAAN 120

Query: 120 ELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            L          N   +G +LY +Y Y  + +G +LL++MIGAI+L LRHR DIKRQ++ 
Sbjct: 121 GLRAAPAPEGVENTAALGMILYDRYLYLFQGAGLVLLVAMIGAILLTLRHRTDIKRQNVL 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ MV VK G+G+
Sbjct: 181 AQMHRDPAKALEMVDVKPGQGL 202


>gi|221234956|ref|YP_002517392.1| NADH dehydrogenase subunit J [Caulobacter crescentus NA1000]
 gi|220964128|gb|ACL95484.1| NADH-quinone oxidoreductase chain J [Caulobacter crescentus NA1000]
          Length = 217

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 87/203 (42%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYL +F+ I +  LVV+ RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +V
Sbjct: 13  MPVQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLVV 72

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLD+D         +       I ++ A  +V     +  +    
Sbjct: 73  VYVGAVAVLFLFVVMMLDVDFAELRQGFVQYLPFGGLIALVIAIEMVMVVAAVATNGAAA 132

Query: 121 LSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            + L         N E IG+VLYT Y +  +++G +LL++MIGAIVL LRH+  +KRQDI
Sbjct: 133 KNPLPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKPGVKRQDI 192

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            KQ+   P   + +V++K G+GI
Sbjct: 193 GKQVARTPKTGMELVQIKPGEGI 215


>gi|71083591|ref|YP_266310.1| NADH dehydrogenase I subunit J [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91761988|ref|ZP_01263953.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71062704|gb|AAZ21707.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717790|gb|EAS84440.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 210

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 121/206 (58%), Gaps = 7/206 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++FFY FSF+AI+S+ +V   +N ++SVF LI  F++ + LF+++GAEF+ MI L+
Sbjct: 1   MLAHAIFFYTFSFIAIVSAIMVTVSKNTVHSVFFLILDFISISCLFIMIGAEFLGMIMLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MML++  +  +    +       IG++ + +I      ++   + +
Sbjct: 61  VYVGAVAVLFLFVVMMLNVAQQKNQWFSAQESSKHIPIGLIVSVIIFFELIIVIGGWKYK 120

Query: 121 LS-------RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                     +     N  +IG VLYT Y +  ++SG ILL++MIGAIVL  R R  +KR
Sbjct: 121 PDLVSAMSLTIDKNITNTHSIGYVLYTDYIHVFQLSGMILLVAMIGAIVLTFRQRSGVKR 180

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q    Q+     + + ++ V++ KG+
Sbjct: 181 QSYFSQISRERSDGVELIDVENNKGV 206


>gi|299530751|ref|ZP_07044166.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas
           testosteroni S44]
 gi|298721267|gb|EFI62209.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas
           testosteroni S44]
          Length = 226

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 17/210 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F VVT RNP+++V +LI AF  AA ++LLL AEF+ +  ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY+GAV+V FLF++MMLDI I+      +RGF   F    L   LI      ++    G+
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRID----SMRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGD 116

Query: 121 L-------------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +             +      +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR 
Sbjct: 117 VEDAKAVGATMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRK 176

Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           R+D K  + + Q+     + I +VKV S K
Sbjct: 177 RKDSKAMNPADQIRVRASDRIKLVKVDSTK 206


>gi|264677207|ref|YP_003277113.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas
           testosteroni CNB-2]
 gi|262207719|gb|ACY31817.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas
           testosteroni CNB-2]
          Length = 226

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 17/210 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F VVT RNP+++V +LI AF  AA ++LLL AEF+ +  ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY+GAV+V FLF++MMLDI I+      +RGF   F    L   LI      ++    G+
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRID----SMRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGD 116

Query: 121 L-------------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +             +      +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR 
Sbjct: 117 VEDAKAVGATMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRK 176

Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           R+D K  + + Q+     + I +VKV S K
Sbjct: 177 RKDSKAMNPADQIRVRASDRIKLVKVDSTK 206


>gi|221068603|ref|ZP_03544708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Comamonas
           testosteroni KF-1]
 gi|220713626|gb|EED68994.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Comamonas
           testosteroni KF-1]
          Length = 226

 Score =  174 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 123/206 (59%), Gaps = 9/206 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F VVT RNP+++V +LI AF  AA ++LLL AEF+ +  ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNF------ 112
           VY+GAV+V FLF++MMLDI I+       + F  +  IG+L A    +V    F      
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRIDAMRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGDVEDA 120

Query: 113 -MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
             V +     +      +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR R+D 
Sbjct: 121 KAVGTTMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRKRKDS 180

Query: 172 KRQDISKQLESNPDNSIVMVKVKSGK 197
           K  + + Q+     + I +VKV S K
Sbjct: 181 KAMNPADQIRVRASDRIKLVKVDSTK 206


>gi|145589225|ref|YP_001155822.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047631|gb|ABP34258.1| NADH dehydrogenase subunit J [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 215

 Score =  174 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 121/196 (61%), Gaps = 2/196 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            + ++FFY F+ + +IS+  V+T RNP+++   L+ AF  A+GL++LL AEF+++  ++V
Sbjct: 7   TLFAVFFYGFAGLLVISALRVITARNPVHAALFLVLAFFCASGLWMLLKAEFLSLALILV 66

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEG 119
           YVGAV+V FLF++MMLD+DIE      K+    +F +G  I+    IV   +F+      
Sbjct: 67  YVGAVMVLFLFVVMMLDLDIEHLRRDFKKFLPVAFLMGTVIVLELSIVIIRSFIGTDTPV 126

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           +        NN + +G +++  Y Y  EI+G ILL+++I A+ L LR+R+D K Q+I +Q
Sbjct: 127 QPMPEEMMANNTQALGMLIFVDYVYAFEIAGVILLVAIIAAVALTLRNRKDSKSQNIHEQ 186

Query: 180 LESNPDNSIVMVKVKS 195
           +     + + +VK+ S
Sbjct: 187 VNVVAADRMRIVKMDS 202


>gi|34496405|ref|NP_900620.1| NADH-ubiquinone oxidoreductase, chain J [Chromobacterium violaceum
           ATCC 12472]
 gi|34102258|gb|AAQ58624.1| NADH-ubiquinone oxidoreductase, chain J [Chromobacterium violaceum
           ATCC 12472]
          Length = 214

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 121/205 (59%), Gaps = 10/205 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY+ S + + +   VVT +NP+++   L+ AF  +AG +LL+ +EF+A+  ++
Sbjct: 1   MNLTTVIFYVLSAILVFAGLRVVTAKNPVHAALYLVLAFFTSAGHWLLMESEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+IE    + + GF  +  +      ++V     ++ S +  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIE----KLREGFWKNLPVAATVGAIMVFEMALILVSPQAS 116

Query: 121 LS------RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           LS       L    +NV+ +G  LYT Y  P EI+  +LLL+MI AI L +R R+D K  
Sbjct: 117 LSQYKAAAPLAADFSNVKMLGSQLYTTYLLPFEIAAVVLLLAMIAAIGLTMRTRKDSKVI 176

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           D + Q++   ++ + +VK+ + K +
Sbjct: 177 DPAVQVKVRREDRVRIVKMDAVKKV 201


>gi|83942658|ref|ZP_00955119.1| NADH dehydrogenase I, J subunit [Sulfitobacter sp. EE-36]
 gi|83953897|ref|ZP_00962618.1| NADH dehydrogenase subunit J [Sulfitobacter sp. NAS-14.1]
 gi|83841842|gb|EAP81011.1| NADH dehydrogenase subunit J [Sulfitobacter sp. NAS-14.1]
 gi|83846751|gb|EAP84627.1| NADH dehydrogenase I, J subunit [Sulfitobacter sp. EE-36]
          Length = 200

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+   I      V  RNP++SV  LI +F++AAGLF+LL AEFVAM+ ++VY
Sbjct: 1   MSVFAFYLFAISVIAGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLNAEFVAMLLIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLD+D    +    R    +  IG++     V A      ++  E  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGAWDANSAAEGL 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               +  + +N   +G +LY QY    ++SG ILL++MIGAIVL LRHR D+KRQ++  Q
Sbjct: 121 RTQVITDEVHNTAALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRADVKRQNVVDQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPKLAMKLNDVKPGQGL 200


>gi|114569914|ref|YP_756594.1| NADH dehydrogenase (quinone) [Maricaulis maris MCS10]
 gi|114340376|gb|ABI65656.1| NADH dehydrogenase subunit J [Maricaulis maris MCS10]
          Length = 203

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 125/200 (62%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +L F+ FS +AI+S+ +VV  RNP+ SV  LI AF +AAGLF+LLGAEF+AM+ +VVY
Sbjct: 2   LANLAFWAFSGVAILSALMVVIARNPVRSVLFLILAFFSAAGLFVLLGAEFLAMLLIVVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD+D  E+ +       LG     ILA EL +    +        L
Sbjct: 62  VGAVAVLFLFVVMMLDVDFTELKQGFLSYLPLGGLVAIILAVELGMIGMTWQASEQAMAL 121

Query: 122 SRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                     NVE +G V+Y QY Y  + +G +LL++MIGAIVL LRH+  ++RQ +S Q
Sbjct: 122 RDAAIPDGLTNVEALGLVIYDQYVYFFQAAGLVLLVAMIGAIVLTLRHKPGVRRQSVSAQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +  +++ M  +K G+GI
Sbjct: 182 VARDRKDAVTMHDIKPGQGI 201


>gi|254486921|ref|ZP_05100126.1| NADH-quinone oxidoreductase chain j [Roseobacter sp. GAI101]
 gi|214043790|gb|EEB84428.1| NADH-quinone oxidoreductase chain j [Roseobacter sp. GAI101]
          Length = 200

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 116/200 (58%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+   I      V  RNP++SV  LI AF++AAGLF++L AEFVAM+ ++VY
Sbjct: 1   MSVFAFYLFATCLIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVMLNAEFVAMLLIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLD+D    +    R    +  IG++     V A      +   E  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLIILMQFVMAFGAWDANVAAEGL 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               +     N   +G +LY +Y    ++SG ILL++MIGAIVL LRHR D+KRQD+  Q
Sbjct: 121 RAHVVTDDVQNTAALGLILYDEYFLLFQLSGLILLVAMIGAIVLTLRHRPDVKRQDVVAQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MMRDPKLAMKLNDVKPGQGL 200


>gi|91977346|ref|YP_570005.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisB5]
 gi|91683802|gb|ABE40104.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5]
          Length = 212

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 85/202 (42%), Positives = 126/202 (62%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  LFFYL++  AI ++ +VV  RNP++S   LI  FVNAAG+F+L+GAEF+AMI +V
Sbjct: 1   MSMPVLFFYLYAGAAIAAAVMVVVARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSA 117
           VYVGAV V FLF+IMMLD+D                 IG +    ++  +   V      
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFSRLREGFLEYLPFGLLIGAIFLAELLLLAGGWVITPTIT 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   + +    +N E +G VLYT+Y +  +ISG ILL++MIGAIVL LRH++ +KRQ+I+
Sbjct: 121 KTITAPIPTNVSNTEALGLVLYTRYIHYFQISGVILLVAMIGAIVLTLRHKKSVKRQNIN 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           +Q     + ++ + +VK G+G+
Sbjct: 181 EQNARTKEAAMAIRQVKPGQGL 202


>gi|299066342|emb|CBJ37526.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum
           CMR15]
          Length = 210

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 115/196 (58%), Gaps = 2/196 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MM+D+DIE              F+G  I+    +V    FM  S  
Sbjct: 61  VYVGAVMVLFLFVVMMIDVDIEHLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQP 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +       G N + +GK++YT Y Y  E++G +LLL+++ A+ L  R R+D K Q+++ 
Sbjct: 121 VQELPKALSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQNVAD 180

Query: 179 QLESNPDNSIVMVKVK 194
           Q+     + + ++ + 
Sbjct: 181 QVRVQRKDRVRLISMP 196


>gi|83718554|ref|YP_441623.1| NADH dehydrogenase subunit J [Burkholderia thailandensis E264]
 gi|167580431|ref|ZP_02373305.1| NADH dehydrogenase subunit J [Burkholderia thailandensis TXDOH]
 gi|167618540|ref|ZP_02387171.1| NADH dehydrogenase subunit J [Burkholderia thailandensis Bt4]
 gi|257139681|ref|ZP_05587943.1| NADH dehydrogenase subunit J [Burkholderia thailandensis E264]
 gi|83652379|gb|ABC36442.1| NADH dehydrogenase I, J subunit [Burkholderia thailandensis E264]
          Length = 218

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDVLRRDFKRFVPMATVVG----AIIVVETALILWRGYGA 116

Query: 121 LSRLV--------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               V            N + IGKV+YT Y +  EI+G +LL+++I A+ L  +  +D K
Sbjct: 117 TGSPVRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ +S+Q++   ++ + +VK+++ K
Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201


>gi|84502625|ref|ZP_01000744.1| NADH dehydrogenase subunit J [Oceanicola batsensis HTCC2597]
 gi|84389020|gb|EAQ01818.1| NADH dehydrogenase subunit J [Oceanicola batsensis HTCC2597]
          Length = 201

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 122/201 (60%), Gaps = 2/201 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +L FYLF+F  +      V  RNP++SV  LI AF+++AGLF+LLGAEFVAM+ ++
Sbjct: 1   MTAAALAFYLFAFSTLAGGLFTVIARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLDID    +    +    +  IG++       A      S    
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFAALKAEMAKYMPLALLIGVILLMQFGLAYGSWEASDMAA 120

Query: 121 LSRLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +RL    +G N   +G ++Y QY    +++G ILL++MIGAIVL LRHR DIKRQ++  
Sbjct: 121 SNRLAAMPEGENTAGLGLLIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRTDIKRQNVLA 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+  +P  S+ +  VK G+G+
Sbjct: 181 QMWRDPAKSMELKDVKPGQGL 201


>gi|254496131|ref|ZP_05109030.1| NADH dehydrogenase I, J subunit [Legionella drancourtii LLAP12]
 gi|254354672|gb|EET13308.1| NADH dehydrogenase I, J subunit [Legionella drancourtii LLAP12]
          Length = 219

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 20/211 (9%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY+F+ + + S+ +V+T  NP+  V  L+  F  ++ L++L  AEF+A+I ++VYVGAV
Sbjct: 9   IFYVFAALTVGSALMVITQNNPVRCVLFLVLTFFTSSVLWILAEAEFLALILVLVYVGAV 68

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----------- 115
           +  FLF++MML+IDIE      KR       +  L   L++ A+    F           
Sbjct: 69  MTLFLFVVMMLNIDIESMRGHFKRYLPFGLILVALLTGLLMVATPAGTFKDNVERQQNAG 128

Query: 116 ---------SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                    ++E +    + + +N E +G VLYT Y    E++  +LL++++ AI L+ R
Sbjct: 129 QPILIQQGRTSELKTEPQLIEMSNTEALGMVLYTDYFLAFELAAVLLLVAIVSAITLVHR 188

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
             R  KRQDI +Q+ +  D  + +V +K+ K
Sbjct: 189 GPRQSKRQDIKQQIMTRRDERVKLVSMKAEK 219


>gi|288958980|ref|YP_003449321.1| NADH dehydrogenase I chain J [Azospirillum sp. B510]
 gi|288911288|dbj|BAI72777.1| NADH dehydrogenase I chain J [Azospirillum sp. B510]
          Length = 204

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 132/204 (64%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++Q + FY+F+ + + S  +V++ RNP++SV  LI AF  AAGL +L+GAEF+AMI ++
Sbjct: 1   MIVQGIAFYVFAALLVASGVMVISARNPVHSVLYLILAFFQAAGLCVLMGAEFIAMILVI 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VF 115
           VYVGAV V FLF++MMLDI+  E+ +   +   LG+    IL AEL      ++    V 
Sbjct: 61  VYVGAVAVLFLFVVMMLDINFRELRQGAMEALPLGALVGLILLAELAAVLGGWIVAPNVA 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +  G  +  + +  N   +G+++YTQY Y  + SG ILL++MIGAIVL LRHR  +++Q+
Sbjct: 121 ATIGAPTPALDQVTNTHALGRLIYTQYVYLFQASGIILLIAMIGAIVLTLRHRAGVRKQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           +  Q+    ++ + + KV +G+G+
Sbjct: 181 VGVQIARRREDVVAIRKVTTGEGV 204


>gi|297538947|ref|YP_003674716.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera
           sp. 301]
 gi|297258294|gb|ADI30139.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera
           sp. 301]
          Length = 217

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 113/195 (57%), Gaps = 2/195 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            Q + FY  + + + ++  V+T RNP+Y+   L+ AF  AAG++LLL AEF+A+  ++VY
Sbjct: 8   FQDIVFYTLAAVLLYAAISVITTRNPVYAALYLVLAFFTAAGIWLLLEAEFLAIALVLVY 67

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV+V FLF++MMLDI+++            +  +G L A  +V       F A+  ++
Sbjct: 68  VGAVMVLFLFVVMMLDINLDKLREGFWNALPVALPVGGLMAVEMVMIVGVRNFGADKVIA 127

Query: 123 RL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                   +N   +G+VLYT Y  P E++  +LL++++ AI L LR R++ K  D SKQ+
Sbjct: 128 PPAHAADYSNTAELGRVLYTDYLLPFELASVVLLVAIVAAIALTLRDRKESKSVDPSKQV 187

Query: 181 ESNPDNSIVMVKVKS 195
                + I ++K+ +
Sbjct: 188 LVKKADRIRILKMDA 202


>gi|94496471|ref|ZP_01303048.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas
           sp. SKA58]
 gi|94424217|gb|EAT09241.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas
           sp. SKA58]
          Length = 203

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 114/200 (57%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + FYLF+ + + S  L +  RNP++SV  LI AF NAAGL +LLGAEF+AM+ ++VY
Sbjct: 2   IHVVAFYLFATIVVCSGALTILSRNPVHSVLWLILAFFNAAGLMILLGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EG 119
           VGAV V FLF++MMLDID                 + ++    IV               
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAELRAGFVSYLPFGLLVALVLLAEIVLGIGLWSVGPIELAQ 121

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               +  + +N++ IG +LYT+Y +  E +G +LL++MIGAIVL  R R  ++ Q+I++Q
Sbjct: 122 RAGPVNPELSNIQAIGALLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRPQNIARQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
            +  P +++  V    G+G+
Sbjct: 182 NQRRPQDAVRNVNQPVGQGV 201


>gi|83858405|ref|ZP_00951927.1| NADH dehydrogenase subunit J [Oceanicaulis alexandrii HTCC2633]
 gi|83853228|gb|EAP91080.1| NADH dehydrogenase subunit J [Oceanicaulis alexandrii HTCC2633]
          Length = 202

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 120/200 (60%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +  FY+ S  A++S+ +VV  +NP+ +V  LI AF +AAGLF+LLGAEF+AMI ++VY
Sbjct: 2   LSAAAFYILSATAVLSALMVVIAKNPVRAVLFLILAFFSAAGLFVLLGAEFLAMILVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121
           VGAV V FLF++MMLDID    +            + +  A ++       V +      
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAQLKEGFISHAPLGGVVALALAGILAMTGLSWVSADSASAA 121

Query: 122 --SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             S       NV  +G ++Y +Y    +I+G +LL++MIGAIVL LRHR  +KRQD+  Q
Sbjct: 122 LQSPTPDDMTNVAALGALIYDRYVLFFQIAGLVLLVAMIGAIVLTLRHRDGVKRQDMHAQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +    ++S+ +V +KSG+GI
Sbjct: 182 VNRKREDSVEIVDIKSGEGI 201


>gi|300691034|ref|YP_003752029.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum
           PSI07]
 gi|299078094|emb|CBJ50737.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum
           PSI07]
          Length = 210

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 114/195 (58%), Gaps = 2/195 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MM+D+DIE              F+G  I+    +V    FM  S  
Sbjct: 61  VYVGAVMVLFLFVVMMIDVDIENLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQP 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +       G N + +GK++YT Y Y  E++G +LLL+++ A+ L  R R+D K Q ++ 
Sbjct: 121 VQELPKTLSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQKVAD 180

Query: 179 QLESNPDNSIVMVKV 193
           Q+     + + +V +
Sbjct: 181 QIRVQRKDRVRLVSM 195


>gi|225627308|ref|ZP_03785345.1| NADH-quinone oxidoreductase subunit J [Brucella ceti str. Cudo]
 gi|237815247|ref|ZP_04594245.1| NADH-quinone oxidoreductase subunit J [Brucella abortus str. 2308
           A]
 gi|225617313|gb|EEH14358.1| NADH-quinone oxidoreductase subunit J [Brucella ceti str. Cudo]
 gi|237790084|gb|EEP64294.1| NADH-quinone oxidoreductase subunit J [Brucella abortus str. 2308
           A]
          Length = 215

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/190 (43%), Positives = 121/190 (63%), Gaps = 4/190 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF+
Sbjct: 26  IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 85

Query: 74  IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---N 129
           +MMLD+D  E+     +   +G+    IL  ELI   ++ M     G+ +  +       
Sbjct: 86  VMMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVATRT 145

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
           N   +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ I  Q+   P+ +I 
Sbjct: 146 NTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETAIE 205

Query: 190 MVKVKSGKGI 199
           + KV++GKGI
Sbjct: 206 IRKVETGKGI 215


>gi|254419970|ref|ZP_05033694.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Brevundimonas sp. BAL3]
 gi|196186147|gb|EDX81123.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Brevundimonas sp. BAL3]
          Length = 208

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/201 (44%), Positives = 135/201 (67%), Gaps = 4/201 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + FYL +  A++S  LVVT RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +VVY
Sbjct: 2   LQGIAFYLLAATAVVSGLLVVTARNPVHSVLWLILAFFSAAGLFVLLGAEFLAMLLVVVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD+D +++ E   +   +G+    +L AE+I+ +S  +   A   L
Sbjct: 62  VGAVAVLFLFVVMMLDVDFLKLREGYARYLPIGAVIAAVLLAEMILVSSAVIQGGATAGL 121

Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +         +NVE IG+VLYT Y Y  + +G +LL++MIGAI L LRH+  IKRQ+I+ 
Sbjct: 122 AGPGAPDPDMSNVEAIGRVLYTDYIYFFQAAGIVLLIAMIGAITLTLRHKPHIKRQNITD 181

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+  +   ++ +  V++G+G+
Sbjct: 182 QVNRSAAKAMEVKSVQTGQGV 202


>gi|300023444|ref|YP_003756055.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525265|gb|ADJ23734.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 216

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 132/202 (65%), Gaps = 6/202 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++ FFYLF+ +A+ S  +V+  RNP+++V  L+ AF NAAGLFLLLGAEF+AM+ ++VYV
Sbjct: 3   EAGFFYLFAVLAVASGAMVILARNPVHAVLFLVLAFFNAAGLFLLLGAEFLAMLLVIVYV 62

Query: 64  GAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS--NFMVFSAEGE 120
           GAV V FLF++MMLD+D  E+     K   +G+   G++ AEL+   S   F +      
Sbjct: 63  GAVSVIFLFVVMMLDVDFAELKAGFIKNAKIGAIVGGVVLAELVALFSFRGFSIAPTVNV 122

Query: 121 LSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            + +   G    N   +G++LYT+Y Y  + SG ILL++MIGAIVL L+HR ++KRQ I+
Sbjct: 123 AAPMPAAGSTLTNTAALGQILYTKYVYLFQASGMILLVAMIGAIVLTLKHRTNVKRQSIA 182

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  +P  ++ +VKV +G  +
Sbjct: 183 AQVSRDPAKTLEVVKVPTGGSV 204


>gi|319779207|ref|YP_004130120.1| NADH-ubiquinone oxidoreductase chain J [Taylorella equigenitalis
           MCE9]
 gi|317109231|gb|ADU91977.1| NADH-ubiquinone oxidoreductase chain J [Taylorella equigenitalis
           MCE9]
          Length = 263

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 114/199 (57%), Gaps = 7/199 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FYL + + + +   VV  R+P+  V  LI AF NA+ L++L+GAEF+ ++ ++
Sbjct: 1   MTFTDILFYLLAIVLLYAGVRVVLARHPVVGVLHLILAFFNASMLWILIGAEFLGLLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGAV+V FLF++MM+D+  E      ++ F     IG++   ++V    F++ SA  +
Sbjct: 61  IYVGAVMVLFLFVVMMVDVVPET----LRKDFRTYLPIGLVVGGVMVSEIAFILGSAYLD 116

Query: 121 LSRL---VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            S         NN   +G  +Y++Y+YP+++   ILL+ MI AI L LR R++ K   +S
Sbjct: 117 SSSPKSWPDTYNNTLALGIEMYSKYSYPIQVGALILLVGMIAAIALTLRERKNRKYVLVS 176

Query: 178 KQLESNPDNSIVMVKVKSG 196
            QL+    + + +V + S 
Sbjct: 177 DQLKVEAKDRVRLVSLPSE 195


>gi|291498625|gb|ADE08099.1| nad6-1 [Triticum aestivum]
 gi|291498626|gb|ADE08100.1| nad6-2 [Triticum aestivum]
          Length = 305

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 11/188 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI+ VV++G
Sbjct: 18  TMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHIG 77

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSR 123
           A+ V FLF++MM +I I        R    S  IG++   E+     N  +       + 
Sbjct: 78  AIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNT 137

Query: 124 L----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KR
Sbjct: 138 TSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKR 197

Query: 174 QDISKQLE 181
           QD+ ++  
Sbjct: 198 QDVFRRNA 205


>gi|328543696|ref|YP_004303805.1| NADH dehydrogenase I chain J transmembrane protein [polymorphum
           gilvum SL003B-26A1]
 gi|326413440|gb|ADZ70503.1| Probable NADH dehydrogenase I chain J transmembrane protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 204

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/204 (45%), Positives = 144/204 (70%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++++LFFYLF+ + + S+F+V+  RNP++SV  LI AFVN+AGLF+LLGAE++AM+ +V
Sbjct: 1   MILKALFFYLFAGVTVASAFMVIASRNPVHSVLFLILAFVNSAGLFVLLGAEYLAMLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VF 115
           VYVGAV V FLF++MMLD+D +E+ +   +   +G+    IL  EL++    +     V 
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGALVGVILMVELLLVVGAWAIAPEVI 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   +    + + +NVE IG+VLYT+Y +  +++G +LL++M+GAIVL LRH+  +KRQD
Sbjct: 121 AHGSQPIPPLDQMSNVEAIGQVLYTKYVFFFQVAGLVLLVAMVGAIVLTLRHKEGVKRQD 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I  Q+  N  ++I + KV+SGKGI
Sbjct: 181 IPTQVARNKKSAIEIRKVESGKGI 204


>gi|294011318|ref|YP_003544778.1| NADH dehydrogenase I chain J [Sphingobium japonicum UT26S]
 gi|292674648|dbj|BAI96166.1| NADH dehydrogenase I chain J [Sphingobium japonicum UT26S]
          Length = 203

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/200 (37%), Positives = 115/200 (57%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + FYLF+ + + S  L +  RNP++SV  LI AF NAAGL +LLGAEF+AM+ ++VY
Sbjct: 2   IHVIAFYLFAILVVSSGALTILSRNPVHSVLWLIMAFFNAAGLMVLLGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EG 119
           VGAV V FLF++MMLDID                 I ++    IV               
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAELRAGFVDYLPFGLLIALVLLAEIVLGIGLWSAGPIELAQ 121

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             + +  + +N++ IG +LYT+Y +  E +G +LL++MIGAIVL  R R  ++ Q+++KQ
Sbjct: 122 RAAPVNPELSNIQAIGALLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRGQNVAKQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
               P++++  V    G+G+
Sbjct: 182 NRRRPEDAVRNVNQPVGQGV 201


>gi|148285164|ref|YP_001249254.1| NADH dehydrogenase subunit J [Orientia tsutsugamushi str. Boryong]
 gi|146740603|emb|CAM81257.1| NADH dehydrogenase I chain J [Orientia tsutsugamushi str. Boryong]
          Length = 202

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/196 (42%), Positives = 124/196 (63%), Gaps = 3/196 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           LFFYLFS +A++ S  V+T +NP+Y+   LIF F N +GL +LLGAEF+A + ++VY GA
Sbjct: 2   LFFYLFSVLALLGSIGVITSKNPVYAALWLIFVFCNTSGLLILLGAEFLAFLLVIVYAGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V + FLF++MML+I  +     K R  L      I+A   I+  S  +V         + 
Sbjct: 62  VAILFLFVVMMLNIKSDNLVLVKTRTILNIPIYVIIAFIFIIDLSIIIVM-CFSNYCPIH 120

Query: 126 FKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           ++ NN  ++ IG+VLYT+YA   ++SG ILL++MIG +VL +R R  +KRQD   Q+  N
Sbjct: 121 YEENNLDIKAIGRVLYTEYALQFQLSGIILLIAMIGCVVLTVRKRSGVKRQDHYSQINRN 180

Query: 184 PDNSIVMVKVKSGKGI 199
            ++SI +VKV+  KGI
Sbjct: 181 RNSSIQVVKVEVNKGI 196


>gi|17546772|ref|NP_520174.1| NADH dehydrogenase subunit J [Ralstonia solanacearum GMI1000]
 gi|17429072|emb|CAD15760.1| probable transmembrane nadh dehydrogenaseI(chain j) oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 210

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 115/195 (58%), Gaps = 2/195 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS + ++S+  V+T +NP+++   L+ +F  AA +++LL AEF+A+  ++
Sbjct: 1   MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MM+D+DIE              F+G  I+    +V    FM  S  
Sbjct: 61  VYVGAVMVLFLFVVMMIDVDIEHLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQP 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +       G N + +GK++YT Y Y  E++G +LLL+++ A+ L  R R+D K Q+++ 
Sbjct: 121 VQELPKALSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQNVAD 180

Query: 179 QLESNPDNSIVMVKV 193
           Q+     + + +V +
Sbjct: 181 QIRVQRKDRVRLVSM 195


>gi|300311104|ref|YP_003775196.1| transmembrane NADH dehydrogenase I subunit J [Herbaspirillum
           seropedicae SmR1]
 gi|300073889|gb|ADJ63288.1| transmembrane NADH dehydrogenase I (Chain J) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 120/196 (61%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++ FY+F+ + +I++  V+T RNP+++   L+ +F +AAG+++LL AEF+A++ ++
Sbjct: 1   MEFKTVLFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++         F  +  IG++    +        ++ E +
Sbjct: 61  VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQ 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           +          + +GK+++T+Y Y  EI+  ILL++++ A+ L LR R+D K  D +K +
Sbjct: 121 VPAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAV 180

Query: 181 ESNPDNSIVMVKVKSG 196
           +    + + +V +K+ 
Sbjct: 181 KVKASDRVRLVSMKAE 196


>gi|292493659|ref|YP_003529098.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           halophilus Nc4]
 gi|291582254|gb|ADE16711.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           halophilus Nc4]
          Length = 201

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 113/197 (57%), Gaps = 3/197 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY F+ + + ++ +V+TVRNP+ +   L+ AF  +A ++LLL AEF+A++ ++VY
Sbjct: 1   MEKILFYSFAAILLFAATMVITVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +GAV+V FLF++MMLDI++        R     F +  L A  ++       F  E   S
Sbjct: 61  IGAVMVLFLFVVMMLDINLAPLREGFARYLPVGFLVAALIALEMMAVLGAENFGLEQFTS 120

Query: 123 RLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                   +N + +G +LYT Y YP E++  ILL++++ AI L LR R   K QD  +Q+
Sbjct: 121 PPPQGPDYSNTKELGNLLYTVYVYPFELASVILLVAIVAAIALTLRRRT-SKAQDPVQQI 179

Query: 181 ESNPDNSIVMVKVKSGK 197
                + + +VK+ + K
Sbjct: 180 RVRRQDRVRLVKMAAEK 196


>gi|30249728|ref|NP_841798.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas
           europaea ATCC 19718]
 gi|30180765|emb|CAD85679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas
           europaea ATCC 19718]
          Length = 201

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 119/199 (59%), Gaps = 2/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q   FY  + + +I++  V+T+RNP++S   L+ AFV ++GL+LLL AEF+A++ ++
Sbjct: 1   MNLQDFVFYSLASVVVIAALGVITLRNPVHSALLLVLAFVTSSGLWLLLEAEFLAIVLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++       + F     + ++    I        F  E  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDRMREGFWKWFPFGAILALIMTGEIGIVLMSKQFGPENI 120

Query: 121 LSRL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              +      +N + +G++LYT Y Y  E+S  ILL++M+ AI + LR+R D K  ++SK
Sbjct: 121 QIPVSKSVDYSNTKELGQLLYTDYVYAFELSAVILLVAMVAAIAITLRYRTDKKSSNVSK 180

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+ ++ +  + ++ + + +
Sbjct: 181 QVAASREKRLKVISIPAER 199


>gi|239831695|ref|ZP_04680024.1| NADH-quinone oxidoreductase subunit J [Ochrobactrum intermedium LMG
           3301]
 gi|239823962|gb|EEQ95530.1| NADH-quinone oxidoreductase subunit J [Ochrobactrum intermedium LMG
           3301]
          Length = 215

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/190 (43%), Positives = 123/190 (64%), Gaps = 4/190 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF+
Sbjct: 26  IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 85

Query: 74  IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS---RLVFKGN 129
           +MMLD+D  E+     +   +G+    IL  ELI   ++ M     G+ +     + + +
Sbjct: 86  VMMLDVDFSELKRGALQYAPVGALVGLILLGELIFVFASNMFAPKLGQGAVPIPNIAERS 145

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
           N   +G +LYT + +  +++G +LL++MIGAIVL LRH+ ++KRQ I  Q+   P+ +I 
Sbjct: 146 NTAALGDILYTDFVFYFQVAGLVLLVAMIGAIVLTLRHKPNVKRQSIPAQVARTPETAIE 205

Query: 190 MVKVKSGKGI 199
           + +V++GKGI
Sbjct: 206 IKQVETGKGI 215


>gi|302879332|ref|YP_003847896.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gallionella
           capsiferriformans ES-2]
 gi|302582121|gb|ADL56132.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gallionella
           capsiferriformans ES-2]
          Length = 200

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 114/196 (58%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FYLF+ + +++   VV  RNP+++   L+ AF +AAG+++LL AEF+A+  ++
Sbjct: 1   MSFFDVVFYLFATITVLAGVGVVVARNPVHAALFLVLAFCSAAGIWMLLEAEFLAITLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI++        R F     +  L    +V        +   +
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLVKLREGFWRWFPFGALLAGLMVFEMVWVLGSRQTADVSK 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                   +N + +G+++YTQY YP EI+  ILL++M+ AI L LR R  +K Q+++ Q+
Sbjct: 121 AIVHAADYSNTKELGRLIYTQYVYPFEIAAVILLVAMVAAIALTLRRRAGVKSQNVADQV 180

Query: 181 ESNPDNSIVMVKVKSG 196
           +    + + +V +KS 
Sbjct: 181 KVKKADRLRIVSMKSE 196


>gi|118590028|ref|ZP_01547432.1| NADH dehydrogenase subunit J [Stappia aggregata IAM 12614]
 gi|118437525|gb|EAV44162.1| NADH dehydrogenase subunit J [Stappia aggregata IAM 12614]
          Length = 229

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 90/204 (44%), Positives = 141/204 (69%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++++LFFYLF+ + + S+F+V+  RNP+ SV  LI AFVN+AGLF+LLGAE++A++ +V
Sbjct: 26  MILKALFFYLFAGVTLASAFMVIASRNPVTSVLFLILAFVNSAGLFILLGAEYLALLLVV 85

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE- 118
           VYVGAV V FLF++MMLD+D +E+ +   +   +G+    IL  EL++    +++     
Sbjct: 86  VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGALVGVILLVELLMGLGAWVIAPGVL 145

Query: 119 ---GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
               E    +   +N++ IG VLYT+Y Y  +++G +LL++MIGAIVL LRH+ ++KRQ 
Sbjct: 146 GHGAEPMPALSDVSNIQAIGSVLYTKYIYFFQVAGLVLLVAMIGAIVLTLRHKPNVKRQS 205

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I  Q+  N + SI + KV++GKGI
Sbjct: 206 IPDQVARNRETSIEVRKVETGKGI 229


>gi|261856541|ref|YP_003263824.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Halothiobacillus neapolitanus c2]
 gi|261837010|gb|ACX96777.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Halothiobacillus neapolitanus c2]
          Length = 219

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 115/201 (57%), Gaps = 2/201 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    FY+F+  A+IS+  VVTV+NP+++   L+  F   +  ++L+ AEF+ ++ L+
Sbjct: 1   MTLYQFLFYVFASSAVISAIRVVTVKNPVHAALFLVLTFFTTSLTWILMEAEFLGIVLLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI++        R      F+ ++      ++  S+    +  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLAPLREGFVRNLPVGVFVALVMVIELGLIVGSHAFGLANY 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              +      +N   +G VLYT+Y YP EI+ FILL++++ AI L  R R  +  Q+I +
Sbjct: 121 PAPTAAAAGTSNTLALGSVLYTEYVYPFEIAAFILLVAIVAAISLAHRKREGVLYQNIDQ 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q++ N D+ + MVK+ S   +
Sbjct: 181 QVKVNRDDRVRMVKMVSSTPV 201


>gi|16126184|ref|NP_420748.1| NADH dehydrogenase subunit J [Caulobacter crescentus CB15]
 gi|13423398|gb|AAK23916.1| NADH dehydrogenase I, J subunit [Caulobacter crescentus CB15]
          Length = 205

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 87/203 (42%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYL +F+ I +  LVV+ RNP++SV  LI AF +AAGLF+LLGAEF+AM+ +V
Sbjct: 1   MPVQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MMLD+D         +       I ++ A  +V     +  +    
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELRQGFVQYLPFGGLIALVIAIEMVMVVAAVATNGAAA 120

Query: 121 LSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            + L         N E IG+VLYT Y +  +++G +LL++MIGAIVL LRH+  +KRQDI
Sbjct: 121 KNPLPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKPGVKRQDI 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            KQ+   P   + +V++K G+GI
Sbjct: 181 GKQVARTPKTGMELVQIKPGEGI 203


>gi|83311877|ref|YP_422141.1| NADH:ubiquinone oxidoreductase subunit 6 [Magnetospirillum
           magneticum AMB-1]
 gi|82946718|dbj|BAE51582.1| NADH:ubiquinone oxidoreductase subunit 6 [Magnetospirillum
           magneticum AMB-1]
          Length = 202

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 128/202 (63%), Gaps = 6/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
             +L FY+F+ +A+ S  +V++ RNP++SV  LI AF NAAGLFLLLGAEF+AM+ ++VY
Sbjct: 2   FTALIFYMFAAIAVASGVMVISSRNPVHSVLWLILAFFNAAGLFLLLGAEFLAMVLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLDI++   +    +       IG++    ++       F+ + E  
Sbjct: 62  VGAVAVLFLFVVMMLDINMVEMKEGFLQYLPTGALIGLVLLVELLAMFGGWAFAPDVEAM 121

Query: 121 ---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +  + + +N   +GK++YT Y Y  + SG +LL++MIG I+L  R R  +++Q I+
Sbjct: 122 IKAPTPTLDQASNTVALGKLIYTNYVYLFQASGLVLLVAMIGTILLTHRKRTGVRKQVIA 181

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           +Q+  +  +S+ + KV+SG+GI
Sbjct: 182 EQVNRSR-DSVELKKVQSGRGI 202


>gi|148555901|ref|YP_001263483.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas
           wittichii RW1]
 gi|148501091|gb|ABQ69345.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas
           wittichii RW1]
          Length = 203

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 124/200 (62%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++ FYLF+ + + S  L +  RNP++SV  LI AF NAAGL +L+GAEF+AM+ ++VY
Sbjct: 2   IQTIAFYLFAALVVASGTLTILARNPVHSVLWLILAFFNAAGLMILVGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--G 119
           VGAV V FLF++MMLDID  E+     +    G   + +LAAE+I     +     +   
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAELRAGFAQYLPFGILLVLVLAAEMIFAIGAWKAGGIDMGA 121

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            ++    +  N+E IG ++YT+Y Y  E +G ILL++++GAIVL  R R  +K Q+++ Q
Sbjct: 122 RIAPTPSEVPNIEAIGTLIYTRYLYIFEGAGLILLVALVGAIVLTHRTRGGVKTQNVTAQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
               P+++   VK   G+G+
Sbjct: 182 NMRRPEDATRNVKPAVGQGV 201


>gi|319405689|emb|CBI79312.1| NADH dehydrogenase I chain J [Bartonella sp. AR 15-3]
          Length = 206

 Score =  170 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 93/202 (46%), Positives = 130/202 (64%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +   FFY+F+F+ +IS+ +VVT RNP++SV  LI  F NAA LFLL GAEF+ +I LVVY
Sbjct: 5   LAVAFFYIFAFIMLISAVIVVTARNPVHSVLFLILVFFNAAVLFLLAGAEFLGLILLVVY 64

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSF--FIGILAAELIVCASNFMVFSA-- 117
           VGAV V FLF++MMLD+D  E+     K   +GSF   I  +    +  ++ F + S   
Sbjct: 65  VGAVAVLFLFVVMMLDVDFAELKSGALKYAPIGSFIGIIIAIELIFVFISNGFSLVSGVH 124

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
             +    + +  N + +G +LYT Y +  +ISG ILL++MIGAIVL LRHR  IKRQ I+
Sbjct: 125 ITQPMPDLAQRTNTQALGDILYTDYVFYFQISGIILLVAMIGAIVLTLRHRSGIKRQSIA 184

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+    +N+I + KV+SGKGI
Sbjct: 185 AQVARTAENAIEIKKVESGKGI 206


>gi|171463535|ref|YP_001797648.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193073|gb|ACB44034.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 215

 Score =  170 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 123/196 (62%), Gaps = 2/196 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            + ++FFY F+ + IIS+  V+T RNP+++   L+ AF  A+GL++LL AEF+++  ++V
Sbjct: 7   TLFAVFFYGFAGLLIISALRVITARNPVHAALFLVLAFFCASGLWMLLKAEFLSLALILV 66

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEG 119
           YVGAV+V FLF++MMLD+D+E      K+    +F +G  I+    IV   +F+  +A  
Sbjct: 67  YVGAVMVLFLFVVMMLDLDLEHLRRDFKKFLPVAFLMGAVIVLELSIVIIRSFIGTNAPV 126

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           +        NN + +G +++  YAY  E++G ILL+++I A+ L LR+R+D K Q+I +Q
Sbjct: 127 QPMPEEVMANNTQALGMLIFVDYAYAFEVAGVILLVAIIAAVALTLRNRKDSKSQNIHEQ 186

Query: 180 LESNPDNSIVMVKVKS 195
           +       + +VK+ S
Sbjct: 187 VNVVAAERMRIVKMGS 202


>gi|148255904|ref|YP_001240489.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. BTAi1]
 gi|146408077|gb|ABQ36583.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. BTAi1]
          Length = 212

 Score =  170 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 90/202 (44%), Positives = 137/202 (67%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +V+  +NP++SV  LI AFVNA+GLF+L+GAEF+AMI +V
Sbjct: 1   MILPALFFYLFAAVCVASAVMVIVSKNPVHSVLYLILAFVNASGLFVLMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSA 117
           VYVGAV V FLF+IMMLD+D  E+ E   +   +G    GI   EL++  S +++   + 
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFTELREGFLQYMPIGLVIGGIFLFELLLTVSYWVINPTTP 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   + +     N E +G VLYT+Y +  ++SG ILL++MIGAIVL LRH+  +KRQDI+
Sbjct: 121 KAITAAIPTNVTNTEALGLVLYTKYIHYFQLSGMILLVAMIGAIVLTLRHKVSVKRQDIN 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q    P+ ++ + KV  G+G+
Sbjct: 181 VQNARTPEMAMAVRKVAVGQGL 202


>gi|222110095|ref|YP_002552359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           ebreus TPSY]
 gi|221729539|gb|ACM32359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           ebreus TPSY]
          Length = 221

 Score =  170 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 122/205 (59%), Gaps = 8/205 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F V+T RNP+++V  LI AF  AAG++ LL AEF+A+  ++
Sbjct: 1   MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAGVWFLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VY+GAV+V FLF++MMLDI I+       + F  + FIG L A  +           E  
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRIDTVRRGFWKHFPLAAFIGALVAFEMAAVLMTGFRGIEEP 120

Query: 119 ------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                    +  V   +N + +GK+LYT+Y YP+E++  ILL++MI AI L LR R+D K
Sbjct: 121 KAVEVLVNAAGQVVPYSNTKALGKLLYTEYLYPVEVAAVILLVAMIAAIALTLRQRKDSK 180

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
             D S+Q+     + +VMV++   +
Sbjct: 181 AIDPSEQVRVRARDRLVMVQLPVTQ 205


>gi|307293261|ref|ZP_07573107.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobium
           chlorophenolicum L-1]
 gi|306881327|gb|EFN12543.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobium
           chlorophenolicum L-1]
          Length = 203

 Score =  170 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  L FYLF+ + + S  L +  RNP++SV  LI AF NAAGL +LLGAEF+AM+ ++VY
Sbjct: 2   IHVLAFYLFAILVVSSGALTILSRNPVHSVLWLIMAFFNAAGLMVLLGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EG 119
           VGAV V FLF++MMLDID                 I  +    IV               
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAELRAGFVNYLPFGLLIAFVLLAEIVLGIGLWSAGPIELAQ 121

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             + +  + +N++ IG +LYT+Y +  E +G +LL++MIGAIVL  R R  ++ Q+++KQ
Sbjct: 122 RAAPVNPELSNIQAIGGLLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRGQNVAKQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
               P +++  V    G+G+
Sbjct: 182 NRRRPQDAVRNVNQPVGQGV 201


>gi|312796892|ref|YP_004029814.1| NADH-quinone oxidoreductase chain J [Burkholderia rhizoxinica HKI
           454]
 gi|312168667|emb|CBW75670.1| NADH-quinone oxidoreductase chain J (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 265

 Score =  170 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 123/210 (58%), Gaps = 17/210 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ +  +S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 36  MEFTTVLFYIFALLMTVSGLKVITARNPVSSALFLVLAFFNAAAIWMLLEAEFLAILLVL 95

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     +R    +  +G     +IV  +  +++   G 
Sbjct: 96  VYVGAVMVLFLFVVMMLDINLDVLRRDFRRFVPVATIVG----AIIVIETALILWHGYGA 151

Query: 121 LSRLVFKG-------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               V                +N   IG+++Y+ Y +  E++G +LL++++ A+ L +R 
Sbjct: 152 TVSPVHDAVQATQAAGAGGALSNTRMIGRIIYSDYIFAFEVAGLVLLVAIVAALALTIRD 211

Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
            +D+KRQ +S+Q+    ++ + +V++ + K
Sbjct: 212 GKDVKRQRVSEQVRVRREDRVRLVRMAAEK 241


>gi|319761771|ref|YP_004125708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Alicycliphilus denitrificans BC]
 gi|330826551|ref|YP_004389854.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Alicycliphilus denitrificans K601]
 gi|317116332|gb|ADU98820.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Alicycliphilus denitrificans BC]
 gi|329311923|gb|AEB86338.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Alicycliphilus denitrificans K601]
          Length = 222

 Score =  170 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 125/205 (60%), Gaps = 8/205 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++ FFYLFS + + ++F V+T RNP+++V  LI AF  AAG++LLL AEF+A+  ++
Sbjct: 1   MDVKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAGVWLLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113
           VY+GAV+V FLF++MMLDI  +       + F  + FIG L A  +              
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRFDTVRRGFWKHFPLAAFIGALVAFEMAAVLMTGFRGVEEP 120

Query: 114 -VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
               A    +  V   +N + +G+++YT+Y YP+EI+  ILL++MI AI L LR R+D+K
Sbjct: 121 KAVPALVNAAGQVLPYSNTQALGRLMYTEYLYPVEIAAVILLVAMISAIALTLRQRKDVK 180

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
             D + QL +   + +V++K+ + +
Sbjct: 181 AGDATAQLRARASDRLVVLKMPTTQ 205


>gi|323138154|ref|ZP_08073227.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocystis
           sp. ATCC 49242]
 gi|322396616|gb|EFX99144.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocystis
           sp. ATCC 49242]
          Length = 200

 Score =  170 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 120/200 (60%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++FFY+F+ + I S+ +V+  RNP++SV  LI AF N AGLFLL GAEF+AMI +VVY
Sbjct: 1   MAAVFFYIFATIMIASACVVIFARNPVHSVLFLILAFCNGAGLFLLAGAEFLAMILIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE---LIVCASNFMVFSAEG 119
           VGAV V FLF++MMLD+D    +    +       +G++      ++         ++  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKQGFNKYLPVGAAVGVVVLAELGMVAIGWQSAPSASSA 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             + +V   +N   +G+VLYT+Y    + S  +LL +MIGAIVL L H+ ++KRQ I++Q
Sbjct: 121 AATPIVANVSNTAALGQVLYTKYVIFFQASALVLLTAMIGAIVLTLHHKPNVKRQKIAEQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
              N DN I + KV    G+
Sbjct: 181 NARNRDNVIEIKKVPFRTGV 200


>gi|171058194|ref|YP_001790543.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leptothrix
           cholodnii SP-6]
 gi|170775639|gb|ACB33778.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leptothrix
           cholodnii SP-6]
          Length = 216

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 118/196 (60%), Gaps = 1/196 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +  FY+FS + + ++F V+T R+P+++   L+ AF  A+ +++LL AEF+A+  ++
Sbjct: 1   MDTTTALFYVFSAVLLFAAFRVITARSPVHAALYLVLAFFTASCVWMLLQAEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLDI+++V        F  +  +G I+A E+ V            
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVDVLRQGFWSHFPVAATVGVIIALEMAVVLLRGFNLPIAK 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            +        N + +G  LYT Y YPLEI+  ILL+++I AI L LR R+D+K Q+ ++Q
Sbjct: 121 AMPGAAEGVPNTKLLGIELYTDYLYPLEIAAVILLVAIIAAIALTLRRRKDVKGQNPAEQ 180

Query: 180 LESNPDNSIVMVKVKS 195
           +++   + + +VK+  
Sbjct: 181 VKAKKADRLRIVKMDP 196


>gi|115278547|ref|YP_762337.1| NADH dehydrogenase subunit 6 [Sorghum bicolor]
 gi|114309668|gb|ABI60885.1| NADH dehydrogenase subunit 6 [Sorghum bicolor]
          Length = 271

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM +I I        R    S  IG++   E+     N  +     + +  
Sbjct: 61  IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLGYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
           D+ ++   +   +I+     S K +
Sbjct: 181 DVFRRNALDFRRTIMRRPRASTKTV 205


>gi|220934171|ref|YP_002513070.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995481|gb|ACL72083.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 197

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 116/198 (58%), Gaps = 6/198 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY FS + + ++  ++TVRNP+++   L+  F  +A L+++L AEF+ ++ ++
Sbjct: 1   MNFEAFLFYFFSVILVGAAVAMITVRNPVHAALFLVLTFFTSAALWIMLEAEFLGIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDI++     R + GF+    +GI+ A  +V     ++      
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLA----RMREGFIRFLPVGIVVAVAMVSVMTLVIVRHFHM 116

Query: 120 -ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
               R     NN E +G++LYT+Y YP EI+  ILL++++ AI L +R R   K  D ++
Sbjct: 117 EAPERAGADYNNTEALGQILYTEYVYPFEIAAVILLVAIVAAIALTMRRRPGTKAIDPAQ 176

Query: 179 QLESNPDNSIVMVKVKSG 196
           Q+       + MV +KS 
Sbjct: 177 QVRITRKGRVRMVDMKSE 194


>gi|87200305|ref|YP_497562.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135986|gb|ABD26728.1| NADH dehydrogenase subunit J [Novosphingobium aromaticivorans DSM
           12444]
          Length = 205

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q   FYLF+ + I S  + +  RNP++SV  LI AF NAAGL +L GAEF+AM+ ++VY
Sbjct: 2   IQVFAFYLFATLCIFSGAVTILARNPVHSVLWLILAFFNAAGLMVLAGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-----LAAELIVCASNFMVFSA 117
           VGAV V FLF++MMLDID         + F     + +     L   L+V  S  +    
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAELRAGFIKNFPLGMALAVVLFVELFVGLVVRGSGAVALGK 121

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               +      +N+E+IG +LY++Y +  E +G +LL++MIGAIVL  R R D + Q++S
Sbjct: 122 ADGSAMQAAGASNIESIGALLYSRYLFLFEAAGIVLLVAMIGAIVLTHRQRTDTRGQNVS 181

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           KQ+   P+++ V ++ + GKG+
Sbjct: 182 KQVARRPEDATVNLQPEVGKGV 203


>gi|153871401|ref|ZP_02000582.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Beggiatoa
           sp. PS]
 gi|152072135|gb|EDN69420.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Beggiatoa
           sp. PS]
          Length = 195

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/194 (36%), Positives = 110/194 (56%), Gaps = 2/194 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FYLF+ + I ++  V+TV+NP+++   L+ AF ++A ++LLL AEF+A+  ++VY
Sbjct: 1   MIKFIFYLFALILIFAASRVITVKNPVHAALFLVLAFFSSAAIWLLLQAEFLAIALILVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV+V FLF++MMLDI+         R    +  +G L    +V            E++
Sbjct: 61  VGAVMVLFLFVVMMLDINFTQLREGFVRHLPIAGIVGALILLEMVLVVGTWHQVPIPEIA 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                  N E +G+VLYT+Y YP EI+  ILL++MI AI L LR RR  K Q   +Q+  
Sbjct: 121 ADALP--NTEALGQVLYTEYVYPFEIAAVILLVAMIAAIALTLRPRRQTKTQKPEQQVNV 178

Query: 183 NPDNSIVMVKVKSG 196
                + +VK+ + 
Sbjct: 179 RRSERVRLVKMPAE 192


>gi|17987432|ref|NP_540066.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 1 str. 16M]
 gi|17983124|gb|AAL52330.1| NADH-quinone oxidoreductase chain j [Brucella melitensis bv. 1 str.
           16M]
          Length = 189

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/189 (43%), Positives = 120/189 (63%), Gaps = 4/189 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF++
Sbjct: 1   MIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVV 60

Query: 75  MMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---NN 130
           MMLD+D  E+     +   +G+    IL  ELI   ++ M     G+ +  +       N
Sbjct: 61  MMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVATRTN 120

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190
              +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ I  Q+   P+ +I +
Sbjct: 121 TAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETAIEI 180

Query: 191 VKVKSGKGI 199
            KV++GKGI
Sbjct: 181 RKVETGKGI 189


>gi|262277292|ref|ZP_06055085.1| NADH-quinone oxidoreductase, j subunit [alpha proteobacterium
           HIMB114]
 gi|262224395|gb|EEY74854.1| NADH-quinone oxidoreductase, j subunit [alpha proteobacterium
           HIMB114]
          Length = 206

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 128/202 (63%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  +L FYLFSF+AI SS  V++ +N +++VF LI  FV+ + LF+++GAE++ M+TL+
Sbjct: 1   MLAHALVFYLFSFIAISSSLAVISSKNTVHAVFFLILDFVSISCLFIMMGAEYLGMLTLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL---GSFFIGILAAELIVCASNFMVFSA 117
           VYVGAV V FLF++MML+++ +                  + I+   +++    +     
Sbjct: 61  VYVGAVAVLFLFVVMMLNVNFKDLRTGFLSYLPFGLLIGIVIIIELGMMIGTWKYKDSFI 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +    ++  K +N E +G VLYT + +  +ISG ILL++MIGAI+L  R + ++KRQDI+
Sbjct: 121 KTSEIQISSKVSNTEALGNVLYTDFIHYFQISGIILLVAMIGAILLTFRQKENLKRQDIT 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           KQ+    D+ +++ +V+S KG+
Sbjct: 181 KQVSRERDDGVLLEEVESFKGV 202


>gi|330813991|ref|YP_004358230.1| NADH-ubiquinone oxidoreductase chain J [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487086|gb|AEA81491.1| NADH-ubiquinone oxidoreductase chain J [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 205

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/201 (36%), Positives = 122/201 (60%), Gaps = 2/201 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  S+ FY FSF+ I SS +V+  +N +++VF LI  FV+ + LF+++GAEF+ M+TL+
Sbjct: 1   MLAHSIIFYFFSFITIASSLMVIASKNTVHAVFFLILDFVSISSLFIMMGAEFLGMLTLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV V FLF++MM++++    +            IG++    +        +  +  
Sbjct: 61  VYVGAVAVLFLFVVMMINVNFSELKSGFLEYIPFGLLIGLVILLELGMMIATWKYKPDFV 120

Query: 121 LSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            S  +      N E++G V+YT Y +  ++SGFILL++MIGAIVL  R +  ++RQDI+ 
Sbjct: 121 PSNTIINKTITNTESLGLVIYTDYIFFFQLSGFILLVAMIGAIVLTFRRKESLRRQDITT 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q+     +S+ +V+VK  +G+
Sbjct: 181 QVSRERTDSVELVEVKHSEGV 201


>gi|152979954|ref|YP_001353161.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille]
 gi|151280031|gb|ABR88441.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille]
          Length = 213

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 110/195 (56%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + ++++  V+T  NP+++   L+ +F +AA L++LL AEF++++ ++
Sbjct: 1   MEFTTVLFYVFSAILVLAAIRVITESNPVHAALFLVLSFCSAAALWMLLKAEFLSIVLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MM+DI +             +  IG++    +        + +  +
Sbjct: 61  VYVGAVMVLFLFVVMMVDIKLTKLREGFWGYLPLAATIGVVIVLEMALVLFRGFWRSHTQ 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           +  +     N + +GK++YT Y Y  EI+  +LL+ MI A+ L +R R+D K       +
Sbjct: 121 VPEVSANIGNAKELGKLIYTDYLYAFEIAAVLLLVGMIAAVALTMRKRKDSKYFAPGDAV 180

Query: 181 ESNPDNSIVMVKVKS 195
                + + +VK+K+
Sbjct: 181 RVKASDRLRVVKMKA 195


>gi|319794659|ref|YP_004156299.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax
           paradoxus EPS]
 gi|315597122|gb|ADU38188.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax
           paradoxus EPS]
          Length = 221

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 119/196 (60%), Gaps = 2/196 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++  FYLF+ + + ++F V+T RNP+Y+   L+ AF  A+ ++LLL AEF+A+  ++
Sbjct: 1   MDVKTGLFYLFAAVLLFAAFRVITARNPVYAALYLVLAFFQASAIWLLLRAEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI+++       + F  +  +G L A     V    F +  A 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVDSLRQGFWKHFPLAAGVGALIALEMAAVLMGGFRLGEAP 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             ++      +N   +GK+LY++Y YPLEI+  ILL+++I AI L LR R+D K  + S 
Sbjct: 121 RAMAVTSPNTSNTMELGKLLYSEYLYPLEIAAVILLVAIIAAIALTLRTRKDSKYTNPSD 180

Query: 179 QLESNPDNSIVMVKVK 194
           Q+     + + +V++ 
Sbjct: 181 QVRVKARDRVRIVQMP 196


>gi|306843748|ref|ZP_07476347.1| NADH dehydrogenase subunit J [Brucella sp. BO1]
 gi|306275939|gb|EFM57652.1| NADH dehydrogenase subunit J [Brucella sp. BO1]
          Length = 205

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/190 (44%), Positives = 122/190 (64%), Gaps = 4/190 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF+
Sbjct: 16  IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 75

Query: 74  IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---N 129
           +MMLD+D  E+     +   +G+    IL  ELI   ++ M     G+ +  +       
Sbjct: 76  VMMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVATRT 135

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
           N   +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ IS Q+   P+ +I 
Sbjct: 136 NTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSISAQVARTPETAIE 195

Query: 190 MVKVKSGKGI 199
           + KV++GKGI
Sbjct: 196 IRKVETGKGI 205


>gi|153009742|ref|YP_001370957.1| NADH dehydrogenase subunit J [Ochrobactrum anthropi ATCC 49188]
 gi|151561630|gb|ABS15128.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ochrobactrum
           anthropi ATCC 49188]
          Length = 205

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/190 (43%), Positives = 123/190 (64%), Gaps = 4/190 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF+
Sbjct: 16  IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 75

Query: 74  IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS---RLVFKGN 129
           +MMLD+D  E+     +   +G+    IL  ELI   ++ M     G+ +     + + +
Sbjct: 76  VMMLDVDFSELKRGALQYAPVGALVGLILLGELIFVFASNMFAPKLGQGAVPIPNIAERS 135

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
           N   +G +LYT + +  +++G +LL++MIGAIVL LRH+ ++KRQ I  Q+   P+ +I 
Sbjct: 136 NTAALGDILYTDFVFYFQVAGLVLLVAMIGAIVLTLRHKPNVKRQSIPTQVARTPETAIE 195

Query: 190 MVKVKSGKGI 199
           + KV++GKGI
Sbjct: 196 IKKVETGKGI 205


>gi|289207902|ref|YP_003459968.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thioalkalivibrio sp. K90mix]
 gi|288943533|gb|ADC71232.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thioalkalivibrio sp. K90mix]
          Length = 217

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 109/197 (55%), Gaps = 2/197 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FYLF  + +  +  +++VRNP+++   L+  FV AA ++LL  AEF+ ++ ++
Sbjct: 1   MTFELILFYLFGAILLGGALAMISVRNPVHAALFLVLCFVAAAAVWLLAEAEFLGIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI++                + +  A ++V       +     
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLAKLREGFTEYLPVGIVVAVAMATVLVAV--ITRYITMDV 118

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
             R   +  N E +G +LYT+Y YP EI+  ILL+++I AI L +R R D K  D  +Q+
Sbjct: 119 PERAGPEYANTEALGAILYTEYVYPFEIAAVILLVAIIAAISLTMRKRPDNKSIDPGQQM 178

Query: 181 ESNPDNSIVMVKVKSGK 197
             + +  + MV + S K
Sbjct: 179 AVSREGRVRMVSMASEK 195


>gi|121593386|ref|YP_985282.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Acidovorax
           sp. JS42]
 gi|120605466|gb|ABM41206.1| NADH dehydrogenase subunit J [Acidovorax sp. JS42]
          Length = 222

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 124/206 (60%), Gaps = 9/206 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLF+ + + ++F V+T RNP+++V  LI AF  AAG++LLL AEF+A+  ++
Sbjct: 1   MDAKTGFFYLFAVVLLYAAFRVITARNPVHAVLHLILAFSQAAGIWLLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSAE 118
           VY+GAV+V FLF++MMLDI I+       + F  +  IG +       V  + F      
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRIDAVRKGFWKHFPVAALIGAIVTFEMAAVLMTGFRGMEEP 120

Query: 119 GELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
             ++ +V          +N + +GK+LYT+Y YP+E++  ILL++MI AI L LR R+D 
Sbjct: 121 KAIADVVVNAAGQAVPYSNTKALGKLLYTEYLYPVEVAAVILLVAMIAAIALTLRQRKDS 180

Query: 172 KRQDISKQLESNPDNSIVMVKVKSGK 197
           K  D S+Q+     + +VMV++   +
Sbjct: 181 KAIDPSEQVRVRARDRLVMVQLPVTQ 206


>gi|241763297|ref|ZP_04761354.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           delafieldii 2AN]
 gi|241367572|gb|EER61859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           delafieldii 2AN]
          Length = 222

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/201 (39%), Positives = 121/201 (60%), Gaps = 8/201 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F V+T RNP+++V  LI AF  AA ++LLL AEF+A++ ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118
           VY+GAV+V FLF++MMLDI I+       + F  + FIG + A     V    F      
Sbjct: 61  VYLGAVMVLFLFVVMMLDIHIDTIRKGFWKHFPLAAFIGAMIALEMAAVLMGGFRGLDEP 120

Query: 119 G------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  + +  V   +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR R+D K
Sbjct: 121 KAAAVVLDAAGQVVPYSNAKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTK 180

Query: 173 RQDISKQLESNPDNSIVMVKV 193
             D S Q+     + + +VK+
Sbjct: 181 AIDPSSQIRVRAKDRLQVVKL 201


>gi|266660|sp|P29922|NQO10_PARDE RecName: Full=NADH-quinone oxidoreductase chain 10; AltName:
           Full=NADH dehydrogenase I, chain 10; AltName:
           Full=NDH-1, chain 10
 gi|150612|gb|AAA25596.1| NADH dehydrogenase [Paracoccus denitrificans]
          Length = 200

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 127/200 (63%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FYLF+  A ++ F+VV  RNP++SV  LI AF++AAGLF+L GAEFVAM+ +VVY
Sbjct: 1   MMTFAFYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLD+D    +    R    +  IG++    +  A +    S + E  
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTPSDQAESL 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             + +     N   +G VLY +Y    +++G +LL++MIGAIVL +RHR+D+KRQ++ +Q
Sbjct: 121 RAAPVDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVAMIGAIVLTMRHRKDVKRQNVLEQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P  ++ +  VK G+G+
Sbjct: 181 MWRDPAKTMELKDVKPGQGL 200


>gi|23501698|ref|NP_697825.1| NADH dehydrogenase subunit J [Brucella suis 1330]
 gi|62289760|ref|YP_221553.1| NADH dehydrogenase subunit J [Brucella abortus bv. 1 str. 9-941]
 gi|82699688|ref|YP_414262.1| NADH dehydrogenase subunit J [Brucella melitensis biovar Abortus
           2308]
 gi|148559090|ref|YP_001258789.1| NADH dehydrogenase subunit J [Brucella ovis ATCC 25840]
 gi|161618775|ref|YP_001592662.1| NADH dehydrogenase subunit J [Brucella canis ATCC 23365]
 gi|163843084|ref|YP_001627488.1| NADH dehydrogenase subunit J [Brucella suis ATCC 23445]
 gi|189024005|ref|YP_001934773.1| NADH dehydrogenase subunit J [Brucella abortus S19]
 gi|225852327|ref|YP_002732560.1| NADH dehydrogenase subunit J [Brucella melitensis ATCC 23457]
 gi|254689067|ref|ZP_05152321.1| NADH dehydrogenase subunit J [Brucella abortus bv. 6 str. 870]
 gi|254693549|ref|ZP_05155377.1| NADH dehydrogenase subunit J [Brucella abortus bv. 3 str. Tulya]
 gi|254697201|ref|ZP_05159029.1| NADH dehydrogenase subunit J [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701579|ref|ZP_05163407.1| NADH dehydrogenase subunit J [Brucella suis bv. 5 str. 513]
 gi|254704126|ref|ZP_05165954.1| NADH dehydrogenase subunit J [Brucella suis bv. 3 str. 686]
 gi|254706974|ref|ZP_05168802.1| NADH dehydrogenase subunit J [Brucella pinnipedialis M163/99/10]
 gi|254709919|ref|ZP_05171730.1| NADH dehydrogenase subunit J [Brucella pinnipedialis B2/94]
 gi|254713920|ref|ZP_05175731.1| NADH dehydrogenase subunit J [Brucella ceti M644/93/1]
 gi|254717022|ref|ZP_05178833.1| NADH dehydrogenase subunit J [Brucella ceti M13/05/1]
 gi|254730097|ref|ZP_05188675.1| NADH dehydrogenase subunit J [Brucella abortus bv. 4 str. 292]
 gi|256031412|ref|ZP_05445026.1| NADH dehydrogenase subunit J [Brucella pinnipedialis M292/94/1]
 gi|256044490|ref|ZP_05447394.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060923|ref|ZP_05451081.1| NADH dehydrogenase subunit J [Brucella neotomae 5K33]
 gi|256113346|ref|ZP_05454204.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 3 str. Ether]
 gi|256159533|ref|ZP_05457301.1| NADH dehydrogenase subunit J [Brucella ceti M490/95/1]
 gi|256254820|ref|ZP_05460356.1| NADH dehydrogenase subunit J [Brucella ceti B1/94]
 gi|256257316|ref|ZP_05462852.1| NADH dehydrogenase subunit J [Brucella abortus bv. 9 str. C68]
 gi|256264174|ref|ZP_05466706.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|256369243|ref|YP_003106751.1| NADH dehydrogenase subunit J [Brucella microti CCM 4915]
 gi|260168546|ref|ZP_05755357.1| NADH dehydrogenase subunit J [Brucella sp. F5/99]
 gi|260545490|ref|ZP_05821231.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella abortus NCTC
           8038]
 gi|260563844|ref|ZP_05834330.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260566625|ref|ZP_05837095.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella suis bv. 4
           str. 40]
 gi|260754565|ref|ZP_05866913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 6 str. 870]
 gi|260757786|ref|ZP_05870134.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 4 str. 292]
 gi|260761611|ref|ZP_05873954.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260883592|ref|ZP_05895206.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 9 str. C68]
 gi|261213814|ref|ZP_05928095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 3 str. Tulya]
 gi|261218829|ref|ZP_05933110.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M13/05/1]
 gi|261222001|ref|ZP_05936282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           B1/94]
 gi|261314437|ref|ZP_05953634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis M163/99/10]
 gi|261317465|ref|ZP_05956662.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis B2/94]
 gi|261321672|ref|ZP_05960869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M644/93/1]
 gi|261324923|ref|ZP_05964120.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           neotomae 5K33]
 gi|261752132|ref|ZP_05995841.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis
           bv. 5 str. 513]
 gi|261754792|ref|ZP_05998501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis
           bv. 3 str. 686]
 gi|261758019|ref|ZP_06001728.1| NADH dehydrogenase subunit J [Brucella sp. F5/99]
 gi|265988501|ref|ZP_06101058.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis M292/94/1]
 gi|265990914|ref|ZP_06103471.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994752|ref|ZP_06107309.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           melitensis bv. 3 str. Ether]
 gi|265997965|ref|ZP_06110522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M490/95/1]
 gi|294852168|ref|ZP_06792841.1| NADH dehydrogenase I subunit J [Brucella sp. NVSL 07-0026]
 gi|297248165|ref|ZP_06931883.1| NADH dehydrogenase I subunit J [Brucella abortus bv. 5 str. B3196]
 gi|23347621|gb|AAN29740.1| NADH dehydrogenase I, J subunit [Brucella suis 1330]
 gi|62195892|gb|AAX74192.1| NuoJ, NADH dehydrogenase I, J subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615789|emb|CAJ10787.1| Photosynthetic reaction centre
           protein:NADH-ubiquinone/plastoquinone oxidoreductase,
           chain 6 [Brucella melitensis biovar Abortus 2308]
 gi|148370347|gb|ABQ60326.1| NADH dehydrogenase I, J subunit [Brucella ovis ATCC 25840]
 gi|161335586|gb|ABX61891.1| NADH-quinone oxidoreductase chain J [Brucella canis ATCC 23365]
 gi|163673807|gb|ABY37918.1| NADH-quinone oxidoreductase chain J [Brucella suis ATCC 23445]
 gi|189019577|gb|ACD72299.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Brucella
           abortus S19]
 gi|225640692|gb|ACO00606.1| NADH-quinone oxidoreductase subunit J [Brucella melitensis ATCC
           23457]
 gi|255999403|gb|ACU47802.1| NADH dehydrogenase subunit J [Brucella microti CCM 4915]
 gi|260096897|gb|EEW80772.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella abortus NCTC
           8038]
 gi|260153860|gb|EEW88952.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260156143|gb|EEW91223.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella suis bv. 4
           str. 40]
 gi|260668104|gb|EEX55044.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 4 str. 292]
 gi|260672043|gb|EEX58864.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260674673|gb|EEX61494.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 6 str. 870]
 gi|260873120|gb|EEX80189.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 9 str. C68]
 gi|260915421|gb|EEX82282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           abortus bv. 3 str. Tulya]
 gi|260920585|gb|EEX87238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           B1/94]
 gi|260923918|gb|EEX90486.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M13/05/1]
 gi|261294362|gb|EEX97858.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M644/93/1]
 gi|261296688|gb|EEY00185.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis B2/94]
 gi|261300903|gb|EEY04400.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           neotomae 5K33]
 gi|261303463|gb|EEY06960.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis M163/99/10]
 gi|261738003|gb|EEY25999.1| NADH dehydrogenase subunit J [Brucella sp. F5/99]
 gi|261741885|gb|EEY29811.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis
           bv. 5 str. 513]
 gi|261744545|gb|EEY32471.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis
           bv. 3 str. 686]
 gi|262552433|gb|EEZ08423.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti
           M490/95/1]
 gi|262765865|gb|EEZ11654.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001698|gb|EEZ14273.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094392|gb|EEZ18237.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264660698|gb|EEZ30959.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella
           pinnipedialis M292/94/1]
 gi|294820757|gb|EFG37756.1| NADH dehydrogenase I subunit J [Brucella sp. NVSL 07-0026]
 gi|297175334|gb|EFH34681.1| NADH dehydrogenase I subunit J [Brucella abortus bv. 5 str. B3196]
 gi|326408834|gb|ADZ65899.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Brucella
           melitensis M28]
 gi|326538550|gb|ADZ86765.1| NADH-quinone oxidoreductase subunit J [Brucella melitensis M5-90]
          Length = 205

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/190 (43%), Positives = 121/190 (63%), Gaps = 4/190 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF+
Sbjct: 16  IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 75

Query: 74  IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---N 129
           +MMLD+D  E+     +   +G+    IL  ELI   ++ M     G+ +  +       
Sbjct: 76  VMMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVATRT 135

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
           N   +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ I  Q+   P+ +I 
Sbjct: 136 NTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETAIE 195

Query: 190 MVKVKSGKGI 199
           + KV++GKGI
Sbjct: 196 IRKVETGKGI 205


>gi|160900603|ref|YP_001566185.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Delftia
           acidovorans SPH-1]
 gi|160366187|gb|ABX37800.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Delftia
           acidovorans SPH-1]
          Length = 222

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 123/202 (60%), Gaps = 8/202 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F VVT RNP+++V +LI AF  AAG++LLL AEF+ +  ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAGIWLLLKAEFLGVTLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFM----- 113
           VY+GAV+V FLF++MMLDI I+       + F  +  IG L A    +V    F      
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRIDAVRQGFWKHFPFAALIGALIAFEMGMVLMGGFSGVEEP 120

Query: 114 -VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
              +A    +    + +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR R+D K
Sbjct: 121 KAIAATVNAAGQTVQYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRKRKDSK 180

Query: 173 RQDISKQLESNPDNSIVMVKVK 194
             + ++Q+     + + +VKV 
Sbjct: 181 AVNPAQQIRVRAKDRLELVKVP 202


>gi|157964938|ref|YP_001499762.1| NADH dehydrogenase subunit J [Rickettsia massiliae MTU5]
 gi|157844714|gb|ABV85215.1| NADH dehydrogenase I chain J [Rickettsia massiliae MTU5]
          Length = 208

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V
Sbjct: 1   MNTMPIFFYLFATLITISSLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSA 117
           +YVGAV V FLF+IMMLD+       + K     S  I ++      +I+      +   
Sbjct: 61  IYVGAVAVLFLFVIMMLDMHFNKTITQLKENLALSILIALIMFADLVIIILLGTKNINFN 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
                 +    +N + IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDIS
Sbjct: 121 SNVSFAITNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDIS 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           KQL  N +N+++M K    KG+
Sbjct: 181 KQLRHNKENTVLMTKPILNKGV 202


>gi|257095310|ref|YP_003168951.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047834|gb|ACV37022.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 200

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 117/198 (59%), Gaps = 1/198 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY  S + + +   V+T RNP+++   L+ AF  A+G+++LL AEF+AM  ++
Sbjct: 1   MEFKTFVFYFLSAILVFAGLRVITARNPVHAALFLVLAFFTASGVWILLQAEFLAMALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLDI+++ + E       LGS    ++ AE+ +      +   E 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDRLREGFWSYLPLGSIIALLMVAEMGLVLGGNYLGLFES 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            + +     +NV+ +G++++T+Y YP E++  ILL+ ++ A+ L  R +R  K  + S+Q
Sbjct: 121 SVRQTGADESNVQAVGRLMFTEYVYPFELASVILLVGIVAAVALTQRGKRKNKAVNPSQQ 180

Query: 180 LESNPDNSIVMVKVKSGK 197
           +       + ++++ + K
Sbjct: 181 VFVKAGERVRVLQMPAEK 198


>gi|92117734|ref|YP_577463.1| NADH dehydrogenase subunit J [Nitrobacter hamburgensis X14]
 gi|91800628|gb|ABE63003.1| NADH dehydrogenase subunit J [Nitrobacter hamburgensis X14]
          Length = 212

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 90/202 (44%), Positives = 136/202 (67%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +LFFYLF+ + + S+ +V++ RNP++SV  LI AFVNAAGLF+L+GAEF+AMI +V
Sbjct: 1   MILPALFFYLFAGVCVASAAMVISSRNPVHSVLFLILAFVNAAGLFILMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--A 117
           VYVGAV V FLF+IMMLD++  E+ E   +   LG     I   EL++    + +     
Sbjct: 61  VYVGAVAVLFLFVIMMLDVNFAELREGFLEYLPLGLVIAAIFLLELLLVVGGWTLNPTVT 120

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
           +   + +    +N E IG VLYT+Y +  +++G +LL++M+GAIVL LRHR  +KRQDI+
Sbjct: 121 KSITAAIPGDVSNTEAIGLVLYTKYIHYFQLAGMVLLVAMVGAIVLTLRHRASVKRQDIN 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q    P+ ++ + KV SG+G+
Sbjct: 181 VQNARTPEMAMSVRKVASGRGL 202


>gi|119384967|ref|YP_916023.1| NADH dehydrogenase subunit J [Paracoccus denitrificans PD1222]
 gi|119374734|gb|ABL70327.1| NADH dehydrogenase subunit J [Paracoccus denitrificans PD1222]
          Length = 199

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 126/198 (63%), Gaps = 3/198 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +  FYLF+  A ++ F+VV  RNP++SV  LI AF++AAGLF+L GAEFVAM+ +VVYVG
Sbjct: 2   TFAFYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE---L 121
           AV V FLF++MMLD+D    +    R    +  IG++    +  A +    S + E    
Sbjct: 62  AVAVLFLFVVMMLDVDFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTPSDQAESLRA 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           + +     N   +G VLY +Y    +++G +LL++MIGAIVL +RHR+D+KRQ++ +Q+ 
Sbjct: 122 APVDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVAMIGAIVLTMRHRKDVKRQNVLEQMW 181

Query: 182 SNPDNSIVMVKVKSGKGI 199
            +P  ++ +  VK G+G+
Sbjct: 182 RDPAKTMELKDVKPGQGL 199


>gi|239946839|ref|ZP_04698592.1| NADH-quinone oxidoreductase subunit J [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921115|gb|EER21139.1| NADH-quinone oxidoreductase subunit J [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 205

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 123/198 (62%), Gaps = 5/198 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  IS   VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISGLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL----AAELIVCASNFMVFSAEGEL 121
           V V FLF+IMMLD+       + K     S FI ++       +I+  +  + FS++   
Sbjct: 63  VAVLFLFVIMMLDMHFNKTITQLKENLALSIFIALIMFADLVTVILLGTKNINFSSDISF 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           + +    +N + IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISKQL 
Sbjct: 123 A-ITNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLR 181

Query: 182 SNPDNSIVMVKVKSGKGI 199
            N +N+++M K    KG+
Sbjct: 182 HNKENTVLMTKPILNKGV 199


>gi|209964541|ref|YP_002297456.1| NADH-quinone oxidoreductase chain J [Rhodospirillum centenum SW]
 gi|209958007|gb|ACI98643.1| NADH-quinone oxidoreductase chain J [Rhodospirillum centenum SW]
          Length = 204

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 128/204 (62%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+ +  FY+F+ + + +  +VV+ RNP++SV  LI AF NAA LFLL+GAEF+AMI ++
Sbjct: 1   MVLSAAAFYVFAAILLAAGVMVVSARNPVHSVLYLIVAFFNAAVLFLLIGAEFIAMILII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV----F 115
           VYVGAV V FLF++MMLDI  +      ++       IG IL AEL +   ++ V     
Sbjct: 61  VYVGAVAVLFLFVVMMLDISFQEIRRTYRQYVPLGALIGTILMAELALVTVSWAVAPDAA 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           ++    +      NN E +G+VLYT Y +  ++SG ILL++MIGAIVL LR R  ++RQ 
Sbjct: 121 ASLAAPTPADTAVNNTEALGQVLYTHYVFAFQVSGLILLVAMIGAIVLTLRSRGGLRRQV 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I++Q+   P+  + + KV +  G+
Sbjct: 181 IAQQIRRRPEEVLSVRKVPTRGGV 204


>gi|114797370|ref|YP_760458.1| NADH-quinone oxidoreductase subunit J [Hyphomonas neptunium ATCC
           15444]
 gi|114737544|gb|ABI75669.1| NADH-quinone oxidoreductase, J subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 197

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 118/197 (59%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L + + ++++  V+  RNP++SV  LI  F +AAGL +L+GAEF+AM+ +VVY
Sbjct: 1   MALIAFSLIAAIVVLAAMFVIAARNPVHSVLWLILTFFSAAGLLVLIGAEFLAMLLVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V FLF++MMLD+D    +    R +  +  +G++    +   S       EG ++
Sbjct: 61  VGAVAVLFLFVVMMLDVDFVELKQGTLRYWPFALLVGVILLAELALVSVAGDAIPEGNMN 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                  N E IG V+YT Y    ++SG +LL++M+GAIVL LRHR  IKRQDI+KQ   
Sbjct: 121 ASPNAPTNAEAIGYVMYTDYLLLFQLSGIVLLIAMVGAIVLTLRHRPHIKRQDIAKQTGR 180

Query: 183 NPDNSIVMVKVKSGKGI 199
              +++ +     G+GI
Sbjct: 181 RRVDAVDLKDPTPGQGI 197


>gi|124266605|ref|YP_001020609.1| NADH-ubiquinone oxidoreductase, subunit J [Methylibium
           petroleiphilum PM1]
 gi|124259380|gb|ABM94374.1| NADH-ubiquinone oxidoreductase, chain J [Methylibium petroleiphilum
           PM1]
          Length = 215

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 117/195 (60%), Gaps = 1/195 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +S  FY+FS + + +SF V+T R+ +Y+   L+ AF NAA +++LL AEF+A+  ++
Sbjct: 1   MNTESALFYVFSAILLFASFRVITARSAVYAALYLVLAFFNAACVWMLLEAEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLD + +       + F  +  IG ++AAE+I             
Sbjct: 61  VYVGAVMVLFLFVVMMLDANADTVRKGFWQLFPVAGTIGAVIAAEMIWVLRRGFDLPEAP 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
            L  +  +  N + +G  +YT Y YPL+I+  +LL+++I AI L LR R+D K  D S Q
Sbjct: 121 PLDAVAAQMGNTKLLGIEIYTHYLYPLQIAAVLLLVAIIAAIALTLRKRKDSKYVDPSAQ 180

Query: 180 LESNPDNSIVMVKVK 194
           ++    + + +V+++
Sbjct: 181 VKVRKADRVRIVQMQ 195


>gi|88812967|ref|ZP_01128210.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrococcus
           mobilis Nb-231]
 gi|88789745|gb|EAR20869.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrococcus
           mobilis Nb-231]
          Length = 202

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 118/199 (59%), Gaps = 4/199 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++ L FY+F+ + + ++ +V+T +NP++S   L+ AF N+A L+L+  AEF+ +  ++VY
Sbjct: 2   IELLLFYVFAAVLLFAATMVITAKNPVHSALFLVLAFFNSAALWLMAEAEFLGIALVLVY 61

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAE 118
           VGAV+V FLF++MMLDI++  + E   +   +G+    ++  E+ +   +    ++    
Sbjct: 62  VGAVMVLFLFVVMMLDINLAPMREGFARYLPIGALVGCVMVVEMALVVGSKDVNLIHGGP 121

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              +      +N + +G VLYT YAYP EI+  +LL++++ AI+L  R R   K+Q+I +
Sbjct: 122 VTSAAEGVGMSNTKALGSVLYTVYAYPFEIASVVLLVAIVAAIMLTHRRRPGTKQQNIDR 181

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+    +  + +V +   K
Sbjct: 182 QVRVRKEQRLRIVTMAPEK 200


>gi|238028134|ref|YP_002912365.1| NADH dehydrogenase subunit J [Burkholderia glumae BGR1]
 gi|237877328|gb|ACR29661.1| Hypothetical protein bglu_1g25850 [Burkholderia glumae BGR1]
          Length = 220

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 123/205 (60%), Gaps = 12/205 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + +IS+  V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVISALKVITARNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     +R    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVDVLRRDFRRFVPMATVVG----AIIVVETALILWRGYGA 116

Query: 121 LSRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +  V           +N   IGKV+YT Y +  EI+G +LL+++I A+ L     +  K
Sbjct: 117 TASPVRDVASGALANMSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAVSLTAGKGKYRK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
           RQ++S+Q+    ++ + +VK+ + K
Sbjct: 177 RQNVSEQIRVRREDRVRLVKMAAEK 201


>gi|197105258|ref|YP_002130635.1| NADH dehydrogenase I, J subunit [Phenylobacterium zucineum HLK1]
 gi|196478678|gb|ACG78206.1| NADH dehydrogenase I, J subunit [Phenylobacterium zucineum HLK1]
          Length = 207

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 85/205 (41%), Positives = 130/205 (63%), Gaps = 6/205 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYL + + + + F VV+ RNP++SV  LI AF +AAGLF+L+GAEF+AM+ +V
Sbjct: 1   MALQAIAFYLMAAVTVSAGFGVVSARNPVHSVLWLILAFFSAAGLFVLMGAEFLAMLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D   + +   +   +G     +LA E+IV ++      A  
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFTALRQGFARYMPVGLLIAAVLAVEMIVVSTTVATRGAAR 120

Query: 120 ELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                +  G      N E IG+VLYT Y Y  + +G +LL++MIGAIVL LRH+  +KRQ
Sbjct: 121 ANETPMAAGQGADVTNAEAIGRVLYTDYVYFFQAAGLVLLVAMIGAIVLTLRHKPGVKRQ 180

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
            ++ Q+  +P   + +V +K G+G+
Sbjct: 181 LVADQVLRSPKTGMRVVSLKPGEGV 205


>gi|332185920|ref|ZP_08387667.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Sphingomonas sp. S17]
 gi|332014278|gb|EGI56336.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Sphingomonas sp. S17]
          Length = 203

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 118/200 (59%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++ FY+F+ + I+S+ L +  RNP++SV  LI AF NAAGL +L GAEF+AM+ ++VY
Sbjct: 2   IQAIAFYIFATVVIVSAGLTIASRNPVHSVMWLILAFFNAAGLMVLCGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EG 119
           VGAV V FLF++MMLDI++        R       + +     ++ A             
Sbjct: 62  VGAVAVLFLFVVMMLDIEVAAMRAGFARYLPLGLALAVALLAEVIIAFQAWSVGGVQLAA 121

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             + +  + +N++ IG +LYT+Y +  E +G +LL++MIGAIVL  R R  ++ Q+I+KQ
Sbjct: 122 RAAPIAPEVSNIQAIGNLLYTRYLFIFEGAGLVLLVAMIGAIVLTHRKRGGVRPQNIAKQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
               P  +I  +    G+G+
Sbjct: 182 NARQPHEAIRNINQPIGQGV 201


>gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana)
            tropicalis]
          Length = 1458

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 68/174 (39%), Positives = 104/174 (59%), Gaps = 16/174 (9%)

Query: 1    MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
            M  ++ FFYLFS + + ++F V+  RNP+++V SLI AF  AAG++LLL AEF+ +  ++
Sbjct: 1277 MDAKTGFFYLFSVVLLFAAFRVIMARNPVHAVLSLILAFSQAAGIWLLLKAEFLGITLVL 1336

Query: 61   VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------ 114
            VY+GAV+V FLF++MMLDI I+      ++GF   F +  L   +I      ++      
Sbjct: 1337 VYLGAVMVLFLFVVMMLDIRIDSV----RQGFWKHFPLAALVGAIITFEMALVLMDGFRS 1392

Query: 115  ------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
                   SA  + +      +N   +GK+LYTQY YP+EI+  ILL++MI AI 
Sbjct: 1393 IDEPKAISAVVDAAGQAVPYSNTRVLGKLLYTQYLYPVEIAAVILLVAMIAAIT 1446


>gi|91204900|ref|YP_537255.1| NADH dehydrogenase subunit J [Rickettsia bellii RML369-C]
 gi|157827775|ref|YP_001496839.1| NADH dehydrogenase subunit J [Rickettsia bellii OSU 85-389]
 gi|122426098|sp|Q1RKE8|NUOJ_RICBR RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|91068444|gb|ABE04166.1| NADH dehydrogenase I chain J [Rickettsia bellii RML369-C]
 gi|157803079|gb|ABV79802.1| NADH dehydrogenase subunit J [Rickettsia bellii OSU 85-389]
          Length = 205

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 124/197 (62%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ + IISS  VV  +N +YSV  LIFAF+N +GL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFAFINGSGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122
           V V FLF+IMMLD+    A  + K   + S F+ ++      +I+      +  +     
Sbjct: 63  VAVLFLFVIMMLDMHFNKAIMQLKEKPILSIFVSLIMFADLVVIILLGTKNIHFSSDLSF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N + IGK+LYT +  P +I+G IL ++MIG I L LR R  +KRQ+I+KQL  
Sbjct: 123 AIASDVSNTKAIGKILYTDFMIPFQIAGLILFVAMIGCITLTLRKRDGVKRQNIAKQLSH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N +N+++M K    KGI
Sbjct: 183 NKENAVLMTKPLINKGI 199


>gi|81176537|ref|YP_398421.1| nad6 [Triticum aestivum]
 gi|400642|sp|Q02500|NU6M_WHEAT RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|21826|emb|CAA44009.1| NADH dehydrogenase (ubiquinone) [Triticum aestivum]
 gi|78675261|dbj|BAE47686.1| nad6 [Triticum aestivum]
 gi|169649070|gb|ACA62631.1| nad6 [Triticum aestivum]
          Length = 247

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 11/188 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI+ VV++G
Sbjct: 18  TMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHIG 77

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSR 123
           A+ V FLF++MM +I I        R    S  IG I   E+     N  +       + 
Sbjct: 78  AIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNT 137

Query: 124 L----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                      V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KR
Sbjct: 138 TSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKR 197

Query: 174 QDISKQLE 181
           QD+ ++  
Sbjct: 198 QDVFRRNA 205


>gi|254718920|ref|ZP_05180731.1| NADH dehydrogenase subunit J [Brucella sp. 83/13]
 gi|265983907|ref|ZP_06096642.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella sp.
           83/13]
 gi|306838232|ref|ZP_07471084.1| NADH dehydrogenase subunit J [Brucella sp. NF 2653]
 gi|264662499|gb|EEZ32760.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella sp.
           83/13]
 gi|306406676|gb|EFM62903.1| NADH dehydrogenase subunit J [Brucella sp. NF 2653]
          Length = 205

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/190 (43%), Positives = 120/190 (63%), Gaps = 4/190 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + I S+F+V+  RNP++SV  LI  F NAA LFLL GAEF+AMI LVVYVGAV V FLF+
Sbjct: 16  IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 75

Query: 74  IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---N 129
           +MMLD+D  E+     +   +G+    IL  ELI   ++ M     G+ +  +       
Sbjct: 76  VMMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVATRT 135

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
           N   +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ I  Q+   P+ +I 
Sbjct: 136 NTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETAIE 195

Query: 190 MVKVKSGKGI 199
           + KV+ GKGI
Sbjct: 196 IRKVEMGKGI 205


>gi|198284337|ref|YP_002220658.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666659|ref|YP_002426999.1| NADH-quinone oxidoreductase, J subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248858|gb|ACH84451.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518872|gb|ACK79458.1| NADH-quinone oxidoreductase, J subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 198

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 111/192 (57%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + ++ FY+FS + + S+ LV+T RNP+Y+   L+ AF NAA LF+LLGAEF+ +I ++VY
Sbjct: 4   VTTILFYIFSAILLGSATLVITARNPVYATLYLVLAFFNAAALFILLGAEFLGLILILVY 63

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV+V FLF++MMLDI++   +            I IL    +               +
Sbjct: 64  VGAVMVLFLFVVMMLDINLARIKEGFLSYLPLGLAIAILGVLELAVVFWTSSLGHIPAPA 123

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            L    +N   +G +LYT+Y YP EI+  ILL+++I AI L LR R   K Q+I+ Q+  
Sbjct: 124 ALPADTDNTRALGILLYTKYLYPFEIAAVILLVAIIAAIALTLRRRTGTKTQNIAAQMAV 183

Query: 183 NPDNSIVMVKVK 194
              + + +V ++
Sbjct: 184 RAKDRVQLVDLR 195


>gi|71906597|ref|YP_284184.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Dechloromonas aromatica RCB]
 gi|71846218|gb|AAZ45714.1| NADH dehydrogenase subunit J [Dechloromonas aromatica RCB]
          Length = 198

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 105/197 (53%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q+  FY  S + + +S  V+T RNP+++   LI AF    G++ LL AEF+A+  ++
Sbjct: 1   MDFQTAVFYFLSAILVFASLRVITARNPVHAALHLILAFFTCGGIWALLQAEFLAIAIIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+               +G+L    +        F     
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDRIREGFWNYLPLGALLGLLMVMEMGLVLGSKYFQVPAA 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            + +    +N + IG ++++ Y YP E++  ILL+ MI AIVL  R  +  K  + ++Q+
Sbjct: 121 EAMVPAGVSNTKAIGALMFSDYVYPFELASLILLVGMIAAIVLTYRGPKKSKYTNPNQQV 180

Query: 181 ESNPDNSIVMVKVKSGK 197
                + + ++++   K
Sbjct: 181 FVKAKDRVRVLQMPVEK 197


>gi|229587152|ref|YP_002845653.1| NADH dehydrogenase subunit J [Rickettsia africae ESF-5]
 gi|228022202|gb|ACP53910.1| NADH dehydrogenase I chain J [Rickettsia africae ESF-5]
          Length = 205

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122
           V V FLF+IMMLD+       + K     S FI ++      +I+      +        
Sbjct: 63  VAVLFLFVIMMLDMHFNKKITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N + IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISKQL  
Sbjct: 123 TITNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLRH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N +N+++M K    KG+
Sbjct: 183 NKENTVLMTKPILNKGV 199


>gi|254501714|ref|ZP_05113865.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Labrenzia alexandrii DFL-11]
 gi|222437785|gb|EEE44464.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Labrenzia alexandrii DFL-11]
          Length = 204

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/204 (43%), Positives = 142/204 (69%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++++LFFYLF+ + + S+F+V+  RNP+ SV  LI AFVN+AGLF+LLGAE++A++ +V
Sbjct: 1   MILKALFFYLFAGVTVASAFMVIAARNPVTSVLFLILAFVNSAGLFILLGAEYLALLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF---- 115
           VYVGAV V FLF++MMLD+D +E+ +   +   +G     IL  EL++    +++     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGGLVGLILLVELLMGFGAWVILPELT 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +   E +  + +  N+E +G VLYT+Y Y  +++G ILL++MIGAIVL LRH+ ++KRQD
Sbjct: 121 ANTVEPTPPLTEMTNIEALGSVLYTKYIYFFQVAGLILLVAMIGAIVLTLRHKPNVKRQD 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I  Q+    + ++ + KV++GKGI
Sbjct: 181 IPTQVGRTREAAVEVRKVETGKGI 204


>gi|85374151|ref|YP_458213.1| NADH dehydrogenase I, J subunit [Erythrobacter litoralis HTCC2594]
 gi|84787234|gb|ABC63416.1| NADH dehydrogenase I, J subunit [Erythrobacter litoralis HTCC2594]
          Length = 206

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 119/203 (58%), Gaps = 6/203 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q+  FYLF+ + I S  L +  RNP++SV  LI AF NAAGL +LLGAEF+AM+ ++VY
Sbjct: 2   IQAFAFYLFAALMIASGVLTIMSRNPVHSVLWLILAFFNAAGLMVLLGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA-----SNFMVFSA 117
           VGAV V FLF++MMLDID         + F     I ++    +V       +  +    
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAELRAGFIKNFPLGIAIALVLLAELVLGIGAYRAGIVELGT 121

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK-RQDI 176
               +  +    N+E++G ++Y +Y +  E +G ILL++MIGAIVL  R  ++ +  Q+I
Sbjct: 122 PDGSAAPLVGETNIESLGALMYGKYLFLFEGAGLILLVAMIGAIVLTHRDLKNTRGHQNI 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            KQ+   P+ + VM + + GKG+
Sbjct: 182 GKQVSRRPEEATVMKQPEIGKGV 204


>gi|120609959|ref|YP_969637.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Acidovorax
           citrulli AAC00-1]
 gi|120588423|gb|ABM31863.1| NADH dehydrogenase subunit J [Acidovorax citrulli AAC00-1]
          Length = 222

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/205 (39%), Positives = 125/205 (60%), Gaps = 8/205 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F V+T RNP+++V  LI AF  AA ++LLL AEF+A+  L+
Sbjct: 1   MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113
           VY+GAV+V FLF++MMLDI I+       R F  + FIG L A  +              
Sbjct: 61  VYLGAVMVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEP 120

Query: 114 -VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
              +A  + +  V + +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR R+D K
Sbjct: 121 KAVAAMVDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTK 180

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
              +S+Q+     + + +VKV + +
Sbjct: 181 VTKVSEQVRVRAADRVELVKVAATQ 205


>gi|89900295|ref|YP_522766.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rhodoferax
           ferrireducens T118]
 gi|89345032|gb|ABD69235.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodoferax
           ferrireducens T118]
          Length = 219

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 5/202 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++ FFY FS + + ++F V+T RNP+Y+V  L+ AF  AA ++LLL AEF+A+  ++
Sbjct: 1   MDVKTGFFYFFSIVLLFAAFRVITSRNPVYAVLYLVLAFFQAAAIWLLLRAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI ++       + F  +  +G+  A     V    F V    
Sbjct: 61  VYVGAVMVLFLFVVMMLDIKVDGLREGFWKHFPLAATVGVFIALEMAAVLMGGFRVGDEP 120

Query: 119 GE---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                L +   + +N   +GKVLY QY YPLEI+G ILL++MI AI L LR R+D K+  
Sbjct: 121 QSAVALGQASAEFSNTRELGKVLYGQYVYPLEIAGAILLVAMIAAIALTLRQRKDSKQVS 180

Query: 176 ISKQLESNPDNSIVMVKVKSGK 197
            S Q+     + + ++K+ S K
Sbjct: 181 PSMQVRVKARDRMTVLKMASTK 202


>gi|85708743|ref|ZP_01039809.1| NADH dehydrogenase subunit J [Erythrobacter sp. NAP1]
 gi|85690277|gb|EAQ30280.1| NADH dehydrogenase subunit J [Erythrobacter sp. NAP1]
          Length = 207

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 115/204 (56%), Gaps = 7/204 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q L FYLF+ + I S+ +V+  RNP++SV  LI +F NAAGL +L+GAEF+AM+ ++VY
Sbjct: 2   IQVLAFYLFAGLVIASAVMVIMARNPVHSVLWLILSFFNAAGLMVLVGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-----FSA 117
           VGAV V FLF++MMLDID         + F     + ++    +                
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAAMRAGFIKNFPLGIAVALILLAELFLGLGAYGAGGIELGT 121

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR--DIKRQD 175
               +      +N++ IG +LY +Y    EI+G ILL++MIGAIVL  R  +     RQD
Sbjct: 122 PDGTAAERGDVSNIQAIGALLYGRYIVLFEIAGIILLVAMIGAIVLTHREAKPGARGRQD 181

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I KQ+   P+ + VM   + GKG+
Sbjct: 182 IGKQIRRRPEEATVMKNPEYGKGV 205


>gi|15893147|ref|NP_360861.1| NADH dehydrogenase subunit J [Rickettsia conorii str. Malish 7]
 gi|238650810|ref|YP_002916665.1| NADH dehydrogenase subunit J [Rickettsia peacockii str. Rustic]
 gi|20139034|sp|Q92G99|NUOJ_RICCN RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|15620356|gb|AAL03762.1| NADH dehydrogenase I chain J [Rickettsia conorii str. Malish 7]
 gi|238624908|gb|ACR47614.1| NADH dehydrogenase subunit J [Rickettsia peacockii str. Rustic]
          Length = 205

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122
           V V FLF+IMMLD+       + K     S FI ++      +I+      +        
Sbjct: 63  VAVLFLFVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N + IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISKQL  
Sbjct: 123 TITNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLRH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N +N+++M K    KG+
Sbjct: 183 NKENTVLMTKPILNKGV 199


>gi|315499799|ref|YP_004088602.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Asticcacaulis
           excentricus CB 48]
 gi|315417811|gb|ADU14451.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Asticcacaulis
           excentricus CB 48]
          Length = 202

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/200 (43%), Positives = 126/200 (63%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++ FY+ + + ++S  LV+T RNP++SV  LI AF +AAGLF+L+GAEF+AM+ +VVY
Sbjct: 1   MLAIAFYILAAVTVVSGALVITARNPVHSVLFLILAFFSAAGLFVLMGAEFLAMLLVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V FLF++MMLD+D                 +GIL    ++  S+ +         
Sbjct: 61  VGAVAVLFLFVVMMLDVDFTKLRQGFANYLPIGMVVGILLLIELIMISSAVAQRGAAAGQ 120

Query: 123 RLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                G   +N+E IG+VLYT Y Y  + SG +LL++MIGAIVL L+HR  +KRQDI  Q
Sbjct: 121 SPQVYGAEMSNIEAIGRVLYTDYVYVFQASGLVLLVAMIGAIVLTLQHRTYVKRQDIHTQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +     +++ +VKVK+G+GI
Sbjct: 181 VTRRRKDAVAIVKVKTGEGI 200


>gi|315122716|ref|YP_004063205.1| NADH dehydrogenase subunit J [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496118|gb|ADR52717.1| NADH dehydrogenase subunit J [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 148

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 115/144 (79%), Positives = 130/144 (90%)

Query: 56  MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           MITLVVYVGAVIV FLFIIMMLDID+E A+PR+ R FLG+FFIGILAAEL VCASN +VF
Sbjct: 1   MITLVVYVGAVIVLFLFIIMMLDIDVEEAKPRRNRPFLGAFFIGILAAELFVCASNLLVF 60

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             EGE+SRLVF+GNN E+IG+VLYT+Y YPLEISGFILLLSMIGAIVLMLRHR  IKRQ+
Sbjct: 61  GLEGEVSRLVFRGNNTEDIGEVLYTKYIYPLEISGFILLLSMIGAIVLMLRHRPGIKRQN 120

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           ISKQL+SNP NS+ +VKVKSG+GI
Sbjct: 121 ISKQLKSNPGNSVTVVKVKSGEGI 144


>gi|34581183|ref|ZP_00142663.1| NADH dehydrogenase I chain J [Rickettsia sibirica 246]
 gi|28262568|gb|EAA26072.1| NADH dehydrogenase I chain J [Rickettsia sibirica 246]
          Length = 205

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/197 (41%), Positives = 118/197 (59%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122
           V V FLF+IMMLD+       + K     S FI ++      +I+      +        
Sbjct: 63  VAVLFLFVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N + IG +LYT +  P +++G IL ++MI  I L L+ R  +KRQDISKQL  
Sbjct: 123 TITNNISNTKAIGGILYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLRH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N +N+++M K    KG+
Sbjct: 183 NKENTVLMTKPILNKGV 199


>gi|330817783|ref|YP_004361488.1| hypothetical protein bgla_1g29200 [Burkholderia gladioli BSR3]
 gi|327370176|gb|AEA61532.1| hypothetical protein bgla_1g29200 [Burkholderia gladioli BSR3]
          Length = 220

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/201 (35%), Positives = 117/201 (58%), Gaps = 12/201 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + +IS   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFSLLLVISGLKVITARNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+ +V     +R    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINTDVLRRDFRRFVPMATVVG----AIIVVETALILWRGYGA 116

Query: 121 LSRLV--------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            S  V            N + IGKV+YT Y +  EI+G +LL+++I A+ L     ++ K
Sbjct: 117 TSSPVREIASGALANMTNTQLIGKVIYTDYIFAFEIAGLVLLVAIIAAVSLTSGRGKERK 176

Query: 173 RQDISKQLESNPDNSIVMVKV 193
           RQ +S Q+     + + +VK+
Sbjct: 177 RQRVSDQVSVRRQDRVRLVKM 197


>gi|319408588|emb|CBI82243.1| NADH dehydrogenase I chain J [Bartonella schoenbuchensis R1]
          Length = 190

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/190 (42%), Positives = 116/190 (61%), Gaps = 5/190 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            ++S+  VV  RNP++SV  LI AF NAA LF+LLGAEF+ +I LVVYVGAV V FLF++
Sbjct: 1   MLVSAVTVVAARNPVHSVLFLILAFFNAAALFVLLGAEFLGLILLVVYVGAVAVLFLFVV 60

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-----GELSRLVFKGN 129
           MMLD+D    +    R      FIG++    ++       FS        +    + +  
Sbjct: 61  MMLDVDFAELKSGVLRYIPVGAFIGVVIVVELISVFISSHFSPVLRSYVTQPMPDLAQRT 120

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
           N + +G +LYT Y +  +I+G ILL++MIGAIVL LRH+  +KRQ I+ Q+     ++I 
Sbjct: 121 NTQALGDILYTDYIFYFQIAGMILLVAMIGAIVLTLRHKSGVKRQSIAVQVARTAKSAIE 180

Query: 190 MVKVKSGKGI 199
           + +V+SGKGI
Sbjct: 181 IKQVESGKGI 190


>gi|149184626|ref|ZP_01862944.1| NADH dehydrogenase I, J subunit [Erythrobacter sp. SD-21]
 gi|148831946|gb|EDL50379.1| NADH dehydrogenase I, J subunit [Erythrobacter sp. SD-21]
          Length = 206

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 117/203 (57%), Gaps = 6/203 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++ FY+F+ + I S+ +V+T RNP++SV  LI AF NAAGL +L+GAEF+AM+ ++VY
Sbjct: 2   IQTIAFYMFAVLVIASAVMVITARNPVHSVLWLILAFFNAAGLMVLVGAEFIAMLLVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA-----SNFMVFSA 117
           VGAV V FLF++MMLDIDI        +       I ++    +V          M    
Sbjct: 62  VGAVAVLFLFVVMMLDIDIAAMRAGFVKNAPLGLVIALVLLAELVLGVGAYRVGVMELGT 121

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK-RQDI 176
                      +N   IG +LYT+Y +  E +G ILL++MIGAIVL  R  +  +  QDI
Sbjct: 122 PMASEAPAMMESNTGAIGALLYTKYLFLFEAAGIILLVAMIGAIVLTHRPPKTTRGHQDI 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            KQ   NPD + VM +   G+G+
Sbjct: 182 GKQNRRNPDEATVMKQPIVGEGV 204


>gi|11466532|ref|NP_044781.1| NADH dehydrogenase subunit 6 [Reclinomonas americana]
 gi|2258362|gb|AAD11896.1| NADH dehydrogenase subunit 6 [Reclinomonas americana]
          Length = 205

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 116/203 (57%), Gaps = 11/203 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ + FY FSF+A+ S+ LV+   NPI+SV  L+  F + +GLF+L+ AEF+AMI ++
Sbjct: 1   MTVE-ILFYFFSFLALSSATLVIASSNPIHSVLFLVLVFCSTSGLFILIEAEFIAMIFIM 59

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA----------ELIVCAS 110
           VYVGA+ V FLF++MML++ +        R       IG++             + +   
Sbjct: 60  VYVGAIAVLFLFVVMMLNVRLVQFNVNMLRYLPLGGVIGLIFLLELFLIIDSDLIPLFGL 119

Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           N     A  + +  +    NVE IGK+LYT Y Y   +SG ILL++MIGAIVL +  R  
Sbjct: 120 NINNNIAPFQWADTIDSITNVEAIGKLLYTHYFYLFLVSGMILLVAMIGAIVLTMYKRVG 179

Query: 171 IKRQDISKQLESNPDNSIVMVKV 193
           ++RQDI++QL  +   +I +   
Sbjct: 180 VRRQDINEQLSRDFKETIRLTSP 202


>gi|94502583|ref|YP_588429.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays]
 gi|40795022|gb|AAR91066.1| NADH dehydrogenase subunit 6 [Zea mays]
          Length = 220

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 11/193 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSFALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLILLGLDFFAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM +I I        R    S  IG++   E+     N  +       +  
Sbjct: 61  IAVLFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLKYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNS 187
           D+ ++   +   +
Sbjct: 181 DVFRRNALDFRRT 193


>gi|332528760|ref|ZP_08404737.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Hylemonella
           gracilis ATCC 19624]
 gi|332041826|gb|EGI78175.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Hylemonella
           gracilis ATCC 19624]
          Length = 217

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 126/203 (62%), Gaps = 12/203 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++ FF+LFS + +I++  VVT RNP+++V  L+ AF  A+ ++LLL AEF+A+  ++
Sbjct: 1   MDVKTGFFFLFSAVLLIAALRVVTARNPVHAVLFLMLAFSQASAIWLLLQAEFLAVALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117
           VY+GAV+V FLF++MMLDI I+    + ++GF     + +L   ++V     ++ +    
Sbjct: 61  VYLGAVMVLFLFVVMMLDIRID----QLRQGFWKHLPLALLLGGIVVVEMAAVLLTGFDM 116

Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  +L   V + +N + +G +LYT+Y +P++I+  ILL++MI AI L LR R+D K
Sbjct: 117 VDPQVAAQLPAGVAEESNAKALGILLYTRYVWPIQIAAAILLVAMIAAIALTLRARKDSK 176

Query: 173 RQDISKQLESNPDNSIVMVKVKS 195
             D S Q+     + + +VKV+ 
Sbjct: 177 AIDPSIQVRVRAADRLQLVKVEP 199


>gi|114151645|ref|YP_740422.1| NADH dehydrogenase subunit 6 [Zea mays subsp. parviglumis]
 gi|1843454|emb|CAA66370.1| mitochondrial complex I subunit 6 [Zea mays]
 gi|93116052|gb|ABE98685.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays]
 gi|93116096|gb|ABE98728.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays]
 gi|93116144|gb|ABE98775.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays]
 gi|102567978|gb|ABF70862.1| NADH dehydrogenase subunit 6 [Zea mays subsp. parviglumis]
 gi|102579645|gb|ABF70925.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays]
          Length = 220

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 11/187 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM +I I        R    S  IG I   E+     N  +       +  
Sbjct: 61  IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLKYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLE 181
           D+ ++  
Sbjct: 181 DVFRRNA 187


>gi|326316108|ref|YP_004233780.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372944|gb|ADX45213.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 222

 Score =  164 bits (415), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 80/205 (39%), Positives = 125/205 (60%), Gaps = 8/205 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F V+T RNP+++V  LI AF  AA ++LLL AEF+A+  ++
Sbjct: 1   MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113
           VY+GAV+V FLF++MMLDI I+       R F  + FIG L A  +              
Sbjct: 61  VYLGAVMVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEP 120

Query: 114 -VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
              +A  + +  V + +N + +GK+LYT+Y YP+EI+  ILL++MI AI L LR R+D K
Sbjct: 121 KAVAAMVDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTK 180

Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197
              +S+Q+     + + +VKV + +
Sbjct: 181 VTKVSEQVRVRAADRVALVKVAATQ 205


>gi|296136697|ref|YP_003643939.1| hypothetical protein Tint_2259 [Thiomonas intermedia K12]
 gi|295796819|gb|ADG31609.1| hypothetical protein Tint_2259 [Thiomonas intermedia K12]
          Length = 219

 Score =  164 bits (415), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 118/205 (57%), Gaps = 10/205 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYLFS + + ++  V+T RNP++S   L+ AF   + ++LLL AEF+A++ ++
Sbjct: 11  MDVQTILFYLFSAVLLFAALRVITARNPVHSALYLVLAFFQMSAIWLLLRAEFLAIVLVL 70

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA----------S 110
           VYVGAV+V FLF++MMLDI+++       R F  +  +G+L    +             +
Sbjct: 71  VYVGAVMVLFLFVVMMLDINLDSIRKGFWRYFPVAALVGVLIVLEMAAVLMQGFQIGGMT 130

Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                 A       +   +N   +G VLY+QY + +EI+  ILL+++I AI L LR R+D
Sbjct: 131 RAAQVGAAASADNPLTHLSNTRALGVVLYSQYLFAVEIAAVILLVAIIAAIALTLRRRKD 190

Query: 171 IKRQDISKQLESNPDNSIVMVKVKS 195
           ++    S+Q+++   + + +V + +
Sbjct: 191 VRHMPASEQIKARRADRVRLVSMPA 215


>gi|114707378|ref|ZP_01440275.1| NADH dehydrogenase subunit J [Fulvimarina pelagi HTCC2506]
 gi|114537259|gb|EAU40386.1| NADH dehydrogenase subunit J [Fulvimarina pelagi HTCC2506]
          Length = 205

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 82/189 (43%), Positives = 120/189 (63%), Gaps = 5/189 (2%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           + S+ +VV  +NP++SV  LI  FV AAGLFLL GAEF+A+I +VVYVGAV + FLF++M
Sbjct: 17  VGSALMVVLAKNPVHSVLFLILTFVAAAGLFLLAGAEFLALILIVVYVGAVAILFLFVVM 76

Query: 76  MLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK----GNN 130
           MLD+D+   + R  +    G+    +L AELI+  S  +        + L        +N
Sbjct: 77  MLDLDVGQLKSRAIQYAPFGAIIAVLLLAELIIAGSGTIADPVLASQTALPMAEAGGASN 136

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190
           +E +G VLYT+Y    +++G IL ++MIGAIVL LRH+  ++RQ I  Q+  NP  SI +
Sbjct: 137 IEALGNVLYTRYILFFQLAGLILFVAMIGAIVLTLRHKEKVRRQSIPDQVARNPSTSIEV 196

Query: 191 VKVKSGKGI 199
            +V+SG+GI
Sbjct: 197 KQVESGRGI 205


>gi|121609753|ref|YP_997560.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Verminephrobacter eiseniae EF01-2]
 gi|121554393|gb|ABM58542.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Verminephrobacter eiseniae EF01-2]
          Length = 223

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 121/204 (59%), Gaps = 9/204 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++ FFYLFS + + ++F V+T RNP+++V  LI AF  AA ++LLL AEF+A+  ++
Sbjct: 1   MDAKTGFFYLFSVVLLFAAFRVITARNPVHAVLYLILAFSQAAAVWLLLKAEFLAITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VY+GAV+V FLF++MMLDI I+       + F  +  +G L A  +         + +  
Sbjct: 61  VYLGAVMVLFLFVVMMLDIHIDSLRRGFWKHFPLAASVGALIALEMAAVLMGGFRATDEP 120

Query: 119 -------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                   + +  +   +N + +GK+LYT+Y +P+EI+  ILL++MI AI L LR R+D 
Sbjct: 121 KAGVAIADDAAGQLLAYSNSKALGKLLYTEYLFPVEIAAVILLVAMIAAIALTLRQRKDS 180

Query: 172 KRQDISKQLESNPDNSIVMVKVKS 195
           K  D + Q+     + + +V++ +
Sbjct: 181 KAIDAAAQIRVRASDRLELVRMAA 204


>gi|329889340|ref|ZP_08267683.1| NADH-quinone oxidoreductase subunit J [Brevundimonas diminuta ATCC
           11568]
 gi|328844641|gb|EGF94205.1| NADH-quinone oxidoreductase subunit J [Brevundimonas diminuta ATCC
           11568]
          Length = 207

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 89/201 (44%), Positives = 131/201 (65%), Gaps = 4/201 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ L FYL + +A++S+ LVVT RNP++SV  LI  F +AAGLF+LL AEF+AM+ +VVY
Sbjct: 1   MQGLAFYLLATVAVVSALLVVTARNPVHSVLWLILTFFSAAGLFVLLSAEFLAMLLVVVY 60

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V FLF++MMLD+D +++ E   +   L     G+L AE+I+ +   +   A  + 
Sbjct: 61  VGAVAVLFLFVVMMLDVDFVKLREGYARYLPLAGIVAGVLLAEMIMVSITVVQGGAARDA 120

Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           +  V  G    N+E IG+VLYT Y Y  + +G +LL++MIGAIVL LRHR  + RQD++ 
Sbjct: 121 TSPVPAGPDVTNIETIGRVLYTDYVYFFQAAGVVLLIAMIGAIVLTLRHRPGVHRQDLAA 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q       ++ +  V +G+G+
Sbjct: 181 QANRERAKAVEIKSVTTGQGV 201


>gi|224824814|ref|ZP_03697921.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Lutiella
           nitroferrum 2002]
 gi|224603307|gb|EEG09483.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Lutiella
           nitroferrum 2002]
          Length = 214

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 114/199 (57%), Gaps = 2/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ S + I +   V+T +NP+++   L+ AF  +AG +LLL +EF+A+  ++
Sbjct: 1   MSFPTVVFYVLSAILIFAGLRVITAKNPVHAALYLVLAFFTSAGHWLLLESEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI+ E       +    +  +G++     +++  S      + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINFEKLREGFWKNAPLAGTVGLIMVGEMVLILMSPEASLGSY 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              + L    +N+  +G+++YT Y +P E++  +LL+ M+ AI L +R R+D K  +   
Sbjct: 121 KGAAPLAADASNIRELGRLIYTTYLWPFELAAVVLLVGMVAAIALTMRKRKDTKFVNPGD 180

Query: 179 QLESNPDNSIVMVKVKSGK 197
           Q+    D+ + +VK+ + K
Sbjct: 181 QVVVRRDDRVRLVKMAAVK 199


>gi|298291837|ref|YP_003693776.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Starkeya
           novella DSM 506]
 gi|296928348|gb|ADH89157.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Starkeya
           novella DSM 506]
          Length = 201

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 126/201 (62%), Gaps = 2/201 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +LFFYLF+ +A+ S+F+V+  RNP++SV  LI  FVNA+GLF+L+GAE++AM+ +V
Sbjct: 1   MSLAALFFYLFAGVAVASAFMVIASRNPVHSVLFLILTFVNASGLFILIGAEYLAMLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SAE 118
           VYVGAV V FLF++MMLD+D         +       +G++    +V       F     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGVLVGLVFLAELVLVLGTWTFGEGVT 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G ++      +N   IG+VLYT Y +  + +G ILL++MIGAIVL LRH+ ++KRQ +  
Sbjct: 121 GAVASAAPGASNAVQIGRVLYTDYVFFFQAAGLILLVAMIGAIVLTLRHKENVKRQSVPV 180

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q       +I +VKV SGKG+
Sbjct: 181 QNARTKAMAIDVVKVPSGKGL 201


>gi|117926900|ref|YP_867517.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Magnetococcus sp. MC-1]
 gi|117610656|gb|ABK46111.1| NADH dehydrogenase subunit J [Magnetococcus sp. MC-1]
          Length = 196

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/194 (37%), Positives = 117/194 (60%), Gaps = 2/194 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FYL + + ++++  V+T +NP+ SV  L+ AF  AAGLFLL+ AEF+A+I ++VY+G
Sbjct: 4   DVVFYLLAAIMLVAALRVITAKNPVSSVMFLVLAFFTAAGLFLLIEAEFLAVILVMVYMG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV + FLF++MMLD+D  +     +        I + A  L   A+       E   + +
Sbjct: 64  AVAILFLFVVMMLDVDFALLRQGARDHLP--LGIAVGAVVLFEFAAVASSIHPEQHGAVV 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
               NN   IGK+LYT+Y +P E++  ILL+++IGA+ L  R R +++ Q+I  Q+    
Sbjct: 122 GENVNNTLEIGKILYTKYLFPFEVASLILLVALIGAVALAHRKRNNVRTQNIPDQIARTR 181

Query: 185 DNSIVMVKVKSGKG 198
           D S+ + KVKSG+G
Sbjct: 182 DESVALKKVKSGEG 195


>gi|38638285|ref|NP_943690.1| NADH dehydrogenase subunit 6 [Chara vulgaris]
 gi|32966599|gb|AAP92182.1| NADH dehydrogenase subunit 6 [Chara vulgaris]
          Length = 200

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 11/198 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F +FS +A++S  +V+  RNP++SV  LI  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFSIFSSIALVSGVMVIRARNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V FLF++MML+I I        R       IG++   E+ +   N  +     ELS  
Sbjct: 62  IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGLIFLLEIFLVVDNDYIPILPTELSTT 121

Query: 125 VFK----------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           VF+            N+E +G +LYT Y Y   +S  ILL++MIGAIVL +     +KRQ
Sbjct: 122 VFQYTVYASKIQSWTNLETLGNLLYTTYFYLFLVSSLILLVAMIGAIVLTMHKTTQVKRQ 181

Query: 175 DISKQLESNPDNSIVMVK 192
           D+ +Q   +   +I  ++
Sbjct: 182 DVFQQNMIDFQKTIKKIR 199


>gi|239816474|ref|YP_002945384.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax
           paradoxus S110]
 gi|239803051|gb|ACS20118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax
           paradoxus S110]
          Length = 218

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/194 (35%), Positives = 119/194 (61%), Gaps = 1/194 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++  FYLF+ + + ++F V+T RNP+Y+   L+ AF  A+ ++LLL AEF+A+  ++
Sbjct: 1   MDVKTGLFYLFAAVLLFAAFRVITARNPVYAALYLVLAFFQASAIWLLLRAEFLAISLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLDI+++ + +   K   L +    ++A E+           A  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVDGLRQGFWKHFPLAAGVGALIALEMAAVLMGGFRLEAPR 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             +     G+N   +GK+LY++Y YPLEI+  ILL++++ AI L LR R+D K  + S Q
Sbjct: 121 AGAAAAAHGSNTLELGKLLYSEYLYPLEIAAVILLVAIVAAIALTLRTRKDSKYVNPSDQ 180

Query: 180 LESNPDNSIVMVKV 193
           +     + + +V++
Sbjct: 181 VRVKARDRVRIVQM 194


>gi|157826242|ref|YP_001493962.1| NADH dehydrogenase subunit J [Rickettsia akari str. Hartford]
 gi|157800200|gb|ABV75454.1| NADH dehydrogenase subunit J [Rickettsia akari str. Hartford]
          Length = 205

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N IYSV  LIF F+N AGL +LLGAEF+AMI +V+YVGA
Sbjct: 3   IFFYLFATLITISSLCVVLSKNSIYSVLCLIFTFINGAGLMILLGAEFLAMILIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122
           V V FLF+IMMLD+       + K     S FI ++      +I+      +  +     
Sbjct: 63  VAVLFLFVIMMLDMHFNKTITQLKENLALSIFIALIMFCDLIIIILLGTKNINFSSDISF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N + IG VLYT +  P +++G IL ++MI  I L L+ R  +K QDI+KQL  
Sbjct: 123 AITNNISNTKAIGNVLYTNFMLPFQMAGLILFVAMIACITLTLKKREGVKHQDITKQLSH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N  N ++M K    KG+
Sbjct: 183 NKGNVVLMTKPTLNKGV 199


>gi|54298763|ref|YP_125132.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str.
           Paris]
 gi|296108423|ref|YP_003620124.1| NADH dehydrogenase I chain J [Legionella pneumophila 2300/99 Alcoy]
 gi|53752548|emb|CAH13980.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str.
           Paris]
 gi|295650325|gb|ADG26172.1| NADH dehydrogenase I chain J [Legionella pneumophila 2300/99 Alcoy]
          Length = 219

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 112/213 (52%), Gaps = 20/213 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+F+ + ++S+ +V++  NP+  V  L+  F  +A L++L  AEF+A+I ++VYVG
Sbjct: 7   QAIFYIFALLTVLSALMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------- 109
           AV+  FLF++MML+IDIE  +    +       I  L   L++ A               
Sbjct: 67  AVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALLTGLLMVAIPKDLFKNSVQIQEK 126

Query: 110 -----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                S  M  S + EL       +N E +G VLYT Y    EI+  ILL++++ AI L+
Sbjct: 127 PLSVSSQLMDLSTQDELVPPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLV 186

Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
            R     KRQDI++Q+ +     + ++ +KS K
Sbjct: 187 HRGAIRSKRQDITQQIMTRRAERVKLISMKSEK 219


>gi|148361093|ref|YP_001252300.1| NADH dehydrogenase I subunit J [Legionella pneumophila str. Corby]
 gi|148282866|gb|ABQ56954.1| NADH dehydrogenase I, J subunit [Legionella pneumophila str. Corby]
          Length = 219

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 112/213 (52%), Gaps = 20/213 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+F+ + ++S+ +V++  NP+  V  L+  F  +A L++L  AEF+A+I ++VYVG
Sbjct: 7   QAIFYIFALLTVLSALMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------- 109
           AV+  FLF++MML+IDIE  +    +       I  L   L++ A               
Sbjct: 67  AVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALLTGLLMVAIPKDIFKNSVQIQEK 126

Query: 110 -----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                S  M  S + EL       +N E +G VLYT Y    EI+  ILL++++ AI L+
Sbjct: 127 PLSVSSQLMDLSTQDELVPPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLV 186

Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
            R     KRQDI++Q+ +     + ++ +KS K
Sbjct: 187 HRGAIRSKRQDITQQIMTRRAERVKLISMKSEK 219


>gi|190571385|ref|YP_001975743.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357657|emb|CAQ55101.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 195

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/196 (41%), Positives = 133/196 (67%), Gaps = 8/196 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            FFY F+ ++I+S+  V++VRNP+++V  LIF FVN+A LF+LLGAEF+AM+ ++VY+GA
Sbjct: 3   FFFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVMIVYIGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V V FLF++MMLDID      R ++GF     +G +   +     +F++ S+   +S ++
Sbjct: 63  VAVLFLFVVMMLDIDY----IRLRQGFAKHCTLGAMLCVVFFLVISFVIRSSAPNISNVI 118

Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESN 183
            +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+  ++ +K+Q++ KQL   
Sbjct: 119 NYNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQL--T 176

Query: 184 PDNSIVMVKVKSGKGI 199
             +S+ +VK K GKG+
Sbjct: 177 QSSSVKLVKAKFGKGV 192


>gi|319898891|ref|YP_004158984.1| NADH dehydrogenase I chain J [Bartonella clarridgeiae 73]
 gi|319402855|emb|CBI76406.1| NADH dehydrogenase I chain J [Bartonella clarridgeiae 73]
          Length = 206

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/202 (44%), Positives = 127/202 (62%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +   FFY+F+F+ +IS+ +VV+ RNP++SV  LI AF NAA LFLL GAEF+ +I LVVY
Sbjct: 5   LAVAFFYIFAFIMLISAVIVVSARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V FLF++MMLD+D    +    +      FIG++ A  ++       FS   E+ 
Sbjct: 65  VGAVAVLFLFVVMMLDVDFAELKSGALKYAPIGAFIGVIIAIELIFVFINNRFSPISEIH 124

Query: 123 RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
                       N + +G +LYT Y +  EISG ILL++MIGAI+L LRHR  +KRQ ++
Sbjct: 125 VTQPTSDSTQRTNTQALGDILYTDYVFYFEISGLILLVAMIGAIILTLRHRSGVKRQSVA 184

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+    +N+I + KV+SGKGI
Sbjct: 185 VQVARTAENAIEIKKVESGKGI 206


>gi|165933782|ref|YP_001650571.1| NADH:ubiquinone oxidoreductase subunit J [Rickettsia rickettsii
           str. Iowa]
 gi|165908869|gb|ABY73165.1| NADH-quinone oxidoreductase chain J [Rickettsia rickettsii str.
           Iowa]
          Length = 205

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122
           V + FL +IMMLD+       + K     S FI ++      +I+      +        
Sbjct: 63  VALLFLSVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N + IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISKQL  
Sbjct: 123 TITNNISNTKAIGSVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLRH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N +N+++M K    KG+
Sbjct: 183 NKENTVLMTKPILNKGV 199


>gi|316996025|dbj|BAD83537.2| NADH dehydrogenase subunit 6 [Nicotiana tabacum]
          Length = 228

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV  LI  F N +GL LLLG +F AMI  VVY+GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFLIPVFRNTSGLLLLLGLDFFAMIFPVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG+L   E+     N  +     + +  
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLLFWWEMFFILDNESIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNALDSRRTI 194


>gi|237746742|ref|ZP_04577222.1| predicted protein [Oxalobacter formigenes HOxBLS]
 gi|229378093|gb|EEO28184.1| predicted protein [Oxalobacter formigenes HOxBLS]
          Length = 220

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 113/196 (57%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++ FY F+ +  +++  VVT RNP+++V  L+ +F   A L++LL AEF+A+I L+
Sbjct: 1   MEFETVLFYAFAAILTLAALRVVTSRNPVHAVLYLVLSFFTGAALWILLKAEFLALILLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MM+DI++   +   ++    + F+G L    +        F+ +  
Sbjct: 61  VYVGAVMVLFLFVVMMMDIELGELKRIARKNLALALFVGGLIVLEMSAVIFRGFFALDLH 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                 +      IGK L+T Y + +EI+  ILL+++I A+ L +R R D +    S  +
Sbjct: 121 APDDASRIGLTSEIGKALFTDYLFSVEIAAIILLVALIAAVTLTIRRRSDARYTSASVAI 180

Query: 181 ESNPDNSIVMVKVKSG 196
              P++ + +V++K+ 
Sbjct: 181 RVRPEDRLRVVEMKAE 196


>gi|67459647|ref|YP_247271.1| NADH dehydrogenase subunit J [Rickettsia felis URRWXCal2]
 gi|75535957|sp|Q4UK29|NUOJ_RICFE RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|67005180|gb|AAY62106.1| NADH dehydrogenase I chain J [Rickettsia felis URRWXCal2]
          Length = 205

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS--- 122
           V V FLF+IMMLD+       + K     S FI ++    +V        +         
Sbjct: 63  VAVLFLFVIMMLDMHFNKTITQLKENLALSSFIALIMFADLVTIILLGTKNINFISDVSF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N + IGKVLYT +  P +++G IL ++MI  I L L+ R  +K QDI+KQL  
Sbjct: 123 TITNDISNTKAIGKVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKHQDITKQLSH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N  N ++M K    KG+
Sbjct: 183 NKSNVVLMTKPTLNKGV 199


>gi|51473958|ref|YP_067715.1| NADH dehydrogenase subunit J [Rickettsia typhi str. Wilmington]
 gi|81610752|sp|Q68VV9|NUOJ_RICTY RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|51460270|gb|AAU04233.1| NADH dehydrogenase (ubiquinone) subunit J [Rickettsia typhi str.
           Wilmington]
          Length = 205

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ + IISS  VV  +N +YSV  LIF F+NAAGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFTFINAAGLMILLGAEFLAMLLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122
           V V FLF+IMMLDI+   A  + +     S FI ++      + V  S   +  +     
Sbjct: 63  VAVLFLFVIMMLDINFNQAITKLRENLSLSIFITLIMFVDLVITVILSTKNINHSSNISF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N + IG VLYT +  P +++G IL ++MI  I L L+ R  +K QDI KQL  
Sbjct: 123 AIANNISNTKAIGSVLYTDFMLPFQMAGLILFVAMISCITLTLKKRERVKYQDIRKQLSH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N  N I+M K    KG+
Sbjct: 183 NKGNVILMTKPILNKGV 199


>gi|225631322|ref|ZP_03787996.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590973|gb|EEH12181.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 195

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/196 (41%), Positives = 133/196 (67%), Gaps = 8/196 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            FFY F+ ++I+S+  V++VRNP+++V  LIF FVN+A LF+LLGAEF+AM+ ++VY+GA
Sbjct: 3   FFFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVMIVYIGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V V FLF++MMLDID      R ++GF     +G +   +     +F++ S+   +S ++
Sbjct: 63  VAVLFLFVVMMLDIDY----IRLRQGFAKHCTLGAMLCVVFFLVISFVIRSSAPNISNVI 118

Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESN 183
            +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+  ++ +K+Q++ KQL   
Sbjct: 119 NYNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQL--T 176

Query: 184 PDNSIVMVKVKSGKGI 199
             +S+ ++K K GKG+
Sbjct: 177 QSSSVKLIKAKFGKGV 192


>gi|157829056|ref|YP_001495298.1| NADH dehydrogenase subunit J [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801537|gb|ABV76790.1| NADH dehydrogenase subunit J [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 205

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISS  VV  +N +YSV  LIFAF+N AGL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122
           V + FL +IMMLD+       + K     S FI ++      +I+      +        
Sbjct: 63  VALLFLSVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N + IG VLYT +  P +++G IL ++MI  I L L+ R  +KRQDISKQL  
Sbjct: 123 TITNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLRH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N +N+++M K    KG+
Sbjct: 183 NKENTVLMTKPILNKGV 199


>gi|186476755|ref|YP_001858225.1| NADH dehydrogenase subunit J [Burkholderia phymatum STM815]
 gi|184193214|gb|ACC71179.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           phymatum STM815]
          Length = 222

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 123/207 (59%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ +  +S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MDFTTVLFYIFALLLTVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDVLRRDFKRFVPMATVVG----AIIVIETALILWHGYGA 116

Query: 121 LSRLV----------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             + V             +N   IGK++YT Y +  E++G +LL+++I AI L  RH +D
Sbjct: 117 TVQPVRDTTAAVAGAADWSNTRLIGKIIYTDYIFAFEVAGLVLLVAIIAAIALTTRHGKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ +S Q++   ++ + +VK+ + K
Sbjct: 177 SKRQRVSDQVKVRREDRVRVVKMAAEK 203


>gi|157804159|ref|YP_001492708.1| NADH dehydrogenase subunit J [Rickettsia canadensis str. McKiel]
 gi|157785422|gb|ABV73923.1| NADH dehydrogenase subunit J [Rickettsia canadensis str. McKiel]
          Length = 205

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 119/197 (60%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ +  ISSF VV  +N +YSV  LIFAF+N + L +LLGAEF+AMI +V+YVGA
Sbjct: 3   IFFYLFATLITISSFCVVLNKNSVYSVLWLIFAFLNGSSLMILLGAEFLAMILIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122
           V V FLF+IMMLD+    A  + K     S  I ++      +I+      +  +   L 
Sbjct: 63  VAVLFLFVIMMLDMHFNKAITQLKENLTLSILISLIMFADLVIIILLGTKNINFSSDILF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                 +N + IG +LYT +  P +++G IL ++MI  IVL LR R  IKRQDI KQL  
Sbjct: 123 ATTNNISNTKAIGNILYTDFMIPFQMAGLILFVAMISCIVLTLRKREGIKRQDILKQLSH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N +N+++M K    KGI
Sbjct: 183 NKENAVLMTKPLLNKGI 199


>gi|54295609|ref|YP_128024.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str.
           Lens]
 gi|53755441|emb|CAH16937.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str.
           Lens]
          Length = 219

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 20/213 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+F+ + ++S+ +V++  NP+  V  L+  F  +A L++L  AEF+A+I ++VYVG
Sbjct: 7   QAIFYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWILAEAEFLALILILVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------- 109
           AV+  FLF++MML+IDIE  +    +       I  L   L++ A               
Sbjct: 67  AVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALFTGLLMVAIPKDLFKNSVQTQEK 126

Query: 110 -----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                S  M  S E  L       +N E +G VLYT Y    EI+  ILL++++ AI L+
Sbjct: 127 PLSVNSQLMDLSTEDGLVTPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLV 186

Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
            R     KRQDI++Q+ +     + ++ +KS K
Sbjct: 187 HRGAIRSKRQDITQQIMTRRAERVKLISMKSEK 219


>gi|294340852|emb|CAZ89247.1| putative NADH-quinone oxidoreductase chain J (NADH dehydrogenase I,
           chain J) (NDH-1, chain J) (NuoJ) [Thiomonas sp. 3As]
          Length = 209

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 118/205 (57%), Gaps = 10/205 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q++ FYLFS + + ++  V+T RNP++S   L+ AF   + ++LLL AEF+A++ ++
Sbjct: 1   MDVQTILFYLFSAVLLFAALRVITARNPVHSALYLVLAFFQMSAIWLLLRAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA----------S 110
           VYVGAV+V FLF++MMLDI+++       R F  +  +G+L    +             +
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDSIRKGFWRYFPVAALVGVLIVLEMAAVLMQGFQIGGMT 120

Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                 A       +   +N   +G VLY+QY + +EI+  ILL+++I AI L LR R+D
Sbjct: 121 RAAQVGAAASADNPLTHLSNTRALGVVLYSQYLFAVEIAAVILLVAIIAAIALTLRRRKD 180

Query: 171 IKRQDISKQLESNPDNSIVMVKVKS 195
           ++    S+Q+++   + + +V + +
Sbjct: 181 VRHMPASEQIKARRADRVRLVSMPA 205


>gi|58696815|ref|ZP_00372343.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225630632|ref|YP_002727423.1| NADH dehydrogenase I, J subunit [Wolbachia sp. wRi]
 gi|58536985|gb|EAL60140.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592613|gb|ACN95632.1| NADH dehydrogenase I, J subunit [Wolbachia sp. wRi]
          Length = 195

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 8/196 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            FFY FS ++I+S+  V++VRNP+++V  LIF FVN+A LF+LLGAEF+AM+ L+VY+GA
Sbjct: 3   FFFYFFSILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVLIVYIGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V V FLF++MMLDID      R ++GF   F +G +   +     +F++ S+   +S ++
Sbjct: 63  VAVLFLFVVMMLDIDY----IRLRQGFAKHFTLGAILCVVFFLVISFVIRSSTLNISNVI 118

Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESN 183
            +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+  ++ IKRQ++ KQL   
Sbjct: 119 NYNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGIKRQNVLKQL--T 176

Query: 184 PDNSIVMVKVKSGKGI 199
             +S+ +VK K GKG+
Sbjct: 177 QSSSVKLVKAKFGKGV 192


>gi|111220508|ref|YP_711302.1| NADH dehydrogenase subunit J [Frankia alni ACN14a]
 gi|111148040|emb|CAJ59706.1| NADH dehydrogenase (quinone) [Frankia alni ACN14a]
          Length = 358

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 98/199 (49%), Gaps = 2/199 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             ++  F++ + +A++++  +V VR+ ++    L+      A  +L+  A F+  + ++V
Sbjct: 18  TGEATVFWILAPIAVLAALGMVFVRSAVHCALLLVANLFCVAVFYLVQQAPFLGFVQIIV 77

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGE 120
           Y GA++V FLF++M++ +D   +     RG  LG+   G+  A L+V      +     +
Sbjct: 78  YAGAIMVLFLFVLMLVGVDSSDSLVETIRGQRLGAAIFGLGFAGLLVFPIGSAIDGETAK 137

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                 +G NV+ IG++L++ Y +  E    +L+++ IG +VL  R R    R D  +++
Sbjct: 138 GLDTPNEGGNVQAIGRLLFSDYVFVFEAVSALLVVAAIGTMVLGHREREG-GRVDQRERM 196

Query: 181 ESNPDNSIVMVKVKSGKGI 199
                     +    G G+
Sbjct: 197 RRRFAEPGRQLTPLPGPGV 215


>gi|57014000|ref|YP_173471.1| NADH dehydrogenase subunit 6 [Nicotiana tabacum]
          Length = 228

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV  LI  F N +GL LLLG +F AMI  VVY+GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFLIPVFRNTSGLLLLLGLDFFAMIFPVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG+L   E+     N  +     + +  
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLLFWWEMFFILDNESIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNALDSRRTI 194


>gi|42520778|ref|NP_966693.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410518|gb|AAS14627.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 195

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 84/196 (42%), Positives = 134/196 (68%), Gaps = 8/196 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            FFY F+ ++I+S+  V++VRNP+++V  LIF FVN+A LF+LLGAEF+AM+ L+VY+GA
Sbjct: 3   FFFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVLIVYIGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V V FLF++MMLDID      R ++GF   F +G +   +     +F++ S+   +S ++
Sbjct: 63  VAVLFLFVVMMLDIDY----IRLRQGFAKHFTLGAILCGVFFLIISFVIRSSTLNISNVI 118

Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESN 183
            +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+  ++ +K+Q++ KQL   
Sbjct: 119 NYNANNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQL--T 176

Query: 184 PDNSIVMVKVKSGKGI 199
             +S+ +VK K GKG+
Sbjct: 177 QSSSVKLVKAKFGKGV 192


>gi|15836917|ref|NP_297605.1| NADH dehydrogenase subunit J [Xylella fastidiosa 9a5c]
 gi|9105137|gb|AAF83125.1|AE003884_10 NADH-ubiquinone oxidoreductase, NQO10 subunit [Xylella fastidiosa
           9a5c]
          Length = 222

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 117/203 (57%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FYLFS +A+ ++  V++VR+P+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 2   MDWVNIAFYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLDID   + E   +   +G    G++  +++V     M  +   
Sbjct: 62  VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPF 121

Query: 120 ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +     +    +N+  +   L+T + +P E +  IL +++I A++L LR R  +K QD 
Sbjct: 122 PVDNAAAQAAHTSNLTWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
           S+Q      + + +V + + + +
Sbjct: 182 SQQTRVKAADRLRIVSMPTEEPV 204


>gi|114777370|ref|ZP_01452367.1| NADH dehydrogenase I chain J [Mariprofundus ferrooxydans PV-1]
 gi|114552152|gb|EAU54654.1| NADH dehydrogenase I chain J [Mariprofundus ferrooxydans PV-1]
          Length = 194

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 115/193 (59%), Gaps = 2/193 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++++FF LF+ ++++S   VV  RN ++SV  LIF F NAAGLF LL AEF+ +I +++Y
Sbjct: 2   LETVFFNLFAGLSVLSGMGVVLARNTMHSVMFLIFCFFNAAGLFFLLDAEFIGIIMILIY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGE 120
           VGAV+V F F++MML+I+         +       + I+     + A+   VFS  A   
Sbjct: 62  VGAVMVLFTFVVMMLEINTARMREGFLQYLPLGGLVAIVLLVEFISAAVSGVFSSGAMAT 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
              L    NN   IG+VLYT+Y    EI+  ILL+++IGAIVL LR R+D K Q I+ Q+
Sbjct: 122 ADHLPQSVNNTVEIGQVLYTKYLLGFEIAALILLVALIGAIVLTLRTRKDAKYQKIAAQV 181

Query: 181 ESNPDNSIVMVKV 193
               ++ +  V++
Sbjct: 182 GVRKEDRMRKVRM 194


>gi|52842978|ref|YP_096777.1| NADH dehydrogenase I, J subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630089|gb|AAU28830.1| NADH dehydrogenase I, J subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 219

 Score =  160 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 20/213 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+F+ + ++S+ +V++  NP+  V  L+  F  +A L++L  AEF+A+I ++VYVG
Sbjct: 7   QAIFYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------- 109
           AV+  FLF++MML+IDIE  +    +       I  L   L++ A               
Sbjct: 67  AVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALLTGLLMVAIPKDLFKNSVQTQEK 126

Query: 110 -----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                S  M  S E  L       +N E +G VLYT Y    EI+  ILL++++ AI L+
Sbjct: 127 PLSVNSQLMDLSTEDGLVTPEKATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLV 186

Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
            R     KRQDI++Q+ +     + ++ +KS K
Sbjct: 187 HRGAIRSKRQDITQQIMTRRAERVKLISMKSEK 219


>gi|158423301|ref|YP_001524593.1| NADH ubiquinone oxidoreductase chain J protein [Azorhizobium
           caulinodans ORS 571]
 gi|158330190|dbj|BAF87675.1| NADH ubiquinone oxidoreductase chain J protein [Azorhizobium
           caulinodans ORS 571]
          Length = 202

 Score =  160 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 93/202 (46%), Positives = 136/202 (67%), Gaps = 3/202 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   + FFYLF+ + + S+F+V++ RNP+YSV  LI AFVNAAGLF+LLG EF+A+I +V
Sbjct: 1   MSFAAAFFYLFACILVGSAFMVISSRNPVYSVLFLILAFVNAAGLFILLGVEFLALILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D +E+ +   +   +G+    I  AEL++    +       
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGAIVGLIFLAELVLVVGTWAAGPGVT 120

Query: 120 ELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
             +  V      N   +G+VLYT Y Y  +I+GF+LL++MIGAIVL LRH+ ++KRQ+IS
Sbjct: 121 VATNAVMTYPRGNTHALGQVLYTDYIYFFQIAGFVLLVAMIGAIVLTLRHKPNVKRQNIS 180

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+   P+ ++ +VKVK G+GI
Sbjct: 181 AQVARTPETAMEVVKVKPGQGI 202


>gi|15604622|ref|NP_221140.1| NADH dehydrogenase subunit J [Rickettsia prowazekii str. Madrid E]
 gi|20139313|sp|Q9ZCG3|NUOJ_RICPR RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|3861317|emb|CAA15216.1| NADH DEHYDROGENASE I CHAIN J (nuoJ) [Rickettsia prowazekii]
 gi|292572439|gb|ADE30354.1| NADH dehydrogenase I chain J [Rickettsia prowazekii Rp22]
          Length = 205

 Score =  160 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 117/197 (59%), Gaps = 3/197 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +FFYLF+ + IISS  VV  +N +YSV  LIF F+N +GL +LLGAEF+AM+ +V+YVGA
Sbjct: 3   IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFTFINGSGLMILLGAEFLAMLLIVIYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS--- 122
           V V FLF+IMMLDI+   A  + +     S FI ++    +V        +     +   
Sbjct: 63  VAVLFLFVIMMLDINFNQAITKLRENLSLSIFITLIMFADLVITIILSTKNINYSSNISF 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +    +N + IG VLYT++  P +I+G IL ++MI  I L L+ R  IK QDI KQL  
Sbjct: 123 AIANNISNTKAIGNVLYTEFMLPFQIAGLILFVAMISCITLTLKKRDRIKHQDIRKQLSH 182

Query: 183 NPDNSIVMVKVKSGKGI 199
           N  N I+M K    KG+
Sbjct: 183 NKSNVILMTKPILNKGV 199


>gi|302383059|ref|YP_003818882.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193687|gb|ADL01259.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 208

 Score =  160 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 128/201 (63%), Gaps = 4/201 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + FYL S +A++S  LVVT RNP++SV  LI AF ++AGLF+LLGAEF+AM+ +VVY
Sbjct: 2   LQGIAFYLLSAVAVVSGLLVVTARNPVHSVLWLILAFFSSAGLFVLLGAEFLAMLLVVVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE- 120
           VGAV V FLF++MMLD+D + + E       L +   G+L AE+++ +   +   A  + 
Sbjct: 62  VGAVAVLFLFVVMMLDVDFVRLREGYATYLPLAAIVAGVLLAEMVMISIVVVQGGAASDA 121

Query: 121 --LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              +      +NVE IG+VLYT Y Y  + +G +LL++MIGAIVL LR +  ++RQD   
Sbjct: 122 VAPAVATADASNVETIGRVLYTDYIYFFQAAGIVLLIAMIGAIVLTLRKKPSVRRQDPGA 181

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           Q   +   S+ +  V +G G+
Sbjct: 182 QTNRDRKTSVEIKGVVTGAGV 202


>gi|307611650|emb|CBX01338.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila 130b]
          Length = 219

 Score =  160 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 20/213 (9%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+F+ + ++S+ +V++  NP+  V  L+  F  +A L++L  AEF+A+I ++VYVG
Sbjct: 7   QAIFYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWILAEAEFLALILILVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------- 109
           AV+  FLF++MML+IDIE  +    +       I  L   L++ A               
Sbjct: 67  AVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALLTGLLMVAIPKDLFKNSVQTQEK 126

Query: 110 -----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                S  M  S E  L       +N E +G VLYT Y    EI+  ILL++++ AI L+
Sbjct: 127 PLSVNSQLMDLSTEDGLVTPKNATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLV 186

Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
            R     KRQDI++Q+ +     + ++ +KS K
Sbjct: 187 HRGAIRSKRQDITQQIMTRRAERVKLISMKSEK 219


>gi|241760703|ref|ZP_04758795.1| NADH dehydrogenase i chain j [Neisseria flavescens SK114]
 gi|241318884|gb|EER55410.1| NADH dehydrogenase i chain j [Neisseria flavescens SK114]
          Length = 223

 Score =  160 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|114151579|ref|YP_740380.1| NADH dehydrogenase subunit 6 [Zea perennis]
 gi|102567913|gb|ABF70830.1| NADH dehydrogenase subunit 6 [Zea perennis]
          Length = 209

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 11/187 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM +I I        R    S  IG++   E+     N  +       +  
Sbjct: 61  IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLKYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLE 181
           D+ ++  
Sbjct: 181 DVFRRNA 187


>gi|91208862|ref|YP_539023.1| NADH dehydrogenase subunit 6 [Physcomitrella patens]
 gi|90991402|dbj|BAE93094.1| NADH dehydrogenase subunit 6 [Physcomitrella patens]
          Length = 201

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 11/198 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F +FS +A++SS +V+  +NP++SV   I  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFSVFSSIALVSSVMVIRAKNPVHSVLFFILVFFNTSGLLVLLGLDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-----------NFMV 114
           + V FLF++MML+I I        R       IG++    I                   
Sbjct: 62  IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGVIFLLEIFFIVDNDYIPILPTKLSTT 121

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +      +  +    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 122 YLTYTVYAEKIQSWTNLETLGNLLYTTYFVLFLVSSLILLVAMIGAIVLTMHKTTQVKRQ 181

Query: 175 DISKQLESNPDNSIVMVK 192
           D+ +Q   +  N+I  ++
Sbjct: 182 DVFRQNAIDFKNTIKKIR 199


>gi|298370370|ref|ZP_06981686.1| NADH dehydrogenase (ubiquinone), J subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281830|gb|EFI23319.1| NADH dehydrogenase (ubiquinone), J subunit [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 223

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELASVLLLLGMVAAIALVHRKTFNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|254805705|ref|YP_003083926.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha14]
 gi|254669247|emb|CBA08121.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha14]
          Length = 223

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|225077028|ref|ZP_03720227.1| hypothetical protein NEIFLAOT_02080 [Neisseria flavescens
           NRL30031/H210]
 gi|224951585|gb|EEG32794.1| hypothetical protein NEIFLAOT_02080 [Neisseria flavescens
           NRL30031/H210]
 gi|325129048|gb|EGC51898.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           N1568]
          Length = 223

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|325267329|ref|ZP_08133991.1| NADH-quinone oxidoreductase subunit J [Kingella denitrificans ATCC
           33394]
 gi|324981266|gb|EGC16916.1| NADH-quinone oxidoreductase subunit J [Kingella denitrificans ATCC
           33394]
          Length = 217

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/198 (33%), Positives = 117/198 (59%), Gaps = 3/198 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FYLF+ + +  +   VT +NP+++   L+  F  +A ++LL+ AEF+ +  +V
Sbjct: 1   MTFQLILFYLFAAVILYGALQTVTAKNPVHAALHLVLTFCASAMMWLLMQAEFLGITLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+ID+E       R    +  +G+L A L++          +  
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDVEEMRQGFWRHAPAALVVGVLMAALLIAIFLAPDTALNQF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    +NV ++GK +YT Y  P E++  +L+L M+ AI L+ R   + KRQD ++
Sbjct: 121 GLMKDIPADYSNVRDLGKQIYTAYLLPFELAAVLLVLGMVAAIALVHRKTNNPKRQDPAE 180

Query: 179 QLESNPD-NSIVMVKVKS 195
           Q++ + D N + +VK++S
Sbjct: 181 QVKVSADKNRMRLVKMES 198


>gi|255067293|ref|ZP_05319148.1| NADH dehydrogenase, J subunit [Neisseria sicca ATCC 29256]
 gi|255048444|gb|EET43908.1| NADH dehydrogenase, J subunit [Neisseria sicca ATCC 29256]
          Length = 223

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 112/200 (56%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT+Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDVPADYNNIRDLGSRIYTEYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|261364358|ref|ZP_05977241.1| NADH dehydrogenase, J subunit [Neisseria mucosa ATCC 25996]
 gi|288567622|gb|EFC89182.1| NADH dehydrogenase, J subunit [Neisseria mucosa ATCC 25996]
          Length = 223

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|313669275|ref|YP_004049559.1| NADH dehydrogenase I chain J [Neisseria lactamica ST-640]
 gi|313006737|emb|CBN88207.1| NADH dehydrogenase I chain J [Neisseria lactamica 020-06]
          Length = 223

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|261400481|ref|ZP_05986606.1| NADH dehydrogenase, J subunit [Neisseria lactamica ATCC 23970]
 gi|269209740|gb|EEZ76195.1| NADH dehydrogenase, J subunit [Neisseria lactamica ATCC 23970]
          Length = 223

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|326387452|ref|ZP_08209061.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208108|gb|EGD58916.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 205

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 122/202 (60%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q+  FYLF+ + I+S  + +  RNP++SV  LI AF NAAGL +L GAEF+AM+ ++VY
Sbjct: 2   IQAFAFYLFATLMIVSGAVTILARNPVHSVLWLILAFFNAAGLMVLAGAEFIAMLLIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-----LAAELIVCASNFMVFSA 117
           VGAV V FLF++MMLDID         R       + +     L   ++V ++  M    
Sbjct: 62  VGAVAVLFLFVVMMLDIDFAELRAGFIRNAPLGVILAVVLFVELFVGILVRSAGDMAIGT 121

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            G  + +    +N   IG +LYT+Y +  E +GFILL++MIGAIVL  R R  ++ Q+I+
Sbjct: 122 AGAATAVPAGLSNTAAIGALLYTRYLFVFEAAGFILLVAMIGAIVLTHRQRSGVRGQNIA 181

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           KQ+   P+ + + ++ + GKG+
Sbjct: 182 KQIARRPEEATINLQPEVGKGV 203


>gi|325131603|gb|EGC54310.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           M6190]
 gi|325139142|gb|EGC61688.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           ES14902]
 gi|325203368|gb|ADY98821.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           M01-240355]
          Length = 223

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|155029063|emb|CAO85827.1| NADH dehydrogenase subunit 6 [Helianthus annuus]
          Length = 309

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYMVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDSRRTI 194


>gi|261379571|ref|ZP_05984144.1| NADH dehydrogenase, J subunit [Neisseria subflava NJ9703]
 gi|284798045|gb|EFC53392.1| NADH dehydrogenase, J subunit [Neisseria subflava NJ9703]
          Length = 223

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++           A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLDAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|296313737|ref|ZP_06863678.1| NADH dehydrogenase, J subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839660|gb|EFH23598.1| NADH dehydrogenase, J subunit [Neisseria polysaccharea ATCC 43768]
          Length = 223

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|325915548|ref|ZP_08177859.1| NADH dehydrogenase subunit J [Xanthomonas vesicatoria ATCC 35937]
 gi|325538264|gb|EGD09949.1| NADH dehydrogenase subunit J [Xanthomonas vesicatoria ATCC 35937]
          Length = 220

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   S+ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 2   MDWVSIAFYAFSAIAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        +A   
Sbjct: 62  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRTATPF 121

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++    E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 122 PVDNAAAQAADSSNLTWLAKSLYTEFLLAFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
           S+Q      + + +VK+   K +
Sbjct: 182 SEQSRVKAGDRLRIVKMAVEKPV 204


>gi|218767057|ref|YP_002341569.1| NADH dehydrogenase I chain J [Neisseria meningitidis Z2491]
 gi|121051065|emb|CAM07335.1| NADH dehydrogenase I chain J [Neisseria meningitidis Z2491]
          Length = 223

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY+F+ + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|163793196|ref|ZP_02187172.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199]
 gi|159181842|gb|EDP66354.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199]
          Length = 204

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 125/204 (61%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+Q+L FYLF+ +A+ S  +V+T RNP++SV  LI AF NAAGLF+L+GAEF+AMI +V
Sbjct: 1   MVVQALVFYLFAAVAVASGAMVITSRNPVHSVLFLILAFFNAAGLFVLMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-----VF 115
           VYVGAV V FLF++MMLDI+         R       IG++    ++  +        + 
Sbjct: 61  VYVGAVAVLFLFVVMMLDINFVELRQGFIRYVPVGAAIGLVLLAELLLITGAWTVAPGIP 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +A G +        N   +G +LYT+Y Y  + +G ILL++MIGAIVL LR R  ++RQ 
Sbjct: 121 NAMGAVIPPAADVTNTHALGGLLYTRYVYLFQAAGLILLIAMIGAIVLTLRSREGVRRQS 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I  Q     ++++ ++KV  G G+
Sbjct: 181 ILVQNARRREDAVEVMKVTRGGGV 204


>gi|261378530|ref|ZP_05983103.1| NADH dehydrogenase, J subunit [Neisseria cinerea ATCC 14685]
 gi|269145080|gb|EEZ71498.1| NADH dehydrogenase, J subunit [Neisseria cinerea ATCC 14685]
          Length = 223

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|254670966|emb|CBA07654.1| NADH-ubiquinone oxidoreductase, chain J [Neisseria meningitidis
           alpha153]
          Length = 223

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/200 (32%), Positives = 112/200 (56%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY+F+ + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|261391784|emb|CAX49239.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J;
           NDH-1, chain J) [Neisseria meningitidis 8013]
          Length = 223

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|15676177|ref|NP_273309.1| NADH dehydrogenase I chain J [Neisseria meningitidis MC58]
 gi|7225476|gb|AAF40707.1| NADH dehydrogenase I, J subunit [Neisseria meningitidis MC58]
 gi|316985181|gb|EFV64133.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis
           H44/76]
 gi|325135056|gb|EGC57684.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis
           M13399]
 gi|325141089|gb|EGC63592.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis CU385]
 gi|325145246|gb|EGC67525.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis M01-240013]
 gi|325145317|gb|EGC67595.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis M01-240013]
 gi|325199456|gb|ADY94911.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis
           H44/76]
          Length = 223

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY+F+ + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFQLILFYIFAVIILYGALKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|71275681|ref|ZP_00651966.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Dixon]
 gi|71897775|ref|ZP_00680001.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Ann-1]
 gi|170729498|ref|YP_001774931.1| NADH dehydrogenase subunit J [Xylella fastidiosa M12]
 gi|182680814|ref|YP_001828974.1| NADH dehydrogenase subunit J [Xylella fastidiosa M23]
 gi|71163572|gb|EAO13289.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Dixon]
 gi|71732330|gb|EAO34384.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Ann-1]
 gi|167964291|gb|ACA11301.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xylella fastidiosa
           M12]
 gi|182630924|gb|ACB91700.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xylella
           fastidiosa M23]
          Length = 221

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 116/203 (57%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FYLFS + + ++  V++VR+P+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVNIAFYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLDID   + E   +   +G    G++  +++V     M  +   
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPF 120

Query: 120 ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +     +    +N+  +   L+T + +P E +  IL +++I A++L LR R  +K QD 
Sbjct: 121 PVDNAAAQAADTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
           S+Q      + + +V + + K I
Sbjct: 181 SQQTRVKSADRLRIVSMPTEKPI 203


>gi|294083720|ref|YP_003550477.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663292|gb|ADE38393.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 201

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 121/195 (62%), Gaps = 2/195 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            ++LFFYLF+ + + S+F+VV  +NP+YSV  LI +F NAAGLF+L+GAEF+AM+ +VVY
Sbjct: 2   FEALFFYLFAGIMLASAFMVVISKNPVYSVLFLILSFFNAAGLFVLIGAEFLAMLLVVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V FLF++MMLDI+        ++       +G +    +V A     F  +G   
Sbjct: 62  VGAVAVLFLFVVMMLDINFAEMRAGFQKYLPLGLIVGGILVFELVAAMYGDAF--KGATL 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
               +  N   +G VLYT+Y Y  +++G ILL++MIGAI L +RHR  ++RQ ++ Q   
Sbjct: 120 PEASEIPNTTRLGGVLYTKYIYLFQVAGLILLVAMIGAISLTMRHRPGVRRQVVANQNMR 179

Query: 183 NPDNSIVMVKVKSGK 197
             D ++ +V V  GK
Sbjct: 180 RRDETVEVVSVPVGK 194


>gi|325143092|gb|EGC65439.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           961-5945]
 gi|325143162|gb|EGC65508.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           961-5945]
 gi|325197537|gb|ADY92993.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           G2136]
          Length = 223

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|11467107|ref|NP_054408.1| NADH dehydrogenase subunit 6 [Marchantia polymorpha]
 gi|585594|sp|P26850|NU6M_MARPO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|404360|gb|AAB27401.1| NADH dehydrogenase subunit 6=nad6 gene product [Marchantia
           polymorpha=liverworts, Peptide Mitochondrial, 199 aa]
 gi|786192|gb|AAC09405.1| nad6 [Marchantia polymorpha]
          Length = 199

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 11/198 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+F  +A++S  +V+  +NP++SV  LI  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFYVFVVLALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-----------NFMV 114
           + V FLF++MML I IE       R       IG++    I                   
Sbjct: 62  IAVLFLFVVMMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILPTKLSAT 121

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +      +  +    N+E +G +LYT Y +   +S  ILL+++IGAIVL +     +KRQ
Sbjct: 122 YLTYTVYAGKIHSWTNLETLGNLLYTTYFFLFLVSSLILLVALIGAIVLTMHKTTKVKRQ 181

Query: 175 DISKQLESNPDNSIVMVK 192
           D+  Q   +  N+I  V+
Sbjct: 182 DVFIQNAIDFQNTIKKVR 199


>gi|78485171|ref|YP_391096.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Thiomicrospira crunogena XCL-2]
 gi|78363457|gb|ABB41422.1| NADH dehydrogenase I chain J [Thiomicrospira crunogena XCL-2]
          Length = 211

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 4/201 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +   FYL + +++ S+ +V++V+NP+ +   L+  F+  AG++L   AEF+ ++ ++
Sbjct: 1   MTFEQFIFYLLAGISVFSALMVISVKNPVKAALWLVLTFIATAGVWLTAQAEFLGLVLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI++   +    R              L+        F  E  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLAQLKEGFTRYLPLGVLAATAIFALMYLVLGPERFGLEQF 120

Query: 121 LSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDI 176
            +     G  +N ++I   LYT + Y   ++  +LL+ ++ AI L LR R  +++  QDI
Sbjct: 121 AAPQSAGGEYSNTKSIAVPLYTTHVYAFILAAVLLLVGIVAAITLTLRRRPPKEVLYQDI 180

Query: 177 SKQLESNPDNSIVMVKVKSGK 197
            KQ+     +   MVK+ + K
Sbjct: 181 DKQVRVQASDRFKMVKMDAVK 201


>gi|28198180|ref|NP_778494.1| NADH dehydrogenase subunit J [Xylella fastidiosa Temecula1]
 gi|28056250|gb|AAO28143.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xylella fastidiosa
           Temecula1]
          Length = 222

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 116/203 (57%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FYLFS + + ++  V++VR+P+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 2   MDWVNIAFYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLDID   + E   +   +G    G++  +++V     M  +   
Sbjct: 62  VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPF 121

Query: 120 ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +     +    +N+  +   L+T + +P E +  IL +++I A++L LR R  +K QD 
Sbjct: 122 PVDNAAAQAADTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
           S+Q      + + +V + + K I
Sbjct: 182 SQQTRVKSADRLRIVSMPTEKPI 204


>gi|304321907|ref|YP_003855550.1| NADH dehydrogenase subunit J [Parvularcula bermudensis HTCC2503]
 gi|303300809|gb|ADM10408.1| NADH dehydrogenase subunit J [Parvularcula bermudensis HTCC2503]
          Length = 200

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/200 (39%), Positives = 117/200 (58%), Gaps = 1/200 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M      F +F+   ++    V+  RNP++SV  LI AF++ AGLF+L+GAE++A + +V
Sbjct: 1   MGFADFAFSIFATAVVVWGLGVIFARNPVHSVMCLIMAFISTAGLFVLIGAEYLAFLLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDID         R    G      L  E+ V  +++    A  
Sbjct: 61  VYVGAVAVLFLFVVMMLDIDFAELRAGYARYLPFGVVVAAALVIEIGVMVTSWSGAPAAQ 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                    NN E +G VLYT+Y +  +I+G +LL++MIGAI+L  R R+ IK QD+S+Q
Sbjct: 121 APVAASDGPNNAEQLGMVLYTEYVHFFQIAGLVLLVAMIGAILLTFRQRQGIKTQDVSRQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +    ++ + +V V +GKGI
Sbjct: 181 VGRRREDGVEVVSVPTGKGI 200


>gi|307579281|gb|ADN63250.1| NADH dehydrogenase subunit J [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 229

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 116/203 (57%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FYLFS + + ++  V++VR+P+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 9   MDWVNIAFYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 68

Query: 61  VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLDID   + E   +   +G    G++  +++V     M  +   
Sbjct: 69  VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPF 128

Query: 120 ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +     +    +N+  +   L+T + +P E +  IL +++I A++L LR R  +K QD 
Sbjct: 129 PVDNAAAQAADTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 188

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
           S+Q      + + +V + + K I
Sbjct: 189 SQQTRVKSADRLRIVSMPTEKPI 211


>gi|71897863|ref|ZP_00680089.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Ann-1]
 gi|71732418|gb|EAO34472.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella
           fastidiosa Ann-1]
          Length = 221

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 115/203 (56%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FYLFS +A+ ++  V++VR+P+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVNIAFYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLDID   + E   +   +G    G++  +++V     M      
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMVTPF 120

Query: 120 ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +     +    +N+  +   L+T + +P E +  IL +++I A++L LR R  +K QD 
Sbjct: 121 PVDNAAAQAADTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + +V + + K I
Sbjct: 181 GQQTRVKSADRLRIVSMPTEKPI 203


>gi|288942125|ref|YP_003444365.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Allochromatium vinosum DSM 180]
 gi|288897497|gb|ADC63333.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Allochromatium vinosum DSM 180]
          Length = 212

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 117/196 (59%), Gaps = 3/196 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + L FY+F+ + + ++ +V+T +NP++SV  L+ AFV++A L++LL AEF+ ++ ++VYV
Sbjct: 3   EKLIFYVFALITVWAAVMVITRKNPVHSVLFLVLAFVSSAALWVLLEAEFLGIVLILVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGEL 121
           GAV+V FLF++MMLDID+        +    +  I  + A   L++         A  + 
Sbjct: 63  GAVMVLFLFVVMMLDIDLATIRAGFVQNLPLAGLIAAIMAVEILLIVGPGNFGLDAFPKP 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             L  + +N   +G +LY+ Y YP+EI+  ILLL+++ AI L LR R D K  D ++Q+ 
Sbjct: 123 EPLGAEVSNTRELGLLLYSVYIYPVEIAAVILLLAIVAAIRLTLRRRPDNKYVDPARQVR 182

Query: 182 SNPD-NSIVMVKVKSG 196
                + + +VK+ + 
Sbjct: 183 VRKGPDRVRLVKMAAE 198


>gi|121634123|ref|YP_974368.1| NADH dehydrogenase I chain J [Neisseria meningitidis FAM18]
 gi|120865829|emb|CAM09561.1| NADH dehydrogenase I chain J [Neisseria meningitidis FAM18]
          Length = 223

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR + + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMEPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|59802063|ref|YP_208775.1| hypothetical protein NGO1742 [Neisseria gonorrhoeae FA 1090]
 gi|194099638|ref|YP_002002769.1| NuoJ [Neisseria gonorrhoeae NCCP11945]
 gi|239999834|ref|ZP_04719758.1| NuoJ [Neisseria gonorrhoeae 35/02]
 gi|240017441|ref|ZP_04723981.1| NuoJ [Neisseria gonorrhoeae FA6140]
 gi|240081580|ref|ZP_04726123.1| NuoJ [Neisseria gonorrhoeae FA19]
 gi|240113862|ref|ZP_04728352.1| NuoJ [Neisseria gonorrhoeae MS11]
 gi|240118817|ref|ZP_04732879.1| NuoJ [Neisseria gonorrhoeae PID1]
 gi|240124356|ref|ZP_04737312.1| NuoJ [Neisseria gonorrhoeae PID332]
 gi|240126568|ref|ZP_04739454.1| NuoJ [Neisseria gonorrhoeae SK-92-679]
 gi|240129033|ref|ZP_04741694.1| NuoJ [Neisseria gonorrhoeae SK-93-1035]
 gi|254494617|ref|ZP_05107788.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 1291]
 gi|260439646|ref|ZP_05793462.1| NuoJ [Neisseria gonorrhoeae DGI2]
 gi|268595644|ref|ZP_06129811.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 35/02]
 gi|268597676|ref|ZP_06131843.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae FA19]
 gi|268599928|ref|ZP_06134095.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae MS11]
 gi|268604528|ref|ZP_06138695.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID1]
 gi|268682983|ref|ZP_06149845.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID332]
 gi|268685148|ref|ZP_06152010.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-92-679]
 gi|268687411|ref|ZP_06154273.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-93-1035]
 gi|291042887|ref|ZP_06568628.1| NADH-quinone oxidoreductase subunit J [Neisseria gonorrhoeae DGI2]
 gi|293398103|ref|ZP_06642308.1| NADH dehydrogenase I subunit J [Neisseria gonorrhoeae F62]
 gi|59718958|gb|AAW90363.1| putative NADH dehydrogenase I chain J [Neisseria gonorrhoeae FA
           1090]
 gi|193934928|gb|ACF30752.1| NuoJ [Neisseria gonorrhoeae NCCP11945]
 gi|226513657|gb|EEH63002.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 1291]
 gi|268549033|gb|EEZ44451.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 35/02]
 gi|268551464|gb|EEZ46483.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae FA19]
 gi|268584059|gb|EEZ48735.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae MS11]
 gi|268588659|gb|EEZ53335.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID1]
 gi|268623267|gb|EEZ55667.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID332]
 gi|268625432|gb|EEZ57832.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-92-679]
 gi|268627695|gb|EEZ60095.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-93-1035]
 gi|291013321|gb|EFE05287.1| NADH-quinone oxidoreductase subunit J [Neisseria gonorrhoeae DGI2]
 gi|291611366|gb|EFF40436.1| NADH dehydrogenase I subunit J [Neisseria gonorrhoeae F62]
 gi|317165123|gb|ADV08664.1| hypothetical protein NGTW08_1707 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 223

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSVILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|319411264|emb|CBY91671.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J;
           NDH-1, chain J) [Neisseria meningitidis WUE 2594]
          Length = 223

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY+F+ + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|240014993|ref|ZP_04721906.1| NuoJ [Neisseria gonorrhoeae DGI18]
 gi|240116593|ref|ZP_04730655.1| NuoJ [Neisseria gonorrhoeae PID18]
 gi|240122062|ref|ZP_04735024.1| NuoJ [Neisseria gonorrhoeae PID24-1]
 gi|268602262|ref|ZP_06136429.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID18]
 gi|268586393|gb|EEZ51069.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID18]
          Length = 223

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSVILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|304389076|ref|ZP_07371120.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis ATCC
           13091]
 gi|304336949|gb|EFM03139.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis ATCC
           13091]
          Length = 223

 Score =  157 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ +I L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVASIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|309379793|emb|CBX21569.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 223

 Score =  157 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|296444803|ref|ZP_06886766.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylosinus
           trichosporium OB3b]
 gi|296257751|gb|EFH04815.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylosinus
           trichosporium OB3b]
          Length = 200

 Score =  157 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 90/200 (45%), Positives = 124/200 (62%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + FFYLFS + I S+F V+  RNP++SV  LI AFVN AGLFLL GAEF+AMI +VVY
Sbjct: 1   MAAAFFYLFSAVLIASAFAVIVARNPVHSVLFLILAFVNGAGLFLLAGAEFLAMILVVVY 60

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EG 119
           VGAV V FLF++MMLD+D  E+ +   K   LG+    ++  EL + A  +    +  E 
Sbjct: 61  VGAVAVLFLFVVMMLDVDFAELRQGFSKHLPLGAGVGAVVLIELGMIAVGWQSAPSALEA 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             + +    +N   +G+VLYT+Y    + S  +LL +MIGAIVL L HR  +KRQ I++Q
Sbjct: 121 AQTPIAAGVSNTAALGQVLYTKYFVFFQASALVLLTAMIGAIVLTLHHRPGVKRQKIAEQ 180

Query: 180 LESNPDNSIVMVKVKSGKGI 199
                +N I + KV S  G+
Sbjct: 181 NARTRENVIEIKKVPSRAGV 200


>gi|254391146|ref|ZP_05006353.1| NADH dehydrogenase subunit J [Streptomyces clavuligerus ATCC 27064]
 gi|197704840|gb|EDY50652.1| NADH dehydrogenase subunit J [Streptomyces clavuligerus ATCC 27064]
          Length = 296

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 94/193 (48%), Gaps = 10/193 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A++ +   + ++  ++S   L    V  A  +L  GA F+ ++ +VV
Sbjct: 8   TGEAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVVQIVV 67

Query: 62  YVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +     + E  K + +L +         L+    N  +    G
Sbjct: 68  YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVLLVAGLGNASLNEFNG 127

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R         +Q
Sbjct: 128 LGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERT--------EQ 179

Query: 180 LESNPDNSIVMVK 192
             +  + +   V+
Sbjct: 180 ARTQREQAEERVR 192


>gi|328775205|gb|AEB39998.1| NADH dehydrogenase subunit 6 [Funaria hygrometrica]
          Length = 201

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 11/198 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F +FS +A++SS +V+  +NP++SV   I  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFSVFSSIALVSSVMVIRAKNPVHSVLFFILVFFNTSGLLVLLGLDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-----------NFMV 114
           + V FLF++MML+I I        R       IG++    I                   
Sbjct: 62  IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGVIFLLEIFFIVDNDYIPILPTKLSTT 121

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +      +  +    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +K Q
Sbjct: 122 YLTYTVYAEKIQSWTNLETLGNLLYTTYFVLFLVSSLILLVAMIGAIVLTMHKTTQVKGQ 181

Query: 175 DISKQLESNPDNSIVMVK 192
           D+ +Q   +  N+I  ++
Sbjct: 182 DVFRQNAIDFKNTIKKIR 199


>gi|254674113|emb|CBA09897.1| NADH-ubiquinone oxidoreductase, chain J [Neisseria meningitidis
           alpha275]
 gi|308388471|gb|ADO30791.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha710]
 gi|325137078|gb|EGC59674.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           M0579]
 gi|325202920|gb|ADY98374.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           M01-240149]
 gi|325207281|gb|ADZ02733.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 223

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVYRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|164422216|gb|ABY55189.1| NADH dehydrogenase subunit 6 [Bambusa oldhamii]
          Length = 205

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI+ VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM +I I        R    S  IG I   E+     N  +       +  
Sbjct: 61  IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNALDSRRTI 194


>gi|294814403|ref|ZP_06773046.1| NADH-quinone oxidoreductase subunit J [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442793|ref|ZP_08217527.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327002|gb|EFG08645.1| NADH-quinone oxidoreductase subunit J [Streptomyces clavuligerus
           ATCC 27064]
          Length = 305

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 96/196 (48%), Gaps = 3/196 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A++ +   + ++  ++S   L    V  A  +L  GA F+ ++ +VV
Sbjct: 17  TGEAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVVQIVV 76

Query: 62  YVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +     + E  K + +L +         L+    N  +    G
Sbjct: 77  YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVLLVAGLGNASLNEFNG 136

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    +Q
Sbjct: 137 LGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERTEQARTQ-REQ 195

Query: 180 LESNPDNSIVMVKVKS 195
            E      + +  + +
Sbjct: 196 AEERVRAGVQLPPLPA 211


>gi|237748882|ref|ZP_04579362.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229380244|gb|EEO30335.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 211

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 114/196 (58%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY+F  + ++++  V+T R+P+++V  L+ +F   A +++LL AEF+A+I L+
Sbjct: 4   MQLTNVLFYVFGAIMVLAALRVITSRHPVHAVLYLVLSFFTGAAIWILLKAEFLALILLL 63

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MM+D+D+   +   ++  + +  +G+     +        +  +  
Sbjct: 64  VYVGAVMVLFLFVVMMMDLDLTELKRAARKNMISATIVGVAIVLEMSAVLFRGFWMIDSH 123

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           + +   K      IGK L+T Y + +EI+  ILL+++I A+ L  R R D K    +K +
Sbjct: 124 VPKSASKIGLTAEIGKALFTDYLFNVEIAAIILLVALIAAVTLTFRKRTDAKYTSANKAI 183

Query: 181 ESNPDNSIVMVKVKSG 196
               ++ I +V++K+ 
Sbjct: 184 HVRAEDRIRIVEMKAE 199


>gi|161870813|ref|YP_001599986.1| NADH dehydrogenase I chain J [Neisseria meningitidis 053442]
 gi|161596366|gb|ABX74026.1| NADH dehydrogenase I chain J [Neisseria meningitidis 053442]
          Length = 223

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSTILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTNLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|325130979|gb|EGC53706.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           OX99.30304]
 gi|325205337|gb|ADZ00790.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis
           M04-240196]
          Length = 223

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A L++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ +I L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVASIALVHRKTTNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|217979058|ref|YP_002363205.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocella
           silvestris BL2]
 gi|217504434|gb|ACK51843.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocella
           silvestris BL2]
          Length = 201

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 90/200 (45%), Positives = 125/200 (62%), Gaps = 3/200 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +LFFYLFS + I S+F V+T RNP++SV  LI AF NAAGLFLLLGAEF+AM+ +VVY
Sbjct: 2   IAALFFYLFSAVLIASAFAVITSRNPVHSVLFLILAFFNAAGLFLLLGAEFLAMLLVVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAEG 119
           VGAV V FLF++MMLD+D  E  +   +   +G     I+  EL++    + V   S   
Sbjct: 62  VGAVAVLFLFVVMMLDVDFAEFKQGFMRYLPVGGAIGAIVLLELVLVVGGWRVDAASLAN 121

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             S      +N   +G+VLYTQYA     +G +LL +MIGAI+L L H+  IKRQDI+ Q
Sbjct: 122 VASPAPPAMSNTLALGRVLYTQYACLFIAAGMVLLTAMIGAIILTLHHKVGIKRQDIAAQ 181

Query: 180 LESNPDNSIVMVKVKSGKGI 199
               P +++ + K    +G+
Sbjct: 182 NARTPKDAVELRKKSFRQGV 201


>gi|63025105|ref|YP_232799.1| NADH dehydrogenase subunit 6 [Geodia neptuni]
 gi|37961467|gb|AAP59164.1| NADH dehydrogenase subunit 6 [Geodia neptuni]
          Length = 185

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/177 (37%), Positives = 102/177 (57%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+   IIS  +V++  NP++SV  L+ AF+ A+ LF+LL  EF+A+I L+VYVGA+
Sbjct: 4   LFYLFALSIIISGVMVISALNPVHSVLWLVVAFIGASALFILLEVEFLALILLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IMML++       R      G     +  +E+++  +      +    +    
Sbjct: 64  AILFLFVIMMLNLTGLEGTDRSNYLPAGFIIGIVFLSEVLILQTRISTVESYRNSNWNFM 123

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           + +N+E +G+VLYT Y Y   ++  ILL+++IGAIVL    R  IKRQDI  Q    
Sbjct: 124 EASNIEVLGRVLYTNYCYLFILASLILLVALIGAIVLTHDTRVKIKRQDIFIQTSRQ 180


>gi|83592899|ref|YP_426651.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575813|gb|ABC22364.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodospirillum rubrum ATCC 11170]
          Length = 205

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 131/204 (64%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++Q+L FY+ + + + S+F+VV  RNP++SV  LI  FVN+AGLFLL+GAEFVAM+ +V
Sbjct: 1   MIIQALIFYMLAAIMVASAFMVVISRNPVHSVLWLILTFVNSAGLFLLMGAEFVAMVVVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLDI+ + + E       LG+    +L AE+ V A  + +     
Sbjct: 61  VYVGAVAVLFLFVVMMLDINYLRLREGFLSYMPLGAAMGVVLLAEIAVLAGGWAMAPDAM 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            L R+         N + IG+VLYT Y Y  + +G +LL++MIG+I+L  R    +KRQ+
Sbjct: 121 GLRRVPMVDPAALTNTQAIGQVLYTDYIYLFQAAGLVLLVAMIGSIMLTHRANPLVKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           ++ Q+    + ++ + KV +G+GI
Sbjct: 181 VADQIARRKERTLKLNKVPTGRGI 204


>gi|253807608|gb|ACT36186.1| NADH dehydrogenase subunit 6 [Helicosporidium sp. ex Simulium
           jonesi]
          Length = 207

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 18/206 (8%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FY+F+   ++S   V+  RNP+YSV  LI  F NA+GL +LLG +F AMI LVVYVG
Sbjct: 2   DLLFYIFASSLLLSGVFVIQSRNPVYSVLFLILGFFNASGLLVLLGLDFFAMIFLVVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG----- 119
           A+ V FLF++MML+I +E    +K R       +G L    ++  +N  + S        
Sbjct: 62  AIAVLFLFVVMMLNIKVEEFHEKKLRYLPVGGILGFLFLFEVLILTNHDIISLVPYELNT 121

Query: 120 -------------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                        + S      N +  +G ++YT Y Y   ++  ILL++MIGAIVL ++
Sbjct: 122 SYLKDLFNQTNFIDWSSHYSTSNTIHALGNIIYTYYFYFFLMASLILLVAMIGAIVLTMQ 181

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVK 192
               +K+Q +  Q   +   +I  + 
Sbjct: 182 KNLQVKKQQVYLQNTRDFTKTIRKIN 207


>gi|262186704|ref|YP_003275963.1| NADH dehydrogenase subunit 6 [Pleurozia purpurea]
 gi|237780701|gb|ACR19347.1| NADH dehydrogenase subunit 6 [Pleurozia purpurea]
          Length = 199

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 11/198 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+F  +A++S  +V+  +NP++SV  LI  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFYVFVVLALVSGAMVIRAKNPVHSVLFLISVFRNTSGLLVLLGPDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-----------NFMV 114
           + V F F++MML   IE       R       IG++    I               +   
Sbjct: 62  IAVSFSFVVMMLHTRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILSTKSGAT 121

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           +      +  +    N E +G +LYT Y +   +S  I L+++IGAIVL +     +KRQ
Sbjct: 122 YLTYTVYAEKIHSWTNSETLGNLLYTTYFFLFLVSSLISLVALIGAIVLTMHKTTRVKRQ 181

Query: 175 DISKQLESNPDNSIVMVK 192
           D+  Q   +  N+I  V+
Sbjct: 182 DVFIQNAIDFRNTIRKVR 199


>gi|144900795|emb|CAM77659.1| NADH-quinone oxidoreductase chain 10 [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 203

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 120/202 (59%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +L FY+F+ +A+ S  +V++ RNP++SV  LI  F NAAGLFLLLGAEF+AM+ +VVY
Sbjct: 2   IAALIFYMFAGLAVASGVMVISARNPVHSVLFLILCFFNAAGLFLLLGAEFLAMVLVVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE---- 118
           VGAV V FLF++MMLDI+         +       IG++    +        F+ +    
Sbjct: 62  VGAVAVMFLFVVMMLDINFLRLREGVAQYLPTGAVIGLVLLVELAVMFGGWAFAPDVEAL 121

Query: 119 -GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
                  V +  N E +G+++YT+Y Y  + SG +LL++M+GAI+L  R R  +++Q I 
Sbjct: 122 LAAPIPAVSEMTNTEALGRLIYTKYVYLFQASGVVLLVAMVGAILLTHRSRTGVRKQKIY 181

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+     NS+ + KV +G GI
Sbjct: 182 DQVGRTAANSVEIRKVSTGGGI 203


>gi|217331580|gb|ACK38306.1| NADH dehydrogenase subunit 6 [Isoetes engelmannii]
 gi|314908352|gb|ADT62123.1| NADH dehydrogenase subunit 6 [Isoetes engelmannii]
          Length = 208

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 104/180 (57%), Gaps = 10/180 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F +FS +A++S  +V+  +NP++SV  LI  F + +GL L LG +F +MI LVVYVGA
Sbjct: 2   ILFSVFSSIALVSGVMVMRAKNPVHSVLFLILVFCHTSGLLLWLGLDFFSMILLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MML+I I E+ E   +   +G     IL  E+ +   N  +      ++ L
Sbjct: 62  IAVLFLFVVMMLNIKIAEIHEDVLRYLPVGGIIGFILGWEMFLIVDNDYIPILSTNMNTL 121

Query: 125 --------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQD 175
                   +    N+E IG +LYT Y     +S  ILL++MIGAIV+ + HR   +KRQ+
Sbjct: 122 SYTVCAGKIQSWTNLETIGNLLYTIYLVWFLVSSLILLVAMIGAIVITMEHRTTRVKRQN 181


>gi|319638826|ref|ZP_07993584.1| NADH dehydrogenase subunit I J [Neisseria mucosa C102]
 gi|317399730|gb|EFV80393.1| NADH dehydrogenase subunit I J [Neisseria mucosa C102]
          Length = 223

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +  +   VT +NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G L A  ++          +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEAMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    NN+ ++G  +YT Y  P E++  +LLL M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTFNPKRMDPAD 180

Query: 179 QLESNPDN-SIVMVKVKSGK 197
           Q++   D   + +VK+++ K
Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200


>gi|284794666|ref|YP_003412024.1| NADH dehydrogenase subunit 6 [Lubomirskia baicalensis]
 gi|284098135|gb|ADB78066.1| NADH dehydrogenase subunit 6 [Lubomirskia baicalensis]
          Length = 195

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 11/188 (5%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+   IIS  +V++  NP++SV  LI AF +A+ LF+LL  EF+A+I L+VYVGA+
Sbjct: 4   LFYLFTLGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-----------FMVF 115
            + FLF+IMML++                F IG++    I                    
Sbjct: 64  AILFLFVIMMLNLTDLEGGGDMSNYLPAGFIIGVVFLFEIAHVMGGRMVSWPHGGISGTL 123

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           S++     ++    NVE +G+VLYT Y Y   I+ FILL++MIGAIVL    + +IKRQD
Sbjct: 124 SSDIAQPAILLGNPNVEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHDSKTEIKRQD 183

Query: 176 ISKQLESN 183
           I  Q    
Sbjct: 184 IFIQTSRQ 191


>gi|163855996|ref|YP_001630294.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella petrii DSM
           12804]
 gi|163259724|emb|CAP42025.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella petrii]
          Length = 215

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/198 (36%), Positives = 119/198 (60%), Gaps = 7/198 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +I++F V+T R+P+ +V  LI AF NAA L++LLGAEF+A++ ++
Sbjct: 1   MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSA 117
           VYVGAV+V FLF++MMLDI I+      + G      +G+L   ++V   +F++   +  
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRIDT----LRHGLKTYLPLGLLIGAVLVVEMSFVLGATWYG 116

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            G  + +    NN   +G+V+YTQY Y +E+   +LL+ MI AI L LR RRD K  D S
Sbjct: 117 AGPQASMAADYNNTRALGEVMYTQYVYAVEVGAALLLVGMIAAIALTLRRRRDAKYNDPS 176

Query: 178 KQLESNPDNSIVMVKVKS 195
             +     +   +V + +
Sbjct: 177 AAVRVRAKDRFRLVSMPA 194


>gi|194366595|ref|YP_002029205.1| NADH dehydrogenase subunit J [Stenotrophomonas maltophilia R551-3]
 gi|194349399|gb|ACF52522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Stenotrophomonas maltophilia R551-3]
          Length = 218

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ F++F+  A +S+  V++VRNP+++V  L+  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVNIAFWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFS 116
           VYVGAV+V FLF++MMLDID         R       + +        LI      +   
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDPTKLREGWVRYLPVGLIVAVAMLVQMLILIGVKGRAVTPF 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                + L    +NV  + + L+T+Y  P E +  IL ++++ A++L LR R  +K Q+ 
Sbjct: 121 PADNAAALAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNP 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q     D  + MVK+ +   +
Sbjct: 181 GEQTMVKADQRLRMVKMGAEAPV 203


>gi|164420802|ref|YP_001648470.1| NADH dehydrogenase subunit 6 [Ephydatia muelleri]
 gi|158938918|gb|ABW83846.1| NADH dehydrogenase subunit 6 [Ephydatia muelleri]
          Length = 196

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 101/189 (53%), Gaps = 12/189 (6%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+   IIS  +V++  NP++SV  LI AF +A+ LF+LL  EF+A+I L+VYVGA+
Sbjct: 4   LFYLFTLGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-------- 118
            + FLF+IMML++                F IG++    I       + S          
Sbjct: 64  AILFLFVIMMLNLTDLEGGGDMSNYLPAGFIIGVVFLFEIAHVMGGRMVSWPHGGISGTL 123

Query: 119 ----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                    ++    NVE +G+VLYT Y Y   I+ FILL++MIGAIVL    + +IKRQ
Sbjct: 124 SSDIAAQPAILLGNPNVEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHDSKTEIKRQ 183

Query: 175 DISKQLESN 183
           DI  Q    
Sbjct: 184 DIFIQTSRQ 192


>gi|164421001|ref|YP_001648496.1| NADH dehydrogenase subunit 6 [Topsentia ophiraphidites]
 gi|158938931|gb|ABW83858.1| NADH dehydrogenase subunit 6 [Topsentia ophiraphidites]
          Length = 188

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 5/182 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+F  IIS  +V++  NP++SV  LI AF +AA LF+LL  +F+A+I L+VYVGA+
Sbjct: 4   LFYLFAFNVIISGIMVISALNPVHSVLWLIVAFTSAAALFILLEVDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGEL 121
            + FLF+IMML++                F IG++    ++      A+  + +      
Sbjct: 64  AILFLFVIMMLNLTDLGGGGDMSNYLPAGFIIGVVFLFEVLIFQSRMATFNLSYINYPHN 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
              + K  N+E +G+VLYT Y Y   ++ FILL++MIGAIVL    R +IKRQDI  Q  
Sbjct: 124 WDFIEKAPNIEVLGRVLYTNYYYLFIMASFILLVAMIGAIVLTHSTREEIKRQDIFIQTS 183

Query: 182 SN 183
             
Sbjct: 184 RQ 185


>gi|89280733|ref|YP_514639.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group]
 gi|289065047|ref|YP_003433858.1| NADH dehydrogenase subunit 6 [Oryza rufipogon]
 gi|74100100|gb|AAZ99264.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group]
 gi|74100155|gb|AAZ99318.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|74100209|gb|AAZ99371.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|285026129|dbj|BAI67962.1| NADH dehydrogenase subunit 6 [Oryza rufipogon]
 gi|285026159|dbj|BAI67991.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group]
          Length = 205

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + AGL +LLG +F AMI+ VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTAGLLILLGLDFSAMISPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM +I I        R    S  IG++   E+     N  +       +  
Sbjct: 61  IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     ++RQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVQRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNALDSRRTI 194


>gi|62161302|ref|YP_214868.1| NADH dehydrogenase subunit 6 [Axinella corrugata]
 gi|55275033|gb|AAV49311.1| NADH dehydrogenase subunit 6 [Axinella corrugata]
          Length = 183

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/177 (40%), Positives = 101/177 (57%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF    I+S  +V++  NP++SV  LI AF +A  LF+LL  EF+A++ L+VYVGA+
Sbjct: 4   LFYLFXLSVILSGIMVISAFNPVHSVLWLIVAFTSATALFILLEVEFIALMFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IMML++                F IG++        S+F   S+      L+ 
Sbjct: 64  AILFLFVIMMLNLTDXEGGEDMSNYLPAGFIIGVVFLINCRMVSHFGQQSSYYISWDLIE 123

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           K  N+E +G+VLYT Y Y   I+ FILL++MIG IVL    R +IKRQ+I  Q    
Sbjct: 124 KAPNIEVLGRVLYTNYYYLFIIASFILLVAMIGVIVLTHDTRSEIKRQNIFLQTSRQ 180


>gi|317097065|ref|YP_004123207.1| NADH dehydrogenase subunit 6 [Oscarella viridis]
 gi|308912700|gb|ADO51460.1| NADH dehydrogenase subunit 6 [Oscarella viridis]
          Length = 197

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 111/191 (58%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY+F+   IIS  +V++  NPI+SVF LI  F+ A+ LF+LLG +F+A+I L+VYVGA+
Sbjct: 4   LFYIFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-------- 117
            + FLF+IMML++ D+E          +GS    +L  E+++       +S         
Sbjct: 64  AILFLFVIMMLNLTDLEGGGDMSNYIPIGSVIGVLLLFEVLIMGREATAYSYRDIDHECL 123

Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  + S  + K +N+E +G++LYT Y Y   I+ FILL++MIGAIVL      ++K
Sbjct: 124 RGGVDAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGTELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q   +
Sbjct: 184 RQDLFTQTSRS 194


>gi|307328630|ref|ZP_07607803.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           violaceusniger Tu 4113]
 gi|306885742|gb|EFN16755.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           violaceusniger Tu 4113]
          Length = 303

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 91/198 (45%), Gaps = 2/198 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             ++L F++   +A+I +   + +   ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 14  TGEALQFWVLGTVAVIGALCTILMHKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVV 73

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L   +++CA            
Sbjct: 74  YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGILLCAGLGNASLTTWNG 133

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                 G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    ++  
Sbjct: 134 LGQANAGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RARTQREQA 191

Query: 182 SNPDNSIVMVKVKSGKGI 199
                +   V      G+
Sbjct: 192 EARVRTGRNVPPLPAPGV 209


>gi|22550345|ref|NP_689370.1| NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum]
 gi|22417011|gb|AAM96610.1|AF494279_15 NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum]
          Length = 195

 Score =  154 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 6/194 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F LFS +A++S+ +V++ +NP++S+  LI  F NA+ L +LLG +F AMI LVVYVG
Sbjct: 2   TILFCLFSSIALVSAGMVISAKNPVHSILFLILVFCNASALLVLLGLDFFAMIFLVVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA------SNFMVFSAE 118
           A+ V FLF++MML+I+I        R       I ++    +         S  +   A 
Sbjct: 62  AIAVLFLFVVMMLNINIAEIHENVVRYLPIGGIIALIFLLEMFLVVEGLPTSTIIQAPAY 121

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
              +  +    N+E +G +LYT Y     I   ILL++MIGAIVL +     +KRQD+  
Sbjct: 122 TIFAEKIESLTNLEALGNLLYTTYFLLFLICSLILLIAMIGAIVLTMHKTTKVKRQDVFL 181

Query: 179 QLESNPDNSIVMVK 192
           Q   +   +I  ++
Sbjct: 182 QNSVDFSTTIRKIR 195


>gi|188991038|ref|YP_001903048.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732798|emb|CAP50992.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas
           campestris pv. campestris]
          Length = 219

 Score =  154 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 108/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVTIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFS 116
           VYVGAV+V FLF++MMLDID         +       + +        LI          
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPVGVIVAVAMLAQMVTLIGVKGRLATPF 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 121 PVDNAAAQAADTSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKMQNA 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
           S+Q      + + MVK+   K +
Sbjct: 181 SEQSRVRSTDRLRMVKMAVEKPV 203


>gi|188580276|ref|YP_001923721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium populi BJ001]
 gi|179343774|gb|ACB79186.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium populi BJ001]
          Length = 206

 Score =  154 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 87/204 (42%), Positives = 125/204 (61%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   + FFYLF+ +A+ S F+V+  RNP+ SV  LI AFVNAAGLF+++GAEF+AMI +V
Sbjct: 1   MTAAAAFFYLFASLAVASGFMVIAARNPVTSVLFLILAFVNAAGLFVMMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D     +  ++   +G     I   EL++    + +     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAALRQGFQRYLPIGGLIGAIFLIELLLVVGTWTIDPGLV 120

Query: 120 EL----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +     +       N E +G+VLYT Y Y  +I+G ILL++MIGAIVL LR R  +KRQ+
Sbjct: 121 QAPLGRAAHGETATNTEALGRVLYTDYVYAFQIAGLILLVAMIGAIVLTLRERTGVKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           IS Q       ++  +KV S +G+
Sbjct: 181 ISVQNARTQTMAVDTIKVPSRQGV 204


>gi|163868364|ref|YP_001609573.1| NADH dehydrogenase subunit J [Bartonella tribocorum CIP 105476]
 gi|161018020|emb|CAK01578.1| NADH dehydrogenase I chain J [Bartonella tribocorum CIP 105476]
          Length = 206

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 82/191 (42%), Positives = 124/191 (64%), Gaps = 5/191 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + + S+ +V+T RNP++SV  LI AF NAA LFLL GAEF+  I LVVYVGAV V FLF+
Sbjct: 16  IMLTSAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGFILLVVYVGAVAVLFLFV 75

Query: 74  IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRLVFKG 128
           +MMLD+D  E+     +   +G+    I+A ELI+   +     ++ +   +    + + 
Sbjct: 76  VMMLDVDFAELKSGTLRYAPIGALIGVIIAIELIIVFVSSHFSPVLRTHVTQPMPDLGQR 135

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188
            N + +G +LYT Y +  +I+G ILL++MIGAIVL LRH+  +KRQ I+KQ+    +++I
Sbjct: 136 TNTQALGDILYTDYVFYFQIAGIILLVAMIGAIVLTLRHKSGVKRQSIAKQVSRTVESAI 195

Query: 189 VMVKVKSGKGI 199
            + +V+SGKGI
Sbjct: 196 EIKQVESGKGI 206


>gi|170676855|ref|YP_001742098.1| NADH dehydrogenase subunit 6 [Suberites domuncula]
 gi|170649721|emb|CAM84213.1| NADH dehydrogenase subunit 6 [Suberites domuncula]
          Length = 189

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/180 (40%), Positives = 105/180 (58%), Gaps = 3/180 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+F  I+S  +V++  NP++SVF LI AF +AA LF+LL  EF+A I L+VYVGA+
Sbjct: 4   LFYLFAFGVILSGIMVISALNPVHSVFWLIVAFTSAALLFILLEVEFIAFIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFS--AEGELSR 123
            + FLF+IMML++      P+           IG++    ++  S++   S  +      
Sbjct: 64  AILFLFVIMMLNLTDLGNNPQDMSNYMPTGLIIGVVVILEVLIFSSWKSNSEGSPYLRWD 123

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
            + K +N+E +G+VLYT Y Y   ++ FILL +MIGAIVL       IKRQD   Q+   
Sbjct: 124 YIEKTSNIEVLGRVLYTDYYYLFILASFILLSAMIGAIVLTQTKSVGIKRQDSFTQVSRQ 183


>gi|114330934|ref|YP_747156.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosomonas
           eutropha C91]
 gi|114307948|gb|ABI59191.1| NADH dehydrogenase subunit J [Nitrosomonas eutropha C91]
          Length = 201

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 124/203 (61%), Gaps = 10/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ Q   FY  + + II +  V+T+RNP+YSV  L+ AFV ++GL++LL AEF+A+  +V
Sbjct: 1   MIFQDFVFYSLASVVIICALGVITLRNPVYSVLLLVLAFVTSSGLWILLEAEFLAIALVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++    + + GF   F  G + A ++    + ++ S +  
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLD----QMREGFWKWFPFGAILAFIMTVEMSMVLMSKQFS 116

Query: 121 LSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
              +          +N + +G+++YT+Y Y  E++  ILL++M+ AI + LRHR D K  
Sbjct: 117 SEIIQTPEYKSVDYSNTKELGRLIYTEYVYVFELAAVILLVAMVAAIAITLRHRTDKKSS 176

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
           + S+Q+  + +  + ++ + + K
Sbjct: 177 NASRQIAVSRNERLKVISMPAEK 199


>gi|187923349|ref|YP_001894991.1| NADH dehydrogenase subunit J [Burkholderia phytofirmans PsJN]
 gi|187714543|gb|ACD15767.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia
           phytofirmans PsJN]
          Length = 230

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 126/207 (60%), Gaps = 14/207 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+F+ + ++S   V+T RNP+ S   L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+I+V     KR    +  +G     +IV  +  +++   G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINIDVLRKDFKRFVPMATLVG----AIIVIETALILWHGYGA 116

Query: 121 LSRL----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +            +   +N   IGKV+YT Y +  E++G +LL+++I AI L   H++D
Sbjct: 117 TATALRDTTAAANGMGDWSNTRLIGKVIYTDYIFAFEVAGLVLLVAIIAAIALTASHKKD 176

Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197
            KRQ++S+Q++    + + +VK+KS K
Sbjct: 177 SKRQNVSEQVKVRAQDRVRVVKMKSEK 203


>gi|317134283|ref|YP_004123166.1| NADH dehydrogenase subunit 6 [Pseudocorticium jarrei]
 gi|308912684|gb|ADO51445.1| NADH dehydrogenase subunit 6 [Pseudocorticium jarrei]
          Length = 197

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 109/191 (57%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY+ +   IIS  +V++  NPI+SVF LI  F  A+ LF+LLG +F+A+I L+VYVGA+
Sbjct: 4   LFYILALGVIISGIMVISALNPIHSVFWLIVVFSGASALFILLGIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-------- 117
            + FLF+IMML++ D+E          +GS    +L  E+++       +S         
Sbjct: 64  AILFLFVIMMLNLTDLEGDGDMSNYIPIGSIIGVLLLFEVLIMGREATAYSYRDIDHECL 123

Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  + S  + K +N+E +G++LYT Y Y   I+ FILL++MIGAIVL      ++K
Sbjct: 124 KRGGDAWDASIEIIKTSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q   +
Sbjct: 184 RQDLFTQTSRS 194


>gi|21231951|ref|NP_637868.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767922|ref|YP_242684.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113681|gb|AAM41792.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66573254|gb|AAY48664.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 219

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVTIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFS 116
           VYVGAV+V FLF++MMLDID         +       + +        LI   +      
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPVGVIVAVAMLAQMVTLIGVKARLATPF 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 121 PVDNAAAQATDTSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKMQNA 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
           S+Q      + + MVK+   K +
Sbjct: 181 SEQSRVRSTDRLRMVKMAVEKPV 203


>gi|190575269|ref|YP_001973114.1| NADH dehydrogenase subunit J [Stenotrophomonas maltophilia K279a]
 gi|190013191|emb|CAQ46824.1| putative NADH-ubiquinone oxidoreductase, chain J [Stenotrophomonas
           maltophilia K279a]
          Length = 218

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 107/203 (52%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ F++F+  A +S+  V++VRNP+++V  L+  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVNIAFWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFS 116
           VYVGAV+V FLF++MMLDID         R       + +        LI      +   
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDPTKMREGWVRYLPVGLIVAVAMLVQMLILIGVKGRAVTPF 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                + +    +NV  + + L+T+Y  P E +  IL ++++ A++L LR R  +K Q+ 
Sbjct: 121 PADNAAAVAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNP 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q        + MVK+ +   +
Sbjct: 181 GEQTMVKAGQRLRMVKMGAEAPV 203


>gi|317097445|ref|YP_004123644.1| NADH dehydrogenase subunit 6 [Oscarella tuberculata]
 gi|317134139|ref|YP_004123302.1| NADH dehydrogenase subunit 6 [Oscarella lobularis]
 gi|308912624|gb|ADO51389.1| NADH dehydrogenase subunit 6 [Oscarella tuberculata]
 gi|308912746|gb|ADO51503.1| NADH dehydrogenase subunit 6 [Oscarella lobularis]
          Length = 197

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 111/191 (58%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY+F+   IIS  +V++  NPI+SVF LI  F+ A+ LF+LLG +F+A+I L+VYVGA+
Sbjct: 4   LFYIFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-------- 117
            + FLF+IMML++ D+E          +GS    +L  E+++       ++         
Sbjct: 64  AILFLFVIMMLNLTDLEGGGDMSNYIPIGSGIGVLLLFEVLIMGREATAYNYRDIDHECL 123

Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  + S  + K +N+E +G++LYT Y Y   I+ FILL++MIGAIVL      ++K
Sbjct: 124 KGGVDAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q   +
Sbjct: 184 RQDLFTQTSRS 194


>gi|126695328|ref|YP_001090215.1| NADH dehydrogenase subunit 6 [Oscarella carmela]
 gi|317097411|ref|YP_004123616.1| NADH dehydrogenase subunit 6 [Oscarella malakhovi]
 gi|116876184|gb|ABK30948.1| NADH dehydrogenase subunit 6 [Oscarella carmela]
 gi|312162788|gb|ADO51545.1| NADH dehydrogenase subunit 6 [Oscarella malakhovi]
          Length = 197

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 111/191 (58%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY+F+   IIS  +V++  NPI+SVF LI  F+ A+ LF+LLG +F+A+I L+VYVGA+
Sbjct: 4   LFYIFALGIIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--------- 116
            + FLF+IMML++ D+E          +GS    +L  E+++       ++         
Sbjct: 64  AILFLFVIMMLNLTDLEGGGDMSNYIPIGSIIGVLLLFEVLIMGREATGYNYRDIDHECL 123

Query: 117 ----AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  + S  + K +N+E +G++LYT Y Y   I+ FILL++MIGAIVL      ++K
Sbjct: 124 RGGVNAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q   +
Sbjct: 184 RQDLFTQTSRS 194


>gi|254491551|ref|ZP_05104730.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Methylophaga thiooxidans DMS010]
 gi|224463029|gb|EEF79299.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Methylophaga thiooxydans DMS010]
          Length = 199

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 118/196 (60%), Gaps = 6/196 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY F+ + + ++ +V+TVRNP+ +   L+ AF  +A ++L+L AEF+A+  ++VY
Sbjct: 1   MEKIIFYAFAAILLFAATMVITVRNPVRAALFLVLAFFTSAAIWLMLQAEFLAISLVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV+V FLF++MMLDID+   +     GF     +GI+ A LIV     ++ + + +++
Sbjct: 61  VGAVLVLFLFVVMMLDIDLAPLQE----GFTKYLPLGIIVAALIVAEMITVLNAPQFDIA 116

Query: 123 RLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                G +N   +G++LYT Y YP EI+  IL ++++ AI L LR     K QD  KQ+ 
Sbjct: 117 ATAVAGESNTRMLGRLLYTVYVYPFEIASVILTVAIVAAITLTLREHSR-KLQDPGKQVA 175

Query: 182 SNPDNSIVMVKVKSGK 197
                 + +V ++S K
Sbjct: 176 VRKQERVRLVDLRSAK 191


>gi|154248543|ref|YP_001419501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xanthobacter
           autotrophicus Py2]
 gi|154162628|gb|ABS69844.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xanthobacter
           autotrophicus Py2]
          Length = 204

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 90/204 (44%), Positives = 131/204 (64%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + + FFYLF+F+ + S+F+V++ RNP+ SV  LI AFVNAAGLF+L+GAEF+A+I +V
Sbjct: 1   MNVAAAFFYLFAFVLVASAFMVISSRNPVQSVLFLILAFVNAAGLFILIGAEFLALILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115
           VYVGAV V FLF++MMLD+D         +       IG++    +V  +   V      
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGLVIGLIFLAELVLVAGAWVMGPGVA 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           SA            NV+ IG+VLYT Y Y  + +GF+LL++MIGAIVL LRH+ ++KRQ+
Sbjct: 121 SAVKSAPPSAGDVGNVQAIGQVLYTDYIYFFQAAGFVLLVAMIGAIVLTLRHKVNVKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           IS Q+      ++ +VKV+ G+G+
Sbjct: 181 ISAQVARTAKTAMDVVKVRPGQGL 204


>gi|160872240|ref|ZP_02062372.1| NADH-quinone oxidoreductase, j subunit [Rickettsiella grylli]
 gi|159121039|gb|EDP46377.1| NADH-quinone oxidoreductase, j subunit [Rickettsiella grylli]
          Length = 198

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/199 (34%), Positives = 113/199 (56%), Gaps = 6/199 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +QS  F++F+ + I S+ + +  RN + S   L+  F +AA L++LL AEF+ +I ++
Sbjct: 2   ISIQSCVFFIFAGVLITSALMTIISRNSVRSALFLVLTFFSAAALWILLEAEFLGLILIL 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+  FLF+IM L++D    +  K+ GF+      +L   +++      VF   G 
Sbjct: 62  VYVGAVMTLFLFVIMTLNLD----KTEKQYGFVPYLVWAVLGVLILLALLIDAVFPLTGN 117

Query: 121 --LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             L  L    +N + +G VLYTQYAYP EI+G +LL+ +I  I L  R +R  K      
Sbjct: 118 KILIPLAANESNTQALGNVLYTQYAYPFEITGVLLLVGIIATIALSFREKRLNKAISPEL 177

Query: 179 QLESNPDNSIVMVKVKSGK 197
           QL+  P + + ++K+ + K
Sbjct: 178 QLKIKPSDRLRIIKMPTEK 196


>gi|326403105|ref|YP_004283186.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum
           AIU301]
 gi|325049966|dbj|BAJ80304.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum
           AIU301]
          Length = 216

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY+F+ + ++S+ +V+T RNP++SV  LI AF+NA  LF+L GAEF+AM+ ++VYVG
Sbjct: 4   TLAFYVFAAILLLSACMVITARNPVHSVLFLILAFINAGALFVLAGAEFLAMVLVIVYVG 63

Query: 65  AVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           AV V FLF++MMLD+D     E  ++   LG     IL  E+   A  + +  A    S+
Sbjct: 64  AVAVLFLFVVMMLDVDFAALREGFQRYAPLGLLIGFILMVEIGAVAIGWTITPAAHLASQ 123

Query: 124 LVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +      +N   +G ++YT+Y +  E+   +LL++MIGAIVL     R  +RQDIS Q +
Sbjct: 124 VPMPAHLSNTAALGDLIYTRYMFAFELVALLLLVAMIGAIVLTHSGERRSRRQDISTQHQ 183

Query: 182 SNPDNSIVMVKVKSGKG 198
              D ++ MVK+  GKG
Sbjct: 184 RPIDETLTMVKLGIGKG 200


>gi|329118914|ref|ZP_08247609.1| NADH-quinone oxidoreductase subunit J [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464942|gb|EGF11232.1| NADH-quinone oxidoreductase subunit J [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 218

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 113/198 (57%), Gaps = 3/198 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY  + + +  +   VTV+NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MSFQLIMFYTLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MML+ID+E       R    +  +G+L   A +++  S     +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDVEEMRKGFWRNAPVAATVGVLMAVALILILVSPKTNLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    +NV  +G+ +YT Y  P E++  +LLL M+ AI L+ R   + KR D ++
Sbjct: 121 GAMVDVPADHSNVRELGRQIYTTYMLPFELAAVLLLLGMVAAIALVHRKSNNPKRMDPAE 180

Query: 179 QLESNPDN-SIVMVKVKS 195
           Q++ +     + +VK++ 
Sbjct: 181 QVKVDASKGRMKLVKMQP 198


>gi|297159517|gb|ADI09229.1| NADH dehydrogenase subunit J [Streptomyces bingchenggensis BCW-1]
          Length = 312

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 93/184 (50%), Gaps = 3/184 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++ + +A+I +   + +R  ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 11  TGEAVQFWILATVAVIGALGTILMRKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVV 70

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L   +++CA            
Sbjct: 71  YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGILLCAGIGNASLKSFNG 130

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISK 178
                 G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +    +R+   +
Sbjct: 131 LGQANSGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALSQREQAER 190

Query: 179 QLES 182
           ++ +
Sbjct: 191 RVRT 194


>gi|254521117|ref|ZP_05133172.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Stenotrophomonas sp.
           SKA14]
 gi|219718708|gb|EED37233.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Stenotrophomonas sp.
           SKA14]
          Length = 218

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ F++F+  A +S+  V++VRNP+++V  L+  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVNIAFWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL----AAELIVCASNFMVFS 116
           VYVGAV+V FLF++MMLDID         R       + +        LI   +  +   
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDPTKLREGWVRYLPVGLIVAVAMLVQMLVLIGVKARSVTPF 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                + +    +NV  + + L+T+Y  P E +  IL ++++ A++L LR R  +K Q+ 
Sbjct: 121 PADNAAAVAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNP 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q        + MVK+ +   +
Sbjct: 181 GEQTMVKAGQRLRMVKMGAEAPV 203


>gi|224109646|ref|XP_002333226.1| predicted protein [Populus trichocarpa]
 gi|224144011|ref|XP_002336100.1| predicted protein [Populus trichocarpa]
 gi|222835539|gb|EEE73974.1| predicted protein [Populus trichocarpa]
 gi|222872374|gb|EEF09505.1| predicted protein [Populus trichocarpa]
          Length = 201

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +V   +NP++SV   I  F N +GL +LLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE---- 120
           + V FLF++MM  I I        R    S  IG I   E+     N  +     +    
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTT 120

Query: 121 ------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                  +  V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           DI ++   +   +I
Sbjct: 181 DIFRRNAISFRRTI 194


>gi|319407258|emb|CBI80897.1| NADH dehydrogenase I chain J [Bartonella sp. 1-1C]
          Length = 206

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 121/190 (63%), Gaps = 5/190 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            +IS+ +VV  RNP++SV  LI AF NAA LFLL GAEF+ +I LVVYVGA+ V FLF++
Sbjct: 17  MLISAVIVVAARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAIAVLFLFVV 76

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-----EGELSRLVFKGN 129
           MMLD+D    +    R    + FIGI+ A  ++       FS        + +  + +  
Sbjct: 77  MMLDVDFAELKSGTLRYAPIAAFIGIIIAIELIFVFISDSFSPVSGVHTTQPTPDLTQRT 136

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
           N + +G +LYT Y +  +ISG ILL++MIGAIVL LRHR  +KRQ I+ Q+   P+++I 
Sbjct: 137 NTQALGDILYTDYVFYFQISGLILLVAMIGAIVLTLRHRSGVKRQSIAVQVARTPESAIE 196

Query: 190 MVKVKSGKGI 199
           + KV+SGKGI
Sbjct: 197 IKKVESGKGI 206


>gi|302864910|ref|YP_003833547.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Micromonospora aurantiaca ATCC 27029]
 gi|315501195|ref|YP_004080082.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. L5]
 gi|302567769|gb|ADL43971.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora aurantiaca ATCC 27029]
 gi|315407814|gb|ADU05931.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. L5]
          Length = 256

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 95/197 (48%), Gaps = 2/197 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++ + +A++ +  +V  RN ++S   L+   +     ++L    F+ M+ ++VY 
Sbjct: 17  EEVTFWILAPLALLGAIGMVWARNAVHSALWLVLTMLCLGVFYVLQAGPFIGMVQIIVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GA+++ FLF++M++  D   +     RG  + +  +G+  A L+       +   +    
Sbjct: 77  GAIMMLFLFVLMLVGRDASDSLIETLRGQRVAAVVLGLGFAGLVGTGLYRALDGVQPVGL 136

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                  NV+ I ++L+T+Y +  E++  +L+ + +GA+VL    RR   R D    +++
Sbjct: 137 DEANGEGNVQGIARLLFTKYVFAFELTSALLITAAVGAMVLAHVERRKADRMDQIATMKA 196

Query: 183 NPDNSIVMVKVKSGKGI 199
                      K G G+
Sbjct: 197 RF-RPGNYPGPKPGPGV 212


>gi|163850508|ref|YP_001638551.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium extorquens PA1]
 gi|218529205|ref|YP_002420021.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium chloromethanicum CM4]
 gi|240137573|ref|YP_002962044.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           [Methylobacterium extorquens AM1]
 gi|254560044|ref|YP_003067139.1| NADH-quinone oxidoreductase subunit J [Methylobacterium extorquens
           DM4]
 gi|163662113|gb|ABY29480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium extorquens PA1]
 gi|218521508|gb|ACK82093.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium chloromethanicum CM4]
 gi|240007541|gb|ACS38767.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           [Methylobacterium extorquens AM1]
 gi|254267322|emb|CAX23154.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           [Methylobacterium extorquens DM4]
          Length = 206

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   + FFYLF+  A+ S F+V+  RNP+ SV  LI AFVNAAGLF+L+GAEF+AMI +V
Sbjct: 1   MTAAAAFFYLFAGFAVASGFMVIAARNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D     +  ++   +G     I   EL++    + +     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAALRQGFQRYLPIGGLIGAIFLIELVLVVGTWTIDPGLV 120

Query: 120 EL----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +     +       N E +G+VLYT Y Y  +I+G ILL++MIGAIVL LR R  +KRQ+
Sbjct: 121 QAPLGRAAHGETATNTEALGRVLYTDYVYAFQIAGLILLVAMIGAIVLTLRERTGVKRQN 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I+ Q       ++  +KV S +G+
Sbjct: 181 IAVQNARTQGMAVDTIKVPSRQGV 204


>gi|293603928|ref|ZP_06686343.1| NADH-quinone oxidoreductase subunit J [Achromobacter piechaudii
           ATCC 43553]
 gi|292817765|gb|EFF76831.1| NADH-quinone oxidoreductase subunit J [Achromobacter piechaudii
           ATCC 43553]
          Length = 218

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/195 (35%), Positives = 113/195 (57%), Gaps = 1/195 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +I++F V+T R+P+ +V  LI AF NAA L++LLGAEF+A++ ++
Sbjct: 1   MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFSNAAMLWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI ++      K        IG++    +        + A G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRMDAMRQGLKTYLPLGLVIGLVLVLEMSFVLGSTWYGA-GP 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            + +    NN   +G+ +YTQY Y +E+   +LL+ M+ A+ L LR RRD+K  D    +
Sbjct: 120 QAPVAGDYNNARALGEAMYTQYIYAVEVGAALLLVGMVAAVALTLRRRRDVKYNDPVAAV 179

Query: 181 ESNPDNSIVMVKVKS 195
                +   MVK+ +
Sbjct: 180 RVRSKDRFRMVKMPA 194


>gi|289641418|ref|ZP_06473582.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia
           symbiont of Datisca glomerata]
 gi|289508754|gb|EFD29689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia
           symbiont of Datisca glomerata]
          Length = 277

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 2/173 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             ++  F++ + +A++++  +V  RN ++    L+      A  ++L  A F+  + +VV
Sbjct: 18  TGEAATFWVLAPVAVLAALGMVLARNAVHGALLLVTNLFCLAVFYMLQDAPFLGFVQIVV 77

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVC-ASNFMVFSAEG 119
           Y GA++V FLF++M++ +D   +     RG  + +  +G+  A L+V      +      
Sbjct: 78  YTGAIMVLFLFVLMLVGVDSSDSLVETLRGQRVAAIVLGVGFAGLLVFPIGGVIDNGTTA 137

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                   G N++ I ++L+T Y +  EI   +L+++ +GA++L  R R D K
Sbjct: 138 AGLAAANDGGNIQAIARLLFTDYVFAFEIISALLIIAAVGAMILGHRERVDGK 190


>gi|182436768|ref|YP_001824487.1| NADH dehydrogenase subunit J [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326777363|ref|ZP_08236628.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465284|dbj|BAG19804.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657696|gb|EGE42542.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           cf. griseus XylebKG-1]
          Length = 288

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 97/194 (50%), Gaps = 7/194 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V ++  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 14  EAIQFWILGTVAVIGALSTVLLKRAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVYT 73

Query: 64  GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GA+++ FLF++M++ +     + E  K + +L           LI    N  + + EG  
Sbjct: 74  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALGCGLGFGILLIAGIGNASLSTFEGLG 133

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +     G N+E +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    +++ 
Sbjct: 134 AANAAHGGNIEGLANLIFTKYVFAFEITGALLITATVGAMVLTHRERTE--RAKTQREMS 191

Query: 182 SNPDNSIVMVKVKS 195
              +  +    +  
Sbjct: 192 ---EERVRGKHLPP 202


>gi|148259941|ref|YP_001234068.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Acidiphilium
           cryptum JF-5]
 gi|146401622|gb|ABQ30149.1| NADH dehydrogenase subunit J [Acidiphilium cryptum JF-5]
          Length = 216

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY+F+ + ++S+ +V+T RNP++SV  LI AF+NA  LF+L GAEF+AM+ ++VYVG
Sbjct: 4   TLAFYVFAAILLLSACMVITARNPVHSVLFLILAFINAGALFVLAGAEFLAMVLVIVYVG 63

Query: 65  AVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           AV V FLF++MMLD+D     E  ++   LG     IL  E+   A  + +  A    S+
Sbjct: 64  AVAVLFLFVVMMLDVDFAALREGFQRYAPLGLLIGFILMVEIGAVAIGWTITPAAHLASQ 123

Query: 124 LVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +      +N   +G ++YT+Y +  E+   +LL++MIGAIVL     R  +RQDIS Q +
Sbjct: 124 VPMPAHLSNTAALGDLIYTRYMFAFELVALLLLVAMIGAIVLTHSGERRSRRQDISMQHQ 183

Query: 182 SNPDNSIVMVKVKSGKG 198
              D ++ MVK+  GKG
Sbjct: 184 RPIDETLTMVKLGIGKG 200


>gi|225024113|ref|ZP_03713305.1| hypothetical protein EIKCOROL_00981 [Eikenella corrodens ATCC
           23834]
 gi|224943138|gb|EEG24347.1| hypothetical protein EIKCOROL_00981 [Eikenella corrodens ATCC
           23834]
          Length = 225

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 113/198 (57%), Gaps = 3/198 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FYL + + +  +   VTV+NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MNFQLILFYLLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MML+ID+E       R    +  +G+L   A +++  +     +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDVEEMRKGFWRNAPVAAVVGVLMAVALIMILVAPATDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G+++ +    +NV  +G  +YT Y  P E++  +L+L M+ AI L+ R     K  + + 
Sbjct: 121 GQMNDVPADHSNVRELGTQIYTTYLLPFELAAVLLVLGMVAAIALVHRKTFKPKYINPAD 180

Query: 179 QLESNPDN-SIVMVKVKS 195
           Q++ +     + MVK+++
Sbjct: 181 QVKVDAKKGRLRMVKMEA 198


>gi|56791566|gb|AAW30321.1| NADH dehydrogenase subunit 6 [Philodendron hederaceum var.
           oxycardium]
          Length = 182

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 11/182 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+   
Sbjct: 1   VLSSPALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLILLGLDFSAMIFPVVHIGAIAAS 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124
           FLF++MM +I I        R    S  IG IL  E+     N  +       +      
Sbjct: 61  FLFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120

Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                 V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ +
Sbjct: 121 TVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFR 180

Query: 179 QL 180
           + 
Sbjct: 181 RN 182


>gi|164420978|ref|YP_001648600.1| NADH dehydrogenase subunit 6 [Xestospongia muta]
 gi|158938983|gb|ABW83907.1| NADH dehydrogenase subunit 6 [Xestospongia muta]
          Length = 187

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/180 (41%), Positives = 104/180 (57%), Gaps = 4/180 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+   IIS  +V++  +P+YSV  LI AFV+A+ LF+LL  EF+A I L+VYVGA+
Sbjct: 4   LFYLFTLGVIISGIMVISALSPVYSVLWLIMAFVSASALFILLEVEFIAFIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IMML++  E             F IG++    I    N     ++  L  +V 
Sbjct: 64  AILFLFVIMMLNLTEETIGDDMSNYLPAGFIIGVVFLFEIFIFWNGTTDGSQMVLYWVV- 122

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI---KRQDISKQLESN 183
           K  N+E +G+VLYT Y Y   ++ FILL++MIGAIVL      +I   KRQDI  Q    
Sbjct: 123 KNTNIEVLGRVLYTDYYYLFIVASFILLVAMIGAIVLTHDTGTEIQDRKRQDIFVQTSRQ 182


>gi|294670449|ref|ZP_06735331.1| hypothetical protein NEIELOOT_02168 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307913|gb|EFE49156.1| hypothetical protein NEIELOOT_02168 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 225

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 3/198 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FYL + + +  +   VTV+NP+++   L+  F  +A +++L+ AEF+ +  +V
Sbjct: 1   MNFQLILFYLLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MML+ID+E       R    +  +G+L   A +++  +     +A 
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDVEEMRKGFWRNAPVAAVVGVLMAVALIMILVAPATDLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G+++ +    +NV  +G  +YT Y  P E++  +L+L M+ AI L+ R     K  + + 
Sbjct: 121 GQMNDVPADHSNVRELGTQIYTTYLLPFELAAVLLVLGMVAAIALVHRKTFKPKYINPAD 180

Query: 179 QLESNPDN-SIVMVKVKS 195
           Q++ + +   + MVK+++
Sbjct: 181 QVKVDANKGRLRMVKMEA 198


>gi|86739260|ref|YP_479660.1| NADH dehydrogenase subunit J [Frankia sp. CcI3]
 gi|86566122|gb|ABD09931.1| NADH dehydrogenase subunit J [Frankia sp. CcI3]
          Length = 267

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 3/199 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             ++  F++ S +A++++  +V VR+ ++S   L+      A  +L+  A F+  + ++V
Sbjct: 17  TGEAATFWILSPVAVLAALGMVMVRSAVHSALLLVANLFCVAVFYLIQEAPFLGFVQIIV 76

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGE 120
           Y GA++V FLF++M++ +D   +     RG  LG+   G+  A L+       +     +
Sbjct: 77  YAGAIMVLFLFVLMLVGVDSSDSLVETIRGQRLGAIVFGLGFAGLLAFPIGSAIDGGSAK 136

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                  G NV+ IG++L+T Y +  E    +L+++ IG +VL  R R   +     ++ 
Sbjct: 137 GLSEANTGGNVQAIGRLLFTDYVFVFEAISALLVVAAIGTMVLGHREREGGRIS--QREW 194

Query: 181 ESNPDNSIVMVKVKSGKGI 199
                     V    G G+
Sbjct: 195 MRRRFTEGRQVTPLPGPGV 213


>gi|285017801|ref|YP_003375512.1| NADH-quinone oxidoreductase chain j (nadh dehydrogenaseI chain j)
           (ndh-1, chain j) oxidoreductase [Xanthomonas albilineans
           GPE PC73]
 gi|283473019|emb|CBA15524.1| probable nadh-quinone oxidoreductase chain j (nadh dehydrogenaseI
           chain j) (ndh-1, chain j) oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 216

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 109/201 (54%), Gaps = 4/201 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ F++F+ +A +++  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVNIAFWIFATIAAVAAGAVISVRNPVYAVLCLILTFFSIACVWLLVGAEFLGVTLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA----ELIVCASNFMVFS 116
           VYVGAV+V FLF++MMLDID         R       + +        LI   +  +   
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDSVRLREGWVRYLPVGLAVALAMLVQMVTLIGVKARTVAPF 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K L+TQ+  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 121 PADNAAAQAADTSNIAWLAKTLFTQFLLPFEFAAIILTVAVVAAVMLTLRKRTGIKTQNP 180

Query: 177 SKQLESNPDNSIVMVKVKSGK 197
            +Q      + + MVK+ + K
Sbjct: 181 GEQSRVKAGDRLRMVKMDAEK 201


>gi|162279922|ref|NP_064048.2| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris]
 gi|323435072|ref|YP_004222290.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima]
 gi|87248042|gb|ABD36075.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris]
 gi|148491425|dbj|BAA99358.2| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris]
 gi|317905725|emb|CBJ14110.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima]
 gi|319439805|emb|CBJ17517.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima]
          Length = 205

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|311104667|ref|YP_003977520.1| NADH-quinone oxidoreductase subunit J [Achromobacter xylosoxidans
           A8]
 gi|310759356|gb|ADP14805.1| NADH-quinone oxidoreductase subunit J [Achromobacter xylosoxidans
           A8]
          Length = 216

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/195 (34%), Positives = 112/195 (57%), Gaps = 1/195 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +I++F V+T R+P+ +V  LI AF NAA L++LLGAEF+A++ ++
Sbjct: 1   MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFSNAAMLWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI ++      K        IG++    +        + A G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRMDALRQGMKTYLPLGLIIGLVMVLEMAFVLGSTWYGA-GP 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            + +    NN   +G+ +YTQY Y +E+   +LL+ M+ AI L LR RRD+K  D    +
Sbjct: 120 QAPVAGDYNNARALGEAMYTQYVYAIEVGAALLLVGMVAAIALTLRRRRDVKYNDPVAAV 179

Query: 181 ESNPDNSIVMVKVKS 195
                +   +V + +
Sbjct: 180 RVRAKDRFRLVSMPA 194


>gi|307101736|ref|YP_003875484.1| NADH dehydrogenase subunit 6 [Silene latifolia]
 gi|301338031|gb|ADK73323.1| NADH dehydrogenase subunit 6 [Silene latifolia]
          Length = 205

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|317134340|ref|YP_004123126.1| NADH dehydrogenase subunit 6 [Oscarella microlobata]
 gi|308912655|gb|ADO51418.1| NADH dehydrogenase subunit 6 [Oscarella microlobata]
          Length = 197

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY+F+   IIS  +V++  NPI+SVF LI  F+ A+ LF+LLG +F+A+I L+VYVG +
Sbjct: 4   LFYMFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGXI 63

Query: 67  IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-------- 117
            + FLF+IMML++ D+E          +GS    +L  E+++       +S         
Sbjct: 64  AILFLFVIMMLNLTDLEGGGDMSNYIPIGSVIGVLLLFEVLIMGREATAYSYRDIDHECL 123

Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  + S  + K +N+E +G+VLYT Y Y   I+ FILL++MIGAIVL      ++K
Sbjct: 124 KGGVDAWDTSIEIIKSSNIEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHELGAELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q   +
Sbjct: 184 RQDLFIQTSRS 194


>gi|83416415|gb|ABC18241.1| NADH dehydrogenase subunit 6 [Brassica oleracea var. botrytis]
          Length = 201

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|110816045|ref|YP_684376.1| NADH dehydrogenase subunit 6 [Oltmannsiellopsis viridis]
 gi|86450256|gb|ABC96335.1| NADH dehydrogenase subunit 6 [Oltmannsiellopsis viridis]
          Length = 207

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 17/204 (8%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +  FYLFS +A+IS+  V   +NP++SV  LI  F NA+GL +L+G +F+A+I ++VYVG
Sbjct: 2   NFLFYLFSSLALISAVFVTQAKNPVHSVLFLILVFFNASGLLILMGLDFIALILMIVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG----- 119
           A+   FLF++M+LDI  E    ++ R       +G+L    I       +          
Sbjct: 62  AITTLFLFVVMLLDIKTEEVSEKRLRYLPIGGLLGVLFLVQIFVVIENSLVPHWVHVPFT 121

Query: 120 ------------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                       + + L     N+E +G+VLYT Y+    ++ F+LL++MIG+IVL +  
Sbjct: 122 NNPVILDHLQYLKWNTLTDNYTNIEALGQVLYTVYSLHFILASFVLLVAMIGSIVLTMVK 181

Query: 168 RRDIKRQDISKQLESNPDNSIVMV 191
              +KRQ++S+Q   +   +I  V
Sbjct: 182 GAYVKRQEVSEQNYRDFSQTIAHV 205


>gi|327195240|ref|YP_004339022.1| NADH dehydrogenase subunit 6 [Coccomyxa sp. C-169]
 gi|325070736|gb|ADY75464.1| NADH dehydrogenase subunit 6 [Coccomyxa sp. C-169]
          Length = 205

 Score =  150 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 16/198 (8%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY FS +A+IS  +V+  RNP++SV  LI  F N+AGL +LLG EF AMI LVVYVGA+
Sbjct: 4   LFYFFSSLALISGVMVIQARNPVHSVLFLILVFFNSAGLLVLLGLEFFAMIFLVVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE------ 120
            V FLF++MML+I +     ++ R       +G+L    I    +  +    G       
Sbjct: 64  AVLFLFVVMMLNIKLAEISEKRLRYLPIGGLLGMLFLGEIFLIVDNDLIPWLGSAHLSEW 123

Query: 121 ----------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                      S L      +E +G ++YT Y Y   ++  ILL++MIGAIVL L     
Sbjct: 124 AELSAMEWTPWSHLAEGVTPLEGVGVIIYTYYFYFFLLASLILLVAMIGAIVLTLHKGVA 183

Query: 171 IKRQDISKQLESNPDNSI 188
           +K Q++  Q       ++
Sbjct: 184 VKHQEVFHQNSREFAKTV 201


>gi|54606785|dbj|BAD66808.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris]
          Length = 205

 Score =  150 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDSRRTI 194


>gi|240850592|ref|YP_002971992.1| NADH dehydrogenase I subunit J [Bartonella grahamii as4aup]
 gi|240267715|gb|ACS51303.1| NADH dehydrogenase I subunit J [Bartonella grahamii as4aup]
          Length = 206

 Score =  150 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 81/190 (42%), Positives = 124/190 (65%), Gaps = 5/190 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + + S+ +V+T RNP++SV  LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF+
Sbjct: 16  IMLTSAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFV 75

Query: 74  IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRLVFKG 128
           +MMLD+D  E+     +   +G+    I+A ELIV   +     ++ +   +    + + 
Sbjct: 76  VMMLDVDFAELKSGTLRYAPIGALIGVIIAVELIVVFVSSYFSPVLRTHVTQPMPDLTQR 135

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188
            N + +G +LYT Y +  +I+G ILL++MIGAIVL LRH+  +KRQ I++Q+    +++I
Sbjct: 136 TNTQALGDILYTDYVFYFQIAGMILLVAMIGAIVLTLRHKLGVKRQSIAEQVSRTVESAI 195

Query: 189 VMVKVKSGKG 198
            + +V+SGKG
Sbjct: 196 EIKQVESGKG 205


>gi|124286766|ref|YP_001023660.1| NADH dehydrogenase subunit 6 [Savalia savaglia]
 gi|110083985|gb|ABG49162.1| NADH dehydrogenase subunit 6 [Savalia savaglia]
          Length = 221

 Score =  150 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 36/221 (16%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FY  SF AI S  +V++  NP++SVF L+ AF +++ LF+LLGA+F+A++ L+VY
Sbjct: 1   MTWACFYTLSFGAIASGIMVISALNPVHSVFWLVVAFTSSSALFILLGADFIALMFLIVY 60

Query: 63  VGAVIVFFLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           VGA+ + FLF+IMML++           + ++         +G+ F   +A+  ++   +
Sbjct: 61  VGAIAILFLFVIMMLNLTDFPPAYRLGGETDMTNYVPVGLAIGTLFFSEIASSWLIMGGH 120

Query: 112 FMVFSAEGELS---------------------RLVFKGNNVENIGKVLYTQYAYPLEISG 150
             +    G  +                       + K +N+E IG++LYT Y Y   ++ 
Sbjct: 121 SALAGPFGAATSGHASALRPLELGGNWNLANPWFLIKCHNIEAIGRLLYTDYYYLFILAS 180

Query: 151 FILLLSMIGAIVLMLRHRRDI----KRQDISKQLESNPDNS 187
           FILL++MIGAIVL      +I    K+QDI  Q+   P+ +
Sbjct: 181 FILLVAMIGAIVLTQEIGEEIGATAKKQDIFLQISRAPEGA 221


>gi|49475649|ref|YP_033690.1| NADH dehydrogenase subunit J [Bartonella henselae str. Houston-1]
 gi|49238456|emb|CAF27684.1| NADH dehydrogenase I, J subunit [Bartonella henselae str.
           Houston-1]
          Length = 206

 Score =  150 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 81/191 (42%), Positives = 123/191 (64%), Gaps = 5/191 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + + S+ +V+T RNP++SV  LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF+
Sbjct: 16  IMLASAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFV 75

Query: 74  IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRLVFKG 128
           +MMLD+D  E+     +   +G+    I+A ELIV         ++ +   +    + + 
Sbjct: 76  VMMLDVDFAELKSGTLRYAPIGALVGSIVAVELIVVFVGSRFSPVLRAHVMQPMPDLAQK 135

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188
            N + +G +LYT Y +  +I+G ILL++MIGAI+L LRH+  +KRQ I+ Q+    +N+I
Sbjct: 136 TNTQALGDILYTDYVFYFQIAGIILLVAMIGAIILTLRHKSGVKRQSIAVQVSRKVENAI 195

Query: 189 VMVKVKSGKGI 199
            + +++SGKGI
Sbjct: 196 EIKQIESGKGI 206


>gi|170748468|ref|YP_001754728.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654990|gb|ACB24045.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium radiotolerans JCM 2831]
          Length = 206

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 126/204 (61%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   + FFYLF+ + + S F+V+  RNP+ SV  LI AFVNAAGLF+L+GAEF+AMI +V
Sbjct: 1   MTAAAAFFYLFASITVASGFMVIASRNPVASVLFLILAFVNAAGLFVLMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D  E+ +  ++   +G+    I   EL++   ++ +     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELRQGFQQYLPIGALIGAIFLVELLLVVGSWSIDPGLV 120

Query: 120 ELS----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +             N + +G+V+YT YAY  +++G ILL++MIGAIVL LR R  +KRQ 
Sbjct: 121 QAPLGNVAAAENLTNAQALGRVIYTDYAYFFQLAGLILLVAMIGAIVLTLRDRPGVKRQS 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I+ Q       ++   KV S +G+
Sbjct: 181 IAVQNARTQAMAVETRKVPSRQGV 204


>gi|296283849|ref|ZP_06861847.1| NADH dehydrogenase I, J subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 206

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 80/203 (39%), Positives = 117/203 (57%), Gaps = 6/203 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++ FYLF+ M I S  L +  RNP++SV  LI AF NAAGL +LLGAEF+AM+ +VVY
Sbjct: 2   IQAIAFYLFATMVIASGVLTIMSRNPVHSVLWLILAFFNAAGLMVLLGAEFIAMLLVVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAELIVCASNFMVFSA 117
           VGAV V FLF++MMLD+D+        + F     I       L   +    +  +    
Sbjct: 62  VGAVAVLFLFVVMMLDVDMAELRAGFIKNFPLGIAIALVLLAELVLGIGALGAGPLELGT 121

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDI 176
               +      +N+ENIG +LY++Y +  E +G ILL++MIGAIVL  R  +     Q+I
Sbjct: 122 ASGANAPNLANSNIENIGALLYSKYIFVFEAAGLILLVAMIGAIVLTHRDLKTTRGHQNI 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
           +KQ+  NP  +  M +   G+G+
Sbjct: 182 TKQVRRNPKEATQMKQPTVGEGV 204


>gi|49474186|ref|YP_032228.1| NADH dehydrogenase subunit J [Bartonella quintana str. Toulouse]
 gi|49239690|emb|CAF26065.1| NADH dehydrogenase I, J subunit [Bartonella quintana str. Toulouse]
          Length = 206

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 80/191 (41%), Positives = 118/191 (61%), Gaps = 5/191 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + + S+ +V+T RNP++SV  LI AF NAA LFLL GAEF+ +I L+VYVGAV V FLF+
Sbjct: 16  IMLASAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLIVYVGAVAVLFLFV 75

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-----EGELSRLVFKG 128
           IMMLD+D    +    R      FIG++ A  ++       FS        +    + + 
Sbjct: 76  IMMLDVDFAELKSGALRYAPIGAFIGVVVAVELIFVFVSSHFSPVVRTHVTQPMPNLAQR 135

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188
            N + +G +LYT Y +  +++G ILL++MIGAIVL LRH+  ++RQ I+ Q+     N+I
Sbjct: 136 TNTQALGDILYTDYVFYFQVAGIILLVAMIGAIVLTLRHKSGVRRQSIAVQVSRTVANAI 195

Query: 189 VMVKVKSGKGI 199
            + +V+SGKGI
Sbjct: 196 EIKQVESGKGI 206


>gi|317401997|gb|EFV82597.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 216

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 68/195 (34%), Positives = 111/195 (56%), Gaps = 1/195 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ + + +I++F V+T R+P+ +V  LI AF NAA L++LLGAEF+A++ ++
Sbjct: 1   MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI ++      K        IG++    +        + A G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRMDALRQGMKTYLPLGLVIGLVMVLEMAFVLGSTWYGA-GP 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            + +    NN   +G+ +YT Y Y +E+   +LL+ M+ AI L LR RRD+K  D    +
Sbjct: 120 QAPVAGDYNNARALGEAMYTHYIYAIEVGAALLLVGMVAAIALTLRRRRDVKYNDPVAAV 179

Query: 181 ESNPDNSIVMVKVKS 195
                +   MV + +
Sbjct: 180 RVRSKDRFRMVSMPA 194


>gi|33592016|ref|NP_879660.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis
           Tohama I]
 gi|33597902|ref|NP_885545.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella parapertussis
           12822]
 gi|33602807|ref|NP_890367.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella bronchiseptica
           RB50]
 gi|33571660|emb|CAE41153.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis
           Tohama I]
 gi|33574331|emb|CAE38667.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella parapertussis]
 gi|33577249|emb|CAE35806.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella bronchiseptica
           RB50]
 gi|332381432|gb|AEE66279.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis CS]
          Length = 215

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 72/195 (36%), Positives = 114/195 (58%), Gaps = 1/195 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+ +F+ +I++F V+T R+P+ +V  LI AF NAA +++LLGAEF+A++ ++
Sbjct: 1   MTFTTVLFYILAFVLVIAAFRVITARSPVTAVLHLILAFANAAMIWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI I+      K        IG++    +        + A G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRIDSLRDGLKTYLPLGLVIGVVLVLEMAFVLGSTWYGA-GP 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            + +    NN   +G+V+YTQY Y +E+   +LL+ M+ AI L LR RRD K  D    +
Sbjct: 120 QAPVAGDYNNARALGEVMYTQYVYAIEVGAALLLVGMVAAIALTLRRRRDAKYNDPVAAV 179

Query: 181 ESNPDNSIVMVKVKS 195
                +   MVK+ +
Sbjct: 180 RVRAKDRFRMVKMTA 194


>gi|258651225|ref|YP_003200381.1| NADH dehydrogenase subunit J [Nakamurella multipartita DSM 44233]
 gi|258554450|gb|ACV77392.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nakamurella
           multipartita DSM 44233]
          Length = 293

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 95/199 (47%), Gaps = 6/199 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++ + +A++ +  +V  ++ ++S   L+   ++   L++   AEF+  + ++VY 
Sbjct: 26  ELIAFWILAPLAVLGAIGMVFSKSAVHSALWLVLTMLSLGCLYINQNAEFLGFVQIIVYT 85

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG-EL 121
           GA+++ FLF++M+   D   +     R   + +  +GI    L+V      + +     L
Sbjct: 86  GAIMMLFLFVLMLTGRDSGDSTFEVLRKQRIVAIVLGIGFVVLLVTGLLRALKAVPAVGL 145

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           S        +  I ++L+T Y +P E++  +L+ +  GA+VL    +   +R+   +++ 
Sbjct: 146 SGAYADRGPLGAIAELLFTDYLFPFELTSALLITAATGAMVLTHIEKAPGERKSQGQRVR 205

Query: 182 SN-PDNSIVMVKVKSGKGI 199
                + +       G G+
Sbjct: 206 ERMRSDRM---SPLPGPGV 221


>gi|317134245|ref|YP_004123489.1| NADH dehydrogenase subunit 6 [Halisarca sp. DVL-2010]
 gi|315141536|gb|ADT81740.1| NADH dehydrogenase subunit 6 [Halisarca sp. DVL-2010]
          Length = 191

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/184 (38%), Positives = 98/184 (53%), Gaps = 7/184 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+   I S  +V++  NP++SV  LIFAF NA+ LF+LL  EF+A I L+VYVGA+
Sbjct: 4   LFYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEV--AEPRKKRGFLGSFFIGILAAELIVCASN-----FMVFSAEG 119
            + FLF+IMML++                    IG +    I+   N     ++      
Sbjct: 64  AILFLFVIMMLNLTDFGYNINSDMSNYLPAGLVIGTVFLFEILIWHNHSEGYYLSSDCVP 123

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                V    N+E IG+VLYT + Y   ++ FILL++MIGAIVL      DI+RQDI  Q
Sbjct: 124 IYYNCVISSPNIEIIGRVLYTDFYYLFLLASFILLVAMIGAIVLTHEINIDIRRQDIFIQ 183

Query: 180 LESN 183
               
Sbjct: 184 TSRQ 187


>gi|297192778|ref|ZP_06910176.1| NADH dehydrogenase subunit J [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721033|gb|EDY64941.1| NADH dehydrogenase subunit J [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 279

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 93/185 (50%), Gaps = 4/185 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +   + ++  ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 11  TGEAVQFWVLGTIAVIGALCTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVV 70

Query: 62  YVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +     + E  K + +L +         LI    N  + +  G
Sbjct: 71  YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGILLIAGIGNASLKNFNG 130

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    ++
Sbjct: 131 LGAANSAHGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RAKTQRE 188

Query: 180 LESNP 184
           L    
Sbjct: 189 LSEQR 193


>gi|239943485|ref|ZP_04695422.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998]
 gi|239989939|ref|ZP_04710603.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 11379]
 gi|291446956|ref|ZP_06586346.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998]
 gi|291349903|gb|EFE76807.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998]
          Length = 289

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 91/172 (52%), Gaps = 2/172 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   V ++  ++S  SL    +  A  +L  GA F+ ++ ++VY 
Sbjct: 14  EAIQFWILGTVAVIGALSTVLMKKAVHSALSLAGTMIILAVFYLANGAYFLGIVQIIVYT 73

Query: 64  GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GA+++ FLF++M++ +     + E  K + +L +         LI    N  + +  G  
Sbjct: 74  GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAGCSLGFGILLIAGIGNASLSTFNGLG 133

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R
Sbjct: 134 AANAQHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMVLTHRERTERAR 185


>gi|112253907|ref|YP_717162.1| NADH dehydrogenase subunit 6 [Brassica napus]
 gi|37591109|dbj|BAC98911.1| NADH dehydrogenase subunit 6 [Brassica napus]
          Length = 205

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S +A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|320148706|emb|CBJ23344.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima]
          Length = 205

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSLALVSGLMVVRAQNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|302553435|ref|ZP_07305777.1| NADH dehydrogenase subunit J [Streptomyces viridochromogenes DSM
           40736]
 gi|302471053|gb|EFL34146.1| NADH dehydrogenase subunit J [Streptomyces viridochromogenes DSM
           40736]
          Length = 280

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 92/198 (46%), Gaps = 2/198 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +   + ++  ++S   L    +  A  +L  GA F+ ++ ++V
Sbjct: 12  TGEAVQFWILGTVAVIGALGTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVVQIIV 71

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L   +++ A        E   
Sbjct: 72  YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGILLFAGIGNASLKEFNG 131

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                 G NV+ I  +L+T+Y +  EI+G +L+ + +GA+VL  R R +  R    ++L 
Sbjct: 132 IGQANAGGNVQGIAALLFTRYVFAFEITGALLITAAVGAMVLTHRERTE--RAKTQRELA 189

Query: 182 SNPDNSIVMVKVKSGKGI 199
                    +      G+
Sbjct: 190 EERVREGKYMPPLPAPGV 207


>gi|261599936|dbj|BAI45219.1| NADH dehydrogenase [Dianthus japonicus]
          Length = 205

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDSRRTI 194


>gi|256785932|ref|ZP_05524363.1| NADH dehydrogenase subunit J [Streptomyces lividans TK24]
 gi|289769825|ref|ZP_06529203.1| NuoJ [Streptomyces lividans TK24]
 gi|289700024|gb|EFD67453.1| NuoJ [Streptomyces lividans TK24]
          Length = 285

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 93/184 (50%), Gaps = 2/184 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +   V ++  ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 17  TGEAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 76

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L   +++ A       +E   
Sbjct: 77  YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGILLIAGIGNASVSEFTG 136

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDISKQ 179
                   NVE I  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R  +++S+Q
Sbjct: 137 LAQANANGNVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQRELSEQ 196

Query: 180 LESN 183
              +
Sbjct: 197 RIRD 200


>gi|187477550|ref|YP_785574.1| NADH dehydrogenase I subunit J [Bordetella avium 197N]
 gi|115422136|emb|CAJ48660.1| NADH dehydrogenase I chain J [Bordetella avium 197N]
          Length = 210

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 121/198 (61%), Gaps = 7/198 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   S+ FYL +F+ ++++F V+T R+P+ +V  LI AF NAA L++LLGAEF+A++ ++
Sbjct: 1   MTFTSVLFYLLAFVLVVAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI I+      + G      +G++   ++V    F++F+  G+
Sbjct: 61  VYVGAVMVLFLFVVMMLDIRID----HLRHGLKTYLPLGLIIGGIMVVEMGFVLFTTWGD 116

Query: 121 LSRLVF---KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               V      NN   +G+ +YTQY + +E+   +LL+ M+ AI L LR RRD K  D +
Sbjct: 117 AGPQVVMAGDYNNARALGEAMYTQYVFGVEVGAALLLVGMVAAIALTLRRRRDAKYNDPA 176

Query: 178 KQLESNPDNSIVMVKVKS 195
             +     +   MVK+++
Sbjct: 177 AAVRVRAKDRFRMVKMQA 194


>gi|332968225|gb|EGK07302.1| NADH-quinone oxidoreductase subunit J [Kingella kingae ATCC 23330]
          Length = 215

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 3/198 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY+F+ + +  +   VT +NP+++   L+  F  +A ++LL+ AEF+ +  +V
Sbjct: 1   MTFSLVLFYMFAAIILYGALQTVTAKNPVHATLHLVLTFCVSAMMWLLMQAEFLGITLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118
           VYVGAV+V FLF++MML+ID E       R    +  +G+L A ++  V  +     +  
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDAEEMRKGFWRHAPAALTVGVLMAAVLIAVLVAPDTALNQF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    +NV ++GK LYT Y +  E++  +L+L M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYSNVRDLGKQLYTTYVWQFELAAVLLVLGMVAAIALVHRKSTNPKRIDPAD 180

Query: 179 QLESNPDN-SIVMVKVKS 195
           Q++ N     + MVK++S
Sbjct: 181 QVKVNAAEGRMRMVKMES 198


>gi|302559098|ref|ZP_07311440.1| NADH dehydrogenase I, J subunit [Streptomyces griseoflavus Tu4000]
 gi|302476716|gb|EFL39809.1| NADH dehydrogenase I, J subunit [Streptomyces griseoflavus Tu4000]
          Length = 280

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 91/198 (45%), Gaps = 2/198 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             ++  F++   +A+I +   V +R  ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 12  TGEAFQFWVLGTVAVIGALCTVFMRRAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVV 71

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L   +++         +E   
Sbjct: 72  YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGVLLVGGIGNASLSEFNG 131

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                 G NVE +  +L+T+Y +  EI+G +L+ + +GA+VL  R R +  R    ++L 
Sbjct: 132 LGEANAGGNVEGLAALLFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RARTQRELA 189

Query: 182 SNPDNSIVMVKVKSGKGI 199
                    +      G+
Sbjct: 190 EQRVREGKYLPPLPAPGV 207


>gi|320009195|gb|ADW04045.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 284

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 97/194 (50%), Gaps = 4/194 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A++ +   V ++  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 16  EAVQFWILGTVAVVGALSTVLMKKAVHSALSLAGTMIVLAVFYLANGAYFLGIVQVVVYT 75

Query: 64  GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GA+++ FLF++M++ +     + E  K + +L +         LI       + S  G  
Sbjct: 76  GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGILLIAGIGQASLQSFNGLG 135

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +     G NVE +  +++T+Y +  EI+G +L+ + +GA++L  R R +  R    ++L 
Sbjct: 136 AANAQHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMLLTHRERTE--RAKTQRELS 193

Query: 182 SNPDNSIVMVKVKS 195
                S  +  + +
Sbjct: 194 QERVRSSHLPPLPA 207


>gi|44889032|sp|P60497|NU6M_ARATH RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
          Length = 205

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S +A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|239929605|ref|ZP_04686558.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672]
 gi|291437929|ref|ZP_06577319.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672]
 gi|291340824|gb|EFE67780.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672]
          Length = 283

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 89/198 (44%), Gaps = 2/198 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +   V +R  ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 12  TGEAVQFWVLGTIAVIGALCTVFMRRAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 71

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L    ++          E   
Sbjct: 72  YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGTLLITGIGHASLGEFNG 131

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NVE I  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    ++L 
Sbjct: 132 IGQANANGNVEGIASLIFTRYVFAFEITGILLITAAVGAMVLTHRERTE--RARTQRELA 189

Query: 182 SNPDNSIVMVKVKSGKGI 199
                    +      G+
Sbjct: 190 EQRVREGKYLPPLPAPGV 207


>gi|319404250|emb|CBI77843.1| NADH dehydrogenase I chain J [Bartonella rochalimae ATCC BAA-1498]
          Length = 206

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 124/190 (65%), Gaps = 5/190 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            +IS+ +VV  RNP++SV  LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF++
Sbjct: 17  MLISAVIVVVARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFVV 76

Query: 75  MMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG----ELSRLVFKGN 129
           MMLD+D  E+     K   +G+F   I+A ELI    +   F   G    + +  + +  
Sbjct: 77  MMLDVDFAELKSGTLKYAPIGAFIGIIIAIELIFVFISNSFFPVSGVHATQPTPDLTQRT 136

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189
           N + +G +LYT Y +  +ISG ILL++MIGAIVL LRHR  +KRQ I+ Q+   P+++I 
Sbjct: 137 NTQALGDILYTDYVFYFQISGLILLVAMIGAIVLTLRHRSGVKRQSIAVQVARTPESAIE 196

Query: 190 MVKVKSGKGI 199
           + KV+SGKGI
Sbjct: 197 IKKVESGKGI 206


>gi|290958251|ref|YP_003489433.1| NADH dehydrogenase subunit NuoJ [Streptomyces scabiei 87.22]
 gi|260647777|emb|CBG70882.1| NuoJ, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
          Length = 283

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 86/183 (46%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             ++  F++   +A+I +   V ++  ++S   L    V  A  +L  GA F+ ++ +VV
Sbjct: 17  TGEAFQFWVLGTVAVIGALCTVFMKRAVHSALCLAGTMVILAVFYLANGAYFLGIVQIVV 76

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +      +++ A        E   
Sbjct: 77  YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGAGFGILLIAGIGNASLTEFSG 136

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                 G NVE +  +++T Y +  E++G +L+ + +GA+VL  R R +  R    ++L 
Sbjct: 137 LGTANAGGNVEGLAALIFTDYVFAFELTGALLITAAVGAMVLTHRERTE--RPKTQRELA 194

Query: 182 SNP 184
              
Sbjct: 195 EQR 197


>gi|21222954|ref|NP_628733.1| NADH dehydrogenase subunit J [Streptomyces coelicolor A3(2)]
 gi|5042268|emb|CAB44522.1| NuoJ, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
          Length = 285

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 93/184 (50%), Gaps = 2/184 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +   V ++  ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 17  TGEAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 76

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L   +++ A       +E   
Sbjct: 77  YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGILLIAGIGNASVSEFTG 136

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDISKQ 179
                   NVE I  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R  +++S+Q
Sbjct: 137 LAQANANGNVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQRELSEQ 196

Query: 180 LESN 183
              +
Sbjct: 197 RIRD 200


>gi|164420948|ref|YP_001648461.1| NADH dehydrogenase subunit 6 [Amphimedon compressa]
 gi|158668072|gb|ABW76536.1| NADH dehydrogenase subunit 6 [Amphimedon compressa]
          Length = 184

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 4/178 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+  A IS  +V++  + ++SV  LI  F++A+ LF+LL  EF+A I L+VYVGA+
Sbjct: 4   LFYLFALGATISGIMVISAFSSVHSVLWLIMVFISASALFILLEVEFIAFIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IMML++                  IGI+    +  A +F   +  G    LV 
Sbjct: 64  AILFLFVIMMLNLTGPGMGDDMSNYLPAGLIIGIVF---LFEALSFRSTTLGGNWPLLVE 120

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQLESN 183
           K  N+E +G+VLYT Y Y   I+ FILL++MIGAIVL         K QDI  Q+   
Sbjct: 121 KAPNIEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHDEGIEKRKGQDIYIQISRQ 178


>gi|114321110|ref|YP_742793.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227504|gb|ABI57303.1| NADH dehydrogenase subunit J [Alkalilimnicola ehrlichii MLHE-1]
          Length = 198

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/195 (36%), Positives = 119/195 (61%), Gaps = 1/195 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+F+ + + ++ +V+T RNP++    L+ AF N+A L+++ GAEF+ +  +VVY
Sbjct: 1   MEQVIFYVFAAVLLFAATMVITARNPVHCALFLVLAFFNSAILWVMAGAEFLGIALVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-AAELIVCASNFMVFSAEGEL 121
           VGAV+V FLF++MMLDI   V +    R       + +L A +L +   +     A G +
Sbjct: 61  VGAVMVLFLFVVMMLDIGRSVHQEGFTRYLPAGALVAVLMAVQLGLVLVSDHTGIAGGVI 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             +    +N+  +G +LYT Y YP EI+G ILL+++I AIVL LR R   K QD++KQ+ 
Sbjct: 121 PEVPADVDNIRGLGGLLYTTYVYPFEIAGAILLVAIIAAIVLTLRRREGTKHQDVAKQVR 180

Query: 182 SNPDNSIVMVKVKSG 196
              ++ + +V +KS 
Sbjct: 181 VRREDRVRLVSMKSE 195


>gi|330465211|ref|YP_004402954.1| NADH:ubiquinone oxidoreductase subunit J [Verrucosispora maris
           AB-18-032]
 gi|328808182|gb|AEB42354.1| NADH:ubiquinone oxidoreductase subunit J [Verrucosispora maris
           AB-18-032]
          Length = 256

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 97/197 (49%), Gaps = 2/197 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +A+  +  ++  RN ++S   L+   ++    ++L    F+ M+ ++VY 
Sbjct: 17  EAVTFWILAPLALAGAIGMIAARNAVHSALWLVLTMLSLGVFYVLQAGPFIGMVQIIVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GA+++ FLF++M++  D   +     RG  + +  +G+  A L+   +       E    
Sbjct: 77  GAIMMLFLFVLMLVGRDASDSLIEVLRGQRIAAIGLGVGFAALLGSGAYRATQGTEAVGL 136

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                G NV++I ++L+T Y +  E++  +L+ + IG ++L    RR   R+D    +++
Sbjct: 137 EQANAGGNVQSIARLLFTDYIFAFELTAALLITATIGGMILAHVERRKEDRRDQVATMKA 196

Query: 183 NPDNSIVMVKVKSGKGI 199
                      K G G+
Sbjct: 197 RFAPG-NYPGPKPGPGV 212


>gi|121602205|ref|YP_989079.1| NADH dehydrogenase subunit J [Bartonella bacilliformis KC583]
 gi|120614382|gb|ABM44983.1| NADH dehydrogenase (quinone), J subunit [Bartonella bacilliformis
           KC583]
          Length = 206

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/202 (42%), Positives = 128/202 (63%), Gaps = 5/202 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + + FFYLFSF+ ++S+ +V+  RNP++SV  LI AF NAA LFLL GAEF+ ++ LVVY
Sbjct: 5   LAAAFFYLFSFIMLMSAIIVIAARNPVHSVLFLILAFFNAAALFLLAGAEFLGLLLLVVY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA-----SNFMVFSA 117
           VGAV V FLF++MMLD+D    +    +       +GI+ A  ++        + ++ + 
Sbjct: 65  VGAVAVLFLFVVMMLDVDFAELKRNAFQYVPVGALVGIIIAVELIIVFFSNDFSLILGTH 124

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
             +    +    N + +G +LYT Y +  +I+G ILL++MIGAIVL LRH+  +KRQ I 
Sbjct: 125 TTQPMPSLEHRTNTQALGDILYTDYVFYFQIAGMILLVAMIGAIVLTLRHKAGVKRQSIG 184

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
            Q+  NP+ +I + KV+SGKGI
Sbjct: 185 IQVARNPETAIEIKKVESGKGI 206


>gi|194033221|ref|YP_002000558.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|60498739|dbj|BAC19862.2| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
          Length = 205

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + AGL +LLG +F AMI LV+Y+GA
Sbjct: 1   MILSVLSSFALVSGLMVVRAKNPVHSVLFFILIFCDTAGLLILLGLDFFAMIFLVIYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM +I I        R    S  IG I   E+     N  +       +  
Sbjct: 61  IAVLFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N++ +G +LYT Y     +S  ILL++MIGAIVL +     ++RQ
Sbjct: 121 SLRYTVYAGKVRNWTNLDTLGNLLYTYYFVWFLVSTLILLVAMIGAIVLTMHRTTKVQRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNALDFRRTI 194


>gi|164420992|ref|YP_001648613.1| NADH dehydrogenase subunit 6 [Halisarca dujardini]
 gi|158668146|gb|ABW76605.1| NADH dehydrogenase subunit 6 [Halisarca dujardini]
          Length = 196

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 99/189 (52%), Gaps = 12/189 (6%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+   I S  +V++  NP++SV  LIFAF NA+ LF+LL  EF+A I L+VYVGA+
Sbjct: 4   LFYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDID-------IEVAEPRKKRGFLGSFFIGILAAELIVCASN-----FMV 114
            + FLF+IMML++           A             IGI+    I+   N     ++ 
Sbjct: 64  AILFLFVIMMLNLTPNTGGEFGPNANSDMSNYLPAGLVIGIVFLFEILIWHNHSEGYYLS 123

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E IG+VLYT + Y   ++ FILL++MIGAIVL      +I+ Q
Sbjct: 124 SGCVPVYYNCVISSPNIEIIGRVLYTDFYYLFLLASFILLVAMIGAIVLTHDINTEIRXQ 183

Query: 175 DISKQLESN 183
           DI  Q    
Sbjct: 184 DIFIQTSRQ 192


>gi|224020958|ref|YP_002608191.1| NADH dehydrogenase subunit 6 [Carica papaya]
 gi|170522370|gb|ACB20480.1| NADH dehydrogenase subunit 6 [Carica papaya]
          Length = 205

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 11/190 (5%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V 
Sbjct: 5   VLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVS 64

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124
           FLF++MM  I          R    S  IG IL  E+     N  +     + +      
Sbjct: 65  FLFVVMMFHIQKAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRY 124

Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                 V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ +
Sbjct: 125 TVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFR 184

Query: 179 QLESNPDNSI 188
           +   +   +I
Sbjct: 185 RNAISFRRTI 194


>gi|294630805|ref|ZP_06709365.1| NADH dehydrogenase I, J subunit [Streptomyces sp. e14]
 gi|292834138|gb|EFF92487.1| NADH dehydrogenase I, J subunit [Streptomyces sp. e14]
          Length = 280

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 2/198 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             ++  F++   +A+I +   V +R  ++S  SL    +  A  +L  GA F+ ++ +VV
Sbjct: 12  TGEAFQFWVLGTVAVIGALCTVFMRKAVHSALSLAGTMIILAVFYLANGAYFLGIVQIVV 71

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L   +++ A        +   
Sbjct: 72  YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGILLVAGIANASLKDFAG 131

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +       NVE +  +++T+Y Y  E++G +L+ + IGA+VL  R R +  R    ++L 
Sbjct: 132 AGKANANGNVEGLASLIFTRYVYAFELTGALLITATIGAMVLTHRERTE--RAKTQRELA 189

Query: 182 SNPDNSIVMVKVKSGKGI 199
                    V      G+
Sbjct: 190 EQRVREGKHVPPLPAPGV 207


>gi|220924014|ref|YP_002499316.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium nodulans ORS 2060]
 gi|219948621|gb|ACL59013.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium nodulans ORS 2060]
          Length = 206

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/204 (40%), Positives = 126/204 (61%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   + FFYLF+ + + S F+V+  RNP+ SV  LI AFVNAAGLF+L+GAEF+AMI +V
Sbjct: 1   MTAAAAFFYLFAAITVASGFMVIASRNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV V FLF++MMLD+D  E+ +  +    +G+    +   EL++   ++ +     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELRQGFQDYLPVGALIGAVFLVELLLVVGSWAIDPGLV 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           +    V  G     N + +G VLYT Y +  +I+G +LL++MIGAIVL LR R  +KRQD
Sbjct: 121 QAPLAVAPGGDRITNTQALGLVLYTNYFFFFQIAGLVLLVAMIGAIVLTLRERPGVKRQD 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           ++ Q       ++ +  V + +G+
Sbjct: 181 VTVQNARTQAMAVELRNVPTRQGV 204


>gi|9280602|gb|AAF86489.1|AF279442_1 NADH dehydrogenase subunit 6 [Lupinus luteus]
          Length = 205

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE---- 120
           + V FLF++MM  I I        R    S  IG I   E+     N  +     +    
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTT 120

Query: 121 ------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                  +  V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTQVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|224365671|ref|YP_002608398.1| NADH dehydrogenase subunit 6 [Vitis vinifera]
 gi|209954195|emb|CAQ77660.1| NADH dehydrogenase subunit 6 [Vitis vinifera]
 gi|239764731|gb|ACS15202.1| NADH dehydrogenase subunit 6 [Vitis vinifera]
          Length = 223

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 11/195 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++   + S  A++S  +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++G
Sbjct: 18  TMILSVSSSPALVSGLMVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIG 77

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE--- 120
           A+ V FLF++MM  I I        R    S  IG IL  E+     N  +     +   
Sbjct: 78  AIAVSFLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKT 137

Query: 121 -------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                   +  V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KR
Sbjct: 138 TSLRYTVYAEKVRSWTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKR 197

Query: 174 QDISKQLESNPDNSI 188
           QD+ ++   +   +I
Sbjct: 198 QDVFRRNAIDSRRTI 212


>gi|170742520|ref|YP_001771175.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium sp. 4-46]
 gi|168196794|gb|ACA18741.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methylobacterium sp. 4-46]
          Length = 206

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/204 (41%), Positives = 127/204 (62%), Gaps = 5/204 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   + FFYLF+ + + S  +V+  RNP+ SV  LI AFVNAAGLF+L+GAEF+AMI +V
Sbjct: 1   MTAAAAFFYLFAAITVASGLVVIAARNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVV 60

Query: 61  VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV----F 115
           VYVGAV V FLF++MMLD+D  E+ +  +    +G+    +   EL++   ++ +     
Sbjct: 61  VYVGAVAVLFLFVVMMLDVDFAELRQGFQDYLPVGALIGAVFLIELLLVVGSWAIDPGLV 120

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            A   ++    +  N + +G VLYT Y +  +I+G ILL++MIGAIVL LR R  +KRQD
Sbjct: 121 HAPLAVAPGGEQITNTQALGLVLYTNYFFFFQIAGLILLVAMIGAIVLTLRDRPGVKRQD 180

Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199
           I+ Q       ++ + KV + +G+
Sbjct: 181 IAVQNARTQALAVELRKVPTRQGV 204


>gi|295311651|ref|YP_003587236.1| NADH dehydrogenase subunit 6 [Citrullus lanatus]
 gi|259156779|gb|ACV96641.1| NADH dehydrogenase subunit 6 [Citrullus lanatus]
          Length = 205

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|238023175|ref|ZP_04603601.1| hypothetical protein GCWU000324_03101 [Kingella oralis ATCC 51147]
 gi|237865558|gb|EEP66698.1| hypothetical protein GCWU000324_03101 [Kingella oralis ATCC 51147]
          Length = 217

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 3/199 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY  + + + S+   VT +NP+++   L+  F  +A  +LL+ AEF+ +  +V
Sbjct: 1   MSFPLILFYTLAAIILFSALKTVTAKNPVHAALWLVLTFCMSAITWLLMQAEFLGITLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G+L A L++          +A 
Sbjct: 61  VYVGAVMVMFLFVVMMLNIDIEAMRQGFWRHAPAALTVGVLMAALLIMIFVAPDTNLAAF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    +NV ++G  +YT Y  P E++  +L+L M+ AI L+ R     K  D + 
Sbjct: 121 GAMKDIPADYSNVRDLGTQIYTTYLLPFELASVLLVLGMVAAIALVHRKSTRTKYMDPAL 180

Query: 179 QLESNP-DNSIVMVKVKSG 196
           Q+  NP +  + +V + + 
Sbjct: 181 QVRVNPNEGRMRLVSMPAE 199


>gi|325921402|ref|ZP_08183259.1| NADH dehydrogenase subunit J [Xanthomonas gardneri ATCC 19865]
 gi|325548160|gb|EGD19157.1| NADH dehydrogenase subunit J [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 9   MDWVKIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 68

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        SA   
Sbjct: 69  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPVGVIVAVAMFAQMVTLIGVKARSATPF 128

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 129 PADNAAAQAADVSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 188

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
             Q      + + MVK+   K +
Sbjct: 189 GDQSRVKAGDRLRMVKMAVEKPV 211


>gi|302543435|ref|ZP_07295777.1| NADH dehydrogenase I, J subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461053|gb|EFL24146.1| NADH dehydrogenase I, J subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 295

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 98/196 (50%), Gaps = 10/196 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   + +R  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 16  EAVQFWVLGTVAVIGALCTILMRKAVHSALSLAGTMIVLAVFYLANGAYFLGVVQIVVYT 75

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++ FLF++M++ +    +     +G      +  L   +++CA          +   
Sbjct: 76  GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGILLCAGIGNASLKTFDGLG 135

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
               G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R        S 
Sbjct: 136 QANSGGNVEGLAALVFTKYVFAFEITGALLITAAVGAMVLTHRERTERAR--------SQ 187

Query: 184 PDNSIVMVKVKSGKGI 199
            + S    +V++GK +
Sbjct: 188 REQSEE--RVRTGKHV 201


>gi|164421182|ref|YP_001648568.1| NADH dehydrogenase subunit 6 [Ptilocaulis walpersi]
 gi|158938964|gb|ABW83889.1| NADH dehydrogenase subunit 6 [Ptilocaulis walpersi]
          Length = 185

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/181 (39%), Positives = 101/181 (55%), Gaps = 1/181 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+F  IIS  +VV+  NP+YSVF LI AF+NA+ LF+LL  +F+A+I L+VYVGA+
Sbjct: 4   IFYLFAFNIIISGIMVVSALNPVYSVFWLIIAFINASILFILLDVDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLV 125
            + FLF+IMML++                F IG++             FS         +
Sbjct: 64  AILFLFVIMMLNLIDYERGKDMSNYLPAGFVIGVIFFITCRIILLSNQFSTFYVNKFDFI 123

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
              +N+   G+VLYT Y Y   I+  ILL++MIGAIVL    +++ K QDI  Q+     
Sbjct: 124 ENFSNITGFGRVLYTDYYYLFLIASLILLIAMIGAIVLTHEIKKEKKNQDIFIQISRKFW 183

Query: 186 N 186
           +
Sbjct: 184 D 184


>gi|238062220|ref|ZP_04606929.1| NADH dehydrogenase subunit J [Micromonospora sp. ATCC 39149]
 gi|237884031|gb|EEP72859.1| NADH dehydrogenase subunit J [Micromonospora sp. ATCC 39149]
          Length = 256

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 94/197 (47%), Gaps = 2/197 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++ + +A++ +  ++  RN ++S   L+   +     ++L    F+ M+ ++VY 
Sbjct: 17  EEVTFWILAPLALLGAIGMIAARNAVHSALWLVLTMLCLGVFYVLQAGPFIGMVQIIVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GA+++ FLF++M++  D   +     RG  + +  +G+  A L+       +        
Sbjct: 77  GAIMMLFLFVLMLVGRDASDSLIETLRGQRIAAVVLGLGFAGLVGGGLYRGLGGVSAVGL 136

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                  NV+ I ++L+T+Y +  E++  +L+ + +GA+VL    RR   + D    +++
Sbjct: 137 EQANAEGNVQGIARLLFTKYVFAFELTSALLITAAVGAMVLAHIERRREDKMDQIATMKA 196

Query: 183 NPDNSIVMVKVKSGKGI 199
                      K G G+
Sbjct: 197 RFAPG-NYPGPKPGPGV 212


>gi|291004460|ref|ZP_06562433.1| NADH dehydrogenase subunit J [Saccharopolyspora erythraea NRRL
           2338]
          Length = 328

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 97/201 (48%), Gaps = 5/201 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F+    +A++ +  +V  RN ++S   L+   +    L++   A F+    ++V
Sbjct: 25  TGEAVVFWTLGPLALLGAMGMVFARNAVHSALWLVLTMLCLGVLYMAQSAPFLGFTQIIV 84

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIV--CASNFMVFSAE 118
           Y GA+++ FLF++MM+  D   +     RG  L +   G+  A L+V   A +       
Sbjct: 85  YTGAIMMLFLFVLMMVGRDSSDSVVEVLRGQRLAAALAGVGFAVLLVTGLARSLTDVPVA 144

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             L+    +G     +G++++T Y +P E++  +L+ + +GA+VL    +   KR  +S+
Sbjct: 145 APLNPWSPQGGGAGGLGRLIFTDYLFPFELTSALLITAALGAMVLAYGGKGRAKR--LSQ 202

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           +  ++       V    G G+
Sbjct: 203 RDMADARFRSARVSPLPGPGV 223


>gi|119897696|ref|YP_932909.1| NADH-ubiquinone oxidoreductase subunit J [Azoarcus sp. BH72]
 gi|119670109|emb|CAL94022.1| NADH-ubiquinone oxidoreductase, chain J probable [Azoarcus sp.
           BH72]
          Length = 200

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/198 (30%), Positives = 106/198 (53%), Gaps = 2/198 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY  + + + +   V+T RNP+++   L+ +F  A G++LLL AEF+A+  ++
Sbjct: 1   MEFKTAVFYFLAAILVFAGLRVITARNPVHAALFLVLSFFTAGGIWLLLQAEFLAITLVM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118
           VYVGAV+V FLF++MMLDI+++               IGIL      +V    +    + 
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLDRIRQGFWNYLPVGALIGILMVVEMAMVLGGRYFDLDSM 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                     +N   +G+VLYT Y YP E++  +L+++M+ A+ L LR R+  K    S 
Sbjct: 121 PAPPPAAADYSNTAELGRVLYTDYVYPFELASLVLVVAMVAAVSLTLRKRKGNKYVQPSD 180

Query: 179 QLESNPDNSIVMVKVKSG 196
           Q+    +  + +VK+ + 
Sbjct: 181 QVAVKREGRVELVKMPAE 198


>gi|257852736|gb|ACV71380.1| NADH dehydrogenase subunit 6 [Prunus caroliniana]
          Length = 178

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPIPVFRDTSGLLILLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVQS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177


>gi|159039966|ref|YP_001539219.1| NADH dehydrogenase subunit J [Salinispora arenicola CNS-205]
 gi|157918801|gb|ABW00229.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora
           arenicola CNS-205]
          Length = 256

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 93/197 (47%), Gaps = 2/197 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +A++ +  +V  RN ++S   L+   +     +++    F+ ++ ++VY 
Sbjct: 17  EAVTFWILAPLALLGAIGMVAARNAVHSALWLVLTMLCLGVFYVVQAGPFIGLVQIIVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GA+++ FLF++M++      +     RG  + +  +GI  A L+       +        
Sbjct: 77  GAIMMLFLFVLMLVGRGASDSLIETLRGQRIAALVLGIGFAGLVGTGLYRALAGGTAAGL 136

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                  NV+ + ++L+T+Y    E++  +L+ + +GA+VL    RR   R D    +++
Sbjct: 137 TAANAEGNVQGVARLLFTKYVLAFELTSALLITAAVGAMVLAHVERRREDRMDQVATMKA 196

Query: 183 NPDNSIVMVKVKSGKGI 199
                      K G G+
Sbjct: 197 RF-RPGNYPGPKPGPGV 212


>gi|295311694|ref|YP_003587371.1| NADH dehydrogenase subunit 6 [Cucurbita pepo]
 gi|259156822|gb|ACV96683.1| NADH dehydrogenase subunit 6 [Cucurbita pepo]
          Length = 205

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHESVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAEKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DLFRRNAIDFRRTI 194


>gi|288917192|ref|ZP_06411561.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp.
           EUN1f]
 gi|288351383|gb|EFC85591.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp.
           EUN1f]
          Length = 317

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 1/170 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F+L + +A+I+   +V +R+ ++S   L+      A  +LL  A F+  + ++VY 
Sbjct: 19  EAWTFWLLAPVALIAGLGMVLMRSAVHSALLLVVNLFCVAVFYLLQDAPFLGFVQIIVYT 78

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GA++V FLF++M++ +D   +     RG  + +  +G+  A L+V      +        
Sbjct: 79  GAIMVLFLFVLMLVGVDSSDSLVETLRGQRIAAVILGLGFAGLLVFPIGRAIDGGSAAGL 138

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  NV  IGK+L+++Y +  E    +L+++ IG +VL  R     K
Sbjct: 139 DAANSEGNVTAIGKLLFSEYVFVFEAISALLVVAAIGTMVLGHREHTGEK 188


>gi|318057834|ref|ZP_07976557.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces sp.
           SA3_actG]
 gi|318077144|ref|ZP_07984476.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces sp.
           SA3_actF]
          Length = 304

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 84/169 (49%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +   V +   ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 23  TGEAVQFWILGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 82

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +    +     +G      +  L    ++         ++ + 
Sbjct: 83  YTGAVMMLFLFVVMLVGVTAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQG 142

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +     G NV+ + + ++T Y +  EI+G +L+ + +GA+VL  R R +
Sbjct: 143 TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTE 191


>gi|297201631|ref|ZP_06919028.1| NADH dehydrogenase subunit J [Streptomyces sviceus ATCC 29083]
 gi|197710997|gb|EDY55031.1| NADH dehydrogenase subunit J [Streptomyces sviceus ATCC 29083]
          Length = 285

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 91/198 (45%), Gaps = 2/198 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             ++  F++   +A+I +   V +R  ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 19  TGEAFQFWVLGTVAVIGALCTVFMRKAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVV 78

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L   +++ A        +   
Sbjct: 79  YTGAIMMLFLFVVMLVGVTAADSLTETIKGQRWLALLCGLGFGILLFAGIGNASLKQFNG 138

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                 G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    +++ 
Sbjct: 139 LTQANAGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RALTQREMA 196

Query: 182 SNPDNSIVMVKVKSGKGI 199
                    V      G+
Sbjct: 197 ERRVREGKHVPPLPAPGV 214


>gi|134103321|ref|YP_001108982.1| NADH dehydrogenase subunit J [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915944|emb|CAM06057.1| NADH dehydrogenase I chain J [Saccharopolyspora erythraea NRRL
           2338]
          Length = 329

 Score =  147 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 97/201 (48%), Gaps = 5/201 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F+    +A++ +  +V  RN ++S   L+   +    L++   A F+    ++V
Sbjct: 26  TGEAVVFWTLGPLALLGAMGMVFARNAVHSALWLVLTMLCLGVLYMAQSAPFLGFTQIIV 85

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIV--CASNFMVFSAE 118
           Y GA+++ FLF++MM+  D   +     RG  L +   G+  A L+V   A +       
Sbjct: 86  YTGAIMMLFLFVLMMVGRDSSDSVVEVLRGQRLAAALAGVGFAVLLVTGLARSLTDVPVA 145

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             L+    +G     +G++++T Y +P E++  +L+ + +GA+VL    +   KR  +S+
Sbjct: 146 APLNPWSPQGGGAGGLGRLIFTDYLFPFELTSALLITAALGAMVLAYGGKGRAKR--LSQ 203

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
           +  ++       V    G G+
Sbjct: 204 RDMADARFRSARVSPLPGPGV 224


>gi|323649908|ref|YP_004237281.1| NADH dehydrogenase subunit 6 [Ricinus communis]
 gi|322394288|gb|ADW96045.1| NADH dehydrogenase subunit 6 [Ricinus communis]
          Length = 217

 Score =  147 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 13/196 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IK 172
                     V    N+E +G +LYT Y     +   ILL++MIGAIVL +       +K
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVK 180

Query: 173 RQDISKQLESNPDNSI 188
           RQD+ ++   +   +I
Sbjct: 181 RQDLFRRNAIDFRRTI 196


>gi|302521203|ref|ZP_07273545.1| NADH dehydrogenase subunit J [Streptomyces sp. SPB78]
 gi|302430098|gb|EFL01914.1| NADH dehydrogenase subunit J [Streptomyces sp. SPB78]
          Length = 304

 Score =  147 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 84/169 (49%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +   V +   ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 23  TGEAVQFWILGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 82

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +    +     +G      +  L    ++         ++ + 
Sbjct: 83  YTGAVMMLFLFVVMLVGVTAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQG 142

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +     G NV+ + + ++T Y +  EI+G +L+ + +GA+VL  R R +
Sbjct: 143 TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTE 191


>gi|164421155|ref|YP_001648557.1| NADH dehydrogenase subunit 6 [Chondrilla aff. nucula CHOND]
 gi|158668116|gb|ABW76577.1| NADH dehydrogenase subunit 6 [Chondrilla aff. nucula CHOND]
          Length = 191

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 98/184 (53%), Gaps = 7/184 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+   I S  +V++  NP++SV  LIFAF NA+ LF+LL  EF+A I L+VYVGA+
Sbjct: 4   LFYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEV--AEPRKKRGFLGSFFIGILAAELIVCASN-----FMVFSAEG 119
            + FLF+IMML++                    IGI+    I+   N     ++      
Sbjct: 64  AILFLFVIMMLNLTDFGYNINSDMSNYLPAGLIIGIVFLFEILIWHNHSEGYYLSSDCVP 123

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                V    N+E IG+VLYT + Y   ++ FIL ++MIGAIVL      +I+RQD+  Q
Sbjct: 124 IYYNCVIPSPNIEIIGRVLYTDFYYLFLLASFILXVAMIGAIVLTHEINIEIRRQDLFIQ 183

Query: 180 LESN 183
               
Sbjct: 184 TSRQ 187


>gi|164421121|ref|YP_001648416.1| NADH dehydrogenase subunit 6 [Cinachyrella kuekenthali]
 gi|158938903|gb|ABW83832.1| NADH dehydrogenase subunit 6 [Cinachyrella kuekenthali]
          Length = 179

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 66/177 (37%), Positives = 104/177 (58%), Gaps = 3/177 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+   +IS  +V++  NP++SV  L+ AF+ AAGLF+LL  +F+A+I L+VYVGA+
Sbjct: 4   LFYLFALSIVISGVMVISALNPVHSVLWLVVAFIGAAGLFILLEVDFLALILLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IMML++       R      G     +  +E+++  +     S   + +    
Sbjct: 64  AILFLFVIMMLNLTGLEGTDRSNYLPTGFIIGVVFLSEVLILQTR---ISMGVDPNWNFM 120

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           +  N+E +G+VLYT Y Y   ++ FILL++M+GAIVL    +  +KRQDI  Q    
Sbjct: 121 EAPNIEVLGRVLYTNYCYLFILASFILLVAMMGAIVLTHDTKIRVKRQDIFLQTSRK 177


>gi|260223135|emb|CBA33395.1| NADH-quinone oxidoreductase subunit J [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 260

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 96/159 (60%), Gaps = 1/159 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FY+FS + + ++F V+T RNP+++   L+  F  AA +++LL AEF+++  ++
Sbjct: 1   MNVTTGLFYVFSAVLLFAAFRVITARNPVHAALYLVLTFFQAAMIWMLLKAEFLSITLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MM+DI++E       + F  +  +G ++A E+            + 
Sbjct: 61  VYVGAVMVLFLFVVMMMDINVENLRVGFWKHFPLAAIVGVVIALEMAAVLMGGFRVVDDP 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMI 158
                  + NN + +GK+L+TQY   LE++  ILL++MI
Sbjct: 121 NAVATAAEANNAKELGKLLFTQYLVQLEVAAAILLVAMI 159


>gi|29654730|ref|NP_820422.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA
           493]
 gi|153207244|ref|ZP_01946008.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154707308|ref|YP_001423966.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii Dugway
           5J108-111]
 gi|161831359|ref|YP_001597283.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA
           331]
 gi|165918812|ref|ZP_02218898.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA
           334]
 gi|212218222|ref|YP_002305009.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuK_Q154]
 gi|29541998|gb|AAO90936.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii RSA 493]
 gi|120576732|gb|EAX33356.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154356594|gb|ABS78056.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii Dugway
           5J108-111]
 gi|161763226|gb|ABX78868.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA
           331]
 gi|165917536|gb|EDR36140.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA
           334]
 gi|212012484|gb|ACJ19864.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuK_Q154]
          Length = 201

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 116/194 (59%), Gaps = 2/194 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F++F+ + I ++ +V+  RNP+++V  L+ AF  +A L++++ AEF+A++ + VYVG
Sbjct: 6   EVTFFIFAAVLIAAAAMVIISRNPVHAVLFLVLAFFASAVLWMMMQAEFLALVLIFVYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSR 123
           AV+  FLF++MML+ID+   + +  R        + +L   ++V  S      A   L  
Sbjct: 66  AVMTLFLFVVMMLNIDLSDLQQKFVRFLPFGLIAMALLIGMMVVIVSPRHFTVATAHLPH 125

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQLES 182
           +    +NV+ +G +LY  Y YP EI+  ILL+++I AI L    R+ + K Q + +QLE+
Sbjct: 126 VASNFSNVKAMGSLLYVDYFYPFEIAAVILLVAIIAAITLAFHGRKPNTKSQRVREQLEA 185

Query: 183 NPDNSIVMVKVKSG 196
             +N + ++K+K+ 
Sbjct: 186 KKENRLRVIKMKTE 199


>gi|133900436|gb|ABO41384.1| NADH dehydrogenase subunit 6 [Drypetes roxburghii]
          Length = 178

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F   +G+ LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFCETSGVLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|145596567|ref|YP_001160864.1| NADH dehydrogenase subunit J [Salinispora tropica CNB-440]
 gi|145305904|gb|ABP56486.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora
           tropica CNB-440]
          Length = 256

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 94/197 (47%), Gaps = 2/197 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +A+I +  +V  RN ++S   L+   +     ++L    F+ ++ ++VY 
Sbjct: 17  EAVTFWILAPLALIGAIGMVAARNAVHSALMLVLTMLCLGIFYVLQAGPFIGVVQIIVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GA+++ FLF++M++      +     RG  + +  +G+  A L+       +  +     
Sbjct: 77  GAIMMLFLFVLMLVGRGASDSLIETLRGQRIAALVLGVGFAGLVGTGMYRALAGSTAVGL 136

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                  NV+ I ++L+T+Y    E++  +L+ + +GA+VL    RR   R D    +++
Sbjct: 137 TTANAEGNVQGIARLLFTKYVLAFELTSALLITAAVGAMVLAHIERRREDRMDQVATMKA 196

Query: 183 NPDNSIVMVKVKSGKGI 199
                      K G G+
Sbjct: 197 RF-RPGNYPGPKPGPGV 212


>gi|3617814|emb|CAA08932.1| NADH dehydrogenase subunit 6 [Daucus carota]
 gi|15705129|gb|AAK00521.1| NADH dehydrogenase subunit 6 [Daucus carota]
 gi|15809215|gb|AAK00513.1| NADH dehydrogenase subunit 6 [Daucus carota]
          Length = 205

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S +A++S+ +VV  +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA
Sbjct: 1   MILSVLSSLALVSALMVVRAKNPVHSVSFSIPVFRNTSGLLLLLGLDFFAMIFPVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG I   E+     N  +     + +  
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYMVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDSRRTI 194


>gi|311897899|dbj|BAJ30307.1| putative NADH-quinone oxidoreductase subunit J [Kitasatospora setae
           KM-6054]
          Length = 283

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 96/198 (48%), Gaps = 2/198 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++ + +A+  +  ++ +R  ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 4   TGEAVQFWVLAVIAVGGALGMLLMRKAVHSALCLAATMIALAVCYLAQGAVFLGVVQIVV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +   + +G   +  +  L   +++ A        +   
Sbjct: 64  YTGAIMMLFLFVVMLVGVSAADSLKEQLKGQRVAAALCGLGFGVLLVAGLANAKLRDFTG 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NV+ + ++++T+Y +  E++  +L+ + +GA+VL  R +  +K     +QL 
Sbjct: 124 LAGANAEGNVQGLARLIFTKYVWAFEVTSALLITAAVGAMVLTHREK--VKAPPTQRQLA 181

Query: 182 SNPDNSIVMVKVKSGKGI 199
           +      + V      G+
Sbjct: 182 AQRVKDNIQVPPLPAPGV 199


>gi|133900448|gb|ABO41390.1| NADH dehydrogenase subunit 6 [Erythroxylum coca]
          Length = 179

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL +LLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG++   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEIFFIIDNETIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|329935988|ref|ZP_08285788.1| NADH dehydrogenase subunit J [Streptomyces griseoaurantiacus M045]
 gi|329304466|gb|EGG48344.1| NADH dehydrogenase subunit J [Streptomyces griseoaurantiacus M045]
          Length = 284

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 90/183 (49%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +   V +R  ++S  SL    +  A  +L  GA F+ ++ +VV
Sbjct: 24  TGEAVQFWILGTVAVIGALCTVFMRRAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVV 83

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L   +++ A        + + 
Sbjct: 84  YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGVLLLAGIGNASLTQFDG 143

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NV+ +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    +++ 
Sbjct: 144 LSEANAPGNVQGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RALTQREMS 201

Query: 182 SNP 184
              
Sbjct: 202 ERR 204


>gi|323149050|ref|YP_004222818.1| NADH dehydrogenase subunit 6 [Vigna radiata]
 gi|308206756|gb|ADO19893.1| NADH dehydrogenase subunit 6 [Vigna radiata]
          Length = 205

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG IL  E+     N  +     +++  
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQINTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLIYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|282860728|ref|ZP_06269794.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           sp. ACTE]
 gi|282564464|gb|EFB70000.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           sp. ACTE]
          Length = 288

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 97/194 (50%), Gaps = 4/194 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F+L   +A+I +   V ++  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 16  EAVQFWLLGTVAVIGALSTVLMKKAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVYT 75

Query: 64  GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GA+++ FLF++M++ +     + E  K + +L +         LI       + S  G  
Sbjct: 76  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLAAGCGLGFGVLLIAGIGQASLRSYNGLG 135

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +     G NVE +  +++T+Y +  EI+G +L+ + +GA++L  R R +  R    ++L 
Sbjct: 136 AANALHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMLLTHRERTE--RAKTQRELS 193

Query: 182 SNPDNSIVMVKVKS 195
                S  +  + +
Sbjct: 194 QERVRSSHLPPLPA 207


>gi|29831389|ref|NP_826023.1| NADH dehydrogenase subunit J [Streptomyces avermitilis MA-4680]
 gi|29608504|dbj|BAC72558.1| putative NADH dehydrogenase I chain J (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 280

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 87/183 (47%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             ++  F++   +A+I +   V ++  ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 12  TGEAFQFWILGTVAVIGALCTVLMKKAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVV 71

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L    ++ A        E + 
Sbjct: 72  YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALVCGLGFGTLLFAGIGNASIKEFDG 131

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    ++L 
Sbjct: 132 LGTANANGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RAKTQRELS 189

Query: 182 SNP 184
              
Sbjct: 190 EQR 192


>gi|164421078|ref|YP_001648623.1| NADH dehydrogenase subunit 6 [Agelas schmidti]
 gi|158938993|gb|ABW83916.1| NADH dehydrogenase subunit 6 [Agelas schmidti]
          Length = 189

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/185 (37%), Positives = 100/185 (54%), Gaps = 4/185 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FY F+   I+S  +V++  NP++SVF LI AF +A+ LF+LL  EF+A++ L+VY
Sbjct: 1   MLEGLFYFFALSVILSGIMVISAFNPVHSVFWLILAFTSASALFILLEVEFIALMFLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ + FLF+IMML++                F IG++        S+    S      
Sbjct: 61  VGAIAILFLFVIMMLNLMDFEMGGDMSNFLATGFLIGVVFLINCRVVSHLGRPSFYSFSW 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR----RDIKRQDISK 178
             V K  N+E IG+VLYT Y Y   ++ FILL++M+GAIVL           +KRQ I  
Sbjct: 121 DFVGKTTNIEVIGRVLYTNYYYLFILASFILLVAMVGAIVLTHDRESIVPSSLKRQTIFA 180

Query: 179 QLESN 183
           Q+   
Sbjct: 181 QISRQ 185


>gi|296040749|gb|ADG85342.1| NADH dehydrogenase subunit 6 [Silene latifolia]
          Length = 190

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 11/190 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG++   E+     N  +     + +  
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNP 184
           D+ ++   + 
Sbjct: 181 DVFRRNAIDF 190


>gi|164421137|ref|YP_001648582.1| NADH dehydrogenase subunit 6 [Ectyoplasia ferox]
 gi|158668128|gb|ABW76588.1| NADH dehydrogenase subunit 6 [Ectyoplasia ferox]
          Length = 185

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/182 (37%), Positives = 104/182 (57%), Gaps = 1/182 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+F  IIS  +V++  NPIYSVF LI AF+NA+ LF+LL  +F+A+I L+VYVGA+
Sbjct: 4   IFYLFAFNVIISGIMVISALNPIYSVFWLIIAFINASVLFILLEVDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI-VCASNFMVFSAEGELSRLV 125
            + FLF+IMML++                F IG++      +   +  +          V
Sbjct: 64  AILFLFVIMMLNLIDYEKGRDMSNYLPAGFVIGVIFFITCRIIILSSQLSLFSLNRFDYV 123

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
              +N+  +G+VLYT Y Y   I+  ILL++MIGAI+L    +++ K QD+  Q+     
Sbjct: 124 ENFSNIIGLGRVLYTDYYYLFLIASLILLVAMIGAIILTHETKKEKKDQDMFIQISRELW 183

Query: 186 NS 187
           +S
Sbjct: 184 DS 185


>gi|133900534|gb|ABO41433.1| NADH dehydrogenase subunit 6 [Poliothyrsis sinensis]
          Length = 179

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL +LLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|295837116|ref|ZP_06824049.1| NADH dehydrogenase I, J subunit [Streptomyces sp. SPB74]
 gi|197697227|gb|EDY44160.1| NADH dehydrogenase I, J subunit [Streptomyces sp. SPB74]
          Length = 283

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 84/169 (49%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +   V +   ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 23  TGEAVQFWVLGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 82

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +    +     +G      +  L    ++         ++ + 
Sbjct: 83  YTGAVMMLFLFVVMLVGVTAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQG 142

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +     G NV+ + + ++T Y +  EI+G +L+ + +GA+VL  R R +
Sbjct: 143 TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTE 191


>gi|284992916|ref|YP_003411470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Geodermatophilus obscurus DSM 43160]
 gi|284066161|gb|ADB77099.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Geodermatophilus obscurus DSM 43160]
          Length = 273

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 91/186 (48%), Gaps = 4/186 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+  +  +V  RN ++S   LI   +     +++  A F+  + ++V
Sbjct: 8   TGEAVVFWVLGPIALAGALGMVMSRNAVHSALWLINTMLALGVFYVVQEAPFLGAVQIIV 67

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELI--VCASNFMVFSAE 118
           Y GA+++ FLF++M++  D   +     RG  + +  +G   A ++    A         
Sbjct: 68  YTGAIMILFLFVLMLVGRDSSDSVVETLRGQRVAALLLGAGFAAVVGAGVARATQDLPVA 127

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  +    + +N+E I  +LY++Y    E++G +L+ + +GA+VL    R   +R+   K
Sbjct: 128 GLGAVQGAETSNIEAIAGLLYSRYLLAFEVTGALLITAAVGALVLTHVEREAEERR-TQK 186

Query: 179 QLESNP 184
           +L    
Sbjct: 187 ELSRAR 192


>gi|9280596|gb|AAF86486.1|AF279439_1 NADH dehydrogenase subunit 6 [Lupinus luteus]
 gi|9280600|gb|AAF86488.1|AF279441_1 NADH dehydrogenase subunit 6 [Lupinus mutabilis]
          Length = 205

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE---- 120
           + V FLF++MM  I I        R    S  IG IL  E+     N  +     +    
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTT 120

Query: 121 ------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                  +  V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|328884321|emb|CCA57560.1| NADH-ubiquinone oxidoreductase chain J [Streptomyces venezuelae
           ATCC 10712]
          Length = 275

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 91/198 (45%), Gaps = 4/198 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++   +A+I +   + +R  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 14  EAFQFWVLGTVAVIGALCTILMRKAVHSALCLAGTMIILAVFYLANGAYFLGIVQIVVYT 73

Query: 64  GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GA+++ FLF++M++ +     + E  K + +            L     N  +    G  
Sbjct: 74  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWWAVACGLGFGILLAAGIGNASLKEFTGLG 133

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           +     G NVE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    ++L 
Sbjct: 134 AANSAHGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RAATQRELS 191

Query: 182 SNPDNSIVMVKVKSGKGI 199
                    V      G+
Sbjct: 192 EQRVREGKHVPPLPAPGV 209


>gi|239980143|ref|ZP_04702667.1| NADH dehydrogenase subunit J [Streptomyces albus J1074]
 gi|291451998|ref|ZP_06591388.1| NADH dehydrogenase subunit J [Streptomyces albus J1074]
 gi|291354947|gb|EFE81849.1| NADH dehydrogenase subunit J [Streptomyces albus J1074]
          Length = 271

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 94/198 (47%), Gaps = 2/198 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A++ +   V ++  ++S   L    +  A  +L  GA F+ ++ +VV
Sbjct: 11  TGEAVQFWILGTVAVLGALSTVLMKKAVHSALCLAATMIVLAVFYLANGAYFLGIVQIVV 70

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L   +++ A    V  ++   
Sbjct: 71  YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALAALGFGILLIAGIGQVGISQFNG 130

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                 G NV+ +  +++T+Y +  EI+G +L+ + +GA++L  R R +  R    ++L 
Sbjct: 131 LAAANSGGNVQGLAALIFTKYVFAFEITGALLITATVGAMLLTHRERTE--RASTQRELA 188

Query: 182 SNPDNSIVMVKVKSGKGI 199
                    V      G+
Sbjct: 189 EKRVRENTHVPPLPAPGV 206


>gi|13449312|ref|NP_085495.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
 gi|48474289|sp|P60498|NU6M_BRACM RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|12768|emb|CAA48326.1| NADH dehydrogenase subunit 6 [Brassica rapa]
 gi|6851015|emb|CAA69769.3| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
 gi|80978898|gb|ABB54698.1| NADH dehydrogenase subunit 6 [Brassica oleracea var. botrytis]
          Length = 205

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG++   E+     N  +     + +  
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|212212191|ref|YP_002303127.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuG_Q212]
 gi|212010601|gb|ACJ17982.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuG_Q212]
          Length = 201

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 116/194 (59%), Gaps = 2/194 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F++F+ + I ++ +V+  RNP+++V  L+ AF  +A L++++ AEF+A++ + VYVG
Sbjct: 6   EVTFFIFAAVLIAAAAMVIISRNPVHAVLFLVLAFFASAVLWMMMQAEFLALVLIFVYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSR 123
           AV+  FLF++MML+ID+   + +  R        + +L   ++V  S      A   L  
Sbjct: 66  AVMTLFLFVVMMLNIDLSDLQQKFVRFLPFGLIAMALLIGMMVVIVSPRHFTVATAHLPH 125

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQLES 182
           +    +NV+ +G +LY  Y YP EI+  ILL+++I AI L    R+ + K Q + +QLE+
Sbjct: 126 VASNFSNVKAMGSLLYVDYFYPFEIAAVILLVAIIAAITLAFHGRKPNTKFQRVREQLEA 185

Query: 183 NPDNSIVMVKVKSG 196
             +N + ++K+K+ 
Sbjct: 186 KKENRLRVIKMKTE 199


>gi|164421042|ref|YP_001648672.1| NADH dehydrogenase subunit 6 [Plakortis angulospiculatus]
 gi|158939032|gb|ABW83952.1| NADH dehydrogenase subunit 6 [Plakortis angulospiculatus]
          Length = 197

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+
Sbjct: 4   LFYAITLAILVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE------- 118
            + FLF+IMML++ D+E          +GS     L  E+ +     +V+S E       
Sbjct: 64  AILFLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNEDTDYTNL 123

Query: 119 ------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  ++S  + K +N+E +G++LYT Y Y   ++ FILL++MIGAIVL      ++K
Sbjct: 124 TDLLDSWDISIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q   N
Sbjct: 184 RQDLFIQTSRN 194


>gi|289665182|ref|ZP_06486763.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 227

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 9   MDWVTIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 68

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        SA   
Sbjct: 69  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRSATPF 128

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 129 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 188

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 189 GEQSRVKAGDRLRMVKMAVEKPV 211


>gi|164421028|ref|YP_001648479.1| NADH dehydrogenase subunit 6 [Aplysina fulva]
 gi|158668077|gb|ABW76540.1| NADH dehydrogenase subunit 6 [Aplysina fulva]
          Length = 190

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 7/184 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F+LF    + S  +V++  NP++SV  LI AF NA+ LF+LL  EF+A+I L++YVGA+
Sbjct: 4   LFFLFGVNVLFSGIMVISALNPVHSVLWLIVAFTNASALFILLNVEFIALIFLIIYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-------FMVFSAEG 119
            + FLF+IMML++             L    IGI+    I    N         ++SA  
Sbjct: 64  AILFLFVIMMLNLADLGGSEDMSNYLLAGLIIGIVFLFEIWIWQNHQETPPMAFIYSAGI 123

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                     N+E IG++LYT+  Y   ++ F+LL++MIGAIVL      +IKRQDI  Q
Sbjct: 124 NYWDYTAAYTNIEIIGRILYTELYYLFIVASFVLLVAMIGAIVLTHDMGTEIKRQDIFIQ 183

Query: 180 LESN 183
               
Sbjct: 184 TSRQ 187


>gi|257852688|gb|ACV71356.1| NADH dehydrogenase subunit 6 [Abatia parviflora]
          Length = 178

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL +LLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  +  
Sbjct: 61  IKIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKIRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|23268295|gb|AAN11292.1| NADH dehydrogenase subunit 6 [Lupinus albus]
          Length = 205

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE---- 120
           + V FLF++M+  I I        R    S  IG IL  E+     N  +     +    
Sbjct: 61  IAVSFLFVVMLFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTT 120

Query: 121 ------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                  +  V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|317097125|ref|YP_004123257.1| NADH dehydrogenase subunit 6 [Plakina jani]
 gi|308912726|gb|ADO51484.1| NADH dehydrogenase subunit 6 [Plakina jani]
          Length = 197

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 14/190 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNMDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-------- 118
           + FLF+IMML++ D+E A        +GS     L  E+ +     +V+S          
Sbjct: 65  ILFLFVIMMLNLTDLEGAGDMSNYIPIGSVMGVFLLFEIFIMGREAIVYSNRDTDYENLM 124

Query: 119 -----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 ++S  + K +N+E +G++LYT Y Y   ++ FILL++MIGAIVL      ++KR
Sbjct: 125 DVLDFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184

Query: 174 QDISKQLESN 183
           QD+  Q   N
Sbjct: 185 QDLFIQTSRN 194


>gi|133900462|gb|ABO41397.1| NADH dehydrogenase subunit 6 [Hasseltia floribunda]
 gi|133900538|gb|ABO41435.1| NADH dehydrogenase subunit 6 [Prockia crucis]
 gi|133900548|gb|ABO41440.1| NADH dehydrogenase subunit 6 [Salix reticulata]
          Length = 179

 Score =  144 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL +LLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG++   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|33239634|ref|NP_874576.1| NADH dehydrogenase subunit J [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237159|gb|AAP99228.1| NAD(P)H-quinone oxidoreductase chain 6 [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 200

 Score =  144 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F + + + I  S  VV + N +YS F L   F++ AGL+LLL A FVA   ++V
Sbjct: 6   STEQICFLILASVIISGSLGVVLIENIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   E+      +  +  FF G + A L+       + +     
Sbjct: 66  YVGAVNVLILFAIMLVNKREELKPIAGLQ--IRRFFSGCVCAGLLALLFRVNLTTKWATP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                     E IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPQAIGEEATERIGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 168


>gi|300782460|ref|YP_003762751.1| NADH dehydrogenase I subunit J [Amycolatopsis mediterranei U32]
 gi|299791974|gb|ADJ42349.1| NADH dehydrogenase I subunit J [Amycolatopsis mediterranei U32]
          Length = 291

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   ++++ +  ++  RN ++S   L+   ++   L+++  A F+    ++V
Sbjct: 18  TGEAIAFWVLGPVSLLGALGMIFSRNAVHSALWLVLTMLSLGALYMIQSAPFLGFTQIIV 77

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCAS--NFMVFSAE 118
           Y GA+++ FLF++M++  +   +     RG  L +  +GI  A L+           +  
Sbjct: 78  YTGAIMMLFLFVLMLVGRESSDSVVEVLRGQRLAATVLGIGLAALLATGIYRALENVTPA 137

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRRDIK 172
             L      G   + +G++++T Y +P E++  +L+ + IGA+VL    RH +  K
Sbjct: 138 IPLDSATPAGGGPKGLGRLIFTDYLFPFELTSALLITAAIGAMVLAFTDRHGKGGK 193


>gi|317097475|ref|YP_004123691.1| NADH dehydrogenase subunit 6 [Plakina sp. DVL-2010]
 gi|308912635|gb|ADO51399.1| NADH dehydrogenase subunit 6 [Plakina sp. DVL-2010]
          Length = 197

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+
Sbjct: 4   LFYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--------- 116
            + FLF+IMML++ D+E A        +GS     L  E+ +     +V+S         
Sbjct: 64  AILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEIFIIGREAIVYSNRDSDYENL 123

Query: 117 ----AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  ++S  + K +N+E +G++LYT Y Y   ++ FILL++MIGAIVL      ++K
Sbjct: 124 TDVLGFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q   N
Sbjct: 184 RQDLFIQTSRN 194


>gi|63025141|ref|YP_232806.1| NADH dehydrogenase subunit 6 [Tethya actinia]
 gi|37961475|gb|AAP59065.1| NADH dehydrogenase subunit 6 [Tethya actinia]
          Length = 187

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 71/182 (39%), Positives = 110/182 (60%), Gaps = 5/182 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYLF+F  IIS  +V++  NP++S+  LI AF +AA LF+ L  +F+A I L+VYVGA+
Sbjct: 4   LFYLFAFSVIISGIMVISALNPVHSILWLIVAFSSAAVLFIFLEVDFIAFIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS--- 122
            + FLF+IMML++ D+  +           F IG++    ++  S+  +    G ++   
Sbjct: 64  AILFLFVIMMLNLTDLADSFQDMSNYVPIGFLIGVIIFFKVLIFSSGKLSGLSGVINDFR 123

Query: 123 -RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
              + K +N+E +G+VLYT Y Y   ++ F+LL++MIGAIVL    R +IKRQDI  Q+ 
Sbjct: 124 WDFLEKVSNIEVLGRVLYTDYYYYFLLASFVLLVAMIGAIVLTHDLRVEIKRQDIFIQIS 183

Query: 182 SN 183
             
Sbjct: 184 RQ 185


>gi|133900454|gb|ABO41393.1| NADH dehydrogenase subunit 6 [Flacourtia jangomas]
 gi|133900536|gb|ABO41434.1| NADH dehydrogenase subunit 6 [Populus maximowiczii]
 gi|257852690|gb|ACV71357.1| NADH dehydrogenase subunit 6 [Idesia polycarpa]
          Length = 178

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL +LLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|58582849|ref|YP_201865.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427443|gb|AAW76480.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
          Length = 227

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +L FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 9   MDWVTLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 68

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        SA   
Sbjct: 69  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIMAVAMLAQMVTLIGVKARSATPF 128

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 129 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 188

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 189 GEQSRVKAGDRLRMVKMAVEKPV 211


>gi|294788066|ref|ZP_06753310.1| NADH dehydrogenase (ubiquinone), J subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294484359|gb|EFG32042.1| NADH dehydrogenase (ubiquinone), J subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 215

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 110/197 (55%), Gaps = 3/197 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FYLF+ + +  +   V  +NP+++   L+  F  +A ++LL+ AEF+ +  +V
Sbjct: 1   MTFQLILFYLFAAIILYGALQTVLAKNPVHATLHLVLTFCVSAMMWLLMQAEFLGITLVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAE 118
           VYVGAV+V FLF++MML+IDIE       R    +  +G+L   A + +  +     +  
Sbjct: 61  VYVGAVMVLFLFVVMMLNIDIEEMRKGFWRHAPAAMVVGVLMAVALIAILVAPDTALNQF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G +  +    +NV ++G  LYT Y +  E++  +L+L M+ AI L+ R   + KR D + 
Sbjct: 121 GLMKDIPADYSNVRDLGIQLYTTYMWQFELAAVLLVLGMVAAIALVHRKSTNPKRIDPAD 180

Query: 179 QLESNPDN-SIVMVKVK 194
           Q++ N     + +VK++
Sbjct: 181 QVKVNAAEGRMRLVKME 197


>gi|186920131|ref|YP_001874785.1| NADH dehydrogenase subunit 6 [Hemiselmis andersenii]
 gi|186461077|gb|ACC78239.1| NADH dehydrogenase subunit 6 [Hemiselmis andersenii]
          Length = 208

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 102/203 (50%), Gaps = 17/203 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+++ F  FS + +     V+T +NPI+SV  L+  F N +GL +LLG EF+A + L+VY
Sbjct: 1   MEAILFLFFSSLTLTCGLFVITSKNPIHSVLFLVLVFFNVSGLLILLGVEFLAFLFLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA------------- 109
           VGA+ V FLFI+MML I I   +    R       +G      I+               
Sbjct: 61  VGAIAVLFLFIVMMLSIKIPEYKLIIYRYIPIGVILGTGFLCEILIVFESELSSLIVSPF 120

Query: 110 ----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                N    ++       V    N+E    VLYT YAY   I+G ILL+SMIGAI L L
Sbjct: 121 GKLTFNTFYLNSITLWDVNVVPITNIEVFAGVLYTHYAYFFIIAGIILLVSMIGAITLTL 180

Query: 166 RHRRDIKRQDISKQLESNPDNSI 188
             R DIKRQ I KQ++     +I
Sbjct: 181 HRRIDIKRQKIYKQVQKEFAKTI 203


>gi|9280598|gb|AAF86487.1|AF279440_1 NADH dehydrogenase subunit 6 [Lupinus angustifolius]
          Length = 205

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVAHAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE---- 120
           + V FLF++MM  I I        R    S  IG IL  E+     N  +     +    
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTT 120

Query: 121 ------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                  +  V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVGSLILLVAMIGAIVLTMHRTTQVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|77166014|ref|YP_344539.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Nitrosococcus oceani ATCC 19707]
 gi|254436307|ref|ZP_05049813.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Nitrosococcus oceani AFC27]
 gi|76884328|gb|ABA59009.1| NADH dehydrogenase subunit J [Nitrosococcus oceani ATCC 19707]
 gi|207087997|gb|EDZ65270.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Nitrosococcus oceani AFC27]
          Length = 201

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 116/197 (58%), Gaps = 3/197 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+F+ + + ++ +VVTVRNP+ +   L+ AF  +A ++LLL AEF+A++ ++VY
Sbjct: 1   MEKTLFYIFAAILLFAATMVVTVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGE 120
           +GAV+V FLF++MMLD+++   +    R     F + +L A   +IV  S          
Sbjct: 61  IGAVMVLFLFVVMMLDMNLAPLQEGFARYLPVGFLVAVLIAIEMIIVLGSKNFGLDQFTA 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            +      +N + +G +LYT Y YP E++  ILL++++ A + +   RR  K QD ++Q+
Sbjct: 121 PASRGADYSNTKELGNLLYTVYVYPFELASVILLVAIV-AAIALALRRRPSKAQDPAQQV 179

Query: 181 ESNPDNSIVMVKVKSGK 197
              P + + +VK+ + K
Sbjct: 180 RVRPQDRVRLVKMAAEK 196


>gi|11497476|ref|NP_042266.1| NADH dehydrogenase (ubiquinone), subunit 6 [Prototheca wickerhamii]
 gi|3122569|sp|Q37626|NU6M_PROWI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|467867|gb|AAD12654.1| NADH dehydrogenase (ubiquinone), subunit 6 [Prototheca wickerhamii]
          Length = 207

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 109/205 (53%), Gaps = 18/205 (8%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+FS + +IS  LV+  RNP++SV  L+  F NAAGL +LLG +F A+I LVVYVG
Sbjct: 2   DFLFYIFSSLTLISGSLVIQARNPVHSVLFLVLVFFNAAGLLVLLGLDFFALIFLVVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-------------N 111
           A+ V FLF++MML+I I     ++ R       +G+L    I                 N
Sbjct: 62  AIAVLFLFVVMMLNIRITEISEKRLRYLPVGGVLGVLFLFEICILIDNDCIPLLSYDIEN 121

Query: 112 FMVFSAEGELSRLVF-----KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             + +   +LS + +       + ++ +G +LYT Y Y   ++  ILL++MIGAIVL ++
Sbjct: 122 TALLANYNQLSFIDWRMYLSTSHTIDALGSLLYTYYFYFFLVASLILLVAMIGAIVLTMQ 181

Query: 167 HRRDIKRQDISKQLESNPDNSIVMV 191
               IKRQ +  Q   +   +I  V
Sbjct: 182 KGIRIKRQQVFLQNTRDFAKTIRKV 206


>gi|166712605|ref|ZP_02243812.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 219

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +L FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVTLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        SA   
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      N + MVK+   K +
Sbjct: 181 GEQSRVKAGNRLRMVKMAVEKPV 203


>gi|317097391|ref|YP_004123598.1| NADH dehydrogenase subunit 6 [Plakina crypta]
 gi|308912604|gb|ADO51370.1| NADH dehydrogenase subunit 6 [Plakina crypta]
          Length = 197

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+
Sbjct: 4   LFYAITLAVLVSGIMVISALNPIHSVFWLIAGFLGASALFILLNIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE------- 118
            + FLF+IMML++ D+E A        +GS     L  E  +     +V+S         
Sbjct: 64  AILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEXFIIGREVVVYSNRDSDYENL 123

Query: 119 ------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  ++S  + K +N+E +G++LYT Y Y   ++ FILL++MIGAIVL      ++K
Sbjct: 124 MDVLYFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q+  N
Sbjct: 184 RQDLFIQMSRN 194


>gi|9653241|ref|NP_062487.1| NADH dehydrogenase subunit 6 [Chondrus crispus]
 gi|1352589|sp|P48924|NU6M_CHOCR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1334488|emb|CAA87610.1| NADH dehydrogenase (ubiquinone), subunit 6 [Chondrus crispus]
          Length = 204

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    FYLFS  A+ISS +V+ + N ++SV  LI  F N AGL LLLG EF + + ++
Sbjct: 1   MNIDIFLFYLFSIFALISSLMVIGLTNAVHSVLFLILVFCNVAGLLLLLGPEFFSFMLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGA+ V FLF++MML+I ++         +       ++       +   +       
Sbjct: 61  VYVGAIAVLFLFVVMMLNIKLKSTNISFSSLWPIGILTFVILLSQFFSSFYELDLVKFQG 120

Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                   +       N++ IGKVLYT +     I G ILL++MIG IVL +  R D+K+
Sbjct: 121 KELFFISWANENSNLTNIKVIGKVLYTHFNLLFLICGLILLVAMIGVIVLTMHQRVDVKK 180

Query: 174 QDISKQLESNPDNSIVMV 191
           Q I+ QL     N I  +
Sbjct: 181 QQIALQLARTAPNVIKFI 198


>gi|296040751|gb|ADG85343.1| NADH dehydrogenase subunit 6 [Silene noctiflora]
          Length = 195

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S +A++S  +VV  +NP++SV   I  F N AGL L LG +F AMI LVVY+GA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCNTAGLLLFLGLDFFAMIFLVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM  I I        R    S  IG++   E+     N  +     + + +
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNETIPLLPTQRTTI 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     V    N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTGYTGKVRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDFRRTI 194


>gi|302035983|ref|YP_003796305.1| NADH-quinone oxidoreductase membrane subunit J [Candidatus
           Nitrospira defluvii]
 gi|300604047|emb|CBK40379.1| NADH-quinone oxidoreductase, membrane subunit J [Candidatus
           Nitrospira defluvii]
          Length = 206

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  +FF+ F+ +   +S LVV +RNP+YS  SL+  F + AGL++ L AEF+A + +VVY
Sbjct: 38  MDHIFFFYFAAVIAATSLLVVALRNPVYSALSLLIMFFHVAGLYVTLHAEFLAAVQIVVY 97

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V +LF++M+L I  E  E    +  +      +L  E+I+        +A    +
Sbjct: 98  AGAILVLYLFVVMLLSIKSE--ERYHSQLPVAGLLGVMLCTEVILLFIQSRTGAAAPAAA 155

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +    N E IG+ LY+ Y +P E++  ILL++MIGAI+L  +
Sbjct: 156 DPIAGPGNTEMIGEALYSTYLFPFEVASLILLVAMIGAIILAKK 199


>gi|296268282|ref|YP_003650914.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Thermobispora bispora DSM 43833]
 gi|296091069|gb|ADG87021.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobispora
           bispora DSM 43833]
          Length = 296

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 97/182 (53%), Gaps = 4/182 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +S+ F++ + ++++++F +V  R  +YS   L    ++ A L+ +  A F+A + ++VY 
Sbjct: 3   ESITFWVLAVVSVLAAFGLVLSRKAVYSALMLGVVMLSLAVLYAVQDAPFLAAVQIIVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GAV++ FLF++M++ +D   +     +G    +   G+    L+  A   +  SA   L 
Sbjct: 63  GAVMMLFLFVLMLIGVDTSDSLVETIKGQRFWAIVAGLGFVALLGLAVGNVAVSAATGLG 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
               K +NV ++ ++++T++ +  E++  +L+ + +GA+VL  R RR  K     K L  
Sbjct: 123 EE-GKASNVLSLAELIFTRHVFAFEVTSALLITAALGAMVLAHRERRTPKP--TQKDLSR 179

Query: 183 NP 184
             
Sbjct: 180 RR 181


>gi|84624715|ref|YP_452087.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577687|ref|YP_001914616.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84368655|dbj|BAE69813.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|188522139|gb|ACD60084.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 220

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +L FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 2   MDWVTLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        SA   
Sbjct: 62  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIMAVAMLAQMVTLIGVKARSATPF 121

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204


>gi|329909996|ref|ZP_08275181.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546333|gb|EGF31352.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 221

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 118/196 (60%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++  FY FS + ++++  V+T RNP++S   L+ +F +AA ++LLL AEF+A++ ++
Sbjct: 1   MEFKTALFYAFSAILVMAALKVITDRNPVHSALFLVLSFFSAAAIWLLLQAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+++            + FIG+L    +        ++ + +
Sbjct: 61  VYVGAVMVLFLFVVMMLDINVDKMREGFWGYLPFAAFIGVLIVLEMSAVLLQAFWAPDAQ 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           +          + +GK++YT+Y +  EI+  ILLL+++ A+ L LR R+D K  D ++ +
Sbjct: 121 VPSAASTIGTTKELGKLIYTEYVFAFEIAAAILLLAIVAAVALTLRKRKDSKYFDPAEAV 180

Query: 181 ESNPDNSIVMVKVKSG 196
           +    + + +VK+KS 
Sbjct: 181 KVKASDRVRIVKMKSE 196


>gi|331699303|ref|YP_004335542.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953992|gb|AEA27689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Pseudonocardia dioxanivorans CB1190]
          Length = 274

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 97/203 (47%), Gaps = 4/203 (1%)

Query: 1   MVM-QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           M + +S+ F++   +A+  +  +V  RN ++S   L+   ++   L+++  A F+  + +
Sbjct: 16  MTLGESIAFWILGIVALGGALGMVFARNAVHSALFLVMTMLSLGILYIVQQAPFLGFVQI 75

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG---FLGSFFIGILAAELIVCASNFMVFS 116
           +VY GAV++ FLF++M++  D   +     RG         +G+    +   A +    +
Sbjct: 76  IVYTGAVMMLFLFVLMLVGRDSSDSVVEVLRGQRIAGLLLGLGLALLLVAAVARSLTSVT 135

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             G  + L    NN+  +G++++T Y  P E++  +L+ + +GA+VL     +  +++  
Sbjct: 136 PAGLGANLQGSNNNLPGLGRLIFTDYLLPFELTSALLITAALGAMVLAHAQTKSHEKRGQ 195

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
              + +        V    G G+
Sbjct: 196 RATVLARLRGEHARVSPLPGPGV 218


>gi|115494865|ref|YP_778635.1| NADH dehydrogenase subunit 6 [Chrysopathes formosa]
 gi|82792226|gb|ABB90975.1| NADH dehydrogenase subunit 6 [Chrysopathes formosa]
          Length = 210

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 24/208 (11%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY  +F AI S  +V++  NP++S+F L+ AF ++A LF+LLG +F+A+I L++Y
Sbjct: 1   MILICFYTLAFGAIASGIMVISALNPVHSIFWLVVAFTSSAALFILLGVDFIALIFLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIV--CASNFMVFSAE 118
           VGA+ + FLF+IM+L++       R   +        IG+    L+    AS++++ S  
Sbjct: 61  VGAIAILFLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLAIGTLLFSEVASSWLIMSGP 120

Query: 119 G----------------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
                                 + K +N+E IG++LYT Y Y   ++ FILL+++IGAIV
Sbjct: 121 YVHRGSFRAEIGSSWDLANPWFLIKYHNIEAIGRILYTDYYYIFILASFILLVALIGAIV 180

Query: 163 LMLRHRRDI----KRQDISKQLESNPDN 186
           L      ++    K+QDI  Q     + 
Sbjct: 181 LTQEIGSEVGPTAKKQDIFFQTSRAQEE 208


>gi|294624669|ref|ZP_06703339.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666768|ref|ZP_06732002.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292601025|gb|EFF45092.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603429|gb|EFF46846.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 219

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   S+ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVSIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        SA   
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 181 GEQSRVKAGDRLRMVKMAVEKPV 203


>gi|21243423|ref|NP_643005.1| NADH dehydrogenase subunit J [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108975|gb|AAM37541.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 220

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 2   MDWVTIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        SA   
Sbjct: 62  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 121

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204


>gi|78048400|ref|YP_364575.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036830|emb|CAJ24523.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 219

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +L FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 1   MDWVTLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        SA   
Sbjct: 61  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 181 GEQSRVKAGDRLRMVKMAVEKPV 203


>gi|109156563|ref|YP_654373.1| NADH dehydrogenase subunit 6 [Nematostella sp. JVK-2006]
 gi|108744126|gb|ABG02347.1| NADH dehydrogenase subunit 6 [Nematostella sp. JVK-2006]
          Length = 199

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 112/196 (57%), Gaps = 19/196 (9%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY  SF  + S  +V++  NP++SVF L+ AF ++A LF+LLG +F+A++ +++YVGA
Sbjct: 1   MCFYALSFGTVASGIMVISALNPVHSVFWLVVAFTSSAALFVLLGVDFIALMFVIIYVGA 60

Query: 66  VIVFFLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           + + FLF+IMML++           + ++         +G+ F   +A+  ++    ++ 
Sbjct: 61  IAILFLFVIMMLNLADFSPAFRLGGEADMTNYVPIGLAIGTLFFEAIASSWLIMGGPYVH 120

Query: 115 FSAEGELS----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            S+ G  +      + K +N+E IG++LYT   Y   ++ FILL++MIGAIVL      +
Sbjct: 121 KSSLGTWNLANPWFLTKYHNIEAIGQILYTDCYYLFILASFILLVAMIGAIVLTQEIGSE 180

Query: 171 I----KRQDISKQLES 182
           +    K+Q+I  Q+  
Sbjct: 181 VGPAAKKQNIFSQISR 196


>gi|332285008|ref|YP_004416919.1| NADH-ubiquinone oxidoreductase, chain J [Pusillimonas sp. T7-7]
 gi|330428961|gb|AEC20295.1| NADH-ubiquinone oxidoreductase, chain J [Pusillimonas sp. T7-7]
          Length = 212

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/195 (31%), Positives = 111/195 (56%), Gaps = 1/195 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++ FY+ + + ++++F V+T  +P+  V  LI  F  A+ +++L GAEF++++ ++
Sbjct: 1   MIFSTILFYVLALVLVVAAFRVITANSPVTGVLHLILTFFTASMIWMLQGAEFLSLLLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLD+ ++      K        IG++    +          A G 
Sbjct: 61  VYVGAVMVLFLFVVMMLDVRMDALRAGMKTYLPMGLIIGLIMVLEMAFVLAKSWLGA-GP 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            + +    +N   +G  +YT Y + ++I G ILL+ MI AI L LR R D+KR + S+Q+
Sbjct: 120 AAVIADDVDNTHALGVAMYTDYVFAVQIGGVILLVGMIAAIALTLRKRADVKRTNPSEQV 179

Query: 181 ESNPDNSIVMVKVKS 195
           +    + + MV + S
Sbjct: 180 KVKAQDRLRMVSIPS 194


>gi|72383361|ref|YP_292716.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL2A]
 gi|72003211|gb|AAZ59013.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL2A]
          Length = 200

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F + S + +  S  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   STELICFLILSAVIVSGSLAVVLLENIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQILV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++   +  R        G +   L++      + +     
Sbjct: 66  YVGAVNVLILFAIMLVNNKEKLKPIKGLRT--RKLISGGVCGGLLILLLRVSITTKWNLP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                     E IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPTSIGEEATERIGEHLFTDYLLPFELASILLLMAMIGAIVLARR 168


>gi|317134294|ref|YP_004123149.1| NADH dehydrogenase subunit 6 [Plakina trilopha]
 gi|308912666|gb|ADO51428.1| NADH dehydrogenase subunit 6 [Plakina trilopha]
          Length = 197

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 14/192 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+
Sbjct: 4   LFYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS--------------NF 112
            + FLF+IMML++                  +G+     I                  N 
Sbjct: 64  AILFLFVIMMLNLTDLGGAGDMSNYIPIGSVMGVFLLFEIFIMGREAIVYSNRDTDYENL 123

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           M      ++S  + K +N+E +G++LYT Y Y   ++ FILL++MIGAIVL      ++K
Sbjct: 124 MDVLDFWDVSIEIIKFSNIEALGRILYTNYFYLFILASFILLVAMIGAIVLTHELGIELK 183

Query: 173 RQDISKQLESNP 184
           RQD+  Q   N 
Sbjct: 184 RQDLFIQTSRNF 195


>gi|133900466|gb|ABO41399.1| NADH dehydrogenase subunit 6 [Homalanthus populneus]
          Length = 179

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|256396783|ref|YP_003118347.1| NADH dehydrogenase subunit J [Catenulispora acidiphila DSM 44928]
 gi|256363009|gb|ACU76506.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora
           acidiphila DSM 44928]
          Length = 287

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 91/183 (49%), Gaps = 4/183 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  FY+   +A++ +   V  +  ++S  SL    +  A  +L  GA F+ ++ +VVY 
Sbjct: 25  EAFQFYVLGAVALLGALGTVFSKKAVHSALSLAMTMICLAMFYLAQGAYFLGVVQIVVYT 84

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GA+++ FLF++M++ +    +     +G    +    I  A LI+ A             
Sbjct: 85  GAIMMLFLFVLMLVGVSSADSLVETIKGQRKLAVLAAIAFAVLIMVALGRARLGTFAGSG 144

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISKQ 179
                G NV+N+  +++++Y +  E++  +L+ + +GA+V+  R R   R  +R+ +  +
Sbjct: 145 PANAGGGNVKNLADLIFSKYFWAFEVTSALLITAAVGAMVMTHRERLVARKSQRELVEDR 204

Query: 180 LES 182
           + +
Sbjct: 205 VRT 207


>gi|325924684|ref|ZP_08186122.1| NADH dehydrogenase subunit J [Xanthomonas perforans 91-118]
 gi|325544890|gb|EGD16235.1| NADH dehydrogenase subunit J [Xanthomonas perforans 91-118]
          Length = 220

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +L FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 2   MDWVTLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        SA   
Sbjct: 62  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 121

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            +Q      + + MVK+   K +
Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204


>gi|110225673|ref|YP_665679.1| NADH dehydrogenase subunit 6 [Nephroselmis olivacea]
 gi|6066188|gb|AAF03206.1|AF110138_38 NADH dehydrogenase subunit 6 [Nephroselmis olivacea]
          Length = 197

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 7/184 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +FS +AII   LV+  +NP++SV  LI  F +AAGL L+L  +F AM+ LVVYVGA+
Sbjct: 1   MFSIFSSLAIICGILVIRAKNPVHSVLFLILVFCHAAGLLLMLDLDFFAMVFLVVYVGAI 60

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGELS-- 122
            V FLF++MML+I IE               IG++     L+V   +F+   +   L+  
Sbjct: 61  AVLFLFVVMMLNIKIEEVYETALPYLPLGGLIGLIFVTEILLVVERDFIPMISSSSLNLQ 120

Query: 123 ---RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
               L    + ++ IG+++YT Y +   ++  ILL++MIGAIVL +     +KRQ++  Q
Sbjct: 121 YIQFLPETSSTIQAIGELIYTYYFFYFIVASLILLIAMIGAIVLTMYKGAGVKRQEVFFQ 180

Query: 180 LESN 183
               
Sbjct: 181 NARE 184


>gi|317097235|ref|YP_004123364.1| NADH dehydrogenase subunit 6 [Plakortis simplex]
 gi|308912757|gb|ADO51513.1| NADH dehydrogenase subunit 6 [Plakortis simplex]
          Length = 197

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+
Sbjct: 4   LFYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS--------------NF 112
            + FLF+IMML++                  +G+     I                  NF
Sbjct: 64  AILFLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNGDTDYANF 123

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           M      ++S  + K +N+E +G+VLYT Y Y   ++ FILL++MIGAIVL      ++K
Sbjct: 124 MDVLDFSDVSLEIIKFSNIEALGRVLYTDYFYSFILASFILLVAMIGAIVLTHELGIELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q+  N
Sbjct: 184 RQDLFIQISRN 194


>gi|282897415|ref|ZP_06305417.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Raphidiopsis
           brookii D9]
 gi|281198067|gb|EFA72961.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Raphidiopsis
           brookii D9]
          Length = 214

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 2/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +QS+ F +   M I ++  VV   N +YS F L   F++ AGL+LLL  +FVA   +++Y
Sbjct: 19  VQSVSFGILGAMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQVLIY 78

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF IM+++   + A        L     G+++  L    S  ++ +  G  +
Sbjct: 79  VGAINVLILFAIMLVNKRQDFA--AIPSAGLRKIVTGVVSLGLFALLSTMVLATPWGNTT 136

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                 N+V  IG+ L++ +  P E++  +LL++M+GAI+L  R 
Sbjct: 137 TPPATQNSVVVIGEHLFSDFLLPFELASILLLIAMVGAIILARRE 181


>gi|133900396|gb|ABO41364.1| NADH dehydrogenase subunit 6 [Bischofia javanica]
          Length = 179

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177


>gi|312200058|ref|YP_004020119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp.
           EuI1c]
 gi|311231394|gb|ADP84249.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp.
           EuI1c]
          Length = 287

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 5/199 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++L F++ + +A+I +  +V  +  ++    L+      A  +LL  A F+  + +VVY 
Sbjct: 19  ETLTFWIIAPIAVIGALGMVFAKKAVHGALMLVANLFCVAVCYLLQDAPFLGFVQIVVYT 78

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVF--SAEGE 120
           GA++V FLF++M++ ++   +     RG  + +  +G+  A L+V      +    A G 
Sbjct: 79  GAIMVLFLFVLMLIGVESSESLVETLRGQRVAAVVLGLGFAGLLVFPLGKAIKNQPAAGV 138

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                  G N+  I ++L+TQY +  E    +L+++ +GA++L  R R    R    + L
Sbjct: 139 ADVNQAGGGNIHAIARLLFTQYVFAFEAVSALLVIAAVGAMILSHRERTG-PRPSQKETL 197

Query: 181 ESNPDNSIVMVKVKSGKGI 199
                   V+  V  G G+
Sbjct: 198 RRRIAEGRVLTPV-PGPGV 215


>gi|133900442|gb|ABO41387.1| NADH dehydrogenase subunit 6 [Endospermum moluccanum]
          Length = 179

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTASLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|255037826|ref|YP_003088447.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter
           fermentans DSM 18053]
 gi|254950582|gb|ACT95282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter
           fermentans DSM 18053]
          Length = 172

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 1/167 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M     FFY  SF+ I+S+ +VV  RNPI+SV  LI  F   +G ++LL A+F+A + ++
Sbjct: 1   MNSAVSFFYFLSFLTILSAVMVVVSRNPIHSVLYLILTFFTLSGHYILLNAQFLAAVNII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V FLF+IM L++  +  E +     + +  +G     ++  A           
Sbjct: 61  VYAGAIMVLFLFVIMFLNMKQDQEESKTNLTKIAATIVGGTVFVILFGAYRKTAIEPFNP 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +    +   +E++G +L+  Y  P E++  +LL++M+GA++L  R 
Sbjct: 121 QTY-DSQIGMIESLGHMLFRDYLLPFELASILLLVAMVGAVLLGKRE 166


>gi|67920417|ref|ZP_00513937.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Crocosphaera
           watsonii WH 8501]
 gi|67857901|gb|EAM53140.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Crocosphaera
           watsonii WH 8501]
          Length = 236

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 7/167 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + II++  VV + N +YS F L   F++ +G+++LL A+FVA   +++Y
Sbjct: 35  VQIISFAILAGLVIITALGVVLLENIVYSAFLLGGVFISISGIYILLNADFVAAAQVLIY 94

Query: 63  VGAVIVFFLFIIMMLDIDIEVAE---PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VGAV V  LF IM+++   + +    P  +RG       G+ A    +  +  ++     
Sbjct: 95  VGAVNVLILFAIMLVNKKQDYSSIPTPWIRRGATALVCAGLFA----LLGTMVLITPWSI 150

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           E +      N V  IGK  ++ +  P E++  +LL++M+GAIVL  R
Sbjct: 151 ESNAPGLIENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVLARR 197


>gi|133900516|gb|ABO41424.1| NADH dehydrogenase subunit 6 [Ostodes paniculata]
          Length = 179

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHKTTRVKRQDVFRRNAIDF 177


>gi|159902716|ref|YP_001550060.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9211]
 gi|159887892|gb|ABX08106.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9211]
          Length = 200

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 8/168 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F +   + I  S  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   STEQICFLILGLIVIGGSLGVVLLNNIVYSAFLLGGVFMGVAGLYLLLNASFVAAAQILV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAE---PRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           YVGAV V  LF IM+++   E+      R ++        G+L     V  +   +F   
Sbjct: 66  YVGAVNVLILFAIMLVNKKEELKPIKALRTRKILSAGVCTGLLILLFRVDITTPWIFPGP 125

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +  L     + E IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 126 NSIGEL-----STERIGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 168


>gi|133900564|gb|ABO41448.1| NADH dehydrogenase subunit 6 [Trigonia nivea]
          Length = 179

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEIFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|256380656|ref|YP_003104316.1| NADH dehydrogenase subunit J [Actinosynnema mirum DSM 43827]
 gi|255924959|gb|ACU40470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinosynnema
           mirum DSM 43827]
          Length = 277

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 96/205 (46%), Gaps = 13/205 (6%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             ++  F++   +A+  +  ++  RN ++S   L+   ++  GL+++  A F+  + ++V
Sbjct: 21  TGEAAAFWVLGPLALAGALGMLFARNAVHSALWLVMTMLSLGGLYMVQQAPFLGFVQIIV 80

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSAE 118
           Y GA+++ FLF++M++  D   +     RG         +G     +   A         
Sbjct: 81  YTGAIMMLFLFVLMLVGRDSSDSVVEVLRGQRLAAAVLGLGFGGLVVGALARALTEVQPV 140

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM----LRHRRDIKRQ 174
           G +      G NV NIG  ++T Y +P E++  +L+ + +GA+VL     +R  +  +R+
Sbjct: 141 GLVEANTTGGGNVANIGARIFTDYLFPFELTSALLITAAVGAMVLAFTSKIRETKKSQRE 200

Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199
            + ++   +   S+       G G+
Sbjct: 201 LVVERFRGDRPGSL------PGPGV 219


>gi|133900572|gb|ABO41452.1| NADH dehydrogenase subunit 6 [Dillenia philippinensis]
          Length = 179

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFFIPVFCDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNA 174


>gi|257852608|gb|ACV71316.1| NADH dehydrogenase subunit 6 [Hevea sp. Gillespie 4272]
 gi|257852610|gb|ACV71317.1| NADH dehydrogenase subunit 6 [Hura crepitans]
 gi|257852614|gb|ACV71319.1| NADH dehydrogenase subunit 6 [Manihot grahamii]
          Length = 178

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900512|gb|ABO41422.1| NADH dehydrogenase subunit 6 [Neoscortechinia kingii]
          Length = 179

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900456|gb|ABO41394.1| NADH dehydrogenase subunit 6 [Galearia filiformis]
 gi|257852660|gb|ACV71342.1| NADH dehydrogenase subunit 6 [Panda oleosa]
          Length = 178

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTGYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|229328270|ref|YP_002860283.1| NADH dehydrogenase subunit 6 [Megaceros aenigmaticus]
 gi|186695239|gb|ACC86806.1| NADH dehydrogenase subunit 6 [Nothoceros aenigmaticus]
          Length = 201

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 11/198 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + S +A++S       +NP++SV   I  F N +GL +LLG +  AMI LVVYVGA
Sbjct: 2   ILFSVPSSIALVSGVTATRAKNPVHSVLFSIPVFRNTSGLLVLLGLDPFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V    +    +I I        R        G IL  E+     N  +     +LS  
Sbjct: 62  IAVSPSSVATTSNIKIAEIHENVLRYLPVGGITGLILLLEIFFIVDNDYIPILPTKLSTT 121

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     +    N+E +G +LYT Y      S FI L++MIGA VL +     +KRQ
Sbjct: 122 YLTYTVYAGKIQSWTNLETLGNLLYTTYFTSFLFSSFISLVAMIGATVLTMHRTTRVKRQ 181

Query: 175 DISKQLESNPDNSIVMVK 192
           D+ +Q   +  N+I  ++
Sbjct: 182 DVFRQNARDFRNTIKKIR 199


>gi|257852748|gb|ACV71386.1| NADH dehydrogenase subunit 6 [Daphniphyllum macropodum]
          Length = 178

 Score =  140 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYKVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   +
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176


>gi|133900478|gb|ABO41405.1| NADH dehydrogenase subunit 6 [Irvingia malayana]
 gi|133900482|gb|ABO41407.1| NADH dehydrogenase subunit 6 [Klainedoxa gabonensis]
          Length = 179

 Score =  140 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900576|gb|ABO41454.1| NADH dehydrogenase subunit 6 [Tetrastigma obovatum]
 gi|133900578|gb|ABO41455.1| NADH dehydrogenase subunit 6 [Tetrastigma rumicispermum]
 gi|133900580|gb|ABO41456.1| NADH dehydrogenase subunit 6 [Tetrastigma voinierianum]
          Length = 179

 Score =  140 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAEKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   +
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176


>gi|257852664|gb|ACV71344.1| NADH dehydrogenase subunit 6 [Aporusa frutescens]
          Length = 178

 Score =  140 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI +Q  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRQNA 174


>gi|133900402|gb|ABO41367.1| NADH dehydrogenase subunit 6 [Byrsonima crassifolia]
          Length = 179

 Score =  140 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900496|gb|ABO41414.1| NADH dehydrogenase subunit 6 [Maprounea guianensis]
          Length = 179

 Score =  140 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFXDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTGVKRQDIFRRNAIDF 177


>gi|257852704|gb|ACV71364.1| NADH dehydrogenase subunit 6 [Cephalotus follicularis]
 gi|257852706|gb|ACV71365.1| NADH dehydrogenase subunit 6 [Rourea minor]
 gi|257852710|gb|ACV71367.1| NADH dehydrogenase subunit 6 [Crinodendron hookerianum]
 gi|257852712|gb|ACV71368.1| NADH dehydrogenase subunit 6 [Sloanea berteroana]
 gi|257853521|gb|ACV71763.1| NADH dehydrogenase subunit 6 [Averrhoa carambola]
          Length = 178

 Score =  140 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177


>gi|133900568|gb|ABO41450.1| NADH dehydrogenase subunit 6 [Vantanea guianensis]
          Length = 178

 Score =  140 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|118465874|ref|YP_883194.1| NADH dehydrogenase subunit J [Mycobacterium avium 104]
 gi|254776464|ref|ZP_05217980.1| NADH dehydrogenase subunit J [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|118167161|gb|ABK68058.1| NADH dehydrogenase subunit j [Mycobacterium avium 104]
          Length = 274

 Score =  140 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 91/183 (49%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +  VV   N +YS   L    +  A  +++  A F+ ++ +VV
Sbjct: 27  TGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVV 86

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   +     +   +++ A+   V S     
Sbjct: 87  YTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVAAGVGFGILLIAAVGNVASGGFAG 146

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NVE +  +++++Y +  E++  +L+ + +GA+VL  R R   +R+   ++L 
Sbjct: 147 LTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER--FERRKTQRELS 204

Query: 182 SNP 184
              
Sbjct: 205 QER 207


>gi|56791564|gb|AAW30320.1| NADH dehydrogenase subunit 6 [Berberis bealei]
          Length = 179

 Score =  140 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
            S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V F
Sbjct: 1   LSSPALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSF 60

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----- 124
           LF++MM  I I        R    S  IG IL  E+     N  +       +       
Sbjct: 61  LFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYT 120

Query: 125 -----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                +    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ +
Sbjct: 121 VHAGKIRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFR 179


>gi|133900390|gb|ABO41361.1| NADH dehydrogenase subunit 6 [Balanops vieillardii]
          Length = 179

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLEALGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900388|gb|ABO41360.1| NADH dehydrogenase subunit 6 [Austrobuxus megacarpus]
          Length = 179

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I          R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IKKAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|319787434|ref|YP_004146909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465946|gb|ADV27678.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 215

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 4/179 (2%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82
           ++VRNP+ +V  LI  F + A  +LL+GAEF+ +  ++VYVGAV+V FLF++MMLDID+ 
Sbjct: 23  ISVRNPVNAVLCLILTFFSVACTWLLVGAEFLGVALILVYVGAVMVLFLFVVMMLDIDVA 82

Query: 83  VAEPRKKRG----FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
                  R      + +  + +    LI   +           + L    +N   + + L
Sbjct: 83  ALREGWVRFLPVGVVVAVVMLVQVLALIGVKARTATPFPADNAAALAADASNTRWLAETL 142

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           +TQY  P E +  IL +++I A+++ LR R  IK Q+ ++Q      + + MV + + K
Sbjct: 143 FTQYLLPFEFAAVILTVAVIAAVMITLRKRTGIKTQNPAEQSRVKAADRLRMVSMPAEK 201


>gi|58584882|ref|YP_198455.1| NADH:ubiquinone oxidoreductase chain J [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419198|gb|AAW71213.1| NADH:ubiquinone oxidoreductase chain J [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 177

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 77/180 (42%), Positives = 120/180 (66%), Gaps = 8/180 (4%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           +++VRNP+++V  LIF FV++  LF+LLGAEF+AM+ L+VY+GAV V FLF++MMLDID 
Sbjct: 1   MISVRNPVHAVLFLIFTFVSSTVLFILLGAEFIAMMVLIVYIGAVAVLFLFVVMMLDIDY 60

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-FKGNNVENIGKVLYT 140
                R  +GF   F   I+   +     +F++ S+   +S ++ +  NNV+ IG +LYT
Sbjct: 61  ----IRIHQGFAKHFTFSIILCVVFFLVISFVICSSVLNISSVIDYNANNVKAIGDLLYT 116

Query: 141 QYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
            Y Y   +SG +LL++++GAI L L+  ++ IKRQ++ KQL     +S+ +VK K GKG+
Sbjct: 117 DYMYAFHLSGILLLVAIVGAIALTLQDKKKGIKRQNVLKQL--TQSSSVKLVKAKFGKGV 174


>gi|133900488|gb|ABO41410.1| NADH dehydrogenase subunit 6 [Linum arboreum]
 gi|133900544|gb|ABO41438.1| NADH dehydrogenase subunit 6 [Reinwardtia indica]
          Length = 179

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|298489903|ref|YP_003720080.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 ['Nostoc
           azollae' 0708]
 gi|298231821|gb|ADI62957.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ['Nostoc
           azollae' 0708]
          Length = 205

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 4/198 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F +   M I ++  VV   N +YS F L   F++ AGL+LLL  +FVA   +++Y
Sbjct: 7   VQVISFGILGVMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF IM+++   + +        L      +++  L    S  +V +     S
Sbjct: 67  VGAINVLILFAIMLVNKRQDFSP--LPSAGLRKIITSLVSIGLFGLLSTMVVATPWAYSS 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQL 180
             V   +++  IG+  +T +  P E++  +LL++M+GAI+L  R     ++   D+ + +
Sbjct: 125 VPVAGESSIVLIGEHFFTDFLLPFELASILLLMAMVGAIILARREYLPDEVPSSDMPQTI 184

Query: 181 ESNPDNSIVMVKVKSGKG 198
            + P+    +V   SG G
Sbjct: 185 LTLPERPRELVSTGSGAG 202


>gi|133900430|gb|ABO41381.1| NADH dehydrogenase subunit 6 [Dicella nucifera]
 gi|133900494|gb|ABO41413.1| NADH dehydrogenase subunit 6 [Malpighia stevensii]
 gi|133900560|gb|ABO41446.1| NADH dehydrogenase subunit 6 [Thryallis longifolia]
          Length = 179

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900426|gb|ABO41379.1| NADH dehydrogenase subunit 6 [Ctenolophon englerianus]
          Length = 179

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|41409308|ref|NP_962144.1| NADH dehydrogenase subunit J [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398128|gb|AAS05758.1| NuoJ [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 274

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 91/183 (49%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +  VV   N +YS   L    +  A  +++  A F+ ++ +VV
Sbjct: 27  TGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVV 86

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   +     +   +++ A+   V S     
Sbjct: 87  YTGAVMMLFLFVLMLIGVDSAESLRETLRGQRVAAVAAGVGFGILLIAAVGNVASGGFAG 146

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NVE +  +++++Y +  E++  +L+ + +GA+VL  R R   +R+   ++L 
Sbjct: 147 LTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER--FERRKTQRELS 204

Query: 182 SNP 184
              
Sbjct: 205 QER 207


>gi|300113274|ref|YP_003759849.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Nitrosococcus watsonii C-113]
 gi|299539211|gb|ADJ27528.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           watsonii C-113]
          Length = 201

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 114/197 (57%), Gaps = 3/197 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+F+ + + ++ +VVTVRNP+ +   L+ AF  +A ++LLL AEF+A++ ++VY
Sbjct: 1   MEKTLFYIFAAILLFAATMVVTVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +GAV+V FLF++MMLD+++   +    R       + +L A  ++       F  +    
Sbjct: 61  IGAVMVLFLFVVMMLDMNLAPLQEGFARYLPVGLLVAVLIAIEMIMVLGSKNFGLDQFTV 120

Query: 123 RLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            +      NN + +G +LYT Y YP E++  ILL++++ A + +   RR  K QD  +Q+
Sbjct: 121 PVARGADYNNTKELGNLLYTVYVYPFELASVILLVAIV-AAIALALRRRPSKTQDPVQQV 179

Query: 181 ESNPDNSIVMVKVKSGK 197
              P + + +VK+ + K
Sbjct: 180 RVRPQDRVRLVKMTAEK 196


>gi|291280348|ref|YP_003497183.1| NADH-quinone oxidoreductase subunit J [Deferribacter desulfuricans
           SSM1]
 gi|290755050|dbj|BAI81427.1| NADH-quinone oxidoreductase, J subunit [Deferribacter desulfuricans
           SSM1]
          Length = 166

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 99/166 (59%), Gaps = 1/166 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+ +F+AI+S+  ++T  NP++S   ++  F + AG+F+ L AEF+A I ++VY
Sbjct: 1   MEQVAFYILAFLAIVSALFMITRTNPVHSALWMLLTFFSVAGIFVQLDAEFIAAIQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V +LF++M+L+           R  +G+    I+  + ++      V   +G+++
Sbjct: 61  AGAILVLYLFVVMLLNPKSHGFIKIPFRYAIGTVVSIIIVIQTLIAVKTTDVLGQKGDIT 120

Query: 123 RLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             V  +  NV+  GK L+T +  P EI+  +LL++MIGAIVL  + 
Sbjct: 121 DTVISQYGNVKLFGKALFTDFLVPFEIASILLLVAMIGAIVLARKE 166


>gi|133900422|gb|ABO41377.1| NADH dehydrogenase subunit 6 [Clutia myricoides]
 gi|133900470|gb|ABO41401.1| NADH dehydrogenase subunit 6 [Humiria balsamifera]
          Length = 179

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852598|gb|ACV71311.1| NADH dehydrogenase subunit 6 [Acalypha californica]
          Length = 178

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDF 177


>gi|133900424|gb|ABO41378.1| NADH dehydrogenase subunit 6 [Croton alabamensis var. alabamensis]
          Length = 179

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+        +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDEETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRRNAIDF 177


>gi|257852624|gb|ACV71324.1| NADH dehydrogenase subunit 6 [Suregada glomerulata]
          Length = 178

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GVMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852740|gb|ACV71382.1| NADH dehydrogenase subunit 6 [Vitis aestivalis]
          Length = 178

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAEKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   +
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176


>gi|133900460|gb|ABO41396.1| NADH dehydrogenase subunit 6 [Goupia glabra]
          Length = 179

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852670|gb|ACV71347.1| NADH dehydrogenase subunit 6 [Lachnostylis bilocularis]
          Length = 178

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +       +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTHRNTTSMRYTVYAVKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +   + +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHKTKKVKRQDIFRRNAIDF 177


>gi|239811642|gb|ACS27129.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo]
 gi|239811682|gb|ACS27168.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo]
 gi|288871938|dbj|BAI70624.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo]
          Length = 204

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 11/198 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +  FFYLF+ + +IS+F+ +TV NP++SV  LI  FV +A + LL+  EF++++ +++YV
Sbjct: 3   EFTFFYLFAGLILISAFMTITVSNPVHSVLFLILVFVGSAAVLLLMEVEFLSLMFIIIYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+ V FLF++MMLDI +  +     R      F+G L            VF+ + + S 
Sbjct: 63  GAIAVLFLFVVMMLDIKLSSSNNNYLRYLSIGGFLGFLFFVETYYLVETSVFAPQVDSSL 122

Query: 124 LVFKG-----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           ++               N+E +G+ LYT Y +   I+G +LL+ MIGAIVL L      K
Sbjct: 123 VLESSYQDWITRLDTLTNMECLGQFLYTYYFFHFLIAGIVLLVGMIGAIVLTLHVNHTSK 182

Query: 173 RQDISKQLESNPDNSIVM 190
            Q I KQL     N+  +
Sbjct: 183 NQLICKQLSRQVKNATFL 200


>gi|133900382|gb|ABO41357.1| NADH dehydrogenase subunit 6 [Androstachys johnsonii]
 gi|133900434|gb|ABO41383.1| NADH dehydrogenase subunit 6 [Dissiliaria muelleri]
 gi|133900506|gb|ABO41419.1| NADH dehydrogenase subunit 6 [Micrantheum hexandrum]
          Length = 179

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852708|gb|ACV71366.1| NADH dehydrogenase subunit 6 [Eucryphia milliganii]
          Length = 178

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F   +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPIPVFRETSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177


>gi|133900468|gb|ABO41400.1| NADH dehydrogenase subunit 6 [Hugonia platysepala]
          Length = 179

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852616|gb|ACV71320.1| NADH dehydrogenase subunit 6 [Moultonianthus leembruggianus]
          Length = 178

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG++   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|271962164|ref|YP_003336360.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270505339|gb|ACZ83617.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 270

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 94/171 (54%), Gaps = 2/171 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +++ ++  +V  R  +YS   L    ++ A L+ +  A F+A + ++VY 
Sbjct: 3   ETITFWVLAVVSVSAALGLVFSRKAVYSALMLGVVMLSLAVLYAVQDAPFLAAVQIIVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVA--EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV++ FLF++M++ +D   +  E  K + F  +      AA L + A N +   A+G  
Sbjct: 63  GAVMMLFLFVLMLVGVDSADSLVETIKGQRFWATIAGLGFAALLALGAGNMVFAPAKGVG 122

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
             +   G NV  + ++++T++ +  E++  +L+ + +GA+VL  R R   K
Sbjct: 123 GAVQEAGGNVPALAQLIFTRHVFAFEVTSALLITAALGAMVLAHRERVRPK 173


>gi|124024944|ref|YP_001014060.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL1A]
 gi|123960012|gb|ABM74795.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. NATL1A]
          Length = 200

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F + S + +  S  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   STELICFLILSAIIVSGSLAVVLLENIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQILV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++   +  R        G +   L++      + +     
Sbjct: 66  YVGAVNVLILFAIMLVNNKEKLKPIKGLRT--RKLISGGVCGGLLILLLRVSITTKWNLP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                     E IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPTSIGEEATEIIGEHLFTDYLLPFELASILLLMAMIGAIVLARR 168


>gi|133900380|gb|ABO41356.1| NADH dehydrogenase subunit 6 [Acridocarpus natalitius]
          Length = 179

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   ALMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852612|gb|ACV71318.1| NADH dehydrogenase subunit 6 [Lasiocroton bahamensis]
 gi|257852622|gb|ACV71323.1| NADH dehydrogenase subunit 6 [Spathiostemon javensis]
          Length = 178

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDF 177


>gi|257852602|gb|ACV71313.1| NADH dehydrogenase subunit 6 [Conceveiba martiana]
          Length = 178

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNA 174


>gi|194476796|ref|YP_002048975.1| NADH dehydrogenase subunit J [Paulinella chromatophora]
 gi|221272340|sp|B1X496|NU6C_PAUCH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, organellar
           chromatophore; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|171191803|gb|ACB42765.1| NADH dehydrogenase subunit J [Paulinella chromatophora]
          Length = 205

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 2/169 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F+  S   I+ +  VV + N +YS F L   F++ AGL+LLL A FVA   +++YV
Sbjct: 8   QLICFFALSATLILGALGVVLLPNIVYSAFLLGSVFLSVAGLYLLLNASFVAAAQVLIYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV V  LF IM+++ + E+         +  FF G++   L+V        +   ++  
Sbjct: 68  GAVNVLILFAIMLVNREEELK--VIPGLAIRRFFSGVVCMGLLVILERIATTTHWAQVGP 125

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +         IG+ L++ Y  P E++  +LL++MIGAIVL  +   D+K
Sbjct: 126 IPLGEEATIRIGEHLFSDYLLPFELASILLLIAMIGAIVLARKDLVDLK 174


>gi|257852630|gb|ACV71327.1| NADH dehydrogenase subunit 6 [Sacoglottis gabonensis]
          Length = 178

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|282900718|ref|ZP_06308660.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194518|gb|EFA69473.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Cylindrospermopsis raciborskii CS-505]
          Length = 202

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 100/197 (50%), Gaps = 4/197 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +QS+ F +   M I ++  VV   N +YS F L   F++ AGL+LLL  +FVA   +++Y
Sbjct: 7   VQSVSFGILGAMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF IM+++   + A        L     G+++  L    S  ++ +  G  +
Sbjct: 67  VGAINVLILFAIMLVNKRQDFA--VIPSAGLRKIVTGVVSLGLFALLSAMVLATPWGNTT 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQL 180
                 N+V  IG+ L++ +  P E++  +LL++M+GAI+L  R      +   ++ + +
Sbjct: 125 TPPATQNSVVVIGEHLFSDFLLPFELASILLLIAMVGAIILARREYLPDQVTPSELPQTI 184

Query: 181 ESNPDNSIVMVKVKSGK 197
            + P+    +V     +
Sbjct: 185 LTLPERPRELVSTTGNQ 201


>gi|133900574|gb|ABO41453.1| NADH dehydrogenase subunit 6 [Leea guineensis]
          Length = 179

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVSRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAEKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTQVKRQDIFRRNAIDF 177


>gi|120402874|ref|YP_952703.1| NADH dehydrogenase subunit J [Mycobacterium vanbaalenii PYR-1]
 gi|119955692|gb|ABM12697.1| NADH dehydrogenase subunit J [Mycobacterium vanbaalenii PYR-1]
          Length = 241

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 95/181 (52%), Gaps = 2/181 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++F+ +++  +  VV     +YS  SL    +  A L++   A F+ ++ +VVY 
Sbjct: 3   EAVLFWVFAVVSVTGALGVVAAPKAVYSAISLATTMIALAVLYIAQDAPFLGVVQIVVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF++M++ +D   +     RG   +  +  L   +++ A    V +       
Sbjct: 63  GAVMMLFLFVLMLIGVDSSESLVETLRGQRVAAIVVGLGFGVLLVAGVGNVSATGFVGLD 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
              +  NVE +  +++T+Y +  E++G +L+ + +GA+VL  R R   +R+   ++L + 
Sbjct: 123 QANEDGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRER--FERRKTQRELAAE 180

Query: 184 P 184
            
Sbjct: 181 R 181


>gi|257852734|gb|ACV71379.1| NADH dehydrogenase subunit 6 [Heterostemon otophorus]
          Length = 178

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIYEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSIILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177


>gi|257852650|gb|ACV71337.1| NADH dehydrogenase subunit 6 [Lophopyxis maingayi]
          Length = 178

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F   +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYMVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +   + +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTKRVKRQDIFRRNAIDF 177


>gi|133900432|gb|ABO41382.1| NADH dehydrogenase subunit 6 [Dichapetalum macrocarpum]
          Length = 179

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|257852582|gb|ACV71303.1| NADH dehydrogenase subunit 6 [Centroplacus glaucinus]
          Length = 178

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|257852746|gb|ACV71385.1| NADH dehydrogenase subunit 6 [Soyauxia floribunda]
          Length = 178

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVFRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   +
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176


>gi|257852692|gb|ACV71358.1| NADH dehydrogenase subunit 6 [Trigoniastrum hypoleucum]
          Length = 178

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +K+QDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKKQDIFRRNAIDF 177


>gi|257852580|gb|ACV71302.1| NADH dehydrogenase subunit 6 [Bhesa robusta]
          Length = 178

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++M+GAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMMGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|133900524|gb|ABO41428.1| NADH dehydrogenase subunit 6 [Petalostigma pubescens]
          Length = 179

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRRNAIDF 177


>gi|315445438|ref|YP_004078317.1| NADH dehydrogenase subunit J [Mycobacterium sp. Spyr1]
 gi|315263741|gb|ADU00483.1| NADH dehydrogenase subunit J [Mycobacterium sp. Spyr1]
          Length = 239

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 93/181 (51%), Gaps = 2/181 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++ + +++  +  V+     +YS  SL    +  A L++  GA F+ ++ +VVY 
Sbjct: 3   ETILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF++MM+ +D   +     RG   +     L   +++ A    V +       
Sbjct: 63  GAVMMLFLFVLMMIGVDSSESLVETLRGQRIAALAVGLGFGILLIAGIGSVSATGIVGLD 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
               G NVE +  +++T+Y +  E++G +L+ + +GA+VL  R R   +R+   ++L   
Sbjct: 123 QANGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRER--FQRRKTQRELAVE 180

Query: 184 P 184
            
Sbjct: 181 R 181


>gi|257852648|gb|ACV71336.1| NADH dehydrogenase subunit 6 [Durandea pentagyna]
          Length = 178

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852674|gb|ACV71349.1| NADH dehydrogenase subunit 6 [Tetracoccus dioicus]
          Length = 178

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852646|gb|ACV71335.1| NADH dehydrogenase subunit 6 [Lozania pittieri]
          Length = 178

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177


>gi|296169181|ref|ZP_06850835.1| NADH-quinone oxidoreductase subunit J [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896160|gb|EFG75826.1| NADH-quinone oxidoreductase subunit J [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 278

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 90/183 (49%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A++ +  VV   N +YS   L    +  A  +++  A F+ ++ +VV
Sbjct: 31  TGEAVAFWVLGALALVGAIGVVLSVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVV 90

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +      G   +  +  +   +++ A+     +     
Sbjct: 91  YTGAVMMLFLFVLMLIGVDSAESLKETLHGQRIAAVLAGVGFGVLLIAAIGSGATGGFAG 150

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NVE +  +++++Y +  E++  +L+ + IGA+VL  R R   +R+   ++L 
Sbjct: 151 LTAANANGNVEGLAALIFSRYVWAFELTSALLITAAIGAMVLAHRER--FERRKTQRELS 208

Query: 182 SNP 184
              
Sbjct: 209 QER 211


>gi|313768501|ref|YP_004062177.1| NADH dehydrogenase subunit 6 [Gracilariophila oryzoides]
 gi|312844628|gb|ADR03193.1| NADH dehydrogenase subunit 6 [Gracilariophila oryzoides]
          Length = 202

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 7/201 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M      + LFS   I+SS +V+++ N ++S+  LI  F N AGL LLLGAEF++ + L+
Sbjct: 1   MYTDLFLYLLFSSFTIVSSLMVISLSNAVHSILFLILVFCNVAGLLLLLGAEFLSFMLLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGA+ V FLF++MML++            G +G     IL+ +L+   ++F  F  + 
Sbjct: 61  VYVGAIAVLFLFVVMMLNVKKTSTNLGFFAIGPVGLITFFILSNQLLGVFNDFDTFGLKQ 120

Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                           N++ +GKVLYT+Y++   +SG ILL++M+GAIVL +  R D+K+
Sbjct: 121 KDLIWISWITEHNNITNIQAVGKVLYTKYSFLFILSGLILLVAMLGAIVLTMHQRTDVKK 180

Query: 174 QDISKQLESNPDNSIVMVKVK 194
           Q I  QL  N   SI  + ++
Sbjct: 181 QRIELQLSRNFGGSIKFINLR 201


>gi|257852644|gb|ACV71334.1| NADH dehydrogenase subunit 6 [Lacistema aggregatum]
          Length = 178

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 11/176 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+ V FLF++MM +
Sbjct: 1   GLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVVMMFN 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +       +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   +
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176


>gi|257852638|gb|ACV71331.1| NADH dehydrogenase subunit 6 [Cyrillopsis paraensis]
          Length = 178

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|302536177|ref|ZP_07288519.1| NADH dehydrogenase subunit J [Streptomyces sp. C]
 gi|302445072|gb|EFL16888.1| NADH dehydrogenase subunit J [Streptomyces sp. C]
          Length = 270

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 85/167 (50%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   +A+I +   + ++  ++S   L    +  A  +L  GA F+ ++ +VVY 
Sbjct: 15  EAVQFWVLGTVAVIGALCTILMKKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQVVVYT 74

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++ FLF++M++ +    +     +G      +  L   +++ A              
Sbjct: 75  GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLAALCGLGFGILLIAGIGNAGLTHFNGLG 134

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            V    +VE + ++++T+Y +  EI+G +L+ + +GA+VL  R R +
Sbjct: 135 KVNSAGHVEGLAELIFTRYIFAFEITGALLITAAVGAMVLTHRERTE 181


>gi|56791582|gb|AAW30329.1| NADH dehydrogenase subunit 6 [Lonicera sp. Bergthorsson 0301]
          Length = 178

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V 
Sbjct: 1   VLSSLALVSGLMVVRAKNPVHSVSFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVS 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124
           FLF++MM  I I        R    S  IG I   E+     N  +     + +      
Sbjct: 61  FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRY 120

Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                 V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+
Sbjct: 121 MVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDV 178


>gi|254819281|ref|ZP_05224282.1| NADH dehydrogenase subunit J [Mycobacterium intracellulare ATCC
           13950]
          Length = 274

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 91/183 (49%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +  VV   N +YS   L    +  A  +++  A F+ ++ +VV
Sbjct: 27  TGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVV 86

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   +     +   +++ A+   V +     
Sbjct: 87  YTGAVMMLFLFVLMLIGVDSAESLRETLRGQRVAAVAAGVGFGILLIAAIGDVATGGFAG 146

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NVE +  +++++Y +  E++  +L+ + +GA+VL  R R   +R+   ++L 
Sbjct: 147 LTTANAAGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER--FERRKTQRELS 204

Query: 182 SNP 184
              
Sbjct: 205 QER 207


>gi|133900394|gb|ABO41363.1| NADH dehydrogenase subunit 6 [Bernardia incana]
          Length = 179

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G ++YT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLIYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTRVKRQDLFRRNAIDF 177


>gi|133900440|gb|ABO41386.1| NADH dehydrogenase subunit 6 [Elatine triandra]
          Length = 179

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852744|gb|ACV71384.1| NADH dehydrogenase subunit 6 [Peridiscus lucidus]
          Length = 178

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 90/174 (51%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +   + +++            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLQTQINTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNA 174


>gi|133900558|gb|ABO41445.1| NADH dehydrogenase subunit 6 [Tapura guianensis]
          Length = 179

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDF 177


>gi|133900492|gb|ABO41412.1| NADH dehydrogenase subunit 6 [Malesherbia linearifolia]
          Length = 179

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRRNAIDF 177


>gi|133900386|gb|ABO41359.1| NADH dehydrogenase subunit 6 [Atuna racemosa]
 gi|133900418|gb|ABO41375.1| NADH dehydrogenase subunit 6 [Chrysobalanus icaco]
 gi|133900464|gb|ABO41398.1| NADH dehydrogenase subunit 6 [Hirtella bicornis]
          Length = 179

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900392|gb|ABO41362.1| NADH dehydrogenase subunit 6 [Bergia texana]
          Length = 179

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900532|gb|ABO41432.1| NADH dehydrogenase subunit 6 [Pogonophora schomburgkiana]
          Length = 179

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRKTTPLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDF 177


>gi|226365389|ref|YP_002783172.1| NADH dehydrogenase subunit J [Rhodococcus opacus B4]
 gi|226243879|dbj|BAH54227.1| NADH-quinone oxidoreductase chain J [Rhodococcus opacus B4]
          Length = 272

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 88/188 (46%), Gaps = 1/188 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F++ + +A+I +  VV+    +YS   L    +  A  ++  GA F+ ++ +VV
Sbjct: 20  TGEGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIAQGAPFLGVVQIVV 79

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   +     L   L++         +    
Sbjct: 80  YTGAVMMLFLFVLMLIGVDSSESLVENLRGQRVAAIAAGLGFGLLLIGGFGRASVSAFTG 139

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQL 180
                 G NV+ + ++++ +Y +  E++G +L+ + IGA+VL  R R    K Q    Q 
Sbjct: 140 LDQANAGGNVQGLAELVFVRYVWAFELTGALLITATIGAMVLAHRERFERRKDQRELSQD 199

Query: 181 ESNPDNSI 188
                  +
Sbjct: 200 RVREGARV 207


>gi|133900504|gb|ABO41418.1| NADH dehydrogenase subunit 6 [Mesua sp. Coode 7884]
          Length = 179

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|126659018|ref|ZP_01730159.1| NADH dehydrogenase subunit J [Cyanothece sp. CCY0110]
 gi|126619675|gb|EAZ90403.1| NADH dehydrogenase subunit J [Cyanothece sp. CCY0110]
          Length = 208

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 1/164 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + II++  VV + N +YS F L   F++ +G+++LL A+FVA   +++Y
Sbjct: 7   VQVISFAILAALVIIAALGVVLLENIVYSAFLLGGVFISISGIYILLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   + +     R    S    +      + A+  ++     E +
Sbjct: 67  VGAVNVLILFAIMLVNKKQDYSN-LPGRWLKRSATALVCGGLFALLATMVLITPWSLETN 125

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                 N V  IGK  ++ +  P E++  +LL++M+GAIVL  R
Sbjct: 126 APGLIENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVLARR 169


>gi|257852738|gb|ACV71381.1| NADH dehydrogenase subunit 6 [Fagus grandifolia]
          Length = 178

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 11/178 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   +  
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDFK 178


>gi|11465629|ref|NP_049300.1| NADH dehydrogenase subunit 6 [Porphyra purpurea]
 gi|4106936|gb|AAD03103.1| NADH dehydrogenase subunit 6 [Porphyra purpurea]
          Length = 209

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 112/204 (54%), Gaps = 14/204 (6%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F++FS ++++S+ LVV++ N +YSV  LI  F N A + LLLGAEF++ + L+VYVGA+
Sbjct: 6   LFWIFSIISLLSACLVVSLANAVYSVLFLIIVFCNTASILLLLGAEFLSFLFLIVYVGAI 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114
            V FLF++MML++ I+ A+       L  F I  +       A    +            
Sbjct: 66  AVLFLFVVMMLNVKIDGAKVNYTTILLIGFLISSILLFQFSSAMQIDLDAYSNIRLNLTE 125

Query: 115 --FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
             F      ++     +NVE+IG VLYT Y+    +  FILLL+MIG+I+L +  R  +K
Sbjct: 126 VNFPTTTLWTQENSLPSNVESIGLVLYTSYSLVFILCAFILLLAMIGSIILTMNQRNGVK 185

Query: 173 RQDISKQLESNPDNSIVMVKVKSG 196
           +Q I+ QL  + +  +  + ++  
Sbjct: 186 KQQITLQLHRDQNKVVRFLDLRKN 209


>gi|133900384|gb|ABO41358.1| NADH dehydrogenase subunit 6 [Archytaea triflora]
          Length = 179

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900566|gb|ABO41449.1| NADH dehydrogenase subunit 6 [Turnera ulmifolia]
          Length = 178

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRRNA 174


>gi|133900508|gb|ABO41420.1| NADH dehydrogenase subunit 6 [Microdesmis puberula]
          Length = 179

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTSQVKRQDVFRRNAIDF 177


>gi|133900570|gb|ABO41451.1| NADH dehydrogenase subunit 6 [Vismia sp. Miller et al. 9313]
          Length = 179

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI LVV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFLVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG++   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|257852728|gb|ACV71376.1| NADH dehydrogenase subunit 6 [Guaiacum sanctum]
          Length = 178

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNA 174


>gi|133900458|gb|ABO41395.1| NADH dehydrogenase subunit 6 [Garcinia hessii]
          Length = 179

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG++   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852642|gb|ACV71333.1| NADH dehydrogenase subunit 6 [Ochthocosmus longipedicellatus]
          Length = 178

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   +
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAID 176


>gi|313768527|ref|YP_004062202.1| NADH dehydrogenase subunit 6 [Gracilariopsis andersonii]
 gi|312844654|gb|ADR03218.1| NADH dehydrogenase subunit 6 [Gracilariopsis andersonii]
          Length = 202

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 114/201 (56%), Gaps = 7/201 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M      + LFS  AI++S +V+++ N ++SV  LI  F N AGL LLLGAEF++ + L+
Sbjct: 1   MYTDLFLYLLFSSFAILASLMVISLSNAVHSVLFLILVFCNVAGLLLLLGAEFLSFMLLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGA+ V FLF++MML++            G +G     IL  +L+   ++F  F  + 
Sbjct: 61  VYVGAIAVLFLFVVMMLNVKKTSTNLGFFAIGPIGLITFFILINQLLGIFNDFDTFGLKQ 120

Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                           N++ +GKVLYT+Y++   +SG ILL++M+GAIVL +  R D+K+
Sbjct: 121 KDLIWISWITEHNNLTNIQAVGKVLYTKYSFLFILSGLILLVAMLGAIVLTMHQRTDVKK 180

Query: 174 QDISKQLESNPDNSIVMVKVK 194
           Q I  QL  N   SI  + ++
Sbjct: 181 QKIELQLNRNFGGSIKFINLR 201


>gi|257852576|gb|ACV71300.1| NADH dehydrogenase subunit 6 [Ploiarium alternifolium]
          Length = 178

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852584|gb|ACV71304.1| NADH dehydrogenase subunit 6 [Licania michauxii]
          Length = 178

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852632|gb|ACV71328.1| NADH dehydrogenase subunit 6 [Cratoxylum formosum]
          Length = 178

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNNIDF 177


>gi|226939465|ref|YP_002794538.1| NuoJ [Laribacter hongkongensis HLHK9]
 gi|226714391|gb|ACO73529.1| NuoJ [Laribacter hongkongensis HLHK9]
          Length = 211

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 122/203 (60%), Gaps = 10/203 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + FY  S + + +   V+T +NP+++V  L+ AF  +AG +LL+ AEF+A+  ++
Sbjct: 1   MSFQLILFYALSVLLVYAGLRVITAKNPVHAVLHLVLAFFVSAGHWLLIEAEFLAIALVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI+ E    + + GF        L A +++    +++ S    
Sbjct: 61  VYVGAVMVLFLFVVMMLDINFE----KLREGFWKHLPFAGLVAVVLIAELAYVLTSPAAG 116

Query: 121 LSR------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           LS       L    +NV+++G+ +YT Y YP E++  +LLL+++ AI L  R+R+D K  
Sbjct: 117 LSDMPSPAALAADYSNVKDLGRQIYTVYLYPFELAAVLLLLAIVAAIALTQRNRKDTKWV 176

Query: 175 DISKQLESNPDNSIVMVKVKSGK 197
           D + Q+ +  ++ + +VK+++ K
Sbjct: 177 DPAVQVMARREDRVRIVKMQAVK 199


>gi|257852604|gb|ACV71314.1| NADH dehydrogenase subunit 6 [Dalechampia spathulata]
          Length = 178

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ++ ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTRVKRQELFRRNA 174


>gi|254382433|ref|ZP_04997792.1| NADH dehydrogenase subunit J [Streptomyces sp. Mg1]
 gi|194341337|gb|EDX22303.1| NADH dehydrogenase subunit J [Streptomyces sp. Mg1]
          Length = 270

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 89/183 (48%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +   + ++  ++S  SL    +  A  +L  GA F+ ++ ++V
Sbjct: 13  TGEAVQFWVLGTVAVIGALSTILMKKAVHSALSLAGTMIILAVFYLANGAYFLGVVQVIV 72

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++ +    +     +G      +  L    ++ A            
Sbjct: 73  YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWMAVLCALGFGTLLIAGIAHARLNHFNG 132

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
              +  G +VE +  +++T+Y +  EI+G +L+ + +GA+VL  R R +  R    ++L 
Sbjct: 133 LGRINSGGHVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RAATQRELA 190

Query: 182 SNP 184
              
Sbjct: 191 ERR 193


>gi|317134163|ref|YP_004123416.1| NADH dehydrogenase subunit 6 [Corticium candelabrum]
 gi|308912772|gb|ADO51527.1| NADH dehydrogenase subunit 6 [Corticium candelabrum]
          Length = 197

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY      ++S  +V++  NPI+SVF LI  F  A+ LF+LL  +F+A+I L+VYVGA+
Sbjct: 4   LFYAIVLAVLVSGIMVISALNPIHSVFWLIAVFGGASALFILLNIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE------- 118
            + FLF+IMML++ D+E A        +GS     L  E+ +     +V+S         
Sbjct: 64  AILFLFVIMMLNLTDLESAGDMSNYIPIGSVMGVFLLFEIFIVGREAIVYSNRDTDYENL 123

Query: 119 ------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  ++S  +   +N+E +G++LY  Y Y   ++ FILL++MIGAIVL      ++K
Sbjct: 124 IDVLDFWDVSIEIINFSNIEALGRILYIDYFYSFLLASFILLVAMIGAIVLTHELGIELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q    
Sbjct: 184 RQDLFIQTSRK 194


>gi|254416218|ref|ZP_05029972.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Microcoleus chthonoplastes PCC 7420]
 gi|196176900|gb|EDX71910.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Microcoleus chthonoplastes PCC 7420]
          Length = 208

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 1/164 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + S M I S+  VV + N +YS F L   F++ AG +LLL A+FVA   ++VY
Sbjct: 7   VQFVSFVILSVMMIGSALGVVLLNNIVYSAFLLGGVFISMAGFYLLLNADFVAAAQILVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   E  +P   R         +      +  +  +V        
Sbjct: 67  VGAVNVLILFAIMLVN-KREDFKPITNRWIRQGATALVCLGLFALLGTMVLVTPWSIYSG 125

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             V    +V  IGK  ++ +  P E++  +LL++M+GAI+L  R
Sbjct: 126 TAVLGEGSVVEIGKHFFSDFLLPFELASVLLLMAMVGAIILARR 169


>gi|133900444|gb|ABO41388.1| NADH dehydrogenase subunit 6 [Erythrococca sp. Cheek s.n.]
          Length = 179

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNA 174


>gi|108798541|ref|YP_638738.1| NADH dehydrogenase subunit J [Mycobacterium sp. MCS]
 gi|119867641|ref|YP_937593.1| NADH dehydrogenase subunit J [Mycobacterium sp. KMS]
 gi|126434139|ref|YP_001069830.1| NADH dehydrogenase subunit J [Mycobacterium sp. JLS]
 gi|108768960|gb|ABG07682.1| NADH dehydrogenase subunit J [Mycobacterium sp. MCS]
 gi|119693730|gb|ABL90803.1| NADH dehydrogenase subunit J [Mycobacterium sp. KMS]
 gi|126233939|gb|ABN97339.1| NADH dehydrogenase subunit J [Mycobacterium sp. JLS]
          Length = 249

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 91/181 (50%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +  VV+    +YS   L    +  A L++   A F+ ++ +VV
Sbjct: 13  TSEAVVFWILGGIALIGALGVVSAPKAVYSAIFLATTMIALAVLYIAQEALFLGVVQIVV 72

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   +     +   +++ A    V ++    
Sbjct: 73  YTGAVMMLFLFVLMLVGVDNSESLVETIRGQRVAAIAVGVGFGVLLIAGIGTVSTSGFTG 132

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NVE +  +++T+Y +  E++G +L+ + +GA+VL  R R + ++      +E
Sbjct: 133 LPDANSSGNVEGLAALIFTRYLWAFELTGALLITAALGAMVLAHRERFEHRKTQRELSIE 192

Query: 182 S 182
            
Sbjct: 193 R 193


>gi|257852730|gb|ACV71377.1| NADH dehydrogenase subunit 6 [Krameria lanceolata]
          Length = 178

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTXVKRQDVFRRNA 174


>gi|6137794|ref|NP_009264.1| NADH dehydrogenase subunit 6 [Metridium senile]
 gi|3914175|sp|O47498|NU6M_METSE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|913914|gb|AAB32500.1| NADH dehydrogenase complex subunit 6 [Metridium senile]
 gi|2920996|gb|AAC04641.1| NADH dehydrogenase subunit 6 [Metridium senile]
          Length = 202

 Score =  137 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 107/199 (53%), Gaps = 19/199 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +++F+  SF  + S  +V++  NP++SVF L+ AF+++A LF+LLG +F+A++ +++Y
Sbjct: 1   MVTMYFFTLSFGTVASGIMVISALNPVHSVFWLVVAFISSAALFILLGVDFIALMFIIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDI------EVAEPRKKRGFLGSFFIGILAAELIVCASNFM--- 113
           VGA+ + FLF+IMML++           E            +G L  E I  +   M   
Sbjct: 61  VGAIAILFLFVIMMLNLTDFTPAFRRGGEADMTNYVPIGLAVGTLFFEAIASSWLIMGGP 120

Query: 114 ------VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                 + + +      + K +N+E IG++LYT   Y   +  FILL++M+GAIVL    
Sbjct: 121 YVYRGLLGAWDLANPWFLKKYHNIEAIGRILYTDCYYLFILVSFILLVAMLGAIVLTQEI 180

Query: 168 RRDI----KRQDISKQLES 182
             +I    K+QDI  Q   
Sbjct: 181 GTEIGPTAKKQDIFVQTSR 199


>gi|133900472|gb|ABO41402.1| NADH dehydrogenase subunit 6 [Hybanthus concolor]
          Length = 179

 Score =  137 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFCNISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|133900520|gb|ABO41426.1| NADH dehydrogenase subunit 6 [Passiflora coccinea]
          Length = 179

 Score =  137 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGSVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRRNAIDF 177


>gi|133900398|gb|ABO41365.1| NADH dehydrogenase subunit 6 [Brexia madagascariensis]
 gi|133900438|gb|ABO41385.1| NADH dehydrogenase subunit 6 [Elaeodendron orientale]
 gi|133900500|gb|ABO41416.1| NADH dehydrogenase subunit 6 [Gymnosporia arbutifolia]
 gi|133900502|gb|ABO41417.1| NADH dehydrogenase subunit 6 [Gymnosporia senegalensis]
          Length = 179

 Score =  137 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177


>gi|291298807|ref|YP_003510085.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568027|gb|ADD40992.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Stackebrandtia nassauensis DSM 44728]
          Length = 256

 Score =  137 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++ + + +  +  +V  R+ ++S   L    +    +++L    F+  + ++V
Sbjct: 14  TGEAITFWILAPIILGGAIGMVLARSAVHSALLLACTMLGLGVIYMLQSGPFIGFVQIIV 73

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGE 120
           Y GA+++ FLF+IM++  D + +     RG  + +  +GI  A L+       V +    
Sbjct: 74  YTGAIMMLFLFVIMLVGRDSKDSLLETLRGQRIAAIGLGIGMALLLCTGLARGVGAVSAV 133

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                    NV+ I   L+T+Y +  E++  +L+ + +GA+VL    +
Sbjct: 134 GLDEANANGNVKGIAAELFTKYVFAFEVTSALLITAAVGAMVLAHVEK 181


>gi|118472606|ref|YP_886415.1| NADH dehydrogenase subunit J [Mycobacterium smegmatis str. MC2 155]
 gi|118173893|gb|ABK74789.1| NADH dehydrogenase subunit j [Mycobacterium smegmatis str. MC2 155]
          Length = 252

 Score =  137 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 92/181 (50%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A++ +  VV  R  +YS   L    ++ A L++   A F+ ++ +VV
Sbjct: 17  TSEAVVFWVVGTVALVGAIGVVAARKAVYSAVFLACTMISLAVLYIAQDAPFLGVVQIVV 76

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D+  +     +G   +  I      ++V A    V  A    
Sbjct: 77  YTGAVMMLFLFVLMLIGVDLTESLVETIKGHRIAALIAGAGFGILVIAGIGNVSVAGFSG 136

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                 G NVE +  +++T+Y +  E++  +L+ + +GA+VL  R R + ++      +E
Sbjct: 137 LAAANSGGNVEGLAALIFTRYLWAFELTSALLITAALGAMVLAHRERFERRKTQRELAIE 196

Query: 182 S 182
            
Sbjct: 197 R 197


>gi|133900420|gb|ABO41376.1| NADH dehydrogenase subunit 6 [Clusia rosea]
          Length = 178

 Score =  137 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|317097375|ref|YP_004123584.1| NADH dehydrogenase subunit 6 [Plakina monolopha]
 gi|308912589|gb|ADO51356.1| NADH dehydrogenase subunit 6 [Plakina monolopha]
          Length = 197

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 14/191 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+
Sbjct: 4   LFYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS--------------NF 112
            + FLF+IMML++                  +G+     I                  N 
Sbjct: 64  AILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEIFIIGREAIVYNNRDSDYENL 123

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  ++S  + K  N+E +G +LYT Y Y   ++ FILL++MIGAIVL      ++K
Sbjct: 124 TDVLGFWDVSIEIIKFYNIEVLGXILYTDYFYSFILASFILLVAMIGAIVLTQELGIELK 183

Query: 173 RQDISKQLESN 183
           RQD+  Q   N
Sbjct: 184 RQDLFIQTSRN 194


>gi|133900552|gb|ABO41442.1| NADH dehydrogenase subunit 6 [Sauvagesia erecta]
          Length = 179

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV  LI  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFLILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVSRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTNSLRYMVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852594|gb|ACV71309.1| NADH dehydrogenase subunit 6 [Garcinia macrophylla]
          Length = 178

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852640|gb|ACV71332.1| NADH dehydrogenase subunit 6 [Ixonanthes reticulata]
          Length = 178

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|39995456|ref|NP_951407.1| NADH dehydrogenase I subunit J [Geobacter sulfurreducens PCA]
 gi|39982219|gb|AAR33680.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens PCA]
 gi|298504455|gb|ADI83178.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens KN400]
          Length = 167

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 96/166 (57%), Gaps = 1/166 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++ FF + + +A+++S LV+T +NPI S  SLI  F   A  +++L A F+A I ++VY
Sbjct: 1   METFFFTIVAAVAVLASILVITCKNPINSALSLILTFFCLATFYVMLDAPFMAAIQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V  +F+IM+L++  E          LGS        +L    +   +   +GE+S
Sbjct: 61  AGAIMVLIVFVIMLLNVRTEAGRRSSHTVLLGSLVGIFTLVQLFYVLNRSSLTGNKGEIS 120

Query: 123 R-LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             L+ +  + E IGK LYT +  P E++  +LL+++IGA++L  + 
Sbjct: 121 PELIHRIGHTEIIGKALYTDFLLPFEVTSILLLVAIIGAVILTKKK 166


>gi|133900490|gb|ABO41411.1| NADH dehydrogenase subunit 6 [Lunania parviflora]
          Length = 179

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   ALMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTASLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|158317827|ref|YP_001510335.1| NADH dehydrogenase subunit J [Frankia sp. EAN1pec]
 gi|158113232|gb|ABW15429.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp.
           EAN1pec]
          Length = 323

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 88/170 (51%), Gaps = 1/170 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F+L + +A++++  +V +R+ ++S   L+      A  +L+  A F+  + ++VY 
Sbjct: 19  EAWTFWLLAPVALLAALGMVLMRSAVHSALLLVVNLFCVAVFYLIQDAPFLGFVQIIVYT 78

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122
           GA++V FLF++M++ +D   +     RG  + +  +G+  A L+       +   +    
Sbjct: 79  GAIMVLFLFVLMLVGVDSSDSLVETLRGQRIAAVILGLGFAGLLAFPIGRAIDGGKAAGL 138

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                G NV  IG++L+TQY +  E    +L+++ IG +VL  R     K
Sbjct: 139 EAANTGGNVHAIGRLLFTQYVFVFEAISVLLVVAAIGTMVLGHREHTGEK 188


>gi|257852634|gb|ACV71329.1| NADH dehydrogenase subunit 6 [Eliea articulata]
          Length = 178

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG++   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|56791560|gb|AAW30318.1| NADH dehydrogenase subunit 6 [Laurus nobilis]
          Length = 182

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 11/182 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +VV  +NP++ V   I  F + +GL LLLG +F AMI+ VV++GA+   
Sbjct: 1   VLSSPALVSGLMVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAAS 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124
           FLF++MM +I I        R    S  IG IL  E+     N  +       +      
Sbjct: 61  FLFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120

Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                 V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ +
Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFR 180

Query: 179 QL 180
           + 
Sbjct: 181 RN 182


>gi|11466584|ref|NP_066474.1| NADH dehydrogenase subunit 6 [Rhodomonas salina]
 gi|10444171|gb|AAG17745.1|AF288090_21 NADH dehydrogenase subunit 6 [Rhodomonas salina]
          Length = 207

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 110/207 (53%), Gaps = 12/207 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M      FYLFS +  + +F V+  RNPI+S+  L+F F NAA L +LLGA+F+A++ L+
Sbjct: 1   MCFNIQLFYLFSSLICVCAFSVIFSRNPIHSILFLVFLFFNAAALLILLGADFLAILFLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113
           VYVGAV V FLF++MML   +   +     G L      I   E+ +     +       
Sbjct: 61  VYVGAVAVLFLFVVMMLSGKLIKTKINFFYGPLVILLAFIFLCEIFLIIEQNLNFLSSNI 120

Query: 114 -----VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + +        ++  +NVE IG VLYT + Y   +   ILL++MIGAIVL L  R
Sbjct: 121 YFLNDILNPLFIWKDKIYCLSNVEIIGSVLYTYFFYFFIVGSLILLVAMIGAIVLTLYKR 180

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKS 195
            D+K Q I KQ + N + SI + K  S
Sbjct: 181 NDLKTQFIFKQAKKNFEASIQLTKNDS 207


>gi|133900518|gb|ABO41425.1| NADH dehydrogenase subunit 6 [Parnassia grandifolia]
          Length = 179

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETLPLLPTQRNTTSLRYMVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDVFRRNAIDF 177


>gi|257852592|gb|ACV71308.1| NADH dehydrogenase subunit 6 [Garcinia latissima]
          Length = 178

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV----------FSAEGELSRLVFK 127
           I I        R    S  IG I   E+     N  +          +      +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIQLLPTQRKTAYLKYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900528|gb|ABO41430.1| NADH dehydrogenase subunit 6 [Podocalyx loranthoides]
          Length = 179

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTLVKRQDIFRRNAIDF 177


>gi|133900486|gb|ABO41409.1| NADH dehydrogenase subunit 6 [Leonia glycycarpa]
 gi|133900546|gb|ABO41439.1| NADH dehydrogenase subunit 6 [Rinorea pubiflora]
          Length = 179

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|257852628|gb|ACV71326.1| NADH dehydrogenase subunit 6 [Trigonostemon verrucosus]
          Length = 180

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGTVKRQDIFRRNAIDF 179


>gi|257852714|gb|ACV71369.1| NADH dehydrogenase subunit 6 [Plagiopteron suaveolens]
          Length = 178

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I   +    R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQISEIQEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRYTTSLRYTVYAGKVGS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYVVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177


>gi|319950460|ref|ZP_08024374.1| NADH:ubiquinone oxidoreductase subunit J [Dietzia cinnamea P4]
 gi|319435883|gb|EFV91089.1| NADH:ubiquinone oxidoreductase subunit J [Dietzia cinnamea P4]
          Length = 268

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 104/197 (52%), Gaps = 8/197 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +S+ F++ + +A+  +  VV     +YS   L    V+ A L++  GA F+ +  +VVY 
Sbjct: 6   ESVLFWILATVAVAGALGVVAAPRAVYSALCLAATMVSLAVLYMAQGAVFLGVGQIVVYT 65

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+V FLF++M++ ++   +   + RG   +  +  L   +++        +     + 
Sbjct: 66  GAVMVLFLFVVMLIGVESSDSLVERIRGHRVAAILAGLGFGVLLATG--FARAELPPFAG 123

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISKQ- 179
               G+ V  + ++L++++ +  E++G +L+++ +GA+VL  R R   R  +RQ +S+Q 
Sbjct: 124 FAAGGSEVPALAELLFSRHVWAFELTGVLLIIATLGAMVLAHRERFTGRLTQRQ-LSEQR 182

Query: 180 -LESNPDNSIVMVKVKS 195
            L+   D+S  +  + S
Sbjct: 183 FLDWQRDDSARVTPLPS 199


>gi|133900414|gb|ABO41373.1| NADH dehydrogenase subunit 6 [Celastrus orbiculatus]
          Length = 179

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SVF  I  F++ +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVFFPILVFLDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLGYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177


>gi|133900476|gb|ABO41404.1| NADH dehydrogenase subunit 6 [Hypericum empetrifolium]
          Length = 179

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKNTAYLKYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             ++E +G +LYT Y     +   ILL++MIGAIVL +   + +KRQDI ++   + 
Sbjct: 121 WTSLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKQVKRQDIFRRNSIDF 177


>gi|257852694|gb|ACV71359.1| NADH dehydrogenase subunit 6 [Tricliceras longipedunculatum]
          Length = 178

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLGYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRRNAIDF 177


>gi|257852662|gb|ACV71343.1| NADH dehydrogenase subunit 6 [Paropsia madagascariensis]
          Length = 178

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGSVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRRNAIDF 177


>gi|257852700|gb|ACV71362.1| NADH dehydrogenase subunit 6 [Viola pubescens]
          Length = 178

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|257852596|gb|ACV71310.1| NADH dehydrogenase subunit 6 [Aneulophus africanus]
          Length = 178

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQEIFRRNAIDF 177


>gi|133900412|gb|ABO41372.1| NADH dehydrogenase subunit 6 [Casearia sylvestris]
          Length = 179

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   ALMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     +              V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFIFDNESIPLLPTQRKTTSLRYTVYAVKVRN 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|257852590|gb|ACV71307.1| NADH dehydrogenase subunit 6 [Montrouziera cauliflora]
          Length = 178

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F   +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|56791572|gb|AAW30324.1| NADH dehydrogenase subunit 6 [Piper betle]
          Length = 177

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
            S  A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+ V F
Sbjct: 1   LSSPALVSGLMVVRAKNPVHSVSFPILVFCDTSGLLLLLGLDFSAMISPVVHIGAIAVSF 60

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE--------- 120
           LF++MM +I I        R    S  IG++   E+     N  +               
Sbjct: 61  LFVVMMFNIQIAETHEEVLRYLPVSGIIGLIFWWEMFFIFDNETIPLLPTHRKTTSLRYT 120

Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
             +  V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+
Sbjct: 121 VYAGKVRSWTNLETLGNLLYTYYSVRFLVPSLILLVAMIGAIVLTMHRTSKVKRQDV 177


>gi|16332084|ref|NP_442812.1| NADH dehydrogenase subunit J [Synechocystis sp. PCC 6803]
 gi|2506948|sp|P26523|NU6C_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName:
           Full=NAD(P)H dehydrogenase I, chain 6; AltName:
           Full=NDH-1, chain 6
 gi|1001393|dbj|BAA10883.1| NADH dehydrogenase subunit 6 [Synechocystis sp. PCC 6803]
          Length = 198

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + +F+ I ++  VV + N +YS F L   F++ +G+++LL A+FVA   ++VY
Sbjct: 7   VQYISFLILAFLVIGAALGVVLLSNIVYSAFLLGGVFLSISGIYILLNADFVAAAQVLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   + ++   +  +L +    ++   +    S  ++ +      
Sbjct: 67  VGAVSVLILFAIMLVNKREDFSKIPGR--WLRNVSTALVCTGIFALLSTMVLITPWQINE 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
              F  N +  IGK  ++ Y  P E++  +LL++M+GAI+L  R
Sbjct: 125 TGPFVENTLVTIGKHFFSDYLLPFELASVLLLMAMVGAIILARR 168


>gi|133900410|gb|ABO41371.1| NADH dehydrogenase subunit 6 [Caryocar glabrum]
          Length = 179

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V    NP++SV   I  F++ +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAPNPVHSVLFPILVFLDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900556|gb|ABO41444.1| NADH dehydrogenase subunit 6 [Stachystemon axillaris]
          Length = 179

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +    ++KRQ I ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTEVKRQGIFRRNAIDF 177


>gi|133900416|gb|ABO41374.1| NADH dehydrogenase subunit 6 [Cespedesia spathulata]
          Length = 179

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV  LI  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFLILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900474|gb|ABO41403.1| NADH dehydrogenase subunit 6 [Hydnocarpus sp. Chase 1301]
          Length = 181

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGGVKRQDIFRRNAIDF 179


>gi|257852636|gb|ACV71330.1| NADH dehydrogenase subunit 6 [Triadenum walteri]
          Length = 178

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKNTAYLKYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             ++E +G +LYT Y     +   ILL++MIGAIVL +   + +KRQDI ++   + 
Sbjct: 121 WTSLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKQVKRQDIFRRNSIDF 177


>gi|56791574|gb|AAW30325.1| NADH dehydrogenase subunit 6 [Platanus occidentalis]
          Length = 177

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+ V 
Sbjct: 1   VLSSPALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVS 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124
           FLF++MM  I I        R    S  IG IL  E+     N  +     + +      
Sbjct: 61  FLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFIFFNETIPLLPTQRNTTSLRY 120

Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                 V    N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD
Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYGVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQD 177


>gi|172037137|ref|YP_001803638.1| NADH dehydrogenase subunit J [Cyanothece sp. ATCC 51142]
 gi|171698591|gb|ACB51572.1| NADH dehydrogenase subunit 6 [Cyanothece sp. ATCC 51142]
          Length = 208

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 1/164 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + II++  VV + N +YS F L   F++ +G+++LL A+FVA   +++Y
Sbjct: 7   VQVISFAILAALVIIAALGVVLLENIVYSAFLLGGVFISISGIYVLLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   + +     R         +      + A+  ++     E +
Sbjct: 67  VGAVNVLILFAIMLVNKKQDYSN-LPGRWIKRGATALVCGGLFALLATMVLITPWSLESN 125

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                 N V  IGK  ++ +  P E++  +LL++M+GAIVL  R
Sbjct: 126 APGLIENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVLARR 169


>gi|145225069|ref|YP_001135747.1| NADH dehydrogenase subunit J [Mycobacterium gilvum PYR-GCK]
 gi|145217555|gb|ABP46959.1| NADH dehydrogenase subunit J [Mycobacterium gilvum PYR-GCK]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 91/179 (50%), Gaps = 2/179 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F++ + +++  +  V+     +YS  SL    +  A L++  GA F+ ++ +VVY GA
Sbjct: 2   ILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYTGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V++ FLF++MM+ +D   +     RG   +     L   +++ A    V +         
Sbjct: 62  VMMLFLFVLMMIGVDSSESLVETLRGQRIAALAVGLGFGILLIAGIGSVSATGIVGLDQA 121

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             G NVE +  +++T+Y +  E++G +L+ + +GA+VL  R R   +R+   ++L    
Sbjct: 122 NGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRER--FQRRKTQRELAVER 178


>gi|56791554|gb|AAW30315.1| NADH dehydrogenase subunit 6 [Amborella trichopoda]
          Length = 179

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A +SS +V+  +NP++SVF  I  F N +GL +LLG +F A I LVVYVGA+ V FLF+
Sbjct: 1   IASVSSVMVIRAKNPVHSVFFFILVFFNTSGLLVLLGLDFFATIFLVVYVGAIAVLFLFV 60

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-----------NFMVFSAEGELS 122
           ++MLDI I        R       IG+L    I                   +      +
Sbjct: 61  VLMLDIKIAEIHENLLRHLPVGGIIGVLFLLEIFFLVDNDYIPILPTKLSTTYLTYTVYA 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL-MLRHRRDIKRQDISKQL 180
             +    N+E +G +LYT Y     +   ILL++MIGAIV   +     +KRQD+ ++ 
Sbjct: 121 EKIQSWTNLETLGNLLYTTYFVLFLVYSLILLVAMIGAIVQKTMHKTTRVKRQDVFRRN 179


>gi|257852588|gb|ACV71306.1| NADH dehydrogenase subunit 6 [Mammea siamensis]
          Length = 178

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGLIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|113953515|ref|YP_731811.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9311]
 gi|113880866|gb|ABI45824.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6
           [Synechococcus sp. CC9311]
          Length = 199

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F   S + ++ +  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   STQLICFLALSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++A        +     G +   L    +  +V +   E 
Sbjct: 66  YVGAVNVLILFAIMLVNKKEDLAP--IPGLPIRRLLSGGVCVGLFALLTRVVVTTPWTEG 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
              + +   V  IG+ L+T Y  P E++  +LL++MIGAIVL  R  + +
Sbjct: 124 PTPIGEDATVR-IGEHLFTDYLLPFELASVLLLMAMIGAIVLARRDVQSV 172


>gi|317097078|ref|YP_004123217.1| NADH dehydrogenase subunit 6 [Plakortis halichondrioides]
 gi|308912711|gb|ADO51470.1| NADH dehydrogenase subunit 6 [Plakortis halichondrioides]
          Length = 197

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 14/190 (7%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY  +   ++S  +V++  NPI+SVF LI  F+ A+ LF+LL  +F+A+I L+VYVGA+ 
Sbjct: 5   FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR---- 123
           +  LF+IMML++                  +G+     I       +  + G+ +     
Sbjct: 65  IXXLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNGDTNYGXLM 124

Query: 124 ----------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                      + K +N+E +G+VLYT Y Y   ++ FILL++MIGAIV       ++KR
Sbjct: 125 DVLDFSDVSLEIIKFSNIEALGRVLYTDYFYSFLLASFILLVAMIGAIVXTHELGIELKR 184

Query: 174 QDISKQLESN 183
           QD+  Q   N
Sbjct: 185 QDLFIQTSRN 194


>gi|325003715|ref|ZP_08124827.1| NADH:ubiquinone oxidoreductase subunit J [Pseudonocardia sp. P1]
          Length = 284

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 93/201 (46%), Gaps = 3/201 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+  +  +V  R+ +++   L+    + A L+++  A F+  + ++V
Sbjct: 17  TGEAITFWILGPVALAGALGLVFARHAVHAALLLVLTMFSIAVLYIVQSAPFLGFVQIIV 76

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAE 118
           Y GAV++ FLF++M++  D + +     RG   +   F +G+ A  +   +      +  
Sbjct: 77  YTGAVMMLFLFVLMLVGKDSKDSVIEVLRGQRAAALVFGVGLAALLVAGISRGLTEVTPA 136

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
           G  +  +    NV  +G++++T Y    E+S  +L+++ +G +VL         +    +
Sbjct: 137 GLQAGGMGGSANVAGLGRLIFTDYLLAFELSAALLMVAALGGMVLTGSQSSQHAKLSQRE 196

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
            +          +    G G+
Sbjct: 197 TVLRRLRGQHARISPLPGPGV 217


>gi|133900510|gb|ABO41421.1| NADH dehydrogenase subunit 6 [Monotaxis megacarpa]
          Length = 181

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 13/176 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDLFRRNA 176


>gi|87123594|ref|ZP_01079445.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Synechococcus sp. RS9917]
 gi|86169314|gb|EAQ70570.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Synechococcus sp. RS9917]
          Length = 200

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F   + + +I +  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   STQLICFVALAAVVVIGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++A  +     +       + A L       ++ +     
Sbjct: 66  YVGAVNVLILFAIMLVNKREDLAPIQGL--PIRRLLSAGVCAGLFALLVRVVITTPWAVP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                     E IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPAAIGEGATERIGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 168


>gi|15610290|ref|NP_217670.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Rv]
 gi|15842730|ref|NP_337767.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis CDC1551]
 gi|31794330|ref|NP_856823.1| NADH dehydrogenase subunit J [Mycobacterium bovis AF2122/97]
 gi|121639037|ref|YP_979261.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663009|ref|YP_001284532.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Ra]
 gi|148824348|ref|YP_001289102.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis F11]
 gi|215405152|ref|ZP_03417333.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 02_1987]
 gi|215413021|ref|ZP_03421722.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A]
 gi|215428610|ref|ZP_03426529.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T92]
 gi|215432113|ref|ZP_03430032.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054]
 gi|215447443|ref|ZP_03434195.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85]
 gi|218754933|ref|ZP_03533729.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis GM 1503]
 gi|224991529|ref|YP_002646218.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800188|ref|YP_003033189.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN
           1435]
 gi|254365779|ref|ZP_04981824.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase
           chain J) [Mycobacterium tuberculosis str. Haarlem]
 gi|254552244|ref|ZP_05142691.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260188195|ref|ZP_05765669.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis CPHL_A]
 gi|260202301|ref|ZP_05769792.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T46]
 gi|260206493|ref|ZP_05773984.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis K85]
 gi|289444719|ref|ZP_06434463.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           T46]
 gi|289448834|ref|ZP_06438578.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555427|ref|ZP_06444637.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN
           605]
 gi|289575866|ref|ZP_06456093.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           K85]
 gi|289746963|ref|ZP_06506341.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           02_1987]
 gi|289751832|ref|ZP_06511210.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           T92]
 gi|289755273|ref|ZP_06514651.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054]
 gi|289759284|ref|ZP_06518662.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85]
 gi|289763337|ref|ZP_06522715.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase
           chain J) [Mycobacterium tuberculosis GM 1503]
 gi|294995505|ref|ZP_06801196.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 210]
 gi|297635797|ref|ZP_06953577.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis KZN 4207]
 gi|297732794|ref|ZP_06961912.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis KZN R506]
 gi|298526628|ref|ZP_07014037.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A]
 gi|306777471|ref|ZP_07415808.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu001]
 gi|306782196|ref|ZP_07420533.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu002]
 gi|306786017|ref|ZP_07424339.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu003]
 gi|306790382|ref|ZP_07428704.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu004]
 gi|306794907|ref|ZP_07433209.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu005]
 gi|306799107|ref|ZP_07437409.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu006]
 gi|306804950|ref|ZP_07441618.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu008]
 gi|306809139|ref|ZP_07445807.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu007]
 gi|306969241|ref|ZP_07481902.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu009]
 gi|306973588|ref|ZP_07486249.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu010]
 gi|307085900|ref|ZP_07495013.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu012]
 gi|313660127|ref|ZP_07817007.1| NADH:ubiquinone oxidoreductase subunit J [Mycobacterium
           tuberculosis KZN V2475]
 gi|1781214|emb|CAB06285.1| PROBABLE NADH DEHYDROGENASE I (CHAIN J) NUOJ (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN J) [Mycobacterium tuberculosis
           H37Rv]
 gi|13883052|gb|AAK47581.1| NADH dehydrogenase I, J subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|31619926|emb|CAD95270.1| PROBABLE NADH DEHYDROGENASE I (CHAIN J) NUOJ (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN J) [Mycobacterium bovis AF2122/97]
 gi|121494685|emb|CAL73166.1| Probable NADH dehydrogenase I (chain J) nuoJ [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|134151292|gb|EBA43337.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase
           chain J) [Mycobacterium tuberculosis str. Haarlem]
 gi|148507161|gb|ABQ74970.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Ra]
 gi|148722875|gb|ABR07500.1| NADH dehydrogenase I chain J nuoJ (NADH-ubiquinone oxidoreductase
           chain J) [Mycobacterium tuberculosis F11]
 gi|224774644|dbj|BAH27450.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321691|gb|ACT26294.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN
           1435]
 gi|289417638|gb|EFD14878.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           T46]
 gi|289421792|gb|EFD18993.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440059|gb|EFD22552.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN
           605]
 gi|289540297|gb|EFD44875.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           K85]
 gi|289687491|gb|EFD54979.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           02_1987]
 gi|289692419|gb|EFD59848.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           T92]
 gi|289695860|gb|EFD63289.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054]
 gi|289710843|gb|EFD74859.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase
           chain J) [Mycobacterium tuberculosis GM 1503]
 gi|289714848|gb|EFD78860.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85]
 gi|298496422|gb|EFI31716.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A]
 gi|308214183|gb|EFO73582.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu001]
 gi|308324957|gb|EFP13808.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu002]
 gi|308329374|gb|EFP18225.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu003]
 gi|308333203|gb|EFP22054.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu004]
 gi|308336693|gb|EFP25544.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu005]
 gi|308340534|gb|EFP29385.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu006]
 gi|308344473|gb|EFP33324.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu007]
 gi|308348469|gb|EFP37320.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu008]
 gi|308353099|gb|EFP41950.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu009]
 gi|308357072|gb|EFP45923.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu010]
 gi|308364635|gb|EFP53486.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           SUMu012]
 gi|323718243|gb|EGB27423.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           CDC1551A]
 gi|328459925|gb|AEB05348.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN
           4207]
          Length = 262

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++ S +A++ +  VV   N +YS   L    +  A  ++   A F+ ++ +VV
Sbjct: 15  TGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVV 74

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   +  +  +   +++ ++   V +     
Sbjct: 75  YTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAG 134

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             +     NVE +  +++++Y +  E++  +L+ + +GA+VL  R R   +R+   ++L 
Sbjct: 135 LTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER--FERRKTQRELS 192

Query: 182 SNP 184
              
Sbjct: 193 QER 195


>gi|257852698|gb|ACV71361.1| NADH dehydrogenase subunit 6 [Hymenanthera alpina]
          Length = 178

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVPFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174


>gi|133900408|gb|ABO41370.1| NADH dehydrogenase subunit 6 [Carpotroche longifolia]
 gi|133900446|gb|ABO41389.1| NADH dehydrogenase subunit 6 [Erythrospermum phytolaccoides]
          Length = 181

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179


>gi|257852668|gb|ACV71346.1| NADH dehydrogenase subunit 6 [Heywoodia lucens]
          Length = 180

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNAIDF 179


>gi|163854294|ref|YP_001633640.1| NADH dehydrogenase subunit 6 [Negombata magnifica]
 gi|163639449|emb|CAM06605.1| NADH dehydrogenase subunit 6 [Negombata magnifica]
          Length = 195

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 4/181 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    IIS  +V++  N ++SV  LI +F +A  LF+ L  +F+A+I L+VYVGA+ + 
Sbjct: 7   VFCMFLIISGIMVISALNSVHSVLWLIVSFTSAVVLFIFLEVDFIALIFLIVYVGAIAIL 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRLV 125
           FLF+IMML++                F IG++    ++   ++    ++   +      +
Sbjct: 67  FLFVIMMLNLTDLRGLLDMSNYMPVGFIIGVVVFFEVLLFFSWGFGDLLEGIDYFRWDFL 126

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
            K +N++ +G++LYT YAY   ++ FILL++MIGAIVL    R  IK+Q+   Q+    D
Sbjct: 127 EKISNIQVLGELLYTNYAYLFILASFILLVAMIGAIVLTFSERSQIKKQESFIQISRELD 186

Query: 186 N 186
            
Sbjct: 187 E 187


>gi|257852572|gb|ACV71298.1| NADH dehydrogenase subunit 6 [Pangium edule]
          Length = 181

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            +  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESN 183
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQDI ++   +
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAID 178


>gi|257852658|gb|ACV71341.1| NADH dehydrogenase subunit 6 [Medusagyne oppositifolia]
          Length = 178

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|166895624|ref|YP_001661418.1| NADH dehydrogenase subunit 6 [Cycas taitungensis]
 gi|166706956|dbj|BAF98420.1| NADH dehydrogenase subunit 6 [Cycas taitungensis]
          Length = 201

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++   +VV   NP++ V   I  F N +GL +L G +  AMI+ VV++GA
Sbjct: 1   MILSVSSSPALVPGLMVVRAENPVHPVSFPIPVFRNTSGLLILSGPDLSAMISPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V F  ++MML+I I     +  R    S  IG IL  E+ +   N  + S    +   
Sbjct: 61  IAVLFSSVVMMLNIQIAEIHEKVSRYSPVSGLIGPILRWEMFLILDNDHIPSLPTYIGTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     +    N E +G +L+T Y+    +S  + L++MIGAIVL +     +KRQ
Sbjct: 121 SLRYTVHAGEIQSWTNSETLGNLLHTYYSVRFLVSSPVPLVAMIGAIVLTMHRTTKVKRQ 180

Query: 175 DISKQLESNPDNSI 188
           D+ ++   +   +I
Sbjct: 181 DVFRRNAIDSRRTI 194


>gi|133900480|gb|ABO41406.1| NADH dehydrogenase subunit 6 [Kiggelaria africana]
          Length = 181

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            +  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179


>gi|78224536|ref|YP_386283.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter
           metallireducens GS-15]
 gi|78195791|gb|ABB33558.1| NADH dehydrogenase subunit J [Geobacter metallireducens GS-15]
          Length = 167

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 1/166 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++ FF + + +A+++S LV+T +NPI S  SLI  F   A L++ L A F+A I ++VY
Sbjct: 1   METFFFMIVAAVAVLASILVITCKNPINSALSLILTFFCLATLYVTLDAPFMAAIQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121
            GA++V  +F+IM+L++  E           GS        +L    +   +   +G + 
Sbjct: 61  AGAIMVLIVFVIMLLNVRTESGRRSSHSVLFGSLIGLFSLFQLFYLFNRSSLTGQKGAID 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           S L+ K  + E IGK LYT +  P E++  +LL+++IGA+VL  + 
Sbjct: 121 SALINKVGHTELIGKALYTDFLLPFEVTSILLLVAIIGAVVLTKKK 166


>gi|326902622|gb|EGE49555.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
           W-148]
          Length = 262

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++ S +A++ +  VV   N +YS   L    +  A  ++   A F+ ++ +VV
Sbjct: 15  TGEAVMFWVLSALALLGAVGVVLAINAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVV 74

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   +  +  +   +++ ++   V +     
Sbjct: 75  YTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAG 134

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             +     NVE +  +++++Y +  E++  +L+ + +GA+VL  R R   +R+   ++L 
Sbjct: 135 LTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER--FERRKTQRELS 192

Query: 182 SNP 184
              
Sbjct: 193 QER 195


>gi|257852676|gb|ACV71350.1| NADH dehydrogenase subunit 6 [Froesia diffusa]
          Length = 178

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 11/178 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F   +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   +  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDFK 178


>gi|133900540|gb|ABO41436.1| NADH dehydrogenase subunit 6 [Quiina pteridophylla]
          Length = 179

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F   +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|307152385|ref|YP_003887769.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 7822]
 gi|306982613|gb|ADN14494.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 7822]
          Length = 204

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 98/196 (50%), Gaps = 4/196 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + +   I ++  VV + N +YS F L   F++ AG+++LL A+FVA   +++Y
Sbjct: 7   VQIVSFLILAGFLITAALGVVLLSNIVYSAFLLAGVFLSIAGIYILLNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +       R ++     G++   L       ++ +     S
Sbjct: 67  VGAVNVLILFAIMLVNKQEDFK--TVPRRWIRQIATGLVCLGLFALLGTMILITPWSINS 124

Query: 123 RLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDISKQL 180
                  N    IGK  ++ +  P E++  +LL++M+GAI+L  R    ++K  +     
Sbjct: 125 TSPAVVENTLVEIGKHFFSDFLLPFELASILLLMAMVGAIILARRDFIPELKSSEPGTTA 184

Query: 181 ESNPDNSIVMVKVKSG 196
            + P+    ++ ++SG
Sbjct: 185 LTLPERPRELISLESG 200


>gi|56791580|gb|AAW30328.1| NADH dehydrogenase subunit 6 [Eschscholzia californica]
          Length = 178

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+ V 
Sbjct: 1   VLSSPALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVS 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124
           FLF++MM  I I        R    S  IG IL  E+     N  +       +      
Sbjct: 61  FLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120

Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                 V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+
Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYSVRFLVPSLILLVAMIGAIVLTMHRTTKVKRQDV 178


>gi|88809900|ref|ZP_01125406.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7805]
 gi|88786284|gb|EAR17445.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7805]
          Length = 199

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F + S + ++ +  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   STQLISFLVLSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++A        +     G + A L V  +  ++ +   E 
Sbjct: 66  YVGAVNVLILFAIMLVNKREDLAP--IPGIAVRRLLSGGVCAGLFVLLTRVVLTTPWAEG 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
              + +G  +  IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 PEPIGEGATIR-IGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 167


>gi|133900554|gb|ABO41443.1| NADH dehydrogenase subunit 6 [Scyphostegia borneensis]
          Length = 179

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG I   E+     N  +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNA 174


>gi|581746|emb|CAA44376.1| NDHG [Synechocystis sp. PCC 6803]
          Length = 202

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 90/163 (55%), Gaps = 2/163 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + +F+ I ++  VV + N +YS F L   F++ +G+++LL A+FVA   ++VY
Sbjct: 7   VQYISFLILAFLVIGAALGVVLLSNIVYSAFLLGGVFLSISGIYILLNADFVAAAQVLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   + ++   +  +L +    ++   +    S  ++ +      
Sbjct: 67  VGAVSVLILFAIMLVNKREDFSKIPGR--WLRNVSTALVCTGIFALLSTMVLITPWQINE 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
              F  N +  IGK  ++ Y  P E++  +LL++M+GAI+L  
Sbjct: 125 TGPFVENTLVTIGKHFFSDYLLPFELASVLLLMAMVGAIILAR 167


>gi|148240625|ref|YP_001226012.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7803]
 gi|147849164|emb|CAK24715.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 7803]
          Length = 199

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F + S + ++ +  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   STQLISFLVLSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++A        +     G + A L V  +  ++ +   + 
Sbjct: 66  YVGAVNVLILFAIMLVNKREDLAP--IPGIAVRRLLSGGVCAGLFVLLTRVVLTTPWAQG 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
              + +G  +  IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 PEPIGEGATIR-IGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 167


>gi|133900484|gb|ABO41408.1| NADH dehydrogenase subunit 6 [Koilodepas bantamense]
          Length = 181

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDLFRRNAIDF 179


>gi|289065180|ref|YP_003434232.1| NADH dehydrogenase subunit 6 [Chattonella marina]
 gi|288871892|dbj|BAI70579.1| NADH dehydrogenase subunit 6 [Chattonella marina]
          Length = 203

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/201 (35%), Positives = 108/201 (53%), Gaps = 11/201 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + LFFYLFS + +IS+ +V+TV NP++SV  LI  FV +A + LLL  EF++++ +++YV
Sbjct: 3   ELLFFYLFSGLVLISATMVITVSNPVHSVLFLILGFVGSAAILLLLKVEFLSLMFVIIYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA------ 117
           GA+ V FLF++MMLDI ++ +        LG+     L  +          FS+      
Sbjct: 63  GAIAVLFLFVVMMLDIKLKKSGASLGYTALGAISGLFLFFQFFYFIEKISPFSSSFLLEE 122

Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  +    + K  N+E +G+ LYT Y +   I G +LL+ MIG IVL L      K
Sbjct: 123 LFSPYYFDWIDTIDKLTNMECLGQFLYTYYFFHFLIGGILLLVGMIGGIVLTLHVNYKSK 182

Query: 173 RQDISKQLESNPDNSIVMVKV 193
            Q I KQL     N+I +  V
Sbjct: 183 NQLICKQLSRQLKNAIFLTTV 203


>gi|118617955|ref|YP_906287.1| NADH dehydrogenase subunit J [Mycobacterium ulcerans Agy99]
 gi|183981489|ref|YP_001849780.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone
           oxidoreductase chain J) [Mycobacterium marinum M]
 gi|118570065|gb|ABL04816.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone
           oxidoreductase chain J) [Mycobacterium ulcerans Agy99]
 gi|183174815|gb|ACC39925.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone
           oxidoreductase chain J) [Mycobacterium marinum M]
          Length = 262

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 92/183 (50%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A++ +  VV   N +YS   L    +  A  +++  A F+ ++ +VV
Sbjct: 19  TGEAVTFWILGALALVGALGVVMAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVV 78

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   +  +  +   +++ A+   V +     
Sbjct: 79  YTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFAG 138

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NVE +  +++++Y +  E++  +L+ + IGA+VL  R R   +R+   ++L 
Sbjct: 139 LTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRER--FERRKSQRELS 196

Query: 182 SNP 184
              
Sbjct: 197 QER 199


>gi|133900404|gb|ABO41368.1| NADH dehydrogenase subunit 6 [Calophyllum soulattri]
          Length = 178

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAI+L +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIILTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852600|gb|ACV71312.1| NADH dehydrogenase subunit 6 [Codiaeum variegatum]
          Length = 180

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDLFRRNAIDF 179


>gi|257852672|gb|ACV71348.1| NADH dehydrogenase subunit 6 [Phyllanthus epiphyllanthus]
          Length = 170

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I I     
Sbjct: 1   NPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHE 60

Query: 87  RKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFKGNNVENIG 135
              R    S  IG IL  E+     N  +     + +            V    N+E +G
Sbjct: 61  EVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLG 120

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
            +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 NLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAVDF 169


>gi|257852574|gb|ACV71299.1| NADH dehydrogenase subunit 6 [Bonnetia sessilis]
          Length = 178

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHESVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLQYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     + G ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFFLQGLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177


>gi|332526756|ref|ZP_08402858.1| NADH-ubiquinone oxidoreductase, subunit J [Rubrivivax
           benzoatilyticus JA2]
 gi|332111159|gb|EGJ11191.1| NADH-ubiquinone oxidoreductase, subunit J [Rubrivivax
           benzoatilyticus JA2]
          Length = 210

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 116/198 (58%), Gaps = 1/198 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +  FYLFS + + ++  V+T R+ ++ V  L+ AF NAA +++LL AEF+A++ ++
Sbjct: 1   MNTTTALFYLFSAVLLFAALRVITARSTVHGVLYLVLAFFNAACIWMLLQAEFLAIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGAV+V FLF++MMLDI+ E       + F L      ++A E+ +        +   
Sbjct: 61  VYVGAVMVLFLFVVMMLDINSESVRTGFWKHFPLAGMVGAVIALEMSLVLLRGFQPAQAP 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
           EL+    +  N   +G  LYT Y YPL+++  +LL++++ AI L LRHR+D +R D +  
Sbjct: 121 ELTAQALEMGNTRLLGIELYTHYLYPLQLAAVLLLVAIVAAIALTLRHRKDSRRVDPAMA 180

Query: 180 LESNPDNSIVMVKVKSGK 197
           +     + + +VKV + K
Sbjct: 181 VRVKRADRVRLVKVPTVK 198


>gi|257852732|gb|ACV71378.1| NADH dehydrogenase subunit 6 [Cucumis sativus]
          Length = 180

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 13/176 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLE 181
             N+E +G +LYT Y+    +S  ILL++MIGAIVL +       +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHSAVKRQDVFRRNA 176


>gi|33860718|ref|NP_892279.1| NADH dehydrogenase subunit J [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633660|emb|CAE18617.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 199

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 10/187 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F + S + II +  V+ + N +YS F L   F++ AGL+LLL A FVA   ++V
Sbjct: 6   TTQIICFSVLSLVVIIGALGVILLENIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           YVGAV V  +F IM+++   +   +A  + +R    S  + +L+  + V  SN    +  
Sbjct: 66  YVGAVNVLIIFAIMLVNKKEDLKAIANIKSRRIISTSICLTLLSLLIRVDLSNTWGLAEP 125

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                      +   IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DIS 
Sbjct: 126 ----NASIGEESTVRIGEHLFSDYLLPFEVASVLLLMAMIGAIVLA---RRDVMNEDIST 178

Query: 179 QLESNPD 185
            L  + +
Sbjct: 179 GLPVDQE 185


>gi|111022881|ref|YP_705853.1| NADH dehydrogenase subunit J [Rhodococcus jostii RHA1]
 gi|110822411|gb|ABG97695.1| probable NADH dehydrogenase subunit J [Rhodococcus jostii RHA1]
          Length = 269

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 1/188 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F++ + +A+I +  VV+    +YS   L    +  A  ++  GA F+ ++ +VV
Sbjct: 17  TGEGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIAQGALFLGVVQIVV 76

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   +     L   L++         +    
Sbjct: 77  YTGAVMMLFLFVLMLIGVDSSESLVENLRGQRVAAIAAGLGFGLLLIGGIGSASVSAFTG 136

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQL 180
                   NVE + ++++ +Y +  E++G +L+ + IGA+VL  R R    K Q    Q 
Sbjct: 137 LDQANAAGNVEGLAELVFVRYVWAFELTGALLITATIGAMVLAHRERFERRKDQRELSQD 196

Query: 181 ESNPDNSI 188
                  +
Sbjct: 197 RVREGARV 204


>gi|284106854|ref|ZP_06386297.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830033|gb|EFC34309.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 170

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 101/170 (59%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  F  F+ + ++++ LVV +RNPIYS  SL+  F + AGL++ L AEF+A I ++VY
Sbjct: 1   MATFVFLYFAAVILVAASLVVVLRNPIYSALSLLVMFFHVAGLYVTLHAEFLAAIQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V +LF++M+L++  E    ++    L    + +  A L+  +  F V + +    
Sbjct: 61  AGAILVLYLFVVMLLNVKREERFNQQGTVALFLGLVLLTEAVLLAVSRGFNVATPDPGPE 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  N E+IG+VLY+ Y +P EI+  ILL++MIGA++L  +   + K
Sbjct: 121 GAAKAVGNTESIGEVLYSTYLFPFEIASLILLVAMIGAVILSKKGIMESK 170


>gi|257852654|gb|ACV71339.1| NADH dehydrogenase subunit 6 [Lophira lanceolata]
 gi|257852656|gb|ACV71340.1| NADH dehydrogenase subunit 6 [Luxemburgia octandra]
          Length = 178

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|133900514|gb|ABO41423.1| NADH dehydrogenase subunit 6 [Ochna multiflora]
          Length = 179

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRDISGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|116073962|ref|ZP_01471224.1| NADH dehydrogenase subunit J [Synechococcus sp. RS9916]
 gi|116069267|gb|EAU75019.1| NADH dehydrogenase subunit J [Synechococcus sp. RS9916]
          Length = 200

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F + + +  I +  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   STQLICFLVLASVVAIGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++A  +  +        G + A L        + +     
Sbjct: 66  YVGAVNVLILFAIMLVNKREDLAPIKGLQT--RRLISGGVCAGLFALLVRVALTTPWAVP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                  +    IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPAAVGEDATVRIGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 168


>gi|133900562|gb|ABO41447.1| NADH dehydrogenase subunit 6 [Trichadenia zeylanica]
          Length = 180

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            +  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179


>gi|257852678|gb|ACV71351.1| NADH dehydrogenase subunit 6 [Touroulia guianensis]
          Length = 178

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F   +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852666|gb|ACV71345.1| NADH dehydrogenase subunit 6 [Croizatia brevipetiolata]
          Length = 178

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV  LI  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFLILVFCDTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQGNTTSLRYTVYAGKVGS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +   + +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKKVKRQDIFRRNA 174


>gi|326329619|ref|ZP_08195941.1| NADH dehydrogenase I, J subunit [Nocardioidaceae bacterium Broad-1]
 gi|325952615|gb|EGD44633.1| NADH dehydrogenase I, J subunit [Nocardioidaceae bacterium Broad-1]
          Length = 238

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 4/167 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + + +I++  ++  R P+++  SL    V  A ++  L A F+  + +VVY GA++
Sbjct: 3   FVILASVTVIAALGLLFARKPVHAALSLAVVMVGLAMIYATLEAPFLFAVQIVVYTGAIL 62

Query: 68  VFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + FLF+IM++ +D    + E    +  L +     L A LI       + +  G  S   
Sbjct: 63  MLFLFVIMLVGVDTSDTLKETIAGQKVLAALLGIGLGATLIAGVGQASIATMRGLSS--A 120

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +G NV+ +  +L+++Y    E +  +L+ + IGA+VL  R R D K
Sbjct: 121 NEGGNVQRLADLLFSRYVIAFEATSALLITAAIGAMVLAHRERIDPK 167


>gi|240169661|ref|ZP_04748320.1| NADH dehydrogenase subunit J [Mycobacterium kansasii ATCC 12478]
          Length = 264

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 88/183 (48%), Gaps = 2/183 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+I +  VV   N +YS   L    +  A  +++  A F+ ++ +VV
Sbjct: 23  TGEAVTFWILGALALIGALAVVLAVNAVYSAMFLAMTMIILAVFYMVQDALFLGVVQVVV 82

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   +     +   +++      V +     
Sbjct: 83  YTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVGTGIGFGILLVGGIGNVATGGFAG 142

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                   NVE +  +++ +Y +  E++  +L+ + IGA+VL  R R   +R+   ++L 
Sbjct: 143 LTAANANGNVEGLAALIFFRYLWAFELTSALLITAAIGAMVLAHRER--FERRKTQRELS 200

Query: 182 SNP 184
              
Sbjct: 201 EER 203


>gi|257852578|gb|ACV71301.1| NADH dehydrogenase subunit 6 [Anthodiscus amazonicus]
          Length = 178

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V    NP++SV   I  F++ +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAPNPVHSVLFSILVFLDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852620|gb|ACV71322.1| NADH dehydrogenase subunit 6 [Ricinus communis]
          Length = 180

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDLFRRNAIDF 179


>gi|133900378|gb|ABO41355.1| NADH dehydrogenase subunit 6 [Acharia tragodes]
          Length = 181

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            +  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKIRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTSHSAVKRQDIFRRNAIDF 179


>gi|257852618|gb|ACV71321.1| NADH dehydrogenase subunit 6 [Omphalea diandra]
          Length = 180

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 13/176 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNMASLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +   R   +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHSNRHGAVKRQDVFRRNA 176


>gi|266679|sp|Q00243|NU6C_PLEBO RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName:
           Full=NAD(P)H dehydrogenase I, chain 6; AltName:
           Full=NDH-1, chain 6
 gi|441181|dbj|BAA00816.1| NADH-ubiquinone oxidoreductase chain 6 homolog [Leptolyngbya
           boryana IAM M-101]
          Length = 199

 Score =  134 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M I S+  VV + N +YS F L   F++ AGL+LLL A+FVA   +++Y
Sbjct: 7   VQIVSFAILAAMMIGSAIGVVLLENVVYSAFLLGGVFISIAGLYLLLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++         K      +     L    I    + MV +    +S
Sbjct: 67  VGAVNVLILFAIMLVNKREAFQPIAKSWIRRAA---TALVCAGIFALLSAMVLTTPWAIS 123

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             V   +++  IG   +T +  P E++  +LL++++GAIVL  R 
Sbjct: 124 TAVPIESSIITIGLHFFTDFLLPFELASILLLMALVGAIVLARRE 168


>gi|133900522|gb|ABO41427.1| NADH dehydrogenase subunit 6 [Pera bicolor]
          Length = 183

 Score =  134 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 88/182 (48%), Gaps = 16/182 (8%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-----RRDIKRQDISKQLES 182
             N+E +G +LYT Y     +   ILL++MIGAIVL +       R  +KRQDI ++   
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTPLNRNAVKRQDIFRRNAI 180

Query: 183 NP 184
           + 
Sbjct: 181 DF 182


>gi|107736213|ref|YP_626509.1| NADH dehydrogenase subunit 6 [Briareum asbestinum]
 gi|100913613|gb|ABF69700.1| NADH dehydrogenase subunit 6 [Briareum asbestinum]
          Length = 185

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 17/187 (9%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4   LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IM++    +V                 +   +I      +  S +   + ++ 
Sbjct: 64  AILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYGLLTNSPKYISNPVIG 116

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR----------DIKRQDI 176
              N+  IG  LYT Y   + I+  +LL++MIGAI+L  +                RQD+
Sbjct: 117 SKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAQQPNTPSLYNSHGVPSRSRQDL 176

Query: 177 SKQLESN 183
             Q+   
Sbjct: 177 FLQISRE 183


>gi|257852626|gb|ACV71325.1| NADH dehydrogenase subunit 6 [Tetrorchidium cf. macrophyllum Bell
           et al. 93-204]
          Length = 180

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTASLRYKVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHSPTHGAVKRQDLFRRNAIDF 179


>gi|257852724|gb|ACV71374.1| NADH dehydrogenase subunit 6 [Afrostyrax sp. Cheek 5007]
          Length = 180

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y+    +   ILL++MIGAIVL +       +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179


>gi|134095022|ref|YP_001100097.1| NADH dehydrogenase I subunit J [Herminiimonas arsenicoxydans]
 gi|133738925|emb|CAL61972.1| NADH-quinone oxidoreductase subunit J (NADH dehydrogenase I subunit
           J) (NDH-1 subunit J) [Herminiimonas arsenicoxydans]
          Length = 213

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 109/196 (55%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY+FS + + ++  V+T  NP+++   L+ +F  AA L++LL AEF++++ ++
Sbjct: 1   MEFTTVLFYVFSAILVFAAIRVITDSNPVHAALFLVLSFCTAAALWMLLKAEFLSIVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MM+DI +             +  IG++    +        + A   
Sbjct: 61  VYVGAVMVLFLFVVMMVDIKLSNVREGFWGYLPLAATIGVVIVLEMAAVLFRGFWKAHTH 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           +        N + +GK++YTQY Y  E++  +LLL+M+ A+ L +R R+D K       +
Sbjct: 121 VPEAAAMIGNTKELGKLIYTQYLYAFELAALLLLLAMVAAVALTMRKRKDTKYFAPGDAV 180

Query: 181 ESNPDNSIVMVKVKSG 196
           +    + + +VK+K+ 
Sbjct: 181 KVKSGDRLRVVKMKAE 196


>gi|325954443|ref|YP_004238103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Weeksella
           virosa DSM 16922]
 gi|323437061|gb|ADX67525.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Weeksella
           virosa DSM 16922]
          Length = 171

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 98/169 (57%), Gaps = 1/169 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ + FY+ + + ++S+ L+V  RNPI+S+  LI  F   +G ++LL A+F+A++ ++
Sbjct: 1   MTIEEILFYVLAGLTVLSALLMVFSRNPIHSILYLIITFFCISGHYILLNAQFLAVVNII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V FLF++M+++++ E            +  + +L   L V        + + +
Sbjct: 61  VYAGAIMVLFLFVVMLMNLNSEKKSFGTPIKITVASLVSLLFIILTVGIITENG-TPQTQ 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +     +   +EN+G VLY++Y  P E+S  + + +MIGA++L  + + 
Sbjct: 120 VEMAKGEIGLIENLGSVLYSEYVLPFELSSILFISAMIGAVILSKKDKE 168


>gi|254424929|ref|ZP_05038647.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Synechococcus sp. PCC 7335]
 gi|196192418|gb|EDX87382.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Synechococcus sp. PCC 7335]
          Length = 197

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F L   + ++ +  VV + + +YS F L   F++ AG ++LL A FVA   +++Y
Sbjct: 5   VQVVSFGLLGLIMVVGALGVVLLSSIVYSAFLLGLVFISIAGFYILLNAGFVAAAQVLIY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +  E   K  ++G    G + A L    S  ++       S
Sbjct: 65  VGAVNVLILFGIMLVNKQEDFIE--VKNAWIGKAATGAVCAGLFGLLSTMVLSHPWAISS 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                   +E IG+  ++ Y  P E++  +LL++++GAI+L  R 
Sbjct: 123 APAAGDKAIEVIGQHFFSDYLLPFELASVLLLIALVGAIILARRE 167


>gi|313672287|ref|YP_004050398.1| NADH dehydrogenase subunit j [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939043|gb|ADR18235.1| NADH dehydrogenase subunit J [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 166

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L FY+ +F+AIISS  ++T  NP++S   ++  F + AG+F+ L AEF+A I ++VY
Sbjct: 1   MEQLGFYILAFVAIISSLFMITRENPVHSALWMLLTFFSVAGIFVQLNAEFIAAIQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V +LF++M+L+   +       R  LG     ++  ++++   +  V    G+ +
Sbjct: 61  AGAILVLYLFVVMLLNPKSKGFIKIPFRYALGIVASFVVLIQILITLQSANVIGRSGQYT 120

Query: 123 RLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             ++ K  NV+  G  L+  Y  P EI   +LL++MIGAIVL  +
Sbjct: 121 AEIYEKYGNVKIFGYELFNNYLVPFEIVSVMLLVAMIGAIVLAKK 165


>gi|57239208|ref|YP_180344.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579166|ref|YP_197378.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617219|ref|YP_196418.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Gardel]
 gi|57161287|emb|CAH58208.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416831|emb|CAI27944.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Gardel]
 gi|58417792|emb|CAI26996.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 200

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 77/200 (38%), Positives = 120/200 (60%), Gaps = 9/200 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF+ F+ + I+SS  V+ V NP+YSV  LI  F  ++ LF+LLGAE +AM+ ++VY
Sbjct: 1   MIYFFFHFFAVLVILSSIAVIYVSNPVYSVLFLILTFFMSSTLFILLGAELIAMLVIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLDI+      R K GF   F IG+++  ++     F++  +     
Sbjct: 61  VGAVAVLFLFVVMMLDINYS----RFKHGFTKYFVIGLISGMILFVNMVFIIKHSATADL 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQ 179
           ++      +NV  IG ++YT+Y Y   +SG +LL+S+IG++VL LR +  +I+RQ    Q
Sbjct: 117 VTESKPYVSNVMAIGNLIYTKYMYIFHLSGVLLLISIIGSLVLTLRDKGNNIRRQSPDIQ 176

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  +P   +  V VK   G+
Sbjct: 177 ISRSP--FVKYVDVKVRGGV 194


>gi|284794760|ref|YP_003412113.1| NADH dehydrogenase subunit 6 [Phaeoceros laevis]
 gi|254596080|gb|ACT75321.1| NADH dehydrogenase subunit 6 [Phaeoceros laevis]
          Length = 201

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 11/198 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + S +A++S       +N ++ V  LI  F N +GL +LLG +  AMI LVVY GA
Sbjct: 2   ILFSVPSSIALVSGVTATRAKNLVHFVLFLIPVFRNTSGLLVLLGLDSFAMIFLVVYAGA 61

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +      + M  +I I E+ E   +   +G     IL  E+     N  +     +LS  
Sbjct: 62  IAASSPSVAMTSNIKIAEIHENVLRYLPVGGIIGLILLLEIFFIVDNDYIPILPTKLSTA 121

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     +    N+E +G +LYT Y      S FILL++MIGA VL +     +KRQ
Sbjct: 122 YLTYTVYAGKIQSWTNLETLGNLLYTTYFTLFLFSSFILLVAMIGATVLTMHKTTRVKRQ 181

Query: 175 DISKQLESNPDNSIVMVK 192
           D+ +Q   +  N+I  ++
Sbjct: 182 DVFRQNARDFQNTIKKIR 199


>gi|133900406|gb|ABO41369.1| NADH dehydrogenase subunit 6 [Carallia brachiata]
          Length = 179

 Score =  133 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTYMRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|257852742|gb|ACV71383.1| NADH dehydrogenase subunit 6 [Medusandra richardsiana]
          Length = 180

 Score =  133 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y+    +S  ILL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNAIDF 179


>gi|257852722|gb|ACV71373.1| NADH dehydrogenase subunit 6 [Ruptiliocarpon caracolito]
          Length = 173

 Score =  133 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
             +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I I  
Sbjct: 1   RAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAE 60

Query: 84  AEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGELSRL----------VFKGNNVE 132
                 R    S  IG++   E+     N  +     + +            V    N+E
Sbjct: 61  IHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLE 120

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
            +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 TLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 172


>gi|133900452|gb|ABO41392.1| NADH dehydrogenase subunit 6 [Euphronia guianensis]
          Length = 181

 Score =  133 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179


>gi|284929387|ref|YP_003421909.1| NADH dehydrogenase subunit J [cyanobacterium UCYN-A]
 gi|284809831|gb|ADB95528.1| NADH dehydrogenase subunit J [cyanobacterium UCYN-A]
          Length = 207

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 5/166 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + IIS+  VV + N +YS F L   F+  +GL++LL A+F+A   +++Y
Sbjct: 7   VQLVSFAILAGLVIISALGVVLLSNIVYSAFLLGGVFIGISGLYILLNADFIAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF IM+++   + +   K      +    ++    I    + +V+     + 
Sbjct: 67  VGAINVLILFAIMLVNKKGDYSNSSKS---WINRVATMMVCGGIFALLSTVVYMTPWNVE 123

Query: 123 RLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +V +   + V  IG+ L++ Y  P E++  +LL++M+GAIVL  R
Sbjct: 124 AVVPEVLESTVIKIGRHLFSDYLLPFELASVLLLIAMVGAIVLARR 169


>gi|270158105|ref|ZP_06186762.1| NADH-quinone oxidoreductase J subunit [Legionella longbeachae
           D-4968]
 gi|289163630|ref|YP_003453768.1| NADH-quinone oxidoreductase chain J [Legionella longbeachae NSW150]
 gi|269990130|gb|EEZ96384.1| NADH-quinone oxidoreductase J subunit [Legionella longbeachae
           D-4968]
 gi|288856803|emb|CBJ10614.1| NADH-quinone oxidoreductase chain J [Legionella longbeachae NSW150]
          Length = 214

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 115/208 (55%), Gaps = 15/208 (7%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FY+F+ +AI ++F+V+   NP+ SV  L+  F  +A L++L  AEF+A+I ++VYVG
Sbjct: 7   QVIFYIFAALAIGAAFMVIIQDNPVRSVLFLVLTFFASAALWILAEAEFLALILILVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV+  FLF++MML+ID+E+ +   KR       +  L   L++ +     F    E+   
Sbjct: 67  AVMTLFLFVVMMLNIDVEIMKSHYKRYLPFGLILVALFIGLLMVSIPSGTFKKNVEVKGY 126

Query: 125 VFKG---------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                              +N E +G VLYT Y    EI+  +LL+++I AI L+ R  R
Sbjct: 127 AINSQLLEVKQNGAEQQPLSNTEALGMVLYTDYLLAFEIAAALLLIAIISAITLVHRGPR 186

Query: 170 DIKRQDISKQLESNPDNSIVMVKVKSGK 197
             KRQ++ +Q+ ++ +  + ++ +K+ K
Sbjct: 187 KSKRQNVKQQILTHKNQRVELINMKAEK 214


>gi|117927485|ref|YP_872036.1| NADH dehydrogenase subunit J [Acidothermus cellulolyticus 11B]
 gi|117647948|gb|ABK52050.1| NADH dehydrogenase subunit J [Acidothermus cellulolyticus 11B]
          Length = 275

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 91/206 (44%), Gaps = 12/206 (5%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++   +A++++  VV  R+ +++   L    +  A  +    A  +A + ++VY 
Sbjct: 15  EAALFWVLGPIAVLAALGVVFARHTVHAALLLGGVMLIFAIFYAAQDAPLIAFVQIIVYT 74

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI----------GILAAELIVCASNFM 113
           GAV++ FLF++M++ +D +       RG   +               L    I  ++   
Sbjct: 75  GAVMMLFLFVLMLIGVDTKERLVETLRGQRLATVFAGIGFLLLLLAGLGNAAIGTSAGLH 134

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             +        V  G N+  + K+L+T+Y +  E++  +L+ + +GA+VL  R R  + R
Sbjct: 135 QANYPTNAVGQVQTGGNIYQVAKLLFTRYVFAFEVTSALLITAALGAMVLAHRQR--VGR 192

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           +    ++  +            G G+
Sbjct: 193 RRTQYEMMRDRFRRGAHPTPLPGPGV 218


>gi|257852696|gb|ACV71360.1| NADH dehydrogenase subunit 6 [Fusispermum laxiflorum]
          Length = 180

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 13/176 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLE 181
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQDI ++  
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNA 176


>gi|56791552|gb|AAW30314.1| NADH dehydrogenase subunit 6 [Amborella trichopoda]
          Length = 178

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A++S  +V   +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+ V FLF++
Sbjct: 2   ALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVV 61

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSR 123
           MM +I I        R    S  IG I   E+     N  +                 + 
Sbjct: 62  MMFNIQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRKTTSLRYTVYAG 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            V    N E +G +LYT Y+    +   ILL++MIGAIV  +     ++RQD+ ++ 
Sbjct: 122 KVRSWTNSETLGNLLYTYYSVWFLVPSPILLVAMIGAIVQTMHSTTKVQRQDVFRRN 178


>gi|189426178|ref|YP_001953355.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter
           lovleyi SZ]
 gi|189422437|gb|ACD96835.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter
           lovleyi SZ]
          Length = 170

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 1/168 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + S+FF L + +AI+S+ +VVT +NPI S  SL+  F   A  + +L A F+A + ++
Sbjct: 1   MDISSVFFALVTVVAIVSALMVVTCKNPINSALSLVLTFFCLATYYAMLNAPFMAAVQII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEG 119
           VY GA++V  +F IM+L+I ++  +    +  LGS   I  L    +      +      
Sbjct: 61  VYAGAIMVLIVFTIMLLNIRVDANKKGSHQIALGSVIGIATLLLSGLFLTRGKVSQPVGQ 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             S L+    + E IGKV++T +  P E++  +LL++++GA++L  R 
Sbjct: 121 ITSELINSKGHTELIGKVMFTDFLLPFEVTSILLLVAIVGAVILAKRK 168


>gi|159030036|emb|CAO90417.1| ndhG [Microcystis aeruginosa PCC 7806]
          Length = 198

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 3/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + I ++  VV + N +YS F L   F++ +GL+LLL A+FVA   +++Y
Sbjct: 7   VQIVSFGILAALVIGTALGVVLLSNIVYSAFLLGGVFISISGLYLLLNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF IM+++   + ++  K+  ++      ++   L V  S  ++ +     S
Sbjct: 67  VGAINVLILFAIMLVNKQEDFSDIPKR--WIRQASTALVCVGLFVLLSTMVLITPWSISS 124

Query: 123 RLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                  N    IGK  ++ +  P E++  +LL++M+GAI+L  R
Sbjct: 125 TSPAVVTNTLVEIGKHFFSDFLLPFELASVLLLMAMVGAIILARR 169


>gi|133900428|gb|ABO41380.1| NADH dehydrogenase subunit 6 [Denhamia celastroides]
          Length = 181

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTKRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y+    +   ILL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNAIDF 179


>gi|133900450|gb|ABO41391.1| NADH dehydrogenase subunit 6 [Euonymus alatus]
          Length = 181

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y+    +   ILL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNAIDF 179


>gi|257852686|gb|ACV71355.1| NADH dehydrogenase subunit 6 [Paradrypetes subintegrifolia]
          Length = 178

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLFLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +S  ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|164420963|ref|YP_001648530.1| NADH dehydrogenase subunit 6 [Callyspongia plicifera]
 gi|158668102|gb|ABW76564.1| NADH dehydrogenase subunit 6 [Callyspongia plicifera]
          Length = 183

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 2/178 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F++F+F AIIS F V+TV +P+ SV  LI  F++A+ LF+LL  EF+A I L+VYVGA+
Sbjct: 4   LFFIFAFGAIISGFKVITVFSPVASVLWLIMTFISASALFILLEVEFIAFIFLIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IMML++   V        F     IG++    I+      +      +  LV 
Sbjct: 64  AILFLFVIMMLNLTEMVIFSNAANYFSAGLIIGVVFLFEILTFLKGTIDGGR-MVQYLVV 122

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDISKQLESN 183
              N+E +G+VLYT Y Y   IS FILL++MIGAI+L   H  +D K QDI  Q    
Sbjct: 123 PNPNIEVLGRVLYTDYYYLFIISSFILLVAMIGAIILTHDHIIQDRKGQDIFVQTSRQ 180


>gi|3914179|sp|O63849|NU6M_SARGL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|3132794|gb|AAC16383.1| NADH dehydrogenase subunit 6 [Sarcophyton glaucum]
          Length = 185

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 17/187 (9%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4   LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IM++    ++                 +   +I    + +  S +   + ++ 
Sbjct: 64  AILFLFVIMLIQQPNKIDSQDHSHFLP-------IGLSVIFLFYSLLTNSPKYISNPVIG 116

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDI 176
              N+  IG  LYT Y   + I+  +LL++MIGAI+L                   RQD+
Sbjct: 117 SRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDL 176

Query: 177 SKQLESN 183
             Q+   
Sbjct: 177 FLQISRE 183


>gi|257852726|gb|ACV71375.1| NADH dehydrogenase subunit 6 [Hua gabonii]
          Length = 180

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y+    +   ILL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTIHRTTHGAVKRQDVFRRNAIDF 179


>gi|257852702|gb|ACV71363.1| NADH dehydrogenase subunit 6 [Brunellia acutangula]
          Length = 170

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 11/169 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  I I     
Sbjct: 1   NPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFHIQIAEIHE 60

Query: 87  RKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFKGNNVENIG 135
              R    S  +G IL  E+     N  +     + +            V    N+E +G
Sbjct: 61  EVLRYLPVSGIMGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLG 120

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
            +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 NLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 169


>gi|166368384|ref|YP_001660657.1| NADH dehydrogenase subunit J [Microcystis aeruginosa NIES-843]
 gi|166090757|dbj|BAG05465.1| NADH dehydrogenase subunit J [Microcystis aeruginosa NIES-843]
          Length = 198

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 90/165 (54%), Gaps = 3/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + I ++  VV + N +YS F L   F++ +GL+LLL A+FVA   +++Y
Sbjct: 7   VQIVSFGILAALVIGTALGVVLLSNIVYSAFLLGGVFISISGLYLLLNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF IM+++   + ++  K+  ++      ++   L V  S  ++ +     +
Sbjct: 67  VGAINVLILFAIMLVNKQEDFSDIPKR--WIRQASTALVCVGLFVLLSTMVLITPWSIST 124

Query: 123 RLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                  N    IGK  ++ +  P E++  +LL++M+GAI+L  R
Sbjct: 125 TSPAVVTNTLVEIGKHFFSDFLLPFELASVLLLMAMVGAIILARR 169


>gi|110637778|ref|YP_677985.1| NADH dehydrogenase I subunit J [Cytophaga hutchinsonii ATCC 33406]
 gi|110280459|gb|ABG58645.1| NADH dehydrogenase subunit J [Cytophaga hutchinsonii ATCC 33406]
          Length = 169

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 95/168 (56%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++ FY+ S + + S+  V+  +NP+YSV SL+  F    G  LLL A+F+A++ ++VY
Sbjct: 1   MGNILFYILSGITLCSALFVILSKNPVYSVLSLVITFCCITGHMLLLSADFLAVVNIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IMML+++   A+P K      +  +      + +            ++S
Sbjct: 61  AGAIMVLFLFVIMMLNLNDAAAQPNKPFLSKLAACVSGGLLLISLVYLLKGYQVGSIDMS 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +L     + + +GK+L+ Q+  P EI+  + L +MIGA++L  +  +D
Sbjct: 121 KLDHNFGSAQELGKILFNQFILPFEITSVLFLSAMIGAVMLGKKDLKD 168


>gi|126695516|ref|YP_001090402.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9301]
 gi|126542559|gb|ABO16801.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9301]
          Length = 199

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 103/188 (54%), Gaps = 10/188 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           +  Q + F + S + +I +  VV + + +YS F L   F++ AGL+LLL A FVA   ++
Sbjct: 5   ITTQIICFTILSLVILIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVL 64

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVA---EPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVGAV V  +F IM+++   ++    + + +R    S  + +L+  + V  +N    S+
Sbjct: 65  VYVGAVNVLIIFAIMLVNKKEDLKPINDIKSRRIISTSICLTLLSLLIRVDLTNTWSLSS 124

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
               ++      +   IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DIS
Sbjct: 125 ----TQNSIGEESTIRIGEHLFSDYLLPFEVASVLLLMAMIGAIVLA---RRDVMSKDIS 177

Query: 178 KQLESNPD 185
             L  + +
Sbjct: 178 TGLPVDQE 185


>gi|318040628|ref|ZP_07972584.1| NADH:ubiquinone oxidoreductase subunit J [Synechococcus sp. CB0101]
          Length = 199

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F + S +  I +  VV + N +YS F L   F++ AGL+LLL A FVA   ++V
Sbjct: 6   STQLICFTVLSAVVAIGALGVVLLPNIVYSAFLLGGVFLSVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++A        +     G + A L          +     
Sbjct: 66  YVGAVNVLILFAIMLVNKKEDLA--AIPGLAVRRLLSGAVCAGLFALLLRVAFTTPWATP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                       IG+ L++ Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPEPVGEEATIRIGEHLFSDYLLPFELASVLLLMAMIGAIVLARR 168


>gi|218245873|ref|YP_002371244.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 8801]
 gi|257058921|ref|YP_003136809.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 8802]
 gi|218166351|gb|ACK65088.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 8801]
 gi|256589087|gb|ACU99973.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 8802]
          Length = 206

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 1/164 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + S + I ++  VV + N +YS F L   F++ +G+++LL A+FVA   +++Y
Sbjct: 7   VQIVSFAILSVLVIAAALGVVLLSNIVYSAFLLGGVFISISGIYILLNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   E      +R         +     I+ ++  +V       +
Sbjct: 67  VGAVNVLILFGIMLVN-KQEDFSTLPRRWIRQGATALVCVGIFILLSTMILVTPWSISTT 125

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                 N +  +GK  ++ +  P E++  +LL++M+GAI+L  R
Sbjct: 126 SPGVIENTIIELGKHFFSDFLLPFELASVLLLMAMVGAIILARR 169


>gi|81300154|ref|YP_400362.1| NADH dehydrogenase subunit J [Synechococcus elongatus PCC 7942]
 gi|81169035|gb|ABB57375.1| NADH dehydrogenase subunit 6 [Synechococcus elongatus PCC 7942]
          Length = 201

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 5/166 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + +   ++++  VV   N +YS F L   F++ AGL+LLL A FVA   +++Y
Sbjct: 7   VQLVTFIILTAGVVLAALGVVLSSNIVYSAFLLGGVFISIAGLYLLLNASFVAFAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +    +      G   + +L    +    +  V S    ++
Sbjct: 67  VGAVNVLILFAIMLVNKREDFRPLKFNWLRKG---LTVLVCGGLFALLSLTVISTPWAVT 123

Query: 123 RLVFKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                  +  +  IG+  ++ Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 PTPGASGDEAIYLIGEHFFSDYLLPFELASVLLLMAMIGAIVLARR 169


>gi|119513555|ref|ZP_01632572.1| NADH dehydrogenase subunit J [Nodularia spumigena CCY9414]
 gi|119461788|gb|EAW42808.1| NADH dehydrogenase subunit J [Nodularia spumigena CCY9414]
          Length = 221

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q +   +   M I ++  VV   N +YS F L   F++ A ++LLL  +FVA   ++VY
Sbjct: 24  VQFVALGILGVMMIGAALGVVLFSNVVYSAFMLGGVFISMAAIYLLLNGDFVAAAQVLVY 83

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   + A P    G        +      + +   +         
Sbjct: 84  VGAVNVLILFAIMLVNKREDFA-PFPSTGLRKVLTAVVSLGLFGLLSVMVLGTPWAYSTP 142

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             V   +++  IG+  +T +  P E++  +LL++M+GAI+L  R 
Sbjct: 143 AAVAPESSIVVIGEHFFTDFLLPFELASVLLLIAMVGAIILARRE 187


>gi|94968320|ref|YP_590368.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550370|gb|ABF40294.1| NADH dehydrogenase subunit J [Candidatus Koribacter versatilis
           Ellin345]
          Length = 169

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 93/162 (57%), Gaps = 1/162 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            FFY  + +++ S+  V+  +N ++S   LIF  +  AGL+L+L A FVA + +++Y G 
Sbjct: 8   FFFYFLAALSVGSALGVILRKNAVHSAIFLIFTLLAQAGLYLMLYAPFVAGVQIILYAGG 67

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V FLF+IM+++++  + E +  + +L    +  L   +++        +       ++
Sbjct: 68  IMVLFLFVIMLVNLERSLKEEQFNKQWLAGSAVAALFGVMLLLIYRNGGGTFP-STRAIL 126

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            + +N ++IG +LY  Y  P E++  +LL++++GA+V+  + 
Sbjct: 127 PEASNTQDIGVMLYRNYMLPFEVASLLLLVAIVGAVVMAKKR 168


>gi|257852684|gb|ACV71354.1| NADH dehydrogenase subunit 6 [Cassipourea lanceolata]
          Length = 178

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLFLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177


>gi|123967713|ref|YP_001008571.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. AS9601]
 gi|123197823|gb|ABM69464.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. AS9601]
          Length = 199

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 10/188 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           +  Q + F + S + +I +  VV + + +YS F L   F++ AGL+LLL A FVA   ++
Sbjct: 5   ITTQIICFTVLSLVILIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVL 64

Query: 61  VYVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVGAV V  +F IM+++   +   +++ + +R    S  + +L+  + V  +N    S 
Sbjct: 65  VYVGAVNVLIIFAIMLVNKKEDLKPISDIKSRRIISTSICLTLLSLLIRVDLTNVWRLSN 124

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
                +      +   IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DIS
Sbjct: 125 P----QNSIGEESTIRIGEHLFSDYLLPFEVASVLLLMAMIGAIVLA---RRDVMSKDIS 177

Query: 178 KQLESNPD 185
             L  + +
Sbjct: 178 TGLPVDQE 185


>gi|56750217|ref|YP_170918.1| NADH dehydrogenase subunit J [Synechococcus elongatus PCC 6301]
 gi|56685176|dbj|BAD78398.1| NADH dehydrogenase subunit 6 [Synechococcus elongatus PCC 6301]
          Length = 201

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 5/166 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + +   ++++  VV   N +YS F L  AF++ AGL+LLL A FVA   +++Y
Sbjct: 7   VQLVTFIILTAGVVLAALGVVLSSNIVYSAFLLGGAFISIAGLYLLLNASFVAFAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +    +      G   + +L    +    +  V S    ++
Sbjct: 67  VGAVNVLILFAIMLVNKREDFRPLKFNWLRKG---LTVLVCGGLFALLSLTVISTPWAVT 123

Query: 123 RLVFKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                  +  +  IG+  ++ Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 PTPGASGDEAIYLIGEHFFSDYLLPFELASVLLLMAMIGAIVLARR 169


>gi|133900526|gb|ABO41429.1| NADH dehydrogenase subunit 6 [Pimelodendron zoanthogyne]
          Length = 167

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VVY+GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG IL  E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLSYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 167


>gi|257852718|gb|ACV71371.1| NADH dehydrogenase subunit 6 [Stackhousia minima]
          Length = 180

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 13/176 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E++    N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLE 181
             N+E +G +LYT Y+    +   ILL++MIGAIVL +       +KRQD+ ++  
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNA 176


>gi|123965422|ref|YP_001010503.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9515]
 gi|123199788|gb|ABM71396.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9515]
          Length = 199

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 10/187 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F + S + I+ +  V+ + + +YS F L   F++ AGL+LLL A FVA   ++V
Sbjct: 6   TTQIICFSVLSLVVIVGALGVILLDSIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVA---EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           YVGAV V  +F IM+++   ++        +R    S  + +L+  + V  SN    +  
Sbjct: 66  YVGAVNVLIIFAIMLVNKKEDLKPINNINSRRIISTSICLTLLSLLIRVDLSNVWSLADP 125

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                      +   IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DIS 
Sbjct: 126 NSS----IGEESTIRIGEHLFSDYLLPFEVASVLLLMAMIGAIVLA---RRDVFNKDIST 178

Query: 179 QLESNPD 185
            L  + +
Sbjct: 179 GLPVDQE 185


>gi|157412515|ref|YP_001483381.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9215]
 gi|254525620|ref|ZP_05137672.1| NADH dehydrogenase i chain 6 (or j) [Prochlorococcus marinus str.
           MIT 9202]
 gi|157387090|gb|ABV49795.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9215]
 gi|221537044|gb|EEE39497.1| NADH dehydrogenase i chain 6 (or j) [Prochlorococcus marinus str.
           MIT 9202]
          Length = 199

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 10/188 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           +  Q + F + S + +I +  VV + + +YS F L   F++ AGL+LLL A FVA   ++
Sbjct: 5   ITTQFICFTVLSLVVLIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVL 64

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVA---EPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVGAV V  +F IM+++   ++    + + +R    S  + +L+  + V  +N    S 
Sbjct: 65  VYVGAVNVLIIFAIMLVNKKEDLKPINDIKSRRIISTSICLTLLSLLIRVDLTNVWNLS- 123

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
              +        +   IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DIS
Sbjct: 124 ---IPENSIGEESTIRIGEHLFSDYLLPFEVASVLLLMAMIGAIVLA---RRDVMSKDIS 177

Query: 178 KQLESNPD 185
             L  + +
Sbjct: 178 TGLPVDQE 185


>gi|75908928|ref|YP_323224.1| NADH dehydrogenase subunit J [Anabaena variabilis ATCC 29413]
 gi|75702653|gb|ABA22329.1| NADH dehydrogenase subunit J [Anabaena variabilis ATCC 29413]
          Length = 202

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 96/195 (49%), Gaps = 3/195 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M I ++  VV   + +YS F L   F++ AG++LLL  +FVA   ++VY
Sbjct: 7   VQVVSFGILATMLIGTALGVVLASSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +          +      I++  L    S  ++ +     +
Sbjct: 67  VGAVNVLILFAIMLVNKRQDFIP--YPSAGIRKILTAIVSVGLFALLSTMVLATPWAYST 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDISKQLE 181
                  ++  IG+  ++ +  P E++  +LL++M+GAI+L  R    ++   D+ + + 
Sbjct: 125 TPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARREYLPEVTPSDLPQTVL 184

Query: 182 SNPDNSIVMVKVKSG 196
           + P+    +V   S 
Sbjct: 185 TLPERPRELVGAGSE 199


>gi|133900550|gb|ABO41441.1| NADH dehydrogenase subunit 6 [Sapria himalayana]
          Length = 180

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F   +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+     N  +     +           +  +  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFLLDNESIPLLPTQRKTTSLGYTVYAGNIRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   +LL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLLLLVAMIGAIVLTMHRTTHSAVKRQDLFRRNAIDF 179


>gi|149909812|ref|ZP_01898463.1| putative oxidoreductase [Moritella sp. PE36]
 gi|149807144|gb|EDM67100.1| putative oxidoreductase [Moritella sp. PE36]
          Length = 190

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 6/176 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+  FF L + +AI +  LVV  RNPI+S  SL+  FV  A LF+LLG+ F+A+I L VY
Sbjct: 1   MEQQFFILLALVAIGTGLLVVVARNPIHSALSLVACFVQIAALFVLLGSPFLAVIQLFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGA++V FLF+IMMLD+  E          F+    I  + A L +      + S    L
Sbjct: 61  VGAIMVLFLFVIMMLDVRKEAHGRFINNSRFIQKGAIPAIVALLALATELLFLLSQSSRL 120

Query: 122 -----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                ++ V      + +   L+  +  P E++  ILL+++IGA+VL   +  + K
Sbjct: 121 HAVMTTQSVIGDEPTKQLSLTLFRDFLLPFEVASVILLVALIGAVVLAQSNGTNHK 176


>gi|254431361|ref|ZP_05045064.1| NAD(P)H-quinone oxidoreductase chain 6 [Cyanobium sp. PCC 7001]
 gi|197625814|gb|EDY38373.1| NAD(P)H-quinone oxidoreductase chain 6 [Cyanobium sp. PCC 7001]
          Length = 200

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F   S   ++ +  VV + N +YS F L   F++ AGL+L+L A FVA   ++V
Sbjct: 6   TTQFICFAALSATLVLGALGVVLLPNIVYSAFLLAGVFLSVAGLYLMLNASFVAAAQILV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   +++    K   L     G++   L V      V +     
Sbjct: 66  YVGAVNVLILFAIMLVNKREDLS--VIKGLALRRALSGLVCGGLFVLLIRVAVTTPWALP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                       IG+ L++ Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPTPVGEEATIRIGEHLFSDYLLPFELASVLLLMAMIGAIVLARR 168


>gi|33866802|ref|NP_898361.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 8102]
 gi|33639403|emb|CAE08787.1| NADH dehydrogenase I chain 6 (or J) [Synechococcus sp. WH 8102]
          Length = 200

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F + S + +  +  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   TTELICFLVLSAVVVTGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ V  LF IM+++   ++         +     G +   L+      ++ +     
Sbjct: 66  YVGAINVLILFAIMLVNKREDLKAIAGLN--VRRAVSGGVCLGLLALLVRVVLTTPWSLP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                       IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPAAVGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVLARR 168


>gi|257054401|ref|YP_003132233.1| NADH dehydrogenase subunit J [Saccharomonospora viridis DSM 43017]
 gi|256584273|gb|ACU95406.1| NADH dehydrogenase subunit J [Saccharomonospora viridis DSM 43017]
          Length = 304

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 89/203 (43%), Gaps = 6/203 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+  +  +V  RN ++S   L+   ++   L+L   A+F+    ++V
Sbjct: 27  TGEAIAFWILGPLALAGALGMVFARNAVHSALWLVLTMLSLGMLYLAQQAQFLGFTQIIV 86

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRG---FLGSFFIGILAAELIVCASNFMVFSAE 118
           Y GA+++ FLF++M++  +   +     RG     G   +G+               +  
Sbjct: 87  YTGAIMMLFLFVLMLVGRESSDSVVEVLRGQRLMAGLVGVGVAGLLAAALTRAIADVTPA 146

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL--MLRHRRDIKRQDI 176
             L      G     +G++++T Y +P E++  +L+ + +  +VL    RH +  KR   
Sbjct: 147 PLLDPWSADGGGAGGLGRLIFTDYLFPFELTAALLITAAMAGMVLSFTSRHVKGGKRSQ- 205

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
            + + +           K G G+
Sbjct: 206 RELVIARFRGEYERPSPKPGPGV 228


>gi|133900400|gb|ABO41366.1| NADH dehydrogenase subunit 6 [Bruguiera gymnorhiza]
          Length = 179

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F N +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRNTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTYMRYTVYAVKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQ+I ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQNIFRRNAIDF 177


>gi|257852586|gb|ACV71305.1| NADH dehydrogenase subunit 6 [Endodesmia calophylloides]
          Length = 180

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y     +   ILL++MIGAIVL +       +KRQDI ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179


>gi|145932445|ref|YP_001165357.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum]
 gi|110169643|gb|ABG54108.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum]
 gi|188484472|gb|ACD50861.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum]
          Length = 236

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 39/231 (16%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++FFY FS +A+ S+  V+   N IYS F LI  F N+ GL L+   EF++++ ++
Sbjct: 1   MNFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60

Query: 61  VYVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           +YVGA+ V FLF+IMMLD++  I+  +     G+L   F+      L        VF++ 
Sbjct: 61  IYVGAITVLFLFVIMMLDVNILIDKNKINNNLGYLPIIFLISFIFFLETFIMFSKVFTSY 120

Query: 119 GEL-------------------------------------SRLVFKGNNVENIGKVLYTQ 141
             L                                        V    N+E IG++LY+ 
Sbjct: 121 YHLINNSFFNKEVNTLFFFKDSMKGTFEIFVDVKPFLKNFINQVDTITNIETIGQILYSY 180

Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
           YA+    +G ILL+++IGA+ L  + +R   +Q I KQL  +   +I  V 
Sbjct: 181 YAFFFLAAGIILLIALIGAVTLTKKEKRKNFKQKIYKQLSRDSLKAIFNVN 231


>gi|56791562|gb|AAW30319.1| NADH dehydrogenase subunit 6 [Liriodendron tulipifera]
          Length = 177

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
            S  A++S  +V   +NP++ V   I  F + +GL LLLG +F AMI+ VV++GA+   F
Sbjct: 1   LSSPALVSGLMVARAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAASF 60

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----- 124
           LF++MM +I I        R    S  IG IL  E+     N  +       +       
Sbjct: 61  LFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFVLDNETIPLLPTHRNTTSLRYT 120

Query: 125 -----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+
Sbjct: 121 VHAGKVRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDV 177


>gi|78778546|ref|YP_396658.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9312]
 gi|78712045|gb|ABB49222.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9312]
          Length = 199

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 10/187 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F + S + +I +  VV + + +YS F L   F++ AGL+LLL A FVA   ++V
Sbjct: 6   TTQIICFIVLSLVVLIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVA---EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           YVGAV V  +F IM+++   ++      + +R    S  + +L+  + V  +N    ++ 
Sbjct: 66  YVGAVNVLIIFAIMLVNKKEDLKPINNIKSRRIISTSICLTLLSLLIRVDLTNVWRLASP 125

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
                      +   IG+ L++ Y  P E++  +LL++MIGAIVL    RRD+  +DIS 
Sbjct: 126 ----ENSIGEESTIRIGEHLFSDYLLPFELASVLLLMAMIGAIVLA---RRDVMNKDIST 178

Query: 179 QLESNPD 185
            L  + +
Sbjct: 179 GLPVDQE 185


>gi|78183864|ref|YP_376298.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9902]
 gi|116071524|ref|ZP_01468792.1| NADH dehydrogenase subunit J [Synechococcus sp. BL107]
 gi|78168158|gb|ABB25255.1| NADH dehydrogenase I chain 6 [Synechococcus sp. CC9902]
 gi|116065147|gb|EAU70905.1| NADH dehydrogenase subunit J [Synechococcus sp. BL107]
          Length = 200

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F + S + +  +  VV + N +YS F L   F+  AGL+LLL A FVA   +++
Sbjct: 6   STELICFLVLSAVVVTGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVMI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ V  LF IM+++   ++               G +   L+      +V +     
Sbjct: 66  YVGAINVLILFAIMLVNKREDLKAIANLTT--RRIVSGGVCLGLLALLVRVVVTTPWSLP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                       IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPAAVGEEATARIGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 168


>gi|56791576|gb|AAW30326.1| NADH dehydrogenase subunit 6 [Zamia integrifolia]
          Length = 181

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
            S  A++   +VV   NP++ V   I  F N +GL LL G +  AMI+ VV++GA+   F
Sbjct: 1   LSSPALVPGSMVVRAENPVHPVSFPIPVFRNTSGLLLLSGPDLSAMISPVVHIGAIAALF 60

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----- 124
             ++MML+I I     +  R    S  IG IL  E+ + + N  + S    +        
Sbjct: 61  SSVVMMLNIKIAEIHEKVSRYSPVSGIIGPILRWEMFLISDNDHIPSLPTYIGTTSLRYT 120

Query: 125 -----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                +    N E +G +L+T Y+    +S  + L++MIGAIVL +     +KRQD+ ++
Sbjct: 121 VHAGEIQSWTNSETLGNLLHTYYSVRFLVSSPVPLVAMIGAIVLTMHRTTKVKRQDVFRR 180

Query: 180 L 180
            
Sbjct: 181 N 181


>gi|109156446|ref|YP_654278.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia bipinnata]
 gi|108513891|gb|ABF93174.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia bipinnata]
          Length = 185

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 17/187 (9%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4   LFIIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAIMFISLGLDYIGLIFIIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IM++    +V                 +   +I    + +  S+    + ++ 
Sbjct: 64  AILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSSRYISNPVIG 116

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDI 176
              N+  IG  LYT Y   + I+  +LL++MIGAI+L                   RQD+
Sbjct: 117 SRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDL 176

Query: 177 SKQLESN 183
             Q+   
Sbjct: 177 FLQISRE 183


>gi|56791556|gb|AAW30316.1| NADH dehydrogenase subunit 6 [Calycanthus floridus]
          Length = 178

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
            S  A++S  +VV  +NP++ V   I  F + +GL LLLG +F AMI+LVV++GA+   F
Sbjct: 1   LSSPALVSGLMVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISLVVHIGAIAASF 60

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----- 124
           LF++MM  I I        R    S  IG I   E+     N  +       +       
Sbjct: 61  LFVVMMFHIQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYT 120

Query: 125 -----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
                V    N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ 
Sbjct: 121 VHAGKVRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVF 178


>gi|257852716|gb|ACV71370.1| NADH dehydrogenase subunit 6 [Siphonodon celastrineus]
          Length = 180

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             N+E +G +LYT Y+    +   ILL++MIGAIVL +       +KRQD+  +   + 
Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFPRNAIDF 179


>gi|170077546|ref|YP_001734184.1| NADH dehydrogenase subunit J [Synechococcus sp. PCC 7002]
 gi|22651980|gb|AAN03535.1|AF381034_3 NADH dehydrogenase subunit G [Synechococcus sp. PCC 7002]
 gi|169885215|gb|ACA98928.1| NADH dehydrogenase subunit G [Synechococcus sp. PCC 7002]
          Length = 205

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 1/164 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M + S+  VV   N +YS F L   F++ +G ++LL A+FVA   +++Y
Sbjct: 7   VQIVSFVILTVMMLGSALGVVLFENIVYSAFLLGGVFISISGFYILLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF IM+++   + ++    R         +      +  +  +V   E    
Sbjct: 67  VGAINVLILFAIMLVNKKEDFSQ-MPGRLLRQGATALVCLGLFALLGTMVLVTPWELSTI 125

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                GN+V  I K  ++ +  P E++  +LL++M+GAI+L  R
Sbjct: 126 SPAAVGNSVVAIAKHFFSDFLLPFELASVLLLIAMVGAIILARR 169


>gi|78213918|ref|YP_382697.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9605]
 gi|78198377|gb|ABB36142.1| NADH dehydrogenase I chain 6 (or J) [Synechococcus sp. CC9605]
          Length = 199

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F + S + +I +  VV + N +YS F L   F   AGL+LLL A FVAM  ++V
Sbjct: 6   TTELICFLVLSAVVVIGALGVVLLSNIVYSAFLLGGVFTAVAGLYLLLNASFVAMAQILV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ V  LF IM+++   ++                 + A L+      +V +     
Sbjct: 66  YVGAINVLILFAIMLVNKREDLKAIANLTT--RRVVSAGVCAGLMALLVRVVVTTPWSLP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +         IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPVAVGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVLARR 168


>gi|33864283|ref|NP_895843.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9313]
 gi|33641063|emb|CAE22192.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9313]
          Length = 200

 Score =  130 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 4/193 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F +   + ++ S  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   STELICFLVLGAVVVLGSLGVVLLGNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++         +     G + A L V     ++ +     
Sbjct: 66  YVGAVNVLILFAIMLVNKREDLKPIEGL--PIRRLLSGGVCAGLFVLFFRVVITTPWAVP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQ 179
                     E IG+ L+T Y  P E++  +LL++MIGAIVL  R     D+   D   Q
Sbjct: 124 GPAAIGVGATERIGEHLFTDYLLPFELASVLLLMAMIGAIVLARRDVLETDVGTGDAVNQ 183

Query: 180 LESNPDNSIVMVK 192
                  + ++V 
Sbjct: 184 GLIEKAQTPLLVD 196


>gi|124024376|ref|YP_001018683.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT
           9303]
 gi|123964662|gb|ABM79418.1| putative NADH Dehydrogenase (complex I) subunit (chain 6)
           [Prochlorococcus marinus str. MIT 9303]
          Length = 200

 Score =  130 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 4/193 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F +   + ++ S  VV + N +YS F L   F+  AGL+LLL A FVA   ++V
Sbjct: 6   STELICFLVLGAVVVLGSLGVVLLGNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++         +     G + A L V     ++ +     
Sbjct: 66  YVGAVNVLILFAIMLVNKREDLKPIEGL--PIRRLLSGGVCAGLFVLFFRVVITTPWAVP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQ 179
                     E IG+ L+T Y  P E++  +LL++MIGAIVL  R     D+   D   Q
Sbjct: 124 GPAAIGVGATERIGEHLFTDYLLPFELASVLLLMAMIGAIVLARRDVLETDVGTGDAVNQ 183

Query: 180 LESNPDNSIVMVK 192
                  + ++V 
Sbjct: 184 GLIEKARTPLLVD 196


>gi|284039951|ref|YP_003389881.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma
           linguale DSM 74]
 gi|283819244|gb|ADB41082.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma
           linguale DSM 74]
          Length = 184

 Score =  130 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S+  VVT RNPIYSV +LI  F   +G ++LL A+F+A + ++VY GA++V FLF IM L
Sbjct: 28  SAIGVVTARNPIYSVLALIATFFCLSGHYVLLNAQFLAAVNIIVYAGAIMVLFLFTIMFL 87

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-ELSRLVFKGNNVENIGK 136
           ++  E  E +     + S  +G +   +++               +    K   VEN+G+
Sbjct: 88  NLRKEDEESKTNLTKMASVVVGGMLMIMLITIFRAKSAQVPTVSATSFSAKTGLVENLGQ 147

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +LY+ Y  P E++  + L++M+GA++L  R 
Sbjct: 148 LLYSDYILPFELASVLFLVAMVGAVMLGKRE 178


>gi|218900420|ref|YP_002448831.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus G9842]
 gi|218543477|gb|ACK95871.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus G9842]
          Length = 174

 Score =  130 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MNGEFVAFFILSLTAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E  
Sbjct: 61  LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              L    NN   IG +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 120 QGSLPLHENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169


>gi|37520222|ref|NP_923599.1| NADH dehydrogenase subunit J [Gloeobacter violaceus PCC 7421]
 gi|35211215|dbj|BAC88594.1| NADH dehydrogenase subunit 6 [Gloeobacter violaceus PCC 7421]
          Length = 197

 Score =  130 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 7/166 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + +  +  VV +R+ ++S F L   F+ AAGL++LL A+FVA   +++Y
Sbjct: 7   VQLVSFIILTAIVLGGAAGVVLLRSMVHSAFLLGLVFIGAAGLYVLLNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V  LF IM+++  I    P    R  +       L A L VC     +F    ++
Sbjct: 67  VGAVNVLILFAIMLVNKRIPTDRPAFSPRNAVTGLVCAGLFALLAVC-----IFQVPWQI 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              V   N V  IGK  ++++  P E++  +LLL+M+GAI+L  R 
Sbjct: 122 QEPVA-MNTVVEIGKRFFSEFLLPFEVASVLLLLAMVGAIILAQRE 166


>gi|327398406|ref|YP_004339275.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hippea
           maritima DSM 10411]
 gi|327181035|gb|AEA33216.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hippea
           maritima DSM 10411]
          Length = 167

 Score =  130 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 86/164 (52%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+++ FY+ + + +  +  V+  +NP  +   ++ AF   AGLF++L A+F AM+ L+VY
Sbjct: 1   MEAIVFYIIAILTVGGALGVLLSKNPYRAALFMVLAFFGIAGLFVMLHAQFNAMLQLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA+ V     +M+++        R    +  + FIGI     ++  +            
Sbjct: 61  AGAIAVMITLTMMVMNRRTLEGLKRFNSQWYWAAFIGIGLLADLIALAYKFKIDLSNAGK 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            L   G+N + IG+VL+  Y  P EI+  ILL++++GA+VL  R
Sbjct: 121 NLALGGSNTKLIGEVLFKHYLLPFEITAIILLVALLGAVVLTKR 164


>gi|17227721|ref|NP_484269.1| NADH dehydrogenase subunit J [Nostoc sp. PCC 7120]
 gi|28201839|sp|Q8Z075|NU6C_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName:
           Full=NAD(P)H dehydrogenase I, chain 6; AltName:
           Full=NDH-1, chain 6; AltName: Full=NDH-G
 gi|17135203|dbj|BAB77749.1| NADH dehydrogenase subunit 6 [Nostoc sp. PCC 7120]
          Length = 202

 Score =  130 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 2/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M I ++  VV   + +YS F L   F++ AG++LLL  +FVA   ++VY
Sbjct: 7   VQVVSFGILATMLIGTALGVVLATSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +          +      I++  L    S  ++ +     +
Sbjct: 67  VGAVNVLILFAIMLVNKRQDFTP--YPSAGIRKVLTAIVSVGLFALLSTMVLATPWAYST 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                  ++  IG+  ++ +  P E++  +LL++M+GAI+L  R 
Sbjct: 125 TPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARRE 169


>gi|87301842|ref|ZP_01084676.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 5701]
 gi|87283410|gb|EAQ75365.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 5701]
          Length = 208

 Score =  130 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V Q + F   S   ++ S  VV + N +YS F L   F++ AGL+LLL A FVA   ++V
Sbjct: 6   VTQLVCFIALSLTLVLGSLGVVLLPNIVYSAFLLAGVFLSVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++    +AE       L     G +   L +      + +     
Sbjct: 66  YVGAVNVLILFAIMLVNKKEAMAE--IPGLLLRRLLSGAVCLGLFLLILRVDLTTPWAVP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                  +    IG  L++ Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPTPLGDDATVLIGIHLFSDYLLPFELASVLLLMAMIGAIVLARR 168


>gi|75764475|ref|ZP_00743962.1| NADH-quinone oxidoreductase chain J [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488038|gb|EAO51767.1| NADH-quinone oxidoreductase chain J [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 174

 Score =  130 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MNGEFVAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E  
Sbjct: 61  LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              L    NN   IG +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 120 QGSLPLHENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169


>gi|262200412|ref|YP_003271620.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gordonia
           bronchialis DSM 43247]
 gi|262083759|gb|ACY19727.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gordonia
           bronchialis DSM 43247]
          Length = 269

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 5/172 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A++ +  VV     +YS   L    +  A  ++  GA F+ ++ +VV
Sbjct: 14  TGEAVQFWVLGGVAVLGALGVVFATKAVYSAIFLATTMIILAIFYVAQGALFLGVVQVVV 73

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFS 116
           Y GAV++ FLF++M++ +D   +     RG      +     GIL    I  AS      
Sbjct: 74  YTGAVMMLFLFVLMLIGVDSSDSLVETLRGQRLAAAVIGLGFGILLIAGIGTASVATFAG 133

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           A            NVE I ++++ QY +  E++G +L+ + +GA+VL  R R
Sbjct: 134 APAAGGSSTAGDGNVEAIAELIFVQYLWAFELTGALLITATLGAMVLAHRER 185


>gi|73667097|ref|YP_303113.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia
           canis str. Jake]
 gi|72394238|gb|AAZ68515.1| NADH dehydrogenase subunit J [Ehrlichia canis str. Jake]
          Length = 200

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 7/197 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F+ F+ + ++SS  VV + NP+YSV  LI  F  ++ LF+LLGAE +AM+ ++VY
Sbjct: 1   MVYFLFHFFAALIVLSSVAVVYISNPVYSVLFLILTFFISSTLFILLGAELIAMLVIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLDI+      R K  F     IG+L   ++     F++  +     
Sbjct: 61  VGAVAVLFLFVVMMLDINYS----RFKNVFTKYLAIGLLCGVILFVNIVFIIRQSATTEL 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQ 179
           ++  V   +NV  IG ++YT+Y Y   +SG +LL+S+IGA+VL LR +   + RQ+I+ Q
Sbjct: 117 VTESVQYVSNVVAIGNLIYTEYMYIFHLSGILLLISIIGALVLTLRAKNSSVHRQNINMQ 176

Query: 180 LESNPDNSIVMVKVKSG 196
           +        V VKVK G
Sbjct: 177 INRPSSIKYVSVKVKEG 193


>gi|260436292|ref|ZP_05790262.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 8109]
 gi|260414166|gb|EEX07462.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 8109]
          Length = 199

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F + S + +I +  VV + N +YS F L   F   AGL+LLL A FVAM  ++V
Sbjct: 6   TTELICFLVLSAVVVIGALGVVLLSNIVYSAFLLGGVFTAVAGLYLLLNASFVAMAQILV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ V  LF IM+++   ++                 +   L+      +V +     
Sbjct: 66  YVGAINVLILFAIMLVNKREDLKAIANLTT--RRVVSAGVCVGLLALLVRVVVTTPWSLP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                       IG+ L+T Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPAAVGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVLARR 168


>gi|30023327|ref|NP_834958.1| NADH dehydrogenase subunit J [Bacillus cereus ATCC 14579]
 gi|218235796|ref|YP_002370069.1| NADH dehydrogenase subunit J [Bacillus cereus B4264]
 gi|296505721|ref|YP_003667421.1| NADH dehydrogenase subunit J [Bacillus thuringiensis BMB171]
 gi|29898888|gb|AAP12159.1| NADH-quinone oxidoreductase chain J [Bacillus cereus ATCC 14579]
 gi|218163753|gb|ACK63745.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus B4264]
 gi|296326773|gb|ADH09701.1| NADH dehydrogenase subunit J [Bacillus thuringiensis BMB171]
 gi|326943092|gb|AEA18988.1| NADH dehydrogenase subunit J [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 174

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MNGEFVAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E  
Sbjct: 61  LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANEST 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              L    NN   IG +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 120 QGSLPLHENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169


>gi|326382754|ref|ZP_08204444.1| NADH:ubiquinone oxidoreductase subunit J [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198344|gb|EGD55528.1| NADH:ubiquinone oxidoreductase subunit J [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 282

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 15/208 (7%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F++   + +I +  VV     +YS   L    +  A  +++ GA F+ ++ +VVY 
Sbjct: 17  EAVTFWVLGAVVVIGALGVVLSPKAVYSAVFLAMTMIILAVFYVMQGALFLGVVQVVVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASN---FMVFSAEG 119
           GAV++ FLF++M++ +D   +     RG  L +  +G+  A L++ A       VF    
Sbjct: 77  GAVMMLFLFVLMLIGVDSSESLVESIRGQRLAAAGLGLGFAVLLIAAIGSATLAVFVGAP 136

Query: 120 ELSRLVFKGN-----------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           + S     G            N+  + ++++ +Y +  E++G +L+ + +GA+VL  R R
Sbjct: 137 DFSHGTAPGGPSTELRTGGNQNIRALAELIFGRYLWAFELTGALLITATLGAMVLAHRQR 196

Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSG 196
              +     + +E     +        G
Sbjct: 197 FGPRNGQREQSVERFSSGAHATPLPPPG 224


>gi|257852750|gb|ACV71387.1| NADH dehydrogenase subunit 6 [Calycanthus floridus]
          Length = 178

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++ V   I  F + +GL LLLG +F AMI+LVV++GA+   FLF++MM  
Sbjct: 1   GLMVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISLVVHIGAIAASFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG++   E+     N  +       +            V  
Sbjct: 61  IQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVHAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
             N+E +G +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   +
Sbjct: 121 WTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176


>gi|261420755|ref|YP_003254437.1| NADH dehydrogenase subunit J [Geobacillus sp. Y412MC61]
 gi|319768425|ref|YP_004133926.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. Y412MC52]
 gi|261377212|gb|ACX79955.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. Y412MC61]
 gi|317113291|gb|ADU95783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. Y412MC52]
          Length = 173

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 1/172 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + F+L +  AI     ++ + N ++ V +L+  FV  AGL++LL AEFVA++ ++
Sbjct: 1   MSGTDIAFFLLALAAIAGGVTMLQLTNVVHMVIALVMTFVGIAGLYVLLSAEFVAVVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  LF IM+     +  E +   G      +  L+      A  F +   +  
Sbjct: 61  IYSGAITIIMLFAIMLTRHHTDERERQTTGGVWHKA-VAALSVIAFGLAVYFGIRQLDFG 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  G+N + IGK LY+ Y  P EI   ILL+++IGAIVL  +  +  +
Sbjct: 120 ADGSALSGDNAKAIGKSLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAE 171


>gi|68171482|ref|ZP_00544866.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658094|ref|YP_507364.1| NADH dehydrogenase I, J subunit [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999088|gb|EAM85755.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599551|gb|ABD45020.1| NADH dehydrogenase I, J subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 200

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/200 (38%), Positives = 120/200 (60%), Gaps = 9/200 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F+ F+ + ++SS  VV V NP+YSV  LI  F  ++ LF+LLGAE +AM+ ++VY
Sbjct: 1   MIYFLFHFFAVLIVLSSISVVYVSNPVYSVLFLILTFFISSTLFILLGAELIAMLVIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
           VGAV V FLF++MMLDI+      R K GF     IG+L   ++     F++  +     
Sbjct: 61  VGAVAVLFLFVVMMLDINYS----RLKSGFTKYLAIGLLCGMILFVNIVFVIKQSATTEL 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQ 179
           ++  V   +NV  IG ++YT+Y Y   +SG +LL+S+IG++VL LR +  ++ RQ +  Q
Sbjct: 117 VTGSVSYVSNVIAIGNLIYTKYMYVFHLSGILLLISIIGSLVLTLRTKNGNVYRQSVGAQ 176

Query: 180 LESNPDNSIVMVKVKSGKGI 199
           +  N  +++  V VK  +G+
Sbjct: 177 V--NRSSTVKYVNVKVRQGV 194


>gi|186685675|ref|YP_001868871.1| NADH dehydrogenase subunit J [Nostoc punctiforme PCC 73102]
 gi|186468127|gb|ACC83928.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nostoc
           punctiforme PCC 73102]
          Length = 204

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 98/197 (49%), Gaps = 5/197 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q +   +   M I ++  VV   + +YS F L   F++ AG++LLL  +FVA   +++Y
Sbjct: 7   VQLISLGILGVMMIGAAIGVVLFSSIVYSAFMLGGVFISMAGIYLLLNGDFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121
           VGAV V  LF IM+++   +         ++     G+++  L    S  ++ +      
Sbjct: 67  VGAVNVLILFAIMLVNKRQDFV--AFPNSWVRKLLTGLVSVGLFGLLSTMVLATPWAYST 124

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQ 179
           + +V   +++  IG+  +T +  P E++  +LL++M+GAI+L  R      + R ++ + 
Sbjct: 125 TPVVGGESSIVVIGEHFFTDFLLPFELASILLLIAMVGAIILARREYLPDQLTRSNVGQT 184

Query: 180 LESNPDNSIVMVKVKSG 196
           + +  +    +V   S 
Sbjct: 185 VLTLQERPRELVSTTSE 201


>gi|119485497|ref|ZP_01619825.1| NADH dehydrogenase subunit J [Lyngbya sp. PCC 8106]
 gi|119457253|gb|EAW38379.1| NADH dehydrogenase subunit J [Lyngbya sp. PCC 8106]
          Length = 232

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 87/166 (52%), Gaps = 4/166 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F L + M +  +  VV + N +YS F L   F++ AGL++LL A+FVA   +++Y
Sbjct: 31  VQIISFGLLTVMMLGGALGVVLLENIVYSAFLLGGVFMSMAGLYILLNADFVAAAQVLIY 90

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VG+V V  LF IM+++             ++      ++ + L    S  ++ +     +
Sbjct: 91  VGSVNVLILFGIMLVNKQESFK--ALPNPWVRKGATALVCSGLFALLSTMVLSTPWMSQA 148

Query: 123 RL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +    + +++  IG+  +T +  P E++   LL++M+GAI+L  R
Sbjct: 149 TVSVPPEESSIMIIGQHFFTDFLLPFELASVFLLMAMVGAIILARR 194


>gi|206970330|ref|ZP_03231283.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH1134]
 gi|206734907|gb|EDZ52076.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH1134]
          Length = 174

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MNGEFVAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E  
Sbjct: 61  LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVGFANEST 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              L    NN   IG +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 120 QGSLPLHENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169


>gi|163942982|ref|YP_001647866.1| NADH dehydrogenase subunit J [Bacillus weihenstephanensis KBAB4]
 gi|163865179|gb|ABY46238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           weihenstephanensis KBAB4]
          Length = 174

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 91/166 (54%), Gaps = 1/166 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MNGEFVAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   + E       R ++  FF  +    ++  A N + FS +  
Sbjct: 61  LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNQST 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
              L    NN   IG +LY++Y  P E++  ILL++++GAI+L  +
Sbjct: 120 QGSLPLHENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKK 165


>gi|297531550|ref|YP_003672825.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. C56-T3]
 gi|297254802|gb|ADI28248.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. C56-T3]
          Length = 173

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 1/172 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + F+L +  AI     ++ + N ++ V +L+  F+  AGL++LL AEFVA++ ++
Sbjct: 1   MSGTDIAFFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  LF IM+     +  E     G      +  L+      A  F +   +  
Sbjct: 61  IYSGAITIIMLFAIMLTRHHTDERERPTTGGVWHKA-VAALSVIAFGLAVYFGIRQLDFG 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  G+N + IGK LY+ Y  P EI   ILL+++IGAIVL  +  +  +
Sbjct: 120 ADGSALSGDNAKAIGKSLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAE 171


>gi|158335316|ref|YP_001516488.1| NADH dehydrogenase subunit J [Acaryochloris marina MBIC11017]
 gi|158305557|gb|ABW27174.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain J,
           putative [Acaryochloris marina MBIC11017]
          Length = 198

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q +   L S M + ++  VV   + +YS F+L   F++ AGL++LL A+FV+   +++Y
Sbjct: 7   VQLVSLILLSVMMLGAALGVVLFESIVYSAFTLGAVFISIAGLYILLNADFVSAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +       R ++       ++  L    +  ++ +      
Sbjct: 67  VGAVNVLILFAIMLVNKTEDFKP--LPRRWIRKVSTAFVSLALFTLLATMVLQTNWPVDV 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            L    ++VE IG   +T Y  P E++  +LL++++GA+VL  R  
Sbjct: 125 ALAPPASSVETIGIHFFTDYLLPFELASILLLMALVGAVVLARRET 170


>gi|56421884|ref|YP_149202.1| NADH dehydrogenase subunit J [Geobacillus kaustophilus HTA426]
 gi|56381726|dbj|BAD77634.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Geobacillus
           kaustophilus HTA426]
          Length = 173

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 1/172 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + F+L +  AI     ++ + N ++ V +L+  F+  AGL++LL AEFVA++ ++
Sbjct: 1   MSGTDIAFFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  LF IM+     +  E +   G      +  L+      A  F +   +  
Sbjct: 61  IYSGAITIIMLFAIMLTRHHTDERERQTTGGVWHKA-VAALSVIAFGLAVYFGIRQLDFG 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  G+N + IGK+LY+ Y  P EI   ILL+++IGAIVL  +  +  +
Sbjct: 120 ADGSALAGDNAKAIGKLLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAE 171


>gi|11466641|ref|NP_066324.1| NADH dehydrogenase subunit 6 [Malawimonas jakobiformis]
 gi|10178679|gb|AAG13691.1|AF295546_17 NADH dehydrogenase subunit 6 [Malawimonas jakobiformis]
          Length = 190

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 10/190 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY +S + I+S+ +V+ V NPI+S+  LI  F+N +GL +LL  EF+A+  ++VY
Sbjct: 1   MSEILFYFYSILTIVSAIMVIAVTNPIHSILFLILVFINVSGLLILLEVEFLAITLIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119
           VGA+ V FL + MM +I I V+             I I+    ++   N    S      
Sbjct: 61  VGAIAVLFLSVTMMPNIKIVVSNLNLLHYIPIGGIITIIFLLEMIICFNNDFISIFNLNN 120

Query: 120 -------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                  + +  +    N+E+IG ++YT Y     ISGFILLL+M GAIVL L    +IK
Sbjct: 121 INDFDFIQWTNELKHMTNIESIGILIYTHYYDLFIISGFILLLAMNGAIVLTLHINNNIK 180

Query: 173 RQDISKQLES 182
           RQ I  Q+ S
Sbjct: 181 RQQIFFQIYS 190


>gi|113475269|ref|YP_721330.1| NADH dehydrogenase subunit J [Trichodesmium erythraeum IMS101]
 gi|110166317|gb|ABG50857.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Trichodesmium erythraeum IMS101]
          Length = 207

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M I ++  VV   N ++S F L   F++ +GL+LLL A+FVA   +++Y
Sbjct: 7   VQFVSFVILAVMMIAAALGVVLFSNIVHSAFLLGGVFMSISGLYLLLNADFVATAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121
           VGAV V  LF IM+++   +         +      G++   L    S  ++ S+    +
Sbjct: 67  VGAVNVLILFAIMLVNKREDFK--ALPNAWFRKVATGLVCFGLFALLSTMVLSSSWSIPV 124

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                + +++  IGK  +T +  P E++   LL++M+GAI+L  R
Sbjct: 125 VGNATRESSIVLIGKHFFTDFLLPFELASVCLLIAMVGAIILARR 169


>gi|257852652|gb|ACV71338.1| NADH dehydrogenase subunit 6 [Elvasia calophyllea]
          Length = 168

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 11/168 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +VV  +NP++SV   I  F + +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127
           I I        R    S  IG I   E+     N  +     + +            V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             N+E +G +LYT Y     +   ILL++MIGAIVL +     +KRQD
Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQD 168


>gi|1352591|sp|P48925|NU6M_CYACA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|758173|emb|CAA88767.1| NADH dehydrogenase subunit 6 [Cyanidium caldarium]
          Length = 201

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/197 (36%), Positives = 125/197 (63%), Gaps = 7/197 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++ + FY FS ++++S+ +V++V+NP++SV  LI  F N  GL LLLGAEF++++ L+VY
Sbjct: 2   IKLVLFYFFSGLSLVSASIVISVKNPVFSVVFLILVFFNVVGLLLLLGAEFLSLLFLIVY 61

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-- 119
           VGA+ V FLF++M+L++  IE+        F GS  + I   E+ +  ++ + F++    
Sbjct: 62  VGAIAVLFLFVVMILNLKFIELRSSFFYYAFFGSLIMAIFLFEIFIILNSDLTFASSYFL 121

Query: 120 ----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
                  + ++   N++ +G VLYT Y+Y   +SGF+LL++++GAI+L L  R  I+RQD
Sbjct: 122 ERKRIWVQELYSYTNLQILGNVLYTSYSYLFILSGFVLLVAILGAIILTLYQRSQIRRQD 181

Query: 176 ISKQLESNPDNSIVMVK 192
            + Q+  N D++I   K
Sbjct: 182 PNVQVVRNFDDTIRFFK 198


>gi|224178046|ref|YP_002600968.1| subunit 6 of NADH-plastoquinone oxidoreductase [Pyramimonas
           parkeae]
 gi|215882713|gb|ACJ71086.1| subunit 6 of NADH-plastoquinone oxidoreductase [Pyramimonas
           parkeae]
          Length = 172

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 1/167 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q   F +F+F++I  S  VV   N +Y+ F L    V+ AG +LLL A+F+A   ++
Sbjct: 1   MNLQDFCFSIFTFLSITGSLGVVFFPNLVYAAFFLGVTLVSVAGFYLLLNADFLAAAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVG + +  LF IM++D +  V  P  K+        G LA  L +  +  +++     
Sbjct: 61  LYVGGINILILFAIMLVDANARVTRPDSKKTNPFWIVQGSLAVGLFLLLTK-VIYITPWP 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               +   N V  IG+ +++ + +P E+   +LL+++IG +VL  R 
Sbjct: 120 SPPFIPVTNTVYFIGRHIFSDFLFPFELVSILLLIALIGVVVLAKRE 166


>gi|34556908|ref|NP_906723.1| NADH dehydrogenase subunit J [Wolinella succinogenes DSM 1740]
 gi|34482623|emb|CAE09623.1| NADH OXIDOREDUCTASE I [Wolinella succinogenes]
          Length = 190

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 7/192 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FYLF+ ++     +VVT  N ++++ +L    +  +  F +LGAEF+ +  ++VY
Sbjct: 2   FETIAFYLFAALSASMFLIVVTTNNVLHALSALAAGMIFISAFFFMLGAEFLGVAQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+  + F +M  D    + E  + R  L      +    L++  + F+  S +    
Sbjct: 62  TGAVMALYAFGMMFFDSSKAIKEKEENRWVLWVLIGIVTLLLLVILGAPFIHLSLDAR-H 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +     N E IG VL+TQY  P E++  +LL++MI  IVL        K+ D S  L S
Sbjct: 121 PIPEGVGNTEAIGYVLFTQYLVPFELAAVMLLVAMIAGIVLA------GKKMDQSLTLMS 174

Query: 183 NPDNSIVMVKVK 194
           + +  I++ K K
Sbjct: 175 DEEAEILLKKTK 186


>gi|220907087|ref|YP_002482398.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 7425]
 gi|219863698|gb|ACL44037.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 7425]
          Length = 207

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q++   L   M I S+  VV + N +YS F L   F++ AG +LLL A+FV+   +++Y
Sbjct: 7   VQTVSVVLLGLMMIGSALGVVLLNNIVYSAFLLGGVFISMAGFYLLLNADFVSAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   + A    +  ++      +++  L       +V +     S
Sbjct: 67  VGAVNVLILFAIMLVNKREDFAPVAGR--WIRQGAAALVSLGLFALLGTMVVQTPWPIPS 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                 + +  IG+  ++ +  P E++  +LL++++GA+VL  R 
Sbjct: 125 VASTVTSTLVVIGEHFFSDFLLPFELASVLLLMALVGAVVLARRE 169


>gi|42784464|ref|NP_981711.1| NADH dehydrogenase subunit J [Bacillus cereus ATCC 10987]
 gi|118480335|ref|YP_897486.1| NADH dehydrogenase subunit J [Bacillus thuringiensis str. Al Hakam]
 gi|196045757|ref|ZP_03112987.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           03BB108]
 gi|206976921|ref|ZP_03237823.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           H3081.97]
 gi|217962783|ref|YP_002341359.1| NADH dehydrogenase subunit J [Bacillus cereus AH187]
 gi|222098765|ref|YP_002532823.1| NADH dehydrogenase subunit j [Bacillus cereus Q1]
 gi|225867271|ref|YP_002752649.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           03BB102]
 gi|301056761|ref|YP_003794972.1| NADH dehydrogenase subunit J [Bacillus anthracis CI]
 gi|42740396|gb|AAS44319.1| NADH dehydrogenase I, J subunit [Bacillus cereus ATCC 10987]
 gi|118419560|gb|ABK87979.1| NADH dehydrogenase subunit J [Bacillus thuringiensis str. Al Hakam]
 gi|196023588|gb|EDX62265.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           03BB108]
 gi|206744887|gb|EDZ56292.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           H3081.97]
 gi|217062987|gb|ACJ77237.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH187]
 gi|221242824|gb|ACM15534.1| NADH dehydrogenase I, J subunit [Bacillus cereus Q1]
 gi|225787352|gb|ACO27569.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           03BB102]
 gi|300378930|gb|ADK07834.1| NADH dehydrogenase subunit J [Bacillus cereus biovar anthracis str.
           CI]
          Length = 174

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MNGEFIAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E  
Sbjct: 61  LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              L     N   IG +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 120 QGSLPLHEKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169


>gi|323398669|ref|YP_004222744.1| NADH dehydrogenase subunit 6 [Glaucocystis nostochinearum]
 gi|321401362|gb|ADW83116.1| NADH dehydrogenase subunit 6 [Glaucocystis nostochinearum]
          Length = 249

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 32/223 (14%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++  FF LFSF+A+ SS + +T +NPI+SVF LI  F N  GL +LL AEF+AM+ LV
Sbjct: 28  LSIEYTFFILFSFLALFSSIIAITSKNPIHSVFYLILVFFNVTGLLILLNAEFLAMLILV 87

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY+GA+ V FLF++MML+I     +    + F   FFI +L    +   +   V      
Sbjct: 88  VYLGAIAVLFLFVVMMLNIKYITLKQITYKNFFFEFFIFLLLFLEVFLLTENNVLPNIIN 147

Query: 121 ----------------LSRLVFK---------------GNNVENIGKVLYTQYAYPLEIS 149
                           ++ L FK                 N    G V+Y  Y Y   ++
Sbjct: 148 FFDMKFLTNIEKYLDVINNLYFKYYKTSLDLGSFDNSLYTNAHLFG-VIYISYLYYFFMA 206

Query: 150 GFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
           GFILL++MIGAIVL L  R ++++Q I  Q+  +   ++V+ K
Sbjct: 207 GFILLIAMIGAIVLTLHRRPNVRKQQIIDQITRDFKAAVVLRK 249


>gi|284050277|ref|ZP_06380487.1| NADH dehydrogenase subunit J [Arthrospira platensis str. Paraca]
 gi|291568239|dbj|BAI90511.1| NADH dehydrogenase subunit 6 [Arthrospira platensis NIES-39]
          Length = 206

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 2/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F L + M I S+  VV ++N +YS F L   F++ AGL+LLL A+FVA   +++Y
Sbjct: 7   VQVVSFGLLTIMMISSALGVVLLKNIVYSAFLLGGVFMSMAGLYLLLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VG+V V  LF IM+++   +          L      ++   L    S  ++ +     +
Sbjct: 67  VGSVNVLILFGIMLVNKQQDF--RVLPNAGLRQIATAVVCVGLFALLSTMVLSTPWSVTA 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +V   ++   IG+  +T +  P E++   LL++M+GAIVL  R
Sbjct: 125 AVVSIESSAIAIGEHFFTDFLLPFELASVFLLMAMVGAIVLARR 168


>gi|23464626|ref|NP_696994.1| NADH dehydrogenase subunit 6 [Monosiga brevicollis ATCC 50154]
 gi|23344088|gb|AAN28364.1| NADH dehydrogenase subunit 6 [Monosiga brevicollis]
          Length = 228

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 28/209 (13%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     Y+FS  A  S  LV++ +NPI SV  L+  F N++ L L+LG EF+A++ L+VY
Sbjct: 1   MIETLVYIFSIGAFFSGILVISSKNPINSVLGLVMCFANSSILLLMLGFEFLALLFLIVY 60

Query: 63  VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGA+ + FLF++MML+I  +E+ E   +   +G     I   EL+V        S+    
Sbjct: 61  VGALAILFLFVVMMLNIRLVELIENFTRYLPIGGIIGIIFILELMVIVDEQFAMSSNNLF 120

Query: 122 SRL---------------------------VFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           ++L                           +    N+E+IG++LYT       +S  +LL
Sbjct: 121 TQLFFINNPYELSLFMNSYSVDITSNYNNNIVNLTNIESIGQILYTHGYIYFIVSSIVLL 180

Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           ++M+GAIVL L H + +KRQDI  Q+ + 
Sbjct: 181 IAMVGAIVLTLYHEQGVKRQDIFSQISTQ 209


>gi|324329242|gb|ADY24502.1| NADH:ubiquinone oxidoreductase subunit J [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 174

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S  AII   L++ V   ++ + +L+  F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MNGEFIAFFILSLSAIIGGILMLNVTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E  
Sbjct: 61  LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              L     N   IG +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 120 QGSLPLHEKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169


>gi|196039591|ref|ZP_03106896.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           NVH0597-99]
 gi|196029751|gb|EDX68353.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus
           NVH0597-99]
          Length = 174

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MNGEFIAFFILSLFAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E  
Sbjct: 61  LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              L     N   IG +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 120 QGSLPLHEKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169


>gi|269958708|ref|YP_003328495.1| NADH dehydrogenase subunit J [Anaplasma centrale str. Israel]
 gi|269848537|gb|ACZ49181.1| NADH dehydrogenase subunit J [Anaplasma centrale str. Israel]
          Length = 200

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 118/202 (58%), Gaps = 11/202 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M S  F+ F+ +A++S+  V+ + NPIYSV SLI  F  ++ +F++LGAE VAM+ ++VY
Sbjct: 1   MLSFLFFCFAGVAVLSAVGVILLPNPIYSVLSLILTFFVSSAVFIMLGAELVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF---SAEG 119
           VGAV V FLF++MMLDI    +  R + G +  + +G+    L      + +F   SA  
Sbjct: 61  VGAVAVLFLFVVMMLDI----SRVRSRHGLVKRYPLGVACMLLFFGCMVYSIFHVKSATI 116

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK--RQDIS 177
             S  V    NV  IG  LYT+YAY  +++G +LL++ +G++VL+       K  +QD+S
Sbjct: 117 GASEGVVGVGNVFLIGSRLYTEYAYAFQLAGVLLLIAGVGSLVLVAGGGDGRKSLKQDVS 176

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           +Q+  +    I ++    G G+
Sbjct: 177 QQIGRSSK--IRLLSPGVGAGV 196


>gi|5042150|emb|CAB44670.1| NDH-G protein [Nostoc sp. PCC 7120]
          Length = 202

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + M I  +  VV   + +YS F L   F++ AG++LLL  +FVA   ++VY
Sbjct: 7   VQVVPFGILATMLIGPALGVVLATSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   +          +      I++  L    S  ++ +     +
Sbjct: 67  VGAVNVLILFAIMLVNKRQDFTP--YPSAGIRKVLTAIVSVGLFALLSTMVLATPWAYST 124

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                  ++  IG+  ++ +  P E++  +LL++M+GAI+L  R 
Sbjct: 125 TPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARRE 169


>gi|302523886|ref|ZP_07276228.1| NADH dehydrogenase subunit J [Streptomyces sp. AA4]
 gi|302432781|gb|EFL04597.1| NADH dehydrogenase subunit J [Streptomyces sp. AA4]
          Length = 275

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 89/201 (44%), Gaps = 3/201 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   ++++ +  ++  RN ++S   L+   +    L++   A F+    ++V
Sbjct: 3   TGEAIAFWILGPLSLLGALGMIFSRNAVHSALWLVLTMLTLGALYMTQSAPFLGFTQIIV 62

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF++M++  D   +     RG   +  +  +    ++ A  F   +     
Sbjct: 63  YTGAIMMLFLFVLMLVGRDSSDSVVEVLRGQRLAAGVLGIGLAALIAAGVFRAMANVTPA 122

Query: 122 SRLVFKGNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
             L            +G++++TQY +P E++  +L+ + +GA+VL    R    +    +
Sbjct: 123 KPLDPYQQTGGGPGGLGRLIFTQYLFPFELTSALLITAALGAMVLAFTGRSGKSKLSQRE 182

Query: 179 QLESNPDNSIVMVKVKSGKGI 199
            ++              G G+
Sbjct: 183 LVKLRFQGKHDRPSPLPGPGV 203


>gi|148266245|ref|YP_001232951.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter
           uraniireducens Rf4]
 gi|146399745|gb|ABQ28378.1| NADH dehydrogenase subunit J [Geobacter uraniireducens Rf4]
          Length = 168

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 1/166 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++SLFF + + +A+ISS LV+T +NPI S  SL+  F   A  +++L A F+A I ++VY
Sbjct: 2   LESLFFIIVAAVAVISSILVITCKNPINSALSLVMTFFCLATFYVMLDAPFMAAIQVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121
            GA++V  +F+IM+L+I  E           GS    ++  +         +   +G + 
Sbjct: 62  AGAIMVLIVFVIMLLNIRTETGRKTTHAILAGSIIGLLVLFQTCYFLFRSSLTGNKGVMD 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           + LV +  +VE IGK LYT++  P EI+  +LL+++IGA++L  R 
Sbjct: 122 TALVERVGHVELIGKALYTEFLLPFEITSLLLLVAIIGAVILTKRK 167


>gi|317968122|ref|ZP_07969512.1| NADH:ubiquinone oxidoreductase subunit J [Synechococcus sp. CB0205]
          Length = 199

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F   S    I +  VV + + +YS F L   F++ AGL+LLL A FVA   ++V
Sbjct: 6   STQFICFVCLSAAVAIGALGVVLLPSIVYSAFLLGGVFLSVAGLYLLLNASFVAAAQVLV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  LF IM+++   ++A        +  F  G + A L          +     
Sbjct: 66  YVGAVNVLILFAIMLVNKKEDLA--AIPGLAVRRFLSGAVCAGLFALLLRVAFTTPWALP 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                       IG+ L++ Y  P E++  +LL++MIGAIVL  R
Sbjct: 124 GPTPIGEEATIRIGEHLFSDYLLPFELASVLLLMAMIGAIVLARR 168


>gi|30265317|ref|NP_847694.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Ames]
 gi|47530855|ref|YP_022204.1| NADH dehydrogenase subunit J [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188130|ref|YP_031383.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Sterne]
 gi|49481260|ref|YP_039285.1| NADH dehydrogenase subunit J [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140267|ref|YP_086563.1| NADH dehydrogenase subunit J [Bacillus cereus E33L]
 gi|65317270|ref|ZP_00390229.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J)
           [Bacillus anthracis str. A2012]
 gi|165870029|ref|ZP_02214686.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0488]
 gi|167636384|ref|ZP_02394684.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0442]
 gi|167641713|ref|ZP_02399957.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0193]
 gi|170689349|ref|ZP_02880543.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0465]
 gi|170708833|ref|ZP_02899268.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0389]
 gi|177654088|ref|ZP_02936098.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0174]
 gi|190567786|ref|ZP_03020698.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036274|ref|ZP_03103672.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus W]
 gi|218906471|ref|YP_002454305.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH820]
 gi|227818057|ref|YP_002818066.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           CDC 684]
 gi|229602758|ref|YP_002869509.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0248]
 gi|254686283|ref|ZP_05150142.1| NADH dehydrogenase subunit J [Bacillus anthracis str. CNEVA-9066]
 gi|254724279|ref|ZP_05186063.1| NADH dehydrogenase subunit J [Bacillus anthracis str. A1055]
 gi|254735222|ref|ZP_05192931.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744426|ref|ZP_05202106.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Kruger B]
 gi|254755730|ref|ZP_05207763.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Vollum]
 gi|254759537|ref|ZP_05211562.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Australia 94]
 gi|30259995|gb|AAP29180.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           Ames]
 gi|47506003|gb|AAT34679.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49182057|gb|AAT57433.1| NADH dehydrogenase I, J subunit [Bacillus anthracis str. Sterne]
 gi|49332816|gb|AAT63462.1| NADH dehydrogenase I, subunit J (NADH-quinone oxidoreductase, chain
           J) [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51973736|gb|AAU15286.1| NADH dehydrogenase I, subunit J (NADH-quinone oxidoreductase, chain
           J) [Bacillus cereus E33L]
 gi|164714352|gb|EDR19872.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0488]
 gi|167510338|gb|EDR85740.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0193]
 gi|167528218|gb|EDR91000.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0442]
 gi|170126233|gb|EDS95125.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0389]
 gi|170666717|gb|EDT17486.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0465]
 gi|172080971|gb|EDT66050.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0174]
 gi|190561202|gb|EDV15175.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991066|gb|EDX55036.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus W]
 gi|218535828|gb|ACK88226.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH820]
 gi|227005897|gb|ACP15640.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           CDC 684]
 gi|229267166|gb|ACQ48803.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str.
           A0248]
          Length = 174

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MNGEFIAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E  
Sbjct: 61  LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESA 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              L     N   IG +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 120 QGSLPLHEKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169


>gi|332708450|ref|ZP_08428426.1| NADH dehydrogenase subunit J [Lyngbya majuscula 3L]
 gi|332352781|gb|EGJ32345.1| NADH dehydrogenase subunit J [Lyngbya majuscula 3L]
          Length = 208

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 1/164 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q +   + S + I ++  VV + N +YS F L   F+  +GL++LL A+FVA   +++Y
Sbjct: 7   VQIISVAILSVIMIGAALGVVLLSNIVYSAFLLAGVFIGISGLYILLNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++   E  +P  KR         +      + ++  +      E+ 
Sbjct: 67  VGAVNVLILFAIMLVN-KREDFQPMTKRWVRTGSTAIVCIGLFALLSTMVLATPWSVEID 125

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +   N    IG+  ++ +  P E++  +LL++M+GAI++  R
Sbjct: 126 PAMVVTNTAVEIGQHFFSDFLLPFELASVLLLMAMVGAIIIARR 169


>gi|327394574|dbj|BAK11996.1| NADH-quinone oxidoreductase chain J NuoJ [Pantoea ananatis AJ13355]
          Length = 200

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + ++ AG+F  LGA F   + ++VY G
Sbjct: 19  EFAFYLCGLVAVVTTLRVITHTNPVHALLYLIVSLLSVAGVFFSLGAYFAGALEIIVYAG 78

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +  ++      +    L + L++    + + +A+ +   +
Sbjct: 79  AIMVLFVFVVMMLNLGKATEKQEREWLSPSLWIGPGLVSFLLLAVMIYAIMTAQDQ--GI 136

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             K  + + +G  L+  Y   +E++  +LL  ++ A  L    R+ 
Sbjct: 137 DGKIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHLGREERQG 182


>gi|291618181|ref|YP_003520923.1| NuoJ [Pantoea ananatis LMG 20103]
 gi|291153211|gb|ADD77795.1| NuoJ [Pantoea ananatis LMG 20103]
          Length = 204

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + ++ AG+F  LGA F   + ++VY G
Sbjct: 23  EFAFYLCGLVAVVTTLRVITHTNPVHALLYLIVSLLSVAGVFFSLGAYFAGALEIIVYAG 82

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +  ++      +    L + L++    + + +A+ +   +
Sbjct: 83  AIMVLFVFVVMMLNLGKATEKQEREWLSPSLWIGPGLVSFLLLAVMIYAIMTAQDQ--GI 140

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             K  + + +G  L+  Y   +E++  +LL  ++ A  L    R+ 
Sbjct: 141 DGKIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHLGREERQG 186


>gi|270267568|ref|YP_003331252.1| NADH dehydrogenase subunit 6 [Dendronephthya gigantea]
 gi|209887406|gb|ACI95028.1| NADH dehydrogenase subunit 6 [Dendronephthya gigantea]
          Length = 185

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 17/187 (9%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F + S   +++SF+V++  NP+YSVF L+ AFVNAA +F+ L  +++ +I ++VYVGA+
Sbjct: 4   LFIIISLGIVVASFMVISTPNPVYSVFWLVIAFVNAAVMFISLELDYIGLIFIIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IM++    +V                 +   +I   S+ +  S +   + ++ 
Sbjct: 64  AILFLFVIMLIQQPNKVYSQDHSHFLP-------VGLSVIFLFSSLLTNSPKYISNPVIG 116

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDI 176
              N+  IG  LYT Y   + I+  +LL++MIGAI+L  +                RQD+
Sbjct: 117 SKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNFYGESLRSRQDL 176

Query: 177 SKQLESN 183
             Q+   
Sbjct: 177 FLQISRE 183


>gi|197120278|ref|YP_002140705.1| NADH dehydrogenase I subunit J [Geobacter bemidjiensis Bem]
 gi|197089638|gb|ACH40909.1| NADH dehydrogenase I, J subunit [Geobacter bemidjiensis Bem]
          Length = 167

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 1/166 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+S+FF + + +A+ISS LVVT +NPI S  SL+  F   A  +++L A F+A   ++VY
Sbjct: 1   MESIFFLVVATVAVISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
            GA++V  +F+IM+L++  E  +      F GS   +  L   +   +   M  +     
Sbjct: 61  AGAIMVLIIFVIMLLNVKAESGKRGSHAVFAGSVLGLFALFQTVWFLSKGSMTGATGTMD 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              +    +VE IGK L+T +  P EI+  +LL +++GA++L  + 
Sbjct: 121 KAQIISVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVILAKKK 166


>gi|222053579|ref|YP_002535941.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           FRC-32]
 gi|221562868|gb|ACM18840.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           FRC-32]
          Length = 168

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 1/166 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++SLFF + + +A+ISS LV+T RNPI S  SL+  F   A  +++L A F+A I ++VY
Sbjct: 2   LESLFFLIVAAVAVISSILVITCRNPINSALSLVMTFFCLATFYVMLDAPFMAAIQVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
            GA++V  +F+IM+L+I  E           GS   + IL           M        
Sbjct: 62  AGAIMVLIVFVIMLLNIRTETGRKTTHAVLAGSIVGLLILFQTCYFLTKGSMTGLTGAMD 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           + L+ K  +VE IGK LYT +  P EI+  +LL+++IGA++L  R 
Sbjct: 122 TALIEKVGHVELIGKALYTDFLLPFEITSLLLLVAIIGAVILSKRK 167


>gi|169629229|ref|YP_001702878.1| NADH dehydrogenase subunit J [Mycobacterium abscessus ATCC 19977]
 gi|169241196|emb|CAM62224.1| NADH-quinone oxidoreductase, J subunit NuoJ [Mycobacterium
           abscessus]
          Length = 259

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 76/167 (45%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F++   +A++ +  V+     +YS   L    V  A  F+  GA F+ +  +VV
Sbjct: 23  TWEGVTFWVLGAIAVLGALGVIAAPKAVYSAIFLAMTMVILAVFFVAQGALFLGVAQVVV 82

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M + +D   +      G         L   ++  AS     +     
Sbjct: 83  YTGAVMMLFLFVLMFVGVDSSDSLVETLPGQRVGAVAAGLGFGILAIASIGNASTTVFVG 142

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                   NVE + + ++  Y +  E++G +L+ + IGA+VL  R +
Sbjct: 143 LGQANSRGNVEGLAERIFIDYLWAFELTGALLITATIGAMVLAHREK 189


>gi|229821700|ref|YP_002883226.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beutenbergia
           cavernae DSM 12333]
 gi|229567613|gb|ACQ81464.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beutenbergia
           cavernae DSM 12333]
          Length = 286

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 92/174 (52%), Gaps = 4/174 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++ + + +I++  ++  R  +++  S++F  V  A L+  L A F+ +  +VV
Sbjct: 9   TGEAVLFWVLAPLMVIAALGLLFARKAVHAAISVVFVMVALAFLYTALEAPFLGVAQVVV 68

Query: 62  YVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           Y GAV+  F+F++M++ +D    V E  + + ++   F   LA+ LI   +   +  A+G
Sbjct: 69  YTGAVMTLFVFVLMLVGVDASDSVVETLQGQRWIAVLFGVGLASVLIGVIATATLPDAQG 128

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                V    N   + ++++ Q+ +  E+ G +L+ + +GAI L  R R   KR
Sbjct: 129 LAE--VNTDGNPVGVARLIFGQFVFAFELVGALLITAALGAITLTHRERLGRKR 180


>gi|56791570|gb|AAW30323.1| NADH dehydrogenase subunit 6 [Pinus thunbergii]
          Length = 186

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++     I  F N +GL +LLG +  AMI+ VV++GA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHPASFPIPVFRNTSGLLILLGPDLPAMISPVVHIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124
           + V  L ++MML++ I     +  R    S  IG++   E+     N  + S    +S  
Sbjct: 61  IAVSSLPVVMMLNMKIAEIHEKVSRYPPVSGIIGLILRWEMFFIPDNDHIPSLPTCISTT 120

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                     +    N E  G  L+T Y+    +S  I  ++MIGA VL +     +KRQ
Sbjct: 121 SLRYTVHAGEIQSWTNSETSGNSLHTYYSVRFSVSSPIPSVAMIGATVLTMHRTTRVKRQ 180

Query: 175 DISKQL 180
           D+ ++ 
Sbjct: 181 DVFRRN 186


>gi|47569789|ref|ZP_00240460.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10), putative
           [Bacillus cereus G9241]
 gi|47553531|gb|EAL11911.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10), putative
           [Bacillus cereus G9241]
          Length = 174

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 91/170 (53%), Gaps = 1/170 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S  AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MNGEFIAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   + E       R ++  FF  +    ++  A N + F+ E  
Sbjct: 61  LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              L     N   IG +LY++Y  P E+   ILL++++GAI+L  +  ++
Sbjct: 120 QGSLPLHEKNTLQIGTLLYSKYIIPFELISVILLVALVGAIILAKKDEKE 169


>gi|312131903|ref|YP_003999243.1| NADH dehydrogenase subunit j [Leadbetterella byssophila DSM 17132]
 gi|311908449|gb|ADQ18890.1| NADH dehydrogenase subunit J [Leadbetterella byssophila DSM 17132]
          Length = 178

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 93/166 (56%), Gaps = 1/166 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FY F+ +A+  +   +  + P++SV +LI  F + +G+++LL A+F+A++ ++VY
Sbjct: 9   MVEWVFYFFAVLALCGALGTILSKKPMHSVIALIITFFSLSGIYVLLNAQFLAVVNIIVY 68

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IM L++  E  E R     L +   G++   ++V       F+    ++
Sbjct: 69  AGAIMVLFLFVIMFLNLRQESNELRNTPMILAATISGLILVLMLVAVYRKAYFAPVNPVT 128

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                G  +EN+G +LY  Y  P E+   + L+++ GAI++  R +
Sbjct: 129 FRAETGM-IENLGTLLYRHYMLPFELVSVLFLVAISGAILIGKREK 173


>gi|289667370|ref|ZP_06488445.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 194

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 4/193 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ FY FS +A++S+  V++VRNP+Y+V  LI  F + A ++LL+GAEF+ +  ++
Sbjct: 2   MDWVTIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           VYVGAV+V FLF++MMLDID         +       + +     +V        SA   
Sbjct: 62  VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRSATPF 121

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
                +      +N+  + K LYT++  P E +  IL ++++ A++L LR R  IK Q+ 
Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181

Query: 177 SKQLESNPDNSIV 189
            +Q      + + 
Sbjct: 182 GEQSRVKAGDRLR 194


>gi|327325777|gb|EGE67569.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL103PA1]
          Length = 284

 Score =  127 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--- 118
           Y GA+++ FLF++M++ +D   +     +G   +  I  LA  +++  +     + +   
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNTVTTDVIG 135

Query: 119 -----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
                G        GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKKKS 195

Query: 172 KRQDISKQLESNPD 185
           +R+ ++ ++ +  +
Sbjct: 196 QRERVTDRMAAYAE 209


>gi|311741751|ref|ZP_07715562.1| NADH-quinone oxidoreductase subunit J [Aeromicrobium marinum DSM
           15272]
 gi|311314757|gb|EFQ84663.1| NADH-quinone oxidoreductase subunit J [Aeromicrobium marinum DSM
           15272]
          Length = 255

 Score =  127 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 95/195 (48%), Gaps = 4/195 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++ + + ++++  +V  R  +++   L    ++ A L+ + GA F+  + ++VY GA++
Sbjct: 4   FWILAPIMVLAALGLVFSRKAVHAALWLAVVMISLAVLYAVQGAPFLFAVQIIVYTGAIM 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           + FLF++M++ ++ +++     +G   G+  +G+L   L+V     +       L     
Sbjct: 64  MLFLFVVMLVGVESDLSLTETIKGQRAGAIVVGLLFGVLLVIGVGQVSVGPVTGLDEANA 123

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDISKQLESNP 184
            G NV  +  +++  +    + +  +L+ +++GA+VL  R R    + + D++ +   + 
Sbjct: 124 NG-NVYGLAALMFGPFVLAFQFTAALLVTAVLGAMVLAHRERLTPRLTQADLAARRMRDY 182

Query: 185 DNSIVMVKVKSGKGI 199
             +          G+
Sbjct: 183 AETGRHPGNAPTPGV 197


>gi|333025110|ref|ZP_08453174.1| putative NADH dehydrogenase subunit J [Streptomyces sp. Tu6071]
 gi|332744962|gb|EGJ75403.1| putative NADH dehydrogenase subunit J [Streptomyces sp. Tu6071]
          Length = 261

 Score =  127 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 73/148 (49%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82
           + +   ++S   L    +  A  +L  GA F+ ++ +VVY GAV++ FLF++M++ +   
Sbjct: 1   MLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYTGAVMMLFLFVVMLVGVTAA 60

Query: 83  VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142
            +     +G      +  L    ++         ++ + +     G NV+ + + ++T Y
Sbjct: 61  DSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQGTGRANAGGNVQGLAREIFTTY 120

Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +  EI+G +L+ + +GA+VL  R R +
Sbjct: 121 VFAFEITGALLITATVGAMVLTHRERTE 148


>gi|86606291|ref|YP_475054.1| NADH dehydrogenase subunit J [Synechococcus sp. JA-3-3Ab]
 gi|86554833|gb|ABC99791.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6
           [Synechococcus sp. JA-3-3Ab]
          Length = 202

 Score =  127 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + S MAI  +  VV   N +YS F L   F++ AGL+LLL A+FVA   +++Y
Sbjct: 7   VQLVTFGVLSAMAIGFALGVVWAPNIVYSGFLLGGVFLSMAGLYLLLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++     A    K G+L +     +   L    +   + +      
Sbjct: 67  VGAVNVLILFAIMLVNRRYTFAP--LKLGWLRNGVTAAVCLGLFALLTAMALNTPW--QL 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +   ++   +G   ++ Y  P E++  +LL+++IGAIVL  R 
Sbjct: 123 EPIQPTSSALVMGGHFFSDYLLPFELASVLLLMALIGAIVLARRE 167


>gi|282855265|ref|ZP_06264597.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes J139]
 gi|282581853|gb|EFB87238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes J139]
 gi|314983069|gb|EFT27161.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL110PA3]
 gi|315090602|gb|EFT62578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL110PA4]
 gi|315093911|gb|EFT65887.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL060PA1]
 gi|315104130|gb|EFT76106.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL050PA2]
          Length = 284

 Score =  127 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +     G
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTDVIG 135

Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
               +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKKKS 195

Query: 172 KRQDISKQLESNPD 185
           +R+ ++ ++ +  +
Sbjct: 196 QRERVTDRMAAYAE 209


>gi|148657104|ref|YP_001277309.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus
           sp. RS-1]
 gi|148569214|gb|ABQ91359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus
           sp. RS-1]
          Length = 215

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 2/174 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            + ++ F +F+   ++++ + VTV+N +++   LI +F     L+LL+ AEF+ +  +++
Sbjct: 3   TLITILFLVFAVFILVAAIMTVTVKNIVHAALWLISSFFGVGALYLLMEAEFLGVAQVLI 62

Query: 62  YVGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEG 119
           YVGAV +  LF IM+  D++         R ++       L   LIV       +     
Sbjct: 63  YVGAVSILILFAIMLTRDLEGSQNRQLTPRWWIALLVPAALFGLLIVPTVMTHAWQLPPP 122

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             +      +  + IG     +Y  P E++  +LL++MIGAIV+    R   +R
Sbjct: 123 PPAGQPPSISGAQQIGTAFMREYLLPFEVAAILLLVAMIGAIVVAFEEREQRRR 176


>gi|257852720|gb|ACV71372.1| NADH dehydrogenase subunit 6 [Lepidobotrys staudtii]
          Length = 169

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 28  PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87
           P++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I I      
Sbjct: 1   PVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEE 60

Query: 88  KKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGELSRL----------VFKGNNVENIGK 136
             R    S  IG++   E+     N  +     + +            V    N+E +G 
Sbjct: 61  VLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGN 120

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
           +LYT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 LLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 168


>gi|54024628|ref|YP_118870.1| NADH dehydrogenase subunit J [Nocardia farcinica IFM 10152]
 gi|54016136|dbj|BAD57506.1| putative NADH dehydrogenase I chain J [Nocardia farcinica IFM
           10152]
          Length = 274

 Score =  127 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 92/185 (49%), Gaps = 4/185 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++ + +A++ +  +V     ++S   L    +  A +++   A F+ ++ +VV
Sbjct: 15  TGEAVQFWILAPLAVLGALGMVFAAKAVHSAICLAATMIALAVMYIAQDALFLGVVQIVV 74

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGE 120
           Y GAV++ FLF++M++ +D   +     RG  + +  +GI    L++      +  +   
Sbjct: 75  YTGAVMMLFLFVLMLVGVDSAESLRETLRGQRIAATVVGIGFGLLLMAGIGIGIRESGVT 134

Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
                F G + +  + ++++ +Y +  E++G +L+ + IGA+VL   HR     +   ++
Sbjct: 135 FPATGFPGRDVIAELAELIFLRYVWAFELTGALLITATIGAMVLA--HRDHFGARTTQRE 192

Query: 180 LESNP 184
           L    
Sbjct: 193 LSRRR 197


>gi|314923985|gb|EFS87816.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL001PA1]
          Length = 284

 Score =  127 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +     G
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTDVIG 135

Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
               +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKKKS 195

Query: 172 KRQDISKQLESNPD 185
           +R+ ++ ++ +  +
Sbjct: 196 QRERVTDRMAAYAE 209


>gi|152977481|ref|YP_001376998.1| NADH dehydrogenase subunit J [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152026233|gb|ABS24003.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           cytotoxicus NVH 391-98]
          Length = 174

 Score =  127 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 1/170 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ SF A++    ++ V   ++ + +L+F F++ AGL+ LL AEF+ +  ++
Sbjct: 1   MTGELIAFFILSFTAVMGGVFMLNVTKVMHMMLALVFTFLSIAGLYFLLAAEFIGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  +F IM+   D E       R  +  F   +L   ++  A + + F+ +  
Sbjct: 61  IYSGAITIIMIFGIMLTRHDAENESRISLRKII-VFLAVMLFGTVMYFAVHNIDFANQNT 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              L     N   IG +LY++Y  P E++  ILL++++GAIVL  +    
Sbjct: 120 QDILPLHEQNTLQIGTLLYSKYVIPFELASVILLVALVGAIVLAKKDEEK 169


>gi|95928437|ref|ZP_01311185.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135708|gb|EAT17359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Desulfuromonas acetoxidans DSM 684]
          Length = 170

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 97/166 (58%), Gaps = 1/166 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q  FFYL +F+A++S F V++ +NPI S  SL+  F   A  +++L A F+A + ++VY
Sbjct: 4   LQLFFFYLVAFVAVVSGFCVISCKNPINSAISLVMTFFCLAIFYVMLHAPFMAAVQIMVY 63

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V  +F++M+L+   EV    +        F  ++  +++V   +  V    G ++
Sbjct: 64  AGAIMVLIIFVMMLLNQGSEVIARYRHAVTGAFIFAIVMLVQIVVILKDGGVSGPVGPIN 123

Query: 123 -RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +V    +VE IGK ++T +  P EI+  +LL++++GA+VL  R 
Sbjct: 124 GDVVQSVGHVELIGKAMFTDFLLPFEIASILLLVAIVGAVVLAKRE 169


>gi|228994013|ref|ZP_04153915.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus pseudomycoides
           DSM 12442]
 gi|229000082|ref|ZP_04159652.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides
           Rock3-17]
 gi|228759619|gb|EEM08595.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides
           Rock3-17]
 gi|228765811|gb|EEM14463.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus pseudomycoides
           DSM 12442]
          Length = 170

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 1/165 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F+L S  AII   L++ +   ++ + +L+F F++ AGL+ LL AEFV +  +++Y GA
Sbjct: 2   IAFFLLSLTAIIGGILMLNLTKVMHMMLALVFTFLSIAGLYFLLSAEFVGVAQILIYSGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + +  +F IM+   D E       R +L  FF  ++   ++  A N + F+       + 
Sbjct: 62  ITIIMIFGIMLTKHDAENESSFSFRKWL-IFFAVVVFGGVMYFAVNNIDFTNRSVQGSVP 120

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
               N   IG +LY++Y  P E++  ILL++++GAIVL  +  ++
Sbjct: 121 LHEQNTLQIGTLLYSKYVIPFELTSVILLVALVGAIVLAKKDEKE 165


>gi|124515807|gb|EAY57316.1| putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum
           rubarum]
          Length = 169

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 91/163 (55%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ   F  F    +IS+  VV  RNPIYSV SL+  F++ AGL+++L AEF+A + L+VY
Sbjct: 1   MQMAMFGYFGAAIVISALFVVYFRNPIYSVMSLLTMFMHIAGLYVILEAEFLAGVQLLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V +LF++M+L++       +K+   +    I  +   + +               
Sbjct: 61  AGAILVLYLFVVMLLNVQSRGRFIQKQTPAVVGLGILGIVEVVALIFHTRFYPELPAIPH 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
             V    N E IG VLYTQY +P EI+  +LL++++GAIVL  
Sbjct: 121 PGVPTLGNTETIGMVLYTQYLFPFEIASLVLLIALVGAIVLAK 163


>gi|312139317|ref|YP_004006653.1| NADH dehydrogenase (quinone) chain j nuoj [Rhodococcus equi 103S]
 gi|325676674|ref|ZP_08156349.1| NADH-quinone oxidoreductase subunit J [Rhodococcus equi ATCC 33707]
 gi|311888656|emb|CBH47968.1| NADH dehydrogenase (quinone) chain J NuoJ [Rhodococcus equi 103S]
 gi|325552529|gb|EGD22216.1| NADH-quinone oxidoreductase subunit J [Rhodococcus equi ATCC 33707]
          Length = 276

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 17/209 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++    A++ +  VV     +YS   L    +  A L++  GA F+ ++ +VV
Sbjct: 22  TGEAVQFWILGTAAVLGALGVVCAPKAVYSAICLAMTMIVLAVLYIAQGALFLGVVQVVV 81

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-----------AELIVCAS 110
           Y GAV++ FLF++M++ +D   +     RG   +  +  L            A + V  S
Sbjct: 82  YTGAVMMLFLFVLMLIGVDSSDSLVETLRGQRIAAVVAGLGFGLLLIGGLGNATVGVLRS 141

Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-- 168
             + F    + +     G NVE I ++++ +Y +  E++G +L+ + IGA+VL  R R  
Sbjct: 142 GEVGFVGLDQANS--ASGGNVEGIAELVFIRYVWVFEMTGALLITATIGAMVLAHRERFE 199

Query: 169 RDIKRQDISKQLESN--PDNSIVMVKVKS 195
           R + ++++SKQ   +   D S  +  + S
Sbjct: 200 RRLGQREMSKQRFRDWGADESARVTPLPS 228


>gi|253702586|ref|YP_003023775.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M21]
 gi|251777436|gb|ACT20017.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M21]
          Length = 167

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 1/166 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+S+FF + + +A+ISS LVVT +NPI S  SL+  F   A  +++L A F+A   ++VY
Sbjct: 1   MESIFFLVVAAVAVISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
            GA++V  +F+IM+L++  E  +        GS   +  L   +   +   M  +     
Sbjct: 61  AGAIMVLIIFVIMLLNVKAESGKRGSHAVIAGSVLGLFALFQTVWFISKGSMTGATGTMD 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              +    +VE IGK L+T +  P EI+  +LL +++GA++L  + 
Sbjct: 121 KAQIVSVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVILAKKK 166


>gi|163848449|ref|YP_001636493.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus aurantiacus J-10-fl]
 gi|222526377|ref|YP_002570848.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus sp. Y-400-fl]
 gi|163669738|gb|ABY36104.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450256|gb|ACM54522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           sp. Y-400-fl]
          Length = 168

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 89/167 (53%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F + + +AII +  ++  RN ++S   L+  F   A LFLLL A F+  I L VY
Sbjct: 1   MELILFLITALIAIIGAVAMLVSRNAVHSALFLLLNFAAIAVLFLLLNAPFLFAIQLTVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF++M+L  +     P +         +  LA  +I         +     S
Sbjct: 61  AGAIMVLFLFVVMLLGAEKVEDTPDQIPWQQPLALLLGLALLVISVVVGLGGATNPPPES 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             + + ++ + +G +L+T Y  P E++GFILL+++IG +VL  R R+
Sbjct: 121 EALAQFSDPQTLGALLFTDYLLPFEVTGFILLIAVIGVVVLNQRGRK 167


>gi|22298211|ref|NP_681458.1| NADH dehydrogenase subunit J [Thermosynechococcus elongatus BP-1]
 gi|22294390|dbj|BAC08220.1| NADH dehydrogenase subunit 6 [Thermosynechococcus elongatus BP-1]
          Length = 200

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++ F+  +   II++  VV + N +YS F L   F++ AGL++L+ A+FV+   +++YV
Sbjct: 8   QTITFFALAAAVIIAALGVVLLDNVVYSAFLLGGVFLSIAGLYILMNADFVSAAQILIYV 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV V  LF IM+++             +L      +++  +    +  M+     +LS 
Sbjct: 68  GAVNVLILFAIMLVNKRETYTP--VPGRWLRQGGAAVVSLGVFALLTK-MILQTPWQLSS 124

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +    +++  IG+  ++ +  P E++  +LL+++IGA+VL  R 
Sbjct: 125 VPPTPDSITTIGQHFFSDFLLPFELASVLLLMALIGAVVLARRE 168


>gi|86608754|ref|YP_477516.1| NADH dehydrogenase subunit J [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557296|gb|ABD02253.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 202

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + S MAI  +  VV   + +YS F L   F++ AGL+LLL A+FVA   +++Y
Sbjct: 7   VQLVTFVVLSAMAIGFALGVVWAPSIVYSGFLLGGVFLSMAGLYLLLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF IM+++     A    K G+L +    ++   L    +   + +      
Sbjct: 67  VGAVNVLILFAIMLVNRRYNFAP--LKLGWLRNGVTAVVCLGLFALLAAMALNTPWPL-- 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           + +   ++V  IG   ++ Y  P E++  +LL+++IGAIVL  R 
Sbjct: 123 QPIQPLSSVLVIGGHFFSDYLLPFELASVLLLMALIGAIVLARRE 167


>gi|209522710|ref|ZP_03271268.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arthrospira
           maxima CS-328]
 gi|209496759|gb|EDZ97056.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arthrospira
           maxima CS-328]
          Length = 208

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 2/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F L + M I S+  VV ++N +YS F L   F++ AGL+LLL A+FVA   +++Y
Sbjct: 9   VQVVSFGLLTIMMIGSALGVVLLKNIVYSAFLLGGVFMSMAGLYLLLNADFVAAAQVLIY 68

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VG+V V  LF IM+++   +          L      ++   L    S  ++ +     +
Sbjct: 69  VGSVNVLILFGIMLVNKQQDFR--VLPNAGLRQIATAVVCVGLFALLSTMVLSTPWSVTT 126

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +V   ++   IG+  +T +  P E++   LL++M+GAIVL  R
Sbjct: 127 TVVTIESSAIAIGEHFFTDFLLPFELASVFLLMAMVGAIVLARR 170


>gi|254796410|ref|YP_003081246.1| NADH dehydrogenase i, j subunit [Neorickettsia risticii str.
           Illinois]
 gi|254589647|gb|ACT69009.1| NADH dehydrogenase i, j subunit [Neorickettsia risticii str.
           Illinois]
          Length = 189

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 111/195 (56%), Gaps = 12/195 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +  +L   +AI SSF VV+ RN +++V  L+ AF  ++ L L  G E ++++ LVVYVGA
Sbjct: 3   ILCFLLVLVAIFSSFRVVSCRNVVHAVLYLVLAFFTSSVLLLAAGLEVLSLMLLVVYVGA 62

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           + + FLF++MML+ D  +         ++G  FI +L   L++         +  + ++ 
Sbjct: 63  IAILFLFVVMMLNSDDFKKGVEMSVAKYVGLLFIALLPFFLVL---------SSYDDTQQ 113

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
                ++++IG VLYT Y Y   +SG +LLL+M+ AI + L  + D K Q + +Q+  + 
Sbjct: 114 ERTYVSIKDIGAVLYTDYVYLFHLSGVVLLLAMVAAISIALPSKSDTKCQVVREQISRS- 172

Query: 185 DNSIVMVKVKSGKGI 199
            + + ++ V SGKG+
Sbjct: 173 -SVVRLLNVPSGKGV 186


>gi|206602051|gb|EDZ38533.1| Putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum
           sp. Group II '5-way CG']
          Length = 169

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 90/163 (55%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ   F  F    +IS+  VV  RNPIYSV SL+  F++ AGL+++L AEF+A + L+VY
Sbjct: 1   MQMAMFGYFGAAIVISALFVVYFRNPIYSVMSLLTMFMHIAGLYVILEAEFLAGVQLLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V +LF++M+L++       +K+   +    I  +     +               
Sbjct: 61  AGAILVLYLFVVMLLNVQSRGRFIQKQTPVVVGLGILGIVEVAALIFRTRFYPELPAIPH 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
             V    N E IG VLYTQY +P EI+  +LL++++GAIVL  
Sbjct: 121 PGVPTLGNTETIGMVLYTQYLFPFEIASLVLLIALVGAIVLAK 163


>gi|251773158|gb|EES53711.1| putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum
           ferrodiazotrophum]
          Length = 173

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 1/168 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q L F+ F  MA++ + LVVT R  IYS  +L+  FV+ AGLF++L A F+A + L+VY
Sbjct: 2   IQQLPFFYFGGMALVCAILVVTSRVAIYSAMALLGMFVHVAGLFIILEAPFLAGVQLLVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGEL 121
            GA++V +LF++M+L++    A   +K+         I   EL         +       
Sbjct: 62  AGAILVLYLFVVMLLNLQGGGATSLQKQTPWAIALSLIAVGELGYLLVKTNFYPKLPAIP 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              V    N E IG VLYTQY +P E++  +LL++++GAIV+     R
Sbjct: 122 HPSVPTLGNTETIGMVLYTQYLFPFEVASIVLLIALVGAIVMARGRGR 169


>gi|109156463|ref|YP_654358.1| NADH dehydrogenase subunit 6 [Mussa angulosa]
 gi|109156491|ref|YP_654345.1| NADH dehydrogenase subunit 6 [Colpophyllia natans]
 gi|108744096|gb|ABG02319.1| NADH dehydrogenase subunit 6 [Colpophyllia natans]
 gi|108744110|gb|ABG02332.1| NADH dehydrogenase subunit 6 [Mussa angulosa]
          Length = 186

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 8/187 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++L F  F    I+S  +VV+  NP+ S+F L+  FVN+A  FL L  +F+A++ L+VY
Sbjct: 1   MEALIFCFF-LSTIVSGIMVVSALNPVLSIFWLVLVFVNSAVFFLWLEVDFLALMFLLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--CASNFMVF----- 115
           VGA+ V FLF++M+L++       R++        +G L         AS++ +      
Sbjct: 60  VGAIAVLFLFVVMLLNLTDYPPVFREEVDMTNYMPVGFLIGGFFFSEIASSWSIIFPRVE 119

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           S +      +   +N+E +G+VLY        ++GF+LL++M+G IVL        K+QD
Sbjct: 120 SWDLSFPWFLVSYHNIEALGQVLYIPCFCLFFLAGFVLLVAMVGVIVLTQELEPLTKKQD 179

Query: 176 ISKQLES 182
           +  Q+  
Sbjct: 180 LFIQINR 186


>gi|91203928|emb|CAJ71581.1| similar to NADH dehydrogenase I subunit J [Candidatus Kuenenia
           stuttgartiensis]
          Length = 169

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 97/171 (56%), Gaps = 9/171 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+ +  +++++  ++  +NPIY    L+F+F+N A L++LL A+F+A + ++VY
Sbjct: 1   MEPYLFYVMAATSVVAALYLIFEKNPIYCALYLVFSFLNIAVLYVLLEAQFIAAVQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120
            GA++V FLF+IM+L  +   +E ++K G        ++   +++      + S   +  
Sbjct: 61  TGAIMVLFLFVIMLLMTN---SEQKQKDGLPFQRIPAMVLGLVLLIIMGLTIKSKLFQGR 117

Query: 121 ----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                S  V    + + +GK+L+T Y  P E++  +L +++IGAI+L  R 
Sbjct: 118 EGIYTSAKVESIGHTQLVGKLLFTDYLLPFEMTSVLLFVAVIGAIILAKRK 168


>gi|296140860|ref|YP_003648103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tsukamurella
           paurometabola DSM 20162]
 gi|296028994|gb|ADG79764.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tsukamurella
           paurometabola DSM 20162]
          Length = 256

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 3/171 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ +  A++ +  VV     +YS   L    +  A  +L  GA F+ ++ +V
Sbjct: 1   MTGEEVAFWVVAVPAVLFALGVVVASKAVYSALCLAATMILLAVAYLSQGAMFLGVVQVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG 119
           VY GAV++ FLF++M++ +D   +     RG  + +   G     L+V      V     
Sbjct: 61  VYTGAVMMLFLFVVMLVGVDSSDSLVETLRGHRVAAAVAGTGFGLLLVTLLARAVLPVPR 120

Query: 120 ELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            +  +  +   N+VE +   ++ +Y +  E++  +L+ + +GA++L  R +
Sbjct: 121 PVDGVAPQYPPNSVEALADTVFVRYVWAFELTAALLITATLGAMILAHREK 171


>gi|289425611|ref|ZP_06427383.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes SK187]
 gi|289427016|ref|ZP_06428735.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes J165]
 gi|289153912|gb|EFD02605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes SK187]
 gi|289159838|gb|EFD08023.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes J165]
 gi|313763293|gb|EFS34657.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL013PA1]
 gi|313802890|gb|EFS44103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL110PA2]
 gi|313806336|gb|EFS44852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL087PA2]
 gi|313813683|gb|EFS51397.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL025PA1]
 gi|313814967|gb|EFS52681.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL059PA1]
 gi|313819447|gb|EFS57161.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL046PA2]
 gi|313821253|gb|EFS58967.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL036PA1]
 gi|313822292|gb|EFS60006.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL036PA2]
 gi|313826150|gb|EFS63864.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL063PA1]
 gi|313829361|gb|EFS67075.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL063PA2]
 gi|313838158|gb|EFS75872.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL086PA1]
 gi|314916747|gb|EFS80578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL005PA4]
 gi|314919127|gb|EFS82958.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL050PA1]
 gi|314921207|gb|EFS85038.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL050PA3]
 gi|314925999|gb|EFS89830.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL036PA3]
 gi|314930365|gb|EFS94196.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL067PA1]
 gi|314956148|gb|EFT00544.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL027PA1]
 gi|314959681|gb|EFT03783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL002PA1]
 gi|314962255|gb|EFT06356.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL002PA2]
 gi|314963231|gb|EFT07331.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL082PA1]
 gi|314969774|gb|EFT13872.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL037PA1]
 gi|314979340|gb|EFT23434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL072PA2]
 gi|314986328|gb|EFT30420.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL005PA2]
 gi|314988575|gb|EFT32666.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL005PA3]
 gi|315079692|gb|EFT51680.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL053PA2]
 gi|315083917|gb|EFT55893.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL027PA2]
 gi|315085054|gb|EFT57030.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL002PA3]
 gi|315089483|gb|EFT61459.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL072PA1]
 gi|315098095|gb|EFT70071.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL059PA2]
 gi|315102687|gb|EFT74663.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL046PA1]
 gi|315108829|gb|EFT80805.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL030PA2]
 gi|327325718|gb|EGE67515.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL096PA3]
 gi|327447749|gb|EGE94403.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL013PA2]
 gi|327451640|gb|EGE98294.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL087PA3]
 gi|327452293|gb|EGE98947.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL083PA2]
 gi|328752126|gb|EGF65742.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL025PA2]
 gi|328755070|gb|EGF68686.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL020PA1]
 gi|328757018|gb|EGF70634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL087PA1]
          Length = 284

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +     G
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGVIG 135

Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
               +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195

Query: 172 KRQDISKQLESNPD 185
           +R+ ++ ++ +  +
Sbjct: 196 QRERVTDRMAAYAE 209


>gi|332676320|gb|AEE73136.1| NADH-quinone oxidoreductase subunit J [Propionibacterium acnes 266]
          Length = 284

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +     G
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILVVGNAVTTGVIG 135

Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
               +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195

Query: 172 KRQDISKQLESNPD 185
           +R+ ++ ++ +  +
Sbjct: 196 QRERVTDRMAAYAE 209


>gi|327333131|gb|EGE74858.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL097PA1]
          Length = 284

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +     G
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGVIG 135

Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
               +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDHPVGLGQANAAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195

Query: 172 KRQDISKQLESNPD 185
           +R+ ++ ++ +  +
Sbjct: 196 QRERVTDRMAAYAE 209


>gi|313793599|gb|EFS41639.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL110PA1]
 gi|327452510|gb|EGE99164.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL092PA1]
          Length = 284

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +     G
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGVIG 135

Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
               +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195

Query: 172 KRQDISKQLESNPD 185
           +R+ ++ ++ +  +
Sbjct: 196 QRERVTDRMAAYAE 209


>gi|196249744|ref|ZP_03148440.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. G11MC16]
 gi|196210620|gb|EDY05383.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. G11MC16]
          Length = 173

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 1/172 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + F+L +  AI     ++ + N ++ V +L+  F+  AGL++LL AEFVA++ ++
Sbjct: 1   MSGTDIAFFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  LF IM+     +  E +   G        I +      A  F +   +  
Sbjct: 61  IYSGAITIIMLFAIMLTRHHADDKERQTTGGVWHRAVAAI-SVLAFGLAVYFGIRRLDFG 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                   +N   IGK LY+ Y  P EI   ILL+++IGAIVL  +  +  +
Sbjct: 120 ADGSALATDNAREIGKWLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAE 171


>gi|322421841|ref|YP_004201064.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M18]
 gi|320128228|gb|ADW15788.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M18]
          Length = 167

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 1/166 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+S+FF + + +AIISS LVVT +NPI S  SL+  F   A  +++L A F+A   ++VY
Sbjct: 1   MESIFFLVVAAVAIISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS-FFIGILAAELIVCASNFMVFSAEGEL 121
            GA++V  +F+IM+L++ +E  +        GS   + IL   +       M        
Sbjct: 61  AGAIMVLIIFVIMLLNVRVETVKRGTHAVLAGSALGLFILFQTIWFLMKGSMTGQVGDMT 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              +    +VE IGK L+T +  P EI+  +LL +++GA++L  + 
Sbjct: 121 KEQIVSVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVILAKKK 166


>gi|295131451|ref|YP_003582114.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes SK137]
 gi|291376680|gb|ADE00535.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes SK137]
 gi|313773339|gb|EFS39305.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL074PA1]
 gi|313810758|gb|EFS48472.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL083PA1]
 gi|313831069|gb|EFS68783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL007PA1]
 gi|313833199|gb|EFS70913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL056PA1]
 gi|314973947|gb|EFT18043.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL053PA1]
 gi|314976875|gb|EFT20970.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL045PA1]
 gi|314984997|gb|EFT29089.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL005PA1]
 gi|315081020|gb|EFT52996.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL078PA1]
 gi|315097698|gb|EFT69674.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL038PA1]
 gi|327330834|gb|EGE72579.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL096PA2]
 gi|327442873|gb|EGE89527.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL043PA2]
 gi|327445265|gb|EGE91919.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL043PA1]
 gi|328761554|gb|EGF75072.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL099PA1]
          Length = 284

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +     G
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGVIG 135

Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
               +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDHPVGLGQASTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195

Query: 172 KRQDISKQLESNPD 185
           +R+ ++ ++ +  +
Sbjct: 196 QRERVTDRMAAYAE 209


>gi|138896927|ref|YP_001127380.1| NADH dehydrogenase subunit J [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268440|gb|ABO68635.1| NADH dehydrogenase I, J subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 173

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 1/172 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + F+L +  AI     ++ + N ++ V +L+  F+  AGL++LL AEFVA++ ++
Sbjct: 1   MSGTDIAFFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  LF IM+     +  E +   G        I +      A  F +   +  
Sbjct: 61  IYSGAITIIMLFAIMLTRHHADDKERQTTGGVWHRAVAAI-SVLAFGLAVYFGIRRLDFG 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                   +N   IGK LY+ Y  P EI   ILL+++IGAIVL  +  +  +
Sbjct: 120 ADGSALAADNAREIGKWLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAE 171


>gi|300864217|ref|ZP_07109101.1| NADH dehydrogenase subunit J [Oscillatoria sp. PCC 6506]
 gi|300337791|emb|CBN54247.1| NADH dehydrogenase subunit J [Oscillatoria sp. PCC 6506]
          Length = 209

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F L + M I ++  VV   N +YS F L   F++ AG++LLL A+FVA   +++Y
Sbjct: 7   VQIVSFGLLAVMMIAAALGVVLFSNIVYSAFLLAGVFMSIAGIYLLLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121
           VGAV V  LF IM+++   +         ++      ++   L       ++ +      
Sbjct: 67  VGAVNVLILFAIMLVNKREDFR--AISNAWVRKAATAVVCVALFALLGTMVLSTPWAIST 124

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           + L    +++  IGK  +T +  P E++   LL++M+GAI+L  R
Sbjct: 125 ATLPAGESSIVVIGKHFFTDFLLPFELASVFLLMAMVGAIILARR 169


>gi|258593428|emb|CBE69767.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           (NDH-1, chain J) [NC10 bacterium 'Dutch sediment']
          Length = 168

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 97/168 (57%), Gaps = 4/168 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L F   + MA++++ LV+ +RNP+Y   SL+  F+  +G++LLL A+F+A++ ++VY
Sbjct: 1   MEWLVFVPLAAMALVTAALVIVLRNPVYCALSLVGTFLALSGIYLLLQAQFIAVVQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIE----VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
            GA++V FLF++M+LD+  E    +   R +          +L    I   SN       
Sbjct: 61  AGAIMVLFLFVVMLLDLGHELPAWLQRDRSRFLLGVGAAALLLLELAIPIGSNDSRAPQG 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
              S +V    N + +G++L+T +  P EI+  ILL+++IGA+VL  R
Sbjct: 121 PYTSEVVGAIGNAQLVGRLLFTDFLIPFEITSVILLIAIIGAMVLARR 168


>gi|88608358|ref|YP_505913.1| NADH dehydrogenase I, J subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600527|gb|ABD45995.1| NADH dehydrogenase I, J subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 189

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 110/194 (56%), Gaps = 10/194 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +  +    +AI SSF VV+ RN +++V  L+ AF  ++ L L+ G E ++++ LVVYVGA
Sbjct: 3   ILCFSLVLVAIFSSFRVVSCRNVVHAVLYLVLAFFTSSVLLLVSGLEVLSLMLLVVYVGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + + FLF++MML+ D    +  K  G   + ++G+L   L+        +    +    +
Sbjct: 63  IAILFLFVVMMLNSD----DFEKGIGMSVAKYVGLLFMALLPFFLVLSSYDDTQQERAYI 118

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
                +++IG VLYT Y Y   +SG +LLL+M+ AI + L  +RD K Q + +Q+  +  
Sbjct: 119 G----IKDIGAVLYTDYVYLFHLSGVVLLLAMVAAISIALPSKRDTKCQVVKEQISRS-- 172

Query: 186 NSIVMVKVKSGKGI 199
           + + ++ V SGKG+
Sbjct: 173 SVVRLLNVPSGKGV 186


>gi|10802936|gb|AAG23684.1|AF288091_29 NADH dehydrogenase subunit 6 [Thraustochytrium aureum]
          Length = 204

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 110/204 (53%), Gaps = 12/204 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   F +FSF   +SSF V+ V  P+ +V SLIF+F NAAGL  +  AEF+A++ L+VY
Sbjct: 1   MEFFLFCVFSFGLCVSSFNVIFVNKPVNAVLSLIFSFCNAAGLLFMAEAEFIAILFLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--------CASNFMV 114
           +GA+ V FLF+I+ML++       +    F       +L   ++                
Sbjct: 61  IGAIAVLFLFVIIMLNLKNIFFTEKFNESFPIILIFSLLFFIILFFNQLTFYSFEVTLFE 120

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH----RRD 170
             +     +L+    N++  G+VLYT Y   L I+GFILL+++I +I+L        ++D
Sbjct: 121 LPSHIHWIKLIDSIGNIDLFGQVLYTYYFTYLLIAGFILLVAIIASIILTSNKSFLLKKD 180

Query: 171 IKRQDISKQLESNPDNSIVMVKVK 194
            K+Q I  QL  NP+ ++ ++K K
Sbjct: 181 FKKQLIFSQLSRNPNKAVFLIKKK 204


>gi|50843377|ref|YP_056604.1| NADH dehydrogenase subunit J [Propionibacterium acnes KPA171202]
 gi|50840979|gb|AAT83646.1| NADH dehydrogenase I chain J [Propionibacterium acnes KPA171202]
 gi|315107933|gb|EFT79909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL030PA1]
          Length = 284

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +D   +     +G   +  I  LA    LI+   N +     G
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGVIG 135

Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
               +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDYPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195

Query: 172 KRQDISKQLESNPD 185
           +R+ ++ ++ +  +
Sbjct: 196 QRERVTDRMAAYAE 209


>gi|309792511|ref|ZP_07686975.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Oscillochloris trichoides DG6]
 gi|308225499|gb|EFO79263.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Oscillochloris trichoides DG6]
          Length = 196

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 1/170 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L S + I ++ +VVTVRN I++   LI +F   A L+LLL AEF+A++ ++VYVG
Sbjct: 6   QIIFGLLSALVIGAAMMVVTVRNVIHAALWLIASFFGVAALYLLLEAEFIAVVQVLVYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A+ +  LF IM+   +       K         +G+     +   +       +      
Sbjct: 66  AISILILFAIMLTRSNEGDRLLTKYWWASALIALGLFGVAFLPTFTGTTWNMPQPTGPAG 125

Query: 125 VFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             +  + VE +G+   +++    EI+G +L +++IGAIV+    R   +R
Sbjct: 126 TPEVLSGVEELGRGFVSEFVLHFEIAGVLLTVALIGAIVIAFEERSRRRR 175


>gi|109156547|ref|YP_654332.1| NADH dehydrogenase subunit 6 [Astrangia sp. JVK-2006]
 gi|108744082|gb|ABG02306.1| NADH dehydrogenase subunit 6 [Astrangia sp. JVK-2006]
          Length = 186

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            I S  +VV+  NP+ S+F L+  FVN+A  FLLLG +F+A++ L+VYVGA+ V FLF++
Sbjct: 12  TIGSGIMVVSALNPVLSIFWLVLVFVNSAVFFLLLGVDFLALMFLLVYVGAIAVLFLFVV 71

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGELSRLVFK 127
           M+L++       R++        IG L             F       S +      +  
Sbjct: 72  MLLNLTDYPPVFREEIDMTNYIPIGFLIGVFFFSEIASSWFIISPRVESWDLSFPWFLVS 131

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +N+E +G+VLY        ++ F+LL++MIG IVL        K+QD+  Q+  
Sbjct: 132 YHNIEALGQVLYVACFCLFLLASFVLLVAMIGVIVLTQETEPLTKKQDLFIQINR 186


>gi|133900542|gb|ABO41437.1| NADH dehydrogenase subunit 6 [Rafflesia pricei]
          Length = 181

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F   +GL LLLG +  AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRETSGLLLLLGLDLSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+        +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILYKETLPLLPTQRKTTSLRYTVYAEKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             ++E +G +LYT Y     +   +LL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTHLETLGNLLYTYYFVWFLVPSLLLLVAMIGAIVLTMHRTTHSAVKRQDLFRRNAIDF 179


>gi|188996810|ref|YP_001931061.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931877|gb|ACD66507.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 176

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 2/167 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ F++ S +A+IS+  VV  RN +Y+V SLI   +  +GLF  LGAE V  + ++
Sbjct: 1   MELSAVAFWVLSTIAVISAIGVVFFRNIVYAVLSLISTLIAISGLFFNLGAELVGALQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y  A++VF++ +I  +    +      K   L   F  IL  EL   +   +  S +G 
Sbjct: 61  IYAVAIVVFYVLVISTVP-QYKGQAIDPKYTLLSLPFGFILFLELAYVSIYGLWASNKGI 119

Query: 121 LSRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            S  +F K +N + +  +L+T+Y +P E++  ILL++MIGAI+L  +
Sbjct: 120 FSPDIFTKISNAKAVASLLFTKYLFPFEVASLILLVAMIGAILLGRK 166


>gi|225848114|ref|YP_002728277.1| NADH-quinone oxidoreductase subunit j [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643991|gb|ACN99041.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit
           j) (ndh-1 subunit j) [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 177

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 2/167 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  + F++ S +A++S+  VV  RN +YSV SLI A +  +GLF  LGAE +  + ++
Sbjct: 1   MELSVVAFWVLSTIAVLSAIGVVFFRNIVYSVLSLISALIAISGLFFNLGAELIGALQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y  A++VF++ +I  +    +      K   L + F  IL  EL   +   +  S  G 
Sbjct: 61  IYAVAIVVFYVLVISTVP-QYKGEAVDPKYALLSAPFGFILFLELAYVSVYGLWASNTGI 119

Query: 121 LSRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            S  +F + +N + +  +L+T+Y +P E++  ILL++MIGAI+L  +
Sbjct: 120 FSPDIFNQISNAKAVATLLFTKYLFPFEVASLILLVAMIGAILLGRK 166


>gi|269836330|ref|YP_003318558.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785593|gb|ACZ37736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphaerobacter
           thermophilus DSM 20745]
          Length = 242

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 91/177 (51%), Gaps = 4/177 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + L F +   +A++++  VV  R P++S  SL+ +FVN A ++++L AEF+A   ++
Sbjct: 1   MSAEVLVFDILGAVAVLAAAGVVLARKPVHSALSLVVSFVNVAAIYVILRAEFLAAAQII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           VY GA++V  LF+IM++  +         P ++   L    + +      +     +   
Sbjct: 61  VYTGAILVLVLFVIMLVHPEDLPEFHGGRPIQRVLALILGLVLLGEVLAAILTRTVVGQP 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                  +   G N + +G+VLY+ Y  P++ +  +LL++ IGA+VL       ++R
Sbjct: 121 GPWSEQAVQAVGGNTQALGQVLYSGYVLPIQATALLLLVATIGALVLARPETPRVRR 177


>gi|124484827|ref|YP_001031209.1| NADH dehydrogenase subunit 6 [Amphimedon queenslandica]
 gi|113952599|gb|ABI48998.1| NADH dehydrogenase subunit 6 [Amphimedon queenslandica]
          Length = 197

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 8/179 (4%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
              ++S+  V++   P+Y+V  LI AF++ + +F+ +G  ++  I ++VYVGA+ + FLF
Sbjct: 2   IWGVVSAVKVISAVRPVYAVLWLISAFLSVSAVFIFIGLVYMGFIMIIVYVGAIAILFLF 61

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSRLVF---KG 128
           ++MMLD   E A             +G+    +      ++  +  +   SR +     G
Sbjct: 62  VMMMLDQGKEEAGTPIVNIIPMGMIVGVGFLWVAATGGEWVGAYITQQNHSRGMIGGQPG 121

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR----DIKRQDISKQLESN 183
            ++  IG+V+YT+Y+Y   I  +ILL++M+GAIVL  RH      +  RQD+  Q   +
Sbjct: 122 GDIVAIGRVVYTEYSYMFIIVSYILLVAMVGAIVLTHRHGEYGPDEPMRQDVYIQTSRD 180


>gi|257852680|gb|ACV71352.1| NADH dehydrogenase subunit 6 [Rafflesia tuan-mudae]
          Length = 180

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 13/179 (7%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F   +GL LLLG +  AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFPILVFRETSGLLLLLGLDLSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127
           I I        R    S  IG IL  E+        +     +           +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILYKETLPLLPTQRKTTSLRYTVYAEKVRS 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184
             ++E +G +LYT Y     +   +LL++MIGAIVL +       +KRQD+ ++   + 
Sbjct: 121 WTHLETLGNLLYTYYFVWFLVPSILLLVAMIGAIVLTMHRTTHSAVKRQDLFRRNAIDF 179


>gi|164421017|ref|YP_001648538.1| NADH dehydrogenase subunit 6 [Iotrochota birotulata]
 gi|158938947|gb|ABW83873.1| NADH dehydrogenase subunit 6 [Iotrochota birotulata]
          Length = 183

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 4/177 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +FS   I    +V++  N ++SV   I AF++A  LF+ L  +F+A+I L+VYVGA+ + 
Sbjct: 7   VFSMSLIFXGIMVISALNSVHSVLWXIVAFISAXVLFIFLEVDFIALIFLIVYVGAIAIL 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS----RLV 125
           FLF+IMML++                F IG++    ++  S++ V    G  S      +
Sbjct: 67  FLFVIMMLNLTDLKGLLDMSNYMPAGFMIGLVVFFEVLIYSSWGVSDLSGGRSYFRWDFI 126

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            K  N++ +G +LYT YAY   ++ FILL++MIG IVL      +IKRQ+   Q+  
Sbjct: 127 EKVTNIQGLGCILYTDYAYLFILASFILLVAMIGVIVLTFSISAEIKRQEGFIQISR 183


>gi|229490769|ref|ZP_04384604.1| NADH-quinone oxidoreductase, j subunit nuoj [Rhodococcus
           erythropolis SK121]
 gi|229322159|gb|EEN87945.1| NADH-quinone oxidoreductase, j subunit nuoj [Rhodococcus
           erythropolis SK121]
          Length = 265

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 1/167 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+IS+  VV     +YS   L    +  A  +++ GA F+ ++ +VV
Sbjct: 20  TGEAVQFWILGTLAVISALGVVAAPKAVYSALFLAMTMIILAVFYIVQGALFLGVVQIVV 79

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   S  + I     ++        S  G  
Sbjct: 80  YTGAVMMLFLFVLMLVGVDSSDSLVETLRGQRVSAIV-IGVGFGLLLIGGLGNASISGFT 138

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                   N++ +  +++ +Y +  E++G +L+ + +GA++L  R +
Sbjct: 139 GFTGLDQGNIDALADLIFIRYVWAFELTGALLITATLGAMMLAHREK 185


>gi|269128604|ref|YP_003301974.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Thermomonospora curvata DSM 43183]
 gi|268313562|gb|ACY99936.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermomonospora curvata DSM 43183]
          Length = 308

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 92/171 (53%), Gaps = 2/171 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F+L + +++ ++  +V +R  ++S   L    ++ A L+ +  A F+A + ++VY 
Sbjct: 22  EPVVFWLLAVVSVAAALGMVFLRKAVHSALMLAVVMLSLAVLYAVQDAPFLAFVQVIVYT 81

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFS-AEGEL 121
           GAV++ FLF++M++ +    +     RG  + +   G+  A L++        S + G  
Sbjct: 82  GAVLMLFLFVLMLVGVSSTDSLVETIRGQRIWAAIAGLGFAVLVISGLGNAALSDSMGLA 141

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +     G NV+ + ++L+T+Y +  E++  +L+ + +GA+VL  R R   K
Sbjct: 142 AANAEAGGNVQGLARLLFTKYVFAFEVTSALLITAALGAMVLAHRERTSPK 192


>gi|256425959|ref|YP_003126612.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga
           pinensis DSM 2588]
 gi|256040867|gb|ACU64411.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga
           pinensis DSM 2588]
          Length = 167

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 93/167 (55%), Gaps = 3/167 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q + F + S ++IIS+  V+  +NP+ SV  LI  F   AG +++L A+F+A++ ++
Sbjct: 3   MSLQQIVFGVLSIISIISALGVILSKNPVTSVLCLIVTFFTIAGHYIMLNAQFLAVVHII 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V FLF+IM+++++ E+   ++          G     +++ A      +    
Sbjct: 63  VYAGAIMVLFLFVIMLMNLNAEIEPQKRNWLKYAGAISGGALLLVLLGALREADVTPLQP 122

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            S  +   +N   +GK L+ QY  P E+S  + L +M+GA+V+  R 
Sbjct: 123 GSTDIGLISN---LGKTLFNQYVVPFEVSSILFLSAMVGAVVIGKRE 166


>gi|107736864|ref|YP_626491.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168915]
 gi|107736891|ref|YP_626504.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168916]
 gi|99866575|gb|ABF67623.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168915]
 gi|99866589|gb|ABF67636.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168916]
          Length = 204

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F+ + S  +V++  +P++S+F LI  FV +A LFLLLG +FVA++ L++YVGA+ + 
Sbjct: 1   MLAFVIVGSGIMVISTLSPVHSIFWLIVVFVGSAALFLLLGVDFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRG------------FLGSFFIGILAAELIVCASNFMVFSA 117
           FLF+IM+L++   +   R   G             +G+FF   +A+  ++    +   ++
Sbjct: 61  FLFVIMLLNLTDFLPAFRWGGGEADMTNYAPIGLTIGTFFFSEVASSWLIVGGPYAHRTS 120

Query: 118 EG---------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                        S  + K +N+E +G++LY    Y   ++  ILL++MIG IVL     
Sbjct: 121 FWGERGGAWDLASSWFLMKYHNIEALGRILYIACYYLFILASLILLVAMIGGIVLTQEVG 180

Query: 169 RDI----KRQDISKQLESNPDN 186
            ++    K+Q+I  Q     D 
Sbjct: 181 AEVGPLAKKQEIFLQTSRAYDK 202


>gi|56416877|ref|YP_153951.1| NADH dehydrogenase chain J [Anaplasma marginale str. St. Maries]
 gi|222475242|ref|YP_002563658.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str.
           Florida]
 gi|254995065|ref|ZP_05277255.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str.
           Mississippi]
 gi|255003226|ref|ZP_05278190.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004354|ref|ZP_05279155.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str.
           Virginia]
 gi|56388109|gb|AAV86696.1| NADH dehydrogenase chain J [Anaplasma marginale str. St. Maries]
 gi|222419379|gb|ACM49402.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str.
           Florida]
          Length = 200

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 118/202 (58%), Gaps = 11/202 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M S  F+ F+ +A++S+  VV + NP+YSV SLI  F  ++ +F++LGAE VAM+ ++VY
Sbjct: 1   MLSFLFFCFAGVAVLSAVGVVLLPNPVYSVLSLILTFFVSSAVFIMLGAELVAMLLVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V FLF++MMLDI    +    + G +  + +G+    L      + VF A+    
Sbjct: 61  VGAVAVLFLFVVMMLDISRVGS----RHGLVKHYPLGVACMFLFFGCMVYSVFHAKSSAV 116

Query: 123 RLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK-RQDIS 177
                G    +NV  IG  LYT+YAY  +++G +LL++ +G+++L++        +QD+ 
Sbjct: 117 DGSGSGFGSVDNVFLIGLQLYTEYAYAFQLAGVLLLIAGVGSLILIVGGSSGRSLKQDVG 176

Query: 178 KQLESNPDNSIVMVKVKSGKGI 199
           +Q+  +  + I ++  + G G+
Sbjct: 177 QQVGRS--SRIKLLSPEVGVGV 196


>gi|226306205|ref|YP_002766165.1| NADH-quinone oxidoreductase chain J [Rhodococcus erythropolis PR4]
 gi|226185322|dbj|BAH33426.1| NADH-quinone oxidoreductase chain J [Rhodococcus erythropolis PR4]
          Length = 265

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 1/167 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++   +A+IS+  VV     +YS   L    +  A  +++ GA F+ ++ +VV
Sbjct: 20  TGEAVQFWILGTLAVISALGVVAAPKAVYSALFLAMTMIILAVFYIVQGALFLGVVQIVV 79

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG   S  + I     ++        S  G  
Sbjct: 80  YTGAVMMLFLFVLMLVGVDSSDSLVETLRGQRVSAIV-IGVGFGLLLIGGLGNASISGFT 138

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                   N++ +  +++ +Y +  E++G +L+ + +GA++L  R +
Sbjct: 139 GFTGLDQGNIDALADLIFIRYVWAFELTGALLITATLGAMMLAHREK 185


>gi|109156421|ref|YP_654308.1| NADH dehydrogenase subunit 6 [Ricordea florida]
 gi|108515291|gb|ABF93388.1| NADH dehydrogenase subunit 6 [Ricordea florida]
          Length = 201

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 106/201 (52%), Gaps = 24/201 (11%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F+ + S  +V++  NP++S+F LI  FV +A LFLLLG +FVA++ L++YVGA+ + 
Sbjct: 1   MLAFVIVGSGIMVISTLNPVHSIFWLIVVFVGSAVLFLLLGIDFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           FLF+IM+L++           + ++         +G FF   +A+  ++    +   ++ 
Sbjct: 61  FLFVIMLLNLADFPPAFRWGGEADMTNYAPIGLIIGVFFFSEVASSWLIVGGPYAHRASF 120

Query: 119 G---------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                       S  + K +N+E +G++LY    Y   ++  ILL++MIG IVL      
Sbjct: 121 WVEVGEAWDLACSWFLMKYHNIEALGRILYIACYYLFILASLILLVAMIGGIVLTQEVGS 180

Query: 170 DI----KRQDISKQLESNPDN 186
           ++    K+Q+I  Q     +N
Sbjct: 181 EVGPMAKKQEIFFQTSRIYEN 201


>gi|118602284|ref|YP_903499.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567223|gb|ABL02028.1| NADH dehydrogenase subunit J [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 202

 Score =  124 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 114/204 (55%), Gaps = 10/204 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FY+ SF  I+SS  ++  RN   +V  L+ AF NAA +++LL AEF+A+  ++
Sbjct: 1   MNSEQIIFYILSFWFIVSSLAMIFSRNAAKAVLFLVLAFFNAASIWILLEAEFLAITLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118
           VYVGAV+V FLF+I ML+ID        +  F G   +G++ A +IV   + ++ + +  
Sbjct: 61  VYVGAVMVLFLFVIKMLNIDKST----LRAKFTGYLPLGLIVAAIIVAEMSLVLGANQFG 116

Query: 119 ----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                   R     +N+  +   LYT Y YP E++  +LL+++I AI L+ R+    K+Q
Sbjct: 117 LDVFSSPERHGMDYSNITVLAMQLYTTYVYPFELAAVLLLIAIIAAITLVYRNETSRKKQ 176

Query: 175 DISKQLESNPDNSIVMVKVKSGKG 198
            IS+Q+     + + +V +   KG
Sbjct: 177 SISEQVNVQAKDRVRLVSITPSKG 200


>gi|218514978|ref|ZP_03511818.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli 8C-3]
          Length = 166

 Score =  124 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LFS +++I++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFSAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+   V +     G L +  + +L    ++    +    +  E  
Sbjct: 61  VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLPALVLVVLLGVEMLVLVLWSDRFSVIE-P 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +  G+ +  +   L+  Y  P EI+  ILL++++GAIVL  + 
Sbjct: 120 VAMRGGDQIRQLSTTLFADYLLPFEIASVILLVALVGAIVLARKE 164


>gi|218673002|ref|ZP_03522671.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli GR56]
          Length = 166

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ +++I++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFAAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF-FIGILAAELIVCASNFMVFSAEGEL 121
           VGA++V FLF+IMM+D+   V +     G L +   +G+L  E++V       FS    +
Sbjct: 61  VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLSALVLVGLLGVEMLVLVLWSNRFSVIEPV 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +  +  G+ +  +   L+  Y  P EI+  ILL ++IGAIVL  + + 
Sbjct: 121 A--MRGGDQIRQLSTTLFADYLLPFEIASVILLAALIGAIVLARKEQE 166


>gi|109156534|ref|YP_654295.1| NADH dehydrogenase subunit 6 [Rhodactis sp. CASIZ 171755]
 gi|108515262|gb|ABF93375.1| NADH dehydrogenase subunit 6 [Rhodactis sp. CASIZ 171755]
          Length = 203

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 107/201 (53%), Gaps = 24/201 (11%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F+ + S  +V++  +P++S+F LI  FV +A LFLLLG +FVA++ L++YVGA+ + 
Sbjct: 1   MLAFVIVGSGIMVISTLSPVHSIFWLIVVFVGSAVLFLLLGIDFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           FLF+IM+L++           + ++         +G+FF   +A+  ++    +   ++ 
Sbjct: 61  FLFVIMLLNLTDFPPAFRWGGEADMTNYAPIGLTIGTFFFSEVASSWLIVGGPYAHRTSF 120

Query: 119 G---------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                       S  + K +N+E +G++LY    Y   ++ FILL++MIG +VL      
Sbjct: 121 WGERGGAWDLASSWFLMKYHNIEALGRILYIACYYLFILASFILLVAMIGGMVLTQEVGA 180

Query: 170 DI----KRQDISKQLESNPDN 186
           ++    K+Q+I  Q     D 
Sbjct: 181 EVGPLAKKQEIFLQTSRAYDK 201


>gi|153799806|gb|ABS50634.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
 gi|153799808|gb|ABS50635.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
          Length = 171

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 11/170 (6%)

Query: 30  YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89
           +SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I I        
Sbjct: 1   HSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVL 60

Query: 90  RGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFKGNNVENIGKVL 138
           R    S  IG I   E+     N  +     + +            V    N+E +G +L
Sbjct: 61  RYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLL 120

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188
           YT Y+    +   ILL++MIGAIVL +     +KRQD+ ++   +   +I
Sbjct: 121 YTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDFRRTI 170


>gi|119714793|ref|YP_921758.1| NADH dehydrogenase subunit J [Nocardioides sp. JS614]
 gi|119535454|gb|ABL80071.1| NADH dehydrogenase subunit J [Nocardioides sp. JS614]
          Length = 275

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 89/190 (46%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F++ + + +I++  ++ VR  +++   L    ++ A L+  L A F+  + ++VY GA
Sbjct: 2   IAFWILAPVMVIAALGLLFVRKAVHAALLLAVVMMSLAVLYAALEAPFLFAVQIIVYTGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +++ FLF++M++ +D   +     RG      I  L   L++      +           
Sbjct: 62  ILMLFLFVLMLVGVDASDSVVETIRGQRVLAAIAGLGLGLVMVLGLSQISLGTAVGLEDA 121

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
             G N++ +  +L+++Y +  E++  +L+ + +GA+VL  R R   K   +S   +   D
Sbjct: 122 NSGGNIQALANILFSRYVFAFEVTSALLITAAVGAMVLAHRERLTPKPTQMSLAAQRMKD 181

Query: 186 NSIVMVKVKS 195
            +        
Sbjct: 182 YAERGTHPGP 191


>gi|300122800|emb|CBK23815.2| unnamed protein product [Blastocystis hominis]
          Length = 195

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 113/194 (58%), Gaps = 5/194 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +L+F +F+ + IIS F+ ++V N +Y+V  LI AF ++  +  LL  +++A++ +++Y
Sbjct: 1   MSNLYFNIFASIIIISVFMTISVNNAVYAVLFLILAFFSSMCILFLLNIDYLALMFILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE---- 118
           +GA+ + FLF++MML I I      K   F+      ++   +++ A  F VF       
Sbjct: 61  IGAITILFLFVVMMLKIKINEKNTTKFISFINIIICCLIVYNVLLNADIFNVFLNNDLVY 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDIS 177
            +    ++  +N++ +G+V++T Y +   ++GF+LL+ MI AI+L     R I+R Q + 
Sbjct: 121 NDWFSKLYYVDNIKMLGQVIFTNYYFYFILAGFVLLIGMISAILLSKESTRVIRRYQLVY 180

Query: 178 KQLESNPDNSIVMV 191
           +Q+  +  N++ +V
Sbjct: 181 QQISRDVSNAVFLV 194


>gi|314965049|gb|EFT09148.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL082PA2]
          Length = 284

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 93/194 (47%), Gaps = 10/194 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + ++++ ++V  + P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +D    + E  K            L   LI+   N +     G
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALALVVLLILAVGNAVTTDVIG 135

Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
               +         GNNV+++ ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKKKS 195

Query: 172 KRQDISKQLESNPD 185
           +R+ ++ ++ +  +
Sbjct: 196 QRERVTDRMAAYAE 209


>gi|150375781|ref|YP_001312377.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           medicae WSM419]
 gi|150030328|gb|ABR62444.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           medicae WSM419]
          Length = 166

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ ++++++  +V  RNP++S  +L+  F+  + +F++LGA  +A+I + VY
Sbjct: 1   MHQGFFLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+   V +     G L +  + +L    +V    +     E    
Sbjct: 61  VGAIMVLFLFVIMMVDVREAVLQRFMPGGNLPALALLLLLGTEMVVLVLWSDRFIE-SPP 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                G+ + ++ K L++ Y  P EI+  ILL +++GAIVL  + 
Sbjct: 120 VAERGGDAIRDLSKTLFSDYLLPFEIASVILLAALVGAIVLARKE 164


>gi|313836209|gb|EFS73923.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL037PA2]
 gi|314927644|gb|EFS91475.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL044PA1]
 gi|314971357|gb|EFT15455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium acnes HL037PA3]
 gi|328906294|gb|EGG26069.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Propionibacterium sp. P08]
          Length = 284

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 92/191 (48%), Gaps = 10/191 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F+L + + + ++ ++V  R P++S  SL    +  A  +    A F+ ++ ++V
Sbjct: 16  TASQWAFWLLAPIMVCAALVIVFARKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119
           Y GA+++ FLF++M++ +D   +     +G   +  +  LA    LI+   N +     G
Sbjct: 76  YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAIVAALAFVVLLILAVGNAVTTGVIG 135

Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171
               +         G+NV+ + ++++T+Y    E +  +L+ + +G +VL      ++  
Sbjct: 136 TDHPMGLGQANAAGGDNVKLLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKT 195

Query: 172 KRQDISKQLES 182
           +R+ ++ ++  
Sbjct: 196 QRERVTDRMAV 206


>gi|218463312|ref|ZP_03503403.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli Kim 5]
          Length = 166

 Score =  123 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ ++++++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFATVSVVTALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+   V +     G L +  + ++    ++    +    +  E  
Sbjct: 61  VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLLALVLVVVLGLEMLVLVLWSDRFSVIE-P 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +  G+ +  +   L+  Y  P EI+  ILL +++GAIVL  + 
Sbjct: 120 VAMRGGDQIRQLSTTLFADYLLPFEIASVILLAALVGAIVLARKE 164


>gi|291285966|ref|YP_003502782.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883126|gb|ADD66826.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 170

 Score =  123 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 92/166 (55%), Gaps = 1/166 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           ++ ++ F++    A++S+  ++T  NP++S   ++  F + AG+F+ L AEF+A I ++V
Sbjct: 4   ILANIGFWVLGITAVVSALFLITRENPVHSALWMLLTFFSVAGIFVQLDAEFIAAIQVMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-MVFSAEGE 120
           Y GA++V ++F++M+L+           +  LG     I+  ++++      ++ +A+  
Sbjct: 64  YAGAILVLYMFVVMLLNPKSNGFIKMPFKVVLGGIVAFIVFLQIVMTLMGADIIKTAKLT 123

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                    NV+  G  L+T Y  P EI   +LL++MIGAIV+  +
Sbjct: 124 GIADPHNFGNVKMFGIDLFTTYLVPFEIVSIMLLVAMIGAIVIAKK 169


>gi|254445138|ref|ZP_05058614.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198259446|gb|EDY83754.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 167

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 1/168 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  LFFY+F+ + +  +F VV  RNP+ +   LI  F+  A LF++L A F+A+I ++VY
Sbjct: 1   MTDLFFYIFAAITLACAFAVVFSRNPVNAAMFLILTFLGMASLFVMLEAYFLAVIQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+V FLFIIM+LD+  E     K    + S     +    +V  ++     A  E  
Sbjct: 61  AGAVVVLFLFIIMLLDVKEESKAKLKPLTLVASVIGFAILLVGVVGITSSDNIKATTETL 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                   ++N G  L+T Y  P++++GF+LL++MIG IVL  R + D
Sbjct: 121 PEAAGAT-LKNFGYELFTTYQLPMQVTGFLLLVAMIGVIVLSKRVKTD 167


>gi|190893206|ref|YP_001979748.1| NADH-ubiquinone oxidoreductase, chain J [Rhizobium etli CIAT 652]
 gi|190698485|gb|ACE92570.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli CIAT 652]
          Length = 166

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LFS +++I++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFSAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+   V +     G L +  + +L    ++    +    +  E  
Sbjct: 61  VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLPALVLVVLLGVEMLVLVLWSDRFSVIE-P 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +  G+ +  +   L+  Y  P EI+  ILL +++GAIVL  + 
Sbjct: 120 VAMRGGDQIRQLSTTLFADYLLPFEIASVILLAALVGAIVLARKE 164


>gi|118340560|gb|ABK80610.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           subunit J [uncultured marine Nitrospinaceae bacterium]
          Length = 169

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 2/167 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L FY  +   ++ +  VV   +P+ S  SLI   +  AG+F+L  A F+A++ +++Y
Sbjct: 1   MELLIFYPLAGFCVVLALGVVFNNSPVGSAISLIGMMLGLAGIFILQQAHFIAILQIIIY 60

Query: 63  VGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GA++V F+F+IM+L++    +     ++R  L S   GILA  ++   S+ +       
Sbjct: 61  AGAIMVLFMFVIMLLNLKKGDDAGWISRERNLLLSVLTGILATGILYKVSDIIFTRKMNT 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            + L      V  IG+ L+T +  P E++  +LL +M+GA+VL    
Sbjct: 121 PAILTDSFGTVAVIGETLFTDFVLPFEVASILLLAAMVGAVVLAKTK 167


>gi|301353210|ref|YP_003795207.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae]
 gi|301353240|ref|YP_003795237.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae]
 gi|290573158|gb|ADD46345.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae]
 gi|290573188|gb|ADD46375.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae]
          Length = 197

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 7/196 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++FF LF+ + +IS  +VV+V N IYSV  LIF+F N   L LLLG +F+++I L++Y
Sbjct: 1   MSNIFFNLFASLLLISLIMVVSVNNAIYSVLFLIFSFFNVMCLLLLLGVDFISLIFLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +GA+ V FLF+IMM+ +  E     K         + I   ++      FMVF  E    
Sbjct: 61  LGAITVLFLFVIMMIQLKTEDFGNFKFIPVFCFVVLFIFFIDIFKNNDVFMVFLNENSNL 120

Query: 123 RL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QD 175
                   +   +N+  IG++ YT +A    ISG ILL++MIGAI+L L+  + +++ Q+
Sbjct: 121 NYMNWFLKIINIDNIRMIGQIAYTYFAVYFIISGIILLIAMIGAILLSLKKNQYVRKWQN 180

Query: 176 ISKQLESNPDNSIVMV 191
            S+QL    +N+I  V
Sbjct: 181 TSQQLSRCVENAIFFV 196


>gi|71733150|ref|YP_271954.1| NADH dehydrogenase subunit 6 [Montastraea faveolata]
 gi|71733164|ref|YP_271941.1| NADH dehydrogenase subunit 6 [Montastraea franksi]
 gi|71733178|ref|YP_271928.1| NADH dehydrogenase subunit 6 [Montastraea annularis]
 gi|71043518|dbj|BAE16181.1| NADH dehydrogenase subunit 6 [Montastraea annularis]
 gi|71043532|dbj|BAE16194.1| NADH dehydrogenase subunit 6 [Montastraea annularis]
 gi|71043546|dbj|BAE16207.1| NADH dehydrogenase subunit 6 [Montastraea franksi]
 gi|71043560|dbj|BAE16220.1| NADH dehydrogenase subunit 6 [Montastraea franksi]
 gi|71043574|dbj|BAE16233.1| NADH dehydrogenase subunit 6 [Montastraea faveolata]
 gi|71043588|dbj|BAE16246.1| NADH dehydrogenase subunit 6 [Montastraea faveolata]
          Length = 186

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 8/187 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++L F  F    I+S  +VV+  NP+ S+F L+  FVN+A  FL L  +F+A++ L+VY
Sbjct: 1   MEALIFCFF-LSTIVSGIMVVSALNPVLSIFWLVLVFVNSAVFFLWLEVDFLALMFLLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--CASNFMVF----- 115
           VGA+ V FLF++M+L++       R++        +G L         AS++ +      
Sbjct: 60  VGAIAVLFLFVVMLLNLTDYPPVFREEVDMTNYMPVGFLIGGFFFSEIASSWSIIFPRVE 119

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
           S +      +   +N+E +G+VLY        ++GF LL++M+G IVL        K+QD
Sbjct: 120 SWDLSFPWFLVSYHNIEALGQVLYISCFCLFFLAGFALLVAMVGVIVLTQELEPLTKKQD 179

Query: 176 ISKQLES 182
           +  Q+  
Sbjct: 180 LFIQINR 186


>gi|219847957|ref|YP_002462390.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus aggregans DSM 9485]
 gi|219542216|gb|ACL23954.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           aggregans DSM 9485]
          Length = 168

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 86/167 (51%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F + + +AI+ +  +V  RN ++S   L+  F   A LFLLL A F+  I L VY
Sbjct: 1   MELILFLITALIAIVGAVAMVVSRNAVHSALFLLLNFAAIAVLFLLLHAPFLFAIQLTVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF++M+L  +     P +         +  LA  +I         +      
Sbjct: 61  AGAIMVLFLFVVMLLGAEKVEDAPDRIAWQQPLALVLGLALLVIAVVVGLGGATTPPPDG 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             +    +  ++G +L+T Y  P E++GFILL++++G +VL  R R+
Sbjct: 121 EALVPFTDPRSLGGLLFTDYLLPFEVTGFILLIAVVGVVVLSQRGRK 167


>gi|257852682|gb|ACV71353.1| NADH dehydrogenase subunit 6 [Rhizanthes lowii]
          Length = 176

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
            F+V   +NP++SV   I  F   +GL L LG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GFMVARAKNPVHSVLFSILVFRETSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL--------VFKGN 129
           I I        R    S  IG IL  E+        +   + + + L        +    
Sbjct: 61  IQIAEIHEEVLRYLPFSGLIGLILWWEMFFILDTIPLIKQKRKTTYLGYKVYAGKIISWT 120

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
           N+E +G +LYT Y     +   +LL++MIGAIVL +       RQD+ ++   + 
Sbjct: 121 NLETLGNLLYTYYFVWFLVPSILLLVAMIGAIVLTMHRTTHGVRQDLFRRNAIDF 175


>gi|116624762|ref|YP_826918.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116227924|gb|ABJ86633.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 169

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 1/168 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++ FY+F+ M +    L +T R+ ++S  SLI + +  AGL+LL  AEF+  + +V
Sbjct: 1   MLTDTILFYIFAVMVLAGGILTITRRSAVHSAISLIVSLLGVAGLYLLQQAEFLFAVQIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG 119
           +YVG ++V FLF+IM++++D    E +  R + +    + ++ A++              
Sbjct: 61  LYVGGIMVLFLFVIMLVNLDQAAKERQFNRQWSIALIAVALVGAQVGYFLYKGKGSFRIA 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           E+       +NVE +   L+T+Y  P EI+  +LL++++G++V+  + 
Sbjct: 121 EVIAPAAVTHNVEQVADSLFTEYLLPFEIASILLLVAVVGSVVMAKKR 168


>gi|94985025|ref|YP_604389.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Deinococcus
           geothermalis DSM 11300]
 gi|94555306|gb|ABF45220.1| NADH dehydrogenase subunit J [Deinococcus geothermalis DSM 11300]
          Length = 197

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 1/162 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F     +A++ + + V  RN +++   L+   ++ AGLF  L A F+A   ++VY GA
Sbjct: 2   IAFIFLGALALVGAVITVAARNAVHAALGLVGTLLSVAGLFASLNAAFLAATQVIVYAGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SRL 124
           ++V FLF+IM+L+ +  ++             IG +          F             
Sbjct: 62  IMVLFLFVIMLLNANQPISGRDPVPFVRELAGIGGVLLAGAFAVLAFTYRDPRPLAEGAA 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +G N   +G+VL T++  P E    +LL++++GAI L+ R
Sbjct: 122 ALQGGNAAPVGEVLLTRFLLPFEAVSILLLVAIVGAIALVQR 163


>gi|297181765|gb|ADI17946.1| NADH:ubiquinone oxidoreductase subunit 6 (chain j) [uncultured
           Desulfobacterales bacterium HF0200_07G10]
          Length = 169

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 92/167 (55%), Gaps = 2/167 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L FY  + + ++ +  VV   +P+ S  SLI   +  AG+F+L  A F+A++ +++Y
Sbjct: 1   MELLIFYPLAGLCVLLALGVVFNNSPVGSAISLIGMMLGLAGIFILQQAHFIAILQIIIY 60

Query: 63  VGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GA++V F+F+IM+L++    +     +++  L S   G+LA  ++   S+ +       
Sbjct: 61  AGAIMVLFMFVIMLLNLKKGDDTGWTAREKNLLLSILTGLLAIGILYKISDIIFSGKMAT 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            + L      V NIGK L+T Y  P E++  +LL +M+GA+VL    
Sbjct: 121 PAILPDSFGTVANIGKTLFTDYVLPFEVASILLLAAMVGAVVLAKTK 167


>gi|46202538|ref|ZP_00208558.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 159

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 96/160 (60%), Gaps = 6/160 (3%)

Query: 45  LFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104
           +FLLLGAEF+AM+ ++VYVGAV V FLF++MMLDI++   +    +       I ++   
Sbjct: 1   MFLLLGAEFLAMVLVIVYVGAVAVLFLFVVMMLDINMVELKEGFLQYLPTGALIAVVLLV 60

Query: 105 LIVCASNFMVFSAEGE-----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
            ++       F+ + E      +  + + +N   +GK++YT Y Y  + SG +LL++MIG
Sbjct: 61  ELLAMFGGWAFAPDVEAMIKAPTPTLDQASNTVALGKLIYTNYVYLFQASGLVLLVAMIG 120

Query: 160 AIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
            I+L  R R  +++Q I+ Q+  +  +S+ + KV+SG+GI
Sbjct: 121 TILLTHRKRTGVRKQIIADQVGRSR-DSVELKKVQSGRGI 159


>gi|197259884|ref|YP_002149679.1| NADH dehydrogenase subunit 6 [Madracis mirabilis]
 gi|169809232|gb|ACA84070.1| NADH dehydrogenase subunit 6 [Madracis mirabilis]
          Length = 187

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 8/186 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
             F + F    I S  +VV+  NP+ S+F L+  F+N+A  FLLLG +F+A++ L++YVG
Sbjct: 2   EFFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--------VCASNFMVFS 116
           A+ + FLF+IM+L++       +++        IG +             +   +F V +
Sbjct: 62  AIAILFLFVIMLLNLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLLLGSFQVEN 121

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +      +   +N+E +G VLY        ++ FILL++MIG IVL        K+QD+
Sbjct: 122 WDLSFPWFLISYHNIEALGHVLYVSCFCLFLLASFILLVAMIGVIVLTQETEPLSKKQDL 181

Query: 177 SKQLES 182
             Q+  
Sbjct: 182 FFQINR 187


>gi|313768549|ref|YP_004062223.1| NADH dehydrogenase subunit 6 [Plocamiocolax pulvinata]
 gi|312844676|gb|ADR03239.1| NADH dehydrogenase subunit 6 [Plocamiocolax pulvinata]
          Length = 200

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 112/196 (57%), Gaps = 5/196 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +    ++FS   +IS+ +V+   N ++SV  LI  F N A L L LGAEF++ + ++
Sbjct: 1   MNTEISITFIFSSFVLISALMVIYSSNAVHSVLFLILVFFNMAILLLFLGAEFISFLLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVGA+ V FLF++MML+  I      +K  + LG     I++++     S  +V   + 
Sbjct: 61  VYVGAIAVLFLFVVMMLNTKISSKNMDQKSIWPLGIIIFFIISSQFYNINSQNLVLVFDN 120

Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            +  L F      NN++ IGK+ YT Y++   +S F+LL++MIGAI L L H+ +IK+Q 
Sbjct: 121 NILVLWFNESFFFNNIQVIGKLFYTYYSFLFFLSSFLLLIAMIGAITLTLHHKTNIKKQQ 180

Query: 176 ISKQLESNPDNSIVMV 191
           I+ QL  N   SI  +
Sbjct: 181 INTQLIRNYKGSIKFI 196


>gi|193782685|ref|NP_436087.2| NuoJ2 NADH:quinone oxidoreductase subunit 6 (chain J)
           [Sinorhizobium meliloti 1021]
 gi|307304387|ref|ZP_07584138.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti BL225C]
 gi|10945071|emb|CAC14146.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
 gi|193073141|gb|AAK65499.2| NuoJ2 NADH:quinone oxidoreductase subunit 6 (chain J)
           [Sinorhizobium meliloti 1021]
 gi|306902589|gb|EFN33183.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti BL225C]
          Length = 166

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ ++++++  +V  RNP++S  +L+  F+  + +F++LGA  +A+I + VY
Sbjct: 1   MHQGFFLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+   V +     G L +  + +L    +V    +     E    
Sbjct: 61  VGAIMVLFLFVIMMVDVREAVLQRFMPGGNLPALALLVLLGAEMVVLVLWSDRFIE-SPP 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                G+ + ++ K L++ Y  P E++  ILL +++GAIVL  + 
Sbjct: 120 VAERGGDAIRDLSKTLFSDYLLPFEVASVILLAALVGAIVLARKE 164


>gi|327191015|gb|EGE58069.1| putative NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli CNPAF512]
          Length = 166

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ +++I++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFAAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+   V +     G L +  + +L    ++    +    +  E  
Sbjct: 61  VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLPALVLVVLLGVEMLVLVLWSDRFSVIE-P 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +  G+ +  +   L+  Y  P E +  ILL +++GAIVL  + 
Sbjct: 120 VAMRGGDQIRQLSTTLFADYLLPFEAASVILLAALVGAIVLARKE 164


>gi|154508647|ref|ZP_02044289.1| hypothetical protein ACTODO_01148 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798281|gb|EDN80701.1| hypothetical protein ACTODO_01148 [Actinomyces odontolyticus ATCC
           17982]
          Length = 325

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F   + + +  +  V+  +   +SV  ++   +  A L++   A F+ +  +VV
Sbjct: 13  TGEIILFACTAILMVACALGVLFFKKAAHSVICMVGVMLGLAVLYIANSAPFLGVAQIVV 72

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF+IM++ I       R+ RG + +  +G L   +IV  +      A  + 
Sbjct: 73  YTGAIMMLFLFVIMLIGIGTSDDYARQSRGAIVAAVLGGLGLIVIVTTAILKAVPAPHKP 132

Query: 122 SRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             +    N  + ++   L+ ++   +E++G +L+ + +GA++L    R
Sbjct: 133 VEVDPYSNQPITDLAITLFQEHWLSMELAGGLLITAAVGAMLLTHSDR 180


>gi|293191759|ref|ZP_06609283.1| NADH dehydrogenase I, J subunit [Actinomyces odontolyticus F0309]
 gi|292820452|gb|EFF79435.1| NADH dehydrogenase I, J subunit [Actinomyces odontolyticus F0309]
          Length = 325

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F   + + +  +  V+  +   +SV  ++   +  A L++   A F+ +  +VV
Sbjct: 13  TGEIILFACTAILMVACALGVLFFKKAAHSVICMVGVMLGLAVLYIANSAPFLGVAQIVV 72

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF+IM++ I       R+ RG + +  +G L   +IV  +      A  + 
Sbjct: 73  YTGAIMMLFLFVIMLIGIGTSDDYARQSRGAIVAAVLGGLGLIVIVTTAILKAVPAPHKP 132

Query: 122 SRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             +    N  + ++   L+ ++   +E++G +L+ + +GA++L    R
Sbjct: 133 VEVDPYSNQPITDLAITLFQEHWLSMELAGGLLITAAVGAMLLTHSDR 180


>gi|229082509|ref|ZP_04214972.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock4-2]
 gi|228700941|gb|EEL53464.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock4-2]
          Length = 162

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAIVL  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLAKKDEKE 157


>gi|164421209|ref|YP_001648662.1| NADH dehydrogenase subunit 6 [Igernella notabilis]
 gi|158939021|gb|ABW83942.1| NADH dehydrogenase subunit 6 [Igernella notabilis]
          Length = 175

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 4/176 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             Y F  +AII   +V+   N ++SV  LI AF++  G+F  L  +++A I +++YVGA+
Sbjct: 3   ILYFFILLAIICGLMVILTTNAVHSVIWLIGAFLSVTGIFFWLKXDYLAFILIIIYVGAI 62

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            V FLF+IMML+++    E  K +      FI      +I+  S F+     G     + 
Sbjct: 63  SVLFLFVIMMLNLNNLTNEMNKVKTLGPGLFISAFLFLIILGQSAFVG----GFRWDPIT 118

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
             +N++ IG  LY+   Y + +  +ILL++MIG IVL        K+Q++  Q+  
Sbjct: 119 CLSNIQLIGIELYSGCYYLIILVSYILLVAMIGVIVLARELNSGAKKQNMYIQINR 174


>gi|229072761|ref|ZP_04205961.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus F65185]
 gi|229193545|ref|ZP_04320490.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC
           10876]
 gi|228589934|gb|EEK47808.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC
           10876]
 gi|228710387|gb|EEL62361.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus F65185]
          Length = 162

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAIVL  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLAKKDEKE 157


>gi|206577065|ref|YP_002237332.1| NADH-quinone oxidoreductase, J subunit [Klebsiella pneumoniae 342]
 gi|288934262|ref|YP_003438321.1| NADH dehydrogenase (quinone) [Klebsiella variicola At-22]
 gi|290508465|ref|ZP_06547836.1| NADH dehydrogenase I subunit J [Klebsiella sp. 1_1_55]
 gi|206566123|gb|ACI07899.1| NADH-quinone oxidoreductase, J subunit [Klebsiella pneumoniae 342]
 gi|288888991|gb|ADC57309.1| NADH dehydrogenase (quinone) [Klebsiella variicola At-22]
 gi|289777859|gb|EFD85856.1| NADH dehydrogenase I subunit J [Klebsiella sp. 1_1_55]
          Length = 184

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  VVT  NP++++  LI + +  AG+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVVTHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  +K    G +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERKWLQPGIWIGPAILSAVLLVVIVYAILGINDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                N + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGAAINAKEVGIALFGPYVLAVELASMLLLAGLVVAFHIGREER 163


>gi|218439483|ref|YP_002377812.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 7424]
 gi|218172211|gb|ACK70944.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece
           sp. PCC 7424]
          Length = 204

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 101/196 (51%), Gaps = 4/196 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F + + + + ++  VV + N +YS F L   F++ AG+++LL A+FVA   +++Y
Sbjct: 7   VQIVSFGILAALVLAAALGVVLLSNIVYSAFLLGGVFLSIAGIYILLNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121
           VGAV V  LF IM+++   +       R ++     G++   L       ++ +      
Sbjct: 67  VGAVNVLILFAIMLVNKQEDFK--VLPRRWIRKIATGVVCFGLFALLGTMILITPWSLNS 124

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDISKQL 180
           +      N +  IGK  ++ +  P E++  +LL++M+GAI++  R    +++  + +   
Sbjct: 125 TSPAVVENTLVEIGKHFFSDFLLPFELASVLLLMAMVGAIIIARRDFIPEMQPSEPTATA 184

Query: 181 ESNPDNSIVMVKVKSG 196
            + P+    ++ ++SG
Sbjct: 185 LTLPERPRELISLESG 200


>gi|163784656|ref|ZP_02179484.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880074|gb|EDP73750.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
          Length = 174

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 93/170 (54%), Gaps = 2/170 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  + F++FS +A++S+   +  RN +Y+V SLI   +  +GLF  +GAE V  I L+
Sbjct: 1   MELTQIAFWIFSSLAVLSAIGTIFFRNMVYTVLSLISTLIMVSGLFFTMGAELVGAIQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y  A++VF++ +I  +  + +      K   L      ++  EL   +      S  G 
Sbjct: 61  IYAVAIVVFYVLVISTVP-EFKGKAVDPKYMLLSIPVGFLIFLELAYVSIYGAWKSNTGI 119

Query: 121 LS-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            S  ++ K  N + +G +L+T+Y +P E++  ILL++MIGAI++  +  +
Sbjct: 120 FSTEVIDKIGNAKAVGTMLFTKYLFPFEVASLILLVAMIGAIIIGRKEEK 169


>gi|86359319|ref|YP_471211.1| NADH-ubiquinone oxidoreductase chain J protein [Rhizobium etli CFN
           42]
 gi|86283421|gb|ABC92484.1| probable NADH-ubiquinone oxidoreductase chain J protein [Rhizobium
           etli CFN 42]
          Length = 166

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ +++I++  VV  RNP++S  +L+  F+N + +F+LL A F+A+I + VY
Sbjct: 1   MDQGFFLLFATVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V F+F+IMM+D+   V +     G L +  + +L    ++    +    +  E  
Sbjct: 61  VGAIMVLFVFVIMMIDVREAVLQRFLPGGNLPALVLVVLLGVEMLVLVLWSDRFSVIE-P 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +  G+ +  +   L+  Y  P EI+  ILL ++IGAIVL  + 
Sbjct: 120 VAMRGGDQLRQLSTTLFADYLLPFEIASVILLAALIGAIVLARKE 164


>gi|146298997|ref|YP_001193588.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Flavobacterium johnsoniae UW101]
 gi|146153415|gb|ABQ04269.1| NADH dehydrogenase subunit J [Flavobacterium johnsoniae UW101]
          Length = 179

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 93/163 (57%), Gaps = 1/163 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + +I++FL +  RNPI+S   L+  F + AG +LLL ++F+A++ ++VY GA
Sbjct: 15  VIFCILALITVITAFLTIFSRNPIHSAIYLVICFFSIAGHYLLLNSQFLAVVHIIVYSGA 74

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +++ FLF IM+++++ +    R +   LG+  +      +++ A         G+     
Sbjct: 75  IMILFLFTIMLMNLNEQKDVHRPRITRLGA-IVSFCLIVIVLIAIFINSKPIVGDYDSTG 133

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               ++E +GK+L  +Y  P E +  +LL++MIG ++L  + +
Sbjct: 134 EDFQSIEVLGKILLNEYMVPFEFASILLLVAMIGTVLLSKKEK 176


>gi|195953135|ref|YP_002121425.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932747|gb|ACG57447.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 173

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 2/169 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + FYLF  ++II    VV+  NPIY V  L+ A +  +G+F   GAE +  + L+VY
Sbjct: 2   LNQIAFYLFGGISIICGLGVVSASNPIYVVLWLLGALIAISGIFFSAGAELLGALQLMVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           V A+ VF++ II  +         +  R  G     FI +L  E  +   + +  +    
Sbjct: 62  VVAIAVFYILIITAVPWRKLHKNEQHNRLIGVTVLPFIALLYVEAFIVGISGVSITKNKI 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +  +     N E IG  L++ Y +  E+   +LL+SMIGAI+L  +  +
Sbjct: 122 IETITKNYGNAEVIGIKLFSTYFWAFELMSVLLLISMIGAILLGRKEEK 170


>gi|307318094|ref|ZP_07597530.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti AK83]
 gi|306896135|gb|EFN26885.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium
           meliloti AK83]
          Length = 166

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F LF+ ++++++  +V  RNP++S  +L+  F+  + +F++LGA  +A+I + VY
Sbjct: 1   MHQGSFLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF+IMM+D+   V +     G L +  + +L    +V    +     E    
Sbjct: 61  VGAIMVLFLFVIMMVDVREAVLQRFMPGGNLPALALLVLLGAEMVVLVLWSDRFIE-SPP 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                G+ + ++ K L++ Y  P E++  ILL +++GAIVL  + 
Sbjct: 120 VAERGGDAIRDLSKTLFSDYLLPFEVASVILLAALVGAIVLARKE 164


>gi|269469177|gb|EEZ80719.1| NADH dehydrogenase I chain J [uncultured SUP05 cluster bacterium]
          Length = 203

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 114/201 (56%), Gaps = 10/201 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FY+FSF  + SS  ++  RN   +V  LI +F +AA +++LL AEF+A+  ++
Sbjct: 1   MEFEQILFYVFSFWFVASSLAMIFSRNAAKAVLFLILSFFSAASIWILLEAEFLAITLIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF+I ML+ID        +  F G   +G++ A +I+     ++ SA+  
Sbjct: 61  VYVGAVMVLFLFVIKMLNIDKST----LRAKFAGYLPLGLMVAAVIIAEMVLVLGSAQFG 116

Query: 121 LSRLV------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           L  +          +N+  +   LYT Y YP E++  +LL+++I AI L+ R+  + K+Q
Sbjct: 117 LDVVAAPVRHGADYSNITVLAMQLYTTYVYPFELAAVLLLIAIIAAITLVHRNEINRKKQ 176

Query: 175 DISKQLESNPDNSIVMVKVKS 195
            I +Q+     + + +V + S
Sbjct: 177 SIPEQVNVQAKDRVRLVSIAS 197


>gi|152971208|ref|YP_001336317.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895797|ref|YP_002920533.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae NTUH-K2044]
 gi|262043320|ref|ZP_06016449.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330003564|ref|ZP_08304679.1| NADH-quinone oxidoreductase subunit J [Klebsiella sp. MS 92-3]
 gi|150956057|gb|ABR78087.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238548115|dbj|BAH64466.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039344|gb|EEW40486.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536904|gb|EGF63203.1| NADH-quinone oxidoreductase subunit J [Klebsiella sp. MS 92-3]
          Length = 184

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  VVT  NP++++  LI + +  AG+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVVTHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  +K    G +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGTEIEQERKWLQPGIWIGPAILSAVLLVVIVYAILGINDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                N + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGAAINAKEVGIALFGPYVLAVELASMLLLAGLVVAFHIGREER 163


>gi|239828577|ref|YP_002951201.1| NADH dehydrogenase subunit J [Geobacillus sp. WCH70]
 gi|239808870|gb|ACS25935.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. WCH70]
          Length = 173

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 1/173 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + L F + + +AII   L++ +   ++ V +L+F F++ AGL++LL AEFVA + ++
Sbjct: 1   MSGEYLAFLVLALVAIIGGVLMLNLTKVVHMVIALVFTFISIAGLYVLLSAEFVAAVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  LF IM+     E  E     GF    F  I A      A    ++  +  
Sbjct: 61  IYSGAITIIMLFGIMLTRHREEEKEETTTGGFWRKTFTAI-AVSAFGIAVYLGIYQLDFG 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                   NN E IG  LY+ Y  P EI+  ILL++++GAI+L  ++ +   +
Sbjct: 120 EEAANLHENNTEQIGLALYSHYIIPFEITSIILLVALVGAIILAKKNDKGAPK 172


>gi|315605119|ref|ZP_07880171.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313226|gb|EFU61291.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 325

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 88/197 (44%), Gaps = 3/197 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F   +   +  +  V+  +   ++V  ++   +  A L++   A F+ +  +VV
Sbjct: 13  TGEIILFVCTAIAMVACALGVLFCKKAAHAVICMVGVMLGLAILYIANSAPFMGVAQIVV 72

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF+IM++ I       R+ RG +    +G L   LI+  +      A    
Sbjct: 73  YTGAIMMLFLFVIMLIGIGASDDYVRQSRGAIVGSVLGGLGLALIIATAIVKSSHAAHAP 132

Query: 122 SRLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           S+     +  + ++  +L+ ++   +E++G +L+ + +GA++L    R   K      Q 
Sbjct: 133 SKATPTSDEPITDLAIMLFQEHWLSMELAGALLITAAVGAMLLTHSDRLTAKAD--QAQT 190

Query: 181 ESNPDNSIVMVKVKSGK 197
             +   +      + G+
Sbjct: 191 ARSKMRAFEEKGARIGQ 207


>gi|228911134|ref|ZP_04074940.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           IBL 200]
 gi|228848497|gb|EEM93345.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           IBL 200]
          Length = 162

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAIVL  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLAKKDEKE 157


>gi|227494512|ref|ZP_03924828.1| NADH dehydrogenase subunit J [Actinomyces coleocanis DSM 15436]
 gi|226832246|gb|EEH64629.1| NADH dehydrogenase subunit J [Actinomyces coleocanis DSM 15436]
          Length = 321

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 89/168 (52%), Gaps = 5/168 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F+  +   I  +  V+ ++   Y+  S++   V  A L+LL GA F+ ++ +VVY 
Sbjct: 17  EAVLFFFVATAMIAGALGVLFLKKAAYAAISMVVVMVGLAVLYLLHGAPFMGIVQIVVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++ FLF++MM+ ++       + R ++       LA  L+      + ++A GE   
Sbjct: 77  GAIMMLFLFVLMMIGLNASDEYQSQNRTYITMAVT--LATVLLAGFGITVAYTAMGETQE 134

Query: 124 L---VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                F    VE + K L+  Y + +E++G +L++++IGA++L    R
Sbjct: 135 FKVDAFSDAPVEELAKTLFANYWFSMELAGTLLIVAVIGAVLLTNGDR 182


>gi|228903768|ref|ZP_04067885.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           IBL 4222]
 gi|228968416|ref|ZP_04129409.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791275|gb|EEM38884.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228855857|gb|EEN00400.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           IBL 4222]
          Length = 162

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|311033313|ref|ZP_07711403.1| NADH dehydrogenase subunit J [Bacillus sp. m3-13]
          Length = 179

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 4/168 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F   +  AI    L++ +   ++ V +L+F F++ AG++++L AEFVA + +++Y 
Sbjct: 6   EFIAFLFLAIAAIAGGVLMLNLTKVVHMVVALVFTFISIAGIYVMLSAEFVAAVQILIYS 65

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+ +  LF IM+   + E       R  L    +   AA +     +  +    G    
Sbjct: 66  GAITIIMLFGIMLTRHNDESETSGLGRKILVGAGVLGFAAVMYFGLYSLDL----GSQES 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                NN E IG  +Y +Y  P E++  ILL++++GAI+L  R   D 
Sbjct: 122 ADLHVNNTEQIGVAIYAKYVIPFELTSVILLVALVGAIILARRDDEDT 169


>gi|118498232|ref|YP_899282.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           novicida U112]
 gi|194324416|ref|ZP_03058189.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family
           [Francisella tularensis subsp. novicida FTE]
 gi|208780259|ref|ZP_03247601.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family
           [Francisella novicida FTG]
 gi|254373573|ref|ZP_04989059.1| hypothetical protein FTCG_01670 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254375040|ref|ZP_04990520.1| hypothetical protein FTDG_01228 [Francisella novicida GA99-3548]
 gi|118424138|gb|ABK90528.1| NADH dehydrogenase I, J subunit [Francisella novicida U112]
 gi|151571297|gb|EDN36951.1| hypothetical protein FTCG_01670 [Francisella novicida GA99-3549]
 gi|151572758|gb|EDN38412.1| hypothetical protein FTDG_01228 [Francisella novicida GA99-3548]
 gi|194321481|gb|EDX18966.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family
           [Francisella tularensis subsp. novicida FTE]
 gi|208743908|gb|EDZ90210.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family
           [Francisella novicida FTG]
 gi|332678968|gb|AEE88097.1| NADH-ubiquinone oxidoreductase chain J [Francisella cf. novicida
           Fx1]
          Length = 201

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 116/200 (58%), Gaps = 10/200 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+  + FY F+ +AIIS+ ++V   NP+ SV ++IF F+  A ++++L   ++A++ +V
Sbjct: 1   MVVTDILFYTFASLAIISALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++ MLD+ +E      ++G +G FF  + A  +    +  + ++A   
Sbjct: 61  VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYALAAVVVCAIFATVISYAATNV 114

Query: 121 LSRLVFKG--NNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDI 176
            +  + +G    ++ IG  +++    Y  E+  FILL +M  AI L LR  R+  K  + 
Sbjct: 115 FAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTVNP 174

Query: 177 SKQLESNPDNSIVMVKVKSG 196
           ++Q++    + + MVK+ S 
Sbjct: 175 AQQVKVRAKDRLTMVKMPSN 194


>gi|317048931|ref|YP_004116579.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pantoea sp.
           At-9b]
 gi|316950548|gb|ADU70023.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pantoea sp.
           At-9b]
          Length = 183

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 86/166 (51%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + ++ AG+F  +GA F   + ++VY G
Sbjct: 2   EFAFYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +  ++      +    + + L++    + + +A  +   +
Sbjct: 62  AIMVLFVFVVMMLNLGKSQQDQEREWLKPSLWIGPGIVSLLLLVVMIYAISTAHDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E++  +LL  ++ A  +    R+ 
Sbjct: 120 DGTVIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREERQG 165


>gi|284034160|ref|YP_003384091.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Kribbella
           flavida DSM 17836]
 gi|283813453|gb|ADB35292.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kribbella
           flavida DSM 17836]
          Length = 277

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 88/185 (47%), Gaps = 2/185 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              F+L + + ++++  ++ VR  ++S   L    +  A  +    A F+  + ++VY G
Sbjct: 6   QFAFWLLAPVMVLAAIAMILVRKAVHSALLLATVMICLAVQYAAQDAPFLFAVQIIVYTG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A+++ FLF++M++ +D   +     RG      +  L   ++V  +       +      
Sbjct: 66  AILMLFLFVLMLVGVDASDSLVETIRGQRLLAGLAFLGFAVLVVFAVGNAVYGDPIGLGQ 125

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDISKQLES 182
                N + I ++L+ +Y +  E++  +L+ + +GA++L  R R   K+  +D++++   
Sbjct: 126 AQPDGNPKGIAQLLFGKYVFAFEVTSALLITAAMGAMMLAHRERLTRKKTQRDLAEERIR 185

Query: 183 NPDNS 187
              ++
Sbjct: 186 KYADT 190


>gi|126021018|ref|NP_904241.2| NADH dehydrogenase subunit 6 [Physcomitrella patens subsp. patens]
          Length = 197

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F++     I+ S  VV + N +YS F L   F   + L+  L A+FVA   +++Y
Sbjct: 7   LQEIIFFILEIGVILGSLGVVLLSNIVYSAFFLGLVFFCISLLYFALNADFVAAAQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V  +F +M+++    +   P    G   +  I + +  L+V       +S    +
Sbjct: 67  VGAVNVLIVFAVMLINKPESLKIFPVWTVGDKITLAICLTSFFLLVNIILNTSWSNITVI 126

Query: 122 SRL-----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           +            NV+ IG +L TQY  P E+   +LL+++IGAIV+  R  
Sbjct: 127 TESKGFLESNFTQNVQRIGSLLLTQYLLPFELLSIVLLVALIGAIVIARREN 178


>gi|228942440|ref|ZP_04104978.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228955540|ref|ZP_04117544.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228961557|ref|ZP_04123167.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228975373|ref|ZP_04135929.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982009|ref|ZP_04142303.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           Bt407]
 gi|229050965|ref|ZP_04194515.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH676]
 gi|229130545|ref|ZP_04259501.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-Cer4]
 gi|229147834|ref|ZP_04276176.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST24]
 gi|229153458|ref|ZP_04281636.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1550]
 gi|228630062|gb|EEK86713.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1550]
 gi|228635662|gb|EEK92150.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST24]
 gi|228652884|gb|EEL08766.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228722423|gb|EEL73818.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH676]
 gi|228777770|gb|EEM26043.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           Bt407]
 gi|228784355|gb|EEM32378.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228798175|gb|EEM45178.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804162|gb|EEM50777.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228817281|gb|EEM63368.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 162

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|313206206|ref|YP_004045383.1| NADH dehydrogenase subunit j [Riemerella anatipestifer DSM 15868]
 gi|312445522|gb|ADQ81877.1| NADH dehydrogenase subunit J [Riemerella anatipestifer DSM 15868]
 gi|315023109|gb|EFT36122.1| NADH-ubiquinone oxidoreductase chain J [Riemerella anatipestifer
           RA-YM]
 gi|325336347|gb|ADZ12621.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Riemerella
           anatipestifer RA-GD]
          Length = 165

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 94/164 (57%), Gaps = 1/164 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+ S +A+IS+   V  +NP+YS+ SL+  F + AGL++LL A+F+ ++ ++VY
Sbjct: 1   MEQIVFYIISGLAVISAIYFVAAKNPLYSILSLVITFFSIAGLYILLNAQFLGIVQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FL+++MML++  +    +         F   L     V A    V   E  ++
Sbjct: 61  AGAIMVLFLYVLMMLNLKEKDEGKKNNLMKFAGIFSAGLLLVGFVGALRGYV-GNELPVT 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +       +N+G++L+ +Y  P E++  ++L  ++GA+++  +
Sbjct: 120 EITEGVGLTKNLGRLLFNEYVLPFELASILILSGIVGAVLIGKK 163


>gi|109156519|ref|YP_654384.1| NADH dehydrogenase subunit 6 [Pavona clavus]
 gi|108744138|gb|ABG02358.1| NADH dehydrogenase subunit 6 [Pavona clavus]
          Length = 201

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 103/201 (51%), Gaps = 24/201 (11%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY  +F  + S  +V++  NPI+S+F L+  F  +A  FL LG  FVA++ L++YVGA
Sbjct: 1   MAFYTLAFGVVGSGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGA 60

Query: 66  VIVFFLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-- 112
           + + FLF+IM+L++           + ++         +G+FF   +A+  ++    +  
Sbjct: 61  IAILFLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYAH 120

Query: 113 -------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                  +  + +  +   + K  N+E +G++LY    Y   ++  ILL++++GAIVL  
Sbjct: 121 RALFGAEIRRAWDLAIPWFLMKYQNMEALGRILYIACYYLFILASLILLVALVGAIVLTQ 180

Query: 166 RHRRD----IKRQDISKQLES 182
               +    +KRQDI  Q   
Sbjct: 181 EIGAEAGPMVKRQDIFFQTSR 201


>gi|228924029|ref|ZP_04087305.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835519|gb|EEM80884.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 162

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|227822760|ref|YP_002826732.1| putative NADH-ubiquinone oxidoreductase chain J protein
           [Sinorhizobium fredii NGR234]
 gi|227341761|gb|ACP25979.1| putative NADH-ubiquinone oxidoreductase chain J protein
           [Sinorhizobium fredii NGR234]
          Length = 166

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   FF LF+ +A+I++ +VV  RNP++S  +L+  F+  + +F+LL A  +A++ + VY
Sbjct: 1   MDQGFFLLFAAVAVITALIVVLARNPVHSALALMACFLQISAVFVLLEAPLLAVVQIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGA++V FLF+IMM+D+   V +     G       + +L AE++V   +   FSA    
Sbjct: 61  VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLPALVLLVLLGAEMLVLVLSSERFSATEPA 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           ++    G+ +      L+  Y  P E++  ILL +++GAIVL  +  
Sbjct: 121 AK--GGGDQIREFSTTLFADYLLPFEVASVILLAALVGAIVLARKET 165


>gi|109156406|ref|YP_654397.1| NADH dehydrogenase subunit 6 [Porites porites]
 gi|108744152|gb|ABG02371.1| NADH dehydrogenase subunit 6 [Porites porites]
          Length = 197

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 24/197 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +  F  I S  +V++  NPI+S+F L+  F  +A  FL LG  FVA++ L++YVGA+ + 
Sbjct: 1   MLGFGIIGSGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------ 112
           FLF+IM+L++           + ++         +G+FF   +A+  ++   ++      
Sbjct: 61  FLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLLIGTFFFSEVASSWLIIGGSYTHRAFF 120

Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              +  + +      + K  N+E +G++LY    Y   ++ F+LL++MIGAIVL      
Sbjct: 121 GAEISRAWDLATPWFLMKYQNMEALGRILYITCYYLFILASFVLLVAMIGAIVLTQEVGS 180

Query: 170 D----IKRQDISKQLES 182
           +    +KRQDI  Q   
Sbjct: 181 EVGPLVKRQDIFFQTSR 197


>gi|75294069|sp|Q6YXQ0|NU6C_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|34494824|dbj|BAC85091.1| NADH dehydrogenase ND6 subunit [Physcomitrella patens subsp.
           patens]
          Length = 200

 Score =  120 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F++     I+ S  VV + N +YS F L   F   + L+  L A+FVA   +++Y
Sbjct: 10  LQEIIFFILEIGVILGSLGVVLLSNIVYSAFFLGLVFFCISLLYFALNADFVAAAQILIY 69

Query: 63  VGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGAV V  +F +M+++    +   P    G   +  I + +  L+V       +S    +
Sbjct: 70  VGAVNVLIVFAVMLINKPESLKIFPVWTVGDKITLAICLTSFFLLVNIILNTSWSNITVI 129

Query: 122 SRL-----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           +            NV+ IG +L TQY  P E+   +LL+++IGAIV+  R  
Sbjct: 130 TESKGFLESNFTQNVQRIGSLLLTQYLLPFELLSIVLLVALIGAIVIARREN 181


>gi|269926640|ref|YP_003323263.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790300|gb|ACZ42441.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 173

 Score =  120 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 93/171 (54%), Gaps = 5/171 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + S  F LF+ + ++ + +VV  RNP++ V  ++  FVN A +F+LL A+F+A++ ++
Sbjct: 1   MDLVSWLFILFAVIGLLGAVMVVVARNPVHCVLFMLLTFVNIAAMFVLLDAQFIAILQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAE 118
           VY GA++V FLF++M+L            R    +     G+   E+IV     ++ +  
Sbjct: 61  VYSGAILVLFLFVVMLLQQAERPIPMLAARVQLPVALVVGGLFLLEIIVVTFGNIITAGR 120

Query: 119 G---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                   +   G NV+ +G+ L+T++  P EI+  +LL++ IGA+ L   
Sbjct: 121 KGGDTPQAIAQAGGNVQALGEQLFTRWLLPFEIASVLLLVAAIGALYLAKE 171


>gi|229112706|ref|ZP_04242242.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock1-15]
 gi|228670838|gb|EEL26146.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock1-15]
          Length = 162

 Score =  120 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSVDFANESTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|299830440|ref|YP_003734811.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
 gi|299830499|ref|YP_003734870.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
 gi|269810817|gb|ACZ43846.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
 gi|269810876|gb|ACZ43905.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
 gi|269812130|gb|ACZ44428.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
 gi|269812189|gb|ACZ44487.1| NADH dehydrogenase subunit 6 [Pythium ultimum]
          Length = 213

 Score =  120 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 113/212 (53%), Gaps = 18/212 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++FF+ FS +A+ S+  V+   N IYS F LI  FVN+ GL L+   EF++++ ++
Sbjct: 1   MNFETIFFFFFSSIALTSAIFVIYSTNTIYSAFFLILVFVNSTGLLLISEIEFISIMLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-- 117
           +YVGA+ V FLF+IMMLDI++ +        G+L   F+      L        +F+   
Sbjct: 61  IYVGAITVLFLFVIMMLDINVLIDKNNNNNFGYLPIIFLISFVFFLETFVMFSKIFTTYY 120

Query: 118 -------------EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                          ++   +    N+E IG++LY+ YA+    +G ILL+++IGA+ L 
Sbjct: 121 HLIEQSFFKNDLFYNQVIYQLDNITNIETIGQILYSYYAFFFLAAGIILLIALIGAVTLT 180

Query: 165 LRHRR--DIKRQDISKQLESNPDNSIVMVKVK 194
            + ++  +   +++ KQL  N   ++  +K K
Sbjct: 181 KKEKKKQNFLTKNLYKQLSRNSLQAVFNIKNK 212


>gi|152993798|ref|YP_001359519.1| NADH dehydrogenase subunit J [Sulfurovum sp. NBC37-1]
 gi|151425659|dbj|BAF73162.1| NADH-quinone oxidoreductase, chain J [Sulfurovum sp. NBC37-1]
          Length = 187

 Score =  120 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 92/165 (55%), Gaps = 3/165 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLFS + I    + V  +N +Y++ SL    V  +G F +LGA+F+ ++ L+VYV
Sbjct: 3   ETIAFYLFSALTIGLFLITVMSKNVLYAMTSLAAGMVLISGFFFILGADFLGVVQLIVYV 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA++  + F +M  D   ++ E       +  F +G L+A  +V      +++   +   
Sbjct: 63  GAIMALYSFAMMFFDATKDIKEKNTNPALI--FVLGGLSALALVLMFAAPIYNESIQALY 120

Query: 124 LVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            + +G  N +++G VL+T+Y  P E++  +LL++MI  I+L  + 
Sbjct: 121 PMHEGVGNAQDVGIVLFTKYLVPFEVAAVMLLVAMIAGIILAGKK 165


>gi|229181542|ref|ZP_04308868.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           172560W]
 gi|228601910|gb|EEK59405.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           172560W]
          Length = 162

 Score =  120 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
            AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F 
Sbjct: 2   FAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFG 61

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133
           IM+   + E       R ++  FF  +    ++  A N + F+ E     L    NN   
Sbjct: 62  IMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQ 120

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           IG +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 121 IGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|159899733|ref|YP_001545980.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892772|gb|ABX05852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 174

 Score =  120 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++  F   + +A+ ++  +V   N ++S   LI  F + A L+ LL A F+  + + VY
Sbjct: 1   METFLFITTAIVAVGAALAMVLSSNAVHSALFLILNFCSVAILYFLLRAPFLGAVQVTVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IM+L  +       K      +   G++    ++    ++ +     + 
Sbjct: 61  AGAIMVLFLFVIMLLGAENAELGEEKIGWQKPA---GLVLGVALLAEIGYVAYRGTTLID 117

Query: 123 RLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             V    N+     I   L++ Y  P E+   +LL++++G +VL  R 
Sbjct: 118 APVADATNIGAPTTISAKLFSTYLLPFEVISILLLIAVVGTVVLTRRR 165


>gi|332184787|gb|AEE27041.1| NADH-ubiquinone oxidoreductase chain J [Francisella cf. novicida
           3523]
          Length = 201

 Score =  120 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 116/200 (58%), Gaps = 10/200 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+ ++ FY F+ +AIIS+ ++V   NP+ SV ++IF F+  A ++++L   ++A++ +V
Sbjct: 1   MVVTNILFYTFASLAIISALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++ MLD+ +E      ++G +G FF  + A  +    +  + ++A   
Sbjct: 61  VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYALAAVVVCAIFATVISYAATNV 114

Query: 121 LSRLVFKG--NNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDI 176
            +  + +G    ++ IG  ++     Y  E+  FILL +M  AI L LR  R+  K  + 
Sbjct: 115 FAGAMMQGGVGGLKIIGLTMFNNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTVNP 174

Query: 177 SKQLESNPDNSIVMVKVKSG 196
           ++Q++    + + MVK+ S 
Sbjct: 175 AQQVKVRAKDRLTMVKMPSN 194


>gi|223937085|ref|ZP_03628993.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium
           Ellin514]
 gi|223894366|gb|EEF60819.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium
           Ellin514]
          Length = 164

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 3/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FY+F+ + +I    V+  RNPI S   L+ +  + AGLF+LL A F+  + ++VY
Sbjct: 1   MPEYLFYIFAALTLICGAFVIINRNPINSAMCLVLSIGSMAGLFVLLNAFFLGAVQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+V FLF+IM+LD+    AE R++    G+       A +       +  S +   +
Sbjct: 61  AGAVMVLFLFVIMLLDLK---AEERRRVNLFGAVTGVTSVAAIAFIFYKALAASKDQLPN 117

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                      +G  L++ Y  P EI   +LL++M+G I+L  +
Sbjct: 118 VTDRAVGGTVELGTKLFSDYLLPFEILSILLLVAMVGVILLSKK 161


>gi|225850950|ref|YP_002731184.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit
           j) (ndh-1 subunit j) [Persephonella marina EX-H1]
 gi|225645392|gb|ACO03578.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit
           j) (ndh-1 subunit j) [Persephonella marina EX-H1]
          Length = 176

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + ++ FY FS +AI+S+  VV  +N IY+V SLI   +  +GLF  +GAE +  + ++
Sbjct: 1   MELNTVAFYTFSTLAILSAVGVVFFKNIIYAVLSLISTLIMVSGLFFTMGAELIGGLQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y  A++VF++ +I  +            +  L S  +G L    +   S +  + A   
Sbjct: 61  IYAVAIVVFYVLVISTVP--EFKGRSVDPKYMLTSIPVGFLIFIELAYVSLYGAWEANKG 118

Query: 121 L--SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +    +V +  NV+ +  +L+T+Y +P E++  ILL++MIGAI++  +
Sbjct: 119 IFTPEVVNEVGNVKAVATMLFTKYLFPFEVASLILLVAMIGAILIGRK 166


>gi|223931106|ref|YP_002586968.1| NADH-plastoquinone oxidoreductase subunit 6 [Syntrichia ruralis]
 gi|219562320|gb|ACL27651.1| NADH-plastoquinone oxidoreductase subunit 6 [Syntrichia ruralis]
          Length = 193

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 10/174 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + F+L     I+ S  VV + N +YS F L   F   + L+  L A+FVA   +++Y
Sbjct: 8   LHEIIFFLLEVGIILGSLGVVLLTNIVYSAFFLGLVFFCISILYFALNADFVAAAQILIY 67

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  +F +M+++     ++       +G     ++   L       ++ ++   ++
Sbjct: 68  VGAVNVLIVFAVMLIN--KPQSKKLFSFWTIGDKITFLVCLSLFFLLVTIILNTSWSSIT 125

Query: 123 RLVFK--------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            +             NV+ IG +L TQ+  P E+   +LL+++IGAIV+  R  
Sbjct: 126 LITESKKFLNFDFTQNVQRIGYLLLTQFLLPFELLSIVLLVALIGAIVIARREN 179


>gi|290489842|gb|ADD31328.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Antirrhinum
           majus]
          Length = 178

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 8/172 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ S  VV   NPIYS FSL       +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLILGSLGVVLFPNPIYSAFSLGLVLFCISLFYILSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M ++          +   +G     I+   L +     +  ++   + 
Sbjct: 67  VGAINVLIIFAVMFMNGSEYYDYEDFQPWTVGDGVTSIVCTSLFISLLTTIPDTSWYGIV 126

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 127 WTTKSNQILEQDLISNSQQIGIHLATDFFLPFELISIILLVALIGAISIARQ 178


>gi|301061344|ref|ZP_07202126.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
 gi|300444663|gb|EFK08646.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
          Length = 299

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 7/169 (4%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            ++S+ L V+ R  +++V  LI +F   A LF LLGA F+A + +++Y GAV+V FLFII
Sbjct: 136 LVVSTGLAVSQRKLVHAVVFLIISFFATALLFYLLGAPFLAALEVIIYAGAVMVMFLFII 195

Query: 75  MMLDIDIEVAE--PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
           M L ++ E  E     +  F      GI    L+          A  +L+          
Sbjct: 196 MTLKLEKEEPESGTSLRPWFPAILLGGISLVLLVTLLWMGQDHGALLKLAMAAP-----R 250

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
            +GK L+ ++ + +E+  F+L +++ GA+ L   H++  K  D  ++  
Sbjct: 251 EVGKYLFREFWFSVEVVSFLLFVALAGALYLAKEHKKPTKTADSQQEAS 299


>gi|20065788|ref|NP_612820.1|ND6_16049 NADH dehydrogenase subunit 6 [Acropora tenuis]
 gi|5817779|gb|AAD52916.1|AF152244_3 NADH dehydrogenase subunit 6 [Acropora tenuis]
 gi|19908468|gb|AAM02911.1|AF338425_5 NADH dehydrogenase subunit 6 [Acropora tenuis]
          Length = 197

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 24/197 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F  + S  +V++  NPI+S+F LI  F+ +A  FL LG  FVA++ L++YVGA+ + 
Sbjct: 1   MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------ 112
           FLF+IM+L++           + ++         +G+FF   +A+  ++    +      
Sbjct: 61  FLFVIMLLNLTDFPPAFRLGGEADMTNYIPIGLVIGTFFFSEVASSWLIIGGPYTPQGFL 120

Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              +  + +  +   + K  N+E +G++LY    Y   ++ FILL++M+GAIVL      
Sbjct: 121 GAEIGGAWDLAIPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLTQEIGS 180

Query: 170 D----IKRQDISKQLES 182
           +    +KRQDI  Q   
Sbjct: 181 EVGPVVKRQDIFFQTSR 197


>gi|289548977|ref|YP_003473965.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis
           albus DSM 14484]
 gi|289182594|gb|ADC89838.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis
           albus DSM 14484]
          Length = 163

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 95/165 (57%), Gaps = 3/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F + S   I+S   V+ ++NP++ V S +   +  AG+FL LGAE +A + L++Y
Sbjct: 1   MEWVIFGILSLWLILSVLGVLFLKNPVHVVLSFLSVVLATAGIFLHLGAELLAGLQLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
             A++VF++ ++  +  +      R +  +L  F + +    L+V A +++ +S      
Sbjct: 61  AVAIVVFYVLVVTTIPWE---KVKRFEGIYLREFLLAVPFFLLLVVALSYLAWSGSFATK 117

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                G+NV ++GKVL+T Y +P E++  ILL++M+GAI+L  + 
Sbjct: 118 GFPLSGDNVRDVGKVLFTSYLFPFELASVILLIAMVGAILLGRKE 162


>gi|229014462|ref|ZP_04171580.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides DSM
           2048]
 gi|229020512|ref|ZP_04177259.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1273]
 gi|229026729|ref|ZP_04183066.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1272]
 gi|229063944|ref|ZP_04200243.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH603]
 gi|229136109|ref|ZP_04264863.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST196]
 gi|229170001|ref|ZP_04297694.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH621]
 gi|228613519|gb|EEK70651.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH621]
 gi|228647354|gb|EEL03435.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST196]
 gi|228716350|gb|EEL68060.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH603]
 gi|228734577|gb|EEL85234.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1272]
 gi|228740783|gb|EEL91034.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1273]
 gi|228746812|gb|EEL96697.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides DSM
           2048]
          Length = 162

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 84/152 (55%), Gaps = 1/152 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + FS +     L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNQSTQGSLPLHENNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           G +LY++Y  P E++  ILL++++GAI+L  +
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKK 153


>gi|172072939|ref|YP_001806700.1| NADH dehydrogenase subunit 6 [Cryptomeria japonica]
 gi|221272319|sp|B1VKI7|NU6C_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|171854958|dbj|BAG16698.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica]
 gi|239794326|dbj|BAH73323.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica]
 gi|239794409|dbj|BAH73405.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica]
          Length = 180

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I     VV + N IYS  SL    +  +  +++L A+FVA+  +++Y+GAV +  LF +M
Sbjct: 20  IFGGIGVVLLTNIIYSALSLGLVLICISFFYIILNADFVAVAQILIYIGAVNILILFAVM 79

Query: 76  MLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-GELSRLVFK---GN 129
           +++       A P      + S     L   LI    N   F     + S  + +    N
Sbjct: 80  LMNNPKYPNYAPPWTVGDSISSIVCTSLFCSLITIILNISWFGISLTQKSDQMLERDLTN 139

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           N++ IG  L T +  P E+   ILL+++IGAI +  R   
Sbjct: 140 NIQRIGAHLSTDFFLPFELISIILLVALIGAITIARREET 179


>gi|330470208|ref|YP_004407951.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Verrucosispora maris AB-18-032]
 gi|328813179|gb|AEB47351.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Verrucosispora maris AB-18-032]
          Length = 204

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    +       +A+ S  LVV+ R+ + +   L+      AG++L+L AE VA + ++
Sbjct: 1   MTGVDVLLLALGAVAVGSGVLVVSTRHLVRAGLYLVVCLGAVAGMYLVLTAELVAWVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGAV+V  LF +M+    I  ++   + G+  +   G +   L     +   ++    
Sbjct: 61  IYVGAVVVLLLFAVMLTRAPIGASDDLDRPGWPAALIGGGVGLGLAALLIDAFRWTTV-- 118

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
               + +    E IG+ ++  +  P E+   +LL +++GAIVL    R DI R
Sbjct: 119 ---ELPEAGTAERIGEQVFASWVLPFEVLSILLLSALVGAIVL---SRPDIGR 165


>gi|56791568|gb|AAW30322.1| NADH dehydrogenase subunit 6 [Asarum sp. Qiu 96018]
          Length = 166

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI+ VV++GA+   
Sbjct: 1   VLSSPALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAAS 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124
           FLF++MM +I I        R    S  IG IL  E+     N  +       +      
Sbjct: 61  FLFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120

Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                 V    N E +G +LYT Y     +   ILL++MIGAIVL 
Sbjct: 121 KVHAGKVRSWTNFETLGNLLYTYYVVWFLVPSPILLVAMIGAIVLT 166


>gi|56707220|ref|YP_169116.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89257081|ref|YP_514443.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110669690|ref|YP_666247.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315438|ref|YP_764161.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134301255|ref|YP_001121223.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156503295|ref|YP_001429360.1| NADH dehydrogenase I, subunit J [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009473|ref|ZP_02274404.1| NADH dehydrogenase i, j subunit [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187930997|ref|YP_001890981.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224456281|ref|ZP_03664754.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254368317|ref|ZP_04984335.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254368974|ref|ZP_04984987.1| hypothetical protein FTAG_00804 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371436|ref|ZP_04987437.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874058|ref|ZP_05246768.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|290952998|ref|ZP_06557619.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313818|ref|ZP_06804391.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|56603712|emb|CAG44673.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144912|emb|CAJ80260.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320023|emb|CAL08056.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130337|gb|ABI83524.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134049032|gb|ABO46103.1| NADH dehydrogenase I subunit J [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254125|gb|EBA53219.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|151569675|gb|EDN35329.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156253898|gb|ABU62404.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157121895|gb|EDO66065.1| hypothetical protein FTAG_00804 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187711906|gb|ACD30203.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254840057|gb|EET18493.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158328|gb|ADA77719.1| NADH dehydrogenase i, j subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 201

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 115/200 (57%), Gaps = 10/200 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+  + FY F+ +AII + ++V   NP+ SV ++IF F+  A ++++L   ++A++ +V
Sbjct: 1   MVVTDILFYTFASLAIIFALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++ MLD+ +E      ++G +G FF  + A  +    +  + ++A   
Sbjct: 61  VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYALAAVVVCAIFATVISYAATNV 114

Query: 121 LSRLVFKG--NNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDI 176
            +  + +G    ++ IG  +++    Y  E+  FILL +M  AI L LR  R+  K  D 
Sbjct: 115 FAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTVDP 174

Query: 177 SKQLESNPDNSIVMVKVKSG 196
           ++Q++    + + MVK+ S 
Sbjct: 175 AQQVKVRAKDRLTMVKMPSN 194


>gi|226355368|ref|YP_002785108.1| NADH dehydrogenase (quinone) subunit J [Deinococcus deserti VCD115]
 gi|226317358|gb|ACO45354.1| putative NADH dehydrogenase (quinone), subunit J (NADH-quinone
           oxidoreductase, subunit J) [Deinococcus deserti VCD115]
          Length = 199

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F L   +A++   + +  RN +++   L+   +  AGLF  + A F+A I ++VY GA
Sbjct: 3   LAFILLGALALVGGVITIAARNAVHASLGLVGTLLCVAGLFATMNASFLAAIQVIVYAGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGF--LGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           ++V FLF+IMML+ +  V           L S    +LA   +V A  +       E + 
Sbjct: 63  IMVLFLFVIMMLNANAPVTGRDPVPFVRELASIGGVLLAGAFVVLAFTYRDPRPLAEGAE 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +  G     +G+ L T++  P E    +LL++++GA+ L+ R
Sbjct: 123 ALRGGG-AGPVGETLLTRFLLPFEAVSILLLVAIVGAVALVQR 164


>gi|229105886|ref|ZP_04236512.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-28]
 gi|229118790|ref|ZP_04248140.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock1-3]
 gi|228664660|gb|EEL20152.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock1-3]
 gi|228677545|gb|EEL31796.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-28]
          Length = 162

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + FS E     L     N   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|229164239|ref|ZP_04292173.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           R309803]
 gi|228619261|gb|EEK76153.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           R309803]
          Length = 163

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 82/156 (52%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  F +    A +    ++    +       L    NN   I
Sbjct: 63  MLTKHNAENESRLTLRKWIIFFAVVAFGAVMYFAVNSIDFSTQSTTQGSLPLHENNTLQI 122

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 123 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 158


>gi|288817726|ref|YP_003432073.1| NADH dehydrogenase chain J [Hydrogenobacter thermophilus TK-6]
 gi|288787125|dbj|BAI68872.1| NADH dehydrogenase chain J [Hydrogenobacter thermophilus TK-6]
 gi|308751325|gb|ADO44808.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobacter thermophilus TK-6]
          Length = 177

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 97/167 (58%), Gaps = 2/167 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q + F LFS +A++SS  VV + NP+Y + SL+ + +  AG+F + GAE V  + L++Y
Sbjct: 2   IQWITFLLFSLLAVVSSLGVVLLPNPVYVILSLLSSLIAIAGVFFVAGAELVGALQLLIY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120
             AV VF++F++  +  +  + +    R  G L    + +L  E+++  S  +  S +G+
Sbjct: 62  AVAVTVFYVFVLTAVPWEKALKKDSHYRVEGVLSFPILLLLYFEILIVFSLGVSASPKGQ 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +  L  K  N E IG +L+++Y +  E+   +LL+ MIGA+++  + 
Sbjct: 122 IKELSKKFGNTEVIGSILFSKYFFAFELVSLVLLIGMIGAVIIGRKE 168


>gi|148244398|ref|YP_001219092.1| NADH dehydrogenase I chain J [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326225|dbj|BAF61368.1| NADH dehydrogenase I chain J [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 203

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/195 (32%), Positives = 107/195 (54%), Gaps = 2/195 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FY+FSF  ++SS  ++  RN   +V  L+ AF +AA +++LL AEF+A+I ++
Sbjct: 1   MGFEQIIFYIFSFWFVVSSLAMIFSRNAAKAVLFLVLAFFSAASIWILLEAEFLAIILIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118
           VYVGAV+V FLF+I ML+ID    + R          + I+      +V  SN       
Sbjct: 61  VYVGAVMVLFLFVIKMLNIDKSTIKARFTGYLPLRLIVAIIIIIEMSLVLGSNQFGLDVF 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
               R     +N+  +   +YT Y YP E++  +LL+++I AI L+ R+    K+Q IS+
Sbjct: 121 SVPERHSEDYSNITVLAMQIYTTYVYPFELAAVLLLIAIIAAITLVHRNDTSRKKQSISE 180

Query: 179 QLESNPDNSIVMVKV 193
           Q+     + + +V +
Sbjct: 181 QVNVQAKDRVRLVSI 195


>gi|197253931|ref|YP_002149705.1| NADH dehydrogenase subunit 6 [Stylophora pistillata]
 gi|169809260|gb|ACA84096.1| NADH dehydrogenase subunit 6 [Stylophora pistillata]
          Length = 187

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
             F + F    I S  +VV+  NP+ S+F L+  F+N+A  FLLLG +F+A++ L++YVG
Sbjct: 2   EFFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--------VCASNFMVFS 116
           A+ + FLF+IM+L++       +++        IG +             +   +F + +
Sbjct: 62  AIAILFLFVIMLLNLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLFLGSFQIEN 121

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +      +   +N+E +G++LY        ++ FILL++MIG IVL        K+QD+
Sbjct: 122 WDLSFPWFLISYHNIEALGQILYVSCFCLFLLASFILLVAMIGVIVLTQETEFLSKKQDL 181

Query: 177 SKQLES 182
             Q+  
Sbjct: 182 FFQINR 187


>gi|229087782|ref|ZP_04219904.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-44]
 gi|228695541|gb|EEL48404.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-44]
          Length = 164

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 1/159 (0%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S  AII   L++ +   ++ + +L+F F++ AGL+ LL AEFV +  +++Y GA+ +  +
Sbjct: 2   SLTAIIGGILMLNLTKVMHMMLALVFTFLSIAGLYFLLSAEFVGVAQILIYSGAITIIMI 61

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
           F IM+   D E       R  L  F   +    ++  A N + F+ +     L     N 
Sbjct: 62  FGIMLTKHDAESESSFSFRKLL-IFLAVVAFGGVMYFAVNNIDFTNQNVQGSLPLHEQNT 120

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             IG +LY++Y  P E++  ILL++++GAIVL  +   +
Sbjct: 121 LQIGTLLYSKYVIPFELTSVILLVALVGAIVLAKKDEEE 159


>gi|134299886|ref|YP_001113382.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Desulfotomaculum reducens MI-1]
 gi|134052586|gb|ABO50557.1| NADH dehydrogenase subunit J [Desulfotomaculum reducens MI-1]
          Length = 172

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L S + + S+ LVVT++N ++SV  LI  F+  AG+FLLL A+FVAM+ ++VY GA
Sbjct: 8   IAFVLLSGLVLGSALLVVTLKNLVHSVLWLIVTFIGVAGIFLLLNADFVAMVQVLVYAGA 67

Query: 66  VIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           V +   F +M++   D+E + P   R  +    IG L   +       ++      LS  
Sbjct: 68  VCIMIAFGVMLVQRQDMENSNPMNSRYKIAFPLIGGLFISI-----GLLMARTRWTLSGE 122

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 V+ +  +L T Y  P E++  +L +++ GA+VL+   + +  R
Sbjct: 123 AVPEKTVQGLAPILLTDYVIPFEVAAVLLTVALTGALVLVKEVKANGDR 171


>gi|157144286|ref|YP_001456707.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis]
 gi|157149641|ref|YP_001456721.1| NADH dehydrogenase subunit 6 [Pocillopora eydouxi]
 gi|139471334|gb|ABO77151.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis]
 gi|139471349|gb|ABO77165.1| NADH dehydrogenase subunit 6 [Pocillopora eydouxi]
 gi|169809246|gb|ACA84083.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis]
          Length = 187

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
             F + F    I S  +VV+  NP+ S+F L+  F+N+A  FLLLG +F+A++ L++YVG
Sbjct: 2   EFFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--------VCASNFMVFS 116
           A+ + FLF+IM+L++       +++        IG +             +   +F + +
Sbjct: 62  AIAILFLFVIMLLNLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLLLGSFQIEN 121

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +      +   +N+E +G++LY        ++ FILL++M+G IVL        K+QD+
Sbjct: 122 WDLSFPWFLISYHNIEALGQILYVSCFCLFLLASFILLVAMMGVIVLTQETESLSKKQDL 181

Query: 177 SKQLES 182
             Q+  
Sbjct: 182 FFQINR 187


>gi|109156477|ref|YP_654410.1| NADH dehydrogenase subunit 6 [Siderastrea radians]
 gi|108744166|gb|ABG02384.1| NADH dehydrogenase subunit 6 [Siderastrea radians]
          Length = 197

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 24/197 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F  + S  +V++  NPI+S+F LI  F  +A  FL LG  FVA++ L++YVGA+ + 
Sbjct: 1   MLAFGVVGSGIMVISALNPIHSIFWLIVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--- 115
           FLF+IM+L++           + ++         +G+FF   +A+  ++    +      
Sbjct: 61  FLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYTHRAFF 120

Query: 116 ------SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                 + +      + K  N+E +G++LY    Y   ++  ILL++MIGAIVL      
Sbjct: 121 GAEIRKAWDLAAPWFLMKYQNMEALGRILYIACYYLFILASLILLVAMIGAIVLTQEVGS 180

Query: 170 D----IKRQDISKQLES 182
           +    +KRQDI  Q   
Sbjct: 181 EVGPMVKRQDIFFQTSR 197


>gi|294140407|ref|YP_003556385.1| NADH dehydrogenase I subunit J [Shewanella violacea DSS12]
 gi|293326876|dbj|BAJ01607.1| NADH dehydrogenase I, J subunit [Shewanella violacea DSS12]
          Length = 294

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F + + +AIIS+ L V+  N ++++  L+   +  A +F LLG+ F A + ++VY
Sbjct: 1   MIDIIFCITAAVAIISALLTVSAHNVVHALLYLVTMMLAIALIFFLLGSPFAAALQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119
            GAV+V F+F+ MML          ++          ++ + L+V     +   + G   
Sbjct: 61  AGAVMVLFVFVTMMLHQGERSLVAERQLFNPKVAKGPLILSMLLVIELTMISLGSVGLHQ 120

Query: 120 -ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             L+  +     V+ +   L+  Y   + ++  +LL +++ AI +  +
Sbjct: 121 EILTSPLPVEQTVKQLAIQLFGSYRVLVVLAAIMLLTALVSAIHITKQ 168


>gi|284039759|ref|YP_003389689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma
           linguale DSM 74]
 gi|283819052|gb|ADB40890.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma
           linguale DSM 74]
          Length = 185

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L FY F+ + +  +  V+  RN +Y+ F L+      AGLF+L GA+F+A+  +++Y
Sbjct: 1   MVQLAFYFFAALTLGGALAVLLTRNVLYAAFFLLLTLFGVAGLFVLAGADFLAVAQIMIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----------LGSFFIGILAAELIVCASN 111
           VG V+V  +F +M+        +   ++              G     ++A  L V    
Sbjct: 61  VGGVLVLVIFGVMLTHKPEPPTDLNSQQPNRIVSANRFAKGAGWIIPVLVAGALFVALQT 120

Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
            +  S    L +     N    IGK L T+Y  P EI+G +LL +++GA  L   H +  
Sbjct: 121 LLARSNFALLDQPAGWQNTTTVIGKQLMTEYVVPFEIAGILLLAALVGATYLAASHTKSS 180

Query: 172 K 172
           +
Sbjct: 181 R 181


>gi|311278763|ref|YP_003940994.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Enterobacter
           cloacae SCF1]
 gi|308747958|gb|ADO47710.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Enterobacter
           cloacae SCF1]
          Length = 184

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 82/166 (49%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +    
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPGILSVVLLAVIVYGIIGLNDQGIDG 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              G   + +G  L+  Y   +E++  +LL  ++ A  L    R+ 
Sbjct: 122 NAIG--AKEVGIALFGPYVLAVELASMLLLAGLVVAFHLGREERQG 165


>gi|304398208|ref|ZP_07380082.1| NADH dehydrogenase (quinone) [Pantoea sp. aB]
 gi|308187596|ref|YP_003931727.1| NADH dehydrogenase I chain J [Pantoea vagans C9-1]
 gi|304354074|gb|EFM18447.1| NADH dehydrogenase (quinone) [Pantoea sp. aB]
 gi|308058106|gb|ADO10278.1| NADH dehydrogenase I chain J [Pantoea vagans C9-1]
          Length = 183

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + ++ AG+F  +GA F   + ++VY G
Sbjct: 2   EFAFYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++  +  +  ++      +    + + L++    + + +A  +   +
Sbjct: 62  AIMVLFVFVVMMLNLGKQTEKQEREWLSPSLWIGPGIVSLLLLVVMIYAILTANDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E++  +LL  ++ A  +    R+ 
Sbjct: 120 DGTIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREERQG 165


>gi|193216256|ref|YP_001997455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089733|gb|ACF15008.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chloroherpeton thalassium ATCC 35110]
          Length = 178

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY F+ ++++S   VV  RN IYS FSL+F F   A +++ L A+FVA+  +VVYVG +
Sbjct: 9   IFYFFAVLSVVSGMFVVFSRNIIYSAFSLLFTFFGVAAIYVFLSADFVAVTQIVVYVGGI 68

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V  LF +M  +   +V        F+    I +     ++     M++ A         
Sbjct: 69  LVLLLFGVMFTNKIYQVQLKTDVLNFIPGLLIMLATMGALLYT---MIYRANWFHGEKEI 125

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            G  VE IG  + + Y  P EI+  +LL+++IGA  L    
Sbjct: 126 SGTVVEQIGVEIMSNYVLPFEIASIVLLVALIGAAFLARAE 166


>gi|145932352|ref|YP_001165400.1| NADH dehydrogenase subunit 6 [Phytophthora sojae]
 gi|110169595|gb|ABG54061.1| NADH dehydrogenase subunit 6 [Phytophthora sojae]
          Length = 236

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 39/230 (16%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++FFY FS +A+ S+  V+   N IYS F LI  F N+ GL L+   EF++++ ++
Sbjct: 1   MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----------LGSFFIGILAAELIVCA 109
           +YVGA+ V FLF+IMMLD+++ + + +    F           +      I+ +++    
Sbjct: 61  IYVGAITVLFLFVIMMLDVNVLIDKNKINNNFGYLPIIFLISFIFFLETFIMFSKVFTSY 120

Query: 110 SNFMVFSAEGELSRLVF----------------------------KGNNVENIGKVLYTQ 141
            + +  S   +    +F                               N+E IG++LY+ 
Sbjct: 121 YHLINNSFFNQEINTLFFFKDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILYSY 180

Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMV 191
           YA+   ++G ILL+++IGA+ L  + ++ I +Q+I KQL  N   +I  V
Sbjct: 181 YAFFFLVAGIILLIALIGAVTLTKKEKKKIFKQNIYKQLSRNSLKAIFNV 230


>gi|229175967|ref|ZP_04303464.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus MM3]
 gi|228607561|gb|EEK64886.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus MM3]
          Length = 162

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTQHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|328953784|ref|YP_004371118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454108|gb|AEB09937.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 165

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F+L +  A+IS  +VV   NP+ S   L+  F   AG++LL  A+F+A + ++VY GA
Sbjct: 3   IIFFLLAATALISGIMVVIQVNPVRSALYLVLNFFALAGIYLLANAQFIAAVQIIVYAGA 62

Query: 66  VIVFFLFIIMMLDIDIEV---AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           ++V FLF+IM+L++       A+    +  LG+      AA +I   +   +   +G   
Sbjct: 63  IMVLFLFVIMLLNLRQPEEGGAQLHIGQKILGASLATGTAALVIYTITRLKLPPGKG--- 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +       E + K L+T Y  P E++  +LL++++GA++L    
Sbjct: 120 -MAADFGTTEMVAKSLFTDYLLPFEVTSILLLVAVVGAVILAKTK 163


>gi|312172995|emb|CBX81250.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC BAA-2158]
          Length = 184

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +  K     G +    L + L++    + + S   +    
Sbjct: 62  AIMVLFVFVVMMLNLGGAEVQQEKDWLKPGMWIGPGLLSLLLLVTLVYAILSVNDQGIDG 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                  + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 122 TMIDG--KQVGISLFGPYLLAVELASMLLLAGLVVAFHIGREQR 163


>gi|62161342|ref|YP_214970.1| NADH dehydrogenase subunit 6 [Montipora cactus]
 gi|58220707|gb|AAW67970.1| NADH dehydrogenase subunit 6 [Montipora cactus]
          Length = 197

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 103/197 (52%), Gaps = 24/197 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F  + S  +V++  NPI+S+F LI  F+ +A  FL LG  FVA++ L++YVGA+ + 
Sbjct: 1   MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------ 112
           FLF+IM+L++           + ++         +G+FF   +A+  ++    +      
Sbjct: 61  FLFVIMLLNLTDFPPAFRLGGEADMTNYIPIGLVVGTFFFSEVASSWLIIGGPYTPRVFL 120

Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              +  + +  L   + K  N+E +G++LY    Y   ++ FILL++M+GAIVL      
Sbjct: 121 GAEIGRAWDLALPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLTQEIGS 180

Query: 170 D----IKRQDISKQLES 182
           +    +KRQDI  Q   
Sbjct: 181 EIGPVVKRQDIFFQTSR 197


>gi|292488835|ref|YP_003531722.1| NADH dehydrogenase I subunit J [Erwinia amylovora CFBP1430]
 gi|292899986|ref|YP_003539355.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC 49946]
 gi|291199834|emb|CBJ46958.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC 49946]
 gi|291554269|emb|CBA21583.1| NADH dehydrogenase I chain J [Erwinia amylovora CFBP1430]
          Length = 184

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +  K     G +    L + L++    + + S   +    
Sbjct: 62  AIMVLFVFVVMMLNLGGAEVQQEKDWLKPGMWIGPGLLSLLLLVTLVYAILSVNDQGIDG 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                  + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 122 TMIDG--KQVGISLFGPYVLAVELASMLLLAGLVVAFHIGREQR 163


>gi|228988518|ref|ZP_04148607.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229142033|ref|ZP_04270558.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST26]
 gi|229199416|ref|ZP_04326081.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1293]
 gi|228584130|gb|EEK42283.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1293]
 gi|228641322|gb|EEK97628.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           BDRD-ST26]
 gi|228771234|gb|EEM19711.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 162

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|321268733|gb|ADW79182.1| NADH dehydrogenase subunit 6 [Cyanophora paradoxa]
          Length = 220

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 23/209 (11%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           LFF+LFS  AIISSF+ +T  + IYSVF LI  F NAAGL ++LGAEF+AM+ LVVY+GA
Sbjct: 12  LFFFLFSLGAIISSFIAITTNSSIYSVFYLILVFFNAAGLLIMLGAEFLAMLFLVVYLGA 71

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-------------- 111
           + + FLF+IMML+I I   + +   G    F   + +   I    N              
Sbjct: 72  IAILFLFVIMMLNIKINQFKNKIILGAQVFFITLLFSLIYINIPHNSFINLSEILTFNDS 131

Query: 112 ----FMVFSAEGELSRLVFKGNNVENIGK-----VLYTQYAYPLEISGFILLLSMIGAIV 162
                 + +   +L+ L +  N+   I       ++YTQYAY   +S  ILL+S+IGAIV
Sbjct: 132 EKLILFLNNYSIQLNNLFYNINSFNYITNSHQFFIVYTQYAYYFLLSALILLVSLIGAIV 191

Query: 163 LMLRHRRDIKRQDISKQLESNPDNSIVMV 191
           L L  + ++K+QD++KQ+  N   +I  V
Sbjct: 192 LTLHKKINVKKQDLNKQINRNFQTTIKTV 220


>gi|229032925|ref|ZP_04188880.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1271]
 gi|228728470|gb|EEL79491.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1271]
          Length = 162

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTQHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|228936578|ref|ZP_04099373.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823093|gb|EEM68930.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 162

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYLAVNNIDFANESAQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|109156505|ref|YP_654319.1| NADH dehydrogenase subunit 6 [Agaricia humilis]
 gi|108744068|gb|ABG02293.1| NADH dehydrogenase subunit 6 [Agaricia humilis]
          Length = 197

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 24/197 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F  + S  +V++  NPI+S+F L+  F  +A  FL LG  FVA++ L++YVGA+ + 
Sbjct: 1   MLAFGVVGSGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAIL 60

Query: 70  FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------ 112
           FLF+IM+L++           + ++         +G+FF   +A+  ++    +      
Sbjct: 61  FLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYAHRALF 120

Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              +  + +  +   + K  N+E +G+VLY    Y   ++  ILL++M+GAIVL      
Sbjct: 121 GAEIRSAWDLAIPWFLMKYQNMEALGRVLYIACYYLFILASLILLVAMVGAIVLTQEVGS 180

Query: 170 D----IKRQDISKQLES 182
           +    +KRQDI  Q   
Sbjct: 181 EAGPMVKRQDIFFQTSR 197


>gi|9695394|ref|NP_037616.1| NADH dehydrogenase subunit 6 [Phytophthora infestans]
 gi|6692646|gb|AAF24789.1|U17009_22 NADH dehydrogenase subunit 6 [Phytophthora infestans]
 gi|58012152|gb|AAW62560.1| NADH dehydrogenase subunit 6 [Phytophthora infestans]
          Length = 236

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 39/231 (16%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++FFY FS +A+ S+  V+   N IYS F LI  F N+ GL L+   EF++++ ++
Sbjct: 1   MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60

Query: 61  VYVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           +YVGA+ V FLF+IMMLD++  I+  +     G+L   F+      L        VF++ 
Sbjct: 61  IYVGAITVLFLFVIMMLDVNVLIDKNKINNNFGYLPIIFLISFIFFLETFVMFSKVFTSY 120

Query: 119 GELSRLVF-------------------------------------KGNNVENIGKVLYTQ 141
             L    F                                        N+E IG++LY+ 
Sbjct: 121 YHLINNSFFNQEVNTLFFFRDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILYSY 180

Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
           YA+    +G ILL+++IGA+ L  + ++   +Q+I KQL  N   +I  V 
Sbjct: 181 YAFFFLAAGIILLIALIGAVTLTKKEKKKNFKQNIYKQLSRNSLKAIFNVN 231


>gi|315587160|gb|ADU41541.1| NADH-ubiquinone oxidoreductase subunit J [Helicobacter pylori 35A]
          Length = 184

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 4   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 63

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +  
Sbjct: 64  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVAILLTLILSAPSIGENLSKQVN 123

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N+E IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 124 SNAIDAQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 165


>gi|167627162|ref|YP_001677662.1| NADH dehydrogenase I subunit J [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241667724|ref|ZP_04755302.1| NADH dehydrogenase I, J subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876268|ref|ZP_05248978.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|167597163|gb|ABZ87161.1| NADH dehydrogenase I, J subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842289|gb|EET20703.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 201

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 114/201 (56%), Gaps = 10/201 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+  + FY+F+ +AIIS+ ++V   NP+ SV ++IF FV  A ++++    ++A++ +V
Sbjct: 1   MVVTDILFYIFASLAIISALVLVLANNPVNSVIAMIFTFVFTAAVWIIFQQVYLALLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++ MLD+ +E      K+G +G FF    A  +    +  + ++A   
Sbjct: 61  VYVGAVLVMFLFVVFMLDLHVE------KQGRVGRFFYAFAAIIVCAIFATVISYAATKV 114

Query: 121 LSRLVFKG--NNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDI 176
            +    +G    ++ IG  ++     Y  E+  FILL +M  AI L LR  R+  K  + 
Sbjct: 115 FAGDSMQGGVGGLKIIGLTMFDNSNLYVFELVDFILLAAMTAAITLTLRSKRKGNKSVNP 174

Query: 177 SKQLESNPDNSIVMVKVKSGK 197
           ++Q++    + + MVK+ S +
Sbjct: 175 AQQVKVRAKDRLTMVKIPSNR 195


>gi|58201991|gb|AAW67046.1| NADH dehydrogenase subunit 6 [Phytophthora infestans]
 gi|58202038|gb|AAW67092.1| NADH dehydrogenase subunit 6 [Phytophthora infestans]
          Length = 236

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 39/231 (16%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++FFY FS +A+ S+  V+   N IYS F LI  F N+ GL L+   EF++++ ++
Sbjct: 1   MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60

Query: 61  VYVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           +YVGA+ V FLF+IMMLD++  I+  +     G+L   F+      L        VF++ 
Sbjct: 61  IYVGAITVLFLFVIMMLDVNVLIDKNKINNNFGYLPIIFLISFIFFLETFVMFSKVFTSY 120

Query: 119 GELSRLVF-------------------------------------KGNNVENIGKVLYTQ 141
             L    F                                        N+E IG++LY+ 
Sbjct: 121 YHLINNSFFNQEVNTLFFFRDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILYSY 180

Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192
           YA+    +G ILL+++IGA+ L  + ++   +Q+I KQL  N   +I  V 
Sbjct: 181 YAFFFLAAGIILLIALIGAVTLTKKEKKKNFKQNIYKQLSRNSLKAIFNVN 231


>gi|228917903|ref|ZP_04081439.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930300|ref|ZP_04093306.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228949014|ref|ZP_04111287.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229094403|ref|ZP_04225476.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-42]
 gi|229124797|ref|ZP_04253976.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           95/8201]
 gi|228658672|gb|EEL14333.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           95/8201]
 gi|228689004|gb|EEL42830.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-42]
 gi|228810770|gb|EEM57118.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228829359|gb|EEM74990.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841700|gb|EEM86811.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 162

 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESAQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|296103961|ref|YP_003614107.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058420|gb|ADF63158.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 184

 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +    
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDG 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              G   + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 122 TPIG--AKEVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|283786348|ref|YP_003366213.1| NADH-quinone oxidoreductase chain J [Citrobacter rodentium ICC168]
 gi|282949802|emb|CBG89425.1| NADH-quinone oxidoreductase chain J [Citrobacter rodentium ICC168]
          Length = 184

 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 82/166 (49%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +    
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAIMLVVIVYAILGVNDQGIDG 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           V    + + +G  L+  Y   +E++  +LL  ++ A  +    R  
Sbjct: 122 VPI--SAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERPG 165


>gi|259907935|ref|YP_002648291.1| NADH dehydrogenase subunit J [Erwinia pyrifoliae Ep1/96]
 gi|224963557|emb|CAX55047.1| NADH dehydrogenase I chain J [Erwinia pyrifoliae Ep1/96]
 gi|283477816|emb|CAY73732.1| NADH dehydrogenase I chain J [Erwinia pyrifoliae DSM 12163]
          Length = 184

 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +  K     G +    L + L++    + + S   +    
Sbjct: 62  AIMVLFVFVVMMLNLGGAEVQQEKDWLKPGMWIGPGLLSLLLLVTIVYAILSVNDQGIDG 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                  + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 122 TMIDG--KQVGISLFGPYVLAVELASMLLLAGLVVAFHIGREQR 163


>gi|150026253|ref|YP_001297079.1| NADH dehydrogenase I, J subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772794|emb|CAL44278.1| NADH dehydrogenase I, J subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 170

 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 93/170 (54%), Gaps = 3/170 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  + FY  S + + ++ L +  +NPI+S   L+  F + AG +LL  A+F+A++ ++
Sbjct: 1   MSILLIIFYFLSAITLATALLTIISKNPIHSAIYLVICFFSVAGHYLLFNAQFLAIVHII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEG 119
           VY GA++V FLF IM+++++ E    +     L +    G++   ++      M      
Sbjct: 61  VYSGAIMVLFLFTIMLMNLNEEGEPHKIMATKLAAVVSFGLVCFVMLAVFIKAMPKMETY 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             S   F+  +++ +GKVL  +Y  P E +  +LL++M+G ++L  + ++
Sbjct: 121 RASGQDFQ--SIKVLGKVLLNEYMVPFEFASILLLVAMMGVVLLSKKEKK 168


>gi|297616448|ref|YP_003701607.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144285|gb|ADI01042.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 166

 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 3/165 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  +++ FY+ + + +  +  VV   N + + F L+ +F+  A L+ LLGA+F+ ++ ++
Sbjct: 1   MTWEAVTFYILAVVTVTGAAGVVFSSNIVRAAFFLVASFLGVAALYFLLGADFLGLVQIM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GAV V  +F +M++  D      R       S + G   A L+  A    V+     
Sbjct: 61  IYAGAVSVLVIFAVMLVIKDD---IRRTSLFHPVSRWWGAAIAVLLTTALGKAVWQTSFP 117

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
              L  + + V  + K+L   Y    E++  +LL++++GAI+L  
Sbjct: 118 AKGLAVETDRVGQMAKLLLGDYVVAFEVAAVLLLVAIVGAIILAK 162


>gi|62161415|ref|YP_214918.1| NADH dehydrogenase subunit 6 [Anacropora matthai]
 gi|58220693|gb|AAW67957.1| NADH dehydrogenase subunit 6 [Anacropora matthai]
          Length = 197

 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 24/197 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F  + S  +V++  NPI+S+F LI  F+ +A  FL LG  FVA++ L++Y+GA+ + 
Sbjct: 1   MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYMGAIAIL 60

Query: 70  FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------ 112
           FLF+IM+L++           + ++         +G+FF   +A+  ++    +      
Sbjct: 61  FLFVIMLLNLTDFPPAFRLGGEADMTNYIPIGLVVGTFFFSEVASSWLIIGGPYTPRVFL 120

Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              +  + +  L   + K  N+E +G++LY    Y   ++ FILL++M+GAIVL      
Sbjct: 121 GAEIGRAWDLALPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLTQEIGS 180

Query: 170 D----IKRQDISKQLES 182
           +    +KRQDI  Q   
Sbjct: 181 EIGPVVKRQDIFFQTSR 197


>gi|89095639|ref|ZP_01168533.1| NADH dehydrogenase subunit J [Bacillus sp. NRRL B-14911]
 gi|89089385|gb|EAR68492.1| NADH dehydrogenase subunit J [Bacillus sp. NRRL B-14911]
          Length = 174

 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 90/172 (52%), Gaps = 4/172 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + L F   +  A+    L++ +   ++ V +L+F F++ AG+++LL AEF+A++ +++
Sbjct: 4   TGELLAFLGLAIAAVTGGILLINLEKVVHMVVALVFTFISIAGIYILLSAEFIAVVQVLI 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+ +  LF IM+     E  +   +   +  F   +  A  +       +++ +   
Sbjct: 64  YSGAITIIMLFGIMLTRHHDESGQKAGRLRRILLFLAILAFAFSVYIG----IYNLDFPE 119

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             ++   NN E IG  L++++  P E++  +LL++++GAIVL  +   + + 
Sbjct: 120 QEVLLHENNTEQIGISLFSEFVIPFELTSVVLLVALVGAIVLSRKDDEETEE 171


>gi|317011469|gb|ADU85216.1| NADH dehydrogenase subunit J [Helicobacter pylori SouthAfrica7]
          Length = 182

 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQNPKILCILSFGVALLLTLILSAPSISENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 PNAIDAQIPNIKAIGYVLFTDYLIPFEAAALMLLVAMVGGIA 163


>gi|227488699|ref|ZP_03919015.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091360|gb|EEI26672.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 282

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ + + I  +  +V  +  I+S   L+   V  A  +  +GA FV ++ +VVY GAV+V
Sbjct: 27  WILAAVIIAGAIGMVMCKELIHSALCLLLVMVGVAIEYATMGAPFVFVVQIVVYAGAVMV 86

Query: 69  FFLFIIMMLDIDIEVAEPRK----KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
             LFI+MM+    E A+  K        + +    I    LI  A N    +A   +S  
Sbjct: 87  MILFIVMMVGARGEAADGEKTATGTSHTVLTGVAAIALLALIGIAVNMSTLTAPRGMSEA 146

Query: 125 -VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               G NV  +G  ++ +Y    E+   +L+++ +GA++++ R R
Sbjct: 147 NAEHGGNVAGLGVEIFNKYVVGFEVLSALLIVAAVGAMIMIFRVR 191


>gi|295400700|ref|ZP_06810677.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112606|ref|YP_003990922.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. Y4.1MC1]
 gi|294977281|gb|EFG52882.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217707|gb|ADP76311.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus
           sp. Y4.1MC1]
          Length = 173

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 1/173 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + L F   +  AII   L++ +   ++ V +L+F F++ AGL++LL AEFVA + ++
Sbjct: 1   MSGEYLAFLTLALAAIIGGVLMLNLSKVVHMVTALVFTFISIAGLYVLLSAEFVAAVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  LF IM+     E  E     GF       I A      A    V+  +  
Sbjct: 61  IYSGAITIIMLFGIMLTRHREEDKENTTTGGFWRKTATAI-AVFAFGAAVYLGVYQLDFG 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                    N E IG  LY+ Y  P EI+  ILL++++GAI+L  +  R+ ++
Sbjct: 120 EKAERLHEKNTEQIGVALYSHYIIPFEITAVILLVALVGAIILAKKDDREAQK 172


>gi|41203479|ref|NP_957739.1| NADH dehydrogenase subunit 6 [Emiliania huxleyi]
 gi|33114165|gb|AAP94721.1| NADH dehydrogenase subunit 6 [Emiliania huxleyi]
          Length = 207

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 17/207 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +L FY      I S+ +V+  RNP+YSV  L+  FVN + L   L  E++ ++ +VVY
Sbjct: 1   MSTLIFYFIGTFCIFSALMVIFSRNPVYSVLFLVLTFVNVSSLLFFLELEYLPLVFIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V F+F++MML+I I   +   ++     F +  +    I  A+     S +   S
Sbjct: 61  VGALAVLFIFVMMMLNIRISDLKENNEQLLPVIFILTAIFFFHIFFATKSDFASLKNFFS 120

Query: 123 RLVFKG-----------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
               +                  +N+ N+G +LY+++ Y   ++GF+LLL+M+G I+L L
Sbjct: 121 TFNNEYSLITADLMLTTNWFSFDSNMRNLGFLLYSEFFYLFILAGFVLLLAMLGTIILTL 180

Query: 166 RHRRDIKRQDISKQLESNPDNSIVMVK 192
           R     + Q  S Q+  N + +I   K
Sbjct: 181 RRFFKGRIQHPSFQIMRNFETAIKSTK 207


>gi|332674072|gb|AEE70889.1| NADH-ubiquinone oxidoreductase [Helicobacter pylori 83]
          Length = 184

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 4   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 63

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +  
Sbjct: 64  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVAILLTLILSAPSIGENLSNQVN 123

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 124 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 165


>gi|54114097|gb|AAV29682.1| NT02FT1745 [synthetic construct]
          Length = 201

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 115/200 (57%), Gaps = 10/200 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+  + FY F+ +AII + ++V   NP+ SV ++IF F+  A ++++L   ++A++ +V
Sbjct: 1   MVVTVILFYTFASLAIIFALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++ MLD+ +E      ++G +G FF  + A  +    +  + ++A   
Sbjct: 61  VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYALAAVVVCAIFATVISYAATNV 114

Query: 121 LSRLVFKG--NNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDI 176
            +  + +G    ++ IG  +++    Y  E+  FILL +M  AI L LR  R+  K  D 
Sbjct: 115 FAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTVDP 174

Query: 177 SKQLESNPDNSIVMVKVKSG 196
           ++Q++    + + MVK+ S 
Sbjct: 175 AQQVKVRAKDRLTMVKMPSN 194


>gi|108563638|ref|YP_627954.1| NADH dehydrogenase subunit J [Helicobacter pylori HPAG1]
 gi|107837411|gb|ABF85280.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori HPAG1]
          Length = 182

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVAILLTLILSAPSIGENLSNQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|237732311|ref|ZP_04562792.1| NADH:ubiquinone oxidoreductase [Citrobacter sp. 30_2]
 gi|283832290|ref|ZP_06352031.1| NADH-quinone oxidoreductase, J subunit [Citrobacter youngae ATCC
           29220]
 gi|226907850|gb|EEH93768.1| NADH:ubiquinone oxidoreductase [Citrobacter sp. 30_2]
 gi|291071935|gb|EFE10044.1| NADH-quinone oxidoreductase, J subunit [Citrobacter youngae ATCC
           29220]
          Length = 184

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 82/166 (49%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E++  +LL  ++ A  +    R  
Sbjct: 120 DGTPISAKAVGISLFGPYVLAVELASMLLLAGLVVAFHVGREERSG 165


>gi|115531585|ref|YP_783947.1| NADH dehydrogenase subunit 6 [Aurelia aurita]
 gi|110226012|gb|ABG56244.1| NADH dehydrogenase subunit 6 [Aurelia aurita]
          Length = 190

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 1/177 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F  + IIS  +VVT  +P++S+  L+ +F+ AA +F+ L A+F+A+ TL++YVGA+ + 
Sbjct: 5   IFMILTIISGIMVVTAIHPVHSIIWLVLSFIGAAIVFIQLQADFIALATLIIYVGAIAIL 64

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
           F+F++MML++     +       +      IL    ++    +   +       L+ +  
Sbjct: 65  FIFVLMMLNLSSFEFDGNISS-IIPLGITSILGLITLIIGLEYSNINDPEVEEILIKELL 123

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186
           +++ IG  LY  YA  L ++  ILL++MIGAI+L L+     KRQD   Q+  +  N
Sbjct: 124 DIQTIGFQLYNSYAPHLIVASLILLVAMIGAIILTLQPHLAAKRQDNFIQITRDFHN 180


>gi|109946836|ref|YP_664064.1| NADH dehydrogenase subunit J [Helicobacter acinonychis str. Sheeba]
 gi|109714057|emb|CAJ99065.1| NADH dehydrogenase I chain J [Helicobacter acinonychis str. Sheeba]
          Length = 182

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVAVLLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  + +N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 PNAIDVQISNIKAIGYVLFTDYLIPFEAAALMLLVAMVGGIA 163


>gi|320095558|ref|ZP_08027221.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977466|gb|EFW09146.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 318

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 85/167 (50%), Gaps = 3/167 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F   +   +  +  V+  +   +S   ++   +  A L++   A F+ +  +VVY 
Sbjct: 16  EAVLFACTAVFMVACALGVLFFKKAAHSAVCMVGVMLGLAVLYIANNAPFLGVAQIVVYT 75

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++ FLF+IM++ I        + RG + +  +G L   + V A+  +  +A+   + 
Sbjct: 76  GAIMMLFLFVIMLIGIGESDDYALQGRGRIIAAVLGGLGLAVCVTAA-VVHSTADARTAA 134

Query: 124 LVFKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            V   +N  + ++  +L+ ++   +E++G +L+ + +GA+VL    R
Sbjct: 135 PVDPYSNAPITDLAVMLFERHWLSMELAGGLLITAALGAMVLTHSDR 181


>gi|310768157|gb|ADP13107.1| NADH dehydrogenase subunit J [Erwinia sp. Ejp617]
          Length = 184

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +  K     G +    L + L++    + + S   +    
Sbjct: 62  AIMVLFVFVVMMLNLGGAEVQQEKDWLKPGMWIGPGLLSLLLLVTIVYAILSVNDQGIDG 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                  + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 122 TMIDG--KQVGISLFGPYVLAVELASMLLLAGLVVAFHIGREQR 163


>gi|229187519|ref|ZP_04314660.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BGSC
           6E1]
 gi|228595958|gb|EEK53637.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BGSC
           6E1]
          Length = 162

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   + E       R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESAQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157


>gi|320353967|ref|YP_004195306.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
 gi|320122469|gb|ADW18015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
          Length = 187

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 1/164 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
             FF   + M I S  L +++RN ++SV  ++  F + AGL+L L AEF+A + ++VY G
Sbjct: 4   QFFFGYCALMIIASGILAISLRNLVHSVLMVLVLFFHMAGLYLTLNAEFLAAVQIIVYAG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           A++V +LF++ ++ +  E+       G +LG      LA  L+     F +         
Sbjct: 64  AILVLYLFVLFLVSLREELHLDAFVPGAWLGRIIAVGLAVGLLYVIPAFTLGEKGTWSVS 123

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            + +  + + +G+ LY+ Y  P EI+G ILL+++IG +VL  R 
Sbjct: 124 AIRELTHTKALGQELYSAYLLPFEIAGLILLVALIGGLVLARRE 167


>gi|300717643|ref|YP_003742446.1| NADH dehydrogenase I chain J [Erwinia billingiae Eb661]
 gi|299063479|emb|CAX60599.1| NADH dehydrogenase I chain J [Erwinia billingiae Eb661]
          Length = 184

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY G
Sbjct: 2   EFAFYLCGLVAVLTTLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V    ++      +    + + +++    + + S   +   +
Sbjct: 62  AIMVLFVFVVMMLNLGESVQAQEREWLKPTVWIGPGVLSLVLLGVMIYAIRSVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E++  +LL  ++ A  +    R+ 
Sbjct: 120 DGTMIDAKAVGISLFGPYVLAVELASMLLLAGLVVAYHIGREQRQG 165


>gi|329296026|ref|ZP_08253362.1| NADH:ubiquinone oxidoreductase subunit J [Plautia stali symbiont]
          Length = 183

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 86/166 (51%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + ++ AG+F  +GA F   + ++VY G
Sbjct: 2   EFAFYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +  ++      +    + + L++    + + +A  +   +
Sbjct: 62  AIMVLFVFVVMMLNLGKTQQDQEREWLKPSLWIGPGIVSLLLLVVMIYAIMTATDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E++  +LL  ++ A  +    R+ 
Sbjct: 120 DGTVIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDRQG 165


>gi|227542302|ref|ZP_03972351.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181902|gb|EEI62874.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 283

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ + + I  +  +V  +  I+S   L+   V  A  +  +GA FV ++ +VVY GAV+V
Sbjct: 28  WILAAVIIAGAIGMVMCKELIHSALCLLLVMVGVAIEYATMGAPFVFVVQIVVYAGAVMV 87

Query: 69  FFLFIIMMLDIDIEVAEPRK----KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
             LFI+MM+    E A+  K        + +    I    LI  A N    +A   +S  
Sbjct: 88  MILFIVMMVGARGEAADGEKTATGTSHTVLTGVAAIALLALIGIAVNMSTLTAPRGMSEA 147

Query: 125 -VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               G NV  +G  ++ +Y    E+   +L+++ +GA++++ R R
Sbjct: 148 NAEHGGNVAGLGVEIFNKYVVGFEVLSALLIVAAVGAMIMIFRVR 192


>gi|152990047|ref|YP_001355769.1| NADH dehydrogenase subunit J [Nitratiruptor sp. SB155-2]
 gi|151421908|dbj|BAF69412.1| NADH-quinone oxidoreductase, chain J [Nitratiruptor sp. SB155-2]
          Length = 184

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 95/184 (51%), Gaps = 1/184 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++++ FYLF+ + I    + V  +N +YS+ +L    V  +  F LL A+F+ ++ ++VY
Sbjct: 2   VEAIAFYLFAALTIFMFAVTVMSKNALYSMSALAAGMVFISAFFFLLDADFLGVVQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+  + F +M +D   +V E    +  +  F  G++A  L++     +V      L 
Sbjct: 62  GGAVMALYAFAMMFMDTTKDVKEKNPSKKIV-FFLSGMVALLLVIILLTPIVSDKVQALY 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +  +  N E +G VL+T+Y  P E++  +LL++MI  I+L  +   +     I +++E 
Sbjct: 121 PVSDEVGNAEAVGIVLFTKYLVPFELAAVMLLVAMIAGIILASKRMDESITLKIDQEIEE 180

Query: 183 NPDN 186
               
Sbjct: 181 KAGK 184


>gi|308062553|gb|ADO04441.1| NADH dehydrogenase subunit J [Helicobacter pylori Cuz20]
          Length = 182

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSIGENLSEQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N+E IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|11466755|ref|NP_039351.1| NADH dehydrogenase subunit 6 [Marchantia polymorpha]
 gi|128802|sp|P06266|NU6C_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|11726|emb|CAA28137.1| unnamed protein product [Marchantia polymorpha]
          Length = 191

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F       I+ S  V+ + N +YS   L F FV  + L+LLL A+FVA   +++YVGAV
Sbjct: 11  IFLFLESGLILGSLGVILLTNIVYSALFLGFVFVCISLLYLLLNADFVAAAQILIYVGAV 70

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL----- 121
            V  +F +M+++              +G      L   + +  +NF+  ++  ++     
Sbjct: 71  NVLIIFAVMLINKKQ--YSNFFVYWTIGDGITLTLCTSIFLLLNNFISNTSWSKIFLMTK 128

Query: 122 ----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                + +   N V +IG  L T++  P E+   ILL+++IGAI L  R ++
Sbjct: 129 PNLVVKDIILINTVRHIGSELLTEFLLPFELMSIILLVALIGAITLARREKK 180


>gi|200004048|ref|YP_002221382.1| NADH dehydrogenase subunit 6 [Blastocystis sp. NandII]
 gi|156617373|gb|ABU87591.1| NADH dehydrogenase subunit 6 [Blastocystis sp. NandII]
          Length = 194

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 107/190 (56%), Gaps = 5/190 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF+LF+ + IIS F+ ++V N IY+V  LI AF ++  +  LL  +++A++ +++YVGA+
Sbjct: 4   FFFLFASIIIISVFMTISVNNAIYAVLFLILAFFSSMCILFLLNVDYLALMFILIYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----SAEGELS 122
            + FLF++MML I I      K   F+      ++   +++    F VF           
Sbjct: 64  TILFLFVVMMLKIKINEKNTTKFISFINIIICCLIIYNVLLNTDIFNVFLNTDLTYTNWF 123

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDISKQLE 181
             ++  +N++ +G+V++  Y +   +SGF+LL+ MI AI+L     + ++R Q + +QL 
Sbjct: 124 SNLYYIDNIKMLGQVIFNNYYFYFILSGFVLLIGMISAILLSKESNKVVRRYQLVYQQLS 183

Query: 182 SNPDNSIVMV 191
               N++ +V
Sbjct: 184 REVSNAVFLV 193


>gi|332662322|ref|YP_004445110.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331136|gb|AEE48237.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 165

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 5/167 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+ S +AII +   V  RN +YSV SL+  F   AG++L L AEFVA++ ++VY
Sbjct: 1   MDQVIFYILSTIAIIGALSTVVSRNAMYSVLSLVVTFFALAGIYLQLNAEFVAIVHIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GA++V FLF++MML+++      RK     +L      I+AA L   + N  +  A G 
Sbjct: 61  AGAIMVLFLFVVMMLNLNTVTVTIRKNPLIKYLAVLVGIIMAALLGFASMNTALPIARGN 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            S  V     V+ +GK+L+ +Y  P E+   +L+ +M+G IVL  + 
Sbjct: 121 TSAEV---GTVKVLGKMLFNEYLLPFELISVLLIATMVGVIVLTKKE 164


>gi|133900530|gb|ABO41431.1| NADH dehydrogenase subunit 6 [Podostemum ceratophyllum]
          Length = 179

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFFILVFCDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----------MVFSAEGELSRLVFK 127
           I I        R    S  IG++    +     F             +      +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILEFESIPLLPTQKQTAYLKYTVYAGKVRP 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y + L +S  ILL++MIGAIVL +     +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFFWLLLSSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDF 177


>gi|268678789|ref|YP_003303220.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616820|gb|ACZ11185.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 184

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 93/165 (56%), Gaps = 3/165 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FY+FS + +    +VV  +N +Y++ +L    +  +G F +L AEF+ ++ +VVY 
Sbjct: 3   ETVAFYIFSILTLGMFGIVVMSKNALYAMSALAGGMIFISGFFFILDAEFLGVVQIVVYS 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122
           GA++  + F +M  D   +V+E  + +    ++ + I++A LIV      + S   E S 
Sbjct: 63  GAIMALYAFGMMFFDTTRDVSEKMRSKKI--AYTLSIVSAVLIVAILCMPLVSESIEASY 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +    N++ +G +L+T+Y  P E++  +LL++MI  IVL  + 
Sbjct: 121 PAIENVGNIQMVGLILFTKYLVPFELAAIMLLVAMISGIVLASKK 165


>gi|298245620|ref|ZP_06969426.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter
           racemifer DSM 44963]
 gi|297553101|gb|EFH86966.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter
           racemifer DSM 44963]
          Length = 175

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 99/174 (56%), Gaps = 8/174 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +L F++ + + ++++ LVV++RN ++S  +L F FV A G+++LL AEF+A++ ++
Sbjct: 1   MDFAALMFWILATILVVAALLVVSLRNIVHSAIALFFVFVMAGGIYILLNAEFIAIVQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF---S 116
           +Y GAV +  LF +M+  I  ++   P  +  ++ +     +   ++    N  +    +
Sbjct: 61  IYAGAVTILILFALMLTRIGGLQRTNPANRLWWIAAIISAFVGGSILYGLFNSTLAISNT 120

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLR 166
           + G   +L    NNV  IG++LY+     Y  P EI+  +LL++++GAIV+   
Sbjct: 121 STGGGHQLPAHINNVVAIGQLLYSPTSYSYILPFEIASVVLLVAIVGAIVIGRE 174


>gi|308064047|gb|ADO05934.1| NADH dehydrogenase subunit J [Helicobacter pylori Sat464]
          Length = 182

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSIGENLSNQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|295098081|emb|CBK87171.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 184

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLAVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|261340668|ref|ZP_05968526.1| NADH dehydrogenase I, J subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288317082|gb|EFC56020.1| NADH dehydrogenase I, J subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 184

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGIALFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|217033590|ref|ZP_03439018.1| hypothetical protein HP9810_899g26 [Helicobacter pylori 98-10]
 gi|216943936|gb|EEC23370.1| hypothetical protein HP9810_899g26 [Helicobacter pylori 98-10]
 gi|261838592|gb|ACX98358.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 51]
 gi|317178437|dbj|BAJ56225.1| NADH dehydrogenase subunit J [Helicobacter pylori F30]
          Length = 182

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVAILLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|170767399|ref|ZP_02901852.1| NADH-quinone oxidoreductase, J subunit [Escherichia albertii
           TW07627]
 gi|170123733|gb|EDS92664.1| NADH-quinone oxidoreductase, J subunit [Escherichia albertii
           TW07627]
          Length = 184

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 92/190 (48%), Gaps = 10/190 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
                + + +G  L+  Y   +E++  +LL  ++ A          + R++ + ++ SN 
Sbjct: 120 DGTPVSAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREEHAGEVLSNR 171

Query: 185 DNSIVMVKVK 194
            +     K +
Sbjct: 172 KDDSAKRKTE 181


>gi|11467872|ref|NP_050923.1| NADH dehydrogenase subunit 6 [Nephroselmis olivacea]
 gi|14194995|sp|Q9TKV3|NU6C_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|5880801|gb|AAD54894.1|AF137379_117 subunit 6 of NADH-plastoquinoneoxidoreductase [Nephroselmis
           olivacea]
          Length = 169

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 5/157 (3%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
            +   ++    V+ + + +Y+ F L   F   AG+++LL A+FVA   ++VYVGA+ V  
Sbjct: 12  LTTGILLGCLGVIFLPSIVYAAFLLGAVFFCLAGIYVLLHADFVAAAQVLVYVGAINVLI 71

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           LF IM+++              +       L   L+      M+ +          + N+
Sbjct: 72  LFAIMLVNPQDAPPRALDSPPLIPGIACIGLLGVLV-----QMISTTSWLTPPWTPEPNS 126

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +  +G  L++      E+   +LL++++GAIVL  R 
Sbjct: 127 LPVLGGHLFSDCLLAFEVMSLVLLVALVGAIVLARRE 163


>gi|15802827|ref|NP_288854.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 EDL933]
 gi|15832418|ref|NP_311191.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str. Sakai]
 gi|16130215|ref|NP_416783.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K-12 substr. MG1655]
 gi|24113652|ref|NP_708162.1| NADH dehydrogenase subunit J [Shigella flexneri 2a str. 301]
 gi|26248667|ref|NP_754707.1| NADH dehydrogenase subunit J [Escherichia coli CFT073]
 gi|30063706|ref|NP_837877.1| NADH dehydrogenase subunit J [Shigella flexneri 2a str. 2457T]
 gi|74312798|ref|YP_311217.1| NADH dehydrogenase subunit J [Shigella sonnei Ss046]
 gi|82544758|ref|YP_408705.1| NADH dehydrogenase subunit J [Shigella boydii Sb227]
 gi|82777688|ref|YP_404037.1| NADH dehydrogenase subunit J [Shigella dysenteriae Sd197]
 gi|89109098|ref|AP_002878.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K-12 substr. W3110]
 gi|91211572|ref|YP_541558.1| NADH dehydrogenase subunit J [Escherichia coli UTI89]
 gi|110642484|ref|YP_670214.1| NADH dehydrogenase subunit J [Escherichia coli 536]
 gi|110806243|ref|YP_689763.1| NADH dehydrogenase subunit J [Shigella flexneri 5 str. 8401]
 gi|117624469|ref|YP_853382.1| NADH dehydrogenase subunit J [Escherichia coli APEC O1]
 gi|157157709|ref|YP_001463623.1| NADH dehydrogenase subunit J [Escherichia coli E24377A]
 gi|157161768|ref|YP_001459086.1| NADH dehydrogenase subunit J [Escherichia coli HS]
 gi|168748129|ref|ZP_02773151.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755032|ref|ZP_02780039.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761281|ref|ZP_02786288.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767906|ref|ZP_02792913.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772994|ref|ZP_02798001.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780135|ref|ZP_02805142.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787187|ref|ZP_02812194.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798450|ref|ZP_02823457.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170019411|ref|YP_001724365.1| NADH dehydrogenase subunit J [Escherichia coli ATCC 8739]
 gi|170081897|ref|YP_001731217.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170681867|ref|YP_001744478.1| NADH dehydrogenase subunit J [Escherichia coli SMS-3-5]
 gi|187731180|ref|YP_001881101.1| NADH dehydrogenase subunit J [Shigella boydii CDC 3083-94]
 gi|188491681|ref|ZP_02998951.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 53638]
 gi|191166504|ref|ZP_03028334.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B7A]
 gi|191170098|ref|ZP_03031652.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli F11]
 gi|193062313|ref|ZP_03043408.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E22]
 gi|193068217|ref|ZP_03049181.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E110019]
 gi|194427097|ref|ZP_03059648.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B171]
 gi|194433331|ref|ZP_03065611.1| NADH-quinone oxidoreductase, J subunit [Shigella dysenteriae 1012]
 gi|194436249|ref|ZP_03068351.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 101-1]
 gi|195935657|ref|ZP_03081039.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str. EC4024]
 gi|208807034|ref|ZP_03249371.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208812963|ref|ZP_03254292.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208818254|ref|ZP_03258574.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209397133|ref|YP_002271689.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209919728|ref|YP_002293812.1| NADH dehydrogenase subunit J [Escherichia coli SE11]
 gi|215487493|ref|YP_002329924.1| NADH dehydrogenase subunit J [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327964|ref|ZP_03444047.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218548271|ref|YP_002382062.1| NADH dehydrogenase subunit J [Escherichia fergusonii ATCC 35469]
 gi|218554836|ref|YP_002387749.1| NADH dehydrogenase subunit J [Escherichia coli IAI1]
 gi|218559193|ref|YP_002392106.1| NADH dehydrogenase subunit J [Escherichia coli S88]
 gi|218690440|ref|YP_002398652.1| NADH dehydrogenase subunit J [Escherichia coli ED1a]
 gi|218695879|ref|YP_002403546.1| NADH dehydrogenase subunit J [Escherichia coli 55989]
 gi|218700754|ref|YP_002408383.1| NADH dehydrogenase subunit J [Escherichia coli IAI39]
 gi|218705810|ref|YP_002413329.1| NADH dehydrogenase subunit J [Escherichia coli UMN026]
 gi|227887336|ref|ZP_04005141.1| NADH dehydrogenase subunit J [Escherichia coli 83972]
 gi|237704754|ref|ZP_04535235.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|238901455|ref|YP_002927251.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli BW2952]
 gi|253772798|ref|YP_003035629.1| NADH dehydrogenase subunit J [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162289|ref|YP_003045397.1| NADH dehydrogenase subunit J [Escherichia coli B str. REL606]
 gi|254794172|ref|YP_003079009.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017564|ref|ZP_05431429.1| NADH dehydrogenase subunit J [Shigella sp. D9]
 gi|256022036|ref|ZP_05435901.1| NADH dehydrogenase subunit J [Escherichia sp. 4_1_40B]
 gi|260844867|ref|YP_003222645.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O103:H2 str. 12009]
 gi|260856324|ref|YP_003230215.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O26:H11 str. 11368]
 gi|260869003|ref|YP_003235405.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O111:H- str. 11128]
 gi|261223266|ref|ZP_05937547.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261259184|ref|ZP_05951717.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O157:H7 str. FRIK966]
 gi|293405746|ref|ZP_06649738.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1412]
 gi|293410640|ref|ZP_06654216.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B354]
 gi|293446617|ref|ZP_06663039.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B088]
 gi|297518347|ref|ZP_06936733.1| NADH dehydrogenase subunit J [Escherichia coli OP50]
 gi|298381429|ref|ZP_06991028.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1302]
 gi|300818120|ref|ZP_07098332.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 107-1]
 gi|300822151|ref|ZP_07102293.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 119-7]
 gi|300896954|ref|ZP_07115435.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 198-1]
 gi|300903665|ref|ZP_07121581.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 84-1]
 gi|300918555|ref|ZP_07135145.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 115-1]
 gi|300924539|ref|ZP_07140503.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 182-1]
 gi|300936844|ref|ZP_07151733.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 21-1]
 gi|300948576|ref|ZP_07162669.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 116-1]
 gi|300956460|ref|ZP_07168749.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 175-1]
 gi|300981078|ref|ZP_07175350.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 200-1]
 gi|300983375|ref|ZP_07176559.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 45-1]
 gi|301024078|ref|ZP_07187792.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 69-1]
 gi|301026950|ref|ZP_07190343.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 196-1]
 gi|301049033|ref|ZP_07196018.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 185-1]
 gi|301303261|ref|ZP_07209386.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 124-1]
 gi|301328772|ref|ZP_07221820.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 78-1]
 gi|301647623|ref|ZP_07247419.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 146-1]
 gi|306814609|ref|ZP_07448771.1| NADH dehydrogenase subunit J [Escherichia coli NC101]
 gi|307138944|ref|ZP_07498300.1| NADH dehydrogenase subunit J [Escherichia coli H736]
 gi|307311160|ref|ZP_07590804.1| NADH dehydrogenase (quinone) [Escherichia coli W]
 gi|309785016|ref|ZP_07679649.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella dysenteriae 1617]
 gi|309793159|ref|ZP_07687587.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 145-7]
 gi|312967578|ref|ZP_07781793.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 2362-75]
 gi|312973461|ref|ZP_07787633.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 1827-70]
 gi|331642918|ref|ZP_08344053.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H736]
 gi|331647935|ref|ZP_08349027.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli M605]
 gi|331653722|ref|ZP_08354723.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli M718]
 gi|331658360|ref|ZP_08359322.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA206]
 gi|331663794|ref|ZP_08364704.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA143]
 gi|331668978|ref|ZP_08369826.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA271]
 gi|331673785|ref|ZP_08374548.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA280]
 gi|331678226|ref|ZP_08378901.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H591]
 gi|331683952|ref|ZP_08384548.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H299]
 gi|332278574|ref|ZP_08390987.1| NADH:ubiquinone oxidoreductase membrane subunit J [Shigella sp. D9]
 gi|84028757|sp|P0AFE2|NUOJ_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J; AltName: Full=NUO10
 gi|84028758|sp|P0AFE1|NUOJ_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J; AltName: Full=NUO10
 gi|84028759|sp|P0AFE0|NUOJ_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J; AltName: Full=NUO10
 gi|84028760|sp|P0AFE3|NUOJ_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|12516630|gb|AAG57409.1|AE005460_3 NADH dehydrogenase I chain J [Escherichia coli O157:H7 str. EDL933]
 gi|26109072|gb|AAN81275.1|AE016763_234 NADH dehydrogenase I chain J [Escherichia coli CFT073]
 gi|1788616|gb|AAC75340.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1799640|dbj|BAA16108.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K12 substr. W3110]
 gi|13362634|dbj|BAB36587.1| NADH dehydrogenase I chain J [Escherichia coli O157:H7 str. Sakai]
 gi|24052716|gb|AAN43869.1| NADH dehydrogenase I chain J [Shigella flexneri 2a str. 301]
 gi|30041961|gb|AAP17687.1| NADH dehydrogenase I chain J [Shigella flexneri 2a str. 2457T]
 gi|73856275|gb|AAZ88982.1| NADH dehydrogenase I chain J [Shigella sonnei Ss046]
 gi|81241836|gb|ABB62546.1| NADH dehydrogenase I chain J [Shigella dysenteriae Sd197]
 gi|81246169|gb|ABB66877.1| NADH dehydrogenase I chain J [Shigella boydii Sb227]
 gi|91073146|gb|ABE08027.1| NADH dehydrogenase I chain J [Escherichia coli UTI89]
 gi|110344076|gb|ABG70313.1| NADH dehydrogenase I chain J [Escherichia coli 536]
 gi|110615791|gb|ABF04458.1| NADH dehydrogenase I chain J [Shigella flexneri 5 str. 8401]
 gi|115513593|gb|ABJ01668.1| NADH dehydrogenase I chain J [Escherichia coli APEC O1]
 gi|157067448|gb|ABV06703.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli HS]
 gi|157079739|gb|ABV19447.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E24377A]
 gi|169754339|gb|ACA77038.1| NADH dehydrogenase (quinone) [Escherichia coli ATCC 8739]
 gi|169889732|gb|ACB03439.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170519585|gb|ACB17763.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli SMS-3-5]
 gi|187428172|gb|ACD07446.1| NADH-quinone oxidoreductase, J subunit [Shigella boydii CDC
           3083-94]
 gi|187771333|gb|EDU35177.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017289|gb|EDU55411.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188486880|gb|EDU61983.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 53638]
 gi|189002049|gb|EDU71035.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357621|gb|EDU76040.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189363001|gb|EDU81420.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368227|gb|EDU86643.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372886|gb|EDU91302.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189378912|gb|EDU97328.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190903464|gb|EDV63183.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B7A]
 gi|190909614|gb|EDV69199.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli F11]
 gi|192931979|gb|EDV84578.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E22]
 gi|192958496|gb|EDV88935.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E110019]
 gi|194414718|gb|EDX30989.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B171]
 gi|194418425|gb|EDX34514.1| NADH-quinone oxidoreductase, J subunit [Shigella dysenteriae 1012]
 gi|194424977|gb|EDX40962.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 101-1]
 gi|208726835|gb|EDZ76436.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208734240|gb|EDZ82927.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208738377|gb|EDZ86059.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209158533|gb|ACI35966.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765148|gb|ACI80886.1| NADH dehydrogenase I chain J [Escherichia coli]
 gi|209765150|gb|ACI80887.1| NADH dehydrogenase I chain J [Escherichia coli]
 gi|209765152|gb|ACI80888.1| NADH dehydrogenase I chain J [Escherichia coli]
 gi|209765156|gb|ACI80890.1| NADH dehydrogenase I chain J [Escherichia coli]
 gi|209912987|dbj|BAG78061.1| NADH dehydrogenase I chain J [Escherichia coli SE11]
 gi|215265565|emb|CAS09968.1| NADH: ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217320331|gb|EEC28756.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218352611|emb|CAU98392.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli 55989]
 gi|218355812|emb|CAQ88425.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           fergusonii ATCC 35469]
 gi|218361604|emb|CAQ99196.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli IAI1]
 gi|218365962|emb|CAR03706.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli S88]
 gi|218370740|emb|CAR18553.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli IAI39]
 gi|218428004|emb|CAR08775.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli ED1a]
 gi|218432907|emb|CAR13801.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli UMN026]
 gi|222034036|emb|CAP76777.1| NadH-quinone oxidoreductase subunit J [Escherichia coli LF82]
 gi|226901120|gb|EEH87379.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|227835686|gb|EEJ46152.1| NADH dehydrogenase subunit J [Escherichia coli 83972]
 gi|238861875|gb|ACR63873.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli BW2952]
 gi|242377913|emb|CAQ32682.1| NADH:ubiquinone oxidoreductase, membrane subunit J, subunit of
           NADH:ubiquinone oxidoreductase I [Escherichia coli
           BL21(DE3)]
 gi|253323842|gb|ACT28444.1| NADH dehydrogenase (quinone) [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974190|gb|ACT39861.1| NADH dehydrogenase subunit J [Escherichia coli B str. REL606]
 gi|253978357|gb|ACT44027.1| NADH dehydrogenase subunit J [Escherichia coli BL21(DE3)]
 gi|254593572|gb|ACT72933.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O157:H7 str. TW14359]
 gi|257754973|dbj|BAI26475.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O26:H11 str. 11368]
 gi|257760014|dbj|BAI31511.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O103:H2 str. 12009]
 gi|257765359|dbj|BAI36854.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli O111:H- str. 11128]
 gi|260448627|gb|ACX39049.1| NADH dehydrogenase (quinone) [Escherichia coli DH1]
 gi|281179367|dbj|BAI55697.1| NADH dehydrogenase I chain J [Escherichia coli SE15]
 gi|281601721|gb|ADA74705.1| NADH-quinone oxidoreductase subunit J [Shigella flexneri 2002017]
 gi|284922268|emb|CBG35353.1| NADH-quinone oxidoreductase chain J [Escherichia coli 042]
 gi|291323447|gb|EFE62875.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B088]
 gi|291427954|gb|EFF00981.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1412]
 gi|291471108|gb|EFF13592.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B354]
 gi|294489634|gb|ADE88390.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli IHE3034]
 gi|298278871|gb|EFI20385.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1302]
 gi|299879497|gb|EFI87708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 196-1]
 gi|300299142|gb|EFJ55527.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 185-1]
 gi|300307691|gb|EFJ62211.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 200-1]
 gi|300316730|gb|EFJ66514.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 175-1]
 gi|300359222|gb|EFJ75092.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 198-1]
 gi|300396734|gb|EFJ80272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 69-1]
 gi|300404321|gb|EFJ87859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 84-1]
 gi|300408541|gb|EFJ92079.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 45-1]
 gi|300414290|gb|EFJ97600.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 115-1]
 gi|300419257|gb|EFK02568.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 182-1]
 gi|300451924|gb|EFK15544.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 116-1]
 gi|300458031|gb|EFK21524.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 21-1]
 gi|300525281|gb|EFK46350.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 119-7]
 gi|300529264|gb|EFK50326.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 107-1]
 gi|300841435|gb|EFK69195.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 124-1]
 gi|300844834|gb|EFK72594.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 78-1]
 gi|301074250|gb|EFK89056.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 146-1]
 gi|305852003|gb|EFM52455.1| NADH dehydrogenase subunit J [Escherichia coli NC101]
 gi|306908666|gb|EFN39163.1| NADH dehydrogenase (quinone) [Escherichia coli W]
 gi|307554342|gb|ADN47117.1| NADH dehydrogenase I chain J [Escherichia coli ABU 83972]
 gi|307626184|gb|ADN70488.1| NADH dehydrogenase subunit J [Escherichia coli UM146]
 gi|308123445|gb|EFO60707.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 145-7]
 gi|308927386|gb|EFP72860.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella dysenteriae 1617]
 gi|309702592|emb|CBJ01920.1| NADH-quinone oxidoreductase chain J [Escherichia coli ETEC H10407]
 gi|310332056|gb|EFP99291.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 1827-70]
 gi|312287775|gb|EFR15680.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 2362-75]
 gi|312946898|gb|ADR27725.1| NADH dehydrogenase subunit J [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313651103|gb|EFS15502.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri 2a str. 2457T]
 gi|315061572|gb|ADT75899.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia
           coli W]
 gi|315136914|dbj|BAJ44073.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli DH1]
 gi|315255214|gb|EFU35182.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 85-1]
 gi|315285920|gb|EFU45358.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 110-3]
 gi|315292247|gb|EFU51599.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 153-1]
 gi|315298121|gb|EFU57390.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 16-3]
 gi|315615549|gb|EFU96181.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 3431]
 gi|320177162|gb|EFW52174.1| NADH-ubiquinone oxidoreductase chain J [Shigella dysenteriae CDC
           74-1112]
 gi|320183375|gb|EFW58227.1| NADH-ubiquinone oxidoreductase chain J [Shigella flexneri CDC
           796-83]
 gi|320192099|gb|EFW66744.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7
           str. EC1212]
 gi|320199868|gb|EFW74457.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli EC4100B]
 gi|320641107|gb|EFX10586.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H7
           str. G5101]
 gi|320646495|gb|EFX15414.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H-
           str. 493-89]
 gi|320651592|gb|EFX19972.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H-
           str. H 2687]
 gi|320657344|gb|EFX25146.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320667864|gb|EFX34772.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H7
           str. LSU-61]
 gi|323156430|gb|EFZ42585.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli EPECa14]
 gi|323161614|gb|EFZ47499.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli E128010]
 gi|323171961|gb|EFZ57605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli LT-68]
 gi|323176795|gb|EFZ62385.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 1180]
 gi|323184401|gb|EFZ69777.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli 1357]
 gi|323187995|gb|EFZ73290.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli RN587/1]
 gi|323377848|gb|ADX50116.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli KO11]
 gi|323936570|gb|EGB32857.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli E1520]
 gi|323941023|gb|EGB37210.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli E482]
 gi|323944793|gb|EGB40859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli H120]
 gi|323956046|gb|EGB51799.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli H263]
 gi|323961463|gb|EGB57073.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli H489]
 gi|323967721|gb|EGB63133.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli M863]
 gi|323973015|gb|EGB68209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli TA007]
 gi|323977519|gb|EGB72605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli TW10509]
 gi|324006670|gb|EGB75889.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 57-2]
 gi|324013180|gb|EGB82399.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 60-1]
 gi|324020876|gb|EGB90095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 117-3]
 gi|324112812|gb|EGC06788.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           fergusonii B253]
 gi|324117842|gb|EGC11741.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli E1167]
 gi|325496685|gb|EGC94544.1| NADH dehydrogenase subunit J [Escherichia fergusonii ECD227]
 gi|326339631|gb|EGD63442.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7
           str. 1125]
 gi|326344093|gb|EGD67854.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7
           str. 1044]
 gi|327252550|gb|EGE64209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Escherichia coli STEC_7v]
 gi|330912105|gb|EGH40615.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli AA86]
 gi|331039716|gb|EGI11936.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H736]
 gi|331043659|gb|EGI15797.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli M605]
 gi|331048571|gb|EGI20647.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli M718]
 gi|331056608|gb|EGI28617.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA206]
 gi|331059593|gb|EGI31570.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA143]
 gi|331064172|gb|EGI36083.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA271]
 gi|331069058|gb|EGI40450.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA280]
 gi|331074686|gb|EGI46006.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H591]
 gi|331078904|gb|EGI50106.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit
           J) (NDH-1 subunit J) (NUO10) [Escherichia coli H299]
 gi|332088410|gb|EGI93528.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella boydii 5216-82]
 gi|332090625|gb|EGI95721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella dysenteriae 155-74]
 gi|332093678|gb|EGI98736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella boydii 3594-74]
 gi|332100926|gb|EGJ04272.1| NADH:ubiquinone oxidoreductase membrane subunit J [Shigella sp. D9]
 gi|332344061|gb|AEE57395.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Escherichia
           coli UMNK88]
 gi|332754928|gb|EGJ85293.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri 4343-70]
 gi|332755329|gb|EGJ85693.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri K-671]
 gi|332756223|gb|EGJ86574.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri 2747-71]
 gi|333001424|gb|EGK20992.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri VA-6]
 gi|333001957|gb|EGK21523.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri K-218]
 gi|333002647|gb|EGK22207.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri K-272]
 gi|333016220|gb|EGK35551.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri K-304]
 gi|333016531|gb|EGK35861.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella flexneri K-227]
          Length = 184

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|320196147|gb|EFW70771.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli WV_060327]
          Length = 184

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPVSAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|319955926|ref|YP_004167189.1| NADH dehydrogenase subunit j [Nitratifractor salsuginis DSM 16511]
 gi|319418330|gb|ADV45440.1| NADH dehydrogenase subunit J [Nitratifractor salsuginis DSM 16511]
          Length = 186

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++  FY F+ +      + V  +N +Y++ SL    V  +GLF +LGA+F+ ++ L+VY
Sbjct: 1   METFAFYFFAVLITALFLVTVLSQNILYAMTSLAAGMVLISGLFFILGADFLGVVQLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV+  + F +M  D    + E R     L     G+ A  L+V  +   +      L 
Sbjct: 61  VGAVMALYAFAMMFFDATGRIKE-RHSHPALVFLLGGLTAVMLVVIFAAPQIGHNIQALF 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                 +N   +G VL+T+Y  P E++  +LL++MI  I+L  + 
Sbjct: 120 PTADGMDNPHAVGLVLFTKYLVPFEVAAVMLLVAMIAGIILAGKK 164


>gi|317180995|dbj|BAJ58781.1| NADH dehydrogenase subunit J [Helicobacter pylori F32]
          Length = 182

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVAILLTLILSAPSIGENLSNQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|271501260|ref|YP_003334285.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech586]
 gi|270344815|gb|ACZ77580.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech586]
          Length = 183

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 94/184 (51%), Gaps = 5/184 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY G
Sbjct: 2   EFAFYATAIIAVLATLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  K      + +IG  A  LI+ A      ++  + + +
Sbjct: 62  AIMVLFVFVVMMLNLGNSVDEQEKL-WLKPAVWIGPGALSLILLAVIVKGITSITDQN-I 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQLE 181
           V    + + +G  L+  Y   +E++  +LL  ++ A  +    +R     K QD  K++ 
Sbjct: 120 VGNMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGDLVAKDQDADKKIT 179

Query: 182 SNPD 185
               
Sbjct: 180 EERA 183


>gi|262195157|ref|YP_003266366.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliangium
           ochraceum DSM 14365]
 gi|262078504|gb|ACY14473.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliangium
           ochraceum DSM 14365]
          Length = 282

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 16/178 (8%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            SL F+LF+ + +  S  V+T RN I +V  ++  F   A ++ +L A F+A I ++VY 
Sbjct: 92  ASLMFWLFALLTVGGSIFVITRRNLISAVMGMVGTFFAIAAVYTMLFAHFLAAIQVLVYA 151

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAEGEL 121
           GA++V F+F+IM+L+   +  EP  + G +G+     L A L+  + A  + V  +  +L
Sbjct: 152 GAIMVLFVFVIMILNKPED--EPWGRSGIIGNVLGSALVAYLLWRIGAVLWAVPVSPAQL 209

Query: 122 SRL------------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                          V    +   IG+ L+  Y +P E    +LL++++GA+ +   H
Sbjct: 210 LPPGGVTVVTGVTETVHDYGSTMAIGQNLFRDYLFPFEAVSLVLLIAVVGALAVARPH 267


>gi|319650856|ref|ZP_08004993.1| hypothetical protein HMPREF1013_01599 [Bacillus sp. 2_A_57_CT2]
 gi|317397454|gb|EFV78155.1| hypothetical protein HMPREF1013_01599 [Bacillus sp. 2_A_57_CT2]
          Length = 173

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 92/167 (55%), Gaps = 4/167 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + L F   + +A+I   L++ +   ++ V +L+F FV+ AG+++LL AEF+A + +++Y 
Sbjct: 6   EFLAFMFLALVAVIGGVLLLNLTKVVHMVVALVFTFVSIAGIYVLLSAEFLAAVQILIYS 65

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+ +  LF IM L    + +EP+  R      F+G+L     V      +++ +   + 
Sbjct: 66  GAITIIMLFGIM-LTRHNDTSEPKTGRFRKLLLFLGVLGFAFAVYIG---IYNLDLPSAP 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                NN E IG  LY+++  P E++  +LL+++IG+IVL  R    
Sbjct: 122 NDLHVNNTEQIGIELYSKFIIPFEVTSVLLLVALIGSIVLAKRDDEK 168


>gi|146312466|ref|YP_001177540.1| NADH dehydrogenase subunit J [Enterobacter sp. 638]
 gi|145319342|gb|ABP61489.1| NADH dehydrogenase subunit J [Enterobacter sp. 638]
          Length = 184

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGAEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKEVGIALFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|253989008|ref|YP_003040364.1| NADH dehydrogenase subunit J [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780458|emb|CAQ83620.1| nadh dehydrogenase i chain j (nadh-ubiquinone oxidoreductase chain
           j) [Photorhabdus asymbiotica]
          Length = 181

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 90/168 (53%), Gaps = 2/168 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY    +AI+++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFTFYTAGLVAILATIRVITHTNPVHALLYLIVSLLALSAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELS- 122
           A++V F+F++MML++   V E  +      ++   GIL+A L+V     ++  + G ++ 
Sbjct: 62  AIMVLFVFVVMMLNLGKSVVEQERVWLKPRTWIGPGILSAVLLVILVYTIINVSHGNIAD 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +  +  + + +G  L+  Y   +E++  +LL  M+ A  +   H++ 
Sbjct: 122 NITGEVISAKEVGISLFGPYVLAVELASLLLLAGMVVAYHIGREHKQG 169


>gi|51893909|ref|YP_076600.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM
           14863]
 gi|51857598|dbj|BAD41756.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM
           14863]
          Length = 176

 Score =  117 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 82/167 (49%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q   F + + + ++S++ +VT     ++   +  +F   AG+FLL+ AEF+A I ++
Sbjct: 7   MSGQFWTFIILAVVTLVSTYRMVTTPLITHAALFMALSFTAVAGIFLLMQAEFIAAIQVL 66

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA+    +F IM+  +     + +++     S    ++   +      ++  +A   
Sbjct: 67  VYAGAITTMVIFAIMLSGLRDIKRQQQERVKLWRSNPAVLVVGAVFAAFMLYLYSTANLP 126

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                 +   V  IG  L+T Y  P E++  +LL++MIGAI+L  + 
Sbjct: 127 AGGGERQVVPVSAIGSQLFTTYVIPFEVASILLLVAMIGAIILTAKE 173


>gi|297380449|gb|ADI35336.1| NAD(P)H-quinone oxidoreductase chain 6 [Helicobacter pylori v225d]
          Length = 182

 Score =  117 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|308183379|ref|YP_003927506.1| NADH dehydrogenase subunit J [Helicobacter pylori PeCan4]
 gi|308065564|gb|ADO07456.1| NADH dehydrogenase subunit J [Helicobacter pylori PeCan4]
          Length = 182

 Score =  117 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCALSFGVAILLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|77917828|ref|YP_355643.1| NADH dehydrogenase I subunit J [Pelobacter carbinolicus DSM 2380]
 gi|77543911|gb|ABA87473.1| NADH dehydrogenase subunit J [Pelobacter carbinolicus DSM 2380]
          Length = 171

 Score =  117 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 4/175 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +L FY+ + + ++++ L +T +NP+++V  L+ A    A L+ LLGA  +A   +++Y
Sbjct: 1   MATLLFYILAVITLLATLLCLTRKNPVHAVLYLVHALFAVALLYFLLGAPLLAAWQVILY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IM++D    +AE R+  G+       +L+  L+ C    +V        
Sbjct: 61  AGAIMVLFLFVIMLIDP--SLAEKRRPGGWPRWLPAALLSGSLLACGGALIVMDPVATGG 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177
            + F+       G+ L+  Y   +EI   ILL + +GA  L  RH     R+D+S
Sbjct: 119 IVSFQLT-PRAFGRALFENYGLAVEIISLILLFAAVGAFHLGRRHDSTT-REDVS 171


>gi|188533355|ref|YP_001907152.1| NADH dehydrogenase subunit J [Erwinia tasmaniensis Et1/99]
 gi|188028397|emb|CAO96258.1| NADH dehydrogenase I chain J [Erwinia tasmaniensis Et1/99]
          Length = 183

 Score =  117 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL   +A++++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +  K     G +    L + L++    + + S   +    
Sbjct: 62  AIMVLFVFVVMMLNLGGAEVQQEKDWLKPGMWIGPGLLSLLLLVTLVYAILSVNDQGIDG 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                  + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 122 TMIDG--KQVGISLFGPYVLAVELASMLLLAGLVVAFHVGREQR 163


>gi|188528058|ref|YP_001910745.1| NADH dehydrogenase subunit J [Helicobacter pylori Shi470]
 gi|188144298|gb|ACD48715.1| NADH dehydrogenase subunit J [Helicobacter pylori Shi470]
          Length = 182

 Score =  117 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSIGENLSNQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDVQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|253689140|ref|YP_003018330.1| NADH dehydrogenase (quinone) [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755718|gb|ACT13794.1| NADH dehydrogenase (quinone) [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 186

 Score =  117 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 88/167 (52%), Gaps = 4/167 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY    +AI+++  V+T  NP++++  ++ + +  AG+F  LGA F   ++++VY G
Sbjct: 2   EFAFYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSR 123
           A++V F+F++MML++   V E  +      ++   GIL+  L+V   N ++   E  ++ 
Sbjct: 62  AIMVLFVFVVMMLNLGNSVEEQERNWLKPSAWVGPGILSLALLVIVVNAILSLKEQGITG 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              +    + +G  L+  Y   +E++  +LL  ++ A  +    +R 
Sbjct: 122 TPVEA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165


>gi|210135428|ref|YP_002301867.1| NADH dehydrogenase subunit J [Helicobacter pylori P12]
 gi|210133396|gb|ACJ08387.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori P12]
          Length = 182

 Score =  117 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQNPKILCVLSFGVALLLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|307131806|ref|YP_003883822.1| NADH:ubiquinone oxidoreductase membrane subunit J [Dickeya dadantii
           3937]
 gi|306529335|gb|ADM99265.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Dickeya
           dadantii 3937]
          Length = 183

 Score =  117 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY G
Sbjct: 2   EFAFYATAIIAVLATLRVITHTNPVHALLYLIVSLLAVAGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  K       +    + + +++      + S  G+   +
Sbjct: 62  AIMVLFVFVVMMLNLGNSVDEQEKLWLKPSVWVGPGVLSLILLAIIVKGILSVTGQ--NI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E++  +LL  ++ A  +    +R 
Sbjct: 120 AGNIVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165


>gi|257852606|gb|ACV71315.1| NADH dehydrogenase subunit 6 [Euphorbia polychroma]
          Length = 161

 Score =  117 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
             +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  I I  
Sbjct: 1   RAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAE 60

Query: 84  AEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFKGNNVE 132
                 R    S  IG I   E+     N  +     + +            V    N+E
Sbjct: 61  IHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLE 120

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +G +LYT Y+    +   ILL++MIGAIVL +     
Sbjct: 121 TLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTH 158


>gi|7649019|gb|AAF65737.1|AF228525_7 F420H2 dehydrogenase subunit FpoJ [Methanosarcina mazei Go1]
          Length = 176

 Score =  117 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 2/168 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++  F L + + +  +  VV  ++ + +  +LI      AGL++LL A+F+ +I ++VY
Sbjct: 11  LETAVFGLLALVTVFFAIFVVIAKDVVRAGLALIMCMFGVAGLYILLNAQFLGVIQVLVY 70

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +GA+ V  LF +M+   +I     +  R    +F + +L   ++V  +    ++   EL 
Sbjct: 71  IGAIGVLILFAVMLTKREIGGGPVQINR--PLAFLVCLLFVAVVVTGAFGTSWNTVSELP 128

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                 +N+E IG +++T +  P E+   +LL S+IGAI +       
Sbjct: 129 ENPADPSNIEGIGMLIFTHFVAPFEVLSIVLLASLIGAIYMAKGEGNR 176


>gi|291283521|ref|YP_003500339.1| NADH-quinone oxidoreductase subunit J [Escherichia coli O55:H7 str.
           CB9615]
 gi|209765154|gb|ACI80889.1| NADH dehydrogenase I chain J [Escherichia coli]
 gi|290763394|gb|ADD57355.1| NADH-quinone oxidoreductase subunit J [Escherichia coli O55:H7 str.
           CB9615]
 gi|320663046|gb|EFX30363.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 184

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|317178012|dbj|BAJ55801.1| NADH dehydrogenase subunit J [Helicobacter pylori F16]
          Length = 182

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAEGE 120
           VGAVIV + F +M  +   EV E ++    L +   G+     ++ ++  +    S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVALLLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N+E IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDVQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|167549681|ref|ZP_02343440.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|198244071|ref|YP_002216390.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|238912401|ref|ZP_04656238.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|197938587|gb|ACH75920.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205325286|gb|EDZ13125.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|326624141|gb|EGE30486.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 184

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  L+ + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAIMLAVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|296130542|ref|YP_003637792.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas
           flavigena DSM 20109]
 gi|296022357|gb|ADG75593.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas
           flavigena DSM 20109]
          Length = 325

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 87/167 (52%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F+    + ++++  ++  R  +++  ++IF  ++ A L++  GAEF+ ++ +VV
Sbjct: 23  TAEAVLFWTLGPLMVLAALGLLLARKAVHAALAVIFIMISLAFLYVAQGAEFLGVVQVVV 82

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG      +  L   +++            E 
Sbjct: 83  YTGAVMMLFLFVLMLVGVDRSDSLVETIRGQRWIGLLAGLGLGVVLAGVVGRATYGAPEG 142

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + +N E +  V++ Q+   +E+ G +L+ + +GA+VL  R R
Sbjct: 143 LATANQPSNPEAVAHVIFGQHVLAMEVVGALLVTAALGALVLTHRGR 189


>gi|159901497|ref|YP_001547744.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894536|gb|ABX07616.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 220

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 13/174 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F + + + + S  +VVTVRN I+S   LI +F+  A L+LL+ AEF+A++ ++VY GAV
Sbjct: 8   VFIVIALLTLGSGIMVVTVRNIIHSALWLIASFIGVAALYLLMEAEFLAVVQILVYAGAV 67

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA-----SNFMVFSAEGEL 121
            +  LF IM+               +  +  I +    +IV       S +   S   ++
Sbjct: 68  SILVLFAIMLTRQVTGEGVRVVFERWWVALLIALGLFGVIVPTLWQHGSTWEEASKLAQV 127

Query: 122 SRLVFKGN--------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                +G             IG+    +Y  P E+   +LL+++IGAIV+    
Sbjct: 128 GPAPVEGTAAAGLQVATATEIGRSFMGEYLLPFEVISILLLMALIGAIVIAYEE 181


>gi|217032332|ref|ZP_03437828.1| hypothetical protein HPB128_132g30 [Helicobacter pylori B128]
 gi|298735707|ref|YP_003728232.1| NADH dehydrogenase I subunit J [Helicobacter pylori B8]
 gi|216945998|gb|EEC24612.1| hypothetical protein HPB128_132g30 [Helicobacter pylori B128]
 gi|298354896|emb|CBI65768.1| NADH dehydrogenase I chain J [Helicobacter pylori B8]
          Length = 182

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVAVLLTLILSAPSIGENLSNQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|157325586|ref|YP_001468364.1| NADH dehydrogenase subunit 6 [Ipomoea purpurea]
 gi|221272327|sp|A7Y3L7|NU6C_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|157056814|gb|ABV02404.1| NADH-plastoquinone oxidoreductase subunit 6 [Ipomoea purpurea]
          Length = 176

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ S  VV   NPIYS FSL    V  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLILGSIGVVLFPNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  LF +M L+         +             S FI +++  L       +  
Sbjct: 67  VGAINVLILFAVMFLNGSEYSNDFPLWTLGDGITSQVCISLFISLISTILDTSWYGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +   ++       +N + IG  L T +  P E+   ILL+++IGAIV+  +
Sbjct: 127 TRSNQIIEQDL-ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIVIARQ 176


>gi|254779812|ref|YP_003057918.1| NADH dehydrogenase subunit J [Helicobacter pylori B38]
 gi|254001724|emb|CAX29955.1| NADH-ubiquinone oxidoreductase, NQO10 subunit [Helicobacter pylori
           B38]
          Length = 182

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|15606571|ref|NP_213951.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5]
 gi|2983792|gb|AAC07350.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5]
          Length = 178

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 2/169 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ + L F  FS +AI+S   ++T+RNP+Y V +L+ + +  AG+F   GAE V  + L+
Sbjct: 1   MMGRLLIFGFFSILAILSGIGIITLRNPVYVVVALLSSLIAVAGIFFTAGAELVGALQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAE 118
           +Y  A+ VF++ +I  +  +         R  G +    +  L  E+IV     +  S E
Sbjct: 61  IYAVAIAVFYIIVISAVPWEKAKKSESHYRFEGLISLPVVLFLYIEMIVVFLLGVKASPE 120

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           G++++ + K  N E IG +L+++Y    E+   +LL+ MIGA+++  + 
Sbjct: 121 GKIAKFIEKFGNTEVIGAILFSKYFLAFEVVSIVLLMGMIGAVLIGRKE 169


>gi|261839987|gb|ACX99752.1| NADH dehydrogenase subunit J [Helicobacter pylori 52]
 gi|317013057|gb|ADU83665.1| NADH dehydrogenase subunit J [Helicobacter pylori Lithuania75]
          Length = 182

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + IL   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVAILLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|308185017|ref|YP_003929150.1| NADH dehydrogenase subunit J [Helicobacter pylori SJM180]
 gi|308060937|gb|ADO02833.1| NADH dehydrogenase subunit J [Helicobacter pylori SJM180]
          Length = 182

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|157144789|ref|YP_001452108.1| NADH dehydrogenase subunit J [Citrobacter koseri ATCC BAA-895]
 gi|157081994|gb|ABV11672.1| hypothetical protein CKO_00516 [Citrobacter koseri ATCC BAA-895]
          Length = 184

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGISLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|15645883|ref|NP_208061.1| NADH dehydrogenase subunit J [Helicobacter pylori 26695]
 gi|2314434|gb|AAD08313.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Helicobacter
           pylori 26695]
          Length = 182

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|317009953|gb|ADU80533.1| NADH dehydrogenase subunit J [Helicobacter pylori India7]
          Length = 182

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVALLLTLILSAPSIGENLSNQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDVQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|323952073|gb|EGB47947.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli H252]
          Length = 184

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGGFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|16761245|ref|NP_456862.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765647|ref|NP_461262.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141059|ref|NP_804401.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412783|ref|YP_149858.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180890|ref|YP_217307.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161502535|ref|YP_001569647.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161612952|ref|YP_001586917.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167994668|ref|ZP_02575759.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229689|ref|ZP_02654747.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237337|ref|ZP_02662395.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242438|ref|ZP_02667370.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261664|ref|ZP_02683637.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465977|ref|ZP_02699847.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168817950|ref|ZP_02829950.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445907|ref|YP_002041580.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451507|ref|YP_002046373.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470957|ref|ZP_03076941.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194738076|ref|YP_002115389.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197248229|ref|YP_002147278.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262113|ref|ZP_03162187.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361717|ref|YP_002141353.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200387795|ref|ZP_03214407.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929159|ref|ZP_03220302.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353435|ref|YP_002227236.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857738|ref|YP_002244389.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213052936|ref|ZP_03345814.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213419032|ref|ZP_03352098.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427018|ref|ZP_03359768.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580775|ref|ZP_03362601.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213612296|ref|ZP_03370122.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213645877|ref|ZP_03375930.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865414|ref|ZP_03387533.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224583194|ref|YP_002636992.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|289829691|ref|ZP_06547232.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25285204|pir||AF0796 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420861|gb|AAL21221.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503544|emb|CAD07552.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136685|gb|AAO68250.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127040|gb|AAV76546.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128523|gb|AAX66226.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|160863882|gb|ABX20505.1| hypothetical protein SARI_00579 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161362316|gb|ABX66084.1| hypothetical protein SPAB_00658 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404570|gb|ACF64792.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409811|gb|ACF70030.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457321|gb|EDX46160.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713578|gb|ACF92799.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631291|gb|EDX49851.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093193|emb|CAR58637.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211932|gb|ACH49329.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240368|gb|EDY22988.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289699|gb|EDY29062.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604893|gb|EDZ03438.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321703|gb|EDZ06902.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273216|emb|CAR38179.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205327485|gb|EDZ14249.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335895|gb|EDZ22659.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338451|gb|EDZ25215.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205345142|gb|EDZ31906.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349398|gb|EDZ36029.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709541|emb|CAR33886.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467721|gb|ACN45551.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247526|emb|CBG25353.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994415|gb|ACY89300.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158878|emb|CBW18391.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913311|dbj|BAJ37285.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086754|emb|CBY96526.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222978|gb|EFX48049.1| NADH-ubiquinone oxidoreductase chain J [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322617066|gb|EFY13972.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617628|gb|EFY14527.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624742|gb|EFY21571.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630291|gb|EFY27061.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634472|gb|EFY31205.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639182|gb|EFY35874.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640045|gb|EFY36712.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645734|gb|EFY42258.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651509|gb|EFY47884.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656069|gb|EFY52368.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659422|gb|EFY55669.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665882|gb|EFY62065.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669878|gb|EFY66019.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673864|gb|EFY69961.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678622|gb|EFY74678.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683582|gb|EFY79596.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687658|gb|EFY83628.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715369|gb|EFZ06940.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323130651|gb|ADX18081.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323193508|gb|EFZ78713.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198413|gb|EFZ83515.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201927|gb|EFZ86989.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208535|gb|EFZ93474.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209756|gb|EFZ94680.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218292|gb|EGA03002.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222950|gb|EGA07299.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227386|gb|EGA11551.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232287|gb|EGA16390.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235679|gb|EGA19763.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241160|gb|EGA25196.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244902|gb|EGA28904.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250021|gb|EGA33915.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251633|gb|EGA35501.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323254944|gb|EGA38735.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323268100|gb|EGA51577.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270807|gb|EGA54245.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326628527|gb|EGE34870.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989253|gb|AEF08236.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 184

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  L+ + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAIMLAVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|37526969|ref|NP_930313.1| NADH dehydrogenase subunit J [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786402|emb|CAE15455.1| NADH dehydrogenase I chain J (NADH-ubiquinone oxidoreductase chain
           J) [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 181

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 90/168 (53%), Gaps = 2/168 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY    +AI+++  V+T  NPI+++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFTFYTAGLIAILATIRVITHTNPIHALLYLIVSLLALSAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELS- 122
           A++V F+F++MML++   V E  +      ++   GIL+  L+V     ++  + G+++ 
Sbjct: 62  AIMVLFVFVVMMLNLGKSVVEQERVWLKPRTWIGPGILSTMLLVVLVYTIINVSHGDIAD 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +  +  + + +G  L+  Y   +E++  +LL  M+ A  +   H++ 
Sbjct: 122 NITGEVVSAKEVGISLFGPYVLAVELASLLLLAGMVVAYHIGREHKQG 169


>gi|317014661|gb|ADU82097.1| NADH:ubiquinone oxidoreductase subunit J [Helicobacter pylori
           Gambia94/24]
          Length = 182

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|307637940|gb|ADN80390.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 908]
 gi|325996544|gb|ADZ51949.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 2018]
 gi|325998133|gb|ADZ50341.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 2017]
          Length = 182

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|304413379|ref|ZP_07394852.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Candidatus
           Regiella insecticola LSR1]
 gi|304284222|gb|EFL92615.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Candidatus
           Regiella insecticola LSR1]
          Length = 191

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FY  + +A++++  V++  NPI+++  L+ + +  A +F  LGA F   + ++VY
Sbjct: 1   MMEFVFYTAAVIAVLATLRVISHHNPIHALLYLVVSLLAIAAVFFSLGAYFAGALEIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F++MML++   + +  K       +    L +  ++      + S   E+ 
Sbjct: 61  AGAIMVLFVFVVMMLNLGDSIQQQEKAWLKPSVWIGPGLLSLTLLVVLMMALGSVTAEIR 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             +      + +G  L+  Y   +E++  +LL  ++ A  L    R
Sbjct: 121 GTMVDA---KQVGISLFGPYVLAVELASMLLLAGLVVAFHLGREDR 163


>gi|15612255|ref|NP_223908.1| NADH dehydrogenase subunit J [Helicobacter pylori J99]
 gi|4155780|gb|AAD06756.1| NADH oxidoreductase I [Helicobacter pylori J99]
          Length = 182

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N++ IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|317182518|dbj|BAJ60302.1| NADH dehydrogenase subunit J [Helicobacter pylori F57]
          Length = 182

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 2/162 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY F+ + +  + +V+T  N +Y++ +L    V  +  F LL AEF+ ++ + VY
Sbjct: 2   FETIAFYFFAILTLSMALVVITTTNILYAITALASNMVFISAFFFLLDAEFLGVVQITVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120
           VGAVIV + F +M  +   EV E ++    L   SF + +L   ++   S     S +  
Sbjct: 62  VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVALLLTLILSAPSIGENLSKQVN 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            + +  +  N+E IG VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 SNAIDVQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163


>gi|325610525|gb|ADZ36471.1| NADH dehydrogenase subunit 6 [Franklinia alatamaha]
          Length = 176

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +         F+ I+SS  V+   NPIYS FSL   FV  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGFVLILSSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  +F +M ++         +             S F+ ++   L       +  
Sbjct: 67  VGAINVLIIFAVMFMNGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWA 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +   ++       +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 127 TKSNQILEQDL-ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|229158854|ref|ZP_04286912.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC
           4342]
 gi|228624838|gb|EEK81607.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC
           4342]
          Length = 162

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           AII   L++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F I
Sbjct: 3   AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
           M+   +         R ++  FF  +    ++  A N + F+ E     L     N   I
Sbjct: 63  MLTKHNAGNESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           G +LY++Y  P E+   ILL++++GAI+L  +  ++
Sbjct: 122 GTLLYSKYIIPFELISVILLVALVGAIILAKKDEKE 157


>gi|322436011|ref|YP_004218223.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidobacterium sp. MP5ACTX9]
 gi|321163738|gb|ADW69443.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidobacterium sp. MP5ACTX9]
          Length = 174

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 10/174 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ   F +F+ +AI  +  ++  R+PI S  SL+   ++ A L+  LGAEF+A   ++VY
Sbjct: 1   MQLALFIIFAALAIAGALNLLLQRHPINSALSLVVVMMSLAVLYWTLGAEFLAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F++M+L+      E  +  G   ++  G+  A  + C  +F+  +    + 
Sbjct: 61  AGAIMVLFVFVVMLLN----AGEEERTTGSRAAYLAGVPGATAVFCLLSFVFLTESKAIG 116

Query: 123 RLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                G      NN+  I +VL+T+   P E++  ++L++++GA+VL  +   +
Sbjct: 117 NATLGGMLSGGVNNIAEISQVLFTRLLLPFEVTSVLILVAILGAVVLARKTEPE 170


>gi|293415573|ref|ZP_06658216.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B185]
 gi|291433221|gb|EFF06200.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B185]
          Length = 184

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|223936523|ref|ZP_03628434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium
           Ellin514]
 gi|223894687|gb|EEF61137.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium
           Ellin514]
          Length = 191

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 4/169 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + ++S    +++RN ++   SL   F   A ++L L A+FV    ++VY+GA
Sbjct: 3   ITFAIIAALTLVSGIAAMSLRNLVHCALSLAITFAGLAAMYLQLDAQFVGFAQILVYIGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V +  +F I +L    E  +P   R ++    I +    +++     +  S   +     
Sbjct: 63  VAILIVFAI-LLTRSSEAPQPVISRSWIVGIAIAVAVFGVMI---RLIASSPIAQRGWPE 118

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             G  V+ IG  L T++  PLE  G +L ++ IGA+++ +  +     Q
Sbjct: 119 KPGPTVKQIGDQLMTRFVLPLEAMGLLLTVATIGAVIIAMNEKTKAGLQ 167


>gi|297625737|ref|YP_003687500.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921502|emb|CBL56056.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 289

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 1/147 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q++ F++   +++I+   +V  R P++S   L    V  AGL+  L A F+ +  ++V
Sbjct: 6   TAQAVAFWVLGPLSVIAGVGMVVNRKPVHSALCLAGLMVCLAGLYASLDAPFLFVAQIIV 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGE 120
           Y GAV++ F+F +M++ ID         +G  + +    +    L+V A    + S+   
Sbjct: 66  YTGAVMMLFVFTMMVIGIDTVDEMIETIKGQRVAAIIGVVGLLALLVLAVGHGIVSSPAG 125

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147
           L +      NV ++  ++++ Y +P E
Sbjct: 126 LEQATGADGNVRSLAYLIFSDYVFPFE 152


>gi|257453975|ref|ZP_05619251.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Enhydrobacter aerosaccus SK60]
 gi|257448640|gb|EEV23607.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Enhydrobacter aerosaccus SK60]
          Length = 214

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 90/170 (52%), Gaps = 6/170 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           +   ++ FYL + +AI++S  V+T  NP++++ ++I   +  +G+F  LGA F   + ++
Sbjct: 2   ITGATIGFYLLAIVAILASLRVITRTNPVHALLNMIVTLLALSGIFFALGAPFAGALEII 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V F+F++MML++  + +   ++     S +        IV  + F +   +  
Sbjct: 62  VYAGAIMVLFVFVVMMLNLGTQ-STLEEESWLSSSAWAVPAGLAFIVGLTLFSLIGMKHG 120

Query: 121 LSRLVFKGNNVE-----NIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
              ++     VE      IG  L+T+Y   +EI+GF+LL  ++ A  L  
Sbjct: 121 FEGIMPAFIGVEPVTAKMIGAKLFTEYLLLVEIAGFLLLAGLVAAYHLAK 170


>gi|397907|emb|CAA48369.1| NADH dehydrogenase I, subunit nuoJ [Escherichia coli]
          Length = 184

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E   +      +    + + +++    + +      ++  
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQETQWLKPQVWIGPAILSAIMLVVIVYAILG----VNDQ 117

Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              G  +  + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 118 GIDGTPISRKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|163781770|ref|ZP_02176770.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882990|gb|EDP76494.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
          Length = 177

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F +FS  AIIS   V+T  NPIY +  L+ A +  AG+F   GAE V  + L++Y  A
Sbjct: 5   VIFLIFSAWAIISGVGVITFTNPIYVILWLLSALIAVAGIFFTAGAELVGALQLLIYAVA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           + VF++F++  +  +  + +    R  G L    + +L  E+ +     +  S EG+   
Sbjct: 65  IAVFYVFVLTAVPWEKAIKKGSHYRMEGVLSLPLVVLLYVEMAIVFFLGITASPEGKFRA 124

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            + K  N E +G +L+T+Y +  E+   +LL+ MIGA+++  + 
Sbjct: 125 FIEKLGNTEVVGSILFTRYFFAFEVVSLVLLIGMIGAVLIGRKE 168


>gi|193215449|ref|YP_001996648.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088926|gb|ACF14201.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chloroherpeton thalassium ATCC 35110]
          Length = 176

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 1/168 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++  FF+ F  + I  +   V  +NP+ S   L+  F    GL+L L A+F+A++ ++
Sbjct: 1   MALEEFFFFFFGALVITGTLGTVLSKNPVSSALFLVLNFFALGGLYLSLEAQFIAVVQVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEG 119
           VY GA++V FLF IM+L ++ E +   +     G +F I  +    I+    F +   + 
Sbjct: 61  VYAGAIMVLFLFTIMLLSLEDESSLIERFDLKKGFAFLISGVFLVEILYIVGFKLTPVKP 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                  +  +V+ IGK L T+Y +P EI   +LLL++IGA++L  R 
Sbjct: 121 VSRLTPVQIGDVKTIGKALLTEYVFPFEIISIVLLLAIIGAVLLAKRK 168


>gi|320178747|gb|EFW53710.1| NADH-ubiquinone oxidoreductase chain J [Shigella boydii ATCC 9905]
          Length = 184

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGITLFGPYVLVVELASMLLLAGLVVAFHVGREER 163


>gi|238759970|ref|ZP_04621123.1| NADH-quinone oxidoreductase subunit J [Yersinia aldovae ATCC 35236]
 gi|238701797|gb|EEP94361.1| NADH-quinone oxidoreductase subunit J [Yersinia aldovae ATCC 35236]
          Length = 181

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     + R           GILA  L+      +   ++  +S  
Sbjct: 62  AIMVLFVFVVMMLNLGNVEQQERDWLKPSLWIGPGILALVLLSVLIYAISSVSDQGISGE 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +      + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 122 MVDA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|242239960|ref|YP_002988141.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech703]
 gi|242132017|gb|ACS86319.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech703]
          Length = 181

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY G
Sbjct: 2   EFAFYATAIIAVLATLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V +  K     G +    + + +++      +F   G+   +
Sbjct: 62  AIMVLFVFVVMMLNLGHSVVDQEKAWLKPGVWIGPGILSLVLLGVIIKGIFRLNGQ--DI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E++  +LL  ++ A  +    +R 
Sbjct: 120 SGGMIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165


>gi|296274494|ref|YP_003657125.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098668|gb|ADG94618.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcobacter
           nitrofigilis DSM 7299]
          Length = 190

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            + + FYLFS + I    + V   N +Y++ SL    +  +  F LL A+F+ ++ +VVY
Sbjct: 2   FEIVAFYLFSILTIFMFGITVFTNNALYALSSLAAGMIFISAFFFLLNADFLGIVQIVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAVI  + F +M  D   EV E  +  G +   F G+ A   +V   + +V +      
Sbjct: 62  TGAVIALYAFGMMFFDSMSEVKEKIQNPGLV-FLFSGLAALITVVAFLSPIVSNNIISEY 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +  +  N +++G VL+T++  P EI+  +LL++MIG I+L  + 
Sbjct: 121 AIHPEYGNTQDVGVVLFTKFLVPFEIAAVMLLVAMIGGIILAGKK 165


>gi|300931367|ref|ZP_07146698.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 187-1]
 gi|300460829|gb|EFK24322.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia
           coli MS 187-1]
          Length = 184

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 80/164 (48%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +    
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDG 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                  + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 122 TPII--AKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|50346838|ref|YP_053209.1| NADH dehydrogenase subunit 6 [Nymphaea alba]
 gi|75275853|sp|Q6EVZ7|NU6C_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|50250383|emb|CAF28649.1| NADH dehydrogenase ND6 subunit [Nymphaea alba]
          Length = 177

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 8/172 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +         I+    VV + NPIYS FSL    V  +  ++   + FVA   L++Y
Sbjct: 7   IHDILLVSLGSGLIVGGLGVVLLTNPIYSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  LF +M ++                       S F  ++A          +  
Sbjct: 67  VGAINVLILFAVMFMNGSEYYNYFHFWTVGDGFTSLVCTSIFFSLIATIPNTSWYGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +   ++       +NV+ IG  L T +  P E+   ILL+S++GAI +  R 
Sbjct: 127 TRSNQIIEQDLT-SNVQQIGIHLSTDFYLPFELISIILLVSLVGAIAMARRE 177


>gi|251789022|ref|YP_003003743.1| NADH dehydrogenase (quinone) [Dickeya zeae Ech1591]
 gi|247537643|gb|ACT06264.1| NADH dehydrogenase (quinone) [Dickeya zeae Ech1591]
          Length = 183

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 91/185 (49%), Gaps = 7/185 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY G
Sbjct: 2   EFAFYATAIIAVLATLRVITHTNPVHALLYLIVSLLAVAGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSR 123
           A++V F+F++MML++   V E  K       +   G+L+  L+      ++   +  ++ 
Sbjct: 62  AIMVLFVFVVMMLNLGNSVDEQEKLWLKPTVWLGPGVLSLVLLAIIVKGIISVTDQNIAG 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQL 180
            +      + +G  L+  Y   +E++  +LL  ++ A  +    +R     K QD  K++
Sbjct: 122 NMIDA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGELIAKDQDADKKI 178

Query: 181 ESNPD 185
                
Sbjct: 179 TEERA 183


>gi|317492615|ref|ZP_07951042.1| NADH-ubiquinone/plastoquinone oxidoreductase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919365|gb|EFV40697.1| NADH-ubiquinone/plastoquinone oxidoreductase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 192

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V++  NP++++  LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVISHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  +       +    L + +++    + + S   +   +
Sbjct: 62  AIMVLFVFVVMMLNLGNSVVEQERAWLKPSLWIGPSLLSLILLAVLVYAIMSVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E+   +LL  ++ A  +   H++ 
Sbjct: 120 SGDMIDAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHKQG 165


>gi|88607226|ref|YP_505038.1| NADH dehydrogenase I, J subunit [Anaplasma phagocytophilum HZ]
 gi|88598289|gb|ABD43759.1| NADH dehydrogenase I, J subunit [Anaplasma phagocytophilum HZ]
          Length = 201

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F+ F+ M + S+  VV   NP+Y+V SLI  F  ++ LF+LLGAE VAM+ +VVY
Sbjct: 1   MVGFLFFCFAGMVVFSAVAVVISSNPVYAVLSLILTFFISSVLFILLGAELVAMLLVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V FLF++MMLD+D      +   GF+  + I +  A  +   + + +F  +    
Sbjct: 61  VGAVAVLFLFVVMMLDMDF----VKSSHGFVRYYPICVALATALFGCATYAIFHTKAAFI 116

Query: 123 RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDI 176
           R + +       NV  IG  +YT+Y Y  ++SG +LL++ IGA+VL +R +    ++Q++
Sbjct: 117 RGIGEAGASAMGNVFLIGSQMYTKYFYAFQMSGILLLVASIGALVLTVRSKAVKSRKQNV 176

Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199
             Q++ +    + +      KGI
Sbjct: 177 YAQVDRSSK--VELCSPAVCKGI 197


>gi|229076507|ref|ZP_04209469.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock4-18]
 gi|228706693|gb|EEL58904.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock4-18]
          Length = 153

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 81/149 (54%), Gaps = 1/149 (0%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           ++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F IM+   + 
Sbjct: 1   MLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGIMLTKHNA 60

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141
           E       R ++  FF  +    ++  A N + FS E     L     N   IG +LY++
Sbjct: 61  ENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQIGTLLYSK 119

Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 120 YIIPFELTSVILLVALVGAIILAKKDEKE 148


>gi|325610509|gb|ADZ36457.1| NADH dehydrogenase subunit 6 [Schima khasiana]
          Length = 176

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +         F+ I++S  V+   NPIYS FSL   FV  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGFVLILASLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  +F +M ++         +             S F+ ++   L       +  
Sbjct: 67  VGAINVLIIFAVMFMNGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWA 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +   ++       +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 127 TKSNQILEQDL-ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|296040753|gb|ADG85344.1| NADH dehydrogenase subunit 6 [Silene conica]
          Length = 157

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 11/157 (7%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A++S  +VV  +NP++SV   I  F N AGL LLLG +F AMI LVVY+GA+ V FLF+
Sbjct: 1   LALVSGLMVVRAKNPVHSVLFFILVFCNTAGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAA---ELIVCASNFMVFSAEGELSRLVF---- 126
           +MM  I I        R    S  IG++       I+   N  +   +G+ + L +    
Sbjct: 61  VMMFHIQIAEIHEEVLRYLPVSGLIGLIFWWEMFFILDNENIPLLPTQGQTNSLTYMVYA 120

Query: 127 ----KGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
                  N+E +G +LYT Y     +S  ILL++MIG
Sbjct: 121 GKVRSWTNLETLGNLLYTHYFVWFLVSSLILLVAMIG 157


>gi|50121943|ref|YP_051110.1| NADH dehydrogenase subunit J [Pectobacterium atrosepticum SCRI1043]
 gi|49612469|emb|CAG75919.1| NADH-quinone oxidoreductase chain J [Pectobacterium atrosepticum
           SCRI1043]
          Length = 187

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 91/168 (54%), Gaps = 6/168 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY    +AI+++  V+T  NP++++  ++ + +  AG+F  LGA F   ++++VY G
Sbjct: 2   EFAFYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELS 122
           A++V F+F++MML++   V E +++     S +IG  IL+  L+V   N ++   +  ++
Sbjct: 62  AIMVLFVFVVMMLNLGSSV-EEQERNWLKPSVWIGPSILSLALLVIVVNAILSLKDQGIT 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
               +    + +G  L+  Y   +E++  +LL  ++ A  +    +R 
Sbjct: 121 GTPVEA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165


>gi|255318324|ref|ZP_05359559.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acinetobacter
           radioresistens SK82]
 gi|262379068|ref|ZP_06072224.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter
           radioresistens SH164]
 gi|255304636|gb|EET83818.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acinetobacter
           radioresistens SK82]
 gi|262298525|gb|EEY86438.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter
           radioresistens SH164]
          Length = 175

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AIIS+  VVT  NP++++ SLI + +  AG+FL++GA F   + ++VY GA++
Sbjct: 5   FYLMALVAIISTIRVVTNTNPVHALLSLIVSLLAVAGIFLIVGAPFAGALEVIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SRLVF 126
           V F+F++MML++  +  E  +K     ++    L + L+     +M+        + L  
Sbjct: 65  VLFVFVVMMLNLGQQTMEQERKWLNSSAWAYPALMSFLMGLILVWMLGGEYTTAGATLGR 124

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +    + +G+ L+T Y   +E++  +LL S++ A  +  R 
Sbjct: 125 EIIGPKAVGQSLFTHYLLLVEVAAMLLLASLVAAFHIGRRE 165


>gi|229099727|ref|ZP_04230653.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-29]
 gi|228683697|gb|EEL37649.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus
           Rock3-29]
          Length = 153

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 81/149 (54%), Gaps = 1/149 (0%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           ++ +   ++ + +L+  F++ AGL+ LL AEF+ +  +++Y GA+ +  +F IM+   + 
Sbjct: 1   MLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGIMLTKHNA 60

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141
           E       R ++  FF  +    ++  A N + FS E     L     N   IG +LY++
Sbjct: 61  ENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQIGTLLYSE 119

Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           Y  P E++  ILL++++GAI+L  +  ++
Sbjct: 120 YIIPFELTSVILLVALVGAIILAKKDEKE 148


>gi|326572765|gb|EGE22751.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC7]
          Length = 210

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 92/161 (57%), Gaps = 5/161 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +AI +S  VVT  N ++++ S+I + +  AG+F +LGA F  ++ ++VY GA++
Sbjct: 17  FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  +  E +    +L +    +    +++  +  + F   G    +  +
Sbjct: 77  VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133

Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + +  +++G  L+T Y   +E++ F+LL +++ A  L  +
Sbjct: 134 SDTISAKDVGIRLFTGYVLLVEVAAFLLLGALVAAYHLGKK 174


>gi|163847541|ref|YP_001635585.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus aurantiacus J-10-fl]
 gi|222525391|ref|YP_002569862.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus sp. Y-400-fl]
 gi|163668830|gb|ABY35196.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449270|gb|ACM53536.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           sp. Y-400-fl]
          Length = 216

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 2/174 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           ++  + F + +   ++S+ +VV+VRN I++   LI  F     L++LL AEF+A++ +++
Sbjct: 3   IVVQIVFGVIALFILVSAAMVVSVRNVIHAALWLIACFFGVGALYMLLEAEFLAVVQVLI 62

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAEG 119
           YVGAV V  LF IM+          +    +     I +L  A  +     N        
Sbjct: 63  YVGAVSVLILFAIMLTRQITGEGIRQLTTRWPVVLAIAVLLFATVMAPTLINQQWNVPPA 122

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                         +G+    ++    ++ G +L +++IGAIV+    R   ++
Sbjct: 123 PPIGTPEPIAGPAELGRGFVNEFLLQFQVVGVLLTVALIGAIVIAYEERARRRK 176


>gi|269955286|ref|YP_003325075.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303967|gb|ACZ29517.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 301

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 89/196 (45%), Gaps = 3/196 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F + + + +I++  ++  +  +++   ++F  ++ A L++   A F+ ++ +VVY 
Sbjct: 7   EAALFGVLAPLMVIAALGLLFAKRAVHAAMCVVFVMISLAILYVANEAPFLGIVQVVVYT 66

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF++M++ +D   +     RG      +      +++                
Sbjct: 67  GAVMMLFLFVLMLVGVDAADSLTETIRGQRWIGVLFGAGLLVVLLTVLARTDLPPAIGLD 126

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISKQL 180
           L     N   +  +L+  Y   +E+ G +L+ + +  +VL  R R   R  +R   ++++
Sbjct: 127 LANAQTNPTGLAAILFGDYVIGMEVIGVLLVTAALAGLVLTHRRRLGPRRSQRTMAAERV 186

Query: 181 ESNPDNSIVMVKVKSG 196
              PD  ++      G
Sbjct: 187 AGLPDGQVLTPLPAPG 202


>gi|148243378|ref|YP_001228535.1| NADH dehydrogenase subunit J [Synechococcus sp. RCC307]
 gi|147851688|emb|CAK29182.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. RCC307]
          Length = 199

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 8/168 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           + Q + F + +   ++ +  VV + N +Y+ F L   F++ AGL+L+L A F+A   +++
Sbjct: 7   ITQLIVFGVLALAVVVGALGVVMLPNIVYAAFLLGGVFLSVAGLYLMLNASFIAAAQILI 66

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEP---RKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           YVGAV V  LF IM+++    +        +R       IG+ A  L V  S     +  
Sbjct: 67  YVGAVNVLILFAIMLVNKKEAMGASPGVGLRRVLSTGVCIGLFALLLRVAFS-----TPW 121

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                     + V  +G+  ++ Y  P E++  +LL++MIGAIVL  R
Sbjct: 122 ATPGPAAIGEDAVIRLGEHFFSDYLLPFELASVLLLMAMIGAIVLARR 169


>gi|261820800|ref|YP_003258906.1| NADH dehydrogenase subunit J [Pectobacterium wasabiae WPP163]
 gi|261604813|gb|ACX87299.1| NADH dehydrogenase (quinone) [Pectobacterium wasabiae WPP163]
          Length = 186

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 91/168 (54%), Gaps = 6/168 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY    +AI+++  V+T  NP++++  ++ + +  AG+F  LGA F   ++++VY G
Sbjct: 2   EFAFYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELS 122
           A++V F+F++MML++   V E +++     S +IG  IL+  L+V   N ++   E  ++
Sbjct: 62  AIMVLFVFVVMMLNLGNSV-EEQERNWLKPSVWIGPSILSLALLVIVVNAILSLKEQGIT 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
               +    + +G  L+  Y   +E++  +LL  ++ A  +    +R 
Sbjct: 121 GTPVEA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165


>gi|238751240|ref|ZP_04612734.1| NADH-quinone oxidoreductase subunit J [Yersinia rohdei ATCC 43380]
 gi|238710514|gb|EEQ02738.1| NADH-quinone oxidoreductase subunit J [Yersinia rohdei ATCC 43380]
          Length = 181

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E +++     S +IG     L++ +      S+  + S +
Sbjct: 62  AIMVLFVFVVMMLNLGK--VEEQEREWLKPSVWIGPGLLALVLLSVLIYAISSVTD-SGI 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|309322498|ref|YP_003934011.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus grandis]
 gi|308223332|gb|ADO23640.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus grandis]
          Length = 176

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ S  VV + NPIYS FSL    V  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF +M ++      +       +G     ++   ++V     ++ ++   + 
Sbjct: 67  VGAINVLILFAVMFMNGSEYYKDLNL--WTVGDGITSLVCTSILVSLMTTILDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                          N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 125 WTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|224437350|ref|ZP_03658322.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818]
 gi|313143813|ref|ZP_07806006.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818]
 gi|313128844|gb|EFR46461.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818]
          Length = 173

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 4/172 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +S+ FYLFS + I+S  +VV+    IY++ +L    +  +G+F  LGAEF+  + +VVY
Sbjct: 2   FESISFYLFSTLCIVSFLIVVSSSRIIYAMTALAGGMIFISGIFFTLGAEFIGAVQIVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            G+VI  + F +M  D   +V E RK    +    +GI    +I+     +    E    
Sbjct: 62  GGSVIALYAFAMMFFDTSKDVIESRKNEWVVSVLCVGICVVLVIMFGLPLLGNQLETIAD 121

Query: 123 RL----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                   + +N++ IG VL+TQY  P E++  +LL++M+  IVL ++  + 
Sbjct: 122 SANLLDFAEMSNIQKIGYVLFTQYLIPFELAALMLLVAMVAGIVLSVKKEQK 173


>gi|156933130|ref|YP_001437046.1| NADH dehydrogenase subunit J [Cronobacter sakazakii ATCC BAA-894]
 gi|156531384|gb|ABU76210.1| hypothetical protein ESA_00940 [Cronobacter sakazakii ATCC BAA-894]
          Length = 187

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 84/164 (51%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICALVAVLTTARVITHSNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V    ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGDSVVRQEREWLKPQIWIGPGILSAVLLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +GK L+  Y   +E++  +LL  ++ A  L    +
Sbjct: 120 EGNPISAKAVGKDLFQTYVLAVELASMLLLAGLVVAFHLGREEK 163


>gi|238794599|ref|ZP_04638206.1| NADH-quinone oxidoreductase subunit J [Yersinia intermedia ATCC
           29909]
 gi|238726085|gb|EEQ17632.1| NADH-quinone oxidoreductase subunit J [Yersinia intermedia ATCC
           29909]
          Length = 181

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E +++     S +IG     L++ +      S+  + S +
Sbjct: 62  AIMVLFVFVVMMLNLGN--VEQQERDWLKPSLWIGPGLLALVLLSVLIYAISSITD-SGI 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|253729607|ref|YP_003029792.1| NdhG [Bambusa oldhamii]
 gi|255961434|ref|YP_003097629.1| NADH-plastoquinone oxidoreductase subunit 6 [Dendrocalamus
           latiflorus]
 gi|246367117|gb|ACS94728.1| NdhG [Bambusa oldhamii]
 gi|255040311|gb|ACT99971.1| NADH-plastoquinone oxidoreductase subunit 6 [Dendrocalamus
           latiflorus]
          Length = 176

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 10/162 (6%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F  ++    VV + NPIYS FSL    +  +  ++LL + FVA+  L++YVGA+ V  +F
Sbjct: 17  FFLLLGGIGVVLLTNPIYSAFSLGLVLICISLFYILLNSYFVAVAQLLIYVGAINVLIIF 76

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---- 128
            +M   ID       K    +G  F  ++   ++      +  ++   +           
Sbjct: 77  AVMF--IDGSEWSKNKNYWTIGDGFTSLVCITILFSLMTTIPDTSWYGILWTTRSNQIVE 134

Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
               NNV+ IG  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 135 QGLINNVQQIGIHLATDFYLPFELISIILLVSLIGAITMARQ 176


>gi|133900498|gb|ABO41415.1| NADH dehydrogenase subunit 6 [Marathrum cf. oxycarpum Cachoeirc
           9/1996]
          Length = 179

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
             +V   +NP++SV   I  F + +GL LLLG +F AMI  VV++GA+ V FLF++MM  
Sbjct: 1   GLMVARAKNPVHSVLFFILVFCDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----------MVFSAEGELSRLVFK 127
           I I        R    S  IG++    +     F             +      +  V  
Sbjct: 61  IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILEFESIPLLPTQKQTAYLKYTVYAGKVRP 120

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
             N+E +G +LYT Y   L +S  ILL++MIGAIVL +   + +KRQD+ ++   + 
Sbjct: 121 WTNLETLGNLLYTYYFLWLLLSSLILLVAMIGAIVLTMHRTKKVKRQDLFRRNAIDF 177


>gi|91200371|emb|CAJ73417.1| strongly similar to NADH dehydrogenase I chain J [Candidatus
           Kuenenia stuttgartiensis]
          Length = 189

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 93/168 (55%), Gaps = 2/168 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+ S +A++S+ +V+T +N ++++  LI + ++ + +F +LGA F+A + +++Y GA
Sbjct: 8   ITFYIASIVAVVSTLMVITRKNAVHALLYLIVSLLSVSIIFFILGAPFMAALEVIIYAGA 67

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F+F+IMML++  E A    +      + + ++   +++     ++    G+    V
Sbjct: 68  IMVLFIFVIMMLNLGSEAARMENQLLNPKMWIVPVILTLILIIEFIIVLIKINGQEYNSV 127

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 + +G  L+  Y   +E++  +LL  ++GA  L    ++ + R
Sbjct: 128 IISP--KQVGISLFGTYLLGVELAAMLLLAGIVGAYHLGKEKKKILHR 173


>gi|293395178|ref|ZP_06639464.1| NADH dehydrogenase I subunit J [Serratia odorifera DSM 4582]
 gi|291422355|gb|EFE95598.1| NADH dehydrogenase I subunit J [Serratia odorifera DSM 4582]
          Length = 186

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 86/166 (51%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FYL   +AI+++  V++  NP++++  LI + +  + +F  LGA F A + ++VY G
Sbjct: 2   EIAFYLAGLIAILATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V +  ++      +    L + +++      + S   +   +
Sbjct: 62  AIMVLFVFVVMMLNLGNAVQQQEREWLKPSLWIGPGLLSLILLVVLIVAIRSVSDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 120 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 165


>gi|227112319|ref|ZP_03825975.1| NADH dehydrogenase subunit J [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227326158|ref|ZP_03830182.1| NADH dehydrogenase subunit J [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 186

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 91/168 (54%), Gaps = 6/168 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY    +AI+++  V+T  NP++++  ++ + +  AG+F  LGA F   ++++VY G
Sbjct: 2   EFAFYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELS 122
           A++V F+F++MML++   V E +++     S +IG  IL+  L+V   N ++   E  ++
Sbjct: 62  AIMVLFVFVVMMLNLGNSV-EEQERNWLKPSVWIGPSILSLALLVIVVNAILSLKEQGIT 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
               +    + +G  L+  Y   +E++  +LL  ++ A  +    +R 
Sbjct: 121 GTPVEA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165


>gi|323260324|gb|EGA43943.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
          Length = 284

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  L+ + +  +G+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E  ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAIMLAVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  +    R
Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163


>gi|332162381|ref|YP_004298958.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666611|gb|ADZ43255.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860326|emb|CBX70639.1| NADH-quinone oxidoreductase subunit J [Yersinia enterocolitica
           W22703]
          Length = 181

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 87/166 (52%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E +++     S +IG     L++        S+  + S +
Sbjct: 62  AIMVLFVFVVMMLNLGN--VEQQERDWLKPSLWIGPGLLALVLLTVLIYAISSVTD-SGI 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|326569472|gb|EGE19532.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC8]
          Length = 210

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 92/161 (57%), Gaps = 5/161 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +AI +S  VVT  N ++++ S+I + +  AG+F +LGA F  ++ ++VY GA++
Sbjct: 17  FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  +  E +    +L +    +    +++  +  + F   G    +  +
Sbjct: 77  VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133

Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + +  +++G  L+T Y   +E++ F+LL +++ A  L  +
Sbjct: 134 SDTISAKDVGIRLFTGYVLLVEVAAFLLLGALVAAYHLGKK 174


>gi|326577457|gb|EGE27341.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis O35E]
          Length = 210

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 92/161 (57%), Gaps = 5/161 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +AI +S  VVT  N ++++ S+I + +  AG+F +LGA F  ++ ++VY GA++
Sbjct: 17  FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  +  E +    +L +    +    +++  +  + F   G    +  +
Sbjct: 77  VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAMLIGFIGYGTDQSIQLQ 133

Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + +  +++G  L+T Y   +E++ F+LL +++ A  L  +
Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHLGKK 174


>gi|238788646|ref|ZP_04632438.1| NADH-quinone oxidoreductase subunit J [Yersinia frederiksenii ATCC
           33641]
 gi|238723241|gb|EEQ14889.1| NADH-quinone oxidoreductase subunit J [Yersinia frederiksenii ATCC
           33641]
          Length = 181

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E +++     S +IG     L++ +      S+  + S +
Sbjct: 62  AIMVLFVFVVMMLNLGN--VEQQERDWLKPSLWIGPGLLALVLLSVLIYAISSVTD-SGI 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|296040757|gb|ADG85346.1| NADH dehydrogenase subunit 6 [Silene vulgaris]
          Length = 157

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 80/157 (50%), Gaps = 11/157 (7%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA+ V FLF+
Sbjct: 1   LALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL-------- 124
           +MM  I I        R    S  IG I   E+     N  +     + +          
Sbjct: 61  VMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYA 120

Query: 125 --VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
             V    N+E +G +LYT Y     +S  ILL++MIG
Sbjct: 121 GKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIG 157


>gi|229007601|ref|ZP_04165196.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides
           Rock1-4]
 gi|228753739|gb|EEM03182.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides
           Rock1-4]
          Length = 146

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 1/142 (0%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           ++ + +L+F F++ AGL+ LL AEFV +  +++Y GA+ +  +F IM+   D E      
Sbjct: 1   MHMMLALVFTFLSIAGLYFLLLAEFVGVAQILIYSGAITIIMIFGIMLTKHDAENESSFS 60

Query: 89  KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
            R +L  FF  ++   ++  A N + F+       +     N   IG +LY++Y  P E+
Sbjct: 61  FRKWL-IFFAVVVFGGVMYFAVNNIDFTNRSVQGSVPLHEQNTLQIGTLLYSKYVIPFEL 119

Query: 149 SGFILLLSMIGAIVLMLRHRRD 170
           +  ILL++++GAIVL  +  ++
Sbjct: 120 TSVILLVALVGAIVLAKKDEKE 141


>gi|325610517|gb|ADZ36464.1| NADH dehydrogenase subunit 6 [Gordonia lasianthus]
          Length = 176

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +         F+ I++S  V+   NPIYS FSL   FV  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGFVLILASLGVILFPNPIYSAFSLGLVFVCISFFYILSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  +F +M ++         +             S F+ ++   L       +  
Sbjct: 67  VGAINVLIIFAVMFMNGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWA 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +   ++       +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 127 TKSNQILEQDL-ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|269218346|ref|ZP_06162200.1| NADH dehydrogenase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212205|gb|EEZ78545.1| NADH dehydrogenase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 321

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 81/165 (49%), Gaps = 1/165 (0%)

Query: 4   QSLFFYLFSFMAI-ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++ F + + + + ++ F ++  R  +YS   +I   V  A L+  L A F+ ++ + VY
Sbjct: 13  ETILFGVVAVVMVTLTVFGLLVTRRAVYSAVCVIADMVCLAVLYTALEAPFMGVVQIAVY 72

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA+++ FLF++MM+ +D   +     RG      +G L    I   +     +      
Sbjct: 73  TGAILMMFLFVLMMIGVDAADSTYETLRGQRVMAALGALGFAAIAGGAVMDARTPGPVGL 132

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               +  N   I K ++T +A  +E++G +L+++ +GA+ L  R 
Sbjct: 133 AKANEETNPTAIAKSIFTNHALTMELTGALLIVAAVGAMTLTHRQ 177


>gi|123441684|ref|YP_001005668.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088645|emb|CAL11442.1| NADH dehydrogenase I chain J [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606460|emb|CBY27958.1| NADH-ubiquinone oxidoreductase chain J [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 181

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 87/166 (52%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E +++     S +IG     L++        S+  + S +
Sbjct: 62  AIMVLFVFVVMMLNLGN--VEQQERDWLKPSLWIGPGLLALVLLTVLIYAISSVTD-SGI 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|115375207|ref|ZP_01462473.1| NADH-quinone oxidoreductase chain 10 [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818917|ref|YP_003951275.1| NADH dehydrogenase I subunit j [Stigmatella aurantiaca DW4/3-1]
 gi|115367769|gb|EAU66738.1| NADH-quinone oxidoreductase chain 10 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391989|gb|ADO69448.1| NADH dehydrogenase I, subunit J [Stigmatella aurantiaca DW4/3-1]
          Length = 167

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 95/169 (56%), Gaps = 5/169 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++   F  F+F+ + S+ +V+  ++PI+S  +L+  F   AG+++LL A  +A++ ++
Sbjct: 1   MNIEQALFGAFAFLTLFSAAVVIFAKSPIHSAMALVSTFFFLAGIYVLLWAHTLAVMQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           VY GA++V FLF+IM+L++  E   PR    R   G+  +G+ AA  I       + S  
Sbjct: 61  VYAGAIMVLFLFVIMLLNLGEEPPGPRLTLTRIIGGATALGLFAALAITLER---LPSTV 117

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +L         +E IGK +++ + +P E    +LL+SM+G++V+    
Sbjct: 118 ADLGAQAQTFGTLETIGKAIFSSWLFPFEAVSLLLLVSMVGSVVVAKSR 166


>gi|238798412|ref|ZP_04641893.1| NADH-quinone oxidoreductase subunit J [Yersinia mollaretii ATCC
           43969]
 gi|238717726|gb|EEQ09561.1| NADH-quinone oxidoreductase subunit J [Yersinia mollaretii ATCC
           43969]
          Length = 181

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E +++     + +IG     L++ +      S+  + S +
Sbjct: 62  AIMVLFVFVVMMLNLGN--VEQQERDWLKPTLWIGPGLLALVLLSVLIYAISSVTD-SGI 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|322831992|ref|YP_004212019.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rahnella sp.
           Y9602]
 gi|321167193|gb|ADW72892.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rahnella sp.
           Y9602]
          Length = 186

 Score =  114 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVLATLRVITHTNPVHALLYLIVSLLAIAAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     + R            +L+  L+V     ++   +  +   
Sbjct: 62  AIMVLFVFVVMMLNLGNVQEQERAWLKPATWIGPSVLSVILLVVMIMSILGLHDHGIKGD 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +      + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 122 MVDA---KAVGIALFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|296112940|ref|YP_003626878.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis RH4]
 gi|295920634|gb|ADG60985.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis RH4]
 gi|326561164|gb|EGE11529.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 7169]
 gi|326562848|gb|EGE13136.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis
           103P14B1]
 gi|326567648|gb|EGE17756.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis
           12P80B1]
 gi|326574015|gb|EGE23964.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis CO72]
 gi|326577017|gb|EGE26912.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis
           101P30B1]
          Length = 210

 Score =  114 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 92/161 (57%), Gaps = 5/161 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +AI +S  VVT  N ++++ S+I + +  AG+F +LGA F  ++ ++VY GA++
Sbjct: 17  FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  +  E +    +L +    +    +++  +  + F   G    +  +
Sbjct: 77  VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133

Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + +  +++G  L+T Y   +E++ F+LL +++ A  L  +
Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHLGKK 174


>gi|108802695|ref|YP_636352.1| NADH dehydrogenase subunit 6 [Eucalyptus globulus subsp. globulus]
 gi|122219159|sp|Q49KU5|NU6C_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|60460861|gb|AAX21081.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus globulus
           subsp. globulus]
          Length = 176

 Score =  114 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ S  VV + NPIYS FSL    V  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ +  LF +M ++      +       +G     ++   ++V     ++ ++   + 
Sbjct: 67  VGAINILILFAVMFMNGSEYYKDLNL--WTVGDGITSLVCTSILVSLMTTILDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                          N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 125 WTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|326561575|gb|EGE11916.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis
           46P47B1]
 gi|326567947|gb|EGE18044.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC1]
          Length = 210

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 92/161 (57%), Gaps = 5/161 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY+ S +AI +S  VVT  N ++++ S+I + +  AG+F +LGA F  ++ ++VY GA++
Sbjct: 17  FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++  +  E +    +L +    +    +++  +  + F   G    +  +
Sbjct: 77  VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133

Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + +  +++G  L+T Y   +E++ F+LL +++ A  L  +
Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHLGKK 174


>gi|313681403|ref|YP_004059141.1| NADH dehydrogenase subunit j [Sulfuricurvum kujiense DSM 16994]
 gi|313154263|gb|ADR32941.1| NADH dehydrogenase subunit J [Sulfuricurvum kujiense DSM 16994]
          Length = 195

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 89/166 (53%), Gaps = 3/166 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FYLF+ + I+   + V     +Y++ ++    +  +  F +LGA+F+  I ++VY
Sbjct: 2   FEAIAFYLFAALTIVMFTITVMTSQALYAITAMAAGMIFISAFFFILGADFLGAIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-L 121
            GAV+  + F +M  D   +V E R     +  F +G+LAA ++V      + S   + L
Sbjct: 62  TGAVMALYAFGMMFFDTTRDVVEKRTNPQIV--FVLGVLAAVMVVAIFVAPIVSNNIQAL 119

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +     N + +G VL+T+Y  P E++  +LL++MIG I+L  + 
Sbjct: 120 YPIQENIGNSQAVGMVLFTKYLVPFEVAAVMLLVAMIGGIILAGKK 165


>gi|238784992|ref|ZP_04628990.1| NADH-quinone oxidoreductase subunit J [Yersinia bercovieri ATCC
           43970]
 gi|238714108|gb|EEQ06122.1| NADH-quinone oxidoreductase subunit J [Yersinia bercovieri ATCC
           43970]
          Length = 181

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E +++     + +IG     L++ +      S+  + S +
Sbjct: 62  AIMVLFVFVVMMLNLGN--VEQQERDWLKPTLWIGPGLLALVLLSVLIYAISSVTD-SGI 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|200004020|ref|YP_002221355.1| NADH dehydrogenase subunit 6 [Blastocystis sp. DMP/02-328]
 gi|156617367|gb|ABU87587.1| NADH dehydrogenase subunit 6 [Blastocystis sp. BT-1]
 gi|156617370|gb|ABU87589.1| NADH dehydrogenase subunit 6 [Blastocystis sp. DMP/02-328]
          Length = 201

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 105/200 (52%), Gaps = 11/200 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + FF  F+ + IIS F+ ++V N +Y+V  LI AF +   +  LL  +++A++ +++Y
Sbjct: 1   MSNFFFNFFASILIISVFMTISVNNAVYAVLFLILAFFSTMCILFLLNIDYLALLFILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF------- 115
           VGA+ + FLF++MML I I      K   F+      ++   ++       +F       
Sbjct: 61  VGAITILFLFVVMMLKIKINDKNTTKFLSFINIIISCLIIYNVLCNVQILNIFLPTTTTA 120

Query: 116 ---SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                       ++  +N++ +G+VL+T Y +   ++GF+LL+ MI AI+L     R I+
Sbjct: 121 LETLTYQNWFSKLYYVDNIKMLGQVLFTTYYFYFILAGFVLLVGMISAILLSKESNRTIR 180

Query: 173 R-QDISKQLESNPDNSIVMV 191
           R Q + +QL     N++ +V
Sbjct: 181 RYQLVYQQLSREVSNAVFLV 200


>gi|116619260|ref|YP_821416.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116222422|gb|ABJ81131.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 164

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F  F+ +A++ +  VV   +PI S  SL+    + A L+LLLGAEF+A   ++VY
Sbjct: 1   MDVILFLTFAVIAVVCAINVVVQTHPISSALSLVGVMGSLAILYLLLGAEFIAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IM+L+   E  + R          I  L            +F +   + 
Sbjct: 61  AGAIMVLFVFVIMLLNAGAETTKGRSYLIPGAPLLIVFLGLVAFFVQR---IFPSATMVR 117

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              F G    +IG  L+T Y  P E++  ++L++++GAIVL  + 
Sbjct: 118 FGGFTGGGPRDIGNALFTTYLLPFEVTSLLILIAIVGAIVLARKE 162


>gi|15606522|ref|NP_213902.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5]
 gi|2983740|gb|AAC07301.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5]
          Length = 162

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L F++     IIS+   V  +NPI+ +   + + +  AGLFL LGAE +A + L++Y
Sbjct: 1   MEWLIFFILGAWLIISALGTVLAKNPIHVMLFFLSSLLAMAGLFLSLGAELLAGLQLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
             A++VF++  I  +  +      R +  +            ++    ++MV   +    
Sbjct: 61  AVAIVVFYVLAITTIPWE---KIKRFEGVYKTEILTASPILLVLFLVMSYMVIKGKFAEP 117

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             V K +NVE +G+ L+T Y +P E++  ILL++M+GAI+L  + 
Sbjct: 118 SGVVK-DNVEAVGRTLFTSYLFPFEVASVILLVAMVGAILLARKE 161


>gi|290489844|gb|ADD31329.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Aucuba
           japonica]
          Length = 175

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 10/171 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ +  VV + NPIYS FSL    V  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLILGALGVVLLPNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M ++      +       +G     ++   + V     +  ++   + 
Sbjct: 67  VGAINVLIIFAVMFMNGSEYYKDFHL--WTIGDGVTSMVCTSIFVSLMTTIPDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                         +N + IG  L T +  P E+   ILL+++IGAI +  
Sbjct: 125 WTTRSNQIVEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVAR 175


>gi|121720667|ref|YP_001001587.1| NADH-plastoquinone oxidoreductase subunit 6 [Nuphar advena]
 gi|221272334|sp|A1XG08|NU6C_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|84682258|gb|ABC60512.1| NADH-plastoquinone oxidoreductase subunit 6 [Nuphar advena]
          Length = 177

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 10/173 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +         I+    VV + NPIYS FS     V  +  ++   + FVA   L++Y
Sbjct: 7   IHDILLVSLGSGLIVGGLGVVLLTNPIYSAFSSGLVLVCISLFYIPSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF +M ++              +G  F  ++   +       +  ++   + 
Sbjct: 67  VGAINVLILFAVMFMNGSEYYNSFHF--WTIGDGFTSVVCTSIFFSLIATIPNTSWYGII 124

Query: 123 RLVFK--------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                         +NV+ IG  L T +  P E+   ILL+S++GAI +  R 
Sbjct: 125 WTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFELISIILLVSLVGAIAMARRE 177


>gi|332883535|gb|EGK03818.1| hypothetical protein HMPREF9456_01885 [Dysgonomonas mossii DSM
           22836]
          Length = 167

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 90/167 (53%), Gaps = 1/167 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++ FY+ + + + +  L V  +NPI+S   +I  F + +G FLLL A F+++I +VVY
Sbjct: 1   MITIIFYILATITLGTGLLTVLSKNPIHSAVYMIICFFSISGHFLLLNALFLSVINIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V  LF +M++++  E  EP+KK     +  I      +++ A+            
Sbjct: 61  AGAIMVLLLFTLMLMNL-SESHEPKKKVISRVAATISSCLMGIVLLAALLKATPVIETYK 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                  +V  IG+VL  +Y  P E +  +L+ +MIGA+++  + ++
Sbjct: 120 AEGLDYQSVNIIGQVLLDEYLVPFEFAAILLITAMIGAVLISKKEKK 166


>gi|296040755|gb|ADG85345.1| NADH dehydrogenase subunit 6 [Silene paradoxa]
          Length = 157

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 11/157 (7%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A++S  +VV  +NP++SV   I  F N +GL LLLG +F AMI LVVY+GA+ V FLF+
Sbjct: 1   LALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL-------- 124
           +MM  I I        R    S  IG++   E+     N  +       +          
Sbjct: 61  VMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVYA 120

Query: 125 --VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
             V    N+E +G +LYT Y     +S  ILL++MIG
Sbjct: 121 GKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIG 157


>gi|238763934|ref|ZP_04624891.1| NADH-quinone oxidoreductase subunit J [Yersinia kristensenii ATCC
           33638]
 gi|238697902|gb|EEP90662.1| NADH-quinone oxidoreductase subunit J [Yersinia kristensenii ATCC
           33638]
          Length = 183

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 86/166 (51%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     E +++     S +IG     L++ +      S+      +
Sbjct: 62  AIMVLFVFVVMMLNLGN--VEQQERDWLKPSLWIGPGLLALVLLSVLIYAISSLTH-QGI 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 119 TGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|294637171|ref|ZP_06715479.1| NADH-quinone oxidoreductase, J subunit [Edwardsiella tarda ATCC
           23685]
 gi|291089635|gb|EFE22196.1| NADH-quinone oxidoreductase, J subunit [Edwardsiella tarda ATCC
           23685]
          Length = 190

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   EFAFYVAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  +     G +    +   L++    + + + +G    +
Sbjct: 62  AIMVLFVFVVMMLNLGNSVVEQERAWLRPGVWIGPSVLTLLLLLVVLYAISTLQG--GAI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E+   +LL  ++ A  +   H + 
Sbjct: 120 SGQVVDAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHHQG 165


>gi|157371537|ref|YP_001479526.1| NADH dehydrogenase subunit J [Serratia proteamaculans 568]
 gi|157323301|gb|ABV42398.1| NADH dehydrogenase (quinone) [Serratia proteamaculans 568]
          Length = 186

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 88/167 (52%), Gaps = 4/167 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FYL  F+A+I++  V++  NP++++  LI + +  + +F  LGA F A + ++VY G
Sbjct: 2   EIAFYLAGFIAVIATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSR 123
           A++V F+F++MML++   V +  +       +   GIL+  L+V     +   ++  +S 
Sbjct: 62  AIMVLFVFVVMMLNLGNAVQQQERDWLKPSVWIGPGILSLALLVVLIVAIRSVSDQGISG 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +      + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 122 EMVDA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 165


>gi|255691143|ref|ZP_05414818.1| NADH dehydrogenase I, subunit 6 [Bacteroides finegoldii DSM 17565]
 gi|260623236|gb|EEX46107.1| NADH dehydrogenase I, subunit 6 [Bacteroides finegoldii DSM 17565]
          Length = 170

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 7/170 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V ++F I++   + + AE  K+  FL   F  I    +I+  +    F    + 
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAERLKRSRFLAGLFTMIAGLAIILFITLKHNFM---QT 120

Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
           + L  +  N+  IG  L +     Y  P E    +LL  +IG I++  + 
Sbjct: 121 ANLAPQEINIHTIGHALLSSDKYGYVLPFEAVSILLLACIIGGIMIARKR 170


>gi|270262806|ref|ZP_06191077.1| NADH dehydrogenase subunit J [Serratia odorifera 4Rx13]
 gi|270043490|gb|EFA16583.1| NADH dehydrogenase subunit J [Serratia odorifera 4Rx13]
          Length = 186

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FYL   +AI+++  V++  NP++++  LI + +  + +F  LGA F A + ++VY G
Sbjct: 2   EIAFYLAGLIAIVATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V +  +       +    L +  ++      + S   +   +
Sbjct: 62  AIMVLFVFVVMMLNLGNAVQQQERDWLKPSVWIGPGLMSLALLVVLIVAIRSLSDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 120 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 165


>gi|206942067|gb|ACI22630.1| NADH-plastoquinone oxidoreductase subunit 6 [Aneura pinguis]
          Length = 192

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 11/176 (6%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
                 F       I+ S  VV + N ++S F L F     A L+L L ++F+A   +++
Sbjct: 6   SFHETVFIFPESGPILGSLGVVPLTNIVHSAFLLGFVSACTAPLYLSLDSDFIAAAQVLI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ V  +F +M++    +  E       +G     +    + + + N +  ++  E+
Sbjct: 66  YVGAINVLLIFAVMLI---KKGTEDYSAYKTVGDGITLVPCIGIFLLSDNTISNTSWSEV 122

Query: 122 --------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                      +   +N+  IG  L T++  P E+   ILL++++GAI L    + 
Sbjct: 123 YLIARSNDDEGIVPMDNIRRIGLELVTEFFIPFELMSLILLIALVGAITLARARKT 178


>gi|162456308|ref|YP_001618675.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So
           ce 56']
 gi|161166890|emb|CAN98195.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So
           ce 56']
          Length = 171

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 5/165 (3%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            + +L F   + + + S+ LV   RN I+S  +L+  F+  AGL++ L A+F+A   ++V
Sbjct: 3   SLSALVFLGLAALTLGSAGLVAFSRNIIHSALALLGTFLGIAGLYVSLSADFIAATQVLV 62

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVG  +V  LF +M+     E+     + G   +F  G++ A L++            E 
Sbjct: 63  YVGGTLVLILFAVMLTSRIAEMKISNPRGGPAVAF--GLVTAVLLLLGRVATQTPWPAEA 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
              +        +G     +Y  P E+   +LL +MIGA+VL  R
Sbjct: 121 KPAMPS---TAKLGHAFLGEYLLPFELGSVVLLAAMIGAVVLARR 162


>gi|327403953|ref|YP_004344791.1| NADH dehydrogenase subunit J [Fluviicola taffensis DSM 16823]
 gi|327319461|gb|AEA43953.1| NADH dehydrogenase subunit J [Fluviicola taffensis DSM 16823]
          Length = 170

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY+   + I ++ +VV  ++P+ SV  L+  F   +  ++L+ A+F+A++ ++VY GA+
Sbjct: 6   IFYILGGLTIGTALMVVLSKHPVRSVLYLVLTFFLISANYVLMNAQFIAIVNIIVYAGAI 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V FLF++M+L+++ E          +G+   G     ++V A    + +    +     
Sbjct: 66  MVLFLFVLMLLNLNKENEPKHSPMMTIGAAVAGGSLFLVVVAAMRDAILATP-MIDANSE 124

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
           K   VEN+G++L+T+Y  P E+S  + L +M+GA++L  + ++ I
Sbjct: 125 KVGLVENLGQILFTKYVLPFEVSSVLFLAAMVGAVLLAKKEKQTI 169


>gi|22125533|ref|NP_668956.1| NADH dehydrogenase subunit J [Yersinia pestis KIM 10]
 gi|45442147|ref|NP_993686.1| NADH dehydrogenase subunit J [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596898|ref|YP_071089.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis IP 32953]
 gi|108808034|ref|YP_651950.1| NADH dehydrogenase subunit J [Yersinia pestis Antiqua]
 gi|108812304|ref|YP_648071.1| NADH dehydrogenase subunit J [Yersinia pestis Nepal516]
 gi|145599237|ref|YP_001163313.1| NADH dehydrogenase subunit J [Yersinia pestis Pestoides F]
 gi|149365547|ref|ZP_01887582.1| NADH dehydrogenase I chain J [Yersinia pestis CA88-4125]
 gi|153949644|ref|YP_001400440.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis IP 31758]
 gi|162418552|ref|YP_001606297.1| NADH dehydrogenase subunit J [Yersinia pestis Angola]
 gi|165925425|ref|ZP_02221257.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937633|ref|ZP_02226195.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008411|ref|ZP_02229309.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213848|ref|ZP_02239883.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399044|ref|ZP_02304568.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422318|ref|ZP_02314071.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424390|ref|ZP_02316143.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023809|ref|YP_001720314.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis YPIII]
 gi|186895979|ref|YP_001873091.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis PB1/+]
 gi|218929633|ref|YP_002347508.1| NADH dehydrogenase subunit J [Yersinia pestis CO92]
 gi|229838089|ref|ZP_04458248.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895288|ref|ZP_04510462.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis
           Pestoides A]
 gi|229898649|ref|ZP_04513794.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902648|ref|ZP_04517765.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis
           Nepal516]
 gi|270490171|ref|ZP_06207245.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia
           pestis KIM D27]
 gi|294504361|ref|YP_003568423.1| NADH dehydrogenase subunit J [Yersinia pestis Z176003]
 gi|21958433|gb|AAM85207.1|AE013767_4 NADH dehydrogenase I chain J [Yersinia pestis KIM 10]
 gi|45437011|gb|AAS62563.1| NADH dehydrogenase I chain J [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590180|emb|CAH21817.1| NADH dehydrogenase I chain J [Yersinia pseudotuberculosis IP 32953]
 gi|108775952|gb|ABG18471.1| NADH dehydrogenase I chain J [Yersinia pestis Nepal516]
 gi|108779947|gb|ABG14005.1| NADH dehydrogenase I chain J [Yersinia pestis Antiqua]
 gi|115348244|emb|CAL21172.1| NADH dehydrogenase I chain J [Yersinia pestis CO92]
 gi|145210933|gb|ABP40340.1| NADH dehydrogenase I chain J [Yersinia pestis Pestoides F]
 gi|149291960|gb|EDM42034.1| NADH dehydrogenase I chain J [Yersinia pestis CA88-4125]
 gi|152961139|gb|ABS48600.1| NADH-quinone oxidoreductase, J subunit [Yersinia pseudotuberculosis
           IP 31758]
 gi|162351367|gb|ABX85315.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis Angola]
 gi|165914383|gb|EDR32998.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922534|gb|EDR39685.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992793|gb|EDR45094.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205022|gb|EDR49502.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958824|gb|EDR55845.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051548|gb|EDR62956.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056272|gb|EDR66041.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750343|gb|ACA67861.1| NADH dehydrogenase (quinone) [Yersinia pseudotuberculosis YPIII]
 gi|186699005|gb|ACC89634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229680095|gb|EEO76194.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis
           Nepal516]
 gi|229688197|gb|EEO80268.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694455|gb|EEO84502.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701774|gb|EEO89799.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis
           Pestoides A]
 gi|262362650|gb|ACY59371.1| NADH dehydrogenase subunit J [Yersinia pestis D106004]
 gi|262366279|gb|ACY62836.1| NADH dehydrogenase subunit J [Yersinia pestis D182038]
 gi|270338675|gb|EFA49452.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia
           pestis KIM D27]
 gi|294354820|gb|ADE65161.1| NADH dehydrogenase subunit J [Yersinia pestis Z176003]
 gi|320014615|gb|ADV98186.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 181

 Score =  113 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     + R           G+LA  L+      +   ++  +S  
Sbjct: 62  AIMVLFVFVVMMLNLGNVEQQERAWLKPSMWIGPGLLALVLLSVLIYAISSVSDQGISGE 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +      + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 122 MVDA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|153807447|ref|ZP_01960115.1| hypothetical protein BACCAC_01727 [Bacteroides caccae ATCC 43185]
 gi|149129809|gb|EDM21021.1| hypothetical protein BACCAC_01727 [Bacteroides caccae ATCC 43185]
          Length = 170

 Score =  113 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 7/170 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V ++F I++   + + AE  K+  F    F  +  A +I+  +   +     + 
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFFAGLFTMVAGAAIILFIT---LKHNFLQT 120

Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
           + L  +  N+ +IG  L +     Y  P E    +LL  +IG I++  + 
Sbjct: 121 NNLAPQEINIHSIGHALLSSDKYGYILPFEAVSILLLACIIGGIMIARKR 170


>gi|237751589|ref|ZP_04582069.1| NADH oxidoreductase I [Helicobacter bilis ATCC 43879]
 gi|229372955|gb|EEO23346.1| NADH oxidoreductase I [Helicobacter bilis ATCC 43879]
          Length = 203

 Score =  113 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY+F  + + +  +VV   N +Y++ +L F  +  +GLF LL A+F+ ++ ++VY
Sbjct: 2   FEAIAFYVFGALCLCAFLIVVMTNNILYALTALAFGMILVSGLFFLLNADFLGVVQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+V + F +M+ D+  EV E  + +  +           LIV            + +
Sbjct: 62  TGAVVVMYAFGMMLFDVSKEVKERFQNQFMVWLLVSIFAIGLLIVV--------GNTQTT 113

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                 N+   +  +L+  Y    E +  +LL++MI  I
Sbjct: 114 IPYQNDNSTNALAHLLFKDYLVCFEAAAIMLLMAMIAGI 152


>gi|283795021|ref|YP_003359412.1| NADH dehydrogenase subunit 6 [Olea europaea]
 gi|330850796|ref|YP_004376474.1| NADH dehydrogenase subunit 6 [Olea europaea subsp. europaea]
 gi|281428740|gb|ADA69979.1| NADH dehydrogenase subunit 6 [Olea europaea]
 gi|291059307|gb|ADD72143.1| NADH-plastoquinone oxidoreductase subunit 6 [Olea europaea]
 gi|328795486|emb|CBR30368.1| NADH dehydrogenase subunit 6 [Olea europaea subsp. europaea]
          Length = 176

 Score =  113 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ S  VV + NPIYS FSL       +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLILGSLGVVLLPNPIYSAFSLGLVLFCISLFYILSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ +  +F +M +       D  +             S FI ++           +  
Sbjct: 67  VGAINILIIFAVMFMSGSEYYKDFHLWTVGDGVTSIVCTSLFISLITTIPDTSWYGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +   ++       +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 127 TKSNQIIEQDL-ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAIARQ 176


>gi|189346379|ref|YP_001942908.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium
           limicola DSM 245]
 gi|189340526|gb|ACD89929.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium
           limicola DSM 245]
          Length = 173

 Score =  113 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 3/168 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY+F+ + + S+  VV  +N IYS F+L+F F   A L++ L A+F+A+  +VVYVG +
Sbjct: 9   IFYIFAAITVFSAAFVVFSKNVIYSAFALLFTFFGVAALYVFLSADFIAVTQIVVYVGGI 68

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V  LF +M  +    + +   K   L      +L    +         +   + S +  
Sbjct: 69  LVLLLFGVMFTN---SIMQTDLKSDVLHVVPGTLLLLATVGGLLFTFYTTGTWKPSDVQL 125

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            G+ VE IG    ++Y  P E++  +LL  +IGA  L    +     Q
Sbjct: 126 HGSVVERIGIETMSRYVLPFEMASILLLAVLIGAAFLARYDKVRNNEQ 173


>gi|260598697|ref|YP_003211268.1| NADH:ubiquinone oxidoreductase subunit J [Cronobacter turicensis
           z3032]
 gi|260217874|emb|CBA32418.1| NADH-quinone oxidoreductase subunit J [Cronobacter turicensis
           z3032]
          Length = 187

 Score =  113 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  AG+F  LGA F   + ++VY G
Sbjct: 2   EFAFYICALVAVLTTARVITHSNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V    ++      +    + + +++    + +     +   +
Sbjct: 62  AIMVLFVFVVMMLNLGDSVVRQEREWLKPQIWIGPGILSAVLLVVIVYAILGVNDQ--GI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + + +G  L+  Y   +E++  +LL  ++ A  L    +
Sbjct: 120 EGNPISAKAVGTDLFKTYVLAVELASMLLLAGLVVAFHLGREEK 163


>gi|251799768|ref|YP_003014499.1| NADH dehydrogenase subunit J [Paenibacillus sp. JDR-2]
 gi|247547394|gb|ACT04413.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus
           sp. JDR-2]
          Length = 171

 Score =  113 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +   F++FS + II + L+V+++  ++ V S+   F+  AG+F+LL AEFVA + +++Y 
Sbjct: 9   EFATFFIFSAIMIIGAVLMVSLQKVVHMVISMAAVFLGLAGMFVLLDAEFVAFVQVLIYA 68

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV +  +F IMM +   + A+P K      +    +    ++  A     F    +   
Sbjct: 69  GAVSILMIFGIMMTNHQNKQADPVKPLHETLAAVGALCLFGILFYAIRTTDFP---DAQP 125

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L    +N  +IG++LYT Y  P E+   +L ++ IGAI +  +
Sbjct: 126 LQAVEDNTSSIGQLLYTGYVVPFELLSVLLTVAFIGAIAIAKK 168


>gi|193212952|ref|YP_001998905.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobaculum
           parvum NCIB 8327]
 gi|193086429|gb|ACF11705.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobaculum
           parvum NCIB 8327]
          Length = 173

 Score =  113 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 93/170 (54%), Gaps = 5/170 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+F+ + ++S+  VV  +N IYS FSL+F F   A L++ L A+F+A+  +VVYVG 
Sbjct: 8   IIFYIFAAVTVVSAAFVVFSKNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVGG 67

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V  LF +M  +  +        +  + +   G++   L++    F  ++  G +  LV
Sbjct: 68  ILVLLLFGVMFTNTIMSTE----LKADVMNMVPGVILLFLMIAGMLFTFYTGGGWMPGLV 123

Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
             +G+ VE+IG    ++Y  P E+   +LL++++GA  L    +   K Q
Sbjct: 124 QLQGSVVESIGMETMSRYMLPFEMVSIVLLVALLGAAYLARYDKAQNKEQ 173


>gi|115391956|ref|YP_778544.1| NADH dehydrogenase subunit 6 [Jasminum nudiflorum]
 gi|122164926|sp|Q06R77|NU6C_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|110456277|gb|ABG74682.1| NADH degydrogenase subunit 6 [Jasminum nudiflorum]
          Length = 176

 Score =  113 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 16/175 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ S  VV + NPIYS FSL       +  ++LL + FVA   L++Y
Sbjct: 7   IHDFLLVFLELGLILGSLGVVFLPNPIYSAFSLGLVLFCISLFYILLNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M ++          K  +L +   G+ +        + +    +    
Sbjct: 67  VGAINVLIIFAVMFMN-----GSEYYKDFYLWTVGDGVTSMVCTSLFISLITTIPDTSWY 121

Query: 123 RLVFKG-----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +++             +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 122 GIIWTTKSNQIIEKDLISNSQQIGIHLVTDFFLPFELISIILLVALIGAIAIARQ 176


>gi|288819088|ref|YP_003433436.1| NADH dehydrogenase I chain J [Hydrogenobacter thermophilus TK-6]
 gi|288788488|dbj|BAI70235.1| NADH dehydrogenase I chain J [Hydrogenobacter thermophilus TK-6]
 gi|308752671|gb|ADO46154.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobacter thermophilus TK-6]
          Length = 163

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +   L S   ++S+   + ++NP++ + + +   +  AG+FL + AE +A + L++Y
Sbjct: 1   MEWVITALLSLWLVLSALCTIFMKNPVHVILAFLSVILAMAGIFLQMKAELLAGLQLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
             A++VF++ +I ++  +      R +  +    F G     +     ++MV   +    
Sbjct: 61  AVAIVVFYVLVITVIPWE---KVKRFEGIYKQELFWGAPFFLISFLLMSYMVLKGKFAQP 117

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             V  G+NV ++GK L+T Y +P E++  ILL++MIGAI+L  + 
Sbjct: 118 LNVISGDNVRDVGKNLFTSYLFPFEVASVILLVAMIGAILLGRKE 162


>gi|299138533|ref|ZP_07031712.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidobacterium sp. MP5ACTX8]
 gi|298599779|gb|EFI55938.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidobacterium sp. MP5ACTX8]
          Length = 168

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 10/171 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ+  F +F  +A++ +  ++  R+PI S  SLI   ++ A L+  LGAEF+A   ++VY
Sbjct: 1   MQTALFIIFGLLAVLGALNLLFQRHPINSALSLIVVMMSLAVLYWSLGAEFLAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IM+L+      E  +  G   ++  GI  A  I C   F+  S + +L 
Sbjct: 61  SGAIMVLFVFVIMLLN----AGEEERTHGSQIAYIAGIPGAAAIFCLLTFVFLSEKKQLG 116

Query: 123 RLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                G      +N+  I   L+T    P E++  ++L++++GA+VL  + 
Sbjct: 117 TTQLGGYLTSAVSNITEISHTLFTSLLLPFEVTSILILVAILGAVVLARKE 167


>gi|154175162|ref|YP_001407453.1| NADH dehydrogenase subunit J [Campylobacter curvus 525.92]
 gi|112803258|gb|EAU00602.1| transcriptional regulator, LuxR family [Campylobacter curvus
           525.92]
          Length = 177

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 86/164 (52%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ FYLFS +++    + V  +N ++++ +L    +    LF LLGAEF+ ++ ++VY 
Sbjct: 3   EAIAFYLFSALSLGCFGVSVFSKNALHAMSALAGGMIFICALFFLLGAEFLGVVQIIVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+V + F +M  DI  +  E          + + +  A L+V   +  V        +
Sbjct: 63  GAVMVLYAFSMMFFDISRDANESYSLASKRLIYTLSVFIALLLVIVFSSPVIGQNLAAQQ 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              +  N+E IG +L+ +Y    E++  +LL++M+  IVL+ + 
Sbjct: 123 SAQELGNIELIGLMLFGKYLIAFELTAIMLLVAMVAGIVLVHKK 166


>gi|156573609|gb|ABU85140.1| NADH-plastoquinone oxidoreductase subunit 6 [Yucca schidigera]
          Length = 176

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +F        I+    VV   NPIYS FSL    V  +  ++   + FVA   L++Y
Sbjct: 7   IHDIFVVFLGSFLILGGLGVVLFTNPIYSAFSLGLVLVCISLFYIPSNSYFVAAPQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  +F IM ++      +                S    ++   L +     +  
Sbjct: 67  VGAINVLIIFAIMFMNGSEYSNDSYLWTVGDGITSLVCTSILFSLITTILDMSWYGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           + + ++       +NV+ IG  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 127 TRKNQIIEQDL-ISNVQQIGIHLSTDFYLPFELISIILLVSLIGAITMAHQ 176


>gi|290489874|gb|ADD31344.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Heuchera
           sanguinea]
          Length = 176

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+    VV + NPIYS FSL    V  +  ++   + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSALILGGLGVVLLTNPIYSAFSLGLVLVCISLFYISSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M ++      +       +G     ++   + V     +  ++   + 
Sbjct: 67  VGAINVLIIFAVMFMNGSGSYKDFTL--WTVGDGVTSVVCTSIFVSLITIIPDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 125 WTTRSNQIIEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAITVARQ 176


>gi|304407743|ref|ZP_07389394.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus
           curdlanolyticus YK9]
 gi|304343226|gb|EFM09069.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus
           curdlanolyticus YK9]
          Length = 173

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F++ S + I  S L+V+    ++ V SL   F+   G+F++L AEF+A + +++Y 
Sbjct: 9   EFVAFFVLSVLMITGSVLMVSFTKVVHMVLSLAAVFLGVGGMFIMLDAEFLAFVQVLIYA 68

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV +  +F IMM +      E  K      +    I    L+        F+ +   + 
Sbjct: 69  GAVSILMIFGIMMTNHQEASGESVKPLRETLAAVAAIALFGLLFFVIQAADFT-DTSGAA 127

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                +N   IG++L+  Y  P E+   +L ++ IGAIVL  + 
Sbjct: 128 PPPAADNTLAIGELLFHGYIVPFELVSVLLTVAFIGAIVLARKE 171


>gi|296274185|ref|YP_003656816.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098359|gb|ADG94309.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcobacter
           nitrofigilis DSM 7299]
          Length = 171

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 1/168 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F   SFMAI     ++  + P+Y+   L+ + ++ +GLF LL A F+ M+ ++VY
Sbjct: 1   MTDILFIGLSFMAIAGGLTMLIHKQPMYAALGLLISILSVSGLFALLSATFLFMVQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++   LFI+M L+ID E   P++ +         I+   L +     +    + ++S
Sbjct: 61  AGAIMTLLLFILMFLNID-EHDLPKEPKKVRNIIIGAIVMLPLNIVILTAVSALPKKDMS 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +      ++ IG +LY  +    E+   +LL++++GAIVL  R +  
Sbjct: 120 IIETNFGGIKEIGMLLYQNWLISFELISILLLVALVGAIVLAKRKKTR 167


>gi|90200379|ref|NP_777467.2| NADH dehydrogenase subunit 6 [Anthoceros formosae]
          Length = 197

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            +FF       I  S  VV + N +YS F L   FV  + L+LLL A+FVA   +++YVG
Sbjct: 9   EVFFVFIELGLIFGSLGVVFLTNIVYSAFLLGLVFVCISFLYLLLDADFVATAQILIYVG 68

Query: 65  AVIVFFLFIIMMLDIDIEVA-------EPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           AV +  +F +M+++    +                  S F  +++  L +  SN    + 
Sbjct: 69  AVNILIVFAVMLINKPQSLQFLPSWTVGDTITLILCTSLFFLLISMILSISWSNIFSIAQ 128

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             ++   V K ++V+ IG  L   +  P E+   +LL+++IGAI +  R ++
Sbjct: 129 SNKIGEQVLK-SSVQGIGSSLLIDFLLPFELLSIVLLVALIGAITIARREKK 179


>gi|197131420|gb|ACH47228.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium
           cotyledonis]
          Length = 176

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ S  VV + NPIYS FSL F F+  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEP--RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VGA+ V  +F +M ++      E         L S    IL   LI    N   +     
Sbjct: 67  VGAINVLIIFAVMFMNGSEYYKESPLWTVGDGLTSLISTILFFSLITTILNTSWYGIIWT 126

Query: 121 LSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                       +N + +G  L T +  P E+   ILL++++GAI +  +
Sbjct: 127 TRSNQIIEKDLISNSQQLGIHLSTDFFLPFELISIILLVALLGAISVARQ 176


>gi|325610491|gb|ADZ36442.1| NADH dehydrogenase subunit 6 [Polyspora chrysandra]
          Length = 176

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
            S  V+   NPI S FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M +
Sbjct: 22  GSLGVILFPNPISSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFM 81

Query: 78  D-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           +         +             S F+ +++  L       +  +   ++       +N
Sbjct: 82  NDSEYYKDFHLWTVGDGITSMVCTSIFVSLISTILDTSWYGIIWATKSNQILEQDL-ISN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|269977607|ref|ZP_06184574.1| NADH dehydrogenase subunit j [Mobiluncus mulieris 28-1]
 gi|307701312|ref|ZP_07638333.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mobiluncus
           mulieris FB024-16]
 gi|269934210|gb|EEZ90777.1| NADH dehydrogenase subunit j [Mobiluncus mulieris 28-1]
 gi|307613473|gb|EFN92721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mobiluncus
           mulieris FB024-16]
          Length = 352

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 1/162 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++F  + S  A++    V   R  +++   ++   ++ AG++  LGAEF+  + +VVY 
Sbjct: 21  QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++  LF+IM++ +   +  PR+         + +  A  I+        +    +  
Sbjct: 81  GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                +N   I   +  QY +P+E+   +L+++ +GA+ L  
Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTLTH 181


>gi|300775182|ref|ZP_07085044.1| NADH-quinone oxidoreductase subunit J [Chryseobacterium gleum ATCC
           35910]
 gi|300505922|gb|EFK37058.1| NADH-quinone oxidoreductase subunit J [Chryseobacterium gleum ATCC
           35910]
          Length = 165

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 97/165 (58%), Gaps = 3/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F+L +F+A+ S+   V  +NP+Y++ SLI    + AG+++LL A+F+A+I ++VY
Sbjct: 1   MDQFLFFLVAFLAVASAVYFVFAKNPLYAILSLIVTMFSIAGMYILLNAQFLAIIQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++V FL+I+MML+++  + ++      F+G F  G+L   ++       +      +
Sbjct: 61  AGAIMVLFLYILMMLNLNKADESKKNNTLKFVGVFTAGLLLIGVLGVFRG--IQDNHIVV 118

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +       +N+G++L+ +Y  P E++  ++L  ++GA+++  +
Sbjct: 119 ENVDRGVGLTKNLGRLLFNEYVLPFELASILILAGIVGAVLIGKK 163


>gi|48474399|sp|Q85CT7|NU6C_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|27807929|dbj|BAC55404.1| NADH dehydrogenase ND6 subunit [Anthoceros formosae]
 gi|27808102|dbj|BAC55504.1| NADH dehydrogenase ND6 subunit [Anthoceros formosae]
          Length = 200

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            +FF       I  S  VV + N +YS F L   FV  + L+LLL A+FVA   +++YVG
Sbjct: 12  EVFFVFIELGLIFGSLGVVFLTNIVYSAFLLGLVFVCISFLYLLLDADFVATAQILIYVG 71

Query: 65  AVIVFFLFIIMMLDIDIEVA-------EPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           AV +  +F +M+++    +                  S F  +++  L +  SN    + 
Sbjct: 72  AVNILIVFAVMLINKPQSLQFLPSWTVGDTITLILCTSLFFLLISMILSISWSNIFSIAQ 131

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             ++   V K ++V+ IG  L   +  P E+   +LL+++IGAI +  R ++
Sbjct: 132 SNKIGEQVLK-SSVQGIGSSLLIDFLLPFELLSIVLLVALIGAITIARREKK 182


>gi|156598197|gb|ABU85362.1| NADH-plastoquinone oxidoreductase subunit 6 [Elaeis oleifera]
          Length = 176

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +    F  + I+    VV + NPI+S FSL    V  +  ++L  + FVA   L++Y
Sbjct: 7   IHDILVVFFGSVLILGGLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M ++      +       +G     ++   ++      +  ++   + 
Sbjct: 67  VGAINVLIIFAVMFMNGSEYSNDSYF--WTIGDGVTSLVCTSILFSLITIIPDTSWYGIF 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         +N++ IG  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 125 WTTRSSQIMEQDLISNIQQIGIHLSTDFYLPFELISIILLVSLIGAITMARQ 176


>gi|306817877|ref|ZP_07451616.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304649356|gb|EFM46642.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 352

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 1/162 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++F  + S  A++    V   R  +++   ++   ++ AG++  LGAEF+  + +VVY 
Sbjct: 21  QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++  LF+IM++ +   +  PR+         + +  A  I+        +    +  
Sbjct: 81  GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                +N   I   +  QY +P+E+   +L+++ +GA+ L  
Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTLTH 181


>gi|238753746|ref|ZP_04615107.1| NADH-quinone oxidoreductase subunit J [Yersinia ruckeri ATCC 29473]
 gi|238707982|gb|EEQ00339.1| NADH-quinone oxidoreductase subunit J [Yersinia ruckeri ATCC 29473]
          Length = 181

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ + +A++++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     + R       S +IG     L++ +      S+  +   +
Sbjct: 62  AIMVLFVFVVMMLNLGKVDEQERA--WLKPSVWIGPALLALVLLSVLIYAISSLTD-QGI 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E++  +LL  ++ A  +   H+  
Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164


>gi|159036136|ref|YP_001535389.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora
           arenicola CNS-205]
 gi|157914971|gb|ABV96398.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora
           arenicola CNS-205]
          Length = 200

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 14/204 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M            +A+ S  LVV  R+ + +   L+      AG++L+L AE VA + ++
Sbjct: 1   MTAADALLLALGALAVGSGALVVATRHLVRAGLYLVLCLAAVAGMYLVLTAELVAWVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGAV+V  LF +M+    I  +    + G+  +   G     L     +   +S    
Sbjct: 61  IYVGAVVVLLLFAVMLTRAPIGASTDLDRPGWPAALIGGGTGLGLAALLVDAYRWSTV-- 118

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
               +      E IG+ ++  +  P E+   +LL +++GAI+L    R DI R  + +  
Sbjct: 119 ---QLPTAGTAERIGEQVFQSWVLPFEVLSMLLLAALVGAIIL---SRPDIGRPPVDRDG 172

Query: 181 ESNP------DNSIVMVKVKSGKG 198
           +  P       ++   V  K G+G
Sbjct: 173 QGRPGRAGDAADATGGVDGKPGEG 196


>gi|227874593|ref|ZP_03992756.1| NADH dehydrogenase subunit J [Mobiluncus mulieris ATCC 35243]
 gi|227844802|gb|EEJ54948.1| NADH dehydrogenase subunit J [Mobiluncus mulieris ATCC 35243]
          Length = 353

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 1/162 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q++F  + S  A++    V   R  +++   ++   ++ AG++  LGAEF+  + +VVY 
Sbjct: 21  QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA+++  LF+IM++ +   +  PR+         + +  A  I+        +    +  
Sbjct: 81  GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                +N   I   +  QY +P+E+   +L+++ +GA+ L  
Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTLTH 181


>gi|325610641|gb|ADZ36569.1| NADH dehydrogenase subunit 6 [Stewartia crassifolia]
          Length = 176

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
            S  V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M +
Sbjct: 22  GSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFM 81

Query: 78  D-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           +         +             S F+ ++   L       +  +   ++       +N
Sbjct: 82  NGSEYSKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWATKSNQILEQDL-ISN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 141 SQKIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176


>gi|91214192|ref|YP_538815.1| NADH dehydrogenase subunit 6 [Glycine max]
 gi|122202478|sp|Q2PMN5|NU6C_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|83595793|gb|ABC25174.1| NADH-plastoquinone oxidoreductase subunit 6 [Glycine max]
          Length = 176

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ S  VV   NPI+S FSL    V  +  ++L  + FVA   L++Y
Sbjct: 7   LHDFLLVFLGSGLILGSLGVVLFTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  +F +M ++      + R              S F+ ++   L       +  
Sbjct: 67  VGAINVLIIFAVMFMNGSEYYQDFRLWTVGDGITLMVCTSIFVSLITTILDTSWHGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +   ++        + + IG  L T +  P E+   ILL+++IGAIV+  +
Sbjct: 127 TRPNQIIEQDLISTS-QQIGIHLSTDFFLPFELISIILLVALIGAIVVARQ 176


>gi|325610548|gb|ADZ36490.1| NADH dehydrogenase subunit 6 [Stewartia rubiginosa]
 gi|325610574|gb|ADZ36513.1| NADH dehydrogenase subunit 6 [Stewartia monadelpha]
 gi|325610594|gb|ADZ36530.1| NADH dehydrogenase subunit 6 [Stewartia sinensis]
          Length = 176

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
            S  V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M +
Sbjct: 22  GSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFM 81

Query: 78  D-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           +         +             S F+ ++   L       +  +   ++       +N
Sbjct: 82  NGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWATKSNQILEQDL-ISN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 141 SQKIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176


>gi|213018784|ref|ZP_03334592.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995735|gb|EEB56375.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 143

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/146 (36%), Positives = 92/146 (63%), Gaps = 8/146 (5%)

Query: 56  MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           M+ ++VY+GAV V FLF++MMLDID      R ++GF     +G +   +     +F++ 
Sbjct: 1   MMVMIVYIGAVAVLFLFVVMMLDIDY----IRLRQGFAKHCTLGAMLCVVFFLVISFVIR 56

Query: 116 SAEGELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKR 173
           S+   +S ++ +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+  ++ +K+
Sbjct: 57  SSAPNISNVINYNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKK 116

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q++ KQL     +S+ +VK K GKG+
Sbjct: 117 QNVLKQL--TQSSSVKLVKAKFGKGV 140


>gi|296936724|gb|ADH94396.1| NADH-plastoquinone oxidoreductase subunit 6 [Syzygium cumini]
          Length = 176

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ S  VV + NPIYS FSL    V  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLILGSLGVVLLINPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ +  LF +M ++      +       +G     ++   ++V     ++ ++   + 
Sbjct: 67  VGAINILILFAVMFMNGSEYYKDLNL--WTVGDGITSLVCTSILVSLMTTILDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                          N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 125 WTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|306486044|gb|ADM92669.1| NADH-plastoquinone oxidoreductase subunit 6 [Franklinia alatamaha]
          Length = 158

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            I+SS  V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +
Sbjct: 1   LILSSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAV 60

Query: 75  MMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           M ++         +             S F+ ++   L       +  +   ++      
Sbjct: 61  MFMNGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWATKSNQILEQDL- 119

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 120 ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 158


>gi|84494921|ref|ZP_00994040.1| NADH dehydrogenase subunit J [Janibacter sp. HTCC2649]
 gi|84384414|gb|EAQ00294.1| NADH dehydrogenase subunit J [Janibacter sp. HTCC2649]
          Length = 269

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++ + +A++ +  ++  R  +++   +    +     +L  GA+F+ +I + V
Sbjct: 4   TGEAILFWVLAPLAVVGALGLIFARKAVHAALGMALTMIILGVFYLAQGADFLGVIQIFV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           Y GAV++ FLF++M++ +D     V   + +R       +G+ A  +       +  +  
Sbjct: 64  YTGAVMMLFLFVVMLVGVDSSDSIVETLKGQRAAATVLTLGLGALLMGAIGRITIGDAPA 123

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISG 150
            +L  +     NV  + ++++ +Y +  E + 
Sbjct: 124 NKLDAINTDKGNVSGVAELIFGRYVWVFEATS 155


>gi|196228500|ref|ZP_03127367.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chthoniobacter flavus Ellin428]
 gi|196227903|gb|EDY22406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Chthoniobacter flavus Ellin428]
          Length = 170

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 3/168 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FYLF+ + +     VV  RNP+ S   L+ +F+  A LF+ L A F+A+I ++VY
Sbjct: 1   MSPILFYLFAALTVCFGIAVVANRNPVASALCLVVSFLGLAALFVGLDAYFIAVIQVLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+V FLFIIM+LD+  E         ++G   + +     +         + +   +
Sbjct: 61  AGAVMVLFLFIIMLLDLKAETRRKPNLPAYVGGGLVALAFIAQLWLVLERYSAAHQPFPT 120

Query: 123 RLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               +G   ++V N+G  L++ +  P ++ G ++L++ IG +VL  R 
Sbjct: 121 MWASEGKSIDDVTNVGTTLFSVHNLPFQVIGVLILVATIGVVVLSKRE 168


>gi|255037785|ref|YP_003088406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter
           fermentans DSM 18053]
 gi|254950541|gb|ACT95241.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter
           fermentans DSM 18053]
          Length = 173

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 88/171 (51%), Gaps = 4/171 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+++ FY+FS + +++   ++  RN IY  F+L  AF+  A L++L GA+F+A+  +++Y
Sbjct: 1   MEAIIFYIFSALTLLAGLFILVSRNLIYGAFALFLAFLGVAALYVLAGADFLAVSQIMIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSAEG 119
           VG ++V  +F IM+     +  +  +       +     G+LA          ++ S++ 
Sbjct: 61  VGGILVLLIFGIMLTQKREKSDDSTRHNRVDVPITRRIWGVLAGVGFFGLLVKVILSSDF 120

Query: 120 ELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            ++       + +  IG  L T +  P E++  +LL+++IGA  L L    
Sbjct: 121 AMAGAEMSTKSTIRTIGVELMTSHLLPFEVAAILLLVALIGAAYLALNRNP 171


>gi|42525211|ref|NP_970591.1| NADH dehydrogenase I chain J [Bdellovibrio bacteriovorus HD100]
 gi|39577422|emb|CAE81245.1| NADH dehydrogenase I chain J [Bdellovibrio bacteriovorus HD100]
          Length = 178

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 5/172 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   +  F+  +F+ + S   V+ + NPIYS   L    V  + LF+ L A F+A + L+
Sbjct: 1   MTADAFLFWFLAFVTLASGLSVILMSNPIYSALCLAMTMVGISALFVTLNAYFIAGVQLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAE 118
           VY GAV+V F  +IM+ D+  +V    + +  G +    +G+ A  ++   +  +    E
Sbjct: 61  VYAGAVMVLFTMVIMLFDLKKDVQAFTRGKFTGVVKIASVGLFAGLVVGAIAMSVNLMGE 120

Query: 119 GELSRLVFKGN---NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                 V  G    + + +G++L+T+Y +  E  G +LL+  +GA+ L    
Sbjct: 121 KTTDNPVLVGTGMESTKALGQILFTKYIFGFEALGVLLLVIAVGAVALARSK 172


>gi|24372599|ref|NP_716641.1| NADH dehydrogenase subunit J [Shewanella oneidensis MR-1]
 gi|24346624|gb|AAN54086.1|AE015546_3 NADH dehydrogenase I, J subunit [Shewanella oneidensis MR-1]
          Length = 183

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 87/166 (52%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FY  + +A+ S+  V++  NP++++ +LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   ELAFYASALVAVYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGAAFAGALQVIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++  + A+ +     +     G+L+  L+   ++ ++    G++   
Sbjct: 62  AIMVLFVFVVMMLNLGSDQAQEKNWLTPMTWVGPGLLSLTLLGFLAHGILGVTGGQIG-- 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E++  +LL  M+ A  L    +  
Sbjct: 120 -LTEVSAKQVGIELFGPYVLAVELASILLLAGMVTAYHLGREDKSG 164


>gi|323481962|ref|YP_004237305.1| NADH dehydrogenase subunit 6 [Lophelia pertusa]
 gi|323461315|emb|CBZ41203.1| NADH dehydrogenase subunit 6 [Lophelia pertusa]
          Length = 168

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 9/165 (5%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V++  NP++S F L+  F+N+A  FLLLG +F+A++ L+VYVGA+ V FLF+IM+L++ 
Sbjct: 1   MVISALNPVFSPFWLVIVFINSAVFFLLLGVDFIALMFLLVYVGAIAVLFLFVIMLLNLT 60

Query: 81  IEVAEPRKKR---------GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
                  K+          GFL   F    A+        F   + +     L+   +N+
Sbjct: 61  DYPPAFFKREADMTNYIPIGFLIGVFFFSEASSSWFVLGPFQKENWDLSFPWLIISYHNI 120

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           E +G+VLY        ++ FILL++MIGAI L        K Q +
Sbjct: 121 EALGQVLYVVCCCLFILASFILLVAMIGAIFLTQDKAPLGKTQQL 165


>gi|237714288|ref|ZP_04544769.1| NADH dehydrogenase subunit I [Bacteroides sp. D1]
 gi|237719848|ref|ZP_04550329.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4]
 gi|262408335|ref|ZP_06084882.1| NADH dehydrogenase subunit I [Bacteroides sp. 2_1_22]
 gi|293373610|ref|ZP_06619958.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           ovatus SD CMC 3f]
 gi|294646449|ref|ZP_06724090.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           ovatus SD CC 2a]
 gi|294809421|ref|ZP_06768126.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298480347|ref|ZP_06998545.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. D22]
 gi|229445780|gb|EEO51571.1| NADH dehydrogenase subunit I [Bacteroides sp. D1]
 gi|229451117|gb|EEO56908.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4]
 gi|262353887|gb|EEZ02980.1| NADH dehydrogenase subunit I [Bacteroides sp. 2_1_22]
 gi|292631435|gb|EFF50065.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           ovatus SD CMC 3f]
 gi|292638220|gb|EFF56597.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           ovatus SD CC 2a]
 gi|294443357|gb|EFG12119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295086640|emb|CBK68163.1| NADH dehydrogenase subunit J [Bacteroides xylanisolvens XB1A]
 gi|298273628|gb|EFI15191.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. D22]
          Length = 170

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 7/170 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V ++F I++   + + AE  K+   L   F  I    +I+  +    F    + 
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKAKRSKVLAGLFTMIAGLAIILFITLKHDFM---QT 120

Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
           + L  +  ++  IG  L +     Y  P E    +LL  +IG I++  + 
Sbjct: 121 ANLAPQEISIHAIGNALLSSDKYGYVLPFEAVSILLLACIIGGIMIARKR 170


>gi|119356795|ref|YP_911439.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354144|gb|ABL65015.1| NADH dehydrogenase subunit J [Chlorobium phaeobacteroides DSM 266]
          Length = 172

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FYLF+ + + S+  VV  R+ IYS FSL+F F   A L++LL A+F+A+  +VVYVG
Sbjct: 7   TIIFYLFAAITVFSAAFVVFSRSVIYSAFSLLFTFFGTAALYVLLSADFIAVTQVVVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V  LF +M  +    + +   K   L      +L A +          +   + S +
Sbjct: 67  GILVLLLFGVMFTN---SIMQTDLKTDVLHVVPGTLLFAAITGGMLYVFYTTGTWKSSLV 123

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +G+ VE IG    ++Y  P E++  +LL  +IGA  L    +  
Sbjct: 124 TLQGSVVERIGYETMSRYILPFEMASILLLAVLIGAAFLARFDKPG 169


>gi|298384969|ref|ZP_06994528.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 1_1_14]
 gi|298262113|gb|EFI04978.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 1_1_14]
          Length = 170

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 7/170 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V ++F I++   + + AE  K+  FL   F  I    +I+  +   +     + 
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFLAGLFTMIAGLAIILFIT---LKHNFLQT 120

Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
           + LV    N+  IG  L +     Y  P E    +LL  +IG I++  + 
Sbjct: 121 TNLVPLEINIHTIGNALLSSDKYGYILPFEAISILLLACIIGGIMIARKR 170


>gi|315453244|ref|YP_004073514.1| NADH dehydrogenase I chain J [Helicobacter felis ATCC 49179]
 gi|315132296|emb|CBY82924.1| NADH dehydrogenase I chain J [Helicobacter felis ATCC 49179]
          Length = 174

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            ++L FY F+ + +  +F+VVT  N +Y++ SL  A V  +  F LL AEF+ ++ ++VY
Sbjct: 2   FETLAFYFFAALTLGMAFVVVTTTNILYAMTSLATAMVFVSAFFFLLDAEFLGVVQILVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--E 120
           VGAV+V + F +M L+   EV E            + +    + +  + F+   A    E
Sbjct: 62  VGAVVVMYAFGMMFLNASQEVQERAHAPKIPALLVMVLAVVLVALLGAPFIAQYAYTLQE 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                   +N + IG VL+++Y    E+  F+LL++++GAI   L+ 
Sbjct: 122 SLSPSVDISNTKLIGYVLFSKYLVAFEVGAFMLLVALVGAIASALKK 168


>gi|149280561|ref|ZP_01886677.1| NADH dehydrogenase I chain J [Pedobacter sp. BAL39]
 gi|149228676|gb|EDM34079.1| NADH dehydrogenase I chain J [Pedobacter sp. BAL39]
          Length = 165

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 2/166 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FY  + + +I S +VV  +NP++SV  LI  F      ++LL A+F+A++  +VY
Sbjct: 1   MGTSVFYFVATLTVIFSLMVVFAKNPVHSVLYLIVTFFTLTVHYILLNAQFLAVVNFIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +GA++V FLF++M+L+++ +    +     +     G      IV +      S    L 
Sbjct: 61  MGAIMVLFLFVLMLLNLNKDNEPLKSTLVKVVGVVAGCCLVVTIVGSLKATAISDPVVLR 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                   V+N+GK L+  Y  P E+S  +LL +M+GA++L  + +
Sbjct: 121 NPNLGL--VKNLGKELFGPYMLPFELSSILLLTAMVGAVLLTKKEK 164


>gi|242310563|ref|ZP_04809718.1| predicted protein [Helicobacter pullorum MIT 98-5489]
 gi|239522961|gb|EEQ62827.1| predicted protein [Helicobacter pullorum MIT 98-5489]
          Length = 187

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY FS + +    +VVT +N +Y++ +L    +  +G F LLGAEF+ ++ +VVY
Sbjct: 2   FEAIAFYTFSALTLAMFLIVVTTKNILYALSALAAGMIFVSGFFFLLGAEFLGVVQIVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAEGE 120
            GAVI  + F +M  D      E  +    L           +++  +  +    S    
Sbjct: 62  TGAVIALYAFAMMFFDAQKLQNERIENPKLLFLLVGLGALLLVLIVVAPIIAQNLSQISP 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
              +  +  NV+ +G VL+T++  P EI+  +LL++MI  I+L 
Sbjct: 122 QIPVKEEVGNVQMVGYVLFTKFLIPFEIAAIMLLVAMIAGIILA 165


>gi|167463147|ref|ZP_02328236.1| NADH dehydrogenase subunit J [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383092|ref|ZP_08056919.1| hypothetical protein PL1_1941 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152754|gb|EFX45380.1| hypothetical protein PL1_1941 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 173

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 5/161 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F  F+  AI  +  +VT    IY V S  F F++ AGL++LL AEFVA + +++Y GA+
Sbjct: 16  LFLFFAMCAIGGAIYMVTFTKVIYMVLSAAFTFISLAGLYVLLEAEFVAFVQVLIYAGAI 75

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            +  +F IMM     E     +    + +    +    L+  A     FS        + 
Sbjct: 76  SILMIFGIMMTKHRAEEKPGGRVAQKVLTGIGCLALFGLLFYAIQQSTFSP-----GELR 130

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           + +N   IGK+L++ +  P EI   +L ++ IGAIV+  R 
Sbjct: 131 EEDNTLEIGKLLFSGHVIPFEIMSVLLTVAFIGAIVIAKRE 171


>gi|156598391|gb|ABU85455.1| NADH-plastoquinone oxidoreductase subunit 6 [Musa acuminata]
          Length = 176

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +       + I+    VV + NPIYS FSL    V  +  ++   + FVA   L++Y
Sbjct: 7   IHDILVAFLGSVLILGGLGVVLLTNPIYSAFSLGLVLVCISLFYIPSNSFFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  +F +M ++      +       +G     ++   ++      +  ++   + 
Sbjct: 67  VGAVNVLIIFAVMFMNGSEYSNDSYF--WTIGDGVTSLVCTSILFSLITTIPDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         +NV+ IG  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 125 WTTRSNQIIEQDLISNVQQIGIHLSTDFYLPFELISIILLVSLIGAITMARQ 176


>gi|93005411|ref|YP_579848.1| NADH dehydrogenase (quinone) [Psychrobacter cryohalolentis K5]
 gi|92393089|gb|ABE74364.1| NADH dehydrogenase (quinone) [Psychrobacter cryohalolentis K5]
          Length = 247

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 79/144 (54%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +   FY  + +AI +S  VVT  NP++++ S+I + +  AG+F ++GA F   + +VVY 
Sbjct: 9   ELAGFYSLAAVAIFASLRVVTQANPVHAILSMIVSLLAIAGIFFVIGAPFAGALEIVVYA 68

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA++V F+F+IMML++ +   E  ++    G++ I      +I      M+     E + 
Sbjct: 69  GAIMVLFVFVIMMLNLGMRNDEREERWLDAGTWAIPTGLTIIIAVVLYAMIGLNHNEAAL 128

Query: 124 LVFKGNNVENIGKVLYTQYAYPLE 147
           +     + + +G VL+T+Y   +E
Sbjct: 129 IGGTTISAKAVGTVLFTKYIMLIE 152


>gi|313183874|ref|YP_004021717.1| NADH-plastoquinone oxidoreductase subunit 6 [Prunus persica]
 gi|309321486|gb|ADO65027.1| NADH-plastoquinone oxidoreductase subunit 6 [Prunus persica]
          Length = 176

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +          + I+    VV   NPIYS FSL    V  +  ++LL + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSVLILGGMGVVLFTNPIYSAFSLGLVLVCISLFYILLNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK---RGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VGA+ V  +F +M ++      +        G        I    +I             
Sbjct: 67  VGAINVLIVFAVMFMNGSEYYKDLNLWTVGDGVTLPVCTSIFVLLMITITDTSWYGIIWT 126

Query: 120 ELSRLVFK---GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             S  + +    +N + IG  L T +  P E    ILL ++IGAI +  +
Sbjct: 127 TRSNQIIEQDLISNSQQIGIHLSTDFFLPFEFVSIILLAALIGAIAVARQ 176


>gi|29349470|ref|NP_812973.1| NADH dehydrogenase I subunit J [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570160|ref|ZP_04847569.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6]
 gi|29341379|gb|AAO79167.1| NADH dehydrogenase I, chain J [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840541|gb|EES68623.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6]
          Length = 170

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 7/170 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V ++F I++   + + AE  K+  FL   F  +    +I+  +   +     + 
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFLAGLFTMVAGLAIILFIT---LKHNFLQT 120

Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
           + LV    N+  IG  L +     Y  P E    +LL  +IG I++  + 
Sbjct: 121 TNLVPLEINIHTIGNALLSSDKYGYILPFEAISILLLACIIGGIMIARKR 170


>gi|32267093|ref|NP_861125.1| NADH dehydrogenase subunit J [Helicobacter hepaticus ATCC 51449]
 gi|32263145|gb|AAP78191.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449]
          Length = 173

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 92/169 (54%), Gaps = 4/169 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FYLFS + I+S  +VVT +  +Y++ +L    +  +G+F +L AEF+ ++ ++VY
Sbjct: 2   FETIAFYLFSTLCIVSFLIVVTSKRILYAMTALASGMIFISGIFFVLDAEFLGVVQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            G+V+  + F +M  D   ++ E  K    +     GI    + +     +  + E    
Sbjct: 62  SGSVVALYAFAMMFFDTSKDIIESYKNEWVVCILCFGIAVVLVCIFGMPLLGSNLEAVAD 121

Query: 123 RL----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                 + + NN++ IG +++T+Y  P EI+ F+LL++M+  I+L ++ 
Sbjct: 122 SQNLLNIAEMNNIQMIGYIIFTKYLIPFEIAAFMLLVAMVVGIILSIKR 170


>gi|139390402|ref|YP_001122999.1| NADH dehydrogenase ND6 [Aethionema cordifolium]
 gi|221272305|sp|A4QJG9|NU6C_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286195|dbj|BAF49824.1| NADH dehydrogenase ND6 [Aethionema cordifolium]
          Length = 176

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            +  S  VV   NPI+S FSL F  V  + L++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLLFGSLGVVLFPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M ++ D E +    +          I    L    S  +  S  G + 
Sbjct: 67  VGAITVLIIFAVMFMN-DSEYSTDLNRWTVGDGITSVICTTILFSLISTILDTSWYGVIW 125

Query: 123 RLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                        +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 126 TTRLNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176


>gi|325610566|gb|ADZ36506.1| NADH dehydrogenase subunit 6 [Stewartia serrata]
          Length = 176

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 8/156 (5%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
            S  V+   NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M +
Sbjct: 22  GSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFM 81

Query: 78  D-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           +         +             S F+ ++   L       +  +    +       +N
Sbjct: 82  NGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWATKSNHILEQDL-ISN 140

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 141 SQKIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176


>gi|156598041|gb|ABU85286.1| NADH-plastoquinone oxidoreductase subunit 6 [Cycas micronesica]
          Length = 180

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + N IYS  SL    V  + L++LL A+FVA   +++YVGAV V  +F +M+++   
Sbjct: 26  VVLLTNIIYSALSLGPVLVCISLLYILLNADFVAAAQILIYVGAVNVLIVFAVMLMN--N 83

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--------GNNVEN 133
           +          +G     ++   L       ++ ++  E+S              NNV+ 
Sbjct: 84  QKYPNFVPLWTVGDGITLVVCTSLFCSLITIILNTSWSEISMTTKSNQILEQDLTNNVQR 143

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           IG  L T +  P E+   ILL++++GAI +  R 
Sbjct: 144 IGAHLSTDFFLPFELLSIILLVALVGAITIARRE 177


>gi|258593442|emb|CBE69781.1| NAD(P)H-quinone oxidoreductase chain 6 (NAD(P)H dehydrogenase I,
           chain 6) (NDH-1, chain 6) [NC10 bacterium 'Dutch
           sediment']
          Length = 170

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +  + F+L +   + +S LVV  +N ++   +L+FAF   A LF+LL AEF+A   +++
Sbjct: 5   TVTHVVFFLMAAFTVGASLLVVLAKNIVHCAIALVFAFFGVAALFVLLDAEFLAAAQVLL 64

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVG + +  LF IM+                     I  +    IV    +        +
Sbjct: 65  YVGGITILLLFAIMLTSRISAGGVKIMNE----QVGISAVVVLAIVGLLAYANLKGFPAM 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              +   +N  +IGK+L T Y  P E+   +LL +M+GAI+L  R R
Sbjct: 121 VPPLTMADNTASIGKLLLTTYVLPFEVVSLLLLAAMVGAIILARRER 167


>gi|150251537|ref|YP_001312269.1| NADH dehydrogenase subunit 6 [Cycas taitungensis]
 gi|221272320|sp|A6H5P5|NU6C_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|149941587|dbj|BAF65011.1| NADH dehydrogenase subunit 6 [Cycas taitungensis]
          Length = 180

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + N IYS  SL    V  + L++LL A+FVA   +++YVGAV V  +F +M+++   
Sbjct: 26  VVLLTNIIYSALSLGPVLVCISLLYILLNADFVAAAQILIYVGAVNVLIVFAVMLMN--N 83

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--------GNNVEN 133
           +          +G     ++   L       ++ ++  E+S              NNV+ 
Sbjct: 84  QKYPNFVPLWTVGDGITLVVCTSLFCSLITIILNTSWSEISMTTKSNQILEQDLTNNVQR 143

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           IG  L T +  P E+   ILL++++GAI +  R 
Sbjct: 144 IGAHLSTDFFLPFELLSIILLVALVGAITIARRE 177


>gi|116009011|gb|ABJ52175.1| NADH dehydrogenase subunit 6 [Phyllostachys edulis]
          Length = 173

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 10/155 (6%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             VV + NPIYS FSL    +  +  ++LL + FVA+  L++YVGA+ V  +F +M   I
Sbjct: 21  IGVVLLTNPIYSAFSLGLVLICISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMF--I 78

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNV 131
           D       K    +G  F  ++   ++      ++ ++   +               NNV
Sbjct: 79  DGSEWSKNKNYWTIGDGFTSLVCITILFSLMTTILDTSWYGILWTTRSNQIVEQGLINNV 138

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           + IG  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 139 QQIGIHLATDFYLPFELISIILLVSLIGAITMARQ 173


>gi|124112063|ref|YP_001019164.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chlorokybus
           atmophyticus]
 gi|221272346|sp|Q19V56|NU6C_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|124012179|gb|ABD62195.2| subunit 6 of NADH-plastoquinone oxidoreductase [Chlorokybus
           atmophyticus]
          Length = 214

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 16/182 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q    +      ++ +  VV + N +YS F L    ++ AG++LLL A+FVA   +++Y
Sbjct: 7   VQKFSLFFLEGAVLVGALGVVLLPNILYSAFLLGGVLMSIAGIYLLLNADFVAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIE------VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           VGA+ V  LF IM+++ +                  +G   IG+    + +  +   +  
Sbjct: 67  VGAINVLILFAIMLVNKNDGRVAAGTSNSSGVTNNIIGLTCIGLAGFLIDMIVTTPWLPK 126

Query: 117 AEGELSRLVFKGNNVEN----------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                + L  K ++             IG  +++ +  P E+   +LL++++GAIV+  R
Sbjct: 127 GVAVATSLSAKADSTAAQTQLKGSISIIGLHIFSDFLLPFEVISLLLLVTLVGAIVIARR 186

Query: 167 HR 168
            R
Sbjct: 187 ER 188


>gi|99034365|ref|ZP_01314389.1| hypothetical protein Wendoof_01000807 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 143

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/146 (38%), Positives = 93/146 (63%), Gaps = 8/146 (5%)

Query: 56  MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           M+ L+VY+GAV V FLF++MMLDID      R ++GF   F +G +   +     +F++ 
Sbjct: 1   MMVLIVYIGAVAVLFLFVVMMLDIDY----IRLRQGFAKHFTLGAILCGVFFLIISFVIR 56

Query: 116 SAEGELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKR 173
           S+   +S ++ +  NNV+ IG +LYT Y Y   +SG +LL++++GAI L L+  ++ +K+
Sbjct: 57  SSTLNISNVINYNANNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKK 116

Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199
           Q++ KQL     +S+ +VK K GKG+
Sbjct: 117 QNVLKQL--TQSSSVKLVKAKFGKGV 140


>gi|139389318|ref|YP_001123083.1| NADH dehydrogenase ND6 [Aethionema grandiflorum]
 gi|221272306|sp|A4QJQ3|NU6C_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286280|dbj|BAF49908.1| NADH dehydrogenase ND6 [Aethionema grandiflorum]
          Length = 176

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            +  S  VV   NPI+S FSL F  V  + L++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLLFGSIGVVLFTNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M ++ D E +    +          I    L    S  +  S  G + 
Sbjct: 67  VGAITVLIIFAVMFMN-DSEYSTDLNRWTVGDGITSLICTTILFSLISTILDTSWYGVIW 125

Query: 123 RLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                        +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 126 TTRLNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176


>gi|225871977|ref|YP_002753431.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196]
 gi|225791616|gb|ACO31706.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196]
          Length = 172

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F +F    +  +  ++  R+PI S  SLI    + A L+LLLGAEF+A   ++VY
Sbjct: 1   MHLVLFIIFGAFCVAGAINLLLQRHPINSALSLIVVMTSLAVLYLLLGAEFLAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F F+IM+L+   E     +  G   ++++G   A  +     F+  S +  L 
Sbjct: 61  SGAIMVLFTFVIMLLNAGKE----ERTHGSRAAYWLGFPGAAALFALLTFIFLSHQPSLG 116

Query: 123 RLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             V   +      + +VL+     P E++  ++L++++GA+ L       
Sbjct: 117 YAVLGPDMVGTGELSQVLFRNLLLPFEVTSVLILIAILGAVALARHTNEK 166


>gi|296133531|ref|YP_003640778.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermincola
           sp. JR]
 gi|296032109|gb|ADG82877.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermincola
           potens JR]
          Length = 164

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 86/165 (52%), Gaps = 4/165 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F++ + + + S+ ++V  RN  +S   +I  F+  A  +L+L A+F+A + ++VY G
Sbjct: 2   TIMFWVIAIITLGSALMMVMNRNIFHSALFMIVTFIGVAATYLMLQADFMAAVQVLVYGG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A+ +F +F IM+     +  + ++   F     +  + A  ++  +  MV      +S  
Sbjct: 62  AIAIFVVFGIMLT----QRGDMKQSNLFSKHAPLAAIVALALIVINGVMVLKTNWAVSNA 117

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                 V  I +++  +Y  P E++  +LL+++IGA+++    ++
Sbjct: 118 APPTETVGPIAELMLQKYVIPFEVAAILLLVALIGAVIIAKEVKK 162


>gi|268316804|ref|YP_003290523.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodothermus
           marinus DSM 4252]
 gi|262334338|gb|ACY48135.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodothermus
           marinus DSM 4252]
          Length = 170

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  L F+L +  AI ++  ++  RNP+ S   L+      AGL+L L A F+ +I +++Y
Sbjct: 2   IAQLLFFLLAVTAIAAALGMLIARNPVSSALWLVLNLFCIAGLYLTLQASFLGVIQVLIY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGE 120
            GA++V FLF+IM+L+++      +   G + +F +   +LA  + V A    V      
Sbjct: 62  AGAIMVLFLFVIMLLNLEALPHPRQIDWGKVLAFVVTMIVLAQLVYVVALGLDVLPTFVA 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                    + + +G+ L T+Y  PL++ G +LL + IGA++L  R 
Sbjct: 122 TPEQAAVTGSAQALGRELLTRYIMPLQVIGILLLAATIGAVMLAKRR 168


>gi|219848529|ref|YP_002462962.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Chloroflexus aggregans DSM 9485]
 gi|219542788|gb|ACL24526.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus
           aggregans DSM 9485]
          Length = 217

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 2/168 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V+  + F + +   ++++ +VV+VRN I+S   LI  F     L++LL AEF+A++ ++V
Sbjct: 3   VVVQIVFGIIALFILVAAVMVVSVRNVIHSALWLIACFFGVGALYMLLQAEFLAVVQVLV 62

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAEG 119
           YVGAV V  LF IM+          +    +     I +L  A  +     N        
Sbjct: 63  YVGAVSVLILFAIMLTRQISGEGVRQLTTRWPIVLAISVLLFATVMAPTLINQQWNVPPA 122

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                         +G+    ++    ++ G +L +++IGAIV+    
Sbjct: 123 PPLGTPEPIAGPAELGRGFVNEFLLQFQVVGVLLTVALIGAIVIAFEE 170


>gi|197285612|ref|YP_002151484.1| NADH dehydrogenase subunit J [Proteus mirabilis HI4320]
 gi|227356115|ref|ZP_03840505.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis ATCC 29906]
 gi|194683099|emb|CAR43656.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis HI4320]
 gi|227163760|gb|EEI48672.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis ATCC 29906]
          Length = 177

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   ++I+++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAGLISILATLRVITHTNPVHALLYLIVSLIGLSVVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSR 123
           A++V F+F++MML++   V E  +K      +    + + +++    + + S   GE+S 
Sbjct: 62  AIMVLFVFVVMMLNLGKSVVEQERKWLQPRFWIGPAILSLVLLIVLVYAISSVTHGEISG 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
            +      + +G  L+  Y   +E++  +LL  +I A  +  
Sbjct: 122 EIIGA---KEVGISLFGPYILAVELASVLLLSGLIVAYHIGR 160


>gi|323702658|ref|ZP_08114319.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532321|gb|EGB22199.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfotomaculum nigrificans DSM 574]
          Length = 172

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 6/169 (3%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L S + + S+ LVVT++N ++SV  LI  F+  AG+FL+L A+FVA + ++VY GA
Sbjct: 8   IAFVLLSGVVLGSALLVVTLKNLVHSVLWLIVTFIGTAGVFLMLEADFVAAVQVLVYAGA 67

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           V +  +F +M++  +    + P   R  + +  +G+L   +       +   A+   S  
Sbjct: 68  VCIMVVFGVMLVQRNEMGNSNPFNYRFRIAAPVVGVLFIII-----GLLTAKAQWVTSGA 122

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                 V+ +  +L   +  P E++  +L +++ GA+VL+   R    R
Sbjct: 123 GVPKKTVQALAPILLGDFMIPFEVAAILLTVALTGALVLVKEVRAHGDR 171


>gi|158604903|gb|ABW74727.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Campylobacter
           concisus 13826]
          Length = 178

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 1/164 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +S  FYLFS + ++S    V  +N + +V +L    +  + +F LLGAEF+ ++ +VVY 
Sbjct: 3   ESFAFYLFSALILVSFSFSVLCKNALNAVSALAAGMIFISAIFFLLGAEFLGVVQIVVYT 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-LS 122
           GAV+V + F +M  D   E      K+  +  + +    A L++      ++SA+ E ++
Sbjct: 63  GAVVVLYAFAMMFFDTSKECEPKSGKKAKIIVYLLSSFIALLLIFIFLAPIYSAKQEVVN 122

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +    N+E +G +L+++Y    E+   +LL++M+  I+L+ +
Sbjct: 123 STLANLGNIEAVGILLFSKYLLAFEMCAIMLLVAMVAGIILIHK 166


>gi|13518490|ref|NP_084848.1| NADH dehydrogenase subunit 6 [Lotus japonicus]
 gi|23821907|sp|Q9BBP1|NU6C_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|13359031|dbj|BAB33248.1| NADH dehydrogenase ND6 [Lotus japonicus]
          Length = 176

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 8/172 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +            I+ S  VV + NPI+S FSL    V  + L++L  + FVA   L++
Sbjct: 6   TLHDFLLVFLGSGLILGSLGVVLLTNPIFSAFSLGLTLVCISLLYILSNSHFVAASQLLI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMV 114
           YVGA+ V  +F +M ++      + R              S FI ++           + 
Sbjct: 66  YVGAINVLIIFGVMFMNGSEYYQDFRLWTVGDGMTLMVCTSIFISLITTIPDTSWYGIIW 125

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +   ++        + + IG  L T +  P E+   ILL ++IGAIV+  +
Sbjct: 126 TTRSNQIIEQDLISTS-QQIGIHLSTDFFLPFELISIILLAALIGAIVVARQ 176


>gi|94968335|ref|YP_590383.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550385|gb|ABF40309.1| NADH dehydrogenase subunit J [Candidatus Koribacter versatilis
           Ellin345]
          Length = 166

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + F+ F+   +  +  ++  ++PI S  SL+    + AGLFLL+GAEFV  I ++VY
Sbjct: 2   LHEILFFFFAAGCVAGAINLLAQKHPINSALSLVVVMASLAGLFLLMGAEFVGAIQVIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IM+L+  +E      K   +       + A LI         S      
Sbjct: 62  AGAIMVLFVFVIMLLNAGVEEHTKSSKIAIVLGVPAAAIVATLITWILLHNEQSFTKVSI 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +      + IG +L+  Y  P E++  ++L+ ++GA+VL  + 
Sbjct: 122 GELHGTG--KEIGMLLFGPYLLPFEVTSVLVLIGIMGAVVLARKE 164


>gi|317046224|ref|YP_004072513.1| NADH dehydrogenase subunit 6 [Corynocarpus laevigata]
 gi|309252941|gb|ADO60361.1| NADH dehydrogenase subunit 6 [Corynocarpus laevigata]
          Length = 176

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +       F    I+    VV + N IYS FSL    V  A  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFFGSGIILGGMGVVLLTNSIYSAFSLGLVLVCIALFYILSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M +               +GS    ++   + V   N ++ ++   + 
Sbjct: 67  VGAINVLIIFAVMFM--KGSEYSKDFPLWTVGSGVTLLVCTSIFVSLINTILDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 125 WTTRSNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176


>gi|15150748|ref|NP_150414.1| NADH dehydrogenase subunit 6 [Pylaiella littoralis]
 gi|15147754|emb|CAC50855.1| NADH dehydrogenase subunit 6 [Pylaiella littoralis]
          Length = 222

 Score =  110 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + +     V + +NP+YS   L+  F   +G+  LLG EF+A++ L+VY GA
Sbjct: 5   IIFLIITTLGVGLGIKVTSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------------- 112
           + V  LF++MMLDI         K+  L  +   ++    +  + N              
Sbjct: 65  IAVLVLFVVMMLDIKAIENPWSSKKISLVFYPGSLVLFCCLGWSYNVKEIGFLPSFTLSL 124

Query: 113 ---MVFSAEGELSRLVFKGNNVENI---GKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
               V S     +    + ++   +     +LY+ YA  L I+G ILL++M+GAI L L+
Sbjct: 125 CKEKVESLYSSNNMWFVEFDSSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAISLTLQ 184

Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVK 194
            +     + + +QL     +++  +K K
Sbjct: 185 KKS---PESLYRQLGRESKHAVFSIKEK 209


>gi|85059571|ref|YP_455273.1| NADH dehydrogenase subunit J [Sodalis glossinidius str.
           'morsitans']
 gi|84780091|dbj|BAE74868.1| NADH dehydrogenase I subunit J [Sodalis glossinidius str.
           'morsitans']
          Length = 187

 Score =  110 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 85/168 (50%), Gaps = 4/168 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FYL   +A++++  V+T   P++++  LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   ELAFYLSGLVAVLATLRVITHTQPVHALLYLIISLLAIACVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSR 123
           A++V F+F++MML++ +   +         ++    +++  L+      +V + +  ++ 
Sbjct: 62  AIMVLFVFVVMMLNMSVGRDKQECAWLRPRAWIGPALMSLVLLAILVRALVGAGDHGIAG 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
            +      + +G  L+  Y   +E++  +LL  ++ A  L    R ++
Sbjct: 122 DLIAA---KTVGIALFGPYVLAVELASMLLLAGLVVAFHLGRDERDNV 166


>gi|306841951|ref|ZP_07474629.1| NADH dehydrogenase subunit J [Brucella sp. BO2]
 gi|306287984|gb|EFM59392.1| NADH dehydrogenase subunit J [Brucella sp. BO2]
          Length = 129

 Score =  110 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 4/129 (3%)

Query: 75  MMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---NN 130
           MMLD+D  E+     +   +G+    IL  ELI   ++ M     G+ +  +       N
Sbjct: 1   MMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFAPKLGQGALPIPDVATRTN 60

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190
              +G +LYT Y +  +++G +LL++MIGAIVL +RH+ ++KRQ I  Q+   P+ +I +
Sbjct: 61  TAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETAIEI 120

Query: 191 VKVKSGKGI 199
            KV++GKGI
Sbjct: 121 RKVETGKGI 129


>gi|21673602|ref|NP_661667.1| NADH dehydrogenase I, subunit 6 [Chlorobium tepidum TLS]
 gi|21646716|gb|AAM72009.1| NADH dehydrogenase I, subunit 6 [Chlorobium tepidum TLS]
          Length = 173

 Score =  110 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 3/169 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FY+F+ + ++S+  VV  +N IYS FSL+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 7   AIIFYIFAAVTVLSAAFVVFSKNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V  LF +M  +    +     K   L      +L   LIV        +       +
Sbjct: 67  GILVLLLFGVMFTNT---IMSTELKADVLNVVPGILLTLLLIVGMLFTFYTTGSWMPGEM 123

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
              G+ V++IG    ++Y  P E+   +LL++++GA  L    + + K 
Sbjct: 124 QLNGSVVQSIGLETMSRYMLPFEMFSIVLLVALLGAAYLARYDKANKKE 172


>gi|122894040|ref|YP_001004236.1| NADH-plastoquinone oxidoreductase subunit 6 [Ranunculus macranthus]
 gi|221272343|sp|A1XGT8|NU6C_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|85540854|gb|ABC70806.1| NADH-plastoquinone oxidoreductase subunit 6 [Ranunculus macranthus]
          Length = 177

 Score =  110 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+    VV + NPI+S FSL    V  +  +    + FVA   L++Y
Sbjct: 7   IHDFLLVFLGLGFIMGGLGVVLLTNPIFSAFSLGLVLVCTSLFYTPSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M ++     ++       +G     ++   + V     +  ++   + 
Sbjct: 67  VGAINVLIIFAVMFMNGSEYYSDFHL--WTVGDGVTSLVCTSIFVSLITTIPDTSWYGIV 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         NN + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 125 WTTRSNQIIEQDLINNSQQIGIHLSTDFFLPFELISIILLVALIGAISMARQ 176


>gi|65329286|gb|AAY42125.1| Nqo10 [Rhodothermus marinus]
          Length = 170

 Score =  110 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 2/167 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  L F+L +  AI ++  ++  RNP+ S   L+      AGL+L L A F+ +I +++Y
Sbjct: 2   IAQLLFFLLAVTAIAAALGMLIARNPVSSALWLVLNLFCIAGLYLTLQASFLGVIQVLIY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGE 120
            GA++V FLF+IM+L+++      +   G + +F +   +LA  + V A    V      
Sbjct: 62  AGAIMVLFLFVIMLLNLEALPHPRQIDWGKVLAFVVTMIVLAQLVYVVALGLDVLPTFVA 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +       + + +G+ L T+Y  PL++ G +LL + IGA++L  R 
Sbjct: 122 TTEQAAVTGSAQALGRELLTRYIMPLQVIGILLLAATIGAVMLAKRR 168


>gi|153012162|ref|YP_001381677.1| NADH-plastoquinone oxidoreductase subunit 6 [Medicago truncatula]
          Length = 176

 Score =  110 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 10/173 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +            I+ S  VV + NPI+S FSL    V  + L++L  + FVA   L++
Sbjct: 6   TLHDFLLVFLGSGIILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILSNSHFVAASQLLI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ +  +F +M ++      +       +G     I+   + V     +  ++   +
Sbjct: 66  YVGAINILIIFAVMFMNSSEYYQDFNL--WTVGDGITLIVCTSIFVSLITIISDTSWYGI 123

Query: 122 SRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                          +  + IG  L T +  P E+   ILL+++IGAIV+  +
Sbjct: 124 IWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIVVARQ 176


>gi|71065159|ref|YP_263886.1| NADH dehydrogenase I, J subunit [Psychrobacter arcticus 273-4]
 gi|71038144|gb|AAZ18452.1| probable NADH dehydrogenase I, J subunit [Psychrobacter arcticus
           273-4]
          Length = 239

 Score =  110 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 79/144 (54%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +   FY  + +AI +S  VVT  NP++++ S+I + +  AG+F ++GA F   + +VVY 
Sbjct: 9   ELAGFYSLAAVAIFASLRVVTQANPVHAILSMIVSLLAIAGIFFVIGAPFAGALEIVVYA 68

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA++V F+F+IMML++ +   E  ++    G++ I      +I      M+     E + 
Sbjct: 69  GAIMVLFVFVIMMLNLGMRNDEREERWLDAGTWAIPTGLTIIIAVVLYAMIGLNHNEAAV 128

Query: 124 LVFKGNNVENIGKVLYTQYAYPLE 147
           +     + + +G VL+T+Y   +E
Sbjct: 129 IGGSTISAKAVGTVLFTKYIMLIE 152


>gi|226227059|ref|YP_002761165.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27]
 gi|226090250|dbj|BAH38695.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27]
          Length = 168

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 5/157 (3%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S +AI S+ L VT +NP+ +   L+      AGL+++L A FV  I ++VY GA++V F+
Sbjct: 13  SLLAIASALLFVTRKNPVPAALWLVNVMFALAGLYVMLDAPFVGTIQVLVYAGAIMVTFV 72

Query: 72  FIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           F++M+L++   EV++ R     LGS  +G+     ++ A    +   E   +R     N 
Sbjct: 73  FVVMLLNLGKTEVSDIRSLGTRLGSGVVGLALLANLLLALRQHIEVPEFSAAR----DNV 128

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           VE +   L+T Y    E++  +LL+++IGA+VL  R 
Sbjct: 129 VEPVAAALFTDYLVAFELTSLVLLVAVIGAVVLAKRR 165


>gi|124360819|gb|ABN08791.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Medicago
           truncatula]
          Length = 176

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 10/173 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +            I+ S  VV + NPI+S FSL    V  + L++L  + FVA   L++
Sbjct: 6   TLHDFLLVFLGSGIILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILSNSHFVAASQLLI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ +   F +M ++      +       +G     I+   + V     +  ++   +
Sbjct: 66  YVGAINILITFAVMFMNSSEYYQDFNL--WTVGDGITLIVCTSIFVSLITIISDTSWYGI 123

Query: 122 SRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                          +  + IG  L T +  P E+   ILL+++IGAIV+  +
Sbjct: 124 IWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIVVARQ 176


>gi|302035617|ref|YP_003795939.1| NADH-quinone oxidoreductase membrane subunit J [Candidatus
           Nitrospira defluvii]
 gi|300603681|emb|CBK40012.1| NADH-quinone oxidoreductase, membrane subunit J [Candidatus
           Nitrospira defluvii]
          Length = 174

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 91/173 (52%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  +FF  F+ ++I++  L V ++NP+    +L+   ++ +GLF+LL AEF+  + ++VY
Sbjct: 1   MAFVFFAYFAVVSIVAGILTVALKNPVQCGLALLALLLHVSGLFVLLNAEFLWAVQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V +LF++M+L++  +      K  +L +  +  LA  L +   +    S     +
Sbjct: 61  AGAILVLYLFVLMLLNLKTDDRYFHAKAPYLLAPAVIGLAYLLFLLVRSPFGGSRGDAST 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
             +    +   IG  +++ Y    EI G  L  +++GAIVL    +    R+D
Sbjct: 121 AAILINGDAHAIGIKMFSDYLLQFEIIGVFLTGAIVGAIVLAKTPKSIETRRD 173


>gi|289608459|emb|CBI60588.1| unnamed protein product [Sordaria macrospora]
          Length = 184

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/147 (40%), Positives = 88/147 (59%), Gaps = 3/147 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           +V+Q+L FYLF+ + + S+ L +T RNP++SV  LI AF NAAGL +L GAEF+AM+ ++
Sbjct: 38  LVIQTLAFYLFATIVVASAALTITSRNPVHSVLWLILAFFNAAGLMVLCGAEFIAMLLVI 97

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---A 117
           VYVGAV V FLF++MMLDID         R       + +L A  +V  +     +    
Sbjct: 98  VYVGAVAVLFLFVVMMLDIDFTELRAGFVRYLPAGLALAVLLAVELVVGAYAWTAARIDL 157

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAY 144
              ++       N+E IG++LY++Y Y
Sbjct: 158 AKRIAPTDVAVPNIEAIGRLLYSRYLY 184


>gi|156742069|ref|YP_001432198.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus
           castenholzii DSM 13941]
 gi|156233397|gb|ABU58180.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus
           castenholzii DSM 13941]
          Length = 217

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 2/165 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            + ++ F +F+ + + S+ L VTV+N +++   LI +F     L+LL+ AEF+ +  +++
Sbjct: 3   TLITVLFLIFAALILASAILTVTVKNIVHAALWLISSFFGVGALYLLMEAEFLGVAQVLI 62

Query: 62  YVGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEG 119
           YVGA+ +  LF IM+  D++         R ++       L   LIV       +     
Sbjct: 63  YVGALSILILFAIMLTRDLEGSQNRQLTPRWWIALIVPAALFGLLIVPTVMTHAWQLPPP 122

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
             +      +  + IG     +Y    E++  +L ++MIGAIV+ 
Sbjct: 123 PPTGQPPAISGAQQIGTAFMREYLLSFEVAAILLTVAMIGAIVIA 167


>gi|221633758|ref|YP_002522984.1| NADH dehydrogenase i subunit j [Thermomicrobium roseum DSM 5159]
 gi|221155857|gb|ACM04984.1| nadh dehydrogenase i chain j [Thermomicrobium roseum DSM 5159]
          Length = 241

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++   F L + ++++ +  VV  RNP++S   L+ +F+N A ++L+  AEF+A++ ++
Sbjct: 1   MSLEVAVFSLLALVSVLGALGVVLARNPVHSAIGLVLSFLNVAAIYLVARAEFLAVVQVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           VY GA+IV  +F+ M++  D   E    R  R   G      L AE+        V  A 
Sbjct: 61  VYAGAIIVLVVFVTMLVHPDDLPEFHGRRPLRLVTGLVLGAALLAEVAAAVLARGVRGAP 120

Query: 119 GELSR--LVFKGNNVENIGKVLYTQYAY 144
           G  +   +   G N   +G+VLY  Y  
Sbjct: 121 GPWTDEAVAAVGGNTRALGQVLYVDYML 148


>gi|194033199|ref|YP_002000538.1| NADH dehydrogenase subunit 6 [Brachypodium distachyon]
 gi|221272311|sp|B3TNA2|NU6C_BRADI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|193075607|gb|ACF08690.1| NADH dehydrogenase subunit 6 [Brachypodium distachyon]
          Length = 176

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
             K    +G  F  ++   ++      +  ++   +               NNV+ IG  
Sbjct: 90  --KNSWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+S+IGAI +  +
Sbjct: 148 LATDFYLPFELISIILLVSLIGAITMARQ 176


>gi|289548986|ref|YP_003473974.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis
           albus DSM 14484]
 gi|289182603|gb|ADC89847.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis
           albus DSM 14484]
          Length = 176

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 2/169 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ   F  FS  A++    VV + NPIY + SL+ + ++ AG+F + GAE V  + L++Y
Sbjct: 1   MQWAAFGAFSLSALLFGLGVVLLPNPIYVILSLLASLISIAGVFFVAGAELVGALQLLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120
             A+ VF++F++  +  +  + +    R  G L    + +L  ++IV     +  S +GE
Sbjct: 61  AVAITVFYVFVLTAVPWEKALKKDSHYRVEGALTFPLLLLLYGQVIVTFLLGVSVSPKGE 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +  ++    N E +G +L+++Y    E+   +LL+ M+GAI++  +  R
Sbjct: 121 IRNILKDLTNTEAVGVILFSKYFLAFELVSLVLLIGMLGAILIGRKEER 169


>gi|289474452|gb|ADC97839.1| NADH dehydrogenase subunit 6 [Muricea purpurea]
          Length = 155

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVL 113

Query: 154 LLSMIGAIVLML----------RHRRDIKRQDISKQLESN 183
           L++MIGAI+L              +    RQD+  Q+   
Sbjct: 114 LVAMIGAILLAKQPNSPSLYNSHGKSLRSRQDLFLQISRE 153


>gi|219674001|ref|YP_002456485.1| NADH-plastoquinone oxidoreductase subunit 6 [Trifolium
           subterraneum]
 gi|193788970|gb|ACF20566.1| NADH-plastoquinone oxidoreductase subunit 6 [Trifolium
           subterraneum]
          Length = 176

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 8/172 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +            I+ S  VV + NPI+S FSL    V  + L++L  + FVA   L++
Sbjct: 6   TLHDFLLVFLGSGLILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLI 65

Query: 62  YVGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           YVGA+ +  +F +M ++                       S F+ ++           + 
Sbjct: 66  YVGAINILIIFAVMFVNSCEYYQDFHFWTVGDGITLIVCTSIFVSLITIIPDTSWYGIIW 125

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +   ++        + + IG  L T +  P E+   ILL+++IGAIV+  +
Sbjct: 126 TTRPNQIIEQDLISTS-QQIGIHLSTDFFLPFELISIILLVALIGAIVVARQ 176


>gi|254457280|ref|ZP_05070708.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Campylobacterales bacterium GD 1]
 gi|207086072|gb|EDZ63356.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Campylobacterales bacterium GD 1]
          Length = 191

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 7/183 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FYLF+F+ I   ++ VT    +Y++ +L    +  +  F +LGA+F+  + +VVY
Sbjct: 2   FEAIAFYLFAFLTIAMFYITVTTSQALYALTALAAGMIFISAFFFILGADFLGAVQIVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+  + F +M  D   EV E    +  +      I A  +++  +  +V      L 
Sbjct: 62  SGAVMALYAFGMMFFDTTREVKEKNGNKYLVTGL-ATISAILVVLIFAAPIVGDNITALY 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +     N + IG VL+T+Y  P E++  +LL++M+  IVL        K+ D+S  L S
Sbjct: 121 PVTEGAGNTQEIGIVLFTKYLVPFELAAVMLLVAMVSGIVLA------GKKMDLSLTLMS 174

Query: 183 NPD 185
           + +
Sbjct: 175 DAE 177


>gi|159106917|ref|YP_001531335.1| NADH-plastoquinone oxidoreductase subunit 6 [Lolium perenne]
 gi|221272331|sp|A8Y9E0|NU6C_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|158934451|emb|CAO86029.1| NADH-plastoquinone oxidoreductase subunit 6 [Lolium perenne]
          Length = 176

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
             K    +G  F  I+   ++      +  ++   +               NNV+ IG  
Sbjct: 90  --KNYWTIGDGFTSIVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+S+IGAI +  +
Sbjct: 148 LATDFYLPFELISIILLVSLIGAITMARQ 176


>gi|145298715|ref|YP_001141556.1| NADH dehydrogenase subunit J [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851487|gb|ABO89808.1| NADH dehydrogenase I, J subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 183

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FY  + +A+ S+  V++  NP++++ +LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   ELAFYAAALVAVYSTLRVISTSNPMHALLNLIISIIAVAMIFFCLGASFAGALQVIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++    A+ +K    +      +L+  L+   +  ++    G+L   
Sbjct: 62  AIMVLFVFVVMMLNLGSSEAQEKKWLTPMTWGGPALLSLILLGFLAYGILGVTGGQLG-- 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E++  +LL  ++ A  L    +  
Sbjct: 120 -LSDVSAKEVGIALFGPYVLAVELASILLLAGLVTAYHLGREDKSG 164


>gi|189095616|ref|YP_001936200.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. BAL208-1]
 gi|148540946|gb|ABQ86195.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. BAL208-1]
          Length = 183

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 7/163 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4   LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IM++    +V                 +   +I    + +  S +   + ++ 
Sbjct: 64  AILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIG 116

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              N+  IG  LYT Y   + ++  +LL++M+GAI+L  +   
Sbjct: 117 SRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILLAKQPNT 159


>gi|269794082|ref|YP_003313537.1| NADH dehydrogenase subunit J [Sanguibacter keddieii DSM 10542]
 gi|269096267|gb|ACZ20703.1| NADH dehydrogenase subunit J [Sanguibacter keddieii DSM 10542]
          Length = 290

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 73/147 (49%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F+  + + ++++  ++  R  +++   ++F  V  A +++ L A F+ ++ +VVY 
Sbjct: 6   EAVLFWCLAPLMVVAALGLLFARKAVHATLCVVFVMVCLAVMYVALEAPFLGIVQIVVYT 65

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV++ FLF+IM++ +D   +     RG     ++  L    ++      V   EG    
Sbjct: 66  GAVMMLFLFVIMLVGVDASDSLVETIRGQRLVGWLLGLGLGAVLVGVILRVSFPEGIGLE 125

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISG 150
                 N   I +VL+  + + LE+ G
Sbjct: 126 AANAETNPVAIARVLFGDFVFNLEVVG 152


>gi|300114501|ref|YP_003761076.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Nitrosococcus watsonii C-113]
 gi|299540438|gb|ADJ28755.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           watsonii C-113]
          Length = 167

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FY+ + +A++S+ +V+T  N ++++  LI + +  A +F LLGA F A + +++Y G
Sbjct: 2   EITFYIAAIIAVVSTIMVITRLNAVHALLYLIVSLLAVALIFFLLGAPFAAALEVIIYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F+IMML++  E      +      +    + + +++    +++ +    LS  
Sbjct: 62  AIMVLFVFVIMMLNLGKESVAQENRWFTPYLWLGPGILSFVLLIELVYLLATDSSALSS- 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +    + +G  L+  Y   +E++  +LL  ++GA  L      +
Sbjct: 121 -AEMITPQQVGVALFGPYLLAVELAAMLLLTGLVGAYHLGREEPEE 165


>gi|139389697|ref|YP_001123253.1| NADH dehydrogenase ND6 [Arabis hirsuta]
 gi|221272309|sp|A4QK73|NU6C_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286452|dbj|BAF50078.1| NADH dehydrogenase ND6 [Arabis hirsuta]
          Length = 176

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+    VV + NPI+S FSL F  V  + L++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLIVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILANSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M ++ D E                 +    L    S  +  S  G + 
Sbjct: 67  VGAINVLIIFAVMFMN-DSEYFTDFNLWTVGDGITSLVCTTLLFSLISTILDTSWYGVIW 125

Query: 123 RLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                        +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 126 TTRLNQILEQDLISNSQQIGSHLSTDFFLPFELISIILLVALIGAISVARQ 176


>gi|14017626|ref|NP_114311.1| NADH dehydrogenase subunit 6 [Triticum aestivum]
 gi|118430356|ref|YP_874790.1| NADH-plastoquinone oxidoreductase subunit 6 [Agrostis stolonifera]
 gi|23821900|sp|Q95H44|NU6C_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272307|sp|A1EA62|NU6C_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|13928259|dbj|BAB47088.1| NADH dehydrogenase ND6 [Triticum aestivum]
 gi|118201265|gb|ABK79634.1| NADH-plastoquinone oxidoreductase subunit 6 [Agrostis stolonifera]
          Length = 176

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
             K    +G  F  ++   ++      +  ++   +               NNV+ IG  
Sbjct: 90  --KNYWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+S+IGAI +  +
Sbjct: 148 LATDFYLPFELISIILLVSLIGAITMARQ 176


>gi|317130738|ref|YP_004097020.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475686|gb|ADU32289.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 164

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + F + + +AI  S LV+ +R   + V S+ F F   AGL+ LLGA+F+ +I ++
Sbjct: 1   MNTQMIIFLILAILAIACSVLVLQLRRISHRVVSMAFVFFAIAGLYFLLGADFIGIIQII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GAV + F+F +MM +          +R      FIG+      +      +     +
Sbjct: 61  VYAGAVTILFIFGMMMTEHRNVTFSAHPRRAHRVLSFIGVATLLGFMLYGILGL-----D 115

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           L          E IG  LY  Y       GF+L  ++IGAIV+  + 
Sbjct: 116 LPASEPYEGTAEAIGLELYGHYVVAFLAMGFLLTAALIGAIVIARKE 162


>gi|227497689|ref|ZP_03927898.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
 gi|226832866|gb|EEH65249.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
          Length = 286

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F + + + ++    ++T +  + +  ++I   +  A L++   A F+ +  +VV
Sbjct: 20  TGETILFAVVALVTVVCGIGLLTAKRAVSAAVNMIAIMIALAVLYIANEAPFLGITQIVV 79

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV+   LF++M++ +  +  EP    G   + +I  L    +      +V+  +   
Sbjct: 80  YTGAVMTLVLFVVMLVGVGGD--EPVGSAGSPATKWIIALFGLGLAVLVAGVVWRTQFPD 137

Query: 122 SRLVFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +  + +G      ++  +L+ Q+   +E++G +L+++  GA+ L  R R   K
Sbjct: 138 AAGLDQGQGAAPADLATLLFGQHVVAMELTGLLLIVAATGALTLTHRQRIRAK 190


>gi|330339541|ref|YP_004376741.1| NADH dehydrogenase subunit 6 [Corallium konojoi]
 gi|328750582|dbj|BAK18843.1| NADH dehydrogenase subunit 6 [Corallium konojoi]
          Length = 184

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 16/186 (8%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F + S   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4   LFIMISLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IM++    +V                 +   +I    + +  S +   + ++ 
Sbjct: 64  AILFLFVIMLIQQPNKVDYQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIG 116

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR---------HRRDIKRQDIS 177
              N+  IG  LYT Y   + ++  +LL++M+GAI+L  +         H     RQD+ 
Sbjct: 117 SRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILLAKQPSTPSLYDSHVETRSRQDLF 176

Query: 178 KQLESN 183
            Q+   
Sbjct: 177 LQISRK 182


>gi|306486042|gb|ADM92668.1| NADH-plastoquinone oxidoreductase subunit 6 [Davidia involucrata]
          Length = 176

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
             +             S F+ ++   L       +  +   ++       +N + IG  L
Sbjct: 90  FHLWTVGDGVTSLVCTSIFVSLITTILDTSWYGIIWTTRSNQIMEQDL-ISNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E+   ILL+++IGAI +  +
Sbjct: 149 STDFFLPFELISIILLVALIGAIAIARQ 176


>gi|317050800|ref|YP_004111916.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Desulfurispirillum indicum S5]
 gi|316945884|gb|ADU65360.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfurispirillum indicum S5]
          Length = 172

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L FY+     + S   ++  RN + SV  L+  F+  AG+F LL AEF+ ++ ++VY G 
Sbjct: 8   LVFYMLVVTILASGLAMIFTRNIVASVTCLVGTFLGVAGIFFLLNAEFIGVVQIMVYAGG 67

Query: 66  VIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           + +  +F IM+ D  D EV  P+     L +   GIL   +++  S      ++ E    
Sbjct: 68  LSLLIIFAIMLTDPRDHEVDRPKSGNVMLAAAVSGILFIMMVIAISTAQWSFSDAEPLTT 127

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                    IG   +T Y  P  ++  +L +++ GAIVL  +   D K
Sbjct: 128 QPAV----YIGIQYFTNYIVPFYLAAILLSMALTGAIVLAKKEGEDEK 171


>gi|192293782|ref|YP_001994421.1| NADH dehydrogenase subunit 6 [Acanella eburnea]
 gi|148964837|gb|ABR19859.1| NADH dehydrogenase subunit 6 [Acanella eburnea]
          Length = 183

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 7/163 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4   LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IM++    +V                 +   +I    + +  S +   + ++ 
Sbjct: 64  AILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIG 116

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              N+  IG  LYT Y   + ++  +LL +M+GAI+L  +   
Sbjct: 117 SRTNIXAIGSHLYTTYYELVLVASLVLLXAMVGAILLAKQPNT 159


>gi|197121682|ref|YP_002133633.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. K]
 gi|220916478|ref|YP_002491782.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196171531|gb|ACG72504.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. K]
 gi|219954332|gb|ACL64716.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 211

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + FY+ + + +  +  V   RN +YS F L+ A + A  L++LL A+FVA+  L++Y
Sbjct: 47  LPDVLFYVLAVLTVAGAAGVALSRNILYSTFGLLTALLGAGALYVLLSADFVAVTQLLIY 106

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G V+V  LF +M+ +   E+       G  G F + + AA +++  +         +  
Sbjct: 107 IGGVLVLILFAVMLTNRITEINVSNTSFGLFGGFLLFVSAAPVLLAVALL----TPWQAG 162

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                    + IG    +++  P E++  +LL +++GAIV+  + 
Sbjct: 163 PAAPLAPTTQAIGDAFLSRWLLPFEVASLVLLSTLVGAIVIARKE 207


>gi|238920559|ref|YP_002934074.1| NADH-quinone oxidoreductase subunit j [Edwardsiella ictaluri
           93-146]
 gi|238870128|gb|ACR69839.1| NADH-quinone oxidoreductase subunit j [Edwardsiella ictaluri
           93-146]
          Length = 190

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + +A++++  V+T  NP++++  LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   EFAFYAAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  +     G +    L + +++    + + + +G  +  
Sbjct: 62  AIMVLFVFVVMMLNLGHSVVEQERAWLRPGVWIGPALLSLILLAVVLYAISTLQGGFTD- 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E+   +LL  ++ A  +   H   
Sbjct: 121 -GRAVDAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHHPG 165


>gi|154148356|ref|YP_001405798.1| NADH dehydrogenase subunit J [Campylobacter hominis ATCC BAA-381]
 gi|153804365|gb|ABS51372.1| NADH-quinone oxidoreductase, j subunit [Campylobacter hominis ATCC
           BAA-381]
          Length = 175

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            + + FY FS +++    + V  +N +Y++ +L    +  +GLF  LGAEF+ ++ ++VY
Sbjct: 2   FEIISFYFFSVLSLGLFAVSVFSKNVLYAMSALAGGMIFISGLFFTLGAEFLGVVQIMVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAVIV + F +M  + + +V E ++ +       I      +I  A    + S +    
Sbjct: 62  TGAVIVLYGFSMMFFNANKDVKEAKENKIIYSLAVISAFLLVMIFVA---PILSDKISAY 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            ++ + +N+E IG V++T+Y    E+   +LL++MI  IVL+ +
Sbjct: 119 PIIKELDNIEAIGLVIFTKYLIVFELVAIMLLVAMICGIVLVHK 162


>gi|118430440|ref|YP_874705.1| NADH-plastoquinone oxidoreductase subunit 6 [Hordeum vulgare subsp.
           vulgare]
 gi|126302578|sp|O98693|NU6C_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|118201094|gb|ABK79465.1| NADH-plastoquinone oxidoreductase subunit 6 [Hordeum vulgare subsp.
           vulgare]
          Length = 176

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
             K    +G  F  ++    +      +  ++   +               NNV+ IG  
Sbjct: 90  --KNYWTIGDGFTSLVCITFVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+S+IGAI +  +
Sbjct: 148 LATDFYLPFELISIILLVSLIGAITMARQ 176


>gi|256831788|ref|YP_003160515.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Jonesia
           denitrificans DSM 20603]
 gi|256685319|gb|ACV08212.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Jonesia
           denitrificans DSM 20603]
          Length = 282

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F+  + + ++++  ++  R  +++  S++F  ++ A L++   A F+ +  +VV
Sbjct: 4   TAEAVLFWSLAPLMVLAAMGLLFARKAVHATISVVFVMISLAVLYVANEAPFLGIAQVVV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEG 119
           Y GA+++ FLF+IM++ +    +     RG  F+G  F G LA  L+       V    G
Sbjct: 64  YTGAIMMLFLFVIMLVGVGASDSLVETVRGQRFIGVLFAGGLAIILLAFLGRLTVGPGVG 123

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISG 150
             + +    +N   I +VL   + +PLE+ G
Sbjct: 124 HEATVA---DNPTAIARVLLGNFVFPLELVG 151


>gi|56791558|gb|AAW30317.1| NADH dehydrogenase subunit 6 [Eichhornia crassipes]
          Length = 159

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 11/139 (7%)

Query: 53  FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN 111
           F AMI  VV++GA+ V FLF++MM +I I        R    S  IG IL  E+     N
Sbjct: 21  FSAMIFPVVHIGAIAVSFLFVVMMFNIQIAEIHEXVLRYLPVSGIIGLILWWEMFFILDN 80

Query: 112 FMVFSAEGELSRL----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
             +       +            V    N+E +G +LYT Y+    +   ILL++MIGAI
Sbjct: 81  ETIPLLPTHRNTTSLRYTVHAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAI 140

Query: 162 VLMLRHRRDIKRQDISKQL 180
           VL +     +KRQD+ ++ 
Sbjct: 141 VLTMHRTTKVKRQDVFRRN 159


>gi|290790821|gb|ADD63078.1| NADH-plastoquinone oxidoreductase subunit 6 [Potamophila
           parviflora]
          Length = 176

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++LL + FVA+  L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89

Query: 86  PRKK---RGFLGSFFIGILAAELIVCA-SNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139
                   GF     I I  + +     +++         +++V +G  NNV+ IG  L 
Sbjct: 90  KNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLA 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+S+IGAI +  +
Sbjct: 150 TDFYLPFELISIILLVSLIGAITMARQ 176


>gi|290489864|gb|ADD31339.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Bulnesia
           arborea]
          Length = 176

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ S  VV   N +YS FSL       + L++   + FVA   L++Y
Sbjct: 7   IHDFILVFLGSGLILGSLGVVLFSNSMYSAFSLGLVLFCISLLYISSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPR---KKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VGA+ V  +F +M ++             + G      I I  + +              
Sbjct: 67  VGAINVLIIFAVMFMNNSEYSKNFNILTFRNGITSLVCISIFFSLVTTILDTSWYSIIWT 126

Query: 120 ELSRLVFK---GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             S  + +    NN + IG  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 127 TRSNHIIEQELINNSQQIGIHLSTDFFLPFELISIILLVSLIGAIAMARQ 176


>gi|296124099|ref|YP_003631877.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces
           limnophilus DSM 3776]
 gi|296016439|gb|ADG69678.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces
           limnophilus DSM 3776]
          Length = 239

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 90/176 (51%), Gaps = 11/176 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++ L FY+ +  A++   L+ T RNP+Y+      A +   GLF++  A F+A +T++VY
Sbjct: 59  VRDLLFYMAAGTAVLGGLLMTTQRNPVYAALWFAVATLGVCGLFVINSAPFLAAVTIIVY 118

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGE 120
            GA++V F+F+IM+   +      R  +    +  +G  ++   L+     F   S+   
Sbjct: 119 AGAIVVTFVFVIMLAQQEQGSGYDRIPQQPFLATVLGCLLVGTMLLGIEKTFGPESSRLS 178

Query: 121 LSRLVFKGNNV---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           + R     +++           +G+ L+T Y + +E++G +LL++ IGAI +  R 
Sbjct: 179 VDRTALHVSSLPVENDLGSPGGVGRSLFTDYLFAVELAGTVLLVATIGAIAIAPRR 234


>gi|237752483|ref|ZP_04582963.1| NADH oxidoreductase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375972|gb|EEO26063.1| NADH oxidoreductase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 184

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 2/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FY+F  + +    +VVT +N +Y++ +L    +  +  F LLGAEF+ ++ +VVY
Sbjct: 2   FEAIAFYVFCALTLAMFLVVVTTQNILYALSALAAGMMFVSAFFFLLGAEFLGVVQIVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GAVI  + F +M  D      E  +     F  S    +L   ++V        ++   
Sbjct: 62  TGAVIALYAFAMMFFDAQKLENEKVQSPKMLFFLSGMGALLLVLIVVAPVIAENLASLQA 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
            + +  +  NV+ +G VL+T++  P EI+  +LL++MI  IVL 
Sbjct: 122 TTPIKEEIGNVQMVGYVLFTKFLIPFEIAAVMLLVAMIAGIVLA 165


>gi|170784789|ref|YP_001718705.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum]
 gi|170784796|ref|YP_001718712.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum]
 gi|221272393|sp|A9QC80|NU6C_TRACE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|156598841|gb|ABU85673.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum]
 gi|157267537|gb|ABV26530.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum]
 gi|157267544|gb|ABV26537.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum]
          Length = 176

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VV + NPIYS FSL    V  + L++L  + F+A   L++YVGA+ V  +F +M L+   
Sbjct: 26  VVLLPNPIYSAFSLGLVLVCISLLYILSNSHFLAAAQLLIYVGAINVLIIFAVMFLNGSE 85

Query: 82  --EVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAEGELSRLVFKG--NNVENIG 135
             +   P      + S     L A LI     +++       + ++++ +   NN + IG
Sbjct: 86  YYKDLNPWTVGDGVTSVVCTSLFASLITTIPDTSWYGIIWTTKSNQIIEQDLINNSQEIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             L T +  P E+   ILL+++IGAI +  +
Sbjct: 146 IHLSTDFLIPFELISIILLVALIGAIAVARQ 176


>gi|13518395|ref|NP_084754.1| NADH dehydrogenase subunit 6 [Oenothera elata subsp. hookeri]
 gi|169142762|ref|YP_001687189.1| NADH dehydrogenase subunit 6 [Oenothera argillicola]
 gi|169142912|ref|YP_001687335.1| NADH dehydrogenase subunit 6 [Oenothera glazioviana]
 gi|169142997|ref|YP_001687419.1| NADH dehydrogenase subunit 6 [Oenothera biennis]
 gi|169143083|ref|YP_001687503.1| NADH dehydrogenase subunit 6 [Oenothera parviflora]
 gi|22256938|sp|Q9MTH9|NU6C_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272335|sp|B0Z4S8|NU6C_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272336|sp|B0Z512|NU6C_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272337|sp|B0Z596|NU6C_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272338|sp|B0Z5I0|NU6C_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|6723812|emb|CAB67223.1| NADH dehydrogenase subunit 6 [Oenothera elata subsp. hookeri]
 gi|159793000|gb|ABW98756.1| NADH dehydrogenase subunit 6 [Oenothera argillicola]
 gi|159793170|gb|ABW98924.1| NADH dehydrogenase subunit 6 [Oenothera biennis]
 gi|159895524|gb|ABX10089.1| NADH dehydrogenase subunit 6 [Oenothera glazioviana]
 gi|159895609|gb|ABX10173.1| NADH dehydrogenase subunit 6 [Oenothera parviflora]
          Length = 176

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+    VV + NPI+S FSL    V  +  F L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  LF +M ++       + +             S FI ++   L       +  
Sbjct: 67  VGAINVLILFAVMFMNGSEYSKDLTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +   ++      G N + IG  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 127 TKSNQIIEQDLIG-NSQQIGIHLSTDFFLPFELISIILLVSLIGAIAVARQ 176


>gi|117620263|ref|YP_856310.1| NADH dehydrogenase subunit J [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561670|gb|ABK38618.1| NADH-quinone oxidoreductase chain j [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 182

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FY  + +AI S+  V++  NP++++ +LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   ELAFYAAALVAIYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGASFAGALQVIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     + +           G+L+  L+   +  ++    GEL   
Sbjct: 62  AIMVLFVFVVMMLNLGSAQDQEKNWLTPTTWVGPGLLSLILLGFLAYGILGVTGGELG-- 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + + +G  L+  Y   +E++  +LL  ++ A  L    +  
Sbjct: 120 -LTDVSAKAVGIALFGPYVLAVELASILLLAGLVTAYHLGREDKSG 164


>gi|4150871|emb|CAA09814.1| ndhG protein [Hordeum vulgare subsp. vulgare]
          Length = 176

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +      F+ ++ +  VV + NPIYS FSL    V  +  + LL + FVA+  L++Y
Sbjct: 7   IHEILMLFGGFILLLGALGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M ++      +  K    +G  F  ++    +      +  ++   + 
Sbjct: 67  VGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTSLVCITFVFSLMTTIPDTSWYGIL 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         NNV+ IG  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 125 WTTRSNQIVEQGLINNVQQIGIHLATDFYLPFELISIILLVSLIGAITMARQ 176


>gi|297563976|ref|YP_003682949.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848425|gb|ADH70443.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 349

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 81/183 (44%), Gaps = 4/183 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  F++   + ++ +  VV  R  ++S  S+    V  A  + +  A F+ ++ +VVY 
Sbjct: 27  EATAFWILGAVVLLGALGVVFSRKAVHSAMSMALTMVGLAIFYGINAAPFLMVVQIVVYT 86

Query: 64  GAVIVFFLFIIMMLDIDIEVA--EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV++ FLF++M++ +    +  E    +  + +         L    +   V    G  
Sbjct: 87  GAVLMLFLFVLMLIGVSSADSLVETLSGQRLMTAVVALCFVGALTTGITRIAVGDPVGLT 146

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
                 G  +  I   L  +Y    E +G +L+ +++GA+VL    R   K++   +++ 
Sbjct: 147 EGAAAAGGTIPWIAGELLLRYVVAFEATGALLITAVLGAMVLAHTART--KKRRTQREIA 204

Query: 182 SNP 184
            + 
Sbjct: 205 EDR 207


>gi|219669762|ref|YP_002460197.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfitobacterium hafniense DCB-2]
 gi|219540022|gb|ACL21761.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfitobacterium hafniense DCB-2]
          Length = 170

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 90/165 (54%), Gaps = 4/165 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            M ++ F++F+ +A+ S++ VVT +N ++S F L  +F   A L++LL AE++A + L+V
Sbjct: 3   TMATIVFFIFAIIAVASAWGVVTSKNIVHSAFFLALSFAGVAVLYVLLNAEYLAAVQLLV 62

Query: 62  YVGAVIVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           Y GA+ +  +F +M+ L  D+  + P  K+   G+    ++    IV A   +  S    
Sbjct: 63  YAGAISIMVIFAVMLTLRGDVAESSPVTKKWTQGALVSALVF---IVLALVILTNSDWRI 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
           L+     G     + K+L + Y  P E +  ++ +++IGA+++  
Sbjct: 120 LAMPALAGGTTVELSKLLLSWYMVPFEAAAILITVALIGAVIIAK 164


>gi|297585411|ref|YP_003701191.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           selenitireducens MLS10]
 gi|297143868|gb|ADI00626.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           selenitireducens MLS10]
          Length = 165

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 4/167 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q +FF + + +AI  + +++ +    + V S+ F+F   AGL+ LLGAEF+ +I ++
Sbjct: 1   MTAQMIFFTILALIAITGAVMMMLLTTISHRVVSMWFSFFAVAGLYFLLGAEFIGIIQIM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGA+ + F+F +MM D      E   +        IG ++A  ++    + +FS +  
Sbjct: 61  VYVGAITILFVFGMMMTDHKTVSFEKDPR---TAHNVIGTISAVGVLGILLYGIFSMD-L 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                 +   V  IG  LY  Y        F+L  ++IGAIV+  + 
Sbjct: 117 PGNAQPEVTTVHAIGMDLYGHYFVAFIAVAFLLTAALIGAIVIARKE 163


>gi|289066874|ref|YP_003434392.1| NADH-plastoquinone oxidoreductase subunit 6 [Vigna radiata]
 gi|259020061|gb|ACV90259.1| NADH-plastoquinone oxidoreductase subunit 6 [Vigna radiata]
          Length = 176

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 8/172 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +            I+ S  VV   NPI+S FSL    V  +  ++L  + FVA   L++
Sbjct: 6   SLHDFILIFLGSGLILGSLGVVFFTNPIFSAFSLGLVLVCVSLFYILSNSHFVAASQLLI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMV 114
           YVGA+ V  +F +M ++        R              S F+  +   L       + 
Sbjct: 66  YVGAINVLIIFAVMFMNGSDYYQNFRVWTVGDGITLMVCTSIFLSQITTILDTSWHGIIW 125

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +   ++        + + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 126 TTRPNQILEQDLISTS-QQIGIHLSTDFFLPFELISIILLVALIGAIFVARQ 176


>gi|257459157|ref|ZP_05624276.1| NADH-quinone oxidoreductase, j subunit [Campylobacter gracilis
           RM3268]
 gi|257443542|gb|EEV18666.1| NADH-quinone oxidoreductase, j subunit [Campylobacter gracilis
           RM3268]
          Length = 175

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q+L FY FS + +    + V  +N +Y++ +L    V  +G F LL AEF+ ++ ++VY
Sbjct: 2   IQTLAFYFFSAVCLALFGISVFSKNVLYALSALAGGMVFMSGFFFLLDAEFLGVVQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAVIV + F +M L  D  V EP+K      +    I    +I+     +   A    +
Sbjct: 62  TGAVIVLYGFALMFLGADKNVNEPKKGARLFFALSGVIAFLLVIIALGAVV---ANNVET 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +   ++ E +G +++T+Y    E++  +LL++MI AIVL  + 
Sbjct: 119 LKILNTDDTEALGMIIFTKYLAIFELAAVMLLVAMICAIVLAHKQ 163


>gi|227535962|ref|ZP_03966011.1| possible NADH dehydrogenase (quinone) [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300771668|ref|ZP_07081543.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227244205|gb|EEI94220.1| possible NADH dehydrogenase (quinone) [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300761657|gb|EFK58478.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 167

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 89/165 (53%), Gaps = 2/165 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  +F++I  + + +  +NP++SV  L+  F      ++LL A+F+A++  +VY+GA+
Sbjct: 3   IFYFVAFLSIFFALMTIFTKNPVHSVLYLVITFFTFTVHYILLNAQFLAVVNFIVYMGAI 62

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V FLF++M+L+++ E      + G +           L+V   +  +   +        
Sbjct: 63  MVLFLFVLMLLNLNKESEP--MRSGVVKVMGAVAGMCLLVVVLGSLRIIEIDNGDVVAQP 120

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
               V+ +G+VL+ ++  P EIS  +LL +M+GA++L  +  + +
Sbjct: 121 SIGLVKQLGEVLFDKFLLPFEISSILLLTAMVGAVLLAKKDTKKV 165


>gi|289065142|ref|YP_003434028.1| NADH-plastoquinone oxidoreductase subunit 6 [Typha latifolia]
 gi|281371825|gb|ADA63752.1| NADH-plastoquinone oxidoreductase subunit 6 [Typha latifolia]
          Length = 176

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  A FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYSKD 89

Query: 86  PRKKRGFLG--SFFIGILAAELIVCA--SNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139
                   G  S     +   LI     +++       + ++++ +   NNV+ IG  L 
Sbjct: 90  SYLWTIGDGGTSLICTTILFSLITTIPDTSWYGIIWTTKSNQIIEQDLINNVQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+S+IGAI +  +
Sbjct: 150 TDFYLPFELVSIILLVSLIGAITMARQ 176


>gi|330339526|ref|YP_004376727.1| NADH dehydrogenase subunit 6 [Paracorallium japonicum]
 gi|328750567|dbj|BAK18829.1| NADH dehydrogenase subunit 6 [Paracorallium japonicum]
          Length = 184

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 16/186 (8%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F + S   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4   LFIIISLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + FLF+IM++       +P K      S F+ +    +I    + +  S +   + ++ 
Sbjct: 64  AILFLFVIMLIQ------QPNKVYYQDHSHFLPV-GLSVIFLFYSLLTNSPKYISNPVIG 116

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI---------KRQDIS 177
              N+  IG  LYT Y   + ++  +LL++M+GAI+L  +               RQD+ 
Sbjct: 117 SRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILLAKQPNTPSLYDSHVEIRSRQDLF 176

Query: 178 KQLESN 183
            Q+   
Sbjct: 177 LQISRK 182


>gi|289474437|gb|ADC97829.1| NADH dehydrogenase subunit 6 [Alaskagorgia sp. USNM 1115602]
          Length = 155

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 17/160 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVL 113

Query: 154 LLSMIGAIVLML----------RHRRDIKRQDISKQLESN 183
           L++MIGAI+L                   RQD+  Q+   
Sbjct: 114 LVAMIGAILLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 153


>gi|255533954|ref|YP_003094326.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter
           heparinus DSM 2366]
 gi|255346938|gb|ACU06264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter
           heparinus DSM 2366]
          Length = 165

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 2/166 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FY  + +++I S LV+  +NP++SV  LI  F      ++LL A+F+A++  +VY
Sbjct: 1   MGTSVFYFVAALSVIFSLLVIFSKNPVHSVLYLIVTFFTFTVHYVLLNAQFLAVVNFIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +GA++V FLF++M+L+++ +      K G +    +      L+  A      +    + 
Sbjct: 61  MGAIMVLFLFVLMLLNLNKDNEP--LKSGLVKVVGVIAGCCLLVTLAGALKATALSDPVV 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                   V+++GK L+  +  P E+   +LL +M+GAI+L  + +
Sbjct: 119 LRNPNLGLVKSLGKELFGPFMLPFELCSILLLSAMVGAILLTKKEK 164


>gi|83815364|ref|YP_445567.1| NADH dehydrogenase i, j subunit [Salinibacter ruber DSM 13855]
 gi|83756758|gb|ABC44871.1| NADH dehydrogenase i, j subunit [Salinibacter ruber DSM 13855]
          Length = 207

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 92/162 (56%), Gaps = 1/162 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F+L + +A+ ++  ++  RNP+ S   L+      AGL+L L A F+ +I ++VY GA+
Sbjct: 44  MFFLLATVAVAAALGMIIARNPVSSALWLVLNLFCIAGLYLTLNASFIGVIQILVYAGAI 103

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRLV 125
           +V FLF+IM+L++         +   +G F +G +L ++L+   +       +   +   
Sbjct: 104 MVLFLFVIMLLNLSALPELEEIEWASIGGFAVGLVLLSQLLYVVALQFELGVDPIGAEAA 163

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +  +  ++G++L+T+YA  L+++G +LL + +GA++L  R 
Sbjct: 164 AEAGSAASLGEILFTRYALHLQVAGILLLAATVGAVLLAQRR 205


>gi|114329710|ref|YP_740530.1| NADH-plastoquinone oxidoreductase subunit 6 [Citrus sinensis]
 gi|122166138|sp|Q09MC3|NU6C_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|113952676|gb|ABI49074.1| NADH-plastoquinone oxidoreductase subunit 6 [Citrus sinensis]
          Length = 178

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 8/150 (5%)

Query: 25  VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84
             NPIYS FSL    V  +  ++L  + FVA   L++YVGAV V  +F +M ++      
Sbjct: 29  FTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSK 88

Query: 85  EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGK 136
           + +     +G     ++   +       ++ ++   +               +N + IG 
Sbjct: 89  DFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGI 148

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            L T +  P E+   ILL+++IGAI +  +
Sbjct: 149 HLSTDFFLPFELVSIILLVALIGAIAVARQ 178


>gi|255535804|ref|YP_003096175.1| NADH-ubiquinone oxidoreductase chain J [Flavobacteriaceae bacterium
           3519-10]
 gi|255342000|gb|ACU08113.1| NADH-ubiquinone oxidoreductase chain J [Flavobacteriaceae bacterium
           3519-10]
          Length = 164

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F+  + +A+ S+   V  RNP+Y++ +LI  F + A +++LL A+F+ ++ ++VY
Sbjct: 1   MEQVIFFSVAAIALASAVYFVIARNPLYAILALIVTFFSIAAMYILLNAQFLGIVQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FL+I+MML+++   A+  KK+       +       I     +         +
Sbjct: 61  AGAIMVLFLYILMMLNLNR--ADESKKQNLTKFIGVFAACILFIGLLGAYKGLGTGTYGT 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +       +N+G++L+ +Y  P E++  ++L  ++GA+++  +
Sbjct: 119 GVDSSIGLTKNLGRLLFNEYVLPFELASILILAGIVGAVLIGKK 162


>gi|34500967|ref|NP_904152.1| NADH dehydrogenase subunit 6 [Amborella trichopoda]
 gi|75275903|sp|Q70XW1|NU6C_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|34481682|emb|CAD45159.1| NADH dehydrogenase ND6 subunit [Amborella trichopoda]
          Length = 177

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 8/172 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +         I+ S  VV + NPIYS FS     V  +   +L  + FVA   L++Y
Sbjct: 7   IHDILLVSLGSGIILGSLGVVLLTNPIYSAFSSGLVLVRISLFHILSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  +F +M +       +  +             S    ++A  L       +  
Sbjct: 67  VGAINVLIIFAVMFMNGSEYYNNFHLWTVGDGISSVVCTSILFSLIATILDTSWYGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +   ++       +NV+ IG  L T +  P E+   ILL++++GAI +    
Sbjct: 127 TRSNQIIEQDLT-SNVQQIGIHLSTDFFLPFELISIILLVALVGAIAMARAE 177


>gi|298346127|ref|YP_003718814.1| NADH dehydrogenase subunit J [Mobiluncus curtisii ATCC 43063]
 gi|304390113|ref|ZP_07372067.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236188|gb|ADI67320.1| NADH dehydrogenase subunit J [Mobiluncus curtisii ATCC 43063]
 gi|304326595|gb|EFL93839.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 324

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q++F    S +A+I++  V      +++   ++   V  AG++  +GAEF+  + +VV
Sbjct: 16  TGQTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF+IM++ +    +    K G + +  + ++A  ++   +     +  G  
Sbjct: 76  YTGAIMMMFLFVIMLVGVQAVDSPRDSKVGTVAAAVLLVVAFGIMAIVAAVNT-TVNGAP 134

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +R     N V    +V+ T YA PLE+   +L+++ +GA+ L    
Sbjct: 135 ARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSLTHSE 179


>gi|256422827|ref|YP_003123480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga
           pinensis DSM 2588]
 gi|256037735|gb|ACU61279.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga
           pinensis DSM 2588]
          Length = 172

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 90/168 (53%), Gaps = 2/168 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FYL S +AII++ +V+T  +PI+++  L+ +F+  A +FL LGA F A + ++VY GA
Sbjct: 3   ILFYLSSAVAIIATMMVITRYHPIHALLYLVVSFLAIAMVFLSLGAPFAAALEVIVYAGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F+F++MML++  E A   K       +    +   +++   + ++ +       + 
Sbjct: 63  IMVLFIFVVMMLNLGKETAAQEKDWLRPAVWIGPGILTLILLMEMSILLLAPP--QRDVA 120

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                   +   LY +Y   +E+ GF+L   ++GA  +  + ++ + R
Sbjct: 121 MAVVTPRQVALSLYGEYIIAVELIGFLLTTGIVGAAHIGKQKKKSLHR 168


>gi|313156921|gb|EFR56359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alistipes sp.
           HGB5]
          Length = 169

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++ + F + +    +S+ L VT +  + +   L+F     AG++  L   F+  + L+
Sbjct: 3   ITLELIVFTVLAVFTAVSALLAVTTKRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y G + V ++F I++     + +E  K   F    F+G+ A  L +    ++    +  
Sbjct: 63  IYAGGITVLYVFSILLTSSQGDKSEDLKGYKF----FVGLAATLLSLGVCLYVTLGHDFR 118

Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
            S  V    +V+ IG  L +     Y  P E+   +LL  ++G I++  + 
Sbjct: 119 PSHFVHGELHVQTIGHALMSSGKYGYVLPFEVISILLLACIVGGILIARKR 169


>gi|330830053|ref|YP_004393005.1| NADH dehydrogenase I subunit J [Aeromonas veronii B565]
 gi|328805189|gb|AEB50388.1| NADH dehydrogenase I, J subunit [Aeromonas veronii B565]
          Length = 183

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FY  + +AI S+  V++  NP++++ +LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   ELAFYASALVAIYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGAAFAGALQVIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++    A+ +K    +      +L+  L+   ++ ++    G +   
Sbjct: 62  AIMVLFVFVVMMLNLGSAQAQEKKWLTPMTWGGPALLSLILLGFLAHGILGVTGGLIG-- 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                  + +G  L+  Y   +E++  +LL  ++ A  L    +  
Sbjct: 120 -VTEVTAKQVGVELFGPYVLAVELASILLLAGLVTAYHLGREEKSG 164


>gi|226327873|ref|ZP_03803391.1| hypothetical protein PROPEN_01754 [Proteus penneri ATCC 35198]
 gi|225203577|gb|EEG85931.1| hypothetical protein PROPEN_01754 [Proteus penneri ATCC 35198]
          Length = 277

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  L+ + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYIAGLIAILATLRVITHTNPVHALLYLVISLIALSVVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSR 123
           A++V F+F++MML++   V +  +K      +    L + +++    + + S   GE++ 
Sbjct: 62  AIMVLFVFVVMMLNLGKSVVDQERKWLQPKFWIGPALLSLMLLVVLIYAISSVTHGEITG 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
            +      + +G  L+  Y   +E++  +LL  +I A
Sbjct: 122 EIIGA---KEVGISLFGPYILAVELASVLLLSGLIVA 155


>gi|114177209|gb|ABI53762.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ10101]
          Length = 235

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 100/223 (44%), Gaps = 60/223 (26%)

Query: 4   QSLFFYLFSFMAIISSFLVVT---------------VRNPIYSVFSLIFAFVNAAGLFLL 48
           + + F + S + +I++ + +                  N + SVF LI  F+ ++GLF++
Sbjct: 8   EDILFIILSSITVIAAIMTIRGGIGNPTTTAVTPTNTNNFLTSVFWLILTFIGSSGLFIV 67

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF----LGSFFIGILAAE 104
           LG EF+ +I L+VYVGA+ + FLF+IMM+  + E  +  +        +G    GILAAE
Sbjct: 68  LGMEFLGLIFLIVYVGAICIIFLFVIMMIPGEKERKKGEETGRIGTPAIGILIGGILAAE 127

Query: 105 LIVCASNFMVFSAEGE-----------------------------------------LSR 123
           L     + ++ + E                                           L+ 
Sbjct: 128 LASAVPDSIIKNYELTNILSDRNRDKSGLIGSEKESITTGIKNNIETGYPYDYFDYFLTL 187

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
               G N+E IGKVLY  Y Y   +  FILL++MIGAIVL L+
Sbjct: 188 NGSGGTNMEAIGKVLYINYYYAFILVSFILLVAMIGAIVLGLQ 230


>gi|330850678|ref|YP_004376559.1| NADH-plastoquinone oxidoreductase subunit 6 [Ptilidium
           pulcherrimum]
 gi|302024807|gb|ADK89653.1| NADH-plastoquinone oxidoreductase subunit 6 [Ptilidium
           pulcherrimum]
          Length = 206

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 14/182 (7%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            I+ S  VV + + +YS F L F F   A L+LLL ++FVA   +++YVGA+ V  +F +
Sbjct: 19  LILGSLGVVLLNDIVYSAFLLGFVFACVALLYLLLDSDFVAAAQVLIYVGAINVLIVFAV 78

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL--------SRLVF 126
           M+++ +  +         +G      +   + +  +N +  ++  ++        +  + 
Sbjct: 79  MLINKNNPII--FFLVWTIGDGITSAICTSIFLLLNNTISNTSWSKIYLVAQLNKNTELI 136

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186
              N+  IG  L T++  P E+   ILL+++IGAI L     R  +  ++ +++  N +N
Sbjct: 137 TTENIRRIGLELLTKFLIPFELMSIILLIALIGAITLA----RGEQVINLEEEVLRNKNN 192

Query: 187 SI 188
           SI
Sbjct: 193 SI 194


>gi|315657370|ref|ZP_07910252.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491842|gb|EFU81451.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 324

 Score =  107 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q++F    S +A+I++  V      +++   ++   V  AG++  +GAEF+  + +VV
Sbjct: 16  TGQTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF+IM++ +    +    K G + +  + ++A  ++   +     +  G  
Sbjct: 76  YTGAIMMMFLFVIMLVGVQAVDSPRDSKVGTVAAAVLLVVAFGIMAIVAAVNT-TVNGAP 134

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +R     N V    +V+ T YA PLE+   +L+++ +GA+ L    
Sbjct: 135 ARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSLTHSE 179


>gi|162452498|ref|YP_001614865.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So
           ce 56']
 gi|161163080|emb|CAN94385.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So
           ce 56']
          Length = 212

 Score =  107 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           + +  FF L S + ++     V  RNPI     L+ + V  AGL+L+L AEF+A I ++V
Sbjct: 3   IFEFAFFGLASLLVLLGGLATVAARNPIRGAMGLLTSIVGIAGLYLMLSAEFLAAIQILV 62

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF+IM+L      +    +         G+L A  I   +     S  G L
Sbjct: 63  YAGAIVILFLFVIMLLGP-SATSPRDARTAVPRYVGAGVLGASSIGALALVASASKPGVL 121

Query: 122 SRLVFKGN--NVENIGKVLYTQYAYPLEISGFILL 154
           +      +   +E +G  L+T+   P E+SG +LL
Sbjct: 122 AVPAAPESLGTIEGLGHELFTKGIVPFELSGALLL 156


>gi|238927263|ref|ZP_04659023.1| NADH dehydrogenase (ubiquinone) subunit J [Selenomonas flueggei
           ATCC 43531]
 gi|304437253|ref|ZP_07397213.1| NADH-quinone oxidoreductase subunit J [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|238884850|gb|EEQ48488.1| NADH dehydrogenase (ubiquinone) subunit J [Selenomonas flueggei
           ATCC 43531]
 gi|304369745|gb|EFM23410.1| NADH-quinone oxidoreductase subunit J [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 164

 Score =  107 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S  FY  + + II +  VV   N ++S   L+ +F+  A ++  +GAEF+  + L+VY G
Sbjct: 2   SFIFYFLAAVTIIGALGVVLSPNVVHSALFLVLSFIGVAAIYFYIGAEFLGAVQLMVYSG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV V  +  IM+   D  +A+    +        G+LA  +       +V +     +  
Sbjct: 62  AVAVLIVMAIMLTRRD-SMAQSNPSQKLFRRVVTGLLAGSIFFLIGCGIVLAP--LPAGE 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                  + I +++   Y  P E++  +LL +M+GA++L  
Sbjct: 119 FAASTGADEIAQLMLGTYLVPFEVTAVLLLAAMVGALLLAR 159


>gi|307721741|ref|YP_003892881.1| NADH dehydrogenase subunit J [Sulfurimonas autotrophica DSM 16294]
 gi|306979834|gb|ADN09869.1| NADH dehydrogenase subunit J [Sulfurimonas autotrophica DSM 16294]
          Length = 188

 Score =  107 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 87/165 (52%), Gaps = 1/165 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FYLF+F+ I   ++ VT +  +Y++ +L    +  +  F +LGA+F+  + ++VY
Sbjct: 2   FEAVAFYLFAFLTIAMFYITVTTKQALYALTALAAGMIFISAFFFILGADFLGAVQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+  + F +M  D   EV E +  +  +      + A  +++  +  MV      L 
Sbjct: 62  TGAVMALYAFGMMFFDTTREVKEKQGNKYIIVGLST-LAAVLVVIIFAAPMVSENIVALY 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +    N + +G VL+T+Y  P E++  +LL++M+  IVL  + 
Sbjct: 121 PAIDGVGNTQEVGLVLFTKYLIPFEVAAIMLLVAMVAGIVLAGKK 165


>gi|115605073|ref|YP_784525.1| NADH-plastoquinone oxidoreductase subunit 6 [Piper cenocladum]
 gi|122164316|sp|Q06GK8|NU6C_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|112253802|gb|ABI14523.1| NADH-plastoquinone oxidoreductase subunit 6 [Piper cenocladum]
          Length = 176

 Score =  107 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +         ++ S  V+ + N IYS FSL F  V  +  ++L  + FVA   L++Y
Sbjct: 7   IHDILLVFLGSGIVLGSLGVILLTNTIYSAFSLGFVLVCISLFYILSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  +F +M +       D  I             S F  ++   L       +  
Sbjct: 67  VGAINVLIIFAVMFMKGSEYSNDFSIWTVGDGVTSLVCTSIFFSLITTILDTSWYGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +   ++       +NV+ IG  L T +  P E+   +LL+++IGAI +  +
Sbjct: 127 TRSNQIMEQDL-LSNVQQIGIHLVTDFILPFELISIVLLVALIGAIAMARQ 176


>gi|11497584|ref|NP_054991.1| NADH dehydrogenase subunit 6 [Spinacia oleracea]
 gi|18203253|sp|Q9M3I8|NU6C_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|7636165|emb|CAB88787.1| NADH dehydrogenase ND6 subunit [Spinacia oleracea]
          Length = 176

 Score =  107 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+ +  VV   NPI+S FSL    V  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGLILGALGVVLFTNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  +F +M +       + +              S F+ +++  L       +  
Sbjct: 67  VGAINVLIIFSVMFMSGPEYDKKFQLWTVGDGVTSLVCISLFVSLISTILNTSWYGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +   ++       N  + IG  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 127 TKSNQILEQDL-INASQQIGIHLSTDFFLPFELISIILLVSLIGAIAVARQ 176


>gi|329957593|ref|ZP_08298068.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           clarus YIT 12056]
 gi|328522470|gb|EGF49579.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           clarus YIT 12056]
          Length = 170

 Score =  107 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 82/170 (48%), Gaps = 7/170 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +    + S L VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   NLETIVFYFLAAFITVFSILTVTTKRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V ++F I++   + ++A   K+  FL      +  A +++  +    F A  ++
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDMAGKLKRSKFLAGLGTTVAGAVIVLFITLKHKFIATTDV 123

Query: 122 SRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
           + L     N++ IG  + +     Y  P E    +LL  ++G +++  + 
Sbjct: 124 APLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGLLIARKR 170


>gi|290489850|gb|ADD31332.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ilex cornuta]
          Length = 177

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 10/149 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++      + 
Sbjct: 31  NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138
                 +G     I+   L V     +  ++   +               +N + IG  L
Sbjct: 91  HL--WTVGDGVTSIVCTSLFVSLMTTIPDTSWHGIIWTTKSNQIIEQDLISNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            T +  P E+   ILL+++IGAI +  + 
Sbjct: 149 STDFFLPFELISIILLVALIGAIAVARQQ 177


>gi|332971170|gb|EGK10134.1| NADH-quinone oxidoreductase subunit J [Psychrobacter sp.
           1501(2011)]
          Length = 241

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    +AII+S  V+ + NP++++ S+I   +  AG+F +LGA F   + ++VY GA++
Sbjct: 15  FYALGLVAIIASLRVIMLANPVHAILSMIVTLLALAGIFFILGAPFAGALQVIVYAGAIL 74

Query: 68  VFFLFIIMMLDIDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNFMVFSAEG 119
           V F+F+IMML++  +  E   K             +F I ++   LI   +         
Sbjct: 75  VLFVFVIMMLNLGTKNEERESKWLSSDTWAVPAALTFIIAVVLTYLISMGNGLSHADGSV 134

Query: 120 ELSRLVFKGNNVENIGKVLYTQY 142
             + +  +  + + +G  L+T+Y
Sbjct: 135 VAATIGAETVSAKQVGIALFTEY 157


>gi|197294162|ref|YP_002149782.1| NADH-plastoquinone oxidoreductase subunit 6 [Cicer arietinum]
 gi|221272317|sp|B5LMS3|NU6C_CICAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|197089850|gb|ACH41120.1| NADH-plastoquinone oxidoreductase subunit 6 [Cicer arietinum]
          Length = 176

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 10/173 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +            I+ S  VV + NPI+S FSL    V  +  ++L  + FVA   L++
Sbjct: 6   TLHDFLLVFLGSGLILGSLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ +  +F +M ++      +       +G     I+   + V     +  ++   +
Sbjct: 66  YVGAINILIIFAVMFMNSSEYYQDFNL--WTVGDGITLIVCTSIFVSLVTTIPDTSWYGI 123

Query: 122 SRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                          +  + IG  L T +  P E+   ILL+++IG IV+  +
Sbjct: 124 IWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGTIVVARQ 176


>gi|269139722|ref|YP_003296423.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Edwardsiella
           tarda EIB202]
 gi|267985383|gb|ACY85212.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Edwardsiella
           tarda EIB202]
 gi|304559589|gb|ADM42253.1| NADH-ubiquinone oxidoreductase chain J [Edwardsiella tarda FL6-60]
          Length = 190

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + +A++++  V+T  NP++++  LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   EFAFYAAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  +     G +    L + +++    + + + +G +  +
Sbjct: 62  AIMVLFVFVVMMLNLGHSVVEQERAWLKPGVWIGPALLSLILLAVVLYAISTLQGGV--I 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +  + + +G  L+  Y   +E+   +LL  ++ A  +   H   
Sbjct: 120 DGRAVDAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHHPG 165


>gi|224538207|ref|ZP_03678746.1| hypothetical protein BACCELL_03098 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520175|gb|EEF89280.1| hypothetical protein BACCELL_03098 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 170

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +    + S L VT R+ + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   ITLETVVFYFLAVFISVCSILTVTTRHMVRSATYLLFTLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   + +     K+   L      +  A ++V  +    F    +
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDRTTKLKRSKLLAGLGATVGGAIIVVFITLKHKFLVTTD 122

Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
           L  L     N++ IG  + +     Y  P E    +LL  ++G +V+  + 
Sbjct: 123 LVPLEI---NIKTIGHSMLSSDKFGYLLPFEAVSILLLACIVGGLVIARKR 170


>gi|160891175|ref|ZP_02072178.1| hypothetical protein BACUNI_03622 [Bacteroides uniformis ATCC 8492]
 gi|270294466|ref|ZP_06200668.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481071|ref|ZP_07940150.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           sp. 4_1_36]
 gi|156859396|gb|EDO52827.1| hypothetical protein BACUNI_03622 [Bacteroides uniformis ATCC 8492]
 gi|270275933|gb|EFA21793.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902784|gb|EFV24659.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           sp. 4_1_36]
          Length = 170

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +    + S L VT    + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   ITLETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   + +V E  K+  FL      +  A ++V  +    F A  +
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDVIEKLKRSRFLAGLGATVGGAIIVVFITLKHKFIATTD 122

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
           +  L     N++ IG  + +     Y  P E    +LL  ++G +++  + 
Sbjct: 123 VEPLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGLLIARKR 170


>gi|110225687|ref|YP_665692.1| NADH dehydrogenase subunit 6 [Mesostigma viride]
 gi|17222558|gb|AAL36731.1|AF353999_11 NADH dehydrogenase subunit 6 [Mesostigma viride]
          Length = 219

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 52/216 (24%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FYLFS +A++S+ +V+  +NP+YSV  LI  F N   L +L G +F+AM+ +VVYVGA
Sbjct: 1   MLFYLFSSLALVSAIIVIRTKNPVYSVLFLILVFANVTALLILEGLDFLAMVFIVVYVGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFMVFS 116
           + V FLF++MML+I++        R       I IL+          ELI     F +F 
Sbjct: 61  IAVLFLFVVMMLNINLAEMSENMVRYLPVGGLILILSLFQILLIVESELIPPLFPFKIFQ 120

Query: 117 AEGELSRLVF-------------------------------------------KGNNVEN 133
            +  LS                                                 +N++ 
Sbjct: 121 TDLLLSWFSNLQESLNAPLKENLTILYNIAPWHFVEPNLRPVSGINCFLMSQQDISNIQA 180

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           IG VL++ + + L + G ILL++MIG I+L +   +
Sbjct: 181 IGLVLFSTHWFYLMLGGLILLVAMIGTILLTMDKNK 216


>gi|290489880|gb|ADD31347.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Plumbago
           auriculata]
          Length = 176

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+   NPI+S FSL F  +  +  ++L  ++FVA   L++YVGA+ V  LF +M ++   
Sbjct: 26  VIFFTNPIFSAFSLGFVLLCISLFYILENSQFVASAQLLIYVGAINVLILFAVMFIN--D 83

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVEN 133
              +       +G     ++   L V     ++ ++   +               NN + 
Sbjct: 84  SEYDKDFHFWTIGDGITSLICTSLFVLLITSILNTSWYGIVWTTRLNHIVEQDLINNSQQ 143

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 144 IGIHLSTDFFLPFELISIILLVALIGAITVARQ 176


>gi|206890416|ref|YP_002248753.1| NADH-ubiquinone oxidoreductase chain 6 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742354|gb|ACI21411.1| NADH-ubiquinone oxidoreductase chain 6 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 170

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++ +F+  F     I S  V+  +N I+S F L+   ++ A +FL L AEF+ +I ++VY
Sbjct: 5   IEQVFYVYFFISLTILSIAVIASKNIIHSAFFLLIFLLHVAAIFLFLNAEFLMIIQIIVY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VG V+  F+F IM+++I  E    R  +  +     G L            +F    +  
Sbjct: 65  VGGVLALFIFAIMIMNIKEEFRHKRFVKFSIAGLITGFLFLA------GLYIFLGTVKSP 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             V   ++V ++GK+LY+ Y  P EI   +LL++M+G I++  +
Sbjct: 119 ENVLIKSDVNSLGKLLYSYYFLPFEILSLVLLIAMVGGIIIAKK 162


>gi|290790888|gb|ADD63144.1| NADH-plastoquinone oxidoreductase subunit 6 [Microlaena stipoides]
          Length = 176

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++LL + FVA+  L++YVGA+ +  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINILIIFAVMFVNGSEWSKD 89

Query: 86  PRKK---RGFLGSFFIGILAAELIVCA-SNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139
                   GF     I I  + +     +++         +++V +G  NNV+ IG  L 
Sbjct: 90  KNFWTIGDGFTLLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLA 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+S+IGAI +  +
Sbjct: 150 TDFYLPFELISIILLVSLIGAITMARQ 176


>gi|225166014|ref|ZP_03727763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae
           bacterium TAV2]
 gi|224799739|gb|EEG18219.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae
           bacterium TAV2]
          Length = 177

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SLFFY+FS +A+     VV  +N + S   L+   V+ AG+F+LL A  +A++ + VY
Sbjct: 1   MSSLFFYVFSTLALACGLGVVFNKNTVTSALCLLGVLVSLAGIFVLLEAFLLAVLLIFVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+  FLFI+M+ D        R  +  L +  I   A  L+    +     +   ++
Sbjct: 61  AGAVVALFLFIVMLTDAAGGGGGKRFSKTTLVAGLIS--AVLLLAALYSIYAHGSFDTIA 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                G +++  G+ L+T Y  P++I GF+LL++M+G IV+  +
Sbjct: 119 PAASVGASLKTYGRELFTTYLLPVQIVGFLLLIAMLGVIVISKK 162


>gi|220919432|ref|YP_002494736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957286|gb|ACL67670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 168

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F++F+   + ++  V+  R+P+Y+  +L+ AF   AG+++LL A  +A + ++V
Sbjct: 4   TAEQVTFWVFAIPLVATAIGVIMSRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV+V FLF+IM+L +  E      +R         +    L+   ++ +  +   EL
Sbjct: 64  YAGAVMVLFLFVIMLLSLGDEHLIKEPRRAM--QLIGALGVVLLVAVLASAIAQARTSEL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           + L      V+ +G+VLYTQ+  P E++  +LL
Sbjct: 122 ATLTADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154


>gi|167630270|ref|YP_001680769.1| proton-translocating NADH-ubiquinone oxidoreductase, chain j
           [Heliobacterium modesticaldum Ice1]
 gi|167593010|gb|ABZ84758.1| proton-translocating NADH-ubiquinone oxidoreductase, chain j
           [Heliobacterium modesticaldum Ice1]
          Length = 170

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 3/163 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  + + ++S+  VV +++ ++S   L  +F+  AG+++LL A+F+A + ++VY GAV
Sbjct: 10  AFYGLAALTLLSAAGVVFLKDIVHSALLLAASFIGVAGIYVLLNADFLAAVQVLVYGGAV 69

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            +   F +M+             R  +   F       +   A  F  F     +     
Sbjct: 70  AILIAFGVMLTRRPHMKETNANNRWVVWGAFTAAFTFAICGWAIAFTPFMP---IDASPA 126

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +   ++ I   L   +  P E +  +L +++IGAI+L    + 
Sbjct: 127 QVTAIDGIATQLLGDFVVPFEAAAILLTVALIGAIILAKGAKE 169


>gi|315654706|ref|ZP_07907612.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii ATCC
           51333]
 gi|315491170|gb|EFU80789.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii ATCC
           51333]
          Length = 324

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q++F    S +A+I++  V      +++   ++   V  AG++  +GAEF+  + +VV
Sbjct: 16  TGQTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVV 75

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA+++ FLF+IM++ +    +    K G + +  + ++A  ++   +     +  G  
Sbjct: 76  YTGAIMMMFLFVIMLVGVQAVDSPRDSKVGTVAAAVLLVVAFGIMAIVAAVNT-TVNGAP 134

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +R     N V    +V+ T YA PLE+   +L+++ +GA+ L    
Sbjct: 135 ARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSLTHSE 179


>gi|167764934|ref|ZP_02437055.1| hypothetical protein BACSTE_03326 [Bacteroides stercoris ATCC
           43183]
 gi|167697603|gb|EDS14182.1| hypothetical protein BACSTE_03326 [Bacteroides stercoris ATCC
           43183]
          Length = 170

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 81/170 (47%), Gaps = 7/170 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +    + S L VT R  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   NLETIVFYFLAAFISVFSILTVTTRRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V ++F I++   + ++A   K+  FL      +  A +++  +    F A  ++
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDMAAKLKRSKFLAGLGATVAGAVIVLFITLKHKFIATTDI 123

Query: 122 SRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
             L     N++ IG  + +     Y  P E    +LL  ++G +++  + 
Sbjct: 124 EPLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGLLIARKR 170


>gi|15806508|ref|NP_295219.1| NADH dehydrogenase I subunit J [Deinococcus radiodurans R1]
 gi|6459253|gb|AAF11059.1|AE001993_9 NADH dehydrogenase I, J subunit [Deinococcus radiodurans R1]
          Length = 205

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
            V  +N +++   L+   +  AGLF  + A F+A   ++VY GA++V FLF+IM+L    
Sbjct: 19  TVAAKNAVHAALGLVGTLICVAGLFASMNASFLAATQVIVYAGAIMVLFLFVIMLLGASQ 78

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV--FKGNNVENIGKVLY 139
            +   R    F+G               +  + +     L+  V   +G     +G+ L 
Sbjct: 79  PIT-ARDPLPFVGPLGAIAALLLAGGFVTLALTYQDPRPLAESVQALRGGAAGAVGETLL 137

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T++  P E    +LL++++G++ L+ R
Sbjct: 138 TRFLLPFEAVSILLLVAIVGSVTLVQR 164


>gi|189468081|ref|ZP_03016866.1| hypothetical protein BACINT_04475 [Bacteroides intestinalis DSM
           17393]
 gi|189436345|gb|EDV05330.1| hypothetical protein BACINT_04475 [Bacteroides intestinalis DSM
           17393]
          Length = 171

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +    + S L VT R  + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   ITLETVVFYFLAVFITVCSILTVTTRRMVRSATYLLFTLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   + +    + KR  L +     +   +IV      +      
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDRTIDKLKRSKLMAGLGATVGGAIIVLF--ITLKHKFIV 120

Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
            + L     N++ IG  + +     Y  P E    +LL  ++G +V+  + 
Sbjct: 121 TTDLAPLEINIKTIGHSMLSSDKYGYLLPFEAVSILLLACIVGGLVIARKR 171


>gi|86160614|ref|YP_467399.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777125|gb|ABC83962.1| NADH dehydrogenase subunit J [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 168

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F++F+   + ++  V+  R+P+Y+  +L+ AF   AG+++LL A  +A + ++V
Sbjct: 4   TAEQVTFWVFAIPLVATAIGVIMSRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV+V FLF+IM+L +  E      +R         +    L+   ++ +  +   EL
Sbjct: 64  YAGAVMVLFLFVIMLLSLGDEHLIKEPRRAM--QLIGALGVVLLVAVLASAIAQARTSEL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           + L      V+ +G+VLYTQ+  P E++  +LL
Sbjct: 122 ATLAADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154


>gi|27464589|gb|AAO16152.1| NADH dehydrogenase subunit 6 [Xenia sp. CSM-2002]
 gi|27464592|gb|AAO16154.1| NADH dehydrogenase subunit 6 [Asterospicularia randalli]
          Length = 154

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVIIASLVLLVAMIGAI 113

Query: 162 VLML----------RHRRDIKRQDISKQLESN 183
           +L                   RQD+  Q+  +
Sbjct: 114 LLAKQPNSPFLYNSHEESSRSRQDLFLQISRS 145


>gi|218129265|ref|ZP_03458069.1| hypothetical protein BACEGG_00842 [Bacteroides eggerthii DSM 20697]
 gi|317475237|ref|ZP_07934504.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           eggerthii 1_2_48FAA]
 gi|217988643|gb|EEC54963.1| hypothetical protein BACEGG_00842 [Bacteroides eggerthii DSM 20697]
 gi|316908690|gb|EFV30377.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 170

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 7/170 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +    + S L VT R  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   NLETIVFYFLAAFITVFSILTVTTRRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V ++F I++   + ++A   K+  FL      I  A ++V  +    F A  ++
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDIAGKLKRSKFLAGLGATIGGAIIVVFITLKHKFIATTDV 123

Query: 122 SRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
             L     N++ IG  + +     Y  P E    +LL  ++G +++  + 
Sbjct: 124 VPLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGLLIARKR 170


>gi|139387497|ref|YP_001122850.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris]
 gi|221272341|sp|A4GGE9|NU6C_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|112031019|gb|ABH88131.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris]
 gi|158187182|gb|ABW22815.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris]
          Length = 176

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 10/173 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +            I+ S  VV   N I+S FSL    V  +  ++L  + FVA   L++
Sbjct: 6   SLHDFILVFLGSGLILGSLGVVFFTNTIFSAFSLGLVLVCVSLFYILSNSHFVAASQLLI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ V  +F +M ++      +   +   +G     ++   + +   N ++ ++   +
Sbjct: 66  YVGAINVLIIFAVMFMN--GSEYDQNFRVWTVGDGITLMVCTSIFISQINTILDTSWHGI 123

Query: 122 SRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                          +  + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 124 IWTTRPNQILEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIFVARQ 176


>gi|150017831|ref|YP_001310085.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904296|gb|ABR35129.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Clostridium
           beijerinckii NCIMB 8052]
          Length = 163

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +  F+  +F+ I  +  VV  +N I+S  S+I  F+  A +F+LL A+F+A+  +++Y
Sbjct: 2   ISAFVFWPIAFLIIAFAIGVVYSKNIIHSALSMILTFIGIAVVFILLQADFLALAQILIY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA+ +  +F IM+   +         +         +    LI        F+ +    
Sbjct: 62  AGAISILIVFAIMLTRKNDMKNSNPFNKLRWTGLAFCLGFFGLITRLILRSNFTYKN--- 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
             +   N +  I    +  Y  P E+S  +LL++++GAI+L  
Sbjct: 119 --LNIENTISAIADGFFGNYMIPFEVSALLLLIALVGAIILAK 159


>gi|301353376|ref|YP_003795634.1| NADH-plastoquinone oxidoreductase subunit 6 [Pteridium aquilinum
           subsp. aquilinum]
 gi|301016294|gb|ADK47581.1| NADH-plastoquinone oxidoreductase subunit 6 [Pteridium aquilinum
           subsp. aquilinum]
          Length = 195

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 5/150 (3%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           + S   V+  N  +S FSL   F   +  + +L A+ VA    +VYVGA+ V  +  +M+
Sbjct: 21  LGSLGAVSFANLTHSAFSLGLVFTRISLSYFVLNADSVAAAQSLVYVGAINVSIVSAVMV 80

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSAEGELSRLVFKGNNV 131
            D         +  G+  +     +   ++    +      + F  + E+      G+NV
Sbjct: 81  TDQPTRSNSTSRNIGYFIALGACAILFSVLTNMIHNTKWFDVSFITQSEILAANTSGSNV 140

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           + +G  L T++  P E++  +LL++++GAI
Sbjct: 141 QQLGYKLLTEFLVPFELASILLLVALVGAI 170


>gi|197124711|ref|YP_002136662.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. K]
 gi|196174560|gb|ACG75533.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. K]
          Length = 168

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F++F+   + ++  V+  R+P+Y+  +L+ AF   AG+++LL A  +A + ++V
Sbjct: 4   TAEQVTFWVFAIPLVATAIGVIISRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV+V FLF+IM+L +  E      +R         +    L+   ++ +  +   EL
Sbjct: 64  YAGAVMVLFLFVIMLLSLGDEHLIKEPRRAM--QLIGALGVVLLVAVLASAIAQARTSEL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
           + L      V+ +G+VLYTQ+  P E++  +LL
Sbjct: 122 ATLTADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154


>gi|52220864|ref|YP_087019.1| NADH dehydrogenase subunit 6 [Panax ginseng]
 gi|75254100|sp|Q68RV3|NU6C_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|51235367|gb|AAT98563.1| NADH dehydrogenasesubunit 6 [Panax ginseng]
          Length = 176

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-------I 79
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF 90

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
            +             S F+ ++           +  +   ++       +N + IG  L 
Sbjct: 91  HLWTIGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTKSNQIIEQDL-ISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176


>gi|325280128|ref|YP_004252670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Odoribacter
           splanchnicus DSM 20712]
 gi|324311937|gb|ADY32490.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Odoribacter
           splanchnicus DSM 20712]
          Length = 169

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +    F   + + ++ S L VT +  + S   L+F     AG++  L   F+  + L 
Sbjct: 3   ITLPQAVFLFLAAVIVVCSILTVTTKRILRSATYLLFVLFATAGIYFELNYSFLGAVQLT 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G +IV ++F I++   D + A+  K   F    F GILAA        F+  +    
Sbjct: 63  VYAGGIIVLYVFSILLTSSDNKKADKIKNSKF----FAGILAAVGGAALCIFITLTHSFP 118

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
           +S  V    N + IG  L      QY  P E+   +LL  +IG I++  + 
Sbjct: 119 VSHFVPGEINQKVIGTALMGTEKYQYLLPFEVISVLLLACIIGGILIARKR 169


>gi|75755712|ref|YP_319816.1| NADH dehydrogenase subunit 6 [Acorus calamus]
 gi|161622362|ref|YP_001586234.1| NADH dehydrogenase subunit 6 [Acorus americanus]
 gi|122217394|sp|Q3V4Y1|NU6C_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272304|sp|A9LYF3|NU6C_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|74381762|emb|CAI53847.1| NADH dehydrogenase ND6 subunit [Acorus calamus]
 gi|156573645|gb|ABU85156.1| NADH-plastoquinone oxidoreductase subunit 6 [Acorus americanus]
 gi|160369905|gb|ABX38796.1| NADH-plastoquinone oxidoreductase subunit 6 [Acorus americanus]
          Length = 177

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGAV V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSND 89

Query: 86  PRKK-------RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
                           S    ++   L       +  +   ++       +NV+ IG  L
Sbjct: 90  FYLWTVGDGVTSLVCTSILFSLITTILDTSWYGIIWNTGSNQIVEQDLT-SNVQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E+   ILL+++IGAI +  +
Sbjct: 149 STDFYLPFELVSIILLVALIGAITMARQ 176


>gi|81176304|ref|YP_398381.1| NADH dehydrogenase subunit 6 [Lactuca sativa]
 gi|122212008|sp|Q332S4|NU6C_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|78675222|dbj|BAE47648.1| NAD(P)H-quinone oxidoreductase chain 6 [Lactuca sativa]
 gi|88657035|gb|ABD47285.1| NADH-plastoquinone oxidoreductase subunit 6 [Lactuca sativa]
          Length = 176

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 10/148 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M ++      + 
Sbjct: 31  NPIYSAFSLGLVFVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFINGSEYSKDF 90

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138
                 +G     ++   L V     +  ++   +               +N + IG  L
Sbjct: 91  HL--WTVGDGITSVVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E    ILL+++IGAI +  +
Sbjct: 149 STDFFLPFEFISIILLVALIGAIAVARQ 176


>gi|145219894|ref|YP_001130603.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206058|gb|ABP37101.1| NADH dehydrogenase subunit J [Chlorobium phaeovibrioides DSM 265]
          Length = 173

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FYLF+ + + S+  VV  RN IYS FSL+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 7   TVIFYLFAAITVFSAAFVVFSRNVIYSAFSLLFTFFGIAALYVFLSADFIAVTQVVVYVG 66

Query: 65  AVIVFFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            ++V  LF +M  +  +D ++             F+GILAA L    +      ++ +L 
Sbjct: 67  GILVLLLFGVMFTNNIMDTDLKTDVLHAIPGTFLFLGILAALLFTFYTTNGWMPSDTQL- 125

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGF 151
               +G+ VE IG    ++Y  P E++  
Sbjct: 126 ----QGSVVERIGFETMSRYVLPFEMASI 150


>gi|297625181|ref|YP_003706615.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Truepera
           radiovictrix DSM 17093]
 gi|297166361|gb|ADI16072.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Truepera
           radiovictrix DSM 17093]
          Length = 184

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 94/179 (52%), Gaps = 1/179 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F+L + + ++ +  V+T+R P+++  +L+   +  A  ++ L A F+A I ++VY GA
Sbjct: 2   LTFFLLAAVMVLGALGVITLRQPVHAALALVGTLLTLAVTYVTLQAHFLAAIQVIVYAGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRL 124
           ++V FLF+IM+L+++ +    R       ++  G++AA  +   +        + ++   
Sbjct: 62  IMVLFLFVIMLLNVEGDEGTVRLAWVRPAAYLTGVVAAAGVALTAFLDARQLPDAQVITA 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
              G     +G VL+ Q+    ++ G +LL  ++GA+ L+ R  R+   +++  + E  
Sbjct: 122 ALAGGGAGALGGVLFNQFVLAFQLVGVLLLTGIVGAVSLVERSAREKGDEEVFGEPERE 180


>gi|321401341|gb|ADW83096.1| NADH dehydrogenase subunit 6 [Pavlova lutheri]
          Length = 212

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 114/207 (55%), Gaps = 21/207 (10%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           SL  +LFS  A++SS +V+T  NP++SVF+LIF FVN A + L+L  EF++++ LVVYVG
Sbjct: 6   SLIIFLFSSFALVSSAVVITATNPVHSVFALIFVFVNVASVLLVLRVEFISLLFLVVYVG 65

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---------ILAAELIVCASNFMVF 115
           AV V FLF+IMML++ +  A             +G         I+  +L+  +  F+  
Sbjct: 66  AVAVLFLFVIMMLNVKLNEASDNSVSYLPLGLVLGVLFLLEVSLIITGDLLPFSGGFLYR 125

Query: 116 SAEGE------------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           S   +            L  +V   NN++ IG V+YT   +P  ++G +LLLSMIGAIVL
Sbjct: 126 SEISQNLFAGSPFSHLHLESVVAVPNNMQLIGSVVYTDLFFPFILAGLLLLLSMIGAIVL 185

Query: 164 MLRHRRDIKRQDISKQLESNPDNSIVM 190
            L       +QDI KQ+      SI +
Sbjct: 186 SLMKTSSALKQDIFKQVSVLAFESIRV 212


>gi|89280689|ref|YP_514906.1| NADH dehydrogenase subunit 6 [Solanum lycopersicum]
 gi|122201762|sp|Q2MI47|NU6C_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|84372037|gb|ABC56354.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum lycopersicum]
 gi|89241725|emb|CAJ32448.1| NADH degydrogenase subunit 6 [Solanum lycopersicum]
          Length = 176

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  A FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135
             K   L +   GI +   I    + +   ++     +++             +N + IG
Sbjct: 86  YYKDFHLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             L T +  P E+   ILL+++IGAI +  +
Sbjct: 146 IHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|329962488|ref|ZP_08300488.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           fluxus YIT 12057]
 gi|328530044|gb|EGF56932.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           fluxus YIT 12057]
          Length = 170

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +    + S L VT    + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   INLETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   + ++A   K+  FL      I  A +++  +    F A  +
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDIAGKLKRSKFLAGLGTTIGGAVIVLFITLNHKFIATTD 122

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
           +  L     N++ IG  + +     Y  P E    +LL  ++G +++  + 
Sbjct: 123 VEPLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGLLIARKR 170


>gi|182412572|ref|YP_001817638.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus
           terrae PB90-1]
 gi|177839786|gb|ACB74038.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus
           terrae PB90-1]
          Length = 211

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 1/167 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +  F L     +  + + V+ +  I +V  L+   V  AGL+  L + F+A++ +++YVG
Sbjct: 12  AAVFALAIGTTLAGALIAVSSQRIIRAVTGLMICCVGLAGLYYFLNSPFLALMEILIYVG 71

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV V  +F +M+ + D  V   +  R F  +    +++A +    +   + +        
Sbjct: 72  AVCVTIVFGVMLAEPDWPV-NLKHPRAFHKTLLAALVSAAIGGGLAGLALHAPWPAQPVQ 130

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                +V  IG  L T Y++  E+   +LL++++GA+V+    R   
Sbjct: 131 TVNDGSVAAIGTSLLTTYSFVFELISLVLLVAILGALVIARAGRSRT 177


>gi|255007681|ref|ZP_05279807.1| putative NADH dehydrogenase chain J [Bacteroides fragilis 3_1_12]
 gi|313145376|ref|ZP_07807569.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12]
 gi|313134143|gb|EFR51503.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12]
          Length = 170

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +   I  S L VT +  + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   LTLETVVFYFLAVFIIAMSILTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   + + A   K+  FL      I+ A L++  +    F    +
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDRAAHLKRSKFLAGLATTIVGAALVLFITLTHKFVPTSD 122

Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
              +      ++ IG  L +     Y  P E    +LL  ++G +++  + 
Sbjct: 123 PEPVEIS---IKTIGHALLSSGKYGYVLPFEAVSILLLACIVGGLLIARKR 170


>gi|323148957|ref|YP_004222511.1| NADH-plastoquinone oxidoreductase subunit 6 [Smilax china]
 gi|308742648|gb|ADO33499.1| NADH-plastoquinone oxidoreductase subunit 6 [Smilax china]
          Length = 176

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYSND 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
            R     +G     ++   ++      +  ++   +               +NV+ IG  
Sbjct: 90  SRL--WTIGDGVTSLVCTSILFSLITTIPDTSWYGILWTTKSNQILEQDLISNVQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+S+IGAI +  +
Sbjct: 148 LSTDFYLPFELISIILLVSLIGAITMARQ 176


>gi|91984046|ref|YP_567131.1| NADH dehydrogenase subunit 6 [Vitis vinifera]
 gi|122236488|sp|Q0ZIW5|NU6C_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|91701704|gb|ABE47588.1| NADH-plastoquinone oxidoreductase subunit 6 [Vitis vinifera]
          Length = 176

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78
            NPIYS FSL   FV  +  ++   + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVFVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
            ++             S F  ++   L       +  +   ++       +N + IG  L
Sbjct: 90  FNLWTVGDGVTSVVCTSIFASLITTILDTSWYGIIWTTRSNQIIEQDL-ISNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E+   ILL+++IGAI +  +
Sbjct: 149 STDFFLPFELISIILLVALIGAIAVARQ 176


>gi|208435163|ref|YP_002266829.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori G27]
 gi|208433092|gb|ACI27963.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori G27]
          Length = 166

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 2/146 (1%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYVGAVIV + F +M  +
Sbjct: 2   ALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFGMMFFN 61

Query: 79  IDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
              EV E ++    L   SF + +L   ++   S     S +   + +  +  N++ IG 
Sbjct: 62  SAAEVIERKQSPKILCALSFGVALLLTLILSAPSIGENLSNQVNSNAIDAQIPNIKAIGY 121

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIV 162
           VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 VLFTNYLIPFEAAALMLLVAMVGGIA 147


>gi|308746028|ref|YP_003934612.1| NADH-plastoquinone oxidoreductase subunit 6 [Cheilanthes
           lindheimeri]
 gi|302375461|gb|ADL29835.1| NADH-plastoquinone oxidoreductase subunit 6 [Cheilanthes
           lindheimeri]
          Length = 197

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 5/164 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +      L     ++ S   V+  N   S FS    F   + L+ +  A+FVA    +VY
Sbjct: 7   IHEFVLALVELGILLGSLGAVSFVNTANSAFSPGSVFTCISLLYFVSNADFVAAAQSLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNF----MVFSA 117
           VGAV V  +F +M+ D            G+L  S    IL + L     N     + F+ 
Sbjct: 67  VGAVNVLTVFAVMITDEPTGSNVAASGVGYLSASGACAILFSALAYVIHNTKWFDLSFTN 126

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           +  +      GNNV+ +G  L  ++  P E++  +LL++++GAI
Sbjct: 127 QSGIIMSGIPGNNVQQLGYKLLGEFVVPFELASILLLVALVGAI 170


>gi|78778013|ref|YP_394328.1| NADH dehydrogenase subunit J [Sulfurimonas denitrificans DSM 1251]
 gi|78498553|gb|ABB45093.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sulfurimonas
           denitrificans DSM 1251]
          Length = 190

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 7/183 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ FYLF+F+ I   ++ VT    +Y++ +L    +  +  F +LGA+F+  + +VVY
Sbjct: 2   FEAIAFYLFAFLTIAMFYIAVTTSQALYALSALAAGMIFISAFFFILGADFLGAVQIVVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+  + F +M  D   EV E +  +  +      + A  +++  +  +V S    L 
Sbjct: 62  SGAVMALYAFGMMFFDTTREVKEKQGNKAIVIGLS-SLAALMVVIIVAAPIVGSNIEALY 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
            +     NV+ +G VL+T+Y  P E++  +LL++MI  IVL        K+ D+S  L S
Sbjct: 121 PMSEGVGNVQEVGMVLFTKYLVPFEVAAVMLLVAMIAGIVLA------GKKMDLSLTLMS 174

Query: 183 NPD 185
           + +
Sbjct: 175 DSE 177


>gi|310789318|gb|EFQ24851.1| NADH dehydrogenase subunit 6 [Glomerella graminicola M1.001]
          Length = 247

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 52/213 (24%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S +AI+ + L +  +NPI SV  LI  F   +   +LLG  F+ +  L+VYVGAV + 
Sbjct: 22  IVSILAILCAILTIVSKNPIVSVLFLIGLFGMVSSYLILLGLNFIGLSYLIVYVGAVSIL 81

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112
           FLFI+M+++I +   +   K     + FI IL   LI     +                 
Sbjct: 82  FLFILMLINIRVSELQSNTKNSIPLALFITILFNYLIFQFLPYDLAILNNSNHSSALNNV 141

Query: 113 -----------------------------------MVFSAEGELSRLVFKGNNVENIGKV 137
                                              + F+        + + +++ +IG +
Sbjct: 142 LYHTSFNGISDYNKIFNSFGSNSQISNVAKEGSSDLFFATSSSWDGNLIETSHISSIGNI 201

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           LYT ++  L ++ FILLL+MIGAIV+ ++ +  
Sbjct: 202 LYTSHSMWLILTSFILLLAMIGAIVITIKQKNK 234


>gi|163781780|ref|ZP_02176780.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883000|gb|EDP76504.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1]
          Length = 159

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +  F  + S    V V++P++S+   + A +  AG+FL LGAE +A + L++Y  A
Sbjct: 1   MILGVLGFWLLASVLGAVLVKSPVHSILFFLSAVLAMAGIFLSLGAELLAGLQLIIYAVA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++VF++ +I  +  +         R     F +G+    ++     +MV   +       
Sbjct: 61  IVVFYVLVITTIPWEKVKRFEGVYRR---EFLMGLPVVLVVFALMGYMVLKGKLAQPSEA 117

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            + +NV  +GK L+T Y +P E++  ILL++MIGAI+L  + 
Sbjct: 118 VQ-DNVRELGKTLFTSYLFPFEVASVILLVAMIGAILLGRKE 158


>gi|53712157|ref|YP_098149.1| NADH dehydrogenase I chain J [Bacteroides fragilis YCH46]
 gi|60680341|ref|YP_210485.1| putative NADH dehydrogenase chain J [Bacteroides fragilis NCTC
           9343]
 gi|253563805|ref|ZP_04841262.1| NADH dehydrogenase subunit I J [Bacteroides sp. 3_2_5]
 gi|265765488|ref|ZP_06093763.1| NADH dehydrogenase subunit I J [Bacteroides sp. 2_1_16]
 gi|52215022|dbj|BAD47615.1| NADH dehydrogenase I chain J [Bacteroides fragilis YCH46]
 gi|60491775|emb|CAH06533.1| putative NADH dehydrogenase chain J [Bacteroides fragilis NCTC
           9343]
 gi|251947581|gb|EES87863.1| NADH dehydrogenase subunit I J [Bacteroides sp. 3_2_5]
 gi|263254872|gb|EEZ26306.1| NADH dehydrogenase subunit I J [Bacteroides sp. 2_1_16]
 gi|301161874|emb|CBW21418.1| putative NADH dehydrogenase chain J [Bacteroides fragilis 638R]
          Length = 170

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +   I  S L VT +  + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   LTLETVVFYFLAVFIIAMSILTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   + + A   K+  FL      I+ A L++  +    F    +
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDRAAHLKRSKFLAGLVTTIIGAILVLFITLTHKFVPTSD 122

Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
              +      ++ IG  L +     Y  P E    +LL  ++G +++  + 
Sbjct: 123 PEPVEIS---IKTIGHALLSSGKYGYVLPFEAVSILLLACIVGGLLIARKR 170


>gi|170727212|ref|YP_001761238.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Shewanella
           woodyi ATCC 51908]
 gi|169812559|gb|ACA87143.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Shewanella
           woodyi ATCC 51908]
          Length = 205

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 18/203 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F   + + +IS+ L VT  N ++++  L+   +  A +F L G+ F A + ++VY
Sbjct: 1   MIEIIFITTAIVCVISALLTVTAHNAVHALLYLVTMMIAIALIFFLFGSPFAAALQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA----- 117
            GAV+V F+F+ MML    +     K    L +    +L A ++V     +  +      
Sbjct: 61  AGAVMVLFVFVTMMLHQGEQSIIDEKTLFSLKTAKGPLLLAVILVIELLLIGITPLDNSP 120

Query: 118 -------------EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                        +   S       +V+++ K LY  Y   + I+  +LL S+I AI + 
Sbjct: 121 SLTPLNTVNSESQQLSTSSKTPSLTSVKSLAKQLYGPYKLLVIIAAMLLLSSLIAAIHIA 180

Query: 165 LRHRRDIKRQDISKQLESNPDNS 187
            +  R  +   ++   ES    +
Sbjct: 181 RKSSRLTENSPVNGDSESKASEA 203


>gi|33519936|ref|NP_878768.1| NADH dehydrogenase I chain J [Candidatus Blochmannia floridanus]
 gi|33504282|emb|CAD83174.1| NADH dehydrogenase I chain J [Candidatus Blochmannia floridanus]
          Length = 183

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+   +AII++ LV+   NPIY++  LIF+ +  +     L A F   I +++Y GA
Sbjct: 3   VLFYVSGIIAIIATILVIISNNPIYALLYLIFSLLCTSCNLFSLNASFAGSIEIIIYAGA 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F+F IMM D+   +     K     S  I + A+ LI      ++FS     +  +
Sbjct: 63  IMVLFMFSIMMFDMKNIILNVCNKEYTFLSLRICVGASLLISALLIIVLFSILQITNCFI 122

Query: 126 FKGN---NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              N   +++ IG  L+  Y   +E++ F+LL ++I  I +    +
Sbjct: 123 DGINCVIDIKQIGITLFGPYMLIVEVASFLLLSALIAVIHIAQEDK 168


>gi|11466850|ref|NP_039447.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|50234041|ref|YP_052818.1| NADH dehydrogenase subunit 6 [Oryza nivara]
 gi|109156636|ref|YP_654255.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group]
 gi|68565730|sp|Q6ENA4|NU6C_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|148880121|sp|P0C329|NU6C_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|148880122|sp|P0C330|NU6C_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|148880123|sp|P0C331|NU6C_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|12053|emb|CAA33908.1| NADH dehydrogenase ND6 [Oryza sativa Japonica Group]
 gi|42795528|gb|AAS46095.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group]
 gi|42795594|gb|AAS46160.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|42795658|gb|AAS46223.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group]
 gi|46805098|dbj|BAD17337.1| rice chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica
           Group]
 gi|46805101|dbj|BAD17340.1| rice chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica
           Group]
 gi|49615065|dbj|BAD26848.1| NADH dehydrogenase subunit 6 [Oryza nivara]
 gi|290790615|gb|ADD62875.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza sativa Japonica
           Group]
 gi|290790684|gb|ADD62943.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza meridionalis]
 gi|290790753|gb|ADD63011.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza australiensis]
 gi|226674|prf||1603356DB NADH dehydrogenase ND6
          Length = 176

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NP +S FSL    V  +  ++LL + FVA+  L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPTFSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89

Query: 86  PRKK---RGFLGSFFIGILAAELIVCA-SNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139
                   GF     I I  + +     +++         +++V +G  NNV+ IG  L 
Sbjct: 90  KNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLA 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+S+IGAI +  +
Sbjct: 150 TDFYLPFELISIILLVSLIGAITMARQ 176


>gi|323149135|ref|YP_004222699.1| NADH-plastoquinone oxidoreductase subunit 6 [Anthriscus cerefolium]
 gi|289645628|gb|ADD13691.1| NADH-plastoquinone oxidoreductase subunit 6 [Anthriscus cerefolium]
          Length = 176

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------DI 79
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M +       + 
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKNF 90

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
            +             S F+ ++           +  +   ++       +N + IG  L 
Sbjct: 91  HLWTVGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDL-ISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176


>gi|290489884|gb|ADD31349.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Staphylea
           colchica]
          Length = 178

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 8/173 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +            I+    VV   NPIYS FSL    V  +  ++   + FVA   L++
Sbjct: 6   TIHDFLLVFLGSGLILGGLGVVLRTNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ +  +F +M ++      +       +G     ++   + V     ++ ++   +
Sbjct: 66  YVGAINILIIFAVMFMNGSEYYKDFNLWTVGIGDGVTSLVCTSIFVSLITIILDTSWYGI 125

Query: 122 SRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                          NN + IG  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 126 IWTTRSNQIIEQDLINNSQQIGIHLSTDFFLPFELISIILLVSLIGAIAMARQ 178


>gi|323168551|gb|EFZ54231.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Shigella sonnei 53G]
 gi|332766099|gb|EGJ96309.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Shigella
           flexneri 2930-71]
          Length = 166

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 73/147 (49%), Gaps = 2/147 (1%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           ++T  NP++++  LI + +  +G+F  LGA F   + ++VY GA++V F+F++MML++  
Sbjct: 1   MITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGG 60

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141
              E  ++      +    + + +++    + +     +   +     + + +G  L+  
Sbjct: 61  SEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GIDGTPISAKAVGITLFGP 118

Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHR 168
           Y   +E++  +LL  ++ A  +    R
Sbjct: 119 YVLAVELASMLLLAGLVVAFHVGREER 145


>gi|207108911|ref|ZP_03243073.1| NADH dehydrogenase subunit J [Helicobacter pylori HPKX_438_CA4C1]
          Length = 166

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 2/146 (1%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           + +V+T  N +Y++ +L  + V  +  F LL AEF+ ++ + VYVGAVIV + F +M  +
Sbjct: 2   ALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFGMMFFN 61

Query: 79  IDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
              EV E ++    L   SF + +L   ++   S     S +   + +  +  N++ IG 
Sbjct: 62  SAAEVIERKQSPKILCALSFGVALLLTLILSAPSIGENLSRQVNSNAIDAQIPNIKAIGY 121

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIV 162
           VL+T Y  P E +  +LL++M+G I 
Sbjct: 122 VLFTNYLIPFEAAALMLLVAMVGGIA 147


>gi|86158999|ref|YP_465784.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775510|gb|ABC82347.1| NADH dehydrogenase subunit J [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 211

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 81/165 (49%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + FY  + + +  +  V   RN +YS F L+ A + A  L++LL A+FVA+  L++Y
Sbjct: 47  LPDVLFYALAVLTVAGAAGVALSRNILYSTFGLLVALLGAGSLYVLLSADFVAVTQLLIY 106

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G V+V  LF +M+ +   ++       G  G F + +  A +++  +         +  
Sbjct: 107 IGGVLVLILFAVMLTNRITDINVSNTSFGLFGGFLLFVAGAPVLLAVALL----TPWQAG 162

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                    + IG    +++  P E++  +LL +++GAIV+  + 
Sbjct: 163 AAAPLAPTTQAIGDAFLSRWLLPFEVASLVLLSTLVGAIVIARKE 207


>gi|156584755|gb|ABU85209.1| NADH-plastoquinone oxidoreductase subunit 6 [Anethum graveolens]
          Length = 176

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL       +  ++L  + FVA   L++YVGA+ V  +F +M ++      + 
Sbjct: 31  NPIYSAFSLGLVLACTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138
                 +G     I+   + V     +  ++   +               +N + IG  L
Sbjct: 91  HL--WTVGDGVTSIVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDFISNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E+   ILL+++IGAI +  +
Sbjct: 149 STDFFLPFELISIILLVALIGAIAVARQ 176


>gi|290489862|gb|ADD31338.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Berberidopsis
           corallina]
          Length = 176

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    +  +  ++L  + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLICISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  +G     ++   + V     +  ++   +               +N + IG  
Sbjct: 90  FHL--WTIGDGVTSLVCTSIFVSLITTIPDTSWYGIIWTTRSNQIIEQDLISNSQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+++IGAI +  +
Sbjct: 148 LSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|312890387|ref|ZP_07749924.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603]
 gi|311297157|gb|EFQ74289.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603]
          Length = 165

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 98/165 (59%), Gaps = 2/165 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  +F++I+ + LV+  +NP++SV  LI  F      ++LL A+F+A++  +VY+GA+
Sbjct: 3   LFYFVAFLSILFALLVIFSKNPVHSVLYLILTFFTFTIHYILLNAQFLAIVNFIVYMGAI 62

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V FLF++M+L++  E +EP K      +  IG     LI  A++F V      ++    
Sbjct: 63  MVLFLFVLMLLNL-NEDSEPVKTSMVKFAAIIGG-GCLLITLAASFKVVHPSSVVALTND 120

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
               V+N+GKVL+ ++  P E+S  +L  +M+GA++L  + + ++
Sbjct: 121 NLGLVKNLGKVLFNEFLLPFEVSSLLLFSAMVGAVLLATKDKSNV 165


>gi|290489858|gb|ADD31336.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Nerium
           oleander]
          Length = 176

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M            I+    VV + NPIYS FSL    V  +  ++LL + FVA   L++Y
Sbjct: 7   MHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCISLFYILLSSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF +M +       + R     +G     ++   L +     +  ++   + 
Sbjct: 67  VGAVNVLILFAVMFMSGSEYYKDSRL--WTVGDGVTSMVCTSLFISLITTIPDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 125 WTTRSNQVLEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|108773182|ref|YP_635692.1| NADH dehydrogenase subunit 6 [Solanum tuberosum]
 gi|122196327|sp|Q27RZ6|NU6C_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|88656857|gb|ABD47110.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum tuberosum]
          Length = 176

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    +  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLICTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135
             K   L +   GI +   I    + +   ++     +++             +N + IG
Sbjct: 86  YYKDFHLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             L T +  P E+   ILL+++IGAI +  +
Sbjct: 146 IHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|309322278|ref|YP_003934356.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa]
 gi|197131416|gb|ACH47226.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa]
 gi|300069371|gb|ADJ66491.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa]
          Length = 178

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 8/149 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL   F+  +  F+L    FVA   L++YVGA+ V  LF +M ++       
Sbjct: 30  TNPIFSAFSLGLVFICISFFFILANCHFVAAAQLLIYVGAINVLILFAVMFMNSSEYAKS 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  LG+    ++   L +   + ++ ++   +               +N + IG  
Sbjct: 90  KDLHLRTLGAGATSLVCTTLFLSIISNILDTSWYGIIWTTRANQILEKDLISNSQQIGIR 149

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+++IGAI    +
Sbjct: 150 LSTDFYLPFELISIILLVALIGAIAAARQ 178


>gi|183217792|ref|YP_001837412.1| NADH dehydrogenase subunit 6 [Guizotia abyssinica]
 gi|221272325|sp|B2LMP5|NU6C_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|179366307|gb|ACB86578.1| NADH-plastoquinone oxidoreductase subunit 6 [Guizotia abyssinica]
          Length = 176

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 10/148 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M ++      + 
Sbjct: 31  NPIYSAFSLGLVFVCISLFYILANSHFVAAAQLLIYVGAINVLIIFAVMFINGSEYSKDF 90

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138
                 +G     ++   L V     +  ++   +               +N + IG  L
Sbjct: 91  HL--WTVGDGVTSVVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E    ILL+++IGAI +  +
Sbjct: 149 STDFFLPFEFISIILLVALIGAIAVARQ 176


>gi|11466018|ref|NP_054560.1| NADH dehydrogenase subunit 6 [Nicotiana tabacum]
 gi|78102601|ref|YP_358740.1| NADH dehydrogenase subunit 6 [Nicotiana sylvestris]
 gi|81301631|ref|YP_398926.1| NADH dehydrogenase subunit 6 [Nicotiana tomentosiformis]
 gi|14194987|sp|Q32722|NU6C_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|122212870|sp|Q33BW9|NU6C_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|122213586|sp|Q3C1Q1|NU6C_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|2924281|emb|CAA77434.1| NADH dehydrogenase ND6 subunit [Nicotiana tabacum]
 gi|77799628|dbj|BAE46717.1| NADH dehydrogenase ND6 subunit [Nicotiana sylvestris]
 gi|80750990|dbj|BAE48066.1| NADH dehydrogenase ND6 subunit [Nicotiana tomentosiformis]
          Length = 176

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135
             K   L +   GI +   I    + +   ++     +++             +N + IG
Sbjct: 86  YYKDFHLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFISNSQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             L T +  P E+   ILL+++IGAI +  +
Sbjct: 146 IHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|160886843|ref|ZP_02067846.1| hypothetical protein BACOVA_04857 [Bacteroides ovatus ATCC 8483]
 gi|299148401|ref|ZP_07041463.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 3_1_23]
 gi|156107254|gb|EDO08999.1| hypothetical protein BACOVA_04857 [Bacteroides ovatus ATCC 8483]
 gi|298513162|gb|EFI37049.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 3_1_23]
          Length = 170

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 7/159 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V ++F I++   + + AE  K+   L      I    +I+  +    F    + 
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKAKRSKLLAGLITMIAGLAIILTITLKHNFM---QT 120

Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLS 156
           + L     N+  IG  L +     Y  P E    +LL  
Sbjct: 121 ANLAPHEINIHAIGNALLSSDKYGYILPFEAVSILLLAC 159


>gi|148653488|ref|YP_001280581.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Psychrobacter sp. PRwf-1]
 gi|148572572|gb|ABQ94631.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Psychrobacter sp. PRwf-1]
          Length = 234

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 77/148 (52%), Gaps = 8/148 (5%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FY    +AII+S  V+ + NP++++ S+I + +  AG+F ++GA F   + ++VY GA++
Sbjct: 15  FYALGLVAIIASLRVIMLANPVHAILSMIVSLLALAGIFFIIGAPFAGALQVIVYAGAIL 74

Query: 68  VFFLFIIMMLDIDIEVAEPRKK------RGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           V F+F+IMML++ ++                  +    I      + +    V +A+G +
Sbjct: 75  VLFVFVIMMLNLGVKNDARESLWLSSDVWAVPAALSFVIAVVLGYILSLGNGVHNADGTV 134

Query: 122 SRLVFKGNNV--ENIGKVLYTQYAYPLE 147
           ++ +     +  + +G  L+T+Y   +E
Sbjct: 135 AQAMIGAQTISAKQVGIALFTEYLLLVE 162


>gi|313199752|ref|YP_004021366.1| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao]
 gi|309321316|gb|ADO64859.1| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao]
 gi|328924831|gb|ADO64942.2| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao]
          Length = 176

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  +G+    ++   ++V     ++ ++   +               +N + IG  
Sbjct: 90  FNL--WTIGNGVTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E    ILL+++IGAI +  +
Sbjct: 148 LATDFFLPFEFISIILLVALIGAIAVARQ 176


>gi|114804316|ref|YP_762313.1| NADH-plastoquinone oxidoreductase subunit 6 [Morus indica]
 gi|122166758|sp|Q09WW5|NU6C_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|78100368|gb|ABB21009.1| NADH-plastoquinone oxidoreductase subunit 6 [Morus indica]
          Length = 176

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  + L++L  + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLLYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 86  PRKK------RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
                        + +   G+L   +   +   ++++            +N + IG  L 
Sbjct: 90  FNLWTVGNGFTLLICTSIFGLLITTITDTSWYGIIWTTRSNQIIEHDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E    ILL ++IGAI +  +
Sbjct: 150 TDFFLPFEFISIILLAALIGAITVARQ 176


>gi|332830197|gb|EGK02825.1| hypothetical protein HMPREF9455_01075 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 167

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 89/168 (52%), Gaps = 3/168 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M S+ FY+ + + I +  L V  +NPI+S   +I  F + +G FLLL A F+A++ +VVY
Sbjct: 1   MISVIFYILAAITIGTGILTVISKNPIHSAVYMIICFFSISGHFLLLNALFLAVVNIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GA++V  LF +M++++  +    +K       +    ++   L+             + 
Sbjct: 61  AGAIMVLLLFTLMLMNLSEQHEPKKKVISRVAATVSSCLMGIVLLAALIKSAPVVETYKA 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             L ++  N+  IG+VL  +Y  P E +  +L+ +MIGA+++  + ++
Sbjct: 121 EGLDYQSVNI--IGQVLLDEYLVPFEFASILLITAMIGAVLISKKEKK 166


>gi|53804531|ref|YP_113812.1| NADH dehydrogenase I, J subunit [Methylococcus capsulatus str.
           Bath]
 gi|53758292|gb|AAU92583.1| NADH dehydrogenase I, J subunit [Methylococcus capsulatus str.
           Bath]
          Length = 164

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FYL + +A+ ++F+VV   N ++++  LI + + +  +F LLGA F A++ +++Y
Sbjct: 1   MELILFYLSALVAVAATFMVVIQCNTVHALLYLIVSLLASGFIFYLLGAFFAAVLEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA+IV F+F++MML++  +  E  ++    G +        ++     F++  +    +
Sbjct: 61  AGAIIVLFVFVVMMLNLGSKTIEQERQWLCPGIWHGPAALCAILFAELLFILMRSGTHEA 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
             +      + +G  L+  Y   +E +  +LL  ++GA  L  
Sbjct: 121 GRIVDS---KALGIALFGPYLLAVETASMLLLAGLVGAYHLGR 160


>gi|91209042|ref|YP_538903.1| NADH dehydrogenase subunit 6 [Solanum bulbocastanum]
 gi|122201800|sp|Q2MID4|NU6C_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|84371949|gb|ABC56267.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum bulbocastanum]
          Length = 176

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135
             K   L +   GI +   I    + +   ++     +++             +N + IG
Sbjct: 86  YYKDFHLWTVGNGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             L T +  P E+   ILL+++IGAI +  +
Sbjct: 146 IHLSTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|89895328|ref|YP_518815.1| NADH dehydrogenase I chain J [Desulfitobacterium hafniense Y51]
 gi|89334776|dbj|BAE84371.1| NADH dehydrogenase I chain J [Desulfitobacterium hafniense Y51]
          Length = 163

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 87/160 (54%), Gaps = 4/160 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F++F+ +A+ S++ VVT +N ++S F L  +F   A L++LL AE++A + L+VY GA+
Sbjct: 1   MFFIFAIIAVASAWGVVTSKNIVHSAFFLALSFAGVAVLYVLLNAEYLAAVQLLVYAGAI 60

Query: 67  IVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
            +  +F +M+ L  D+  + P  K+   G+    ++    IV A   +  S    L+   
Sbjct: 61  SIMVIFAVMLTLRGDVAESSPVTKKWTQGALVSALVF---IVLALVILTNSDWRILAMPA 117

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
             G     + K+L + Y  P E +  ++ +++IGA+++  
Sbjct: 118 LAGGTTVELSKLLLSWYMVPFEAAAILITVALIGAVIIAK 157


>gi|253698807|ref|YP_003019996.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M21]
 gi|251773657|gb|ACT16238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M21]
          Length = 160

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 5/165 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+ + + +I +   +T R  + ++  L+ +F   A +F LLGA FVA + +++Y
Sbjct: 1   MERIIFYILAAVTVIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPFVAALEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IMM+    E+A P K      S +   L   L+V AS  ++ + +    
Sbjct: 61  AGAIMVLFLFVIMMV----ELASPEKLPKPTLSDWWPALILVLVVVASLTVLVAGQAPPV 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                   V    +VL+T+Y   +E+    LL +++GA+ L  R 
Sbjct: 117 PGAGAQT-VRQFSQVLFTRYGVAIELVSMQLLFALVGALYLGRRR 160


>gi|290489848|gb|ADD31331.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ehretia
           acuminata]
          Length = 176

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-------I 79
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
            +             S FI ++   L       +  +   ++       +N + IG  L 
Sbjct: 91  HLWTVGDGVTSMVCTSLFISLITTILDTSWYGIIWTTKSNQIIEQDL-ISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E    ILL+++IGAI +  +
Sbjct: 150 TDFFLPFEFISIILLVALIGAIAVARQ 176


>gi|313896077|ref|ZP_07829631.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|320529343|ref|ZP_08030431.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           artemidis F0399]
 gi|312975502|gb|EFR40963.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|320138309|gb|EFW30203.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           artemidis F0399]
          Length = 164

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 3/161 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S  FY+ + + +I +  VV   N ++S   L+ +F+  A ++  +GAEF+  + L+VY G
Sbjct: 2   SFIFYVLAAITVIGALGVVLSPNVVHSALFLVVSFIGVASMYFYIGAEFLGAVQLMVYSG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV V  +  IM+   D  +A     +        G+LA          +V +   +   +
Sbjct: 62  AVAVLIVMAIMLTRRD-SMAHSNPSQKLFRRVVTGLLAGGFFFLMGLGIVLAPMPD--GM 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
           +        I  ++   Y  P EI   +LL +MIGA++L  
Sbjct: 119 LGAPTGAHEIAALMLGAYVLPFEIGAVLLLAAMIGALLLAR 159


>gi|254032046|ref|YP_001023796.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ10101]
          Length = 211

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 60/181 (33%), Positives = 86/181 (47%), Gaps = 45/181 (24%)

Query: 31  SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
           SVF LI  F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+  + E  +  +  
Sbjct: 26  SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGEKERKKGEETG 85

Query: 91  GF----LGSFFIGILAAELIVCASNFMVFSAEGE-------------------------- 120
                 +G    GILAAEL     + ++ + E                            
Sbjct: 86  RIGTPAIGILIGGILAAELASAVPDSIIKNYELTNILSDRNRDKSGLIGSEKESITTGIK 145

Query: 121 ---------------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                          L+     G N+E IGKVLY  Y Y   +  FILL++MIGAIVL L
Sbjct: 146 NNIETGYPYDYFDYFLTLNGSGGTNMEAIGKVLYINYYYAFILVSFILLVAMIGAIVLGL 205

Query: 166 R 166
           +
Sbjct: 206 Q 206


>gi|161784246|ref|YP_001595562.1| NADH dehydrogenase ND6 subunit [Lemna minor]
 gi|221272328|sp|A9L9F0|NU6C_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|88696824|gb|ABD48549.1| NADH dehydrogenase ND6 subunit [Lemna minor]
          Length = 177

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 25  VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84
             NPIYS FSL    +  +  ++LL + FVA   L++YVGA+ V  LF +M +       
Sbjct: 29  FTNPIYSAFSLGLVLICVSLFYILLNSYFVAAAQLLIYVGAINVLILFAVMFM--KGSEY 86

Query: 85  EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGK 136
                   +G     ++   ++    + +  ++   +               +NV+ IG 
Sbjct: 87  SNDLNLWTVGDGVTSLVCTSILFLLISTISDTSWYGIIWTTKANHIIEQDLISNVQQIGI 146

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            L T +  P E+   ILL+++IGAI +  +
Sbjct: 147 HLSTDFFLPFELISIILLVALIGAISMARQ 176


>gi|320160453|ref|YP_004173677.1| putative NADH-quinone oxidoreductase subunit J [Anaerolinea
           thermophila UNI-1]
 gi|319994306|dbj|BAJ63077.1| putative NADH-quinone oxidoreductase chain J [Anaerolinea
           thermophila UNI-1]
          Length = 172

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 5/174 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + F L + + + S+ +VV  R  I+S F LI A    A  F  L A F A+I + 
Sbjct: 1   MSALQIVFLLIALLTLFSASMVVFARKTIHSAFWLILALFGVAATFATLEASFFAVIQVA 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG 119
           VY+GA+ +  +F +M+    +E    +   G+   +  + I    +I     +       
Sbjct: 61  VYIGAIAILIIFAVMLTRRSMEETGDQLLPGWGWAALVVLIAFGGIIYLLLQWQGVFQAP 120

Query: 120 ELSRLVFKGNNVENIGKVLY--TQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
           ++  L   G N+E +G  L    +Y  P E++  +L+ +MIGAI +    ++  
Sbjct: 121 QV--LTAGGENLEALGIALVMPDRYVIPFEVASVLLVAAMIGAIYVAGDLKKRS 172


>gi|94502543|ref|YP_588170.1| NADH dehydrogenase subunit 6 [Helianthus annuus]
 gi|281190757|ref|YP_003330996.1| NADH dehydrogenase subunit 6 [Parthenium argentatum]
 gi|122179550|sp|Q1KXQ6|NU6C_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|88656947|gb|ABD47198.1| NADH-plastoquinone oxidoreductase subunit 6 [Helianthus annuus]
 gi|269924870|gb|ACZ52743.1| NADH dehydrogenase subunit 6 [Parthenium argentatum]
          Length = 176

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 10/148 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL   FV  +  ++L  + FVA   L++YVGA+ V  +F +M ++      + 
Sbjct: 31  NPIYSAFSLGLVFVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFINGSEYSKDF 90

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138
                 +G     ++   L V     +  ++   +               +N + IG  L
Sbjct: 91  HL--WTVGDGVTSVVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E    ILL+++IGAI +  +
Sbjct: 149 STDFFIPFEFISIILLVALIGAIAVARQ 176


>gi|95928464|ref|ZP_01311212.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135735|gb|EAT17386.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Desulfuromonas acetoxidans DSM 684]
          Length = 174

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 3/169 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +    FY F  +  +  F+ V  R  +++V  L  +    AGL+  LG+ F+AM+ +++Y
Sbjct: 7   IAEALFYAFMILTFMGGFMAVRSRMLMHAVLGLAVSLFGVAGLYFHLGSPFLAMMQILIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV +  +  +M+ +   +++  +  R  +    + + A           +   +   +
Sbjct: 67  VGAVCIMIVLGVMLGNTPDQLSSDKLSRRNM---LLALGACSTGFVTLFIAIQQTKFAPA 123

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                  ++  IG+ L  +Y    E+   ILL ++IGAI+L    R ++
Sbjct: 124 AEKIGDMSIRFIGENLLFKYCLAFELISVILLTAIIGAIILARGGREEV 172


>gi|41582338|gb|AAS07952.1| NADH-quinone oxidoreductase, J subunit [uncultured marine bacterium
           463]
          Length = 169

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FY+ + +A+ S+   +T  N  +++  LI + +  A +F L+GA F A + +V+Y
Sbjct: 1   MLATLFYIAALIALTSTMAALTRANAAHALIYLIVSLLAVAVMFFLMGAPFAAALEVVIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IMML++     +  ++     ++F+    A L++     ++  ++G  S
Sbjct: 61  AGAIMVLFVFVIMMLNLGDTGEDREREWLAGRNWFVPGAMAALLLIEMLMVLGDSQGVTS 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                    + +G  L+  Y   +EI+  +LL S++GA  L  R
Sbjct: 121 GNAVSP---KAVGIRLFGPYLLAVEIASMLLLSSLVGAYHLGRR 161


>gi|294056105|ref|YP_003549763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615438|gb|ADE55593.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Coraliomargarita akajimensis DSM 45221]
          Length = 193

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+FS + ++S+ L+V   + +     +I AF+  A LF+LL A  +A + +VVY
Sbjct: 1   MLDILFYVFSAITLLSALLMVVSPSAVNGALCMIVAFLGTAALFVLLEAYLLAALQVVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM--------- 113
            GAV+V FLFIIM+LD+D        K            A  +I+  + F+         
Sbjct: 61  AGAVMVLFLFIIMLLDVDKGAGASDMKDKVSLGAASMGFALVVILVTTLFIGSGQLPEPE 120

Query: 114 ---VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                +     +        +++ G  L+T+Y  P +++GF+LL  M+G IV+  +
Sbjct: 121 LRDTVANPTGATGGFEFSTAMKSFGYSLFTKYMLPFQVAGFLLLAGMVGVIVVSKK 176


>gi|149390319|ref|YP_001294150.1| NADH-plastoquinone oxidoreductase subunit 6 [Chloranthus spicatus]
 gi|221272316|sp|A6MMH4|NU6C_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|146744239|gb|ABQ43311.1| NADH-plastoquinone oxidoreductase subunit 6 [Chloranthus spicatus]
          Length = 176

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI S FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPISSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLIVFAVMFMNGSEYYND 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--------GNNVENIGKV 137
                  +G  F  ++   ++      +  ++   +               +NV+ IG  
Sbjct: 90  FHL--WTIGDGFTSLVCTSILFSLITTIPDTSWYGIIWTTRSNQIIEQDLTSNVQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+++IGAI +  +
Sbjct: 148 LSTDFYLPFELISIILLVALIGAIAMARQ 176


>gi|114107186|ref|YP_740170.1| NADH-plastoquinone oxidoreductase subunit 6 [Daucus carota]
 gi|122221298|sp|Q0G9Q9|NU6C_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|113200961|gb|ABI32477.1| NADH-plastoquinone oxidoreductase subunit 6 [Daucus carota]
          Length = 176

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-------I 79
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
            +             S F+ ++           +  +   ++       +N + IG  L 
Sbjct: 91  HLWTVGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDL-ISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+S+IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVSLIGAITVARQ 176


>gi|227537462|ref|ZP_03967511.1| possible NADH dehydrogenase (quinone) [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227242736|gb|EEI92751.1| possible NADH dehydrogenase (quinone) [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 182

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 12/181 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ L FY F+ +AI S+ LVV ++N   ++F         AGL+L   A+FVA+  ++
Sbjct: 1   MTLEELLFYAFAALAIGSALLVVNLKNTARALFLFFIVLFAMAGLYLFALADFVAITQIM 60

Query: 61  VYVGAVIVFFLFIIMMLDID----------IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           VYVG V++  +F  M+ + +            +  P  +   L S F+ I+   ++   S
Sbjct: 61  VYVGGVLILMIFAFMLSNKELLKDLQHASGKFLTLPNWQSLILSSVFLIIMITAVVEWQS 120

Query: 111 NFMVFSAEGELSRLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               +  +  ++  +     NN++ +G    TQY  P E+ G  L++++IGA  L  +  
Sbjct: 121 EVPAWIEQARINNTLIHPSDNNIQQLGFKFMTQYILPFELIGIFLMMTLIGAAHLSRKED 180

Query: 169 R 169
           +
Sbjct: 181 K 181


>gi|328952914|ref|YP_004370248.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453238|gb|AEB09067.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 173

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 4/169 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            + +L F     +    + + V  RN  ++V  L  +    AG+F+ L + F+AM+ +++
Sbjct: 6   DLSNLSFLGVLAVTFGGAIIAVGARNIFHNVLGLALSLFGVAGIFVYLNSPFLAMMEILI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA+ +   F IM+ +       PRK     G+     L A ++    + ++   +   
Sbjct: 66  YVGAICIAICFAIMLSEPLYLPKPPRKPLKIAGAG----LGAGVVFLMLSLLIKKTDWIP 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           + +     ++  IG  L T+YA   E+   +LL++M+GAIV     R  
Sbjct: 122 ASVRGDDWSIATIGHYLLTRYALIFEVISLVLLVAMLGAIVNARNGRNR 170


>gi|325126918|ref|YP_004286155.1| NADH-plastoquinone oxidoreductase subunit 6 [Fragaria vesca subsp.
           vesca]
 gi|324022830|gb|ADY15404.1| NADH-plastoquinone oxidoreductase subunit 6 [Fragaria vesca subsp.
           vesca]
          Length = 176

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+    VV   NPIYS FSL    V  +  ++LL + FVA    ++Y
Sbjct: 7   IHDFLLIFLGSGLILGGIGVVLFTNPIYSAFSLGLVLVCISLFYILLNSYFVAAAQFLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK---RGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VGA+ V  +F +M ++      +        G        I    +I             
Sbjct: 67  VGAINVLIVFAVMFMNGSEYYQDFNLWTVGAGITLPVCTSIFVLLMITITDTSWYGIIWT 126

Query: 120 ELSRLVFK---GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             S  + +    +N + IG  L T +  P E    ILL+++IGAI +  +
Sbjct: 127 TRSNQIIEQDLISNSQQIGIHLSTDFFLPFEFISIILLVALIGAIAVARQ 176


>gi|290489856|gb|ADD31335.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Nelumbo
           nucifera]
          Length = 176

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 8/148 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78
            NPIYS FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYND 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
             +             S F  ++   L       +  +   ++       +N + IG  L
Sbjct: 90  FHLWTIGDGVTSLVCTSIFFSLITTILDTSWYGIIWTTRSNQIIEQDL-ISNGQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E+   ILL+++IGAI +  +
Sbjct: 149 STDFFLPFELISIILLVALIGAIAMARQ 176


>gi|110598461|ref|ZP_01386732.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339911|gb|EAT58415.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium
           ferrooxidans DSM 13031]
          Length = 173

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FY+F+ + ++S+  VV  RN IYS F+L+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 8   TVIFYIFAAITVLSAAFVVFTRNVIYSAFALLFTFFGVAALYVFLSADFIAVTQVVVYVG 67

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V  LF +M  +    +   + K   L      +L   +I         +     S  
Sbjct: 68  GILVLLLFGVMFTN---SIMNAKPKSDVLHIIPGTLLLLAMIGALLYTFYTTHSWMPSET 124

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGF 151
           + +G+ VE IG    ++Y  P E++  
Sbjct: 125 MLQGSIVERIGFETMSRYVLPFEMASI 151


>gi|323148880|ref|YP_004221972.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium carvifolium]
 gi|316926344|gb|ADU58197.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium carvifolium]
          Length = 179

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78
            N IYS FSL   F+  +  ++L    FVA   L++YVGA+ +  LF +M ++       
Sbjct: 30  TNLIYSAFSLGLVFICISLFYILANCHFVAAAQLLIYVGAINILILFAVMFINGSEYSKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
                           + F+ +++  L       +  +   ++       +N + IG  L
Sbjct: 90  FHFGTVGDGATSLVCTTLFLSLISNILNTSWYGVIWTTKAAQIIEKDL-ISNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            T +  P E+   ILL+++IGAI +  +  
Sbjct: 149 STDFFLPFELISIILLVALIGAISVARQQT 178


>gi|332669458|ref|YP_004452466.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas
           fimi ATCC 484]
 gi|332338496|gb|AEE45079.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas
           fimi ATCC 484]
          Length = 325

 Score =  103 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 83/167 (49%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             +++ F++ + + ++++  ++  R  +++  +++   ++ A L++   A F+ ++ +VV
Sbjct: 24  TGETVLFWVLAPIMVLAALGLLFARKAVHAALAVVVVMISLAFLYVAQDAVFLGVVQVVV 83

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV++ FLF++M++ +D   +     RG      +  +   +++            + 
Sbjct: 84  YTGAVMMLFLFVLMLVGVDASDSLVETIRGQRWIGALAGIGLGVVLAGVVGRAAYGPSQG 143

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + +N   I  +++ +Y    E+ G +L+ + +GA+V   R R
Sbjct: 144 LDSANEASNPVAIAHLVFGEYVLAFEVVGALLVTAALGALVYTHRTR 190


>gi|292559559|ref|YP_003540986.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera]
 gi|290790967|gb|ADD63222.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera]
 gi|294620632|gb|ADF28201.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera]
          Length = 176

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIFSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYSND 89

Query: 86  PRKK---RGFLGSFFIGILAAEL-IVCASNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139
                   G        IL + + I+  +++         S+++ +   +N++ IG  L 
Sbjct: 90  SYFWTIGDGVTSLVCTSILFSLITIIPDTSWYGIFWTTRSSQIIEQDLISNIQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+S+IGAI +  +
Sbjct: 150 TDFYLPFELISIILLVSLIGAITMARQ 176


>gi|78186624|ref|YP_374667.1| NADH dehydrogenase I subunit 6 [Chlorobium luteolum DSM 273]
 gi|78166526|gb|ABB23624.1| NADH dehydrogenase subunit J [Chlorobium luteolum DSM 273]
          Length = 177

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +  FYLF+ + ++S+  VV  RN IYS FSL+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 7   TAIFYLFAAITVLSAAFVVFSRNIIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V  LF +M  +   +V     K   L      +L    +         +     S  
Sbjct: 67  GILVLLLFGVMFTN---KVMTTDLKADVLNVVPGALLFLGTLAGLLYTFYTTNGWMPSET 123

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGF 151
           + +G+ VE IG    +++  P E++  
Sbjct: 124 MLEGSVVERIGFETMSRFVLPFEMASI 150


>gi|300770867|ref|ZP_07080744.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762140|gb|EFK58959.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 182

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ L FY F+ +AI S+ LVV ++N   ++F         AGL+L   A+FVA+  ++
Sbjct: 1   MTLEELLFYAFAALAIGSALLVVNLKNTARALFLFFIVLFAMAGLYLFALADFVAITQIM 60

Query: 61  VYVGAVIVFFLFIIMMLDID----------IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           VYVG V++  +F  M+ + +            +  P  +   L S F+ I+   ++   S
Sbjct: 61  VYVGGVLILMIFAFMLSNKELLKDLQHASGKFLTLPNWQSLILSSAFLIIMITAVVEWQS 120

Query: 111 NFMVFSAEGELSRLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               +  +  ++        NN++ +G    TQY  P E+ G  L++++IGA  L  +  
Sbjct: 121 EVPAWIEQARINNTFIRPSDNNIQQLGFKFMTQYILPFELIGIFLMMTLIGAAHLSRKED 180

Query: 169 R 169
           +
Sbjct: 181 K 181


>gi|284042624|ref|YP_003392964.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Conexibacter
           woesei DSM 14684]
 gi|283946845|gb|ADB49589.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Conexibacter
           woesei DSM 14684]
          Length = 244

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F++ +  A+  +  VV +RNP YSV +L+   ++ + LFLLL AEF+A   ++VY
Sbjct: 1   MAEVIFFIAAIGALSGAIGVVALRNPFYSVLALVGHLLSLSALFLLLRAEFLAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV V ++F++  + D  + +     +   +   F+G+L  EL +      + + +GE 
Sbjct: 61  AGAVTVLYVFVVSYVGDGTVPLGPGGARLRNVAMLFVGMLFVELCIALLGSGLKAIDGEG 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147
           +  V      E+IG+ L T++  P E
Sbjct: 121 APYVPGFGTPESIGEALLTKFLLPFE 146


>gi|290489872|gb|ADD31343.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Gunnera
           manicata]
          Length = 176

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 8/149 (5%)

Query: 25  VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------ 78
             NPIYS FSL    V  + L++   + FVA   L++YVGA+ V  +F +M ++      
Sbjct: 29  FTNPIYSAFSLGLVLVCISLLYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYK 88

Query: 79  -IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKV 137
                            S F+ ++           +  +   ++       +N++ IG  
Sbjct: 89  DFHFWTVGDGVTSLVCTSIFVSLITTISDTSWYGIIWTTRSNQIIEQDL-ISNIQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+++IGAI +  +
Sbjct: 148 LLTDFFLPFELISIILLVALIGAISVARQ 176


>gi|326772142|ref|ZP_08231427.1| NADH dehydrogenase I, J subunit [Actinomyces viscosus C505]
 gi|326638275|gb|EGE39176.1| NADH dehydrogenase I, J subunit [Actinomyces viscosus C505]
          Length = 328

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 81/171 (47%), Gaps = 4/171 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F + + + +     V+T +  + +  ++I   ++ A L+++  + F+ +  +VVY 
Sbjct: 22  EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 81

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+   LF+IM++ +  +  EP    G +    + IL    +  A   +V+ +      
Sbjct: 82  GAVMTLVLFVIMLVGVGGD--EPVGAAGTVMRRPVLILLGLGLAGALTAVVWRSTLPKPA 139

Query: 124 LVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +  G       +   LY  +   +E++  +L+++ +GA+ L  R R   +
Sbjct: 140 GLKDGAKAAPDLLAVTLYHDHVVTMELTAILLIVAAVGALTLTHRQRIRAR 190


>gi|114329800|ref|YP_740618.1| NADH-plastoquinone oxidoreductase subunit 6 [Platanus occidentalis]
 gi|122165990|sp|Q09FZ3|NU6C_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|114054438|gb|ABI49832.1| NADH-plastoquinone oxidoreductase subunit 6 [Platanus occidentalis]
          Length = 176

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYND 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  +G     +L   + V     +  ++   +               +N + IG  
Sbjct: 90  FHL--WTVGDGVTSLLCTSIFVSLITTIPDTSWYGVIWTTRSNQIIEQDLISNGQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+++IGAI +  +
Sbjct: 148 LSTDFFLPFELISIILLVALIGAIAMARQ 176


>gi|27464565|gb|AAO16136.1| NADH dehydrogenase subunit 6 [Alcyonium variabile]
          Length = 147

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+E IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLMLRHRRDI----------KRQDISKQLESN 183
           +L  +    +           RQD+  Q+   
Sbjct: 114 LLAKQPNSPVLYNSHSESLRSRQDLFLQISRE 145


>gi|149390496|ref|YP_001294324.1| NADH-plastoquinone oxidoreductase subunit 6 [Illicium oligandrum]
 gi|221272326|sp|A6MMZ8|NU6C_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|147917449|gb|ABQ52573.1| NADH-plastoquinone oxidoreductase subunit 6 [Illicium oligandrum]
          Length = 177

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 8/172 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +F        I+    VV + NP+YS FSL    V  +   +   + FVA   L++Y
Sbjct: 7   IHDIFLVFLGSGLILGGLGVVLLTNPVYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  +F +M ++         +             S    ++   L       +  
Sbjct: 67  VGAINVLIVFAVMFMNGSEYYNYFHLWTVGDGVTSLICTSILFSLIKTILDTSWYGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +   ++       +NV+ IG  L T +  P E+   ILL++++GAI +  + 
Sbjct: 127 TRSNQIIEQDL-ISNVQQIGIHLSTDFYLPFELISIILLVALVGAIAMARQE 177


>gi|255019916|ref|ZP_05291991.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970696|gb|EET28183.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus
           ATCC 51756]
          Length = 198

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 76/194 (39%), Positives = 113/194 (58%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ +L FY+FS + ++S+ LV+T RNP+Y+   L+ AF NAA LFLLLGAEF+ +I ++
Sbjct: 1   MLVTTLLFYVFSAILLLSALLVITARNPVYASLYLVLAFFNAAALFLLLGAEFLGLILIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V FLF++MMLDI++   +            + IL    +              
Sbjct: 61  VYVGAVMVLFLFVVMMLDINLARLQEGFLHYLPLGLAVAILGVLELAAVFWTAPLGHVPA 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
            + L    +N   +G +LYTQY YP EI+  ILL+++I AI L LR R   K QDI +QL
Sbjct: 121 PAALPANADNTRALGGLLYTQYLYPFEIAAVILLIAIIAAIALTLRRRPQSKTQDIGRQL 180

Query: 181 ESNPDNSIVMVKVK 194
                  + +V ++
Sbjct: 181 AVKVSERLRLVDLR 194


>gi|110227131|ref|YP_665609.1| NADH dehydrogenase subunit 6 [Populus alba]
 gi|134093259|ref|YP_001109560.1| NADH dehydrogenase subunit 6 [Populus trichocarpa]
 gi|122237031|sp|Q14FA5|NU6C_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272342|sp|A4GYW9|NU6C_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|109945569|dbj|BAE97257.1| NADH dehydrogenase subunit 6 [Populus alba]
 gi|133712121|gb|ABO36764.1| NADH-plastoquinone oxidoreductase chain 6 [Populus trichocarpa]
          Length = 176

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M ++      +
Sbjct: 30  TNPIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89

Query: 86  PRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKVLY 139
                    L S     L   LI   SN   +                 +N + IG  L 
Sbjct: 90  FNLWTVGNGLTSLICTSLFVLLITIISNTTWYGIIWTTRANQIIEQDLVSNGQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E    ILL+++IGAI    +
Sbjct: 150 TDFFLPFEFISIILLVALIGAIATARQ 176


>gi|115531974|ref|YP_784130.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium x
           hortorum]
 gi|122164265|sp|Q06FQ1|NU6C_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|112382128|gb|ABI17321.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium x
           hortorum]
          Length = 176

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+    VV + NPIYS FSL F F+  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFLLVFLGSGIILGGLGVVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFS--AE 118
           VGA+ V  LF +M ++      +         L S    IL   LI    +   +     
Sbjct: 67  VGAINVLILFAVMFMNGSEYYKDFHLWTLGDGLTSLICTILFLSLITTILDTSWYGILWT 126

Query: 119 GELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            + ++++ K   +N + +G +L T +  P E+   ILL++++GAI    +
Sbjct: 127 TKSNQIIEKDFISNSQQLGILLSTDFFLPFELMSIILLVALLGAIAAARQ 176


>gi|226953544|ref|ZP_03824008.1| NADH dehydrogenase I subunit J [Acinetobacter sp. ATCC 27244]
 gi|226835722|gb|EEH68105.1| NADH dehydrogenase I subunit J [Acinetobacter sp. ATCC 27244]
          Length = 173

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5   FYLMALVAIVSTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF- 126
           V F+F++MML++  +  E   K     ++    L + L+     +M+ S       ++  
Sbjct: 65  VLFVFVVMMLNLGQDTVEQESKWLTSDAWAFPALMSFLMGLILVWMLGSDYTTTGAVMGR 124

Query: 127 KGNNVENIGKVLYTQYAYPLEI 148
           +    + +G+ L+T Y   +EI
Sbjct: 125 EVVGPKAVGQALFTHYLLLVEI 146


>gi|116617161|ref|YP_817535.1| NADH-plastoquinone oxidoreductase subunit 6 [Coffea arabica]
 gi|122153672|sp|A0A388|NU6C_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|116242217|gb|ABJ89732.1| NADH-plastoquinone oxidoreductase subunit 6 [Coffea arabica]
          Length = 176

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-------I 79
           NPIYS FSL F  V  +  ++LL + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGFVLVCISLFYILLNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
            +               FI ++     +     +  +   ++        N + IG  L 
Sbjct: 91  HLWTIGDGVTSVVCTGLFISLITTIPDMSWYGIIWTTKSNQILEQDL-ITNSQQIGVHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELVSIILLVALIGAIAVARQ 176


>gi|156598690|gb|ABU85600.1| NADH-plastoquinone oxidoreductase subunit 6 [Scaevola aemula]
          Length = 176

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 6/146 (4%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N I S FSL F  V  +  ++L  + FVA   L++YVGA+ V  +F +M ++      + 
Sbjct: 31  NSIDSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFINSSENSKDF 90

Query: 87  RKKR--GFLGSFFIGILAAELIVCA--SNFMVFSAEGELSRLVFKG--NNVENIGKVLYT 140
           R       + S     L   LI     +++       + ++++ +   +N + IG  L T
Sbjct: 91  RLWTVGDGVTSLVCTSLFLSLITTIPDTSWYRIIWTTKANQIIEQDLISNSQQIGIHLST 150

Query: 141 QYAYPLEISGFILLLSMIGAIVLMLR 166
            +  P E    ILL+++IGAIVL  +
Sbjct: 151 DFFLPFEFISIILLVALIGAIVLARQ 176


>gi|169794125|ref|YP_001718489.1| NADH dehydrogenase subunit 6 [Manihot esculenta]
 gi|221272332|sp|B1NWK2|NU6C_MANES RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|157695937|gb|ABV66206.1| NADH-plastoquinone oxidoreductase subunit 6 [Manihot esculenta]
          Length = 176

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  +GS    ++   + V     +  ++   +               +N + IG  
Sbjct: 90  FNL--WTVGSGVTSLVCTSIFVSLITIIPDTSWYGIIWTTKTNQIIEQDLISNGQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E    ILL+++IGAI +  +
Sbjct: 148 LSTDFFLPFEFISIILLVALIGAIAVARQ 176


>gi|326909443|ref|YP_004327714.1| NADH dehydrogenase subunit 6 [Hevea brasiliensis]
 gi|308523557|gb|ADO33607.1| NADH dehydrogenase subunit 6 [Hevea brasiliensis]
          Length = 176

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  +GS    ++   + V     +  ++   +               +N + IG  
Sbjct: 90  FNL--WTVGSGVTSLVCTSIFVSLITILPDTSWYGIIWTTRTNQIIEQDLISNGQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E    ILL+++IGAI +  +
Sbjct: 148 LSTDFFLPFEFISIILLVALIGAIAVARQ 176


>gi|325210978|ref|YP_004286056.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium thurberi]
 gi|290775840|gb|ADD62336.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium thurberi]
          Length = 176

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  +G+    ++   ++V     ++ ++   +               +N + IG  
Sbjct: 90  FNL--WTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E    ILL+++IGAI +  +
Sbjct: 148 LATDFFLPFEFISIILLVALIGAIDVTRQ 176


>gi|322379667|ref|ZP_08053985.1| NADH dehydrogenase subunit J [Helicobacter suis HS5]
 gi|321147903|gb|EFX42485.1| NADH dehydrogenase subunit J [Helicobacter suis HS5]
          Length = 181

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            + + FY F+ + +  + +VV+  N +Y++ +L  + V  +G F LLGAEF+ ++ ++VY
Sbjct: 2   FEVIAFYFFAILTLSMALIVVSTSNILYAMSALAASMVFISGFFFLLGAEFLGVVQILVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119
           VGAVIV + F +M  +   EV E   K   +  + +G + A L+V        +      
Sbjct: 62  VGAVIVMYAFGMMFFNASEEVIERSHKPWLV--YILGGVFALLLVVILGAPALNNYAHHL 119

Query: 120 -----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                ++        NV ++G  ++T+Y    E  G +LL ++IG I   LR     +++
Sbjct: 120 SAENLQIVTPNLSTTNVHSMGYFVFTKYRIAFEAGGVMLLSALIGGITTALRKSYLSQKE 179

Query: 175 D 175
           +
Sbjct: 180 N 180


>gi|150406472|ref|YP_001315115.1| NADH dehydrogenase subunit 6 [Chlorokybus atmophyticus]
 gi|126507709|gb|ABO15106.1| NADH dehydrogenase subunit 6 [Chlorokybus atmophyticus]
          Length = 259

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 67/259 (25%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNA------------AGLFLL 48
           M  +   F +FS +A+IS  +V+  +NP++SV  LI  F +             A +FL+
Sbjct: 1   MTAEQTLFSIFSSVALISGIMVIRAKNPVHSVLFLILVFCSTSGLLLLLGLDFFAMVFLV 60

Query: 49  LGAEFVAMITLVVYV--------------------GAVIVFFLFIIMM---------LDI 79
           +    +A++ L V +                    G +   F+F +++         L I
Sbjct: 61  VYVGAIAVLFLFVVMMLNIKMAEITENLLRYLPVGGLIGFIFVFEVLLVVDNDLIPLLSI 120

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--------------------- 118
               A    +   + S F       LI    N   ++ +                     
Sbjct: 121 TKPRASLLTEYFQIYSTFFFQSFIALIRGKINLTEWNLDRHDLVNDLEQAITNLTTIFQG 180

Query: 119 ----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKR 173
                E    +    N+E IG+++YT Y Y   +S  ILL++MIGAI+L +    + +KR
Sbjct: 181 TIHHNEWVSKIHNVTNIEAIGQLVYTYYFYYFLMSSLILLVAMIGAILLTMHKGMKSVKR 240

Query: 174 QDISKQLESNPDNSIVMVK 192
           Q+I +Q       +I  ++
Sbjct: 241 QEIFEQNARQFSKTIQKIR 259


>gi|27464562|gb|AAO16134.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-NZ2]
          Length = 147

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+E IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLML----------RHRRDIKRQDISKQLESN 183
           +L                   RQD+  Q+   
Sbjct: 114 LLAKQPNSPFVYNPHGESLRSRQDLFLQISRE 145


>gi|294649468|ref|ZP_06726892.1| NADH-quinone oxidoreductase subunit J [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824638|gb|EFF83417.1| NADH-quinone oxidoreductase subunit J [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 173

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5   FYLMALVAIVSTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF- 126
           V F+F++MML++  +  E   K     ++    L + L+     +M+ S       ++  
Sbjct: 65  VLFVFVVMMLNLGQDTVEQESKWLTSDAWAFPALMSFLMGLILVWMLGSDYTTSGAVMGR 124

Query: 127 KGNNVENIGKVLYTQYAYPLEI 148
           +    + +G+ L+T Y   +EI
Sbjct: 125 EVVGPKAVGQALFTHYLLLVEI 146


>gi|254480852|ref|ZP_05094098.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           protein [marine gamma proteobacterium HTCC2148]
 gi|214038647|gb|EEB79308.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           protein [marine gamma proteobacterium HTCC2148]
          Length = 169

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 3/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  FY+ + +A+ S+   +T  N  +++  LI + +  A +F L+GA F A + +V+Y
Sbjct: 1   MLATLFYIAALIALTSTMAALTRANAAHALIYLIVSLLAVAVMFFLMGAPFAAALEVVIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IMML++     +  ++     ++F+    A L++     ++   +G  S
Sbjct: 61  AGAIMVLFVFVIMMLNLGDTGEDREREWLAGRNWFVPGAMAALLLIEMLMVLGDFQGVTS 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                    + +G  L+  Y   +EI+  +LL S++GA  L  R
Sbjct: 121 GNAVSP---KAVGIRLFGPYLLAVEIASMLLLSSLVGAYHLGRR 161


>gi|319901161|ref|YP_004160889.1| NADH dehydrogenase subunit J [Bacteroides helcogenes P 36-108]
 gi|319416192|gb|ADV43303.1| NADH dehydrogenase subunit J [Bacteroides helcogenes P 36-108]
          Length = 170

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++++ FY  +    + S L VT    + S   L+F     AG++ LLG  F+  + ++
Sbjct: 3   ITLETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQVM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   + +VA   K+  FL         A +++  +    F A  +
Sbjct: 63  VYAGGIVVLYVFSILLTSGEGDVAAKLKRSKFLAGLGATAGGAVIVLFITLNHKFIATTD 122

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
           +  L     N+  IG  + +     Y  P E    +LL  ++G I++  + 
Sbjct: 123 VQPLEV---NIRTIGHHMLSGEKYGYLLPFEAVSILLLACIVGGILIARKR 170


>gi|220904924|ref|YP_002480236.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869223|gb|ACL49558.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 214

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 1/144 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            +FF   + + ++   L + +RNP++ V  ++  FV+ A ++L L AEF+A + +VVY G
Sbjct: 4   EIFFLYCAVVIVVCGILSIRLRNPVHCVLLVLLLFVHMAAVYLTLQAEFLAAVQIVVYAG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSR 123
           AV+V +LF++ ++++  E+  P         + IGI L   L+     FM    +     
Sbjct: 64  AVLVMYLFVVFLVNLKREMRMPALVPHPWVGYAIGIALCGTLLWGLRFFMAGGKDVWPYE 123

Query: 124 LVFKGNNVENIGKVLYTQYAYPLE 147
            + +  +   + + L+T     LE
Sbjct: 124 ALREATHTRALSRELFTHNFLALE 147


>gi|254282451|ref|ZP_04957419.1| NADH dehydrogenase i chain j [gamma proteobacterium NOR51-B]
 gi|219678654|gb|EED35003.1| NADH dehydrogenase i chain j [gamma proteobacterium NOR51-B]
          Length = 169

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L FYL + +A+ ++ + +T  N  +++  LI + +  A +F +LGA F A + +++Y
Sbjct: 1   MTVLLFYLTAALAVFATVVALTRANAAHALIYLILSLLAVAVMFFMLGAPFAAALEVLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IMML++     E  +       + +  L   +++     +   +    S
Sbjct: 61  AGAIMVLFVFVIMMLNLGDAGEEQERGWLDARLWIVPGLLTTVLLVEMLLVFGESGVTTS 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                    + +G  LY  Y   +E++  +L+ +++GA  +  R
Sbjct: 121 GHSVSP---KEVGISLYGPYVLAVELASMLLMAALVGAYHVARR 161


>gi|153007184|ref|YP_001381509.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030757|gb|ABS28525.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. Fw109-5]
          Length = 170

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 87/153 (56%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             + + F++F+   ++++  VV  RNP+Y+  +L+ AF   AG+++LL A  +A++ ++V
Sbjct: 4   TAELVIFWIFAIPLLLTAMGVVVARNPVYAAMNLVAAFFFMAGIYVLLAAHLIALMQILV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV+V FLF+IM+L    E  E  ++R       IG ++   ++ A+   V  +    
Sbjct: 64  YAGAVMVLFLFVIMLLSTGEEHRERERRRVMQYVGAIGAVSLFAVLVAAIARVPDSAMGA 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
                +   V+ +G+VLYT+Y  P E++  +LL
Sbjct: 124 LAQPDRFGTVKAVGQVLYTEYLLPFEVTSLLLL 156


>gi|197131418|gb|ACH47227.1| NADH-plastoquinone oxidoreductase subunit 6 [Sarcocaulon
           vanderietiae]
          Length = 176

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78
            NPI+S FSL F F+  +  ++L    FVA   L++YVGA+ V  LF +M ++       
Sbjct: 30  TNPIFSAFSLGFVFICISLFYILANCHFVAASQLLIYVGAINVLILFAVMFMNGSEYSKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
           +++             + F+ I++  L       +  +   ++       +N + IG  L
Sbjct: 90  LNLGTVGDGTTSLVCTTLFLSIISNILDTSWYGIIWTTRANQIIEKDL-ISNSQQIGIRL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E+   ILL+++IGAI +  +
Sbjct: 149 STDFFLPFELISIILLVALIGAIAVARQ 176


>gi|262373367|ref|ZP_06066646.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter junii
           SH205]
 gi|262313392|gb|EEY94477.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter junii
           SH205]
          Length = 173

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F A + ++VY GA++
Sbjct: 5   FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAAALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-F 126
           V F+F++MML++  E  E   K     ++    + + ++     +M+      +S  +  
Sbjct: 65  VLFVFVVMMLNLGQETVEQESKWLTSDAWAYPAMLSFILGLTLVWMLNGEYTTISAPMGL 124

Query: 127 KGNNVENIGKVLYTQYAYPLE 147
           +    + +G+ L+T Y   +E
Sbjct: 125 EIVGPKAVGQALFTHYLLLVE 145


>gi|27464553|gb|AAO16128.1| NADH dehydrogenase subunit 6 [Alcyonium coralloides]
 gi|27464556|gb|AAO16130.1| NADH dehydrogenase subunit 6 [Alcyonium glomeratum]
 gi|27464559|gb|AAO16132.1| NADH dehydrogenase subunit 6 [Alcyonium glomeratum]
          Length = 147

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+E IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLML----------RHRRDIKRQDISKQLESN 183
           +L                   RQD+  Q+   
Sbjct: 114 LLAKQPNSPFLYNSHSESLRSRQDLFLQISRE 145


>gi|91208953|ref|YP_538987.1| NADH dehydrogenase subunit 6 [Gossypium hirsutum]
 gi|122201415|sp|Q2L958|NU6C_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|85687467|gb|ABC73679.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium hirsutum]
          Length = 176

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  LF +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  +G+    ++   ++V     ++ ++   +               +N + IG  
Sbjct: 90  FNL--WTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E    ILL+++IGAI +  +
Sbjct: 148 LATDFFLPFEFISIILLVALIGAIAVARQ 176


>gi|51892733|ref|YP_075424.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM
           14863]
 gi|51856422|dbj|BAD40580.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM
           14863]
          Length = 168

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +   MA+     V+  + P+Y V S +FAF+  A L+L L +EF+A+I L+VY GA+
Sbjct: 4   LFIIAGLMAVAGVLGVILAKPPVYQVMSTVFAFLGLAALYLSLQSEFLAVIQLIVYGGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE--LSRL 124
           ++ FLF+I +L    +  E    +          +   L+V  +   +F  EG    +++
Sbjct: 64  MILFLFVITLLTARRDPVEKDAGQLTRPKLIGYAVGGALLVMLAIVGLFGGEGRIGWTQV 123

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                 V+  G  L T   +P EI  FIL++++IG ++L+ RHR
Sbjct: 124 PADFGQVKAFGYELLTTNVFPFEILAFILMVAVIGVMLLVGRHR 167


>gi|317121162|ref|YP_004101165.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermaerobacter marianensis DSM 12885]
 gi|315591142|gb|ADU50438.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermaerobacter marianensis DSM 12885]
          Length = 222

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ F + + + ++ ++ VVT     +S   L   FV  AGLF+LL A   A++ ++
Sbjct: 1   MTGAAVIFAILAAVVLLGAWRVVTSEQIAHSALFLGLTFVGMAGLFVLLQAPTFALLHVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCASNFMV 114
           VYVGA++   +F IM+ D +            R +R  L  ++  I      V  +  + 
Sbjct: 61  VYVGAILTVVVFAIMLSDPEELRGAGDLPPGERLRRRLLSPYYGWIPVVVAGVLVAVVLA 120

Query: 115 FSAEGELSRLVFK---GNNVENIGKVLYTQYAYPLEI 148
             A  +L R+       +++  IG+ ++T+YA P E+
Sbjct: 121 SLAAAQLPRVPLGEPVADDLRAIGRDMFTRYALPFEV 157


>gi|195953126|ref|YP_002121416.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932738|gb|ACG57438.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 165

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 3/160 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L F + S +AI+S+   + V++PI+ +   +   ++ A  F  L A+ +A + LV+Y
Sbjct: 1   MELLVFVVISIIAIVSALGAILVKSPIHVMVWFLGFILSVAASFFALKADLLAGLQLVIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
             A++VF++ +I  +  +        +  +   F   + A    + AS ++V S+     
Sbjct: 61  AVAIVVFYVLVITTIPWE---KVKMFEGFYKKEFVFALPAFLFTIGASIYLVISSRFSNL 117

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
           R     +NV  +G VL+T+Y  P E++ FILL++MIGAI+
Sbjct: 118 RQPLPKDNVSALGTVLFTKYIAPFELASFILLIAMIGAII 157


>gi|149390594|ref|YP_001294238.1| NADH-plastoquinone oxidoreductase subunit 6 [Buxus microphylla]
 gi|221272312|sp|A6MM90|NU6C_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|146762339|gb|ABQ45303.1| NADH-plastoquinone oxidoreductase subunit 6 [Buxus microphylla]
          Length = 176

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 8/152 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD--- 78
           VV + NPI+S FSL       +   +   + FVA   L++YVGA+ V  +F +M  +   
Sbjct: 26  VVLLTNPIFSAFSLGLVLFCISLFHIPSNSHFVAAAQLLIYVGAINVLIIFAVMFTNGSE 85

Query: 79  ----IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
                 +             S F+ ++   L       +  +   ++       +N + I
Sbjct: 86  YYNDFHVWTVGDGVTSLVCTSIFVSLITTILDTSWYGIIWTTRSNQIIEQDL-ISNGQQI 144

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           G  L T +  P E+   ILL+++IGAI +  +
Sbjct: 145 GIHLSTDFFLPFELVSIILLVALIGAIAMARQ 176


>gi|260171807|ref|ZP_05758219.1| NADH dehydrogenase I, chain J [Bacteroides sp. D2]
 gi|315920119|ref|ZP_07916359.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693994|gb|EFS30829.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 170

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            ++++ FY  +   I  S + VT +  + S   L+F     AG++ LLG  F+  + ++V
Sbjct: 4   TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V ++F I++   + + AE  K+   L      I    +I+  +    F    + 
Sbjct: 64  YAGGIVVLYVFSILLTSGEGDRAEKVKRSKLLAGLITMIAGLAIILTITLKHNFM---QT 120

Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLS 156
           + L  +  ++  IG  L +     Y  P E    +LL  
Sbjct: 121 ANLAPQEIDIHAIGNALLSSDKYGYILPFEAVSILLLAC 159


>gi|301165397|emb|CBW24968.1| putative NADH dehydrogenase chain J [Bacteriovorax marinus SJ]
          Length = 174

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F L + + +  ++ VV  RN +++   L+ +    AGL+  LGA+F+A   +VVY G
Sbjct: 4   NIMFILSALLTLAGAYGVVASRNIMHACVYLLASLFGIAGLYATLGADFLAATQMVVYAG 63

Query: 65  AVIVFFLFIIMMLDIDIEV-----AEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AE 118
            V++  LF IM+     E             G + +F IG L+A ++   +  ++    +
Sbjct: 64  GVVILMLFAIMLTGGHKEAMNRFGINKIPSMGTVRTFVIGTLSALVLGSVAFKIIAGMTK 123

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                L      VE +G +L T +    EIS  +LL +++GA V+    ++
Sbjct: 124 HVPGELPEFTTTVEKLGVLLLTDHILAFEISSVLLLGALVGAAVISRPRKQ 174


>gi|298373154|ref|ZP_06983144.1| NADH dehydrogenase I, J subunit [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298276058|gb|EFI17609.1| NADH dehydrogenase I, J subunit [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 172

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           +   +I S + +T ++ + S   L+   +  AG +L L   F+A + + VY G V+V F+
Sbjct: 2   AVAMLIMSVMAITTKSLLRSATYLLLTLICTAGFYLFLNYHFLAAVQVSVYAGGVVVLFV 61

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
           F I +     EV    + R ++    I ++   L+        F      S       ++
Sbjct: 62  FAIFLTTKKDEVLVKHEYRRYVYGALIALVGIGLVAYTILKTKFIYAANPSMEGDAQLSM 121

Query: 132 ENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175
            +IG  L      Q+  P E+   +LL +++G I++  + ++  ++++
Sbjct: 122 ADIGTALMGTGKYQFLLPFEMLSLLLLAAIVGGILIARKDKKHGEKEE 169


>gi|71892258|ref|YP_277992.1| NADH dehydrogenase I chain J [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796364|gb|AAZ41115.1| NADH dehydrogenase I chain J [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 183

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +  FY+    AI+S+  V+   NP+ ++  LI +F++ +  F  LGA F A + ++VY G
Sbjct: 2   TALFYISGITAILSTICVILHYNPMRALLYLIVSFLSISCNFFSLGASFAAALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF--IGILAAELIVCASNFMVFSAEGELS 122
           A+++ F+F IMML+    +   +K+  FL         L   ++     ++ F  + +  
Sbjct: 62  AIMILFVFAIMMLNTKNIIFGIQKESRFLNPILCCGSALLVGILFAVLLYISFVLKDDFI 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            +     + + +G  L+  Y   +E++ F+LL ++I    L
Sbjct: 122 NVNNSIIDSKQVGVALFGPYILTVELASFLLLGALISVFHL 162


>gi|317153006|ref|YP_004121054.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316943257|gb|ADU62308.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 169

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 3/167 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V+  + F +++ + I  S   V+  + + ++  LI   V  AG++LLL + F+A + L++
Sbjct: 3   VLAKVAFGIYTAVIIGGSVFAVSSTSLVRALVGLITTLVGVAGMYLLLASPFMAFMQLLI 62

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V   F +M+     E          + ++  G+ A         ++V +   + 
Sbjct: 63  YVGAVSVLIFFAVMLT--RAESGGDESAPAPMKTYVFGLAATIAPAAVLGWLVMTRPVQ- 119

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           S  +    +++ +G+ L   Y  P E+   IL+++M GA++L    R
Sbjct: 120 SIAIPTEVDIKQLGEGLLGTYFLPFELISVILMVAMAGAVLLTWEKR 166


>gi|256390060|ref|YP_003111624.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora
           acidiphila DSM 44928]
 gi|256356286|gb|ACU69783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora
           acidiphila DSM 44928]
          Length = 195

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 1/162 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   +   ++ L VTVRN +++   L+ A    AG +LLL AEFVA + +++YVG
Sbjct: 14  EITFVLVGLLTFGAAVLTVTVRNLVHAALWLVVALGGLAGCYLLLAAEFVAWVQVLIYVG 73

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV V  LF +M+    I             +  +G+  A ++V      V +   +  R 
Sbjct: 74  AVAVLLLFGLMLTRAPIGRTTELDSGNRWAAAVVGLATAGVLVTVIGDAVRTTWFDPRRN 133

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           V  G   + +G  L+  +  P E+   +LL +++GAIVL  R
Sbjct: 134 VVNGT-AKAVGSSLFRYWVLPFELLSVLLLAALVGAIVLSRR 174


>gi|11467927|ref|NP_057988.1| NADH dehydrogenase subunit 6 [Scenedesmus obliquus]
 gi|8099192|gb|AAF72047.1|AF204057_2 NADH dehydrogenase subunit 6 [Scenedesmus obliquus]
 gi|7711049|emb|CAB90373.1| NADH dehydrogenase subunit 6 [Scenedesmus obliquus]
          Length = 219

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 28/216 (12%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L +  A++S FL++  +NP++SVF L+  F++ +GL +LLG E+  ++ L+VYVGA+ 
Sbjct: 5   FALIATGALMSVFLMMRSKNPVHSVFYLVLLFLHCSGLLVLLGLEYFVLLQLLVYVGALA 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           + FLF++M+LDI        ++  +  +  +G+      + A    +  +  + S +   
Sbjct: 65  ILFLFVVMLLDIPSTEILRHQRGTYPVAGVLGLCLILSALLAFTQPLVESPFQTSPIPTT 124

Query: 128 GN--------------------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                                        V N+G  LY  +A  L I   +LL++M+GA+
Sbjct: 125 STFTGQNSDFVSSSRHYSFWNNYRTATSTVANLGIRLYGVHADLLIIRSLLLLVAMVGAV 184

Query: 162 VLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
            L L+    +  QD+ +Q   +   S  +V++   K
Sbjct: 185 GLTLKRPVSVPNQDVFRQHYVDFQKS--LVQIPQNK 218


>gi|329944211|ref|ZP_08292470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328530941|gb|EGF57797.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 331

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 80/171 (46%), Gaps = 4/171 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F + + + +     V+T +  + +  ++I   ++ A L+++  + F+ +  +VVY 
Sbjct: 30  EAIVFGVVALVTVACGIGVLTAKRAVTAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 89

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+   LF+IM++ +  +  EP    G +    + IL    +      +V+ A      
Sbjct: 90  GAVMTLVLFVIMLVGVGGD--EPVGAAGSVMRRPVLILLGLGLAGFLAAVVWRAALPTPA 147

Query: 124 LVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +  G       +   LY  +   +E++  +L+++ +GA+ L  R R   +
Sbjct: 148 GLKDGAKAAPDLLAVTLYNDHVVTMELTAILLIVAAVGALTLTHRQRIRAR 198


>gi|114107099|ref|YP_740255.1| NADH-plastoquinone oxidoreductase subunit 6 [Liriodendron
           tulipifera]
 gi|122221283|sp|Q0G9G6|NU6C_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|113201047|gb|ABI32562.1| NADH-plastoquinone oxidoreductase subunit 6 [Liriodendron
           tulipifera]
          Length = 176

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +   +   + FVA   L++YVGAV V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMNGSEYSKD 89

Query: 86  PRKK---RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK---GNNVENIGKVLY 139
                   G        IL + +   +            S  + +    +NV+ IG  L 
Sbjct: 90  LYLWTVGDGVTSLVCTSILFSLITTISDTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFYLPFELISIILLVALIGAISMARQ 176


>gi|197116571|ref|YP_002136998.1| NADH dehydrogenase I subunit J [Geobacter bemidjiensis Bem]
 gi|197085931|gb|ACH37202.1| NADH dehydrogenase I, J subunit [Geobacter bemidjiensis Bem]
          Length = 160

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 5/165 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+ + + +I +   +T R  + ++  L+ +F   A +F LLGA FVA + +++Y
Sbjct: 1   MERTIFYILAAVTVIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPFVAALEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IMM+    EVA P K      S +   L   L+V AS  ++ + +    
Sbjct: 61  AGAIMVLFLFVIMMV----EVASPEKLAKPAFSDWWPALVLVLVVVASLTVLVTGQAPPV 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                   V    +VL+T+Y   +E+    LL +++GA+ L  R 
Sbjct: 117 PGAGAQT-VRQFSQVLFTRYGVAIELVSMQLLFALVGALYLGRRR 160


>gi|262376769|ref|ZP_06069997.1| NADH dehydrogenase subunit I J [Acinetobacter lwoffii SH145]
 gi|262308479|gb|EEY89614.1| NADH dehydrogenase subunit I J [Acinetobacter lwoffii SH145]
          Length = 173

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI+S+  VVT  NP++++ SLI + +  AG+FL++GA F   + ++VY GA++
Sbjct: 5   FYLMALVAIVSTVRVVTNANPVHALLSLIVSLLAVAGMFLIVGAPFAGALEVIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F++MML++  +  E  +K     ++    L + LI     +++ S   + S ++  
Sbjct: 65  VLFVFVVMMLNLGEQTVEQERKWLTSSAWAYPALMSFLIGLVLVWVLNSDYTQASLVMGT 124

Query: 128 G-NNVENIGKVLYTQYAYPLE 147
                + +G+ L+TQY   +E
Sbjct: 125 EMVGPKAVGQALFTQYLLLVE 145


>gi|122202878|sp|Q2QD38|NU6C_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|74027151|gb|AAZ94701.1| NADH dehydrogenase subunit 6 [Cucumis sativus]
 gi|115432853|gb|ABI97466.1| NADH-plastoquinone oxidoreductase subunit 6 [Cucumis sativus]
 gi|115498355|gb|ABI98797.1| NADH-plastoquinone oxidoreductase subunit 6 [Cucumis sativus]
          Length = 176

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +      L     I+ S  V+   N IYS FSL    V+ +  ++L  A+FVA   L++Y
Sbjct: 7   IHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M +               +G+    ++   + V     +V ++   + 
Sbjct: 67  VGAINVLIIFAVMFM--KGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         +N + IG  L T +  P E+   ILL ++IGAI +  +
Sbjct: 125 WTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176


>gi|194132141|gb|ACF33395.1| NADH-plastoquinone oxidoreductase subunit 6 [Gonystylus bancanus]
          Length = 176

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCA------SNFMVFSAEGELSRLVFKG--NNVENIGKV 137
                  +G     ++   ++V         ++         ++++ +   +N + IG  
Sbjct: 90  LNL--WIVGDGVTSLVCTSILVSLITTIFDMSWYGIIWTTRSNQIIEQDLISNSQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+ +IGAI +  +
Sbjct: 148 LSTDFFLPFELISIILLVGLIGAIAVARQ 176


>gi|332296564|ref|YP_004438487.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermodesulfobium narugense DSM 14796]
 gi|332179667|gb|AEE15356.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermodesulfobium narugense DSM 14796]
          Length = 171

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 1/168 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  LFF  F+  +I+ S +V+T +N I++V   +  FV+ +G++L L AEF AMI ++
Sbjct: 1   MSVPVLFFSYFALASIVISLIVITRKNYIHAVLWTLLLFVHISGIYLFLNAEFFAMIQMI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V  +F+IM+L++  E          +   F+      ++         +  G+
Sbjct: 61  VYAGAILVMLIFVIMLLNVKHEDHLSDVSSLSIPKAFLVFCVLGVLAIVLQTSYLNTTGK 120

Query: 121 LS-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            S  LV K ++ + +G++ Y++   PL I G +L + MI AIVL  + 
Sbjct: 121 FSIDLVNKVSDAKLLGQIFYSEANLPLIIMGVVLFVPMIAAIVLAGKR 168


>gi|108761433|ref|YP_629344.1| NADH dehydrogenase I subunit J [Myxococcus xanthus DK 1622]
 gi|108465313|gb|ABF90498.1| NADH dehydrogenase I, J subunit [Myxococcus xanthus DK 1622]
          Length = 168

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 78/155 (50%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ + F  F+ + ++S+  V+  R+PI S  +L+  F   AG+++LL A  VA++ ++
Sbjct: 1   MNIELILFGAFALLTLLSAGTVIFARSPINSAMALVSTFFFMAGIYVLLWAHTVAVMQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V FLF+IM+L++       +     +      +    ++      +       
Sbjct: 61  VYAGAIMVLFLFVIMLLNLGESPTRGKPTVARVAGGAATVGLFAVLAIILLKLPAEPATL 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155
            +        +  +G+V++TQ+ +P E    +LL+
Sbjct: 121 STGAQASFGTIATMGQVIFTQWLFPFEAVSLLLLV 155


>gi|28261772|ref|NP_783285.1| NADH dehydrogenase subunit 6 [Atropa belladonna]
 gi|75248022|sp|Q8S8U6|NU6C_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|20068386|emb|CAC88099.1| NADH degydrogenase ND6 subunit [Atropa belladonna]
          Length = 176

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 16/151 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135
             K   L +   GI +   I    + +   ++     +++             +N + IG
Sbjct: 86  YYKDFHLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             L T +  P E+   ILL ++IGAI +  +
Sbjct: 146 IHLSTDFFLPFELISIILLDALIGAIAVARQ 176


>gi|62263478|gb|AAX78164.1| unknown protein [synthetic construct]
          Length = 202

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 93/169 (55%), Gaps = 10/169 (5%)

Query: 32  VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91
           +  +IF F+  A ++++L   ++A++ +VVYVGAV+V FLF++ MLD+ +E       +G
Sbjct: 24  MLEMIFTFIFTAAVWIILQQVYLALLLIVVYVGAVLVMFLFVVFMLDLHVEE------QG 77

Query: 92  FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGKVLYTQ-YAYPLEI 148
            +G FF  + A  +    +  + ++A    +  + +G    ++ IG  +++    Y  E+
Sbjct: 78  RVGRFFYALAAVVVCAIFATVISYAATNVFAGAMMQGGVGGLKIIGLTMFSNANLYVFEL 137

Query: 149 SGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESNPDNSIVMVKVKSG 196
             FILL +M  AI L LR  R+  K  D ++Q++    + + MVK+ S 
Sbjct: 138 VDFILLAAMTAAITLTLRAKRKGNKTVDPAQQVKVRAKDRLTMVKMPSN 186


>gi|78221390|ref|YP_383137.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter
           metallireducens GS-15]
 gi|78192645|gb|ABB30412.1| NADH dehydrogenase subunit J [Geobacter metallireducens GS-15]
          Length = 161

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+S  FY+ + + +  +   +T ++ ++++  L+ +F   A +F LLGA  VA+  +++Y
Sbjct: 1   MESALFYILAVVTVTGTAFAITEKHAVHAIVYLVTSFFALAVIFFLLGAPVVAIFEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IMMLD+      P + R      +   LA   +  AS   +  +     
Sbjct: 61  AGAIMVLFLFVIMMLDL----GHPERARLPGIREWWPALALGAVTLASALALVVSRAPAI 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               K   V+     L+ +Y   +E+    LL +++GA+ L  + 
Sbjct: 117 PAPGKAIGVKEFALALFGKYGVAVEVISMQLLFALVGALYLARKR 161


>gi|206890506|ref|YP_002248944.1| NADH-quinone oxidoreductase chain j [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742444|gb|ACI21501.1| NADH-quinone oxidoreductase chain j [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 171

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 1/170 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F  F    +  S + +T +NP+++V  L+  F++ A ++L L AEF+AM+ ++VY
Sbjct: 1   MIYFIFAYFCLATLGISIMSLTRKNPVHAVLWLLLLFLHVAVIYLFLNAEFLAMVQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGEL 121
            GA++V FLF + +L         R      G   IG+ + A L+   S+     +    
Sbjct: 61  AGAILVMFLFTLFLLGARQLPKHKRYTSILEGRLLIGLSITATLLAVFSSIKAEYSGKYT 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
            + V    N + IG +L+ +Y+  + I G ILL+ MI   VL  R + D 
Sbjct: 121 IKYVHDVGNTKAIGAMLFNEYSLAVLILGVILLIPMIAVSVLAWRRKDDT 170


>gi|139389151|ref|YP_001123868.1| NADH dehydrogenase subunit 6 [Nasturtium officinale]
 gi|221272333|sp|A4QLY8|NU6C_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134287074|dbj|BAF50693.1| NADH dehydrogenase ND6 [Nasturtium officinale]
          Length = 176

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139
                        +    L    S  +  S  G +              +N + IG  L 
Sbjct: 90  SNLWTVGNGITSLVCTTILFSLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176


>gi|326200332|gb|ADZ52371.1| NADH dehydrogenase subunit 6 [Asclepias syriaca]
          Length = 176

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M            I+    VV + N IYS FSL    V  +  ++LL + FVA   L++Y
Sbjct: 7   MHDFLLVFLGSGLILGGLGVVLLPNSIYSAFSLGLVLVCISLFYILLSSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  LF +M +       + R     +G     ++   L +     +  ++   + 
Sbjct: 67  VGAVNVLILFAVMFMSDSEYYKDSRL--WTVGDGVTLVVCTSLFISLITTIPDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         +N + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 125 WTTRSNQVLEQDLISNSQQIGIHLSTDFFLPFELISLILLVALIGAIAVARQ 176


>gi|159161214|ref|YP_001542500.1| NADH-plastoquinone oxidoreductase subunit 6 [Ceratophyllum
           demersum]
 gi|221272315|sp|A8SEF8|NU6C_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|148508497|gb|ABQ81504.1| NADH-plastoquinone oxidoreductase subunit 6 [Ceratophyllum
           demersum]
 gi|227481172|emb|CAP62551.1| NADH dehydrogenase ND6 subunit [Ceratophyllum demersum]
          Length = 176

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 28  PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87
           PIYS FSL   FV  +  ++   + FVA   L++YVGAV V  +F +M ++      +  
Sbjct: 32  PIYSAFSLGLVFVCISLFYIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMNGSEYYKDFH 91

Query: 88  KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--------GNNVENIGKVLY 139
                +G     ++   ++      ++ ++   +               +NV+ +G  L 
Sbjct: 92  L--WTVGDGITSLVCTSILFSLITTILETSWYGIIWTTRSNQIIEQDLTSNVQQMGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E++  ILL+++IGAI +  +
Sbjct: 150 TDFYLPFELTSIILLVALIGAIAMARQ 176


>gi|156743325|ref|YP_001433454.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus
           castenholzii DSM 13941]
 gi|156234653|gb|ABU59436.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus
           castenholzii DSM 13941]
          Length = 170

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 4/164 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F + + +AI+ +  ++   N I+S   L+  FV  + L++LL A F+ +I L+VY
Sbjct: 1   MELIIFLITAAVAIVGAVAMLLSPNAIHSAIFLLINFVAISVLYVLLYAPFLFVIQLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA+IV FLF++M+L  +        +  F     +G+  A +++    ++V       +
Sbjct: 61  AGAIIVLFLFVVMLLGAERAED---TRERFAWQRPLGLTLAAILLGLIGYIVLRGPASGA 117

Query: 123 RLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
            +   +    E I + L+T Y  P EI+ F+LL +++G +VL +
Sbjct: 118 MVADQQFAAPERIAETLFTTYLLPFEITAFLLLAAIVGVVVLHM 161


>gi|291515385|emb|CBK64595.1| NADH dehydrogenase subunit J [Alistipes shahii WAL 8301]
          Length = 169

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 8/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + ++ + F + +    +S+ L VT R  + +   L+F     AG++  L   F+  + L+
Sbjct: 3   ITLELIVFTVLALFIGVSAILAVTTRRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y G + V ++F I++     + AE  K        F+G+ AA   +    ++    +  
Sbjct: 63  IYAGGITVLYVFSILLTSSQGDKAEDLKGYK----LFVGLGAALASLGICLWITLRHDFL 118

Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
            S       +V  IG  L +     Y  P E+   +LL  ++G I++  + 
Sbjct: 119 PSHFEHGELHVRTIGHALMSSGKYGYILPFEVISLLLLACIVGGILIARKR 169


>gi|139390005|ref|YP_001123604.1| NADH dehydrogenase ND6 [Draba nemorosa]
 gi|221272322|sp|A4QL74|NU6C_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286807|dbj|BAF50429.1| NADH dehydrogenase ND6 [Draba nemorosa]
          Length = 176

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 10/148 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIFSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN--DSEYST 88

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138
                 +G     ++   L+    + ++ ++   +               +N + IG  L
Sbjct: 89  DFTLWTVGDGITSLVCTTLLFSLISTILDTSWYRVIWTTRLNQILEQDLISNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E+   ILL+++IGAI +  +
Sbjct: 149 STDFFLPFELISIILLVALIGAISVARQ 176


>gi|68164857|ref|YP_247653.1| NADH dehydrogenase subunit 6 [Cucumis sativus]
 gi|67511452|emb|CAJ00812.1| NADH dehydrogenase subunit VI [Cucumis sativus]
          Length = 176

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 10/172 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +      L+    I+ S  V+   N IYS FSL    V+ +  ++L  A+FVA   L++Y
Sbjct: 7   IHDFLVVLWGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  +F +M +               +G+    ++   + V     +V ++   + 
Sbjct: 67  VGAINVLIIFAVMFM--KGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                         +N + IG  L T +  P E+   ILL ++IGAI +  +
Sbjct: 125 WTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176


>gi|139388966|ref|YP_001123692.1| NADH dehydrogenase subunit 6 [Lepidium virginicum]
 gi|221272329|sp|A4QLG2|NU6C_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286896|dbj|BAF50517.1| NADH dehydrogenase ND6 [Lepidium virginicum]
          Length = 176

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F     + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLFCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139
                        +    L    S  +  S  G +              +N + IG  L 
Sbjct: 90  FNLWTVGNGITSLVCTTILFSLLSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176


>gi|119368552|ref|YP_913239.1| NADH dehydrogenase ND6 subunit [Gossypium barbadense]
 gi|221272324|sp|A0ZZ88|NU6C_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|119224914|dbj|BAF41300.1| NADH dehydrogenase ND6 subunit [Gossypium barbadense]
          Length = 176

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V  +  ++L    FVA   L++YVGA+ V  LF++M ++      + 
Sbjct: 31  NPIYSAFSLGLVLVCISLFYILTNYHFVATAKLLIYVGAINVLILFVVMFMNSSEYYKDF 90

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138
                 +G+    ++   ++V   + ++ ++   +                N + IG  L
Sbjct: 91  N--PWTIGNGLTSLVCTSILVSLISTILDTSWYGIIWTTRSNQIIEQDLIGNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E    ILL+++IGAI + L+
Sbjct: 149 ATDFFLPFEFISIILLVALIGAIDVTLQ 176


>gi|58578623|ref|YP_203313.1| NADH dehydrogenase subunit 6 [Rhizopus oryzae]
 gi|57339010|gb|AAW49480.1| NADH dehydrogenase subunit 6 [Rhizopus oryzae]
          Length = 214

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 44/213 (20%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++   L  F +++S  LV+T RNP+ SV  LI  F+N A   +LLG  F+ +  L+VY
Sbjct: 1   MNAILLDLLVFGSVLSGILVITSRNPVVSVLFLISVFINVACYLILLGINFIGLAYLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG---FLGSFFIGILAAELIVCASNFMV----- 114
           VGA+ + FLF+IMML+I +   +   +     +  +F +G L    +   +  +      
Sbjct: 61  VGAIAILFLFVIMMLNIKLVELQDSSEDYSNPYPLAFVLGTLFVSGLSLTNKNIWGVHSE 120

Query: 115 ------------------------------------FSAEGELSRLVFKGNNVENIGKVL 138
                                                        +    + + +IG+VL
Sbjct: 121 QSLFGSSNGSGIKLDLSGLFDWVNLLSFKSNTLETLTINHSNWDNVFVSMDQINSIGQVL 180

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
           YT +A  L ++  ILLL+M+G I+L L   + +
Sbjct: 181 YTSHALFLIVASMILLLAMVGPIILCLNPTKRV 213


>gi|194336916|ref|YP_002018710.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309393|gb|ACF44093.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 170

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 5/148 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FYLF+ + + S+  VV  RN IYS FSL+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 7   TVIFYLFAAITLFSAAFVVFTRNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SR 123
            ++V  LF +M  +  + V +  +    +     G L    IV    +  ++  G + S 
Sbjct: 67  GILVLLLFGVMFTNSIMHVGQKSE----VLHIIPGTLLLAAIVGGLLYTFYTTHGWMPSE 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGF 151
            + +G+ VE IG    ++Y  P E+   
Sbjct: 123 TMLQGSIVERIGFETMSRYVLPFEMVSI 150


>gi|290489878|gb|ADD31346.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Oxalis
           latifolia]
          Length = 176

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 16/151 (10%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N IYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++     +  
Sbjct: 31  NTIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----SSE 85

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135
             K   L +   GI     I      +    +     +++             +N + IG
Sbjct: 86  YSKDFNLWTVGNGITLLVCISIFVLLITTIPDISWYGIIWTTRSNQIIEQNWIDNSQQIG 145

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             L T +  P E+   ILL+++IGAI +  +
Sbjct: 146 IHLLTDFFLPFELISIILLVALIGAIAVARQ 176


>gi|139388149|ref|YP_001123340.1| NADH dehydrogenase ND6 [Barbarea verna]
 gi|221272310|sp|A4QKG0|NU6C_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286540|dbj|BAF50165.1| NADH dehydrogenase ND6 [Barbarea verna]
          Length = 176

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139
                        +    L    S  +  S  G +              +N + IG  L 
Sbjct: 90  LNLWTVGNGITSLVCTTILFSLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAISMARQ 176


>gi|50083957|ref|YP_045467.1| NADH dehydrogenase I chain J [Acinetobacter sp. ADP1]
 gi|49529933|emb|CAG67645.1| NADH dehydrogenase I chain J [Acinetobacter sp. ADP1]
          Length = 173

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AIIS+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5   FYLMALVAIISTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF- 126
           V F+F++MML++     E  +K     ++ +  L + L+     +M+         ++  
Sbjct: 65  VLFVFVVMMLNLGRHTVEQERKWLTSETWAVPALMSFLLGLTLVWMLSGEYTTAGHVLGR 124

Query: 127 KGNNVENIGKVLYTQYAYPLEI 148
           +    + +G+ L+T Y   +EI
Sbjct: 125 EVIGPKAVGQALFTHYLLLVEI 146


>gi|290489876|gb|ADD31345.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Liquidambar
           styraciflua]
          Length = 176

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78
            NPI+S FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIFSAFSLGLVLVCISLFYISSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSGYYKD 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
           +++             S F+ ++           +  +   ++       +N + IG  L
Sbjct: 90  LNLWTVGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTRSNQIIEQDL-ISNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E+   ILL+++IGAI +  +
Sbjct: 149 STDFFLPFELISIILLVALIGAIAVARQ 176


>gi|270308200|ref|YP_003330258.1| NADH:quinone oxidoreductase subunit 6 (chain J) [Dehalococcoides
           sp. VS]
 gi|270154092|gb|ACZ61930.1| NADH:quinone oxidoreductase subunit 6 (chain J) [Dehalococcoides
           sp. VS]
          Length = 160

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F++ +   I S+ LVV V+N  +S   LI  F++ AG+FLLL A+F+A + +++Y+G
Sbjct: 2   EIAFWIIAITCIASALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A+ V  +  IM L  +++      K      F + +L   +      +M+ S+    S  
Sbjct: 62  AISVLIILAIM-LTREVQRGNLTNKLKIPALFVVTVLGGVM-----TYMLISSNWTSSDA 115

Query: 125 VFKGNNVENIGKVLYTQ--YAYPLEISGFILLLSMIGAIVLMLRH 167
                    + ++L+    +   + I+G ILL+++IGAIVL+   
Sbjct: 116 PAPSTTTAGLAEMLFGSDGFGLGVLITGVILLVAIIGAIVLVRDK 160


>gi|325104668|ref|YP_004274322.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter
           saltans DSM 12145]
 gi|324973516|gb|ADY52500.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter
           saltans DSM 12145]
          Length = 180

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 12/177 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FYL + +AI+S+  VVT +N + SVF        +AGL++   A+FVA+  +V+Y
Sbjct: 1   MEQILFYLLAGIAILSACYVVTSQNLVRSVFMFFVTLFASAGLYIFALADFVALTQIVIY 60

Query: 63  VGAVIVFFLFIIMMLD------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           VG V+V  LF+ M+        +D    +   +    G+     + A LI         S
Sbjct: 61  VGGVLVMLLFVFMLSSKKSLQGLDGLTKQKLSENRLPGAILSLSVFAILIYTIFQIDFNS 120

Query: 117 AEGELSRLV------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                S +           N+ NIG  L T +  P E+   +L++ +IGA  L  + 
Sbjct: 121 LSWIQSAIATDNVKLPSDENISNIGINLMTGFLLPFELICVLLMMVLIGAAHLARKE 177


>gi|322378674|ref|ZP_08053107.1| NADH dehydrogenase subunit J [Helicobacter suis HS1]
 gi|321148891|gb|EFX43358.1| NADH dehydrogenase subunit J [Helicobacter suis HS1]
          Length = 181

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 10/181 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            + + FY F+   +  + +VV+  N +Y++ +L  + V  +G F LLGAEF+ ++ ++VY
Sbjct: 2   FEVIAFYFFAIFTLSMALIVVSTSNILYAMSALAASMVFISGFFFLLGAEFLGVVQILVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119
           VGAVIV + F +M  +   EV E   K   +  + +G + A L+V        +      
Sbjct: 62  VGAVIVMYAFGMMFFNASEEVIERSHKPWLV--YILGGVFALLLVVILGAPALNNYAHHL 119

Query: 120 -----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
                ++        NV  +G  ++T+Y    E  G +LL ++IG I   LR     +++
Sbjct: 120 SAENLQIVTPNLSTTNVHLMGYFVFTKYRIAFEAGGVMLLSALIGGITTALRKSYLSQKE 179

Query: 175 D 175
           +
Sbjct: 180 N 180


>gi|320107668|ref|YP_004183258.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Terriglobus
           saanensis SP1PR4]
 gi|319926189|gb|ADV83264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Terriglobus
           saanensis SP1PR4]
          Length = 168

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ + F +F+ + +  +  ++  R+PI S  SL+   ++ A ++  LGAEF+A   ++VY
Sbjct: 1   MQLVLFLIFAVLCVAGALNLLFQRHPINSALSLVVVMMSLAVIYWTLGAEFLAAAQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF--IGILAAELIVCASNFMVFSAEGE 120
            GAV+V F+F++M+L+   E      +  ++        ILA    +             
Sbjct: 61  AGAVMVLFVFVVMLLNAGEEERTTGSRAAYIAGIPGVAAILALLTYIFMHERAALGYATL 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              L    +N+  I +VL+T+   P E++  ++L++++GA+VL  + 
Sbjct: 121 GGSLNHTTSNITEISRVLFTELLLPFEVTSILILVAILGAVVLARKE 167


>gi|301058577|ref|ZP_07199582.1| putative NADH-quinone oxidoreductase subunit J [delta
           proteobacterium NaphS2]
 gi|300447309|gb|EFK11069.1| putative NADH-quinone oxidoreductase subunit J [delta
           proteobacterium NaphS2]
          Length = 166

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L FY+   +A++++FL +T R  I+ +  L+ + + AA  FL+LGA F A + ++ Y G
Sbjct: 2   NLAFYVSGVIAVLATFLAITRREAIHGLVYLVVSLLAAAVAFLVLGAPFAAALEVITYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V  LF +M L       +  K+      +F        ++   +F+     G+ S +
Sbjct: 62  AMMVMLLFAVMTLSPKARKEDDAKR---PHPWFWLGPLLLSVLLTGDFIYVLFAGKGSPV 118

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                +   +G+VL+  Y   +E++  +LL  ++GA  L  
Sbjct: 119 SGSAVSPRQVGQVLFGPYVLGVELASMLLLAGLVGAYHLGR 159


>gi|309322124|ref|YP_003933940.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum]
 gi|197131408|gb|ACH47222.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum]
 gi|300069217|gb|ADJ66339.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum]
          Length = 176

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            N IYS F+L   F+  +  ++L  + FVA   L++YVGA+ +  LF +M L+     + 
Sbjct: 30  TNLIYSAFALGLVFICISLFYILANSHFVAAAQLLIYVGAINILILFAVMFLN--GSESS 87

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
              + G +G     ++   L +   + ++ ++   +               +N + IG  
Sbjct: 88  KDSRFGTVGDGATSLVCTTLFLSLISNILDTSWYRIIWTTRATQIIEKDLISNSQQIGIR 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAI 161
           L T +  P E+   ILL+++IGAI
Sbjct: 148 LSTDFFLPFELISIILLVALIGAI 171


>gi|139389857|ref|YP_001123517.1| NADH dehydrogenase subunit 6 [Crucihimalaya wallichii]
 gi|221272318|sp|A4QKY7|NU6C_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286719|dbj|BAF50342.1| NADH dehydrogenase ND6 [Crucihimalaya wallichii]
          Length = 176

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139
                        +    L +  S  +  S  G +              +N + IG  L 
Sbjct: 90  FNLWTVGNGITSLVCTTILCLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176


>gi|72163085|ref|YP_290742.1| NADH dehydrogenase subunit J [Thermobifida fusca YX]
 gi|71916817|gb|AAZ56719.1| NADH dehydrogenase I chain J [Thermobifida fusca YX]
          Length = 286

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 4/183 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           ++  FY+   + ++++  VV  R  +YS   +    +  A  + +  A F+ ++ +VVY 
Sbjct: 17  ETATFYILGSIVVLAALGVVFSRRAVYSALMMAVVMIGLAVFYGINEAPFLMVVQIVVYT 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           GAV++ FLF++M++ +    +     RG   L +         L+   S+ +     G  
Sbjct: 77  GAVLMLFLFVLMLVGVSSSDSLVETIRGHRLLTAVIALCFLVPLVSGLSSIVAGEPVGLS 136

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181
           + +   G ++  +   +  +Y    E +G +L+ +++GA+VL    R   KR    KQ+ 
Sbjct: 137 AGVAAAGGSIPWLASEIIYRYVIAFEATGALLITAVLGALVLAHAVRTKKKR--TQKQMS 194

Query: 182 SNP 184
            + 
Sbjct: 195 MDR 197


>gi|290489870|gb|ADD31342.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ficus sp.
           Moore 315]
          Length = 176

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYS FSL    V+ + L++L  + FVA   L++YVGA+ V  +F +M ++      + 
Sbjct: 31  NPIYSAFSLGLVLVSISLLYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90

Query: 87  RKK------RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT 140
                       + +   G+L   +   +   ++++            +N + IG  L T
Sbjct: 91  NLWTVGNGFTLLICTSIFGLLITTITDISWYGIIWTTRLNQIIEHDLISNSQQIGIHLST 150

Query: 141 QYAYPLEISGFILLLSMIGAIVLMLR 166
            +  P E    ILL ++IGAI +  +
Sbjct: 151 DFFLPFEFISIILLAALIGAITVARQ 176


>gi|226944926|ref|YP_002799999.1| NADH dehydrogenase subunit J [Azotobacter vinelandii DJ]
 gi|226719853|gb|ACO79024.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain J [Azotobacter
           vinelandii DJ]
          Length = 166

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FYL +  A+ S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++VY G
Sbjct: 2   EFAFYLSAGFAVASTLRVITHTNPVHALLYLIVSLLAVAMCFFSLGAPFAGVLEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   VAE   ++      + G     +++      V     + + +
Sbjct: 62  AIMVLFVFVVMMLNLGPAVAEQE-RQWLKPGIWAGPTLLSVLLLVQLLYVLFGTSDGALV 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
             +  + + +G  LY  Y   +E
Sbjct: 121 GQQTVDAKAVGTALYGPYLLAVE 143


>gi|326799009|ref|YP_004316828.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sphingobacterium sp. 21]
 gi|326549773|gb|ADZ78158.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sphingobacterium sp. 21]
          Length = 165

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  +F++I  S +V+  +NP++SV  L+  F      ++LL A+F+A++  +VY+GA+
Sbjct: 3   LFYFVAFLSIFFSLMVIITKNPVHSVLYLVITFFTFTVHYILLNAQFLAVVNFIVYMGAI 62

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V FLF++M+L+++ +    +     +     G+    L+  A +         L     
Sbjct: 63  MVLFLFVLMLLNLNKDTEPMKSVLVKVMGAVAGM--CLLVTVAGSIRAIEVSDPLILKSP 120

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
               V N+GKVL+ ++  P EIS  +LL +M+GA++L  + ++ I
Sbjct: 121 DIGLVGNLGKVLFNEFLLPFEISSLLLLTAMVGAVLLAKKEQKSI 165


>gi|7525088|ref|NP_051112.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
 gi|2499298|sp|Q95695|NU6C_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|1619279|emb|CAA67670.1| ndhG [Arabidopsis thaliana]
 gi|5881749|dbj|BAA84440.1| NADH dehydrogenase ND6 [Arabidopsis thaliana]
          Length = 176

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139
                        +    L +  S  +  S  G +              +N + IG  L 
Sbjct: 90  FNLWTIGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176


>gi|326910750|gb|AEA11193.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii]
 gi|327176857|gb|AEA29865.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii]
          Length = 177

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVT--VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT 58
           M   ++ F + S +A++S  LVV     NP+ +VF  +  FV  +GL + L  +F AMI 
Sbjct: 1   MNNSTILFGVLSSLALVSGGLVVRSGALNPVPAVFLFLLVFVLCSGLLVWLDLDFFAMIF 60

Query: 59  LVVYVGAVIVFFLFIIMMLDIDIEVAE----PRKKRGFLGSFFIGILAAEL-IVCASNFM 113
           LVVY GA++VFFLF++MM     E  E    PR     +G  F+  L   L         
Sbjct: 61  LVVYAGAMVVFFLFVVMMCTFRREGREHEVAPRHTEFVVGLLFLSHLWLVLERSPRPPTP 120

Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                GE    V    +++ +G +LYT        SG ILL++++GAIVL + 
Sbjct: 121 SAYPIGEHCGHVTSATHLDTLGTLLYTHVPLLFIGSGLILLVALLGAIVLTVH 173


>gi|307822809|ref|ZP_07653040.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacter
           tundripaludum SV96]
 gi|307736413|gb|EFO07259.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacter
           tundripaludum SV96]
          Length = 172

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FY+ S +A+ ++ +++T  N ++ +  LI + +    LF LLGA F A++ +++Y
Sbjct: 1   MALTLFYITSAVAVFATVMMITRLNAVHGLLYLILSLLAVGVLFFLLGAYFAAVLEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IMML+   +  E  +     G +    L A ++      +V S     +
Sbjct: 61  AGAIMVLFVFVIMMLNQGQKTLEQERAWLQPGIWIGPSLLALILFVEMLVIVVSGGSAET 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                    + +G  LY  Y   +E++  +LL  ++GA  L
Sbjct: 121 GYAVSA---KQVGVALYGPYLLAVELASMLLLAGLVGAYHL 158


>gi|290489886|gb|ADD31350.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Trochodendron
           aralioides]
          Length = 176

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +   +   + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYND 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  +G     ++   + V     +  ++   +               +N + IG  
Sbjct: 90  FHL--WTVGDGVTSLVCTSIFVSLITTIPDTSWYGIIWTARSNQIIEQDLISNSQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+++IGAI +  +
Sbjct: 148 LSTDFFLPFELISIILLVALIGAIAMARQ 176


>gi|323698258|ref|ZP_08110170.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           sp. ND132]
 gi|323458190|gb|EGB14055.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           desulfuricans ND132]
          Length = 174

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 3/167 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V+  + F +++ + +  + L V+  + + ++  LI   +  AG++LLL   F+A + L++
Sbjct: 3   VLAKIAFGVYTLVILGGAVLAVSSSSLVRALIGLITTLIGVAGMYLLLATPFMAFMQLLI 62

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V   F +M+     E       +  +  +  G+ A         ++V +     
Sbjct: 63  YVGAVSVLIFFAVMLT--RAEQGGDEADKAPMKRYVFGLAATMAPAAILGWLVLTRPAPS 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             +  +   ++ +G+ L   Y  P E+   IL+++M GA++L+   R
Sbjct: 121 VAVPVEVP-IKQLGEGLLGSYFLPFELISVILMVAMSGAVLLVWEKR 166


>gi|86149418|ref|ZP_01067649.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85840200|gb|EAQ57458.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 172

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++L F  FS + +    + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV+  + F +M  D   E  E  K K+ F     +  +    ++    +   S +  L
Sbjct: 62  SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSTILLLAMLIGFKYQNISTDLPL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +       N + +   ++++Y    E    +LL++++ AIVL  +     K
Sbjct: 122 NDPTLFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTHKELTKEK 171


>gi|283795060|ref|YP_003359476.1| NADH dehydrogenase subunit 6 [Synedra acus]
 gi|261279716|gb|ACX62024.1| NADH dehydrogenase subunit 6 [Synedra acus]
          Length = 198

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 15/178 (8%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF+LFSF+  +SS  V+++RN I SV SLI  F+ ++ L L+L  EF A + L+VYVGA+
Sbjct: 6   FFHLFSFLLTLSSISVISLRNSIQSVVSLIVCFITSSILLLILNCEFFAFLFLIVYVGAI 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAEGELSR 123
            V FLF++MML++     +      FLG        +L    I        +S   + S 
Sbjct: 66  AVLFLFVLMMLELKHLDNKANLFHIFLGLSVPVIFFLLTLPFIDSCFALNPYSEVFQQSN 125

Query: 124 LVF------------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            +F               ++E +G++LYT+YA    ++G IL L+++   VL +  ++
Sbjct: 126 RIFIENCFDEFYIEDDTTDIEVLGQLLYTRYALQFLLTGLILTLAVVCVGVLTIDRKK 183


>gi|139387308|ref|YP_001123428.1| NADH dehydrogenase subunit 6 [Capsella bursa-pastoris]
 gi|221272313|sp|A4QKP8|NU6C_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286629|dbj|BAF50253.1| NADH dehydrogenase ND6 [Capsella bursa-pastoris]
          Length = 176

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139
                        +    L +  S  +  S  G +              +N + IG  L 
Sbjct: 90  FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176


>gi|290489868|gb|ADD31341.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Euonymus
           americanus]
          Length = 176

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    +  A  ++L  + FVA   L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLICIALFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN--GSEYH 87

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                   G     ++   + +     +  ++   +                N + IG  
Sbjct: 88  NAFYLWNAGGGVTSLVCTSIFLLLITTIPDTSWYGIIWTTRSNQIIEKDLITNSQQIGIR 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+++IGAI    +
Sbjct: 148 LSTDFFLPFELISIILLVALIGAIAAARQ 176


>gi|183220693|ref|YP_001838689.1| NADH-quinone oxidoreductase subunit J [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910794|ref|YP_001962349.1| NADH dehydrogenase subunit J [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775470|gb|ABZ93771.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779115|gb|ABZ97413.1| NADH-quinone oxidoreductase, chain J [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 199

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 20/187 (10%)

Query: 1   MVMQS----LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAM 56
           M +++    L F  F  + ++++  VV  +NP+ S  SL+F F   AG++ ++GA F+A 
Sbjct: 1   MNLETSPSLLLFVFFGTVTVVTALSVVFQKNPVVSAVSLVFTFFALAGIYGIMGALFIAT 60

Query: 57  ITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-- 114
           + ++VY GA++V  +F++M+L    E     +K           +     +  S      
Sbjct: 61  MQVLVYAGAIMVLVVFVLMLLSQRAETLSRYRKHPIRLVLLSVFVLGFFFLLYSALTTGV 120

Query: 115 --------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
                         ++   + +  V    NV  +G   Y  Y  P E+   +LL++++GA
Sbjct: 121 PHSEQMGKGYENAEYNFPIQGTSTVNAKGNVATVGASTYLDYLLPFEMISILLLVAVLGA 180

Query: 161 IVLMLRH 167
           ++L  + 
Sbjct: 181 VILAKKK 187


>gi|39998522|ref|NP_954473.1| NADH dehydrogenase I subunit J [Geobacter sulfurreducens PCA]
 gi|39985469|gb|AAR36823.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens PCA]
 gi|298507466|gb|ADI86189.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens KN400]
          Length = 163

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 4/167 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+ + + +I++ L +T ++ ++++  L+ +F   A +F  LGA  VA+  +++Y
Sbjct: 1   MEQALFYILAAVTVIATVLAITEKHAVHAIVYLVTSFFALAVIFFTLGAPVVAVFEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IMMLD+      P + R      +   LA   +  AS   +  +  + +
Sbjct: 61  AGAIMVLFLFVIMMLDL----GHPERARRPGIRDWWPALALGAVTLASALTLLISRAQAA 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
               +   V+     L+ +Y   +E+    LL +++GA+ L  R  R
Sbjct: 117 SAAGRAIGVKEFALTLFGKYGVAVEVISMQLLFALVGALYLAKRRER 163


>gi|139389472|ref|YP_001123168.1| NADH dehydrogenase subunit 6 [Olimarabidopsis pumila]
 gi|221272339|sp|A4QJY5|NU6C_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286366|dbj|BAF49993.1| NADH dehydrogenase ND6 [Olimarabidopsis pumila]
          Length = 176

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139
                        +    L +  S  +  S  G +              +N + IG  L 
Sbjct: 90  FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176


>gi|121613130|ref|YP_001001210.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006103|ref|ZP_02271861.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|218563159|ref|YP_002344939.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|87249905|gb|EAQ72864.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|112360866|emb|CAL35667.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315927684|gb|EFV07015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 172

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++L F  FS + +    + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV+  + F +M  D   E  E  K K+ F     +  +    ++    +   S +  L
Sbjct: 62  SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSTILLLAMLIGFKYQNISTDLPL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +       N + +   ++++Y    E    +LL++++ AIVL  +     K
Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTHKELTKEK 171


>gi|57238583|ref|YP_179714.1| NADH dehydrogenase subunit J [Campylobacter jejuni RM1221]
 gi|57167387|gb|AAW36166.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni
           RM1221]
 gi|315059020|gb|ADT73349.1| NADH-ubiquinone oxidoreductase chain J [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 172

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++L F  FS + +    + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV+  + F +M  D   E  E  K K+ F     +  +    ++    +   S +  L
Sbjct: 62  SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLTMLIGFKYQNISTDLPL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +       N + +   ++++Y    E    +LL++++ AIVL  +     K
Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTHKELTKEK 171


>gi|32480898|ref|NP_862808.1| NADH dehydrogenase subunit 6 [Calycanthus floridus var. glaucus]
 gi|75233676|sp|Q7YJT1|NU6C_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|32399434|emb|CAD28775.1| NADH dehydrogenase ND6 subunit [Calycanthus floridus var. glaucus]
          Length = 176

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +   +   + FVA   L++YVGAV V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMNGSEYSND 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--------GNNVENIGKV 137
                  +G     ++   ++      +  ++   +               +NV+ IG  
Sbjct: 90  FHL--WTVGDGVTSLVCTSILFSLITTIWNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIR 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL ++IGAI +  +
Sbjct: 148 LATDFYLPFELISIILLAALIGAIAMARQ 176


>gi|73748697|ref|YP_307936.1| proton-translocating NADH-quinone oxidoreductase, J subunit
           [Dehalococcoides sp. CBDB1]
 gi|147669456|ref|YP_001214274.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Dehalococcoides sp. BAV1]
 gi|289432723|ref|YP_003462596.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Dehalococcoides sp. GT]
 gi|73660413|emb|CAI83020.1| proton-translocating NADH-quinone oxidoreductase, J subunit
           [Dehalococcoides sp. CBDB1]
 gi|146270404|gb|ABQ17396.1| NADH dehydrogenase subunit J [Dehalococcoides sp. BAV1]
 gi|288946443|gb|ADC74140.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Dehalococcoides sp. GT]
          Length = 160

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F++ +   I+S+ LVV V+N  +S   LI  F++ AG+FLLL A+F+A + +++Y+G
Sbjct: 2   EIAFWIIAITCIVSALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A+ V  +  IM L  +++      K      F +  L   +      +M+ S+    S  
Sbjct: 62  AISVLIILAIM-LTREVQRGNLTNKLKIPALFVVTALGGIM-----TYMLISSNWTSSDA 115

Query: 125 VFKGNNVENIGKVLYTQ--YAYPLEISGFILLLSMIGAIVLMLRH 167
                    +  +L+    +   + ++G ILL+++IGAIVL+   
Sbjct: 116 PPPSTTTAGLADMLFGADGFGLGVLLTGVILLVAIIGAIVLVRDK 160


>gi|86152311|ref|ZP_01070522.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88596684|ref|ZP_01099921.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|315124981|ref|YP_004066985.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840800|gb|EAQ58051.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88191525|gb|EAQ95497.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|284926765|gb|ADC29117.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315018703|gb|ADT66796.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315930445|gb|EFV09509.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 172

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++L F  FS + +    + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV+  + F +M  D   E  E  K K+ F     +  +    ++    +   S +  L
Sbjct: 62  SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISTDLPL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +       N + +   ++++Y    E    +LL++++ AIVL  +     K
Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTHKELTKEK 171


>gi|114330023|ref|YP_740704.1| NADH-plastoquinone oxidoreductase subunit 6 [Nandina domestica]
 gi|122165914|sp|Q09FQ7|NU6C_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|114054525|gb|ABI49918.1| NADH-plastoquinone oxidoreductase subunit 6 [Nandina domestica]
          Length = 176

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +   +   + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFHIPANSHFVAAAQLLIYVGAINVLIVFAVMFMNGSEYYND 89

Query: 86  PRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV----ENIGKVLY 139
                    + S     +   LI   S+   +              ++    + +G  L 
Sbjct: 90  FHLWTVGDGVTSLVCTSIFVSLITTISDTSWYGIIWTTRSNQIIEQDLINKGQQLGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAIAMARQ 176


>gi|297790824|ref|XP_002863297.1| NADH dehydrogenase ND6 [Arabidopsis lyrata subsp. lyrata]
 gi|297309131|gb|EFH39556.1| NADH dehydrogenase ND6 [Arabidopsis lyrata subsp. lyrata]
          Length = 176

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139
                        +    L +  S  +  S  G +              +N + IG  L 
Sbjct: 90  FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176


>gi|326799614|ref|YP_004317433.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sphingobacterium sp. 21]
 gi|326550378|gb|ADZ78763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Sphingobacterium sp. 21]
          Length = 183

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  L FY+ +F A+ S+ L+V+++N + S+F         AGL++   A+FVA+  ++
Sbjct: 1   MNINLLLFYVLAFTAVGSAILIVSMKNLVRSLFLFFVTLFAVAGLYVFALADFVAVTQVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           VYVG V+V  LF  M+ +  +  ++    K    + S+  G+++  L       +   A 
Sbjct: 61  VYVGGVLVLMLFAFMLSNKVLLNDLQSGFKGVFSIPSWQAGMVSLALFTVLLTVVWQVAT 120

Query: 119 GELSRLV----------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            +   +              N + ++G  L T++  P E+    L+++++GA  L  + +
Sbjct: 121 NQPQWITDAKEKQLLIQHHDNTIHHLGINLMTRFILPFEVVSIFLMMALMGAAHLARKEK 180

Query: 169 R 169
           R
Sbjct: 181 R 181


>gi|153951541|ref|YP_001398852.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938987|gb|ABS43728.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 172

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++L F  FS + +    + V  +N +YS+ +L+   V  +G + LL AEF+ +I ++VY
Sbjct: 2   IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALVGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV+  + F +M  D   E  E  K K+ F     +  +    ++    +   S +  L
Sbjct: 62  SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISTDLPL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +       N + +   ++++Y    E    +LL++++ AI L  +     K
Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAITLTHKELTKEK 171


>gi|157415786|ref|YP_001483042.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386750|gb|ABV53065.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748425|gb|ADN91695.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
           [Campylobacter jejuni subsp. jejuni M1]
 gi|315931250|gb|EFV10220.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 172

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++L F  FS + +    + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV+  + F IM  D   E  E  K K+ F     +  +    ++    +   S +  L
Sbjct: 62  SGAVLGLYSFAIMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISTDLPL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +       N + +   ++++Y    E    +LL++++ AIVL  +     K
Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTRKELTKEK 171


>gi|313903489|ref|ZP_07836880.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466310|gb|EFR61833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Thermaerobacter subterraneus DSM 13965]
          Length = 246

 Score =  100 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ F + + + ++ ++ VVT     +S   L   FV  AGLF+LL A   A++ ++
Sbjct: 1   MSGTAVIFAVLAAVVLLGAWRVVTSEQIAHSALFLGLTFVGMAGLFILLKAPTFALLHVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCASNFMV 114
           VYVGA++   +F IM+ D +            R +R FL  ++  +      V  +  + 
Sbjct: 61  VYVGAILTVVVFAIMLSDPEELRGAGDLALGERLRRRFLSPYYGWLPVVVAGVLVAVILA 120

Query: 115 FSAEGELSRLVFK---GNNVENIGKVLYTQYAYPLEISG 150
             A  +L R+       +++  IG  ++T+YA P E++ 
Sbjct: 121 GLAAAQLPRVPLGEPVADDLRAIGGEMFTRYAIPFEVAS 159


>gi|212640512|ref|YP_002317032.1| NADH dehydrogenase subunit J [Anoxybacillus flavithermus WK1]
 gi|212561992|gb|ACJ35047.1| NADH dehydrogenase subunit J [Anoxybacillus flavithermus WK1]
          Length = 169

 Score =  100 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 87/170 (51%), Gaps = 4/170 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q + F++ S +A+     ++ +   ++ V +L+F FV+ AG+++LL AEFVA + ++
Sbjct: 1   MSGQYIAFFVLSLIALGGGIFMLNLNKVVHMVVALVFTFVSIAGIYVLLSAEFVAAVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA+ +  LF IM+     +            +    +    ++      + F +E  
Sbjct: 61  IYSGAITIIMLFGIMLTRHQDDGQSTGSPLRKALALLGTVAFGAVMYIGIRTLDFGSEA- 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              +     N E IG  +Y++Y  P E++  +LL+++IGA++L  +  ++
Sbjct: 120 ---VGLHDKNTEQIGIAMYSKYVIPFELASVLLLVALIGAVILAKKDDKE 166


>gi|262369341|ref|ZP_06062669.1| NADH dehydrogenase subunit I J [Acinetobacter johnsonii SH046]
 gi|262315409|gb|EEY96448.1| NADH dehydrogenase subunit I J [Acinetobacter johnsonii SH046]
          Length = 173

 Score =  100 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5   FYLMALVAIVSTIRVVTNANPVHALLSLIVSLLAVAGMFMIVGAPFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-F 126
           V F+F++MML++     E  +K     ++    L + L+     +M+ S       ++  
Sbjct: 65  VLFVFVVMMLNLGQHTVEQERKWLTSSAWAYPALMSFLMGLVLVWMLGSDYTVAGPVMGT 124

Query: 127 KGNNVENIGKVLYTQYAYPLE 147
           +    + +G+ L+T Y   +E
Sbjct: 125 EVVGPKAVGQALFTHYLLLVE 145


>gi|222824429|ref|YP_002576003.1| NADH-quinone oxidoreductase, J subunit [Campylobacter lari RM2100]
 gi|222539650|gb|ACM64751.1| NADH-quinone oxidoreductase, J subunit [Campylobacter lari RM2100]
          Length = 168

 Score =  100 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 4/164 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            +++ F L S + +    + V   + +Y++ SL  A V  +G + LL AEF+  I ++VY
Sbjct: 2   FETIAFCLLSVLVLGFFLISVLSTSVLYAISSLAAAMVFLSGFYFLLNAEFIGAIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++  + F +M  D  I+V E  K +      FI  +    I+  S  M ++     +
Sbjct: 62  SGAILGLYSFAMMFFDASIKVKENLKGKR----VFIFAVIFSAILLISIIMGYNFGLNET 117

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             V+  ++ + IG  L+T+Y    E    +LL+++I AI L  +
Sbjct: 118 GEVYGLDSTQQIGFTLFTKYMLAFEFMAILLLIALICAIALTQK 161


>gi|317051062|ref|YP_004112178.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Desulfurispirillum indicum S5]
 gi|316946146|gb|ADU65622.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfurispirillum indicum S5]
          Length = 168

 Score =  100 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 3/167 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           ++ +L F  F+ ++I  +  ++  R+P+    S I   ++ AGL+ LL A+ +    ++V
Sbjct: 3   IVAALLFLAFATLSIAGAAGLILFRHPLNCAVSFIITLISLAGLYALLSAKVLFAFQIIV 62

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA++   LFIIM +++  E       R FL +   G +    I       +F+     
Sbjct: 63  YAGAIMSLILFIIMFINVRDEDLPDESNRIFLMA--GGCVFLVPIAWILLKAIFALPYVS 120

Query: 122 SRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           + +V  G   +   G +L+T +  P E+   +LL++++G +VL  R 
Sbjct: 121 TAIVGDGFGGIHQFGMMLFTDWILPFEVVSALLLVALVGGVVLAKRR 167


>gi|313184044|ref|YP_004021201.1| NADH-plastoquinone oxidoreductase subunit 6 [Castanea mollissima]
 gi|290489882|gb|ADD31348.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Quercus nigra]
 gi|309321571|gb|ADO65111.1| NADH-plastoquinone oxidoreductase subunit 6 [Castanea mollissima]
          Length = 176

 Score =  100 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I+    VV + N IYS FSL    V  +  ++L  +  VA   L++Y
Sbjct: 7   IHDFLLVFLGSGLILGGIGVVLLTNTIYSAFSLGLVLVCISLFYILSNSHLVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK------RGFLGSFFIGILAAELIVCASNFMVFS 116
           VGA+ V  +F +M ++      +             + +    +L A +   +   ++++
Sbjct: 67  VGAINVLIIFAVMFMNGSEYYKDLNLWTVGDGVTLLICTILFCLLMATISDTSWYGIIWT 126

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                       +N + IG  L T +  P E+   ILL ++IGAI +  +
Sbjct: 127 TRSNQIIEQDLISNSQQIGIHLSTDFFLPFELISIILLAALIGAIAVARQ 176


>gi|290489852|gb|ADD31333.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Lonicera
           japonica]
          Length = 176

 Score =  100 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML---- 77
           VV + NPIYS FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M +    
Sbjct: 26  VVLLPNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMKGSE 85

Query: 78  ---DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
              D  +             S F+ ++           +  +   ++       +N + I
Sbjct: 86  YYKDFHLLAVGDGLTAMVCTSLFVSLITTIPDTSWYGILWTTKSSQIIEQDL-ISNSQQI 144

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           G  L T +  P E+   ILL+S+IGAI +  +
Sbjct: 145 GIHLSTDFFLPFELISIILLVSLIGAIAVARQ 176


>gi|148925718|ref|ZP_01809406.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205355585|ref|ZP_03222355.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|145845728|gb|EDK22819.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346362|gb|EDZ32995.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 172

 Score =  100 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 2/171 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++L F  FS + +    + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IENLAFLFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV+  + F +M  D   E  E  K K+ F     +  +    ++    +   S +  L
Sbjct: 62  SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLTMLIGFKYQNISTDLPL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +       N + +   ++++Y    E    +LL++++ AI L  +     K
Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAITLTHKELTKEK 171


>gi|27464550|gb|AAO16126.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-A]
          Length = 147

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +                  +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKADSQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYINNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLML----------RHRRDIKRQDISKQLESN 183
           +L                   RQD+  Q+   
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 145


>gi|229315898|ref|YP_002860124.1| NADH dehydrogenase subunit 6.1 [Micromonas sp. RCC299]
 gi|229315908|ref|YP_002860134.1| NADH dehydrogenase subunit 6.2 [Micromonas sp. RCC299]
 gi|226431183|gb|ACO55588.1| NADH dehydrogenase subunit 6.1 [Micromonas sp. RCC299]
 gi|226431193|gb|ACO55598.1| NADH dehydrogenase subunit 6.2 [Micromonas sp. RCC299]
          Length = 268

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 61/108 (56%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+F+  A+++  +V+  +NP+YSV  LI  F N +GL LL+  +F AM+ LVVY
Sbjct: 1   MNLVLFYMFASFALLAGIMVIRAKNPVYSVLFLILVFCNVSGLLLLINLDFFAMVFLVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           VGA+ V FLF++MML++ +        R        G+L    I    
Sbjct: 61  VGAIAVLFLFVVMMLNVKLAEINDSILRYLPVGGVFGLLFFGEIFLLL 108


>gi|295697739|ref|YP_003590977.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           tusciae DSM 2912]
 gi|295413341|gb|ADG07833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           tusciae DSM 2912]
          Length = 179

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 1/142 (0%)

Query: 25  VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84
            R  +Y   S+   F+  AG+++LLGA+F+A   +++Y GA+ +  LF IM+   D    
Sbjct: 37  FRKVMYMALSIGLVFLGMAGMYVLLGADFLAFAQILIYAGAITILMLFAIMLTRHDEVEE 96

Query: 85  EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAY 144
           E R       +    +     ++ A     + A           N+V  + ++L+T Y  
Sbjct: 97  EERAGLRQWLAGLGAVALGAAMLWAIRTTTWPAAPAQPPWPA-QNSVTALAEMLFTNYVV 155

Query: 145 PLEISGFILLLSMIGAIVLMLR 166
           P E+   +L ++++GA++L  +
Sbjct: 156 PFELVSVLLTVALVGAVILARK 177


>gi|139390208|ref|YP_001123780.1| NADH dehydrogenase subunit 6 [Lobularia maritima]
 gi|221272330|sp|A4QLQ0|NU6C_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|134286985|dbj|BAF50605.1| NADH dehydrogenase ND6 [Lobularia maritima]
          Length = 176

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139
                        +    L    S  +  S  G +              +N + IG  L 
Sbjct: 90  FNLWTVGDGITSLVCTTILFSLISTILDTSWYGVIWTTRLNQLLEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL++++GAI +  +
Sbjct: 150 TDFFLPFELISIILLVALVGAISVARQ 176


>gi|27464568|gb|AAO16138.1| NADH dehydrogenase subunit 6 [Alcyonium rudyi]
 gi|27464571|gb|AAO16140.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-B]
 gi|27464583|gb|AAO16148.1| NADH dehydrogenase subunit 6 [Sarcophyton trocheliophorum]
          Length = 147

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLML----------RHRRDIKRQDISKQLESN 183
           +L                   RQD+  Q+   
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 145


>gi|189500533|ref|YP_001960003.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium
           phaeobacteroides BS1]
 gi|189495974|gb|ACE04522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium
           phaeobacteroides BS1]
          Length = 174

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 3/150 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
              ++ FYLF+ + + S+  VV  RN IYS FSL+F F   A L++ L A+F+A+  ++V
Sbjct: 4   TTYTVIFYLFAAVTVFSAAFVVFSRNIIYSAFSLLFTFFGVAALYVFLSADFIAVTQIMV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVG ++V  LF +M  +   ++     K   L      +L   +        V  AE   
Sbjct: 64  YVGGILVLLLFGVMFTN---KIMMTDLKTDVLNILPGIVLLLSITGGLIYTFVARAEWFT 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGF 151
           S +  +G+ VE IG    ++Y  P E+   
Sbjct: 121 STVQLQGSVVEKIGFETMSRYVLPFEMVSI 150


>gi|57234301|ref|YP_181654.1| proton-translocating NADH-quinone oxidoreductase, J subunit
           [Dehalococcoides ethenogenes 195]
 gi|57224749|gb|AAW39806.1| proton-translocating NADH-quinone oxidoreductase, J subunit
           [Dehalococcoides ethenogenes 195]
          Length = 160

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F++ +   I S+ LVV V+N  +S   LI  F++ AG+FLLL A+F+A + +++Y+G
Sbjct: 2   EIAFWIIAITCIASALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A+ V  +  IM L  +++      K        +  L   +      +M+ S+    S  
Sbjct: 62  AISVLIILAIM-LTREVQRGNLTNKLKIPALAVVTALGGIM-----TYMLISSNWTSSDA 115

Query: 125 VFKGNNVENIGKVLYTQ--YAYPLEISGFILLLSMIGAIVLMLRH 167
                    + ++L+    +   + I+G ILL+++IGAIVL+   
Sbjct: 116 PAPSTTTAGLAEMLFGSDGFGLGVLITGVILLVAIIGAIVLVRDK 160


>gi|27464547|gb|AAO16124.1| NADH dehydrogenase subunit 6 [Alcyonium digitatum]
          Length = 147

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYINNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLML----------RHRRDIKRQDISKQLESN 183
           +L                   RQD+  Q+   
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 145


>gi|86152855|ref|ZP_01071060.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843740|gb|EAQ60950.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 172

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 2/171 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++L F  FS + +    + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV+  + F +M  D   E  E  K K+ F     +  +    ++    +   S +  L
Sbjct: 62  SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISTDLPL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           +       N + +   ++++Y    E    +LL++++ AI L  +     K
Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAITLTHKELTKEK 171


>gi|283953817|ref|ZP_06371348.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794858|gb|EFC33596.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni
           414]
          Length = 172

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++L F  FS + +    + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV+  + F +M  D   E  E  K K+ F G   +  +    +     +   S +  L
Sbjct: 62  SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFGLVILSAVLLLAMFIGFKYQSVSTDLAL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           + L     N + +   ++++Y    E    +LL++++ AI L  +     K
Sbjct: 122 NDLALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAITLTHKELTKEK 171


>gi|282891841|ref|ZP_06300321.1| hypothetical protein pah_c198o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498274|gb|EFB40613.1| hypothetical protein pah_c198o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 168

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 5/160 (3%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++F  + I+SS  V++ R PIY+  S +   +  AGL+  L A+F+A++ ++VY GA++V
Sbjct: 10  WVFGTILILSSLGVISSRKPIYASLSFLMTLLALAGLYQQLSAQFIAVMQVLVYAGAILV 69

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAEGELSRLVF 126
            F+F+I++     E     K +      F   G+    ++  +  F         S    
Sbjct: 70  IFMFVIVLFQDAHEKIALFKAKSSPPLLFAAGGLFLFTMLFLSERFYNLKTSNGPSE--- 126

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           +   VE +GK LY  + +P E    + L+++IGA+ +  +
Sbjct: 127 EFGTVETLGKALYADFFFPFEAVTLLFLIAVIGAVFIARK 166


>gi|332885912|gb|EGK06156.1| hypothetical protein HMPREF9456_00030 [Dysgonomonas mossii DSM
           22836]
          Length = 167

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + FY+ + + + S+ + VT +  I S   L+F  +  AGL+LLL   F+  + + VY 
Sbjct: 3   EQIIFYILATIIVFSTIMAVTTQKIIRSATFLLFVLLGTAGLYLLLDYHFLMAVQIAVYG 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           G V+V F+F I++        +  K       F   + A   +    + + ++     + 
Sbjct: 63  GGVMVLFIFAILLTHEPGVDVKFEKPGRI---FISALAALAGLAICGHIIFYNVNKFYTY 119

Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
           +  +  N+++IG  +      QY  P E    +LL  +IG I++  + 
Sbjct: 120 ITQQELNMQDIGMGMMGTDKYQYLLPFEAISILLLACIIGGIMIARKR 167


>gi|322417690|ref|YP_004196913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M18]
 gi|320124077|gb|ADW11637.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           M18]
          Length = 161

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 83/165 (50%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++  FY+ + + +I +   +T R  + ++  L+ +F   A +F LLGA  +A   +++Y
Sbjct: 1   MEATLFYILAAVTLIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPLIAAFEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IMML++      P+ +   L  ++  +L    +V +   +V   +    
Sbjct: 61  AGAIMVLFLFVIMMLELGSPEKLPKPR---LSDWWPALLLVGAVVGSVVVLVADGQPAGL 117

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               + +      + L+ QY   +E+    LL +++GA+ L  R 
Sbjct: 118 PGFVEIS-ARQFAQTLFQQYGVAVEVISMQLLFALVGALYLGRRR 161


>gi|197131412|gb|ACH47224.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium macrorrhizum]
          Length = 176

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            N IYS FSL   F+  +  ++L  + FVA   L++YVGA+ +  LF +M ++      +
Sbjct: 30  TNLIYSAFSLGLVFICISFFYILANSHFVAAAQLLIYVGAINILILFAVMFINGSEYSKD 89

Query: 86  PRKKR--GFLGSFFIGILAAELI--VCASNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139
              +     + S     L   LI  +  +++         +++V K   +N + IG  L 
Sbjct: 90  FNLRTVGDGVTSLVCTTLFLSLISNILDTSWYGIIWTTRATQIVEKDLISNSQQIGIRLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176


>gi|229577807|ref|YP_002836143.1| NADH-plastoquinone oxidoreductase subunit 6 [Megaleranthis
           saniculifolia]
 gi|226933935|gb|ACO92068.1| NADH-plastoquinone oxidoreductase subunit 6 [Megaleranthis
           saniculifolia]
          Length = 177

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  +   +   + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIFSAFSLGLVLVCTSLFHIPSNSHFVAAAQLLIYVGAINVLIVFAVMFMNGSEYYND 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  +G     ++   + V     +  ++   +               NN + IG  
Sbjct: 90  FHL--WTVGDGVTSLVCTSIFVSLITTIPDTSWYGIIWTTRSNQILEQDLINNGQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+++IGAI +  +
Sbjct: 148 LSTDFFLPFELISIILLVALIGAIAMARQ 176


>gi|238898692|ref|YP_002924373.1| NADH dehydrogenase I chain J [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466451|gb|ACQ68225.1| NADH dehydrogenase I chain J [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 188

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 88/169 (52%), Gaps = 2/169 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + ++++++  V+   N I+S+  LI + +  + +F  LGA     + ++VY G
Sbjct: 2   EFSFYTAALVSVLATVRVIFHTNAIHSLLYLIISLLAISVVFFSLGAYLAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++  +  E +++ G    F++G      ++  +    F      S +
Sbjct: 62  AIMVLFVFVVMMLNL-GQSEEKQERVGLKPVFWVGPSLLCSLLLLALLKGFHGLSGES-M 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           +    + ++IG  L++ Y   +E++  +LL  ++ A  L   +++ ++ 
Sbjct: 120 IGTWVSAKSIGVHLFSAYILAVELASMLLLAGLVVAFHLGKENKKRLEE 168


>gi|332702764|ref|ZP_08422852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552913|gb|EGJ49957.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 168

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 7/168 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +    F  +  +    S       N + ++  LI      AG+++LL A FVA++ ++VY
Sbjct: 4   LAKAAFVFYVLVIAGGSLAAALSHNMVRALLGLILTMFGVAGMYMLLNAPFVALMQVLVY 63

Query: 63  VGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VGAV V   F IM+       E ++P   R +L +    +L    +       V+     
Sbjct: 64  VGAVAVLVFFAIMLTRTPTGGEESQPNPSRKYLLALLTAMLPGAALG-----WVWLKHPV 118

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           LS +      +E +G+ L   Y    E+   +L ++M GA++L  R R
Sbjct: 119 LSDVTPVQAPMEALGQGLMEPYILAFELISVVLFVAMSGAVILAFRKR 166


>gi|290489866|gb|ADD31340.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Cornus
           florida]
          Length = 176

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N I+S FSL    V  +  ++L  + FVA   L++YVGA+ +  +F +M ++      + 
Sbjct: 31  NTIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILIIFAVMFMNGSEYHKDF 90

Query: 87  RKK-------RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
                          S F+ ++   L       +  +   ++       NN + IG  L 
Sbjct: 91  YLWTVGDGVTSMVCTSIFVSLITTILDTSWYGIIWTTRSNQILEQDL-INNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176


>gi|18640458|ref|NP_570147.1| NADH-ubiquinone oxidoreductase chain 6 [Hypocrea jecorina]
 gi|18496639|gb|AAL74172.1|AF447590_9 NADH-ubiquinone oxidoreductase chain 6 [Hypocrea jecorina]
          Length = 256

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 41/202 (20%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S +A++    V+  +NPI S+ SLI  F + +   +L G  F+    L+VY+GAV + 
Sbjct: 28  ILSVIALLFGIAVIVNKNPIASLLSLIGLFASISVYLILSGLTFIGFSYLIVYIGAVSIL 87

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--------------- 114
           FLFI+M+++I     +         + FI IL    +     + +               
Sbjct: 88  FLFILMLINIRTSELQSNNINSIPLALFITILLNYALFQLLPYSIAIINSYNNKLSNIIY 147

Query: 115 --------------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
                                     F         + + +++  IG +LYT Y   L I
Sbjct: 148 YLPTSKYNDIITHISKNLDINTANVMFVTSNSWDGNMAETSHISTIGNILYTSYNMWLFI 207

Query: 149 SGFILLLSMIGAIVLMLRHRRD 170
           + FILLL+M+GAIV+ ++  R+
Sbjct: 208 ASFILLLAMVGAIVITIKQERN 229


>gi|290489854|gb|ADD31334.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Meliosma aff.
           cuneifolia Moore 333]
          Length = 176

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 8/148 (5%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78
            NPI+S FSL    V  +   +   + FVA   L++YVGA+ V  LF +M +       D
Sbjct: 30  TNPIFSAFSLGLVLVCISLFHIPSNSHFVAAAQLLIYVGAINVLILFAVMFMSGSEYYND 89

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
             +             S F+ ++           +  +   ++       NN + IG  L
Sbjct: 90  FQLWTVGDGVTSLVCTSIFVSLITTIPDTSWYGIIWTTRSNQIIEQDL-INNSQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P E+   ILL+++IGAI +  +
Sbjct: 149 STDFFLPFELISIILLVALIGAISMARQ 176


>gi|83589832|ref|YP_429841.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Moorella
           thermoacetica ATCC 39073]
 gi|83572746|gb|ABC19298.1| NADH dehydrogenase subunit J [Moorella thermoacetica ATCC 39073]
          Length = 168

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 4/170 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + + +L F++ + + I ++  VV ++N ++S   L+  F   AGL++LL AEF+A + L+
Sbjct: 2   LDISALLFWVLAAITIAAALAVVLLKNIVHSALYLVLTFAGVAGLYILLQAEFLAAVQLL 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GAV +  +F +M+       A       +L +  + +    +IV  +  M ++    
Sbjct: 62  VYAGAVAILIVFAVMLTRRGDIKASNLFNINYLAAGVVSLALFVVIVLGTGRMTWTTAPA 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +                  ++A P E++  +LL++M+GAI+L    + +
Sbjct: 122 QAPANNVAAIA----NAFLGRFAIPFEVAAVLLLVAMVGAILLARGGKPE 167


>gi|283956942|ref|ZP_06374414.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791443|gb|EFC30240.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 172

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 2/166 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++L F  FS + +    + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            GAV+  + F +M  D   E  E  K K+ F     +  +    ++    +   S +  L
Sbjct: 62  SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISTDLPL 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +       N + +   ++++Y    E    +LL++++ AIVL  + 
Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTHKE 166


>gi|27464574|gb|AAO16142.1| NADH dehydrogenase subunit 6 [Klyxum simplex]
          Length = 147

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    ++                 +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKIDSQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I   S+ +  S +   + ++    N+  IG  LYT Y   + I+  +LL +MIGAI
Sbjct: 54  GLSVIFLFSSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLAAMIGAI 113

Query: 162 VLML----------RHRRDIKRQDISKQLESN 183
           +L                   RQD+  Q+   
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 145


>gi|27464586|gb|AAO16150.1| NADH dehydrogenase subunit 6 [Lobophytum pauciflorum]
          Length = 147

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLML----------RHRRDIKRQDISKQLESN 183
           +L                   RQD+  Q+   
Sbjct: 114 LLAKQPNSPFLYNFHGESLRSRQDLFLQISRE 145


>gi|295137003|ref|YP_003587550.1| NADH dehydrogenase subunit 6 [Pisum sativum]
 gi|293338575|gb|ADE43548.1| NADH dehydrogenase subunit 6 [Pisum sativum]
          Length = 176

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 6/171 (3%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            M            ++ S  VV + NPI+S FSL    V  + L++L  + FVA   L++
Sbjct: 6   TMHDFLLVFLGSGLLLGSLGVVLLTNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLI 65

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG----ILAAELIVCASNFMVFSA 117
           YVGA+ +  +F +M ++      +        G   I      ++   I+  +++     
Sbjct: 66  YVGAINILIIFAVMFMNSSEYYQDLNLWTVGDGMTLIVCTSIFVSLITIISDTSWYGIIW 125

Query: 118 EGELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
               ++++ +   +  + IG  L T +  P E+   ILL+S+IGAIV+  +
Sbjct: 126 TTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVSLIGAIVVARQ 176


>gi|115604988|ref|YP_784440.1| NADH-plastoquinone oxidoreductase subunit 6 [Drimys granadensis]
 gi|122164393|sp|Q06GU3|NU6C_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|112032716|gb|ABH88351.1| NADH-plastoquinone oxidoreductase subunit 6 [Drimys granadensis]
          Length = 176

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +         I+    VV   NPI+S FSL    V  +   +L  + FVA   L++Y
Sbjct: 7   IHDILLVFLGSGLILGGLGVVLFTNPIFSAFSLGLVLVCISLFHILSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK---RGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VGAV V  +F +M ++      +        G        IL + +   +          
Sbjct: 67  VGAVNVLIIFAVMFMNGSEYYNDFYLWTVGDGVTSLVCTSILFSLITTISDTSWYGIIWT 126

Query: 120 ELSRLVFK---GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             S  + +    +NV+ IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 127 TGSNQIIEQDLISNVQQIGIHLSTDFYLPFELISIILLVALIGAIAMARQ 176


>gi|92115239|ref|YP_575167.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043]
 gi|91798329|gb|ABE60468.1| NADH dehydrogenase subunit J [Chromohalobacter salexigens DSM 3043]
          Length = 203

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 75/143 (52%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FYL + +A++++  V+T  +P++++  LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   EIAFYLSAVVAVLATLGVITGTHPVHALLYLIVSLIAVALVFFALGAPFAGALEVIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++    A+  +      ++    + + +++      +  A+    R+
Sbjct: 62  AIMVLFVFVVMMLNLGESTAQQERAWLRPRTWLGPAVLSSVLLLVLLTSLIGAD-VGGRI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                  + +G +L+  Y   +E
Sbjct: 121 HGDTLTAKAVGTLLFGPYLVVVE 143


>gi|167752194|ref|ZP_02424321.1| hypothetical protein ALIPUT_00436 [Alistipes putredinis DSM 17216]
 gi|167660435|gb|EDS04565.1| hypothetical protein ALIPUT_00436 [Alistipes putredinis DSM 17216]
          Length = 169

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 8/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +  + F + +   + S+ L VT +  + +   L+F     AG++  L   F+  + L+
Sbjct: 3   ITLDLIVFTVLAVFTLASAVLAVTTKRILRAATFLLFVLFGTAGIYFQLNYSFLGAVQLL 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y G + V ++F I++   + + AE  +   F+    +GILA    +    F+    +  
Sbjct: 63  IYAGGITVLYVFSILLTSSEGDKAEKLRGYKFV----VGILATLAGLAICLFVTLRHQFL 118

Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
                     V  IG  L +     Y  P E+   +LL  ++G I++  + 
Sbjct: 119 PEHFEHGELAVREIGFALMSPEKQGYLLPFEVISLLLLACIVGGILIARKR 169


>gi|330503263|ref|YP_004380132.1| NADH dehydrogenase subunit J [Pseudomonas mendocina NK-01]
 gi|328917549|gb|AEB58380.1| NADH dehydrogenase subunit J [Pseudomonas mendocina NK-01]
          Length = 169

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + +A+ S+  VVT  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYFAAGVAVASTVGVVTNTNPVHALLYLIVSLLAVSMVFFALGAPFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++    A  +++R      ++G      ++      V       + +
Sbjct: 62  AIMVLFVFVVMMLNL-GPAAADQERRWLTPGIWVGPAILSALLLGQLLYVLLNHVSDAHI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                  + +G  L+  Y   +E
Sbjct: 121 GHTTVEAKAVGISLFGPYLLAVE 143


>gi|262400770|gb|ACY66259.1| NADH dehydrogenase subunit 6 [Brassica napus]
          Length = 176

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILANSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSID 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139
                        +    L    S  +  S  G +              +N + IG  L 
Sbjct: 90  FNLWTVGNGITSVVCTTILFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176


>gi|294507450|ref|YP_003571508.1| NADH dehydrogenase I, J subunit [Salinibacter ruber M8]
 gi|294343778|emb|CBH24556.1| NADH dehydrogenase I, J subunit [Salinibacter ruber M8]
          Length = 169

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 92/162 (56%), Gaps = 1/162 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F+L + +A+ ++  ++  RNP+ S   L+      AGL+L L A F+ +I ++VY GA+
Sbjct: 6   MFFLLATVAVAAALGMIIARNPVSSALWLVLNLFCIAGLYLTLNASFIGVIQILVYAGAI 65

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRLV 125
           +V FLF+IM+L++         +   +G F +G +L ++L+   +       +   +   
Sbjct: 66  MVLFLFVIMLLNLSALPELEEIEWASIGGFAVGLVLLSQLLYVVALQFELGVDPIGAEAA 125

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +  +  ++G++L+T+YA  L+++G +LL + +GA++L  R 
Sbjct: 126 AEAGSAASLGEILFTRYALHLQVAGILLLAATVGAVLLAQRR 167


>gi|290489846|gb|ADD31330.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Dillenia
           indica]
          Length = 176

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPI+S FSL    V  +  ++   + FVA   L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIFSAFSLGLVLVCISLFYISANSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
                  +G     ++   + V     +  ++   +               +N + IG  
Sbjct: 90  FHL--WTIGDGISSLVCTSIFVSLITTIPDTSWYGIIWTTRSNQIIEQDLISNGQQIGIH 147

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+++IGAI    +
Sbjct: 148 LSTDFVLPFELISIILLVALIGAIAAARQ 176


>gi|27464580|gb|AAO16146.1| NADH dehydrogenase subunit 6 [Sinularia gaweli]
          Length = 147

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I    + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI
Sbjct: 54  GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113

Query: 162 VLML----------RHRRDIKRQDISKQLESN 183
           +L                   +QD+  Q+   
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSKQDLFLQISRE 145


>gi|171914648|ref|ZP_02930118.1| NADH dehydrogenase subunit J [Verrucomicrobium spinosum DSM 4136]
          Length = 187

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 20/185 (10%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++ FYLFS + ++   +VV +RNP+ S  SL+ +F   A LF+ L A F+ +I ++VY
Sbjct: 1   MPAVLFYLFSALTLVFGLMVVVLRNPVASALSLVMSFAGLAALFISLDAYFIGIIQILVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+V FLFIIM+LDI  E  +       +G   + I+    +      +    +    
Sbjct: 61  AGAVMVLFLFIIMLLDIKAEALKKVNAFSVVGGALLAIVFIVQLGMILGGLEAGKKTVAD 120

Query: 123 RLVF--------------------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
             +                        + + +G  L+ +Y + +++ G +LL+  IG ++
Sbjct: 121 VPIHFEAAAETQKLPTIKEDLAKKSLPDTKLVGMALFHRYPFQIQLMGALLLVGTIGVVI 180

Query: 163 LMLRH 167
           L  R 
Sbjct: 181 LSKRE 185


>gi|295136962|ref|YP_003587796.1| NADH dehydrogenase subunit 6 [Lathyrus sativus]
 gi|293338684|gb|ADE43656.1| NADH dehydrogenase subunit 6 [Lathyrus sativus]
          Length = 176

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI--EV 83
            NPI+S FSL    V  + L++L  + FVA   L++YVGA+ +  +F +M ++     + 
Sbjct: 30  TNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLIYVGAINILIIFAVMFMNSSEYYQD 89

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKVLY 139
                    +       +   LI   S+   +                 +  + IG  L 
Sbjct: 90  LNLWTVGDGITLIVCTSIFVSLITIISDTSWYGIIWTTRPNQIIEQDLISTSQQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+S+IGAIV+  +
Sbjct: 150 TDFFLPFELISIILLVSLIGAIVVARQ 176


>gi|150004308|ref|YP_001299052.1| NADH dehydrogenase I, chain J [Bacteroides vulgatus ATCC 8482]
 gi|237709344|ref|ZP_04539825.1| NADH dehydrogenase I [Bacteroides sp. 9_1_42FAA]
 gi|237724578|ref|ZP_04555059.1| NADH dehydrogenase subunit I [Bacteroides sp. D4]
 gi|254883417|ref|ZP_05256127.1| NADH dehydrogenase subunit I [Bacteroides sp. 4_3_47FAA]
 gi|265755020|ref|ZP_06089934.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_33FAA]
 gi|294776881|ref|ZP_06742344.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           vulgatus PC510]
 gi|319644243|ref|ZP_07998756.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_40A]
 gi|149932732|gb|ABR39430.1| NADH dehydrogenase I, chain J [Bacteroides vulgatus ATCC 8482]
 gi|229437137|gb|EEO47214.1| NADH dehydrogenase subunit I [Bacteroides dorei 5_1_36/D4]
 gi|229456729|gb|EEO62450.1| NADH dehydrogenase I [Bacteroides sp. 9_1_42FAA]
 gi|254836210|gb|EET16519.1| NADH dehydrogenase subunit I [Bacteroides sp. 4_3_47FAA]
 gi|263234631|gb|EEZ20210.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_33FAA]
 gi|294449357|gb|EFG17894.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           vulgatus PC510]
 gi|317384234|gb|EFV65206.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_40A]
          Length = 167

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 8/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q + F + +    + S L VT    + +   L+F     AG++  L   F+  + L+
Sbjct: 1   MTLQLIVFIVLALFIAVCSVLAVTTSRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y G + V ++F I++     + AE  K     G    G ++    +    F++   E  
Sbjct: 61  IYAGGITVLYVFSILLTSSQGDKAERLKN----GKMVAGAISTIAGLAICLFVMLKNEFL 116

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
            S  V    +V  IG  L      QY  P E+   +LL  ++G I++  + 
Sbjct: 117 PSHFVHGELDVRTIGHALMGMEKYQYILPFEVISVLLLACIVGGILIARKR 167


>gi|167391857|ref|YP_001671735.1| NADH dehydrogenase subunit 6 [Carica papaya]
 gi|221272314|sp|B1A987|NU6C_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|166344184|gb|ABY86834.1| NADH-plastoquinone oxidoreductase subunit 6 [Carica papaya]
          Length = 176

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-------I 79
           NPIYS FSL F     +  ++L  + FVA   L++YVGA+ V  +F +M ++        
Sbjct: 31  NPIYSAFSLGFVLACISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYRDF 90

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
           ++             S F+ ++   L       +  +   ++       ++ + IG  L 
Sbjct: 91  NLWTIGDGITSLVCTSIFLSLITTILDTSWYGVIWTTRLNQILEQDLISSS-QQIGIHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176


>gi|292559473|ref|YP_003540841.1| NADH dehydrogenase subunit 6 [Hartmannella vermiformis]
 gi|290775726|gb|ADD62225.1| NADH dehydrogenase subunit 6 [Hartmannella vermiformis]
          Length = 205

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 107/197 (54%), Gaps = 13/197 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + F+  +FM  ++  LV+  +NP+ SV  L+  F  +A LF+LL  +F+AM+ ++VY
Sbjct: 2   LTEVIFFGLAFMIFLAGLLVIFSKNPVQSVLFLVVVFCLSAQLFVLLEVDFLAMVLIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V FLFI+MML+I +        R F  +  +G++    IV +  + +      + 
Sbjct: 62  VGAIAVLFLFIVMMLNIRVVELSEILNRYFPLATIVGLIIFSEIVFSLYYSLGYNYSNIF 121

Query: 123 RLVF-----KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD------- 170
            L +       +NV ++G VLYT ++  L ISG +LLL+MI +I+L L            
Sbjct: 122 YLDWYKSFLNHSNVVSLGLVLYTYFSPFLIISGILLLLAMISSIMLTLDLPNSGELNLST 181

Query: 171 -IKRQDISKQLESNPDN 186
            +K+Q I  Q++   ++
Sbjct: 182 LVKKQSIPDQVDRPTND 198


>gi|27464577|gb|AAO16144.1| NADH dehydrogenase subunit 6 [Cladiella sp. CSM-2002]
          Length = 147

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 42  AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    ++A                +
Sbjct: 1   AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKIASQDHSHFLP-------V 53

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
              +I   S+ +  S +   + ++    N+  IG  LYT Y   + I+  +LL +MIGAI
Sbjct: 54  GLSIIFLFSSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLIASLVLLAAMIGAI 113

Query: 162 VLML----------RHRRDIKRQDISKQLESN 183
           +L                   RQD+  Q+   
Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 145


>gi|212693816|ref|ZP_03301944.1| hypothetical protein BACDOR_03337 [Bacteroides dorei DSM 17855]
 gi|212663705|gb|EEB24279.1| hypothetical protein BACDOR_03337 [Bacteroides dorei DSM 17855]
          Length = 167

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 8/171 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q + F + +    I S L VT    + +   L+F     AG++  L   F+  + L+
Sbjct: 1   MTLQLIVFIVLALFIAICSVLAVTTSRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y G + V ++F I++     + AE  K     G    G ++    +    F++   E  
Sbjct: 61  IYAGGITVLYVFSILLTSSQGDKAERLKN----GKMVAGAISTIAGLAICLFVMLKNEFL 116

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
            S  V    +V  IG  L      QY  P E+   +LL  ++G I++  + 
Sbjct: 117 PSHFVHGELDVRTIGHALMGMEKYQYILPFEVISVLLLACIVGGILIARKR 167


>gi|225544175|ref|YP_002720165.1| ndhG [Jatropha curcas]
 gi|224979616|gb|ACN72743.1| ndhG [Jatropha curcas]
          Length = 176

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 6/148 (4%)

Query: 25  VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84
             NPIYS FSL F  V  +  ++L  + FVA   L++YVGA+ V  LF +M ++      
Sbjct: 29  FTNPIYSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYK 88

Query: 85  EPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKVL 138
           +         + S     +   LI   S+   +                 +N + IG  L
Sbjct: 89  DFNLWTVGNGVTSLVCTSIFISLITIISDTSWYGIIWTTRTNQIIEQDLISNGQQIGIHL 148

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166
            T +  P +    ILL+++IGAI +  +
Sbjct: 149 STDFFLPFDFISVILLVALIGAIAVARQ 176


>gi|84508581|ref|YP_448629.1| NADH dehydrogenase subunit 6 [Fucus vesiculosus]
 gi|39653304|gb|AAR29323.1| NADH dehydrogenase subunit 6 [Fucus vesiculosus]
          Length = 263

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 58/248 (23%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F   + +       V++ +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFIFLTILGASLGVKVISTQNPVYSGLYLVLLFFLGSAISFLLGVEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           + V  LF++MMLD   I+   +  +K+  ++G  F       LI  +S  M F       
Sbjct: 65  IAVLVLFVVMMLDVKAIENPWSVNQKRFFYIGISFFVFFLILLISNSSLLMAFRVRSTSI 124

Query: 123 -------RLVFKGNNVENI----------------------------------------- 134
                   +VF  ++ +NI                                         
Sbjct: 125 ISLLASFNVVFHNDDTKNILVGLLDENLTELFRLWFFHDQIINSFDKNTMWFVDFDSPCG 184

Query: 135 ----GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190
                 +LY+ +A  L I+G +LL++M+GAI L L+       + + KQL     N++  
Sbjct: 185 LNDPSYLLYSTHAILLIIAGVVLLIAMVGAISLTLQKN---CPESLYKQLGRESKNAVFT 241

Query: 191 VKVKSGKG 198
           +K K   G
Sbjct: 242 IKEKPNSG 249


>gi|189162324|ref|YP_001936570.1| NADH dehydrogenase subunit 6 [Fagopyrum esculentum subsp.
           ancestrale]
 gi|221272323|sp|B2XWJ4|NU6C_FAGEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|166065410|gb|ABY79785.1| NADH dehydrogenase subunit 6 [Fagopyrum esculentum subsp.
           ancestrale]
          Length = 176

 Score = 99.3 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 6/170 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +       F    I+    V+   NPI+S FSL    V  +  +++  ++FVA   L++Y
Sbjct: 7   IHDFLLVFFGSGLILGGLGVILFTNPIFSAFSLGLVLVCISLFYIIANSQFVASAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRK------KRGFLGSFFIGILAAELIVCASNFMVFS 116
           VGA+ V  +F +M ++        R           + +    +L   ++  +   ++++
Sbjct: 67  VGAINVLIIFAVMFINGLEYDKNLRLFTLGDGMTLVICTGIFFLLITTILNTSGYGIIWT 126

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +          NN + IG  L T +  P E+   ILL+++IGAI +  +
Sbjct: 127 TKLNQILEQDLINNSQQIGIHLSTDFFPPFELISIILLVALIGAIAVARQ 176


>gi|298246360|ref|ZP_06970166.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter
           racemifer DSM 44963]
 gi|297553841|gb|EFH87706.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter
           racemifer DSM 44963]
          Length = 174

 Score = 99.3 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 13/176 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    L F + +  +  S+  V+  +N +YS  SLI      A  +L LGA F+A++ ++
Sbjct: 1   MTPTILAFAVLAVASAASAIGVIAFKNAVYSALSLILTLFFLAMFYLQLGAMFIAVVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119
           +Y GA++V FLF++ ML  D   A+ + +       ++G L   ++V A ++++F     
Sbjct: 61  IYAGAIMVLFLFVVTMLTSD---AQDKGEDRIPWQRYVGSLLGVVLVGALSYLIFKNVSG 117

Query: 120 ---------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                      S  V    NVE  G  L+  Y +P E++  +++++++GA+V   R
Sbjct: 118 SPTVLKAGESYSHAVATHGNVEAFGLALFHGYLFPFEVTSLLIVVAILGALVFGRR 173


>gi|11465891|ref|NP_066440.1| NADH dehydrogenase subunit 6 [Ochromonas danica]
 gi|10505224|gb|AAG18406.1|AF287134_31 NADH dehydrogenase subunit 6 [Ochromonas danica]
          Length = 205

 Score = 99.3 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 90/180 (50%), Gaps = 14/180 (7%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               VV   +PI SV  LI AF  A  +  L   +F  ++ +++YVGA+ V FLF++MML
Sbjct: 15  CGLFVVFSTSPIESVLFLILAFCIAGIILFLFNLDFFGIMFIIIYVGAIAVLFLFVVMML 74

Query: 78  DIDIE-----------VAEPRKKRGFLGSFFIGI---LAAELIVCASNFMVFSAEGELSR 123
           +I ++           +         L + F+ +   +  E+    ++ +++S       
Sbjct: 75  NIKLQYNFLDRFTFKNIVYILIVLLLLYTIFLNLYSQIFIEMPFLFNSDLLYSYTIIEKG 134

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           +    +N++  G+VLY  ++  + ++GFILL++++G IVL L   +   ++   +QL  +
Sbjct: 135 IFDHLSNIKVFGQVLYNYFSLYVPLAGFILLIALVGVIVLTLHFNKFKNKELDFRQLSRS 194


>gi|78188618|ref|YP_378956.1| NADH dehydrogenase I subunit 6 [Chlorobium chlorochromatii CaD3]
 gi|78170817|gb|ABB27913.1| NADH dehydrogenase subunit J [Chlorobium chlorochromatii CaD3]
          Length = 171

 Score = 98.9 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +  FYLF+ + ++S+  VV  RN IYS FSL+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 8   TAIFYLFAAITVLSAAYVVFTRNVIYSAFSLLFTFFGMAALYVFLSADFIAVTQVVVYVG 67

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V  LF +M  +    + + + K   L      +L   +I         ++  ++S  
Sbjct: 68  GILVLLLFGVMFTN---SIMQTKLKSDVLHVIPGVVLLVGMIGSMLYMYYTTSIWKISAT 124

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGF 151
               + VE +G    ++Y  P E+   
Sbjct: 125 PLTESIVERVGFETMSRYVLPFEMVSI 151


>gi|56791578|gb|AAW30327.1| NADH dehydrogenase subunit 6 [Agave attenuata]
          Length = 158

 Score = 98.9 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S  A++S  +VV  +NP++SV   I  F + +GL LLLG +F AMI+ VVY+GA
Sbjct: 2   MILSVLSSPALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVYIGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124
           + V FLF++MM +I I        R    S  IG IL  E+     N  +       +  
Sbjct: 62  IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTT 121

Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGF 151
                     V    N+E +G +LYT Y+    +   
Sbjct: 122 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSL 158


>gi|222054370|ref|YP_002536732.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           FRC-32]
 gi|221563659|gb|ACM19631.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp.
           FRC-32]
          Length = 161

 Score = 98.9 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 87/165 (52%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FY+ + + ++++   +T ++ ++++  L+ +F   A +F LL A  VA+  +++Y
Sbjct: 1   MEQALFYILAAVTVVATIFAITEKHAVHAIVYLVTSFFALAVIFFLLSAPLVAVFEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IMMLD+         +      ++  IL   +I+ A   +V + +  + 
Sbjct: 61  AGAIMVLFMFVIMMLDLSHPEKIGLPR---FAHWWPAILLGGIILAAFITLVMARQQAVP 117

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             V +   + +  + L+ +Y   +EI    LL +++GA+ L  R 
Sbjct: 118 GEVAEIG-IRDFSRTLFQKYGIAVEIISMQLLFALVGALYLGRRR 161


>gi|325105658|ref|YP_004275312.1| NADH dehydrogenase subunit J [Pedobacter saltans DSM 12145]
 gi|324974506|gb|ADY53490.1| NADH dehydrogenase subunit J [Pedobacter saltans DSM 12145]
          Length = 167

 Score = 98.9 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 92/163 (56%), Gaps = 2/163 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FY  +F++I  S LV+  +NP++SV  LI  F      ++LL A+F+A++  +VY+GA+
Sbjct: 3   LFYFVAFLSIFFSLLVIFTKNPVHSVLYLIATFFTFTIHYILLNAQFLAVVNFIVYMGAI 62

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V FLF++M+++++ +    +     +     G      +V A   M   +   L     
Sbjct: 63  MVLFLFVLMLMNLNKDTEPMKSNLLKIVGVIAGGGLLVTLVAAMKTMYTDSPSVLQNPEI 122

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
               V+N+GKVL++++  P E+S  +LL +M+GA++L  + +R
Sbjct: 123 GL--VKNLGKVLFSEFLLPFELSSLLLLSAMVGAVLLAKQEKR 163


>gi|320532479|ref|ZP_08033302.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320135309|gb|EFW27434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 292

 Score = 98.9 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 77/172 (44%), Gaps = 6/172 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F + + + +     V+T +  + +  ++I   ++ A L+++  + F+ +  +VVY 
Sbjct: 27  EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 86

Query: 64  GAVIVFFLFIIMMLDIDIEV---AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           GAV+   LF+IM++ +  +    A     R  +       LA  L        + +  G 
Sbjct: 87  GAVMTLVLFVIMLVGVGGDEPVGAAGTVMRRPVLILLGLGLAGALTAVVWRSTLPTPVGL 146

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +      +    +   LY  +   +E++  +L+++ +GA+ L  R R   +
Sbjct: 147 KNGAKAAPD---LLAVTLYHDHVVTMELTAILLIVAAVGALTLTHRQRIRAR 195


>gi|291010624|ref|YP_003495129.1| NADH dehydrogenase subunit 6 [Pycnococcus provasolii]
 gi|258406747|gb|ACV72093.1| NADH dehydrogenase subunit 6 [Pycnococcus provasolii]
          Length = 199

 Score = 98.9 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 112/201 (55%), Gaps = 11/201 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+ Q       + +A  + FLV++ ++P++SV SLIF+FV  + + L L  + +A+I L+
Sbjct: 1   MLFQQSILCFIAGLACGAGFLVISSKSPVHSVLSLIFSFVLCSFVLLTLEIDILALIFLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI---------GILAAELIVCASN 111
           VYVGA+ + FLF++M+L++ +  A     + F   FF+          ++ A   V  ++
Sbjct: 61  VYVGAIAILFLFVVMILNVKVAEARANLFQYFPLGFFLLSLLYFDLGLLMPASFSVDVAH 120

Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
           F+ F    E  + V     +E+IG +LYT + + L  +G +LLL+++GAI+L L     +
Sbjct: 121 FIPF--YLEWPKAVLSFGCLESIGFLLYTYFPFYLIGAGLLLLLAIVGAILLTLHRGVGV 178

Query: 172 KRQDISKQLESNPDNSIVMVK 192
            RQ++S Q   +    + MV+
Sbjct: 179 HRQEVSFQNRRDWVEVLHMVQ 199


>gi|18652802|gb|AAL76100.1| NADH dehydrogenase subunit VI [Hypocrea pseudokoningii]
          Length = 250

 Score = 98.9 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 41/202 (20%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S +A++    V+  +NPI S+ SLI  F + +   +L G  F+    L+VY+GAV + 
Sbjct: 22  ILSVIALLFGIAVIVNKNPIASLLSLIGLFASISVYLILSGLTFIGFSYLIVYIGAVSIL 81

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--------------- 114
           FLFI+M+++I     +         + FI IL    +     + +               
Sbjct: 82  FLFILMLINIRTSELQSNNINSIPLALFITILLNYALFQLLPYSIAIINSYNNKLSNIIY 141

Query: 115 --------------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
                                     F         + + +++  IG +LYT Y   L I
Sbjct: 142 YLPTSKYNDIITHISKNLDINTANVMFVTSNSWDGNMAETSHISTIGNILYTSYNMWLFI 201

Query: 149 SGFILLLSMIGAIVLMLRHRRD 170
           + FILLL+M+GAI++ ++  R+
Sbjct: 202 ASFILLLAMVGAIIITIKQERN 223


>gi|325121089|gb|ADY80612.1| NADH dehydrogenase I chain J [Acinetobacter calcoaceticus PHEA-2]
          Length = 172

 Score = 98.9 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 4   FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVF 126
           V F+F++MML++     E  +K     ++    L + L+     +M+      +S  L  
Sbjct: 64  VLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGA 123

Query: 127 KGNNVENIGKVLYTQYAYPLE 147
           +    + +G+ L+T Y   +E
Sbjct: 124 QVIGPKVVGQALFTHYLLLVE 144


>gi|148656358|ref|YP_001276563.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus
           sp. RS-1]
 gi|148568468|gb|ABQ90613.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus
           sp. RS-1]
          Length = 169

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F + + +AI  +  ++   N I+S   L+  FV  + L++LL A F+ +I L+VY
Sbjct: 1   MELVIFLITAVVAIAGAVAMLLSPNAIHSAIFLLINFVAISVLYVLLYAPFLFVIQLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA+IV FLF++M+L    E AE  ++R          LAA L+       + +     +
Sbjct: 61  AGAIIVLFLFVVMLLGA--ERAEDTRERFAWQRPLGVSLAAILLGLLGYLALRNPSAGAT 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                    E I + L+T Y  P EI+ F+LL +++G +VL +
Sbjct: 119 VADQHFAAPERIAEALFTTYLLPFEITAFLLLAAIVGVVVLHM 161


>gi|313199668|ref|YP_004021284.1| NADH-plastoquinone oxidoreductase subunit 6 [Isoetes flaccida]
 gi|291575397|gb|ADE18110.1| NADH-plastoquinone oxidoreductase subunit 6 [Isoetes flaccida]
          Length = 189

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 10/174 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +    F       I+    VV++ N +YS       F   +  +LLL A+FVA + + ++
Sbjct: 8   IHEAIFVSLESGPILGGPGVVSLTNIVYSAPLSGSVFACISPPYLLLNADFVAAVQISIH 67

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV V  +  +   +          +    G      L   L       ++ ++   +S
Sbjct: 68  VGAVNVSIVSAVTSTNEPQSFHLSTYRTA--GDGITLALCISLFFLPIIMILDTSWSRVS 125

Query: 123 RLVFKGN--------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            +V  G         +V+ IG  L T    P E+   +LL++++GAI    R +
Sbjct: 126 LIVLPGGIVEEPLTDDVQRIGSHLLTDSLLPFELLSIVLLVALVGAITTARRGK 179


>gi|313183964|ref|YP_004021818.1| NADH-plastoquinone oxidoreductase subunit 6 [Equisetum arvense]
 gi|281371684|gb|ADA63617.1| NADH-plastoquinone oxidoreductase subunit 6 [Equisetum arvense]
          Length = 200

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +     I+ S  VV++ N IYS F L F F+  A L+L L A+F+A   +++YVGAV V 
Sbjct: 14  IIETGIILGSLGVVSLSNIIYSAFLLGFVFICIALLYLTLNADFLAAAQILIYVGAVNVL 73

Query: 70  FLFIIMMLDIDIEV--AEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSAEGELSRL 124
            +F +M+++   E+   E       +       L   L     N      +S +  ++ L
Sbjct: 74  IVFAVMLINKPKEINTLEKWNISNNISLLLCTSLFVSLSFTILNTNWSNLYSIQHSVNIL 133

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
               +N+  IG  L T++  P E+   +LL+++IGAI +  R
Sbjct: 134 DQMPSNIRLIGNNLLTKFLIPFELLSILLLVALIGAITIARR 175


>gi|222839810|ref|YP_002587031.1| NADH dehydrogenase subunit 6 [Glomus intraradices]
 gi|306960129|ref|YP_003875545.1| NADH dehydrogenase subunit 6 [Glomus irregulare]
 gi|222136772|gb|ACM45004.1| NADH dehydrogenase subunit 6 [Glomus intraradices]
 gi|306490559|gb|ADM94800.1| NADH dehydrogenase subunit 6 [Glomus irregulare]
          Length = 192

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 21/190 (11%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M      L  F+A++S+  V+T  NPI +V  LI  F+  +    LLG  F+A+  L++Y
Sbjct: 1   MSPFLLELLPFVAVLSAIFVITAVNPILAVLFLIAVFITVSAYLALLGLTFLALSYLIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119
           VGA+ + FLF+IMMLDI +       +          ++    +   +   +F  +    
Sbjct: 61  VGAIAILFLFVIMMLDIKLAELSSSGEEASKVYPIAFLIGTPFLWTLTGSPLFRGDTLYS 120

Query: 120 ------------------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
                             + + L    +N+ ++G  LYT Y   L  +G ILLL++IG I
Sbjct: 121 WFDQTTLGIAHISDPSALQWTNLFAAFSNIHSLGVCLYTIYPLWLIYAGIILLLAIIGPI 180

Query: 162 VLMLRHRRDI 171
           +L L      
Sbjct: 181 ILCLDKTSGS 190


>gi|164565466|ref|YP_001649183.1| NADH dehydrogenase subunit 6 [Seriatopora hystrix]
 gi|164565480|ref|YP_001649196.1| NADH dehydrogenase subunit 6 [Seriatopora caliendrum]
 gi|148669052|gb|ABR01610.1| NADH dehydrogenase subunit 6 [Seriatopora hystrix]
 gi|148669076|gb|ABR01623.1| NADH dehydrogenase subunit 6 [Seriatopora caliendrum]
          Length = 187

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 8/186 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
             F + F    I S  +VV+  NP+ S+F L+  F+N+A  FLLLG +F+A++ L++YVG
Sbjct: 2   EFFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--------VCASNFMVFS 116
           A+ + FLF+IM+L++       +++        IG +             +   +F + +
Sbjct: 62  AIAILFLFVIMLLNLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLFLGSFQIEN 121

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
            +      +   +N+E +G++LY      L ++ FILL++MIG IVL        K+QD+
Sbjct: 122 WDLSFPWFLISYHNIEALGQILYVSGFCLLLLASFILLVAMIGVIVLTQETEFLSKKQDL 181

Query: 177 SKQLES 182
             Q+  
Sbjct: 182 FFQINR 187


>gi|169634173|ref|YP_001707909.1| NADH dehydrogenase I chain J [Acinetobacter baumannii SDF]
 gi|184157037|ref|YP_001845376.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
           baumannii ACICU]
 gi|239501286|ref|ZP_04660596.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
           baumannii AB900]
 gi|260551025|ref|ZP_05825230.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter sp.
           RUH2624]
 gi|260555658|ref|ZP_05827878.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter baumannii
           ATCC 19606]
 gi|262280138|ref|ZP_06057923.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter
           calcoaceticus RUH2202]
 gi|299771411|ref|YP_003733437.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
           sp. DR1]
 gi|332872612|ref|ZP_08440580.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
           6014059]
 gi|169152965|emb|CAP02011.1| NADH dehydrogenase I chain J [Acinetobacter baumannii]
 gi|183208631|gb|ACC56029.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
           baumannii ACICU]
 gi|193076542|gb|ABO11200.2| NADH dehydrogenase I chain J [Acinetobacter baumannii ATCC 17978]
 gi|260405973|gb|EEW99460.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter sp.
           RUH2624]
 gi|260410569|gb|EEX03867.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter baumannii
           ATCC 19606]
 gi|262260489|gb|EEY79222.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter
           calcoaceticus RUH2202]
 gi|298701499|gb|ADI92064.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
           sp. DR1]
 gi|332739141|gb|EGJ70000.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
           6014059]
          Length = 173

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5   FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVF 126
           V F+F++MML++     E  +K     ++    L + L+     +M+      +S  L  
Sbjct: 65  VLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGA 124

Query: 127 KGNNVENIGKVLYTQYAYPLE 147
           +    + +G+ L+T Y   +E
Sbjct: 125 QVIGPKVVGQALFTHYLLLVE 145


>gi|141061|sp|P03883|YMCC_EMENI RecName: Full=Uncharacterized 25.4 kDa protein in COX3 5'region;
           AltName: Full=URF-C
 gi|12706|emb|CAA30030.1| unnamed protein product [Emericella nidulans]
 gi|472821|gb|AAA99206.1| unknown protein [Emericella nidulans]
          Length = 228

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 35/197 (17%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  +F  ++I      +  RNP+ SV  LI  FVN AG+ +L G  ++ +  ++VYVGAV
Sbjct: 32  FLDIFYIISITFGVFTIISRNPVVSVLFLIGLFVNIAGILILAGINYLGLSYILVYVGAV 91

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL--------------------- 105
            + FLFI+M+++I I             +    +L   +                     
Sbjct: 92  SILFLFILMLINIRISELLSETNNDIPLAVLTVLLFYYIIGQVLPCNLTDKTIISSLSNR 151

Query: 106 --------------IVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGF 151
                         IV  +  + + +       + +   +  IG ++YT Y+  L IS  
Sbjct: 152 FTGIYNIDISNQSSIVGINQEIGYVSSKGWDNTLVEFTQISGIGNIMYTNYSIWLIISSV 211

Query: 152 ILLLSMIGAIVLMLRHR 168
           ILLL M+GAIV+ ++ +
Sbjct: 212 ILLLGMVGAIVITIKQK 228


>gi|324309718|gb|ADY18499.1| NADH dehydrogenase subunit 6 [Phaeodactylum tricornutum]
          Length = 200

 Score = 98.6 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 11/196 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV  ++ FY FS   +IS+ +VV  ++PI+S+  L+ +F+ ++ +  LL  EF+A++ ++
Sbjct: 1   MVGANVLFYFFSIFLVISAAIVVFSQHPIFSLLFLVLSFLTSSFILFLLECEFLALLFVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV----------CAS 110
           VYVGA+ V FLF IMML+  +        +      F GI +   +             S
Sbjct: 61  VYVGAIAVLFLFAIMMLEFKLHNLAKTLTKYIPAGIFFGIFSFFPLFQQVSNQFRTNFHS 120

Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRR 169
           +   F+       L+    +V   G++LY+ +      +G ILL+ +IG + L    + +
Sbjct: 121 DSFYFNKYTNWLDLIDATTDVVVYGQILYSYFVLQFLFAGLILLVVLIGVVYLTNNWNNQ 180

Query: 170 DIKRQDISKQLESNPD 185
            +  Q I KQL     
Sbjct: 181 KVTDQAIFKQLSRTFK 196


>gi|325067547|ref|ZP_08126220.1| NADH:ubiquinone oxidoreductase subunit J [Actinomyces oris K20]
          Length = 281

 Score = 98.2 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 81/171 (47%), Gaps = 4/171 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +++ F + + + +     V+T +  + +  ++I   ++ A L+++  + F+ +  +VVY 
Sbjct: 27  EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 86

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV+   LF+IM++ +  +  EP    G +    + IL    +  A   +V+ +      
Sbjct: 87  GAVMTLVLFVIMLVGVGGD--EPVGAAGTVMRRPVLILLGLGLAGALTAVVWRSTLPTPA 144

Query: 124 LVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            +  G       +   LY  +   +E++  +L+++ +GA+ L  R R   +
Sbjct: 145 GLKDGAKAAPDLLAVTLYHDHVVTMELTAILLIVAAVGALTLTHRQRIRAR 195


>gi|239907424|ref|YP_002954165.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio
           magneticus RS-1]
 gi|239797290|dbj|BAH76279.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio
           magneticus RS-1]
          Length = 172

 Score = 98.2 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 7/174 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    F  +S +A+    L V+  + + ++  L+ +    AGL+LLL A+FVA++ ++
Sbjct: 4   MYLGQTAFAFYSLIALAGGVLAVSAASLVRAMLGLVVSLFGVAGLYLLLLADFVALMQIL 63

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFMVFSAE 118
           +YVGAV V   F IM+     +  E +    RG L   F  +L A ++V        +  
Sbjct: 64  IYVGAVTVLIFFAIMLTRASADGGEGQGPGLRGSLRGVFGALLPAGILVPC-----LAVY 118

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
           G       K  +   +G  L   Y    E+   +LL +M GA++L    R   K
Sbjct: 119 GVAGFPTPKNVSPAELGAGLLGPYTMAFELISVVLLAAMAGAVLLAFEKRGAAK 172


>gi|197131410|gb|ACH47223.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium carolinianum]
          Length = 176

 Score = 98.2 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            N IYS FSL   F+  +  ++L  + FVA   L++YVGA+ +  +F +M ++      +
Sbjct: 30  TNLIYSAFSLGLVFICISLFYILANSHFVAAAQLLIYVGAINILIIFAVMFINGSEYSKD 89

Query: 86  PRKKRGFLG--SFFIGILAAELI--VCASNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139
                   G  S     L   LI  +  +++         +++V K   +N + IG  L 
Sbjct: 90  LNLGTVGDGATSLVCTTLFLSLISNILDTSWYGIIWTTRATQIVEKDLISNSQQIGIRLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IGAI +  +
Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176


>gi|289606445|emb|CBI61288.1| putative NADH dehydrogenase subunit 6 [Sordaria macrospora]
          Length = 238

 Score = 98.2 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 45/204 (22%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S +AI     V+  +NPI SV  LI  F + +   +LLG  F+ +  L+VY+GA+ + 
Sbjct: 17  IISILAIFCGISVIVNKNPIISVLFLIGLFASVSSYLILLGLSFIGLAYLIVYIGAISIL 76

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112
           FLFI+M+++I I   +         +  +GI  +  +     +                 
Sbjct: 77  FLFILMLINIRISELQSNTNNSIPLTIILGISLSYSLFQLLPYDIAILSNFSSNINNNLY 136

Query: 113 ----------------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAY 144
                                       ++F         + + N++  IG V+Y+ Y+ 
Sbjct: 137 NLSMNKQNNGNLELIPLPQFHCSLKNNDLLFVTSKIWDGNLAESNHITTIGNVMYSNYSI 196

Query: 145 PLEISGFILLLSMIGAIVLMLRHR 168
            L ++ FILLL+M+G+IV++++  
Sbjct: 197 WLFLASFILLLAMVGSIVIIMKSN 220


>gi|304311503|ref|YP_003811101.1| NADH dehydrogenase, chain J [gamma proteobacterium HdN1]
 gi|301797236|emb|CBL45456.1| NADH dehydrogenase, chain J [gamma proteobacterium HdN1]
          Length = 153

 Score = 98.2 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 77/146 (52%), Gaps = 3/146 (2%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           ++  RNP++ +  +I + +  A +F  +GA F A + ++VY GA++V F+F++MML++  
Sbjct: 3   MLFSRNPVHGLLYMIVSLLAVAMVFFAVGAPFAAALEMIVYAGAIMVLFVFVVMMLNLGG 62

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141
           EV    +      ++ +  + + +++      ++ +   ++         + +G +L+  
Sbjct: 63  EVELLERVWLQPRTWVLPAVLSAVVLVQLVSFLWDSAPSIAGQEVSP---KQVGILLFGP 119

Query: 142 YAYPLEISGFILLLSMIGAIVLMLRH 167
           Y   +E++  ILL +++ A+ L  R 
Sbjct: 120 YLLAVELASMILLGALVVALHLGRRE 145


>gi|215484511|ref|YP_002326746.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
           AB307-0294]
 gi|213988115|gb|ACJ58414.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
           AB307-0294]
          Length = 172

 Score = 98.2 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 4   FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 63

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVF 126
           V F+F++MML++     E  +K     ++    L + L+     +M+      +S  L  
Sbjct: 64  VLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGA 123

Query: 127 KGNNVENIGKVLYTQYAYPLE 147
           +    + +G+ L+T Y   +E
Sbjct: 124 RVIGPKVVGQALFTHYLLLVE 144


>gi|169797050|ref|YP_001714843.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AYE]
 gi|213156544|ref|YP_002318205.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB0057]
 gi|301510621|ref|ZP_07235858.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB058]
 gi|301595906|ref|ZP_07240914.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB059]
 gi|332852139|ref|ZP_08433966.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
           6013150]
 gi|332867538|ref|ZP_08437691.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
           6013113]
 gi|169149977|emb|CAM87871.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AYE]
 gi|213055704|gb|ACJ40606.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB0057]
 gi|332729511|gb|EGJ60850.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
           6013150]
 gi|332733955|gb|EGJ65100.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii
           6013113]
          Length = 173

 Score = 97.8 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++
Sbjct: 5   FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVF 126
           V F+F++MML++     E  +K     ++    L + L+     +M+      +S  L  
Sbjct: 65  VLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGA 124

Query: 127 KGNNVENIGKVLYTQYAYPLE 147
           +    + +G+ L+T Y   +E
Sbjct: 125 RVIGPKVVGQALFTHYLLLVE 145


>gi|49147174|ref|YP_025767.1| NADH dehydrogenase subunit 6 [Pseudendoclonium akinetum]
 gi|33439189|gb|AAQ18726.1| NADH dehydrogenase subunit 6 [Pseudendoclonium akinetum]
          Length = 203

 Score = 97.8 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 15/197 (7%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +F  + I S+  VV   NP+Y+V  LI AF NA+ L LL G +++A + +V+YVGA 
Sbjct: 3   LFIIFCALLIASALFVVQCNNPVYAVLFLILAFFNASALTLLAGHDYLAALLIVLYVGAT 62

Query: 67  IVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNF------------- 112
             FFLF IM+L+I I E++E R K   + +    ILA +L    ++F             
Sbjct: 63  CTFFLFAIMILNIQIAEISEKRLKLAPISAIIGIILALQLETIVASFESPIVMDYLPLIS 122

Query: 113 -MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
            +  S    ++ L+     +  +G +LYT YA  L ++  ILL +MIG+I L L      
Sbjct: 123 SIDSSGPEGVALLIDTSTQIYGLGAILYTHYASFLILASLILLSAMIGSISLTLSKGTGN 182

Query: 172 KRQDISKQLESNPDNSI 188
            RQ + +Q   +   ++
Sbjct: 183 LRQQVFQQNIRDFKQTV 199


>gi|15597841|ref|NP_251335.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PAO1]
 gi|107102165|ref|ZP_01366083.1| hypothetical protein PaerPA_01003215 [Pseudomonas aeruginosa PACS2]
 gi|116050632|ref|YP_790549.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152984819|ref|YP_001347925.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PA7]
 gi|218891194|ref|YP_002440060.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa LESB58]
 gi|254235627|ref|ZP_04928950.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa C3719]
 gi|254241075|ref|ZP_04934397.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 2192]
 gi|313107684|ref|ZP_07793866.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 39016]
 gi|81622298|sp|Q9I0J3|NUOJ_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|9948714|gb|AAG06033.1|AE004693_4 NADH dehydrogenase I chain J [Pseudomonas aeruginosa PAO1]
 gi|115585853|gb|ABJ11868.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167558|gb|EAZ53069.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa C3719]
 gi|126194453|gb|EAZ58516.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 2192]
 gi|150959977|gb|ABR82002.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa PA7]
 gi|218771419|emb|CAW27186.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa LESB58]
 gi|310880368|gb|EFQ38962.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 39016]
          Length = 166

 Score = 97.8 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 73/143 (51%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + +A++++  V+T  NP++++  LI + +  +  F  LGA F   + ++VY G
Sbjct: 2   EFAFYFAAGVAVLATLRVITNSNPVHALLYLIISLLAISMTFFSLGAPFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E   ++      ++G  A  L++     +V +     + +
Sbjct: 62  AIMVLFVFVVMMLNLGPAVVEQE-RKWLTPGIWVGPSALALVLLVELLVVLARTPSGAGI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  LY  Y   +E
Sbjct: 121 GHTTVDAKAVGISLYGPYLLVVE 143


>gi|296388894|ref|ZP_06878369.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PAb1]
          Length = 166

 Score = 97.4 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 73/143 (51%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + +A++++  V+T  NP++++  LI + +  +  F  LGA F   + ++VY G
Sbjct: 2   EFAFYFAAGVAVLATLRVITNSNPVHALLYLIISLLAISMTFFSLGAPFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E   ++      ++G  A  L++     +V +     + +
Sbjct: 62  AIMVLFVFVVMMLNLGPAVVEQE-RKWLTPGIWVGPSALALVLLVELLVVLARTPSGAGI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  LY  Y   +E
Sbjct: 121 GHTTIDAKAVGISLYGPYLLVVE 143


>gi|302521255|ref|ZP_07273597.1| NADH dehydrogenase subunit I J [Streptomyces sp. SPB78]
 gi|302430150|gb|EFL01966.1| NADH dehydrogenase subunit I J [Streptomyces sp. SPB78]
          Length = 263

 Score = 97.4 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F LF  +   ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG
Sbjct: 21  EIAFVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 80

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  ++    R    +  + +LAA  +V        +    L   
Sbjct: 81  SVVVLLLFGLMLTRAPIGRSDDADSRNRPLAAAVALLAAAGLVWVVTDAFRTTYIHLDGA 140

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
             +G      G  L+  +  P E
Sbjct: 141 HPQGTTAVT-GAFLFRHWVLPFE 162


>gi|126165905|ref|YP_209564.2| NADH dehydrogenase subunit 6 [Huperzia lucidula]
          Length = 196

 Score = 97.4 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 8/156 (5%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            I+ S  VV   N +YS F L +  V  + L++LL A+FVA + +++YVG + V  +F +
Sbjct: 19  VILGSLGVVLFTNIVYSAFLLGWVPVCISFLYILLNADFVAAVQILIYVGTINVLIVFAV 78

Query: 75  MMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           M+++       +               S F+ I+AA L    S   +     ++      
Sbjct: 79  MLINKPQYFRFLKYWTVGDGTALALCTSPFLSIIAAILSTPWSKISLIVLSNKIVEEPLT 138

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            +NV+ IG    T    P E+   ILL++ +GAI +
Sbjct: 139 -DNVQRIGFHSLTDSPLPFELLSIILLVAPVGAITM 173


>gi|309322198|ref|YP_003934113.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum]
 gi|197131414|gb|ACH47225.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum]
 gi|300069291|gb|ADJ66412.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum]
          Length = 176

 Score = 97.4 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            N IYS FSL   F+  +  ++L  + FVA   L++YVGA+ +  LF +M ++      +
Sbjct: 30  TNLIYSAFSLGLVFICISLFYILANSHFVAAAQLLIYVGAINILILFAVMFINGSEYSKD 89

Query: 86  PRK--KRGFLGSFFIGILAAELI--VCASNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139
                 R    S     L   LI  +  +++         +++V K   +N + IG  L 
Sbjct: 90  LNLGIVRDGATSLVCTTLFLSLISNILDTSWYGIIWTTRATQIVEKDLISNSQQIGIRLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+++IG+I +  +
Sbjct: 150 TDFFLPFELISIILLVALIGSIAVARQ 176


>gi|187764076|ref|YP_001876525.1| NADH dehydrogenase subunit 6 [Dictyostelium fasciculatum]
 gi|160688784|gb|ABX45199.1| NADH dehydrogenase subunit 6 [Dictyostelium fasciculatum]
          Length = 241

 Score = 97.4 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 43/224 (19%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ +   +    A++  + +V   NPIYSV +LI  FV  + + +LL  EF+A I ++
Sbjct: 1   MNVELMIMNIIIVGALVCLYNIVKNINPIYSVLNLIVMFVCYSSMLILLDQEFLACIFIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEG 119
           V VGAV V FLFIIMM++I +   +   K+      F+G+ +   L +  S +M+   E 
Sbjct: 61  VNVGAVAVLFLFIIMMINITMVEIKENMKKYLPYITFMGLNIFMFLFIIGSRYMLTVPEN 120

Query: 120 ------------------------------------ELSRLVFKGNNVENIG-KVLYTQY 142
                                                +  L  K  +++NIG  +LY+  
Sbjct: 121 MTEHVYEQFFTQLAKDNELSLGNVMKESYLININYVNIYELFIKTTDIKNIGANILYSSN 180

Query: 143 AYPLEISGFILLLSMIGAIVLMLR-----HRRDIKRQDISKQLE 181
           +    ++  +LL++M+G I L          +  K Q++  Q+ 
Sbjct: 181 SLWFVLACLMLLIAMVGVINLTDEFLNSTRFKGNKSQNLFHQIS 224


>gi|71057052|emb|CAJ18331.1| NADH dehydrogenase subunit 6 [Secale cereale]
          Length = 220

 Score = 97.4 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 11/122 (9%)

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL----------VFKGNNV 131
           E+ E   +   +      I   E+     N  +       +            V    N+
Sbjct: 4   EIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVYAGKVRSWTNL 63

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMV 191
           E +G +LYT Y+    +S  ILL++MIGAIVL +     +KRQD+ ++   +   +I M 
Sbjct: 64  ETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHGTTKVKRQDVFRRNALDSRRTI-MR 122

Query: 192 KV 193
            +
Sbjct: 123 SM 124


>gi|322422447|ref|YP_004221873.1| NADH dehydrogenase subunit 6 [Penicillium digitatum]
 gi|316891701|gb|ADU57309.1| NADH dehydrogenase subunit 6 [Penicillium digitatum]
          Length = 216

 Score = 97.0 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 36/195 (18%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   ++I+   L ++ RNP+ SV  LI  FVN AGL +L+G  F+ +  ++VYVGAV + 
Sbjct: 22  IIYLVSILLGILTISSRNPVVSVLFLIGLFVNVAGLLILVGYNFLGLAYILVYVGAVSIL 81

Query: 70  FLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAEL----------------------- 105
           FLFI+M+++I + E+         L S  I I    +                       
Sbjct: 82  FLFILMLINIRVSELFNDTNNDLPLASLTIIIFYYIMAQVLPLNFTENSIVCYLSNSYSD 141

Query: 106 ------------IVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                       IV     + +++       + +  +V +IG ++YT Y+  L ++  IL
Sbjct: 142 IYNVQLDNELFNIVDLKQQISYASSKGWDNSLIEPTHVASIGNIMYTSYSMWLIVTSIIL 201

Query: 154 LLSMIGAIVLMLRHR 168
           LL M+GAIV+ ++ +
Sbjct: 202 LLGMVGAIVITIKQK 216


>gi|318077268|ref|ZP_07984600.1| NADH dehydrogenase I chain J [Streptomyces sp. SA3_actF]
          Length = 267

 Score = 97.0 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F LF  +   ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG
Sbjct: 25  EIAFVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 84

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  ++    R    +  + +LAA  +V        +    L   
Sbjct: 85  SVVVLLLFGLMLTRAPIGRSDDADSRNRPLAAAVALLAAAGLVWVVTDAFRTTYIHLDGA 144

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +G      G  L+  +  P E    +LL +++GAIVL  R 
Sbjct: 145 HPQGTTAVT-GAFLFRHWVLPFEALSVLLLAALVGAIVLSRRR 186


>gi|74325170|ref|YP_316590.1| NADH dehydrogenase subunit 6 [Thalassiosira pseudonana]
 gi|74100236|gb|AAZ99397.1| NADH dehydrogenase subunit 6 [Thalassiosira pseudonana]
          Length = 201

 Score = 97.0 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 12/198 (6%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +LFFY FSF+ I SS + V  +N IYSV  L+ +FV+++ +  LL  E+V++I +++YVG
Sbjct: 4   NLFFYFFSFVLITSSLMTVFSQNSIYSVLFLVLSFVSSSSILFLLECEYVSLIFIIIYVG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEG--- 119
           A+ V FLF++MMLDI          + F    FIGI      L+V  S F   +      
Sbjct: 64  AIAVLFLFVVMMLDIKTISLVKDSLKYFPFGSFIGIAFLIEILLVVPSTFEAINPYNISF 123

Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML-RHRRDIK 172
                 +    +     + ++G +LYT Y     +SG ILLL+ IG + L+L R  +  K
Sbjct: 124 LCNFHLDWFNKLDYFTEIMSVGHLLYTDYLIQFLLSGNILLLATIGPVTLVLIRSIKTTK 183

Query: 173 RQDISKQLESNPDNSIVM 190
           +Q   KQL    ++ + +
Sbjct: 184 KQITFKQLSRTYNSVLYI 201


>gi|296268313|ref|YP_003650945.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Thermobispora bispora DSM 43833]
 gi|296091100|gb|ADG87052.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobispora
           bispora DSM 43833]
          Length = 176

 Score = 97.0 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 3/161 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   +A+ S  LVVT +  +++   L+  F   AG +L+L AEFVA + +++YVG
Sbjct: 12  EIVFLLLGLVALGSGVLVVTTKRLVHAALWLVVCFGALAGCYLVLTAEFVAWVQVLIYVG 71

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV+V  LF IM+       +E         +  + +  A ++V     ++       + L
Sbjct: 72  AVVVLLLFGIMLTRAPTGRSEELDSGNRWAAALVALATAGVLVTV---VISGFRDAYAPL 128

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                +   IG  ++  +  P E+   +LL ++IGAIV+  
Sbjct: 129 EPGRGSAGEIGAGIFRTWVLPFEVLSLLLLAALIGAIVISR 169


>gi|12408587|ref|NP_074916.1| NADH dehydrogenase subunit 6 [Podospora anserina]
 gi|400641|sp|P15959|NU6M_PODAN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|13304|emb|CAA32648.1| unnamed protein product [Podospora anserina]
 gi|14035|emb|CAA38769.1| NADH-ubiquinone oxidoreductase subunit 6 [Podospora anserina]
          Length = 221

 Score = 97.0 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 36/196 (18%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +FS MA ++   V+  +NPI SV  LI  F   +    ++G  F+ +  ++VY+GAV + 
Sbjct: 25  IFSIMAFLTGIYVILTKNPIVSVLFLILLFGGISSYLNIIGLNFIGLSYIIVYIGAVSIL 84

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--------------- 114
           FLFI+M+++I     +         + FIGI+ +  +     + +               
Sbjct: 85  FLFILMLINIRTSELQSNTSNSIPLTIFIGIIFSNFLFPMLPYDIVMLSNFYNNYFSEDF 144

Query: 115 ---------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                                F         V   N++  IG ++YT Y   L I+ FIL
Sbjct: 145 YTIDVNINDNNLNNLYNNVLYFMTSVIWDGSVIDFNHITAIGNIMYTIYNIWLIIASFIL 204

Query: 154 LLSMIGAIVLMLRHRR 169
           LL+M+G+IV+ ++ R+
Sbjct: 205 LLAMVGSIVITIKQRK 220


>gi|58578649|ref|YP_203369.1| NADH dehydrogenase subunit 6 [Mortierella verticillata]
 gi|57545582|gb|AAW51706.1| NADH dehydrogenase subunit 6 [Mortierella verticillata]
          Length = 200

 Score = 97.0 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 33/199 (16%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++   L +F +++S+ LV+T R+P+ SV  LI  F+N AG  +LLG  F+A+  ++VY
Sbjct: 1   MNNILLDLLTFTSVLSAILVITARSPVISVLFLIAVFINIAGYLILLGVNFIALSYIMVY 60

Query: 63  VGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGILAAELI------------ 106
           +GA+ + FLF+IMML++ +    E+     K   L       L+  ++            
Sbjct: 61  IGAIAILFLFVIMMLNVRLTELHEIGSDYSKNFPLAIVVAASLSYIILSNSLTKSIDQIY 120

Query: 107 -----------------VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
                                N++        + +      ++ IG ++Y+ Y   L + 
Sbjct: 121 LITALFDKLNFLNSGINTTTDNYINIGYNTIYNNIFVNYEQIQAIGNIMYSSYGLYLILC 180

Query: 150 GFILLLSMIGAIVLMLRHR 168
            F+LLL+M+G I++ L  +
Sbjct: 181 SFVLLLAMLGPIIITLDKK 199


>gi|94676511|ref|YP_588817.1| NADH-quinone oxidoreductase, chain J [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219661|gb|ABF13820.1| NADH-quinone oxidoreductase, chain J [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 165

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L  Y F  +AI S+  V+T   P++++  LI   +  AG+F ++GA F   + ++VY G
Sbjct: 2   ELALYFFGLVAIFSALRVITHNKPMHALLYLIITILAIAGVFFVIGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV+V F+F++MM++I         ++  +   +  +    L+         ++   ++  
Sbjct: 62  AVVVLFIFVVMMINIHCSEQINILRQPIISIIYFILPLILLLAILLYIFWSTSNDSINNQ 121

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           +      + +G +L+  Y   ++++  +LL  ++ A  L
Sbjct: 122 LID---TKTVGVLLFGPYILAVDLASMLLLAGLVVAFHL 157


>gi|318056641|ref|ZP_07975364.1| NADH dehydrogenase I chain J [Streptomyces sp. SA3_actG]
          Length = 267

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F LF  +   ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG
Sbjct: 25  EIAFVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 84

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  ++    R    +  + +LAA  +V        +    L   
Sbjct: 85  SVVVLLLFGLMLTRAPIGRSDDADSRNRPLAAAVALLAAAGLVWVVTDAFRTTYIHLDGA 144

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             +G      G  L+  +  P E    +LL +++GAIVL  R 
Sbjct: 145 HPQGTTAVT-GAFLFRHWVLPFEALSVLLLAALVGAIVLSRRR 186


>gi|75286704|sp|Q5SCZ0|NU6C_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|50660038|gb|AAT80760.1| NADH-plastoquinone oxidoreductase subunit 6 [Huperzia lucidula]
          Length = 199

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 8/156 (5%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            I+ S  VV   N +YS F L +  V  + L++LL A+FVA + +++YVG + V  +F +
Sbjct: 22  VILGSLGVVLFTNIVYSAFLLGWVPVCISFLYILLNADFVAAVQILIYVGTINVLIVFAV 81

Query: 75  MMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           M+++       +               S F+ I+AA L    S   +     ++      
Sbjct: 82  MLINKPQYFRFLKYWTVGDGTALALCTSPFLSIIAAILSTPWSKISLIVLSNKIVEEPLT 141

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
            +NV+ IG    T    P E+   ILL++ +GAI +
Sbjct: 142 -DNVQRIGFHSLTDSPLPFELLSIILLVAPVGAITM 176


>gi|303247485|ref|ZP_07333757.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           fructosovorans JJ]
 gi|302491181|gb|EFL51073.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           fructosovorans JJ]
          Length = 171

 Score = 96.6 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 3/169 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    F  ++ + +    L VT  + + ++  L+ A    AGL+LLL A+FVA++ ++
Sbjct: 4   MYLGQFAFAFYTLIVLAGGGLAVTAASLVRAMLGLVVALFGVAGLYLLLLADFVALMQIL 63

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGAV V   F IM+     +  E     G   +  +  + A L+       + +  G 
Sbjct: 64  IYVGAVTVLIFFAIMLTRAAADGGEAE---GPGAAGILRAIPAFLVPAGILVPLLAVYGA 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +     K  + + +G  L   Y    E+   +LL +M GA++L    R 
Sbjct: 121 VGFPTPKNVSPDQLGAGLLGPYTLAFELISVVLLAAMAGAVILAFEKRE 169


>gi|271962240|ref|YP_003336436.1| NADH-ubiquinone oxidoreductase protein, chain J [Streptosporangium
           roseum DSM 43021]
 gi|270505415|gb|ACZ83693.1| putative NADH-ubiquinone oxidoreductase protein, chain J
           [Streptosporangium roseum DSM 43021]
          Length = 178

 Score = 96.6 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 3/146 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
             Q + F L   +A+ S+ LVVT R  +++   L+  F   AG +L+L AEFVA + +++
Sbjct: 11  TGQEIVFLLLGAVAVGSALLVVTTRQLVHAALWLVVCFGALAGGYLVLTAEFVAWVQVLI 70

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA++   LF IM+    I        R    +  +   A          ++       
Sbjct: 71  YVGAIVALLLFGIMLTRAPIGRTADLDSRNRPAAAVV---AIATAAVLVTVVIDGFRTAY 127

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147
           + L   G + + +G  ++  +  P E
Sbjct: 128 APLEPGGGSAKELGSSIFRNWVLPFE 153


>gi|182412301|ref|YP_001817367.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus
           terrae PB90-1]
 gi|177839515|gb|ACB73767.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus
           terrae PB90-1]
          Length = 169

 Score = 96.6 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M S  F +F  +A+I++   V  RN + +    + + +   GLF++L A  +A + L+VY
Sbjct: 1   MASFLFNVFVLLAVIAALGAVLNRNTVNAAMCFMLSLIGVTGLFVMLEAYLLAFVLLLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV   FLFI+M+LD       P   R  LG F   +  A L V               
Sbjct: 61  AGAVAALFLFIVMLLDTHTTKVRP---RRPLGMFATLVSVALLAVGVLTLYQAPGLAAAP 117

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                G +++     L+T Y  P++I GF+LL++M+G IVL  +
Sbjct: 118 VPTAVGASLKVYAYELFTTYLLPVQIVGFLLLIAMLGVIVLSKK 161


>gi|125213990|dbj|BAF46418.1| NADH dehydrogenase subunit 6 [Rhodotorula glutinis]
          Length = 222

 Score = 96.6 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 47/210 (22%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++   L +  AI+S  +V+T +NP+ SV  LI  F+N AG  +LLG  ++ ++ L+VY
Sbjct: 1   MNNVLLDLLALGAILSGIMVITAKNPVISVLFLIAVFLNVAGYLVLLGVAYLGLVYLIVY 60

Query: 63  VGAVIVFFLFIIMMLDID----IEVAEPRKKRGFLGSFFIGILAAELIVC--------AS 110
           VGA+ + FLF+IMML++     +E  +   K   +G+F   +   EL+           S
Sbjct: 61  VGAIAILFLFVIMMLNLRLVELVETGQEYTKSLPMGAFLGSLFFFELLSILPVSYHDGGS 120

Query: 111 NFMVFSAEGELSRLVFKGNN-----------------------------------VENIG 135
             +  S    L+  +   +N                                   +E+IG
Sbjct: 121 LHVSLSIFNWLNTTLLGISNTDTALDSIHHSVGTEGVHAAFNPVVADSTMTTFTQIESIG 180

Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLML 165
             LYT  +  L ++  I LL+M+G IVL +
Sbjct: 181 HGLYTYASLWLVVASVIFLLAMVGPIVLCM 210


>gi|148262405|ref|YP_001229111.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter
           uraniireducens Rf4]
 gi|146395905|gb|ABQ24538.1| NADH dehydrogenase subunit J [Geobacter uraniireducens Rf4]
          Length = 161

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 88/165 (53%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++  FY+ + +A+I++   +T ++ ++++  L+ +F   A +F LLGA  VA+  +++Y
Sbjct: 1   MEATLFYILAAVAVIATGFAITEKHTVHAIVYLVTSFFALAVVFYLLGAPLVAVFEVIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F+IMMLD+      P K        +   L    I+ A+   + +A+ +  
Sbjct: 61  AGAIMVLFMFVIMMLDL----GHPEKVALPGMRDWWPALLLGGIILAAIIALLTAQQQAV 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                   + +  +VL+ +Y   +EI    LL +++GA+ L  R 
Sbjct: 117 IGKLPYVGIRDFSRVLFRKYGIAVEIISMQLLFALVGALYLGRRR 161


>gi|212712284|ref|ZP_03320412.1| hypothetical protein PROVALCAL_03370 [Providencia alcalifaciens DSM
           30120]
 gi|212685030|gb|EEB44558.1| hypothetical protein PROVALCAL_03370 [Providencia alcalifaciens DSM
           30120]
          Length = 181

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +A++++  V+T  NP++++  L+ + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFTFYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  +      ++    + + +++    + + S   +  + 
Sbjct: 62  AIMVLFVFVVMMLNLGRSVQEQERAWLTPKTWIGPAVLSAVLLGILVYGITSLSHQ-DKT 120

Query: 125 VFKGNNVENIGKVLYTQYA 143
                  + +G  L+  Y 
Sbjct: 121 EGAIITAKEVGISLFGPYV 139


>gi|312885981|ref|ZP_07745609.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603]
 gi|311301518|gb|EFQ78559.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603]
          Length = 183

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ + FY+  F+A+ S+ LV   +N + S+F         AGL++   A+FVA+  +V
Sbjct: 1   MNIEQILFYVMGFIALASALLVAASKNLVRSLFLFFVTLFALAGLYVFALADFVAVTQIV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCAS----- 110
           +YVG V+V  LF  M+ + D+     +        G L +  + +L   ++V A      
Sbjct: 61  IYVGGVLVLMLFAFMLSNKDVLNNLQQGNNKFISVGKLPALLVAVLFLIVLVNAIIKAQP 120

Query: 111 -NFMVFSAEGELSRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +     A  +   ++  G+N + NIG  L T+Y  P E+   +L++++IGA  L  + 
Sbjct: 121 DSLPWIKASVQHDNVIKPGDNMLSNIGINLMTRYLLPFEVVSILLMMTLIGAAHLARKE 179


>gi|283852193|ref|ZP_06369466.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           sp. FW1012B]
 gi|283572419|gb|EFC20406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           sp. FW1012B]
          Length = 171

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 3/168 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    F  ++ + +    L V  +  + ++  L+ +    AGL+LLL A+FVA++ ++
Sbjct: 4   MYLGQFAFAFYTLIILAGGLLAVGAQGLVRAMLGLVVSLFGVAGLYLLLLADFVALMQIL 63

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGAV +   F IM+     +  E     G   +  +  + A L+         +  G 
Sbjct: 64  IYVGAVTILMFFAIMLTRASADGGEAE---GPGFAGILRAIPAFLVPAGILVPFLAVHGT 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                 K  + + +G  L   Y  P E+   +LL +M GA++L    R
Sbjct: 121 PGFATPKNVSPDQLGAGLLGPYTLPFELISVVLLAAMAGAVLLAFEKR 168


>gi|320160248|ref|YP_004173472.1| NADH-quinone oxidoreductase subunit J [Anaerolinea thermophila
           UNI-1]
 gi|319994101|dbj|BAJ62872.1| NADH-quinone oxidoreductase chain J [Anaerolinea thermophila UNI-1]
          Length = 179

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F++ +F+A+  +  ++  RN +YS   L+  F   A L+L+LGA F+A+  + VY G
Sbjct: 2   TIVFFVLAFVAVGCAISMLITRNAVYSALFLVLNFATVAILYLILGAPFIALSQITVYAG 61

Query: 65  AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           +VIV FLF++M+L  + +  AEP + + F+      +LA  L    S        G ++ 
Sbjct: 62  SVIVLFLFVVMLLGAERLPGAEPLRWQRFIAMGLGLVLAVNL--GWSVVQRAGDLGVITA 119

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFI 152
                     +G+VL+TQY  P++I  FI
Sbjct: 120 PEKGFGAPVEVGRVLFTQYVLPIQIVAFI 148


>gi|281428836|ref|YP_003355013.1| NADH dehydrogenase subunit 6 [Ircinia strobilina]
 gi|251765336|gb|ACT15488.1| NADH dehydrogenase subunit 6 [Ircinia strobilina]
          Length = 169

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 8/161 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   F YL S   ++S+ +V+  ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VY
Sbjct: 1   MYLFFCYLLSVGIMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFLAFLLLLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF++M+L ++ +  +  K +  +  F    L                +    
Sbjct: 61  VGAIMVLFLFVLMILMLNEDELQGEKSKLVVFVFLFFFLFLFCFKI--------GQVTFP 112

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                   +  +G+ LY +Y        FILLL+MIG + L
Sbjct: 113 NWGANERGIVLLGRGLYIEYGEAFIAGSFILLLAMIGVVEL 153


>gi|156960020|gb|ABU98488.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +   +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L     
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 166 -------RHRRDIKRQDISKQLESN 183
                         +QD+  Q+   
Sbjct: 114 SPFLYNSHSESLRSKQDLFLQISRE 138


>gi|50510208|dbj|BAD31376.1| chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica Group]
          Length = 172

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 10/147 (6%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NP +S FSL    V  +    L  + FVA+  L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPTFSAFSLGLVLVCIS----LFNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 85

Query: 86  PRKK---RGFLGSFFIGILAAELIVCA-SNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139
                   GF     I I  + +     +++         +++V +G  NNV+ IG  L 
Sbjct: 86  KNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLA 145

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL+S+IGAI +  +
Sbjct: 146 TDFYLPFELISIILLVSLIGAITMARQ 172


>gi|297569879|ref|YP_003691223.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925794|gb|ADH86604.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 173

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + F+ F  + I  + +     N I +V  L    V  AG++  L + F+A++ +++Y
Sbjct: 10  LAGVVFFGFILLIIFGALVATNAVNLIRAVCGLALCLVGVAGIYYFLQSPFLALMQVLIY 69

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV V  +F +M+ +        R +R    +      AA L+      +        +
Sbjct: 70  AGAVCVAIVFAVMLAEPQGA---KRLERAHPLAGPGAFAAAALMAWGLAALALRTSWPEA 126

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                   +E++G+ + T +    E+   ILL+++IG++VL  R RR
Sbjct: 127 SSQVNAGALEDVGRAMMTTFVVSFELISLILLVAIIGSLVLARRGRR 173


>gi|218886694|ref|YP_002436015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757648|gb|ACL08547.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 168

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 15/169 (8%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F  +  + ++  F+ V   + + ++  L+   +  AG++LLL A F+A + +++YVGA
Sbjct: 7   LAFAFYFLVIVVGCFMAVGCASLVRALVGLVATLLGVAGMYLLLNAPFMAFMQILIYVGA 66

Query: 66  VIVFFLFIIMMLDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           + V   F +M+   D E  E      PR  +G L +   G L A +++            
Sbjct: 67  ICVLIFFALMLARADAEGDEADPAPAPRTFKGVLAAMLPGTLLAPILML---------HP 117

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             S+++     +  +G+ L   Y  P E+   +LL+SM GA++L+   R
Sbjct: 118 TASKMIPAEVPLAELGRRLMEDYVLPFELISMVLLISMAGAVLLVWERR 166


>gi|156959919|gb|ABU98412.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959924|gb|ABU98416.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959932|gb|ABU98422.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959940|gb|ABU98428.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959944|gb|ABU98431.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959952|gb|ABU98437.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959956|gb|ABU98440.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959964|gb|ABU98446.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959968|gb|ABU98449.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959980|gb|ABU98458.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959988|gb|ABU98464.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959992|gb|ABU98467.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960000|gb|ABU98473.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960004|gb|ABU98476.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960016|gb|ABU98485.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960024|gb|ABU98491.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960028|gb|ABU98494.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960032|gb|ABU98497.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960036|gb|ABU98500.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +   +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L     
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 166 -------RHRRDIKRQDISKQLESN 183
                         +QD+  Q+   
Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138


>gi|261346149|ref|ZP_05973793.1| NADH-quinone oxidoreductase, J subunit [Providencia rustigianii DSM
           4541]
 gi|282565802|gb|EFB71337.1| NADH-quinone oxidoreductase, J subunit [Providencia rustigianii DSM
           4541]
          Length = 180

 Score = 95.5 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +A++++  V+T  NP++++  L+ + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFTFYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  +      ++    L + +++    + + S   +    
Sbjct: 62  AIMVLFVFVVMMLNLGRSVQEQERAWLTPKTWIGPSLLSAVLLGILVYGITSISHQEKTE 121

Query: 125 VFKGNNVENIGKVLYTQYA 143
                  + +G  L+  Y 
Sbjct: 122 GVIIT-AKEVGISLFGPYV 139


>gi|27262370|gb|AAN87466.1| NADH-quinone oxidoreductase chain J [Heliobacillus mobilis]
 gi|111074964|gb|ABH04826.1| NAD(P)H-quinone oxidoreductase subunit 6 [Heliobacillus mobilis]
          Length = 169

 Score = 95.5 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 3/143 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +  FY  + M I+S+  VV +++ ++S   L  +F+  AGL++LL A+F+A + ++VY G
Sbjct: 7   AAAFYGLAGMTILSAAGVVFLKDIVHSALMLALSFIGVAGLYVLLNADFLAAVQILVYGG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV +   F +M+             R  + + F+      +   A     F   G+    
Sbjct: 67  AVAILIAFGVMLTRRRNMKESNPNNRWVIYASFVSAAFFAICGWALIGTDFKPVGQQVNP 126

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                 VE +  +L   Y    E
Sbjct: 127 EAA---VEGLASLLLGDYVVAFE 146


>gi|66046434|ref|YP_236275.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae
           B728a]
 gi|289679208|ref|ZP_06500098.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae
           FF5]
 gi|302185031|ref|ZP_07261704.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae
           642]
 gi|63257141|gb|AAY38237.1| NADH dehydrogenase (quinone) [Pseudomonas syringae pv. syringae
           B728a]
 gi|330900635|gb|EGH32054.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330954555|gb|EGH54815.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae Cit
           7]
 gi|330972915|gb|EGH72981.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           aceris str. M302273PT]
 gi|330981362|gb|EGH79465.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 169

 Score = 95.5 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       +IG +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGALLLAELLYVLFANPTGAGV 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|156959960|gb|ABU98443.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 95.5 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +   +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L     
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGXHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 166 -------RHRRDIKRQDISKQLESN 183
                         +QD+  Q+   
Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138


>gi|261886062|ref|ZP_06010101.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 164

 Score = 95.5 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   F  FS  AI+ S  ++  + PI+   SLI   V+ AGL+LLL A+ + +I +VVY
Sbjct: 1   MELFLFINFSLFAILGSLGLILFKAPIHGALSLIVTLVSIAGLYLLLFAKTLFLIQIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V  +F++M  +I  +    + K       F  I+   +I       ++    + +
Sbjct: 61  AGAIMVLSVFVMMFFNIKSDTLFVKLKPKS----FFVIIPPTVIFAILLDEIWKLPSDFA 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                   ++ +G  L+T +    E    +L  ++IG + +
Sbjct: 117 IAPLDFGEIQPLGFYLFTNWGLSFEAISLLLTAALIGVVAI 157


>gi|320352996|ref|YP_004194335.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
 gi|320121498|gb|ADW17044.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
          Length = 184

 Score = 95.5 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L   + +I + + V  R  + +V  L   F   AG++  L + F+AM+ +++YVGA
Sbjct: 23  IIFLLTVALVVIGALIAVNARRLVRAVAGLAVCFTGLAGVYYFLLSPFLAMMQMLIYVGA 82

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V +   F IMM   + +     K R  L    +    A LI  A   +    + ++    
Sbjct: 83  VSILIAFGIMMATPEEQQTPGMKHRSALAG-PLAFSVAALIFAALTLLGLKTQWQVFPRQ 141

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              + ++ +G  L T +    E+   +LLL++IGA+VL  R R
Sbjct: 142 GSFD-IKAVGMSLLTTHGMVFELISIVLLLAIIGALVLAQRGR 183


>gi|71737794|ref|YP_275287.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71558347|gb|AAZ37558.1| NADH-quinone oxidoreductase, J subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323796|gb|EFW79880.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327935|gb|EFW83940.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881175|gb|EGH15324.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 169

 Score = 95.5 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       +IG +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANPTGAAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|330889652|gb|EGH22313.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 169

 Score = 95.5 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       +IG +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANPTGAAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|28870537|ref|NP_793156.1| NADH dehydrogenase I subunit J [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970027|ref|ZP_03398159.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301381382|ref|ZP_07229800.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062153|ref|ZP_07253694.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato K40]
 gi|302130463|ref|ZP_07256453.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28853785|gb|AAO56851.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925131|gb|EEB58694.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|330875765|gb|EGH09914.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965584|gb|EGH65844.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331017279|gb|EGH97335.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 169

 Score = 95.5 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       +IG +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANPTGAAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|118475160|ref|YP_891370.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414386|gb|ABK82806.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 164

 Score = 95.5 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 4/161 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   F  FS  AI+ S  ++  + PI+   SLI   V+ AGL+LLL A+ + +I +VVY
Sbjct: 1   MELFLFINFSLFAILGSLGLILFKAPIHGALSLIVTLVSIAGLYLLLFAKTLFLIQIVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V  +F++M  +I  +    + K       F  I+   +I       ++    +  
Sbjct: 61  AGAIMVLSVFVMMFFNIKSDTLFVKLKPKS----FFVIIPPTVIFAILLDEIWKLPSDFG 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                   ++ +G  L+T +    E    +L  ++IG + +
Sbjct: 117 IAPLDFGEIKPLGFYLFTNWGLSFEAISLLLTAALIGVVAI 157


>gi|226315024|ref|YP_002774920.1| NADH dehydrogenase subunit J [Brevibacillus brevis NBRC 100599]
 gi|226097974|dbj|BAH46416.1| NADH-quinone oxidoreductase chain J [Brevibacillus brevis NBRC
           100599]
          Length = 169

 Score = 95.1 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 4/148 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ S + I  +  +++    ++ V SL   F++ AGLF+LLGAEFV +  ++
Sbjct: 1   MTGEFVAFFILSLLTIGGAVFMISFTRVVHMVISLGVTFISIAGLFVLLGAEFVGVAQIL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VY GA+ +  LF IM+   D  +    R  +      F+ +L   L     N    +   
Sbjct: 61  VYSGAISILMLFGIMLTKHDANDEGTGRTWKNRFILLFVIVLFGLLFWGVQNTPWPAPPP 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLE 147
                V   NN + IG  ++T++  P E
Sbjct: 121 PADAPV---NNAKEIGIEVFTKFVIPFE 145


>gi|298487556|ref|ZP_07005598.1| NADH-ubiquinone oxidoreductase chain J [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157940|gb|EFH99018.1| NADH-ubiquinone oxidoreductase chain J [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 169

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       +IG +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANQTGAAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 SHTTVDAKAVGISLFGPYLLVVE 143


>gi|257485448|ref|ZP_05639489.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|330987950|gb|EGH86053.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010719|gb|EGH90775.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 169

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       +IG +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQE-RAWLRPGIWIGPVILGTLLLAELLYVLFANPTGAAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|289649283|ref|ZP_06480626.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 169

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFTSGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       +IG +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANQTGAAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|333031509|ref|ZP_08459570.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           coprosuis DSM 18011]
 gi|332742106|gb|EGJ72588.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           coprosuis DSM 18011]
          Length = 171

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 6/171 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           +  +++ F + + + ++ S L VT    + S   L+F  +  AG++  L   F+  + L+
Sbjct: 3   ITFEAVVFAVLALIIVVFSVLTVTTSRILRSATYLLFVLLGTAGIYFQLNYSFLGAVQLM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G + V ++F I++     +    R ++     F++G + A +      F++     +
Sbjct: 63  VYAGGITVLYVFAILLTS--SKGMNDRAEKLPKSKFWVGAITAVVSFLVCAFLILKNVFK 120

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
            +        +  IGK +      QY  P E+ G +LL  +IGAIV+  + 
Sbjct: 121 EAMFNDVEVGMNQIGKTMLGTEKFQYLIPFELMGVLLLACVIGAIVIARKR 171


>gi|258647049|ref|ZP_05734518.1| NADH dehydrogenase I, subunit 6 [Prevotella tannerae ATCC 51259]
 gi|260853164|gb|EEX73033.1| NADH dehydrogenase I, subunit 6 [Prevotella tannerae ATCC 51259]
          Length = 170

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 78/171 (45%), Gaps = 5/171 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M   ++ F + + + + S+F  V  ++ I +   L F  +  AG++ L+G  F+  + ++
Sbjct: 1   MDSHNIMFVVLAVLMVFSAFATVLTKSIIRAATYLFFVLLGTAGMYFLMGYTFLGAVQVM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++     +      K+    S  + ++     + A     F  + +
Sbjct: 61  VYAGGIVVLYVFAILLTKGAKDKLSDNTKQKIFASALLSLVGFGAFIYAFIKAGFIKD-K 119

Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167
           L+       +++ IG  L +     Y  P E+   +LL  ++ A+++  + 
Sbjct: 120 LAAPDESVISMKEIGMNLLSTEANGYLLPFEVVSLLLLACIVAALLIARKR 170


>gi|187736097|ref|YP_001878209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426149|gb|ACD05428.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 236

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 4/116 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FY+F  +A++ S +VV +RNP+ S   +  +F   A + + LGA F+ ++ ++VY G
Sbjct: 7   DILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYAG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           A++V F FIIM+L++  E +   +      S  IGI+ A L +     +++S  G 
Sbjct: 67  AIMVLFAFIIMLLNVKQETSPFSR----PFSVAIGIIIAGLFLGQLIGIIYSLPGA 118


>gi|156959936|gb|ABU98425.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 17/145 (11%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +   +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165
             + +  S++   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L     
Sbjct: 54  FYSLLTNSSKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 166 -------RHRRDIKRQDISKQLESN 183
                         +QD+  Q+   
Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138


>gi|301347607|ref|ZP_07228348.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB056]
          Length = 168

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 1/140 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL + +AI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++V
Sbjct: 1   YLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIMV 60

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVFK 127
            F+F++MML++     E  +K     ++    L + L+     +M+      +S  L  +
Sbjct: 61  LFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGAR 120

Query: 128 GNNVENIGKVLYTQYAYPLE 147
               + +G+ L+T Y   +E
Sbjct: 121 VIGPKVVGQALFTHYLLLVE 140


>gi|156960008|gb|ABU98479.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +   +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L     
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 166 -------RHRRDIKRQDISKQLESN 183
                         +QD+  Q+   
Sbjct: 114 SPFLYNSHGESLRSKQDLXLQISRE 138


>gi|289625434|ref|ZP_06458388.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330866830|gb|EGH01539.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 169

 Score = 94.7 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       +IG +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANQTGAAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|298530614|ref|ZP_07018016.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509988|gb|EFI33892.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 174

 Score = 94.7 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
            + ++  F+ V  ++ + ++  LI      AGLF L+ A F+A++ +++YVGAV V   F
Sbjct: 19  AIIVVGGFMTVLSQSLVRALVGLIMTLFGVAGLFFLMAAPFIALMQILIYVGAVSVLIFF 78

Query: 73  IIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
            IM+ +     +       R ++ +   G++ A ++  A+           S LV +   
Sbjct: 79  AIMLTNAWPGGDETGRSPGRKYVYAGLAGLVPAVMLATAAI-----RSAPPSFLVPEETE 133

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +  +G+     +  P E+   +L ++M GA++L    RR 
Sbjct: 134 ISVLGRFFLEDFILPFELISLLLTIAMAGAVILAFEMRRK 173


>gi|282860767|ref|ZP_06269833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           sp. ACTE]
 gi|282564503|gb|EFB70039.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           sp. ACTE]
          Length = 251

 Score = 94.7 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 2/168 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L     + ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 19  EIAFLLVGIATLGAAVVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 78

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +++V  LF +M+    I  +          +  + + +A  +V        +   +L   
Sbjct: 79  SIVVLLLFGLMLTRAPIGRSPDADSGNRWVALGVAVASAGALVWVVVDAFRATWIDLDGP 138

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                +V   G  L+  +  P E    +LL +++GAIVL  +  +D K
Sbjct: 139 AQGSTDVT--GAFLFRNWVLPFEALSVLLLAALVGAIVLSRKADKDGK 184


>gi|304312248|ref|YP_003811846.1| NADH dehydrogenase I, subunit J [gamma proteobacterium HdN1]
 gi|301797981|emb|CBL46203.1| NADH dehydrogenase I, subunit J [gamma proteobacterium HdN1]
          Length = 175

 Score = 94.7 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   FYL S + + S  +VV   N ++S+  LI + +  A +F  +GA F A + ++VY
Sbjct: 1   MEMFTFYLTSIIILTSILMVVISANAVHSLLYLILSSLAMAVIFFQMGAPFAAALEVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F++MML++     E  +    LG +    L A L++    F++F       
Sbjct: 61  AGAIMVLFVFVVMMLNLGQAAVEEERTLMPLGIWRGPALLAALLLAELAFLLFQQPVASL 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
            +       + +G  L+  Y   +E++  +L+  ++GA  L  
Sbjct: 121 PVAVYA---KQVGITLFGPYLLAVELASILLMAGLVGAYHLGR 160


>gi|237800534|ref|ZP_04588995.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023394|gb|EGI03451.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 169

 Score = 94.7 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       +IG +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANQTGAAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|8954362|ref|NP_059351.1| NADH dehydrogenase subunit 6 [Cyanidioschyzon merolae]
 gi|3927866|dbj|BAA34654.1| NADH-ubiquinone oxidoreductase chain 6 [Cyanidioschyzon merolae
           strain 10D]
          Length = 204

 Score = 94.7 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 113/200 (56%), Gaps = 8/200 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + FY  + + I+SS++V++++N ++S+  L+  F+NAA L ++L  EF+A++ L+
Sbjct: 1   MSSELVLFYCLASIIIVSSYIVISLKNSVFSILFLVLIFLNAAALIMMLETEFLAILFLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-------- 112
           VYVGA+ V FLF+I++L++ +        +  L    +GI+         +         
Sbjct: 61  VYVGAIAVLFLFVIIILNVKLSEFYYSIGQYILIGSILGIIFLVQTFLILDTNIEFHFLD 120

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            + +   E +  V+  +N+E +G  LYT Y Y   ++  ILL+++IGAIVL +  R  +K
Sbjct: 121 NIHNLYPEWNFEVYSQSNIEALGSNLYTNYMYVFILAAIILLIAIIGAIVLTIHQRGYVK 180

Query: 173 RQDISKQLESNPDNSIVMVK 192
           RQ+I  Q+  +  +S+  + 
Sbjct: 181 RQNILNQVSRDFKDSVYYIN 200


>gi|108796794|ref|YP_636372.1| NADH dehydrogenase subunit 6 [Staurastrum punctulatum]
 gi|122211817|sp|Q32S04|NU6C_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|61393562|gb|AAX45703.1| subunit 6 of NADH-plastoquinone oxidoreductase [Staurastrum
           punctulatum]
          Length = 181

 Score = 94.3 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 2/168 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            + S   Y      ++    VV     IYS   L   FV  A L+LLL A+F+A   +++
Sbjct: 9   TINSPILYFLDVGILLGGLGVVFFGKIIYSALFLGVVFVCVALLYLLLNADFLAAAQILI 68

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEG 119
           YVGA+ V  +F IM+++        +K      L  F +  L + LI+   N        
Sbjct: 69  YVGAINVLIVFAIMLINKPETKINKKKITFGDILSGFSVFGLFSFLIIMILNTTWLQPTL 128

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               +     +++ IG  L T    P E+   +LL++++GAI +  + 
Sbjct: 129 VSQEVKNSFQSIDIIGIHLLTDLLLPFELLSILLLVALVGAITIARKE 176


>gi|194333681|ref|YP_002015541.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Prosthecochloris aestuarii DSM 271]
 gi|194311499|gb|ACF45894.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Prosthecochloris aestuarii DSM 271]
          Length = 173

 Score = 94.3 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 5/145 (3%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ FYLF+ + + S+  VV  +N IYS FSL+F F   A L++ L A+F+A+  +VVYVG
Sbjct: 7   TIIFYLFAAITVFSAAFVVFSKNVIYSAFSLLFTFFGVAALYVYLSADFIAVTQIVVYVG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSR 123
            ++V  LF +M  +  +  +     R  + +   GI     +     ++ ++ A    + 
Sbjct: 67  GILVLLLFGVMFTNKIMTTS----LRTEVVNLIPGIAILFAVTGGLLYVFYTRANWYSTG 122

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEI 148
           +  +G+ VE IG    ++Y  P E+
Sbjct: 123 VQLQGSVVERIGLETMSRYVLPFEM 147


>gi|156959928|gb|ABU98419.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 94.3 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +   +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L     
Sbjct: 54  FYSLLTNSXKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 166 -------RHRRDIKRQDISKQLESN 183
                         +QD+  Q+   
Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138


>gi|258514496|ref|YP_003190718.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778201|gb|ACV62095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 169

 Score = 94.3 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 3/167 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           ++    FY+ + + + S+ LVV  +N ++SV  L  +F+  AG +L+L A F+AM+ ++V
Sbjct: 4   IVSIAAFYILAAVTVGSAVLVVAFKNLVHSVLVLAISFLGVAGFYLMLNASFIAMVQILV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GAV +  +F IM+             +    S   G + A LI   +   V + E ++
Sbjct: 64  YAGAVCIMVVFGIMLTQQGGMSGSNGFNKQIFAS---GGVVALLIAVIAYLGVNAGEWQI 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           S      + V NI  ++ ++Y  P E++  +LL+++IGA+VL    +
Sbjct: 121 SAKQVPHDTVGNIAVLMLSKYMIPFEVAALLLLVALIGAVVLAKEVK 167


>gi|237809388|ref|YP_002893828.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tolumonas
           auensis DSM 9187]
 gi|237501649|gb|ACQ94242.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tolumonas
           auensis DSM 9187]
          Length = 175

 Score = 94.3 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 4/139 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FY  S +AI+++  V+T  NP++++  LI + +    +F  LGA FV  + ++VY G
Sbjct: 2   ELAFYGSSVVAILATLGVITGTNPMHALLYLIVSLIAVGMIFFSLGASFVGAMQVIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     + R+    +      IL+A  +      +     G    +
Sbjct: 62  AIMVLFVFVVMMLNLGTAQEQERQWLRPITWIGPLILSAGQMAVFYAAL----HGVPGII 117

Query: 125 VFKGNNVENIGKVLYTQYA 143
             +    + +G  LY  Y 
Sbjct: 118 TGEPITAKQVGIALYGPYV 136


>gi|295837074|ref|ZP_06824007.1| NADH dehydrogenase subunit [Streptomyces sp. SPB74]
 gi|197697181|gb|EDY44114.1| NADH dehydrogenase subunit [Streptomyces sp. SPB74]
          Length = 250

 Score = 94.3 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F LF  +   ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 21  EIAFVLFGLLTFGAALVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 80

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  ++    R    +  + +LAA  +V        +   +L   
Sbjct: 81  SVVVLLLFGLMLTRAPIGRSDEADSRNRPLAATVAVLAAAGLVWVVADAFRTTYLDLDGD 140

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
             +G      G  L+  +  P E
Sbjct: 141 HPQGTTAVT-GAFLFRHWVLPFE 162


>gi|148358102|ref|YP_001249346.1| NADH:ubiquinone oxidoreductase subunit 6 [Gibberella zeae]
 gi|86142501|gb|ABC86616.1| NADH:ubiquinone oxidoreductase subunit 6 [Gibberella zeae]
          Length = 226

 Score = 94.3 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 41/204 (20%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  A++   L++  +NPI SV  LI  F N +   +L+G  F+ +  L+VY+GAV + 
Sbjct: 23  IISITALLCGILIIINKNPIVSVIFLIGLFANISVYLILIGLTFIGLSYLIVYIGAVSIL 82

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112
           FLFI+M+++I     +   +       FI ILA   I     +                 
Sbjct: 83  FLFILMLINIRTSELQSNNRNSVSLGLFITILANFTIFQILPYYMAILNNYSSKLNTILY 142

Query: 113 ------------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
                                   ++F +       + +  +   IG +LYT +   + +
Sbjct: 143 YLPWNKFSDILNYINKNIDITNANIMFVSSNSWDNNMAETGHTATIGHILYTSHNMWIFM 202

Query: 149 SGFILLLSMIGAIVLMLRHRRDIK 172
           + FILLL+M GAI++ +++ + I+
Sbjct: 203 ASFILLLAMTGAIIITIKNEKAIQ 226


>gi|156959976|gb|ABU98455.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959984|gb|ABU98461.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 93.9 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 17/145 (11%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG + + +I ++VYVGA+ + FLF+IM++    +V                 +   +I  
Sbjct: 1   LGLDXIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L     
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 166 -------RHRRDIKRQDISKQLESN 183
                         +QD+  Q+   
Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138


>gi|164421164|ref|YP_001648648.1| NADH dehydrogenase subunit 6 [Hippospongia lachne]
 gi|158939006|gb|ABW83928.1| NADH dehydrogenase subunit 6 [Hippospongia lachne]
          Length = 169

 Score = 93.9 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   F YL S   ++S+ +V+  ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VY
Sbjct: 1   MYLFFCYLLSVGIMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFIAFLLLLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V FLF++M+L ++ +  +  K +  +  F    L                +    
Sbjct: 61  VGAIMVLFLFVLMILMLNEDELQGEKSKLVVFVFLFVFLFLFCFKI--------GQVTFP 112

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                   +  +G+ LY +Y         ILLL+MIG + L
Sbjct: 113 NWGANERGIVLLGRGLYIEYGEGFIAGSLILLLAMIGVVEL 153


>gi|70731264|ref|YP_261005.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf-5]
 gi|68345563|gb|AAY93169.1| NADH-quinone oxidoreductase, J subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 166

 Score = 93.9 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 75/143 (52%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  VVT  NP++++  LI + +  A  F  LGA F   + ++ Y G
Sbjct: 2   EFAFYFASGVAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFSLGAPFAGALEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++    A+  +     G +   ++ A L++    +++FS +   + +
Sbjct: 62  AIMVLFVFVVMMLNLGPAAAQQERIWLTPGIWIGPVILAALLLAELLYVLFSHQ-SGAGI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GQTTVSAKAVGISLFGPYLLVVE 143


>gi|183599628|ref|ZP_02961121.1| hypothetical protein PROSTU_03115 [Providencia stuartii ATCC 25827]
 gi|188021880|gb|EDU59920.1| hypothetical protein PROSTU_03115 [Providencia stuartii ATCC 25827]
          Length = 181

 Score = 93.9 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 71/139 (51%), Gaps = 1/139 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +A++++  V+T  NP++++  L+ + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFTFYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  ++     ++    L + +++    + + S   +   +
Sbjct: 62  AIMVLFVFVVMMLNLGRSVQEQEREWLAPKNWIGPALLSAVLLALLVYGITSLSYQ-DGI 120

Query: 125 VFKGNNVENIGKVLYTQYA 143
                + + +   L+  Y 
Sbjct: 121 TGTVISAKEVAISLFGPYV 139


>gi|281424347|ref|ZP_06255260.1| NADH dehydrogenase I, subunit 6 [Prevotella oris F0302]
 gi|281401616|gb|EFB32447.1| NADH dehydrogenase I, subunit 6 [Prevotella oris F0302]
          Length = 173

 Score = 93.9 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 4/166 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+ + V  +  + S   L+F     AG++ LL   F+    + VY G 
Sbjct: 5   VMFCILAVVILGSAIMCVLTKRIMRSATFLLFVLFGVAGIYFLLDYTFLGAAQISVYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + + ++F I ++          + +G      I +    L+      +  +      +  
Sbjct: 65  ITMMYIFAIQLVSKRTLQGLVERFKGSRVVNGILLSIVGLVTVGLVLIKNNFYNAAMQAT 124

Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
                +E IG  L      QY  P E     LL  +IG I++  + 
Sbjct: 125 DTEVPMEQIGTALLGSDKYQYVLPFEFISLFLLACIIGGIMIARKE 170


>gi|302870007|ref|YP_003838644.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Micromonospora aurantiaca ATCC 27029]
 gi|302572866|gb|ADL49068.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora aurantiaca ATCC 27029]
          Length = 182

 Score = 93.9 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    +       +A+ +  LVV  R+ + +   L+      AG +L+L AE VA + ++
Sbjct: 1   MTGADVLLLALGAVAVGAGALVVATRHLVRAGLWLVVCLGALAGDYLVLTAELVAWVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGAV+V  LF +M+    I  ++   + G+  +         L V   +   +S    
Sbjct: 61  IYVGAVVVLLLFAVMLTRAPIGPSDDLDRPGWAAALVGAGSGLGLAVLLIDAFRWS---- 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
               +      E +G+ L+  +  P E+   +LL +++GAIVL    R DI R+  
Sbjct: 117 -RVDLPVAGTAERLGEQLFRSWVLPFEVLSVLLLAALVGAIVL---SRPDIGRRST 168


>gi|218508902|ref|ZP_03506780.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli Brasil 5]
          Length = 136

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 1/137 (0%)

Query: 33  FSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92
            +L+  F+N + +F+LL A F+A+I + VYVGA++V FLF+IMM+D+   V +     G 
Sbjct: 1   MALMACFLNISAIFVLLEAPFLAVIQIFVYVGAIMVLFLFVIMMIDVREAVLQRFLPGGN 60

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152
           L +  + +L    ++    +    +  E    +  G+ +  +   L+  Y  P E +  I
Sbjct: 61  LPALVLVVLLGVEMLVLVLWSDRFSVIE-PVAMRGGDQIRQLSTTLFADYLLPFEAASVI 119

Query: 153 LLLSMIGAIVLMLRHRR 169
           LL +++GAIVL  + + 
Sbjct: 120 LLAALVGAIVLARKEQE 136


>gi|156959948|gb|ABU98434.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 140

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 17/145 (11%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +   +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
             + +  S +   + ++    N+  IG  LYT Y   + I+  +LL++MIGAI+L  +  
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113

Query: 169 RDI----------KRQDISKQLESN 183
                         +QD+  Q+   
Sbjct: 114 SPFLYNSHGELLRSKQDLFLQISRE 138


>gi|332971770|gb|EGK10718.1| NADH-quinone oxidoreductase subunit J [Desmospora sp. 8437]
          Length = 168

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F++ +  AI  +  ++     ++ V SL F  ++ AG+++LL AEF+A+  ++
Sbjct: 4   MSGEFIAFFVLAVCAIGGAVFMLNFTRVVHMVLSLAFTLLSIAGIYVLLNAEFLAVAQVL 63

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y G+V +  LF IM+     +    R    F     +G L   LI       +++   E
Sbjct: 64  IYTGSVSILMLFGIMLTRHRDQEETVRPWHSFFSFVGVGALFGILI-----HTIYNTPFE 118

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147
            S    K   V  +G++++ QY  P E
Sbjct: 119 ESTASVKEFTVSRLGEIVFKQYVIPFE 145


>gi|315501488|ref|YP_004080375.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. L5]
 gi|315408107|gb|ADU06224.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. L5]
          Length = 182

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    +       +A+ +  LVV  R+ + +   L+      AG +L+L AE VA + ++
Sbjct: 1   MTGADVLLLALGAVAVGAGALVVATRHLVRAGLWLVVCLGALAGDYLVLTAELVAWVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGAV+V  LF +M+    I  ++   + G+  +         L V   +   +S    
Sbjct: 61  IYVGAVVVLLLFAVMLTRAPIGPSDDLDRPGWAAALVGAGSGLGLAVLLIDAFRWS---- 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
               +      E +G+ L+  +  P E+   +LL +++GAIVL    R DI R+  
Sbjct: 117 -RVDLPVAGTAERLGEQLFRSWVLPFEVLSVLLLAALVGAIVL---SRPDIGRRST 168


>gi|268591143|ref|ZP_06125364.1| NADH-quinone oxidoreductase, J subunit [Providencia rettgeri DSM
           1131]
 gi|291313369|gb|EFE53822.1| NADH-quinone oxidoreductase, J subunit [Providencia rettgeri DSM
           1131]
          Length = 180

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  L+ + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFTFYIAGLVAILATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  +      ++    + + +++    + + S   +   +
Sbjct: 62  AIMVLFVFVVMMLNLGRSVQEQERAWLTPKNWIGPAVLSAVLLAILVYGITSLSYQ-EGI 120

Query: 125 VFKGNNVENIGKVLYTQYA 143
                  + +G  L+  Y 
Sbjct: 121 EGTIIGAKEVGISLFGPYV 139


>gi|330810471|ref|YP_004354933.1| NADH-quinone oxidoreductase subunit J [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|19483811|gb|AAL89572.1| NADH dehydrogenase I subunit J [Pseudomonas fluorescens]
 gi|327378579|gb|AEA69929.1| NADH-quinone oxidoreductase subunit J [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 166

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  VVT  NP++++  LI + +  A  F  LGA F   + ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFALGAPFAGALEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       + G +    ++      V  A      +
Sbjct: 62  AIMVLFVFVVMMLNLGPAAVQQE-RSWLKPGIWAGPVILSALLLGELLYVLFAHQSGQAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|77459833|ref|YP_349340.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf0-1]
 gi|77383836|gb|ABA75349.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf0-1]
          Length = 166

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 75/143 (52%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  VVT  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFALGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +  +     G +   ++ A L++    +++F+ +   + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQERTWLKPGIWAGPVILAALLLAELLYVLFAHQSGQA-I 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GQTTVDAKAVGISLFGPYLLVVE 143


>gi|330944408|gb|EGH46423.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 169

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A +S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAFVSTLRVITNTNPVHALLYLIISLIAVAITFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V+  +++       +IG +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNL-GPVSVQQERAWLKPGIWIGPVILGALLLAELLYVLFANPTGAGV 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|7524984|ref|NP_050082.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum]
 gi|6093583|sp|Q37314|NU6M_DICDI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|699594|dbj|BAA03936.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum]
 gi|4958887|dbj|BAA78064.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum]
          Length = 226

 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 32/204 (15%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
            + +++   NPIYS+ +LI  +   A + L +  EF+A I ++V VGA+ V FLFI+MM+
Sbjct: 17  CTLVILRSVNPIYSILNLIVIYGCYASILLTVEMEFLACIYILVNVGAIAVLFLFIVMMI 76

Query: 78  DIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---------------------- 114
           +I+I E+ E  KK        I  +   L +  +N+ +                      
Sbjct: 77  NINIVEIQETMKKYNIYMIVGIIGVVGLLGILITNYQIRIKEEVIADFSMFLINSEVVQL 136

Query: 115 --FSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM------L 165
               +  +   L  +  ++  +G  V+Y  Y+    ++  ILL+ M+G I +        
Sbjct: 137 QATPSYLDFYSLFVETTDIRTMGSNVIYGSYSIWFIMACIILLIGMVGVIYITEDLIIEK 196

Query: 166 RHRRDIKRQDISKQLESNPDNSIV 189
           R   + +RQDI+ Q+      +I 
Sbjct: 197 RTLNERRRQDINSQVLREYKITIR 220


>gi|11466441|ref|NP_038447.1| NADH dehydrogenase subunit 6 [Mesostigma viride]
 gi|14194990|sp|Q9MUL3|NU6C_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|7259584|gb|AAF43885.1|AF166114_97 subunit 6 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
          Length = 189

 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +Q+L   L     II +  VV + N +YS F L    +  AG++LLL AEF+A   +++Y
Sbjct: 7   IQNLSLLLLEIGTIIGALGVVLLPNILYSGFLLGGVLICIAGIYLLLNAEFIAAAQVLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF IM+++  IE   P   +         I  +  I+ ++  M+F  +   +
Sbjct: 67  VGAINVIILFAIMLVN-KIENLNPSNNQMMRNGLSSFICFSFFILLSN--MIFDTQWIDT 123

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEI 148
             V    ++  IG  +++ +  P EI
Sbjct: 124 VGVSTKYSISIIGNHIFSDFLLPFEI 149


>gi|317503347|ref|ZP_07961394.1| NADH dehydrogenase subunit J [Prevotella salivae DSM 15606]
 gi|315665526|gb|EFV05146.1| NADH dehydrogenase subunit J [Prevotella salivae DSM 15606]
          Length = 173

 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 4/166 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+ + VT +  + +   L+      AG++ +L   F+    + VY G 
Sbjct: 5   IMFCILAVIILGSAIVCVTTKRIMRAATFLLCVLFGVAGIYFILDYTFLGAAQISVYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + V ++F+I ++          + +G      + +  A L+      +  +      +  
Sbjct: 65  ITVLYVFVIQLVSKRTLQGLVERFKGKRVFSGVLLCVAGLLTVGLVLIKNNFYNAALQTT 124

Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
                +  IG  L      QY  P E     LL  +IG I++  + 
Sbjct: 125 DTEVPMAQIGTALLGSDKYQYVLPFEFISVFLLACIIGGIMIARKE 170


>gi|156959972|gb|ABU98452.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156959996|gb|ABU98470.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
 gi|156960012|gb|ABU98482.1| NADH dehydrogenase subunit 6 [Carijoa riisei]
          Length = 141

 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 17/145 (11%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG +++ +I ++VYVGA+ + FLF+IM++    +V                 +   +I  
Sbjct: 1   LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165
             + +  S +   + ++    N+  IG  LYT Y   + I+  +L ++MIGAI+L     
Sbjct: 54  FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLXVAMIGAILLAKQPS 113

Query: 166 -------RHRRDIKRQDISKQLESN 183
                         +QD+  Q+   
Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138


>gi|242278967|ref|YP_002991096.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           salexigens DSM 2638]
 gi|242121861|gb|ACS79557.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           salexigens DSM 2638]
          Length = 174

 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 3/172 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +  + F +++ + +    + V   + + ++  LI + +  AG+++L+ A F+A + +++
Sbjct: 4   TLAKIAFVVYTLLILGGGCIAVGAHSLVRAMVGLISSLLGVAGMYMLMAAPFMAFMQILI 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V   F IM+   D    E   +R    +       A + V     + F      
Sbjct: 64  YVGAVCVLIFFAIMLTQADDHGVEAGSRRPGKSALAALTFIAPVFVIGFILIKFQPVSIH 123

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             +      +  IGK L   Y    E+   +LL +M GA++L    +    R
Sbjct: 124 IPVEVP---LIEIGKGLLEDYPVAFELISVVLLAAMAGAVLLAFEQKGKKGR 172


>gi|260887653|ref|ZP_05898916.1| NADH dehydrogenase I, J subunit [Selenomonas sputigena ATCC 35185]
 gi|330838012|ref|YP_004412592.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           sputigena ATCC 35185]
 gi|260862669|gb|EEX77169.1| NADH dehydrogenase I, J subunit [Selenomonas sputigena ATCC 35185]
 gi|329745776|gb|AEB99132.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas
           sputigena ATCC 35185]
          Length = 167

 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 4/167 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +  FYL + + +  +  VV  +  +++   L   F+  A L+  LGA+F+    L++Y
Sbjct: 5   LNTGAFYLLAAVTLAGALGVVLAKKLVHAALLLTVTFIGIACLYFQLGADFLGAAQLMIY 64

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            G V V  +  +M+               +  +     L   ++  A    V+       
Sbjct: 65  AGGVAVLIVLGVMLTRHTPGEETSPDNARWFAAPVAAALFFAVVFSA----VYVTPFAEV 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                GN++E +  ++  +Y    E++  +LL +++GAIVL     +
Sbjct: 121 MEAPAGNSIEKLADLMLGEYVMTFELAAALLLAALVGAIVLAKEEGQ 167


>gi|292492180|ref|YP_003527619.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           halophilus Nc4]
 gi|291580775|gb|ADE15232.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           halophilus Nc4]
          Length = 167

 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FY+ +F+A++S+ +V+T  NP++++  LI + ++ A +F LLGA F A + +++Y G
Sbjct: 2   EITFYIAAFVAVVSTAMVITRLNPVHALLYLIVSLLSVALIFFLLGAPFAAALEVLIYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++  E      +      +      + +++    +++      LS  
Sbjct: 62  AIMVLFVFVVMMLNLGKEAIAQENRWLNPQMWIGPGALSFILLIELIYLLEKESSLLSSA 121

Query: 125 VFKGNNVENIGKVLYTQY 142
                  + +G+ L+  Y
Sbjct: 122 EMVEP--QQVGRALFGPY 137


>gi|198276156|ref|ZP_03208687.1| hypothetical protein BACPLE_02345 [Bacteroides plebeius DSM 17135]
 gi|198270968|gb|EDY95238.1| hypothetical protein BACPLE_02345 [Bacteroides plebeius DSM 17135]
          Length = 171

 Score = 92.8 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 7/172 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +Q + FY+     I  S L VT    + +   L+F  +    ++ +LG  F++ + L+
Sbjct: 3   ISLQEIVFYIVGACIIACSILAVTTGKILRAATYLLFVLLGTGAIYGILGYTFLSAVQLM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   D  +     +   +      ++ A L++       F+    
Sbjct: 63  VYAGGIVVLYVFSILLTQSDKNMKYKINRAKLISVLLTIVIGAALVLFLVMTNGFALNLI 122

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168
              +      VENIG  L      Q+  P E+   +LL  MIGAI++  + +
Sbjct: 123 PQGVELP---VENIGHALIGTGKYQFVLPFEVVSVLLLACMIGAILIARKQK 171


>gi|163751854|ref|ZP_02159069.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Shewanella
           benthica KT99]
 gi|161328270|gb|EDP99432.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Shewanella
           benthica KT99]
          Length = 208

 Score = 92.8 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F + + +AIIS+ L V+  N ++++  L+   +  A +F +LG+ F A + ++VY
Sbjct: 1   MIDIIFCISAAVAIISALLTVSAHNVVHALLYLVTMMLAIALIFFMLGSPFAAALQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119
            GAV+V F+F+ MML          ++          ++ + L+V     +   + G   
Sbjct: 61  AGAVMVLFVFVTMMLHQGERSLAAERQLFNPQVAKGPLILSALLVIELILLSLGSVGLHQ 120

Query: 120 -ELSRLVFKGNNVENIGKVLYTQY 142
             L+  +     V+ +   L+  Y
Sbjct: 121 EILTGSLPVDQTVKQLAIQLFGSY 144


>gi|330958151|gb|EGH58411.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 169

 Score = 92.8 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVITNTNPLHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     +   +       ++G +    ++ A    V  A    + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWLGPVILGALLLAELLYVLFANPTGAAV 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|299140921|ref|ZP_07034059.1| NADH dehydrogenase I, subunit 6 [Prevotella oris C735]
 gi|298577887|gb|EFI49755.1| NADH dehydrogenase I, subunit 6 [Prevotella oris C735]
          Length = 168

 Score = 92.8 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F + + + + S+ + V  +  + S   L+F     AG++ LL   F+    + VY G +
Sbjct: 1   MFCILAVVILGSAIMCVLTKRIMRSATFLLFVLFGVAGIYFLLDYTFLGAAQISVYAGGI 60

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            + ++F I ++       +   +R  +     GIL + + +     ++       + +  
Sbjct: 61  TMMYIFAIQLVSKR--TLQGLVERFKVSRVVNGILLSTVGLVTVGLVLIKNNFYNAAMQA 118

Query: 127 KGNNV--ENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
               V  E IG  L      QY  P E     LL  +IG I++  + 
Sbjct: 119 TDTEVPMEQIGTALLGSDKYQYVLPFEFISLFLLACIIGGIMIARKE 165


>gi|212550779|ref|YP_002309096.1| NADH dehydrogenase I subunit J [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549017|dbj|BAG83685.1| NADH dehydrogenase I subunit J [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 173

 Score = 92.8 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 4/170 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V+  + F      +++ S L V+  + + S   L    +  AG +L L   F+A + + V
Sbjct: 4   VVNLIIFICLGIASLLFSILAVSSNSLLRSATYLFLVLLCTAGFYLFLNYHFLAAVQVSV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y G ++V F+F I + +   EV   +  +    S  + +        A     F    + 
Sbjct: 64  YAGGIVVLFIFAIFLTNDKSEVLIKKWWQRCTMSVLVILGGIATTAFALLKHRFIYINKS 123

Query: 122 SRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
                +  ++  IGK L      QY  P EI   +LL  +IGAI++  + 
Sbjct: 124 MLEGDREIDMHLIGKALMGTGKYQYLLPFEILSLLLLACIIGAILIARKR 173


>gi|58219954|gb|AAW67495.1| NADH dehydrogenase subunit 6 [Fusarium oxysporum]
 gi|60499215|gb|AAX21838.1| NADH dehydrogenase subunit 6 [Fusarium oxysporum]
          Length = 223

 Score = 92.8 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 41/200 (20%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +  A++   L++  +NPI SV  LI  F N +   +L+G  F+ +  L+VY+GAV + 
Sbjct: 23  IINITALLCGILIIINKNPIVSVIFLIGLFANISVYLILIGLTFIGLSYLIVYIGAVSIL 82

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112
           FLFI+M+++I     +   +        I ILA   I     +                 
Sbjct: 83  FLFILMLINIRTSELQSNNRNSVSLGLLITILANFTIFQVLPYYMAILNNYSSKLNTILY 142

Query: 113 ------------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148
                                   ++F +       + +  +   IG +LYT +   + +
Sbjct: 143 YLPWNKFSDILKYINRNLDITNANIMFVSSNSWDNNMAETGHTATIGHILYTSHNMWIFM 202

Query: 149 SGFILLLSMIGAIVLMLRHR 168
           + FILLL+M+GAI++ ++ +
Sbjct: 203 ASFILLLAMVGAIIITIKGK 222


>gi|332881560|ref|ZP_08449209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680558|gb|EGJ53506.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 171

 Score = 92.8 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 5/170 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +  + F + + M  + S L VT    + +  +L+F     AGL+ +LG  ++  + L 
Sbjct: 4   ITLGQVVFGIVALMMAVCSVLAVTSGRILRAATALLFVLFGTAGLYFMLGYTYLGAVQLS 63

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF---FIGILAAELIVCASNFMVFSA 117
           VY G ++V ++F I++   D  + E   +  +  +      G      ++ +  F  FS 
Sbjct: 64  VYAGGIVVLYVFSILLTRSDKNMNERIPRGRWFAAILTVLAGFGLTVFLLSSYGFARFSV 123

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              +     K  N   IG   Y Q+  P E+   +LL  MIGAI++  + 
Sbjct: 124 PPLVELDPVKVGNA-LIGMEKY-QFVLPFEVVSVLLLACMIGAIMIARKR 171


>gi|57505807|ref|ZP_00371732.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
           [Campylobacter upsaliensis RM3195]
 gi|57015837|gb|EAL52626.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
           [Campylobacter upsaliensis RM3195]
          Length = 172

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 2/166 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++ L F +FS + +    + V  +N +YS+ +L    V  +  + +L AEF+  I ++VY
Sbjct: 2   IEQLSFIVFSVLILSFFLVAVLSKNMLYSLSALAGGMVFLSSFYFMLDAEFLGAIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+  + F +M  D   +  E  K +    +  IG+    L     +F + S   +L 
Sbjct: 62  SGAVLGIYSFAMMFFDASKDFKERLKFKKSFFAL-IGLSLVGLFASLMSFKLNSVNVDLP 120

Query: 123 RLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +     ++ + +   ++++Y    E    +LL++++ AIVL  + 
Sbjct: 121 FIDTALFDLNKQLAFAIFSKYLLAFEFVAILLLIALVCAIVLTHKE 166


>gi|308275209|emb|CBX31806.1| hypothetical protein N47_N26310 [uncultured Desulfobacterium sp.]
          Length = 165

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L     +  +FL V  +  ++++  L  A     G++L LG++FVAM+ L++Y
Sbjct: 1   MAQAAFVLMIVFTLAGAFLAVIPKKIVHNILGLALAMFGITGVYLYLGSQFVAMMQLLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ + ++F IM+        E    R            + ++      M+ S + E  
Sbjct: 61  VGAICMTYIFAIMLSPP----LEKELPRRNKLKVITATAVSSIVFIVMVKMILSLKIEPI 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
               +  +++ +G++L T+Y    E+   +L +++IG+I++    R+ 
Sbjct: 117 ADATRDWSIKTLGQLLLTRYFLVFELISLLLAIAIIGSIMVASFVRKR 164


>gi|229591261|ref|YP_002873380.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens SBW25]
 gi|312961694|ref|ZP_07776192.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Pseudomonas
           fluorescens WH6]
 gi|229363127|emb|CAY50148.1| NADH dehydrogenase I chain J [Pseudomonas fluorescens SBW25]
 gi|311283953|gb|EFQ62536.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Pseudomonas
           fluorescens WH6]
          Length = 167

 Score = 92.4 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  V+T  NP++++  LI + +  A  F  LGA F  ++ ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++    +  +++       ++G +    ++      V  A      +
Sbjct: 62  AIMVLFVFVVMMLNL-GPASVAQERVWLKPGIWLGPVVLAALLLGELLYVLFAHQSGQAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143


>gi|104782529|ref|YP_609027.1| NADH dehydrogenase subunit J [Pseudomonas entomophila L48]
 gi|95111516|emb|CAK16236.1| NADH dehydrogenase I chain J [Pseudomonas entomophila L48]
          Length = 166

 Score = 92.4 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 73/143 (51%), Gaps = 1/143 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y G
Sbjct: 2   EFAFYFASGVAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++        +     G +   ++ A L++    +++F      + +
Sbjct: 62  AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILAALLLLELLYVLFVTP-SGAAI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + + +G  L+  Y   +E
Sbjct: 121 SGTTVDAKAVGISLFGPYLLVVE 143


>gi|156598541|gb|ABU85528.1| NADH-plastoquinone oxidoreductase subunit 6 [Passiflora biflora]
          Length = 176

 Score = 92.4 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 10/153 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +            I     VV   NPIYS FSL F  V  +  ++L  + FVA   L++Y
Sbjct: 7   IHDFILVFLELGLIFGGLGVVLFTNPIYSAFSLGFVLVCISLFYILSNSHFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V  LF +M ++              +G+    +++  + V    F+  +    + 
Sbjct: 67  VGAINVLILFTVMFMN--GPEYSKGSNLWAVGNGVTSLVSTSIFVFLITFISDTTWYGII 124

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLE 147
               +         +N E IG  L T +  P E
Sbjct: 125 WTTRENQILEQDLISNGEQIGIHLSTDFFLPFE 157


>gi|164421194|ref|YP_001648691.1| NADH dehydrogenase subunit 6 [Vaceletia sp. GW948]
 gi|158939052|gb|ABW83971.1| NADH dehydrogenase subunit 6 [Vaceletia sp. GW948]
          Length = 171

 Score = 92.0 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 8/159 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L  YL S   ++S+ +V+  ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VYVG
Sbjct: 2   NLICYLLSVGTMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFLAFLLLLVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V FLF++M+L ++ +  +  K +  +  F                     +      
Sbjct: 62  AIMVLFLFVLMILMLNEDEWQGEKSKFVVFVFLFFFFFLFCFKI--------GQVTFPNW 113

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                 +  +G+ LY +Y         ILLL+MIG + L
Sbjct: 114 GVNERGIVLLGRGLYIEYGRGFIAGSLILLLAMIGVVEL 152


>gi|11466464|ref|NP_038167.1| NADH dehydrogenase subunit 6 [Chrysodidymus synuroideus]
 gi|7110461|gb|AAF36933.1|AF222718_7 NADH dehydrogenase subunit 6 [Chrysodidymus synuroideus]
          Length = 184

 Score = 92.0 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
            F+ + I +S  V    NP++S+  L+  F++A+G+    GA+F+ ++ +++YVGA+ + 
Sbjct: 4   FFNLILIFASLFVFLSENPVHSILFLVLVFLSASGICFYFGADFLGLLFVIIYVGAIAIL 63

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
           F+FIIMML+I I+         F+  F   +   +L +  S           +   F   
Sbjct: 64  FIFIIMMLNIKIKNKALNYFYFFV--FIGFLAFLQLYLGLSKCFSNFFFFNSNFFFFDSL 121

Query: 130 NVE-NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           ++E  IG+ LY  + +   ISG ILL++MIGAIVL L +     ++ + +Q    
Sbjct: 122 SIEFFIGQTLYNYFTFCFLISGIILLIAMIGAIVLTLNYTSKHFKKFLFRQQVRT 176


>gi|156598281|gb|ABU85402.1| NADH-plastoquinone oxidoreductase subunit 6 [Ginkgo biloba]
          Length = 176

 Score = 92.0 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI--EV 83
            N IYS  SL    V  + L++LL A+FVA   +++YVGA+ V  +F +M+++       
Sbjct: 30  TNIIYSALSLGSVLVCISLLYILLNADFVAAAQILIYVGAINVLIVFAVMLMNNQKYPNS 89

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASN--FMVFSAEGELSRLVFKG--NNVENIGKVLY 139
           A P      + S     L   LI    N  + V S   EL++ + +   NN++ IG  L 
Sbjct: 90  APPWTVGDGITSVVCMSLFCSLITIILNTSWSVISLTTELNQFLEQDLTNNIQRIGVHLS 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166
           T +  P E+   ILL++++GAI +  R
Sbjct: 150 TDFILPFELISIILLITLVGAITMARR 176


>gi|291303391|ref|YP_003514669.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572611|gb|ADD45576.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Stackebrandtia nassauensis DSM 44728]
          Length = 173

 Score = 92.0 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  +    F  + + ++  VVT  + + +   L+ A    A  FL+L AE VA + ++
Sbjct: 1   MTVTDVLLVAFGLLTLGAAVRVVTTAHLVRAGLWLVVALGGLAACFLVLTAELVAWVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGAV+V  LF +M+    I  +    +  + G+         L V  ++   ++    
Sbjct: 61  IYVGAVVVLLLFAVMLTRAPIGASPEMDRARWPGAIVGAAAGLGLSVLLADAFRWT---S 117

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147
           +     +    + +G  ++  +  P E
Sbjct: 118 IDAQAVEPGTAKRLGTEIFGNWVLPFE 144


>gi|296120539|ref|YP_003628317.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces
           limnophilus DSM 3776]
 gi|296012879|gb|ADG66118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces
           limnophilus DSM 3776]
          Length = 290

 Score = 92.0 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 83/233 (35%), Gaps = 54/233 (23%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    F +F+    + + +V   +N +   F L+ +  +AAGLF LL A+F+A   L+
Sbjct: 1   MTVLQFLFAVFASTTCLGAVMVALTQNIVRMAFWLMVSVASAAGLFFLLHADFLAAAQLL 60

Query: 61  VYVGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------M 113
           VY+G  +V  +F +M+      +   P      L +     L   L+    +        
Sbjct: 61  VYLGGTVVILVFGVMLTAGGRTKSLSPTGGETILAAALALSLIMLLLFTVGSVDWERLNT 120

Query: 114 VFSAEGELSRLVFKGNNVE---------------------------NIG----------- 135
           +  A+  L   V   N+ E                            +G           
Sbjct: 121 LAKADQILPSAVQPENHTEPQLTESSPTGDERSPVLGAGRNGDTGHALGSAMIGFRPQWN 180

Query: 136 ----KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
                VL T Y  P EI    LL+ +IGA  L        KRQ  S +  ++ 
Sbjct: 181 RENQLVLGTGYLLPFEIISVHLLVVLIGAAYLAR-----AKRQLPSSRRSTDA 228


>gi|322506936|gb|ADX02390.1| nuoJ [Acinetobacter baumannii 1656-2]
 gi|323516803|gb|ADX91184.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 163

 Score = 92.0 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           MAI+S+  VVT  NP++++ SLI + +  AG+F+++GA F   + ++VY GA++V F+F+
Sbjct: 1   MAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIMVLFVFV 60

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVFKGNNVE 132
           +MML++     E  +K     ++    L + L+     +M+      +S  L  +    +
Sbjct: 61  VMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGAQVIGPK 120

Query: 133 NIGKVLYTQYAYPLE 147
            +G+ L+T Y   +E
Sbjct: 121 VVGQALFTHYLLLVE 135


>gi|167034695|ref|YP_001669926.1| NADH dehydrogenase subunit J [Pseudomonas putida GB-1]
 gi|166861183|gb|ABY99590.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudomonas
           putida GB-1]
          Length = 166

 Score = 92.0 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           A++V F+F++MML++    +       K G      I        +    F+  S  G  
Sbjct: 62  AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILGTLLLAELLYVLFVTPSGAGIS 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147
              V      + +G  L+  Y   +E
Sbjct: 122 GTTVGP----KEVGISLFGPYLLVVE 143


>gi|320354154|ref|YP_004195493.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
 gi|320122656|gb|ADW18202.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus
           propionicus DSM 2032]
          Length = 158

 Score = 91.6 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 1/154 (0%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           +A++ +  +V  R+P+    S +   ++ AGL+ LL A+ +  + L+VY GA++   +FI
Sbjct: 2   LAVLGAAGLVLFRHPMNGAMSFVVTLISLAGLYALLSAKLIFALQLIVYAGAIMSLIVFI 61

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133
           IM L+I  +   P+++   L      I+   + +     +        + +      V+ 
Sbjct: 62  IMFLNIQPDDL-PKEETKLLYIIGGSIIVLPVGLFLVKIVKSIPMSSAALIGNDFGGVKQ 120

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +G +L+  +  P EI   +LL+S+IGA+VL  + 
Sbjct: 121 VGLLLFKDWLVPFEIVSILLLVSLIGAVVLAGKR 154


>gi|320009162|gb|ADW04012.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 223

 Score = 91.6 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 2/143 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L       ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 19  EIAFLLVGLATFGAAVVTVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVG 78

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +    + AA  +V        +   +L   
Sbjct: 79  SVVVLLLFGLMLTRAPIGRSPDADSGNRWMALGASVPAAGALVWVVVDAFRTTWIDLDGP 138

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + +  G+ L+  +  P E
Sbjct: 139 AQ--GSTKASGEFLFRNWVLPFE 159


>gi|302345404|ref|YP_003813757.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           melaninogenica ATCC 25845]
 gi|302149226|gb|ADK95488.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           melaninogenica ATCC 25845]
          Length = 179

 Score = 91.6 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 7/172 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+   V+ +  + +V +L+F     AGL+ LL   F+    + +Y G 
Sbjct: 5   IMFAVLAVIILASAVFCVSTKRIMRAVTALLFVLFGVAGLYFLLDYTFLGAAQISIYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           + + ++F I ++          +   KR FL +F   +    +I+      V        
Sbjct: 65  ITMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAFIALVGFGTVILVLLKNEVLRHTVVNG 124

Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +     +E IG+ L T     Y  P E     LL  +IG +V++   +++
Sbjct: 125 DSLSNEVTMETIGRNLMTANKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 176


>gi|24213588|ref|NP_711069.1| NADH dehydrogenase (ubiquinone) chain J [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24194380|gb|AAN48087.1| NADH dehydrogenase (ubiquinone) chain J [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 233

 Score = 91.6 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 52/215 (24%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q L F+LF+ + I+SS  V+   NPI +   L+ +F + A ++ ++ A F+A + L+VY 
Sbjct: 8   QLLLFFLFASVMILSSLGVIFHPNPITAAVLLVLSFFSLAAIYAVMNAIFIATMQLLVYA 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122
           GA++V  +F++M+L +  +          +       L   L V     +      E + 
Sbjct: 68  GAIMVLVVFVLMLLSLRDDAPRFFIFEKPIKKLLYLGLVMFLGVLLITAVQDGIPSETTV 127

Query: 123 ---------------------------------------------------RLVFKGNNV 131
                                                              +++    N 
Sbjct: 128 PIGYAQNKDGKFVGYSFQISKNIKQTNTKSTLETPKTTSENQNHVHEKDTDQIILTSGNT 187

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +G  ++ +Y  P E+   +LL +++GA+VL  +
Sbjct: 188 AAVGSAMFLRYLLPFELISILLLAAVLGAVVLGKK 222


>gi|290967673|ref|YP_003495101.1| NADH dehydrogenase subunit 6 [Trametes cingulata]
 gi|289832517|gb|ADD21053.1| NADH dehydrogenase subunit 6 [Trametes cingulata]
          Length = 203

 Score = 91.6 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 94/203 (46%), Gaps = 34/203 (16%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M++    L +F A+ SS LV+T +NP+ +V  LI  FVNAAG  +LLG  F+ +  ++VY
Sbjct: 1   MKNFLIELLAFAALFSSVLVITSKNPVIAVIFLISVFVNAAGYLILLGIGFIGISYIIVY 60

Query: 63  VGAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VGA+ V FLF+IMM++I   DI     +  +    +  IG L    I     F   +   
Sbjct: 61  VGAIAVLFLFVIMMINIKLTDILETGSQYTKNLPLALSIGSLFIYEIYTIIPFSFNNVSN 120

Query: 120 ELSRLVFKGN-------------------------------NVENIGKVLYTQYAYPLEI 148
            +  L+FK N                                +E IG+ LYT  A  L I
Sbjct: 121 TILDLLFKFNGFILNYEISINDWVNNAVNPVIADTALTPFLQIEAIGQGLYTYGASWLII 180

Query: 149 SGFILLLSMIGAIVLMLRHRRDI 171
           +  ILLL+M+  I +    R + 
Sbjct: 181 TSVILLLAMVAPIFISKTRRNNS 203


>gi|300723698|ref|YP_003713005.1| NADH dehydrogenase I subunit J [Xenorhabdus nematophila ATCC 19061]
 gi|297630222|emb|CBJ90873.1| NADH dehydrogenase I chain J [Xenorhabdus nematophila ATCC 19061]
          Length = 175

 Score = 91.6 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFTFYVAGLVAILATLRVITHTNPVHALLYLIISLLALSVVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  +      ++    + + +++    + + +      ++
Sbjct: 62  AIMVLFVFVVMMLNLGKSVVEQERLWLQPRAWIGPSILSIVLLIVLAYAISTLPPV--KI 119

Query: 125 VFKGNNVENIGKVLYTQYA 143
             +  +   +G  L+  Y 
Sbjct: 120 AGEVVSAREVGISLFGPYV 138


>gi|313498023|gb|ADR59389.1| NADH dehydrogenase subunit J [Pseudomonas putida BIRD-1]
          Length = 166

 Score = 91.2 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           A++V F+F++MML++    +       K G      I        +    F+  S  G  
Sbjct: 62  AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILGALLLAELLYVLFVTPSGAGIS 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147
              V      + +G  L+  Y   +E
Sbjct: 122 GTTVGP----KEVGISLFGPYLLVVE 143


>gi|170721049|ref|YP_001748737.1| NADH dehydrogenase subunit J [Pseudomonas putida W619]
 gi|169759052|gb|ACA72368.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudomonas
           putida W619]
          Length = 166

 Score = 91.2 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           A++V F+F++MML++    +       K G      I      L +    F+  S  G  
Sbjct: 62  AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILGTLLLLELLYVLFVTPSGAGIS 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147
              V      + +G  L+  Y   +E
Sbjct: 122 GTTVGP----KEVGISLFGPYLLVVE 143


>gi|239980100|ref|ZP_04702624.1| putative NADH dehydrogenase chain J [Streptomyces albus J1074]
 gi|291451954|ref|ZP_06591344.1| predicted protein [Streptomyces albus J1074]
 gi|291354903|gb|EFE81805.1| predicted protein [Streptomyces albus J1074]
          Length = 216

 Score = 91.2 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   + + ++ L VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 31  EIVFLLVGLVTVGAAVLTVTTRQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVG 90

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + +  A  +V        +   +L + 
Sbjct: 91  SVVVLLLFGLMLTRAPIGRSPDTDSGNRPVALAVALATAATLVWVVVDAFRTTWIDLDQA 150

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           V    + E  G  L++ +  P E    +LL +++GAIVL  R
Sbjct: 151 VQ--GSTEVTGAALFSSWVLPFEALSVLLLAALVGAIVLSRR 190


>gi|290475909|ref|YP_003468804.1| NADH dehydrogenase I subunit J [Xenorhabdus bovienii SS-2004]
 gi|289175237|emb|CBJ82040.1| NADH dehydrogenase I chain J [Xenorhabdus bovienii SS-2004]
          Length = 175

 Score = 91.2 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  N ++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFTFYVAGLVAILATLRVITHTNSVHALLYLITSLLALSVVFFSLGAYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V E  +    L  +    + A +++    F + S     + +
Sbjct: 62  AIMVLFVFVVMMLNLGKSVVEQERAWLQLRVWIGPAILAAVLLIVLIFAISSLP--TAEI 119

Query: 125 VFKGNNVENIGKVLYTQYA 143
             +  + + +G  L+  Y 
Sbjct: 120 SGEVVSAKEVGISLFGPYV 138


>gi|288803380|ref|ZP_06408813.1| NADH dehydrogenase I, subunit 6 [Prevotella melaninogenica D18]
 gi|288334200|gb|EFC72642.1| NADH dehydrogenase I, subunit 6 [Prevotella melaninogenica D18]
          Length = 174

 Score = 91.2 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 7/171 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F + + + + S+   V+ +  + +  +L+F     AGL+ LL   F+    + +Y G +
Sbjct: 1   MFAVLAVIILASAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAAQISIYAGGI 60

Query: 67  IVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
            + ++F I ++          +   KR FL +F   +    +I+      V         
Sbjct: 61  TMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAFIALVGFGTVILVLLKNQVLRHTVVNGD 120

Query: 124 LVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +     +E IG+ L T     Y  P E     LL  +IG +V++   +++
Sbjct: 121 SLSNEVTMETIGRNLMTANKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 171


>gi|300727162|ref|ZP_07060580.1| NADH dehydrogenase I, subunit 6 [Prevotella bryantii B14]
 gi|299775548|gb|EFI72140.1| NADH dehydrogenase I, subunit 6 [Prevotella bryantii B14]
          Length = 173

 Score = 91.2 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+ + V  +  + +   L+F     AG++ LL   F+    L +Y G 
Sbjct: 5   VVFCILAVVILGSAIMCVMTKRIMRAATFLLFVLFGIAGIYFLLDYTFLGAAQLSIYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE--LSR 123
           + + ++F I ++          + +G       GIL A L +     ++   +     ++
Sbjct: 65  ITMMYIFAIQLVSKRTLQGLVEQIKG--SRMINGILVAVLGIATVGVVLLKNKFIDCAAQ 122

Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +  K  +++ IG  L      QY  P E     LL  +IG I++  +  + 
Sbjct: 123 MADKEVSMDVIGNHLLGSEKYQYVLPFEFISVFLLACIIGGIMIARKEDKK 173


>gi|297159544|gb|ADI09256.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces bingchenggensis
           BCW-1]
          Length = 238

 Score = 91.2 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 3/143 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L + + +  + + VT +  +++   L+      A  FLLL AEF+A + +++YVG
Sbjct: 21  EITFLLVAVVTLGGAVVTVTTKQLVHAALWLVVTLGGLAVEFLLLTAEFIAWVQVLIYVG 80

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + + +A  +V        +   +L  +
Sbjct: 81  SVVVLILFGLMLTKAPIGRSPDADSGNRPAALAVAVASAAALVWVVVDAFRATWIDLGEV 140

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + +  G  L+  +  P E
Sbjct: 141 Q---GSTKVTGVSLFRHWVLPFE 160


>gi|45658582|ref|YP_002668.1| NADH dehydrogenase I subunit J [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601826|gb|AAS71305.1| NADH dehydrogenase I J subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 233

 Score = 91.2 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 52/215 (24%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q L F+LF+ + I+SS  V+   NPI +   L+ +F + A ++ ++ A F+A + L+VY 
Sbjct: 8   QLLLFFLFASVMILSSLGVIFHPNPITAAVLLVLSFFSLAAIYAVMNAIFIATMQLLVYA 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122
           GA++V  +F++M+L +  +          +       L   L V     +      E + 
Sbjct: 68  GAIMVLVVFVLMLLSLRDDAPRFFIFEKPIKKLLYLGLVMFLGVLLITAVQDGIPSETTV 127

Query: 123 ---------------------------------------------------RLVFKGNNV 131
                                                              +++    N 
Sbjct: 128 PIGYAQNKDGKFVGYSFQISKNIKQTNTKSTLETPKTTSENQNHVHEKDTDQIILTSGNT 187

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             +G  ++ +Y  P E+   +LL +++GA+VL  +
Sbjct: 188 AAVGSAMFLRYLLPFELISVLLLAAVLGAVVLGKK 222


>gi|319789716|ref|YP_004151349.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio
           ammonificans HB-1]
 gi|317114218|gb|ADU96708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio
           ammonificans HB-1]
          Length = 159

 Score = 90.9 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 7/159 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   F+YLF  +A++ + + VT +N I    +L+  FV   GL+  +GAEF+ ++ ++VY
Sbjct: 1   MAEFFYYLFGVIAVVFAAVAVTAKNVIRGGVALLGTFVALGGLYFSVGAEFIGIVQVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA+IV +LF +M LD+     EP +        F+ +    +IV    +  FS  G + 
Sbjct: 61  GGAIIVLYLFALMTLDLKRMEGEPVRLFSVAAGGFLSLALVAIIV----YGGFSFFGSVH 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
             V   +  + +   L+ ++  P E+   +LL++ IGA+
Sbjct: 117 PAV---STAKGLAGPLFYRFLLPFEVVSVLLLVATIGAV 152


>gi|284009328|emb|CBA76494.1| NADH-quinone oxidoreductase chain J [Arsenophonus nasoniae]
          Length = 177

 Score = 90.9 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 76/143 (53%), Gaps = 2/143 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+   +AI+++  V+T  NP++++  LI + +  A +F  +G+ F   + ++VY G
Sbjct: 2   EFTFYVAGLVAILATLRVITHTNPVHALLYLIVSLLVLAIVFFAVGSYFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++   V +  +      ++    + + +++    + + + +   S++
Sbjct: 62  AIMVLFVFVVMMLNLGKSVVDQERVWLQPKAWIGPAILSAVLLGVIVYAIVAIKH--SQI 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
             +  + + +G  L+  Y   +E
Sbjct: 120 KGEMISAKQVGISLFGPYVLAVE 142


>gi|325277469|ref|ZP_08143075.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas sp. TJI-51]
 gi|324097398|gb|EGB95638.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas sp. TJI-51]
          Length = 166

 Score = 90.9 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           A++V F+F++MML++    +       K G      I        +    F+  S  G  
Sbjct: 62  AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILGALLLAELLYVLFVTPSGAGIS 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147
              V      + +G  L+  Y   +E
Sbjct: 122 GTTVGP----KAVGVSLFGPYLLVVE 143


>gi|26990821|ref|NP_746246.1| NADH dehydrogenase subunit J [Pseudomonas putida KT2440]
 gi|148546976|ref|YP_001267078.1| NADH dehydrogenase subunit J [Pseudomonas putida F1]
 gi|24985828|gb|AAN69710.1|AE016607_4 NADH dehydrogenase I, J subunit [Pseudomonas putida KT2440]
 gi|148511034|gb|ABQ77894.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Pseudomonas
           putida F1]
          Length = 166

 Score = 90.9 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A++S+  VVT  NP++++  LI + ++ A +F  LGA F   + ++ Y G
Sbjct: 2   EFAFYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAG 61

Query: 65  AVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           A++V F+F++MML++    +       K G      I        +    F+  S  G  
Sbjct: 62  AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILGTLLLAELLYVLFVAPSGAGIS 121

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147
              V      + +G  L+  Y   +E
Sbjct: 122 GTTVGP----KAVGISLFGPYLLVVE 143


>gi|239905973|ref|YP_002952712.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio
           magneticus RS-1]
 gi|239795837|dbj|BAH74826.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio
           magneticus RS-1]
          Length = 174

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 6/172 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M      FYLF+ + + ++ L  T RNP+++V   +  F++   +  +LGA   +++T+V
Sbjct: 1   MTPLGALFYLFAALGLGAAVLTATRRNPVHAVCCAVAVFLSVGAMLAVLGAPLPSVLTVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V FLF+IM+L +              G F +    A   + A   ++ +    
Sbjct: 61  VYAGAIMVLFLFVIMLLGLPAGDGTL-----PPGRFLVPATLAAATLVALFALIGADPTA 115

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
            + L         +G +L+ +Y   +E    +L  ++  A++L+ R +   K
Sbjct: 116 KTLLPAAMAGPAAVGTILFDKYWLAVEAVSILLFAAL-AAVMLLGRGKTGRK 166


>gi|226348833|gb|ACO50737.1| NADH dehydrogenase subunit 6 [Micromonas pusilla CCMP1545]
          Length = 263

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/104 (38%), Positives = 62/104 (59%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +F+F+A+++ F V+  +NP+YSV  LI  F N +G+ +LLG +F AM+ LVVYVGA+
Sbjct: 4   LFTIFAFLALVAGFCVIKAKNPVYSVLFLILVFCNVSGILVLLGLDFFAMVFLVVYVGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            V FLF++MML++ +        R        G+L    I+   
Sbjct: 64  AVLFLFVVMMLNVKLAEINDNILRYLPVGGLFGLLFLGQILLVM 107



 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
                 + + V  +G+V+YT Y     ++  ILL++MIGAIVL +     +KRQ++  Q 
Sbjct: 190 WPLFSEEISPVAALGQVVYTYYVVFFLVASLILLVAMIGAIVLTMHKGVFVKRQEVWAQN 249

Query: 181 ESNPDNSIVMVK 192
             +   ++  +K
Sbjct: 250 LVDFSKTVSKIK 261


>gi|149374619|ref|ZP_01892393.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
 gi|149361322|gb|EDM49772.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
          Length = 180

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 70/143 (48%), Gaps = 2/143 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L FY+   +A++++  V+T  +P+++V  LI + +  A +F  LGA F   + ++VY G
Sbjct: 2   ELAFYVCGLVAVLATIGVITGTSPVHAVVYLIVSLIAVALVFFALGAPFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++  +  +    R         +L   L+   +  +     G++  +
Sbjct: 62  AIMVLFVFVVMMLNLRSDAEQEPSWRNPRHWVGPSLLTLLLLGALAVLIGQGGMGQM--I 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
             +      +   L+  +   +E
Sbjct: 120 DGELLTARAVALTLFGPWLIVVE 142


>gi|82702150|ref|YP_411716.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosospira
           multiformis ATCC 25196]
 gi|82410215|gb|ABB74324.1| NADH dehydrogenase subunit J [Nitrosospira multiformis ATCC 25196]
          Length = 188

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 78/148 (52%), Gaps = 9/148 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           FYL   +A+ ++ +VVT  + ++++  LI + +  A +F +LGA F A + +++Y GAV+
Sbjct: 5   FYLSGAVAVAATLMVVTRASAVHALLYLIVSLLAVAIIFFVLGAPFAAALEVIIYAGAVM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML++    A   ++    G +    + + L++    +++     ++ + V+ 
Sbjct: 65  VLFVFVIMMLNLGKAAAVKEREWLSPGMWVGPSILSALLLAELIYILVQNIQDV-QGVYD 123

Query: 128 GNNV--------ENIGKVLYTQYAYPLE 147
           G  +        + IG  L+  Y   +E
Sbjct: 124 GTAISTRAVVDSKEIGIALFGPYLLGVE 151


>gi|297201680|ref|ZP_06919077.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sviceus ATCC 29083]
 gi|197710947|gb|EDY54981.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sviceus ATCC 29083]
          Length = 248

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 2/143 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   +   ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 17  EIAFLLVGLVTFGAAIVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 76

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + + AA  +V        +   +L   
Sbjct: 77  SVVVLLLFGLMLTRAPIGRSPDADSGNRWAALVVALAAAAALVWVVADAFRTTWIDLDGP 136

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + E  G  L+  +  P E
Sbjct: 137 AA--GSTEATGASLFQNWVLPFE 157


>gi|332826696|gb|EGJ99518.1| hypothetical protein HMPREF9455_04114 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 167

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 7/156 (4%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           + S+ + VT +  I S   L+F  +  AGL+LLL   F+  + + VY G V+V F+F I+
Sbjct: 15  VFSTIMAVTTQKIIRSATFLLFVLLGTAGLYLLLDYHFLMAVQIAVYAGGVMVLFIFAIL 74

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135
           +           K       F   + A   +    + + ++     + +      +++IG
Sbjct: 75  LTHEPGVDVRFEKPGRM---FVAAVTALAGLGICGHIIFYNVNKFYTYVTQSELQMQDIG 131

Query: 136 KVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
             +      QY  P E    +LL  +IG I++  + 
Sbjct: 132 MAMMGTDKYQYLLPFEAISVLLLACIIGGIMIARKR 167


>gi|50261311|ref|YP_052920.1| NADH dehydrogenase subunit 6 [Saprolegnia ferax]
 gi|48237624|gb|AAT40673.1| NADH dehydrogenase subunit 6 [Saprolegnia ferax]
          Length = 233

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 54/90 (60%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          +  FF+LFS +A+ S+  V+  +N +YSVF LI  F N  GL L+   EF+A++ +++YV
Sbjct: 7  EVFFFFLFSSIALTSAIFVIYSKNTVYSVFFLILVFTNMTGLLLVAEVEFLAIMLIIIYV 66

Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
          GA+ V FLF++MMLDI              
Sbjct: 67 GAITVLFLFVVMMLDIKKIETNNNNYGYLP 96


>gi|29831429|ref|NP_826063.1| NADH dehydrogenase I chain J [Streptomyces avermitilis MA-4680]
 gi|29608544|dbj|BAC72598.1| putative NADH dehydrogenase I chain J (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 207

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   +   ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG
Sbjct: 26  EIAFLLVGLVTFGAAIVTVTTKQLVHAALWLVATLGGLAVEYLLLTAEFIAWVQVLIYVG 85

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + + +A  +V        +   +L+  
Sbjct: 86  SVVVLLLFGLMLTKAPIGRSPDADSGNRWAALTVAVASAATLVWVVVDAFRTTWLDLNGA 145

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                 V   G  L+  +  P E    +LL +++GAIVL  + + D
Sbjct: 146 AAGSTAVT--GASLFQNWVLPFEALSVLLLAALVGAIVLSRKAKAD 189


>gi|189459780|ref|ZP_03008565.1| hypothetical protein BACCOP_00409 [Bacteroides coprocola DSM 17136]
 gi|189433509|gb|EDV02494.1| hypothetical protein BACCOP_00409 [Bacteroides coprocola DSM 17136]
          Length = 171

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +Q + FY+ +    + S L VT    + +   L+F       ++ +LG  F+  + L+
Sbjct: 3   ITLQEIVFYVVAAAIAVFSVLAVTTGKILRAATYLLFVLFGTGAIYGVLGYTFLGAVQLM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118
           VY G ++V ++F I++   D  +  P  +   +      ++ A L+  +  +N    +  
Sbjct: 63  VYAGGIVVLYVFSILLTQSDKNMKYPINRGKLISVLLTTLIGAALVLFLIFTNGFALNII 122

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
            +   L  +   +  IG   Y Q+  P E+   +LL  MIGAI++  + +
Sbjct: 123 PQGVELPAREIGLALIGTEKY-QFVLPFEVVSILLLACMIGAILIARKQK 171


>gi|330997241|ref|ZP_08321094.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Paraprevotella xylaniphila YIT 11841]
 gi|329571036|gb|EGG52743.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Paraprevotella xylaniphila YIT 11841]
          Length = 171

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 5/170 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +  + F + S M  + S L VT    + +  +L+F     AGL+ +LG  ++  + L 
Sbjct: 4   ITLGQVVFGVVSLMMAVCSVLAVTSGRILRAATALLFVLFGTAGLYFMLGYTYLGAVQLS 63

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSA 117
           VY G ++V ++F I++   D  + E   +  +  +      G      ++ +  F  FS 
Sbjct: 64  VYAGGIVVLYVFSILLTRSDKNMNERIPRGRWFAAMLTVLAGFGLTVFLLSSYGFARFSV 123

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              +     K  N   +G   Y Q+  P E+   +LL  MIGAI++  + 
Sbjct: 124 PPLVELDPVKVGNA-LVGMGKY-QFVLPFEVVSVLLLACMIGAIMIARKR 171


>gi|163744628|ref|ZP_02151988.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Oceanibulbus
           indolifex HEL-45]
 gi|161381446|gb|EDQ05855.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Oceanibulbus
           indolifex HEL-45]
          Length = 279

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+ S +AI S + V  V + I + F+L+ +F+    + LL+ A+++ + T+ + 
Sbjct: 1   MTDIAFYILSAIAIWSGWRVFRVDSMIRATFALMVSFICVGAIALLMSADYIGVATVFMM 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
              ++V  LF++M +     +   +    +  S   GI+A           V + +   +
Sbjct: 61  AVEMMVMGLFMVMFMMNPAGLNPMQMVHQYRLSIGAGIVA----FIGLTVAVLATDLPHN 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            L    + + ++G  L        E +G  LL +M+GA++L  R  R
Sbjct: 117 PLPAGRDTMRDLGINLLGSSMLIFETAGVTLLATMLGAVILSSRRGR 163


>gi|224026047|ref|ZP_03644413.1| hypothetical protein BACCOPRO_02800 [Bacteroides coprophilus DSM
           18228]
 gi|224019283|gb|EEF77281.1| hypothetical protein BACCOPRO_02800 [Bacteroides coprophilus DSM
           18228]
          Length = 171

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 7/172 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +Q + FY+ +    + S L VT    + +   L+F       ++ +LG  F+  + L+
Sbjct: 3   ITLQEIVFYVVAAAIAVCSVLAVTTGKILRAATYLLFVLFGTGAIYGILGYTFLGAVQLM 62

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY G ++V ++F I++   D ++     +   +      ++ A L++       F+    
Sbjct: 63  VYAGGIVVLYVFSILLTQSDKDMKYRMNRAKLISVLLTTLVGAALVLFLVLTNGFALNMI 122

Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168
              +      V  IG  L      Q+  P E+   +LL  MIG I++  + +
Sbjct: 123 PQGVELP---VREIGLSLTGTGKYQFILPFEVVSVLLLACMIGGILIARKDK 171


>gi|304382885|ref|ZP_07365368.1| NADH dehydrogenase I [Prevotella marshii DSM 16973]
 gi|304336070|gb|EFM02317.1| NADH dehydrogenase I [Prevotella marshii DSM 16973]
          Length = 174

 Score = 90.1 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 67/169 (39%), Gaps = 4/169 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + +IS+   V  +  + +   L+F     AG++ LL   F+    L +Y G 
Sbjct: 5   IIFGILAAIILISAVFCVMTKRIMRAATFLLFVLFGIAGIYFLLDYTFLGAAQLSIYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + + ++F I ++            +G      I +  A L+   +  +      +   + 
Sbjct: 65  ITMIYIFAIQLVSKRTLQGLTEHVKGSQLVLGILLSLAGLVTVVAVLLKNEFINKAMEMA 124

Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                ++ IG  L      QY  P E     LL  +IG +++  + + +
Sbjct: 125 DSEVPMKTIGTALMGSEKYQYVLPFEFISIFLLACIIGGLMVSHKKKEE 173


>gi|288926083|ref|ZP_06420011.1| NADH dehydrogenase I, subunit 6 [Prevotella buccae D17]
 gi|315608356|ref|ZP_07883345.1| NADH dehydrogenase I subunit 6 [Prevotella buccae ATCC 33574]
 gi|288337123|gb|EFC75481.1| NADH dehydrogenase I, subunit 6 [Prevotella buccae D17]
 gi|315249986|gb|EFU29986.1| NADH dehydrogenase I subunit 6 [Prevotella buccae ATCC 33574]
          Length = 173

 Score = 90.1 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+ + V  +  + +   L+F     AG++ LL   F+    + VY G 
Sbjct: 5   VMFCILAAVILGSAVMCVMTKRIMRAATFLLFVLFGVAGIYFLLDYTFLGTAQIAVYAGG 64

Query: 66  VIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAEGE 120
           + + ++F I ++       V E  K    LG   + ++    +V       F+ F+A+  
Sbjct: 65  ITMVYIFAIQLVSKQTLQGVVERFKGSRVLGGAVVSLVGLATVVVVLLKNRFIDFAAQSA 124

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +  +         +G   Y QY  P E     LL  +IG I++  + 
Sbjct: 125 VGEIPMNTIGTALLGSEKY-QYVLPFEFISVFLLACIIGGIMIARKE 170


>gi|297192747|ref|ZP_06910145.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197721066|gb|EDY64974.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 214

 Score = 90.1 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 18  EIAFLLVGVVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 77

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + ++AA  +V        +   +L   
Sbjct: 78  SVVVLLLFGLMLTKAPIGRSPDADSGNRWVALAVAVVAAVSLVWVVVDAFRTTWIDLDGP 137

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                + +  G++L+  +  P E    +LL ++IGAIVL  +   +
Sbjct: 138 AQ--GSTKVSGEILFRHWVLPFEALSVLLLAALIGAIVLSRKDGEE 181


>gi|48478734|ref|YP_024341.1| NADH dehydrogenase subunit 6 [Saccharum hybrid cultivar SP-80-3280]
 gi|50812597|ref|YP_054698.1| NADH dehydrogenase subunit 6 [Saccharum officinarum]
 gi|118614545|ref|YP_899460.1| NADH-plastoquinone oxidoreductase subunit 6 [Sorghum bicolor]
 gi|75255217|sp|Q6ENP4|NU6C_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|75261504|sp|Q6L3D7|NU6C_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|221272344|sp|A1E9X7|NU6C_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|48478636|gb|AAT44656.1| NADH dehydrogenase subunit 6 [Saccharum hybrid cultivar SP80-3280]
 gi|49659581|dbj|BAD27362.1| NADH dehydrogenase ND6 subunit [Saccharum hybrid cultivar NCo 310]
 gi|118201179|gb|ABK79549.1| NADH-plastoquinone oxidoreductase subunit 6 [Sorghum bicolor]
          Length = 176

 Score = 89.3 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
             K    +G  F  +L   +       +  ++   +               NNV+ IG  
Sbjct: 90  --KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147

Query: 138 LYTQYAYPLE 147
           L T +  P E
Sbjct: 148 LATDFYLPFE 157


>gi|11467258|ref|NP_043090.1| NADH dehydrogenase subunit 6 [Zea mays]
 gi|1171828|sp|P46621|NU6C_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|902287|emb|CAA60351.1| NADH dehydrogenase ND6 [Zea mays]
          Length = 176

 Score = 89.3 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
             K    +G  F  +L   +       +  ++   +               NNV+ IG  
Sbjct: 90  --KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147

Query: 138 LYTQYAYPLE 147
           L T +  P E
Sbjct: 148 LATDFYLPFE 157


>gi|282877796|ref|ZP_06286609.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           buccalis ATCC 35310]
 gi|281300112|gb|EFA92468.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           buccalis ATCC 35310]
          Length = 173

 Score = 89.3 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 65/166 (39%), Gaps = 4/166 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+ + V  +  + +   LIF     AG++ LLG  ++    + +Y G 
Sbjct: 5   IMFCILAVVILGSAIMCVLTKRIMRAATFLIFVLFGVAGIYFLLGYTYLGAAQIAIYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + + ++F I ++            +G        +    L       +      + +++ 
Sbjct: 65  ITILYIFAIQLVSKRTLQGLVEHLKGSRVIQGALLSLIGLATVIGVLVKNQFIHQAAQVA 124

Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
                +  IG+ L      QY  P E+    LL  +IG +++  + 
Sbjct: 125 DAEVPMNVIGQALVGSEKYQYVLPFELISVFLLACIIGGLLIARKE 170


>gi|312129478|ref|YP_003996818.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Leadbetterella byssophila DSM 17132]
 gi|311906024|gb|ADQ16465.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Leadbetterella byssophila DSM 17132]
          Length = 159

 Score = 88.9 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 7/166 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F+LF  + I     V+  +N +Y+ + L+  F+  AG+F+  GAEF+A   +++Y
Sbjct: 1   MIDLVFWLFCLLTIGGGVYVLLSKNVLYAAYGLLSTFLGVAGMFVFAGAEFMAAAQIMIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VG +++  +F IM+      +      +   G     +LAA  IV      + S E    
Sbjct: 61  VGGIMILLIFGIMLSTRRKYLVVEDAAQNR-GILVAVLLAAVWIVLIIKLRLLSGE---- 115

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               +  +++ +G  L T +   LE+ G ILL++++GA  +    R
Sbjct: 116 --PVELISIKKVGLALMTSHVLILELVGVILLMALVGATYIARDDR 159


>gi|326402931|ref|YP_004283012.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum
           AIU301]
 gi|325049792|dbj|BAJ80130.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum
           AIU301]
          Length = 166

 Score = 88.9 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 2/158 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + +A++++ +++T  + ++ +  L  + +  A +F +LGA F A + +++Y GA++
Sbjct: 5   FVISAIIAVVATAMMITRPSAVHGLLYLTVSLLAVALVFFVLGAPFAAALEVIIYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML+I    A          ++    + A L+      +  S  G L      
Sbjct: 65  VLFVFVIMMLNIGEAAARLESSWLHPATWVGPSILALLLAIELGAVAVS--GGLPHPATS 122

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
             +   +G  L   Y   +E++ F+LL  ++ A  L  
Sbjct: 123 VISAHAVGVALVGPYMLAVELASFLLLAGLVAAFHLGR 160


>gi|328884360|emb|CCA57599.1| NADH-ubiquinone oxidoreductase chain J [Streptomyces venezuelae
           ATCC 10712]
          Length = 182

 Score = 88.9 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 2/166 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 17  EIAFLLVGLVTLGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 76

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +     R    +  + + AA  +V        +   +L   
Sbjct: 77  SVVVLLLFGLMLTKAPIGRSPDADSRNKPVAVAVALAAAAALVWVVVDAFRTTWIDLDGA 136

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           V    + +  G++L+  +  P E    +LL +++GAIVL  + +  
Sbjct: 137 VQ--GSTKVSGEILFRHWVLPFEALSVLLLAALVGAIVLSRKKKEG 180


>gi|242910154|ref|YP_002970698.1| NADH-plastoquinone oxidoreductase subunit 6 [Alsophila spinulosa]
 gi|218454823|gb|ACK77160.1| NADH-plastoquinone oxidoreductase subunit 6 [Alsophila spinulosa]
          Length = 195

 Score = 88.9 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 9/164 (5%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L     ++ S  VV++ N ++S F L   F   +  +L+L A+ +A   L+VYVGA+ V 
Sbjct: 14  LIELGILLGSLGVVSLANVVHSAFLLGLVFTRISLSYLVLNADSLAAAQLLVYVGAINVL 73

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV---- 125
            +  + + D   E   P     +   +FI + A   +   S  M++S    +        
Sbjct: 74  IVSAVTVTD---EPTSPNSTTNWSIGYFITLGACTGLFSLSTIMIYSTRWSIVNESKILV 130

Query: 126 --FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                NNV+ +G  L T +  P E+   +LL++++GAI L    
Sbjct: 131 EKTSENNVQGLGYKLLTTFLVPFELLSILLLVALVGAITLARNE 174


>gi|77164628|ref|YP_343153.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Nitrosococcus oceani ATCC 19707]
 gi|254433511|ref|ZP_05047019.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Nitrosococcus oceani AFC27]
 gi|76882942|gb|ABA57623.1| NADH dehydrogenase subunit J [Nitrosococcus oceani ATCC 19707]
 gi|207089844|gb|EDZ67115.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Nitrosococcus oceani AFC27]
          Length = 167

 Score = 88.9 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + FY+ + +A++S+ +V+T  N I+++  LI + +  A +F LLGA F A + +++Y G
Sbjct: 2   EITFYIAAIIAVVSTAMVITRLNAIHALLYLIVSLLAVALIFFLLGAPFAAALEVIIYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++  E      +      +    + + +++    +++ +    LS  
Sbjct: 62  AIMVLFVFVMMMLNLGEEAVAQENRWLTPSMWIGPGILSFVLLIELVYLLVAESSALSST 121

Query: 125 VFKGNNVENIGKVLYTQY 142
                  + +G  L+  Y
Sbjct: 122 KMIPP--QQVGITLFGPY 137


>gi|157816261|ref|YP_001492832.1| NADH dehydrogenase subunit 6 [Tilletia indica]
 gi|187373139|ref|YP_001876482.1| ND6 [Tilletia walkeri]
 gi|115361454|gb|ABI95820.1| NADH dehydrogenase subunit 6 [Tilletia indica]
 gi|144925994|gb|ABP03928.1| ND6 [Tilletia walkeri]
          Length = 294

 Score = 88.9 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 58/115 (50%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +      +  AI S  LV+T +NP+ SV  LI  FVN AG  +LLG  F+ +  L+VY
Sbjct: 1   MNNFLLDFLAIRAIFSGILVITSKNPVISVLFLISVFVNIAGYLILLGVGFIGISYLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VGA+ + FLF++MML++ I       K          I+ +  I    + +  S 
Sbjct: 61  VGAIAILFLFVVMMLNLQIAELSSIGKEYTQNIPLGTIIRSLFIFELVSLLPISN 115



 Score = 43.9 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +E+IG +LYT   + L ++  ILLL+MIG I L + ++  
Sbjct: 254 IESIGYLLYTNNRFWLILTSVILLLAMIGPITLSISNKNR 293


>gi|218176294|ref|YP_002364551.1| NADH-plastoquinone oxidoreductase subunit 6 [Festuca arundinacea]
 gi|215882378|gb|ACJ70808.1| NADH-plastoquinone oxidoreductase subunit 6 [Festuca arundinacea]
          Length = 160

 Score = 88.9 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M ++       
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVN--GSECS 87

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
             K    +G  F  I+   ++      +  ++   +               NNV+ +G  
Sbjct: 88  KDKNYWTIGDGFTSIVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQMGIH 147

Query: 138 LYTQYAYPLEISG 150
           L T +  P E   
Sbjct: 148 LATDFYLPFEFIS 160


>gi|261879872|ref|ZP_06006299.1| NADH dehydrogenase I [Prevotella bergensis DSM 17361]
 gi|270333465|gb|EFA44251.1| NADH dehydrogenase I [Prevotella bergensis DSM 17361]
          Length = 175

 Score = 88.5 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 70/171 (40%), Gaps = 6/171 (3%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + ++   V     + +   L+      AG++ +LG  F+    + +Y G 
Sbjct: 5   IVFCILAVVILGAAIASVLTARIMRAATFLLLVLFGIAGIYFVLGYTFLGAAQISIYAGG 64

Query: 66  VIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           + + ++F I ++       + E  K +  +    I ++    ++       F A  + + 
Sbjct: 65  ITIMYIFAINLMSKHSLQGLVEQFKGKRVVQGALISLVGLATVLVVYLKSEFLAHAQFNS 124

Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +      V+ IG+ L      QY  P E+    LL  +IG I++  +  + 
Sbjct: 125 VADLELPVQKIGEALVGSEKYQYVLPFELISVFLLACIIGGIMIARKEDKK 175


>gi|116749372|ref|YP_846059.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698436|gb|ABK17624.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Syntrophobacter fumaroxidans MPOB]
          Length = 172

 Score = 88.5 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 4/150 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  FY+ + + + S+ + +T RN +++V  LIF++   A LF L GA  +A   ++
Sbjct: 1   MTLYAFLFYIVAGITVASTAMAITRRNLVHAVIYLIFSYFGTAVLFYLFGAPLLAAFEVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA++V FLFI+MM+ I+           +L +   G+    + +     M+ +  G 
Sbjct: 61  IYAGAIMVLFLFIVMMIRIESYGELMFPPGQWLPAAVFGL----VYLVVGILMISATPGT 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISG 150
              L           + ++  +   +EI  
Sbjct: 117 EIPLQTVLATPREFARYVFQNHWLSVEIVS 146


>gi|323345261|ref|ZP_08085484.1| NADH-quinone oxidoreductase subunit J [Prevotella oralis ATCC
           33269]
 gi|323093375|gb|EFZ35953.1| NADH-quinone oxidoreductase subunit J [Prevotella oralis ATCC
           33269]
          Length = 173

 Score = 88.5 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + S + + S+ + V  +  + +   LIF     AGL+ LL   ++    + +Y G 
Sbjct: 5   IMFCILSVVILGSAIMCVMTKRIMRAATFLIFVLFGVAGLYFLLDYTYLGAAQISIYAGG 64

Query: 66  VIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAEGE 120
           + V ++F I ++       + E  K    +    + +     +V       F+  SA   
Sbjct: 65  ITVLYIFAIQLVSKRTLQGLVERIKGSRLIAGLLVSLFGLATVVIVLLKNKFLDMSASVS 124

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            + +         +G   Y QY  P E     LL  +IG +++  +  + 
Sbjct: 125 DTEVPMNTIGTALVGSEKY-QYVLPFEFISVFLLACIIGGLMIARKEDKK 173


>gi|58045440|gb|AAW65047.1| NADH dehydrogenase subunit 6 [Dictyoneurum californicum]
          Length = 311

 Score = 88.5 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 54/106 (50%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +  I    V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATIGGILGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LIV   +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGTLIFILFLIVVIYS 110


>gi|78042971|ref|YP_360251.1| proton-translocating NADH-quinone oxidoreductase subunit J
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995086|gb|ABB13985.1| proton-translocating NADH-quinone oxidoreductase, J subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 169

 Score = 88.5 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + + F + +F+ I S+  VV +RN ++SV  L   FV  A  +L+L A F+A + LVVY 
Sbjct: 5   EVIAFAIVAFLLIFSALGVVFMRNIVHSVLFLAATFVLMAVTYLMLDAGFLAGVQLVVYA 64

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GAV +  +F +M+             R    +    I++  + +  S  +V +      R
Sbjct: 65  GAVSIMVVFAVMLTKRSDLHETNLFNR---LTIPGAIISFLVFIGLSWVVVKTPWNLAER 121

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            +     +  +  +++ ++  P E++  +LL+++IGAI+L L  + 
Sbjct: 122 PLVDPMAINKLADLMFGKFVIPFEVAAVLLLVALIGAIILALEVKP 167


>gi|326777313|ref|ZP_08236578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657646|gb|EGE42492.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           cf. griseus XylebKG-1]
          Length = 212

 Score = 88.5 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 2/167 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 35  EIAFLLVGLVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 94

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  +   AA  +V        +   +L   
Sbjct: 95  SVVVLLLFGLMLTRAPIGRSPDADSGNRWVALGVAAAAAAALVWVVVDAFRTTWIDLDGP 154

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                + E  G  L+  +  P E    +LL +++GAIVL  +H  D 
Sbjct: 155 AQ--GSTEVTGAFLFRNWVLPFEALSVLLLAALVGAIVLSRKHDTDT 199


>gi|260592329|ref|ZP_05857787.1| NADH dehydrogenase I, subunit 6 [Prevotella veroralis F0319]
 gi|260535716|gb|EEX18333.1| NADH dehydrogenase I, subunit 6 [Prevotella veroralis F0319]
          Length = 179

 Score = 88.5 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 76/172 (44%), Gaps = 7/172 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+   V+ +  + +  +L+F     AGL+ LL   F+    + +Y G 
Sbjct: 5   IMFAILAVVILASAIFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAAQISIYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           + + ++F I ++          +   KR FL +    +  A ++V      + ++     
Sbjct: 65  ITMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAAIALVGFATVVVVLLKNALINSTIVNG 124

Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            ++ K   ++ IG+ L +     Y  P E     LL  +IG +V++   +++
Sbjct: 125 DMLSKEVTMDTIGQNLMSADKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 176


>gi|225155888|ref|ZP_03724373.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae
           bacterium TAV2]
 gi|224803341|gb|EEG21579.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae
           bacterium TAV2]
          Length = 178

 Score = 88.5 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 6/174 (3%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L   L +   ++++   +++RN I S   L+ A++  A  +L  GAEFVA   ++VYVGA
Sbjct: 2   LTLLLIAAFTLVTAAAALSLRNIIRSAIFLVPAWIGIAAFYLWAGAEFVAFAQVLVYVGA 61

Query: 66  VIVFFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122
           + +  LF +++     D    EP  +R    +   G   A +I  A       +    + 
Sbjct: 62  ISMVVLFAVVLTRRAPDDPAEEPATRRRLNWAVAAGGAVAAMIFAAILCTALPSPDSAAL 121

Query: 123 ---RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
                      ++++G  L  ++A  + I+G +L ++++G+I+L    +    R
Sbjct: 122 ASDAPPPPSLTIKDLGHALTGEHAAAVLITGALLTVALLGSILLAATDKPRDAR 175


>gi|313202847|ref|YP_004041504.1| NADH dehydrogenase subunit j [Paludibacter propionicigenes WB4]
 gi|312442163|gb|ADQ78519.1| NADH dehydrogenase subunit J [Paludibacter propionicigenes WB4]
          Length = 167

 Score = 88.5 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 7/168 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + FY+   +  I S + VT +  I S   L+F  +  AGL+LLLG  ++  + + VY 
Sbjct: 3   QQIIFYILGAIIAIFSIMAVTSKRIIRSATYLLFVLLATAGLYLLLGYNYLFAVQIAVYA 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           G V+V F+F I++ +   E  +       + +   GI A   +    + + ++     + 
Sbjct: 63  GGVMVLFIFAILLTNRPGESVKTELPIRRVAA---GITALAGVAFCGHIIYWNIRKVSTL 119

Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167
           +       + +G  +      QY  P E    +LL  +IGAI++  + 
Sbjct: 120 VAQADLTPQQLGHTMMGTEKYQYLLPFEAISILLLACIIGAIMIARKR 167


>gi|124004524|ref|ZP_01689369.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Microscilla marina ATCC 23134]
 gi|123990096|gb|EAY29610.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Microscilla marina ATCC 23134]
          Length = 193

 Score = 88.5 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 94/193 (48%), Gaps = 23/193 (11%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+++ +FF   + + + S+ +++  R  +Y+ FSL+   +  + L++  GA+F+A+  ++
Sbjct: 1   MILKIVFFGFVALIGV-STLVLLGTRKVLYAAFSLLLILLGISALYVFAGADFLAVTQII 59

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPR-----------------KKRGFLGSFFIGILAA 103
           +YVG ++V  LF IM+ +   +    R                 K R  L    +G+   
Sbjct: 60  IYVGGILVLLLFGIMLTNRPPQNLSIRFSNPFQQDETSDVQPLTKTRNNLAGIVLGLGLL 119

Query: 104 ELIVCA-----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMI 158
            ++V A        M +  +   ++ V K + V+ +G  L TQY    E+   +L+++++
Sbjct: 120 AILVFAIHKANLGQMPWIKQAVQNQQVIKQSTVQGLGIQLMTQYVLVFEVIAVLLMVALL 179

Query: 159 GAIVLMLRHRRDI 171
           GA+++  R  +  
Sbjct: 180 GAVLIAGRTEKKT 192


>gi|148260116|ref|YP_001234243.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Acidiphilium
           cryptum JF-5]
 gi|146401797|gb|ABQ30324.1| NADH dehydrogenase subunit J [Acidiphilium cryptum JF-5]
          Length = 166

 Score = 88.5 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 2/158 (1%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F + + +A++++ +++T  + ++ +  L  + +  A +F +LGA F A + +++Y GA++
Sbjct: 5   FVISAIIAVVATAMMITRPSAVHGLLYLTVSLLAVALVFFVLGAPFAAALEVIIYAGAIM 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F+F+IMML+I    A          ++    + A L+      +  S  G L      
Sbjct: 65  VLFVFVIMMLNIGEAAARLESSWLHPATWVGPSILALLLAIELGAVAVS--GGLRHPATS 122

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
             +   +G  L   Y   +E++ F+LL  ++ A  L  
Sbjct: 123 VISAHAVGVALVGPYMLAVELASFLLLAGLVAAFHLGR 160


>gi|294814433|ref|ZP_06773076.1| Putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC
           27064]
 gi|326442823|ref|ZP_08217557.1| putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC
           27064]
 gi|294327032|gb|EFG08675.1| Putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC
           27064]
          Length = 218

 Score = 88.5 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 2/143 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   +   ++ L VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 20  EIVFLLVGLVTFGAAVLTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 79

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + + AA  +V        +   +L   
Sbjct: 80  SVVVILLFGLMLTRAPIGRSPDADSGNRWVALAVALTAATALVWVVVDAFRTTWIDLDGP 139

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
           V    + E  G +L+  +  P E
Sbjct: 140 VQ--GSTEVTGSILFRHWVLPFE 160


>gi|27904654|ref|NP_777780.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372471|sp|Q89AT8|NUOJ_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|27904051|gb|AAO26885.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 164

 Score = 88.5 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 1/154 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
             FFY  S   I+ +   +  RN +YS+  LI +FV  + +F  LGA F A + +++Y G
Sbjct: 2   EFFFYSSSLATIVFTVCSIFSRNLMYSLLYLILSFVFTSCVFFSLGATFAAALEVIIYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F IMM +         K       ++I  L    I+    F + S   +  ++
Sbjct: 62  AIMVLFVFFIMMFNFKKSTLYAEKIFDKNNYYYINFLFLLCILIFPFFFILSYLYK-EKI 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMI 158
            +   + + +   L++ Y   +E+S  +LL ++I
Sbjct: 121 FYMVVSTKLVAIKLFSDYILVIELSSIVLLSALI 154


>gi|116329147|ref|YP_798867.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330245|ref|YP_799963.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121891|gb|ABJ79934.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123934|gb|ABJ75205.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 224

 Score = 88.2 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 43/206 (20%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q L F+LF+ + I+SS  V+   N I +   L+ +F + A ++ ++ A F+A + L+VY 
Sbjct: 8   QLLLFFLFASVMILSSLGVIFHPNAITAAVLLVLSFFSLAAIYAVMNAVFIATMQLLVYA 67

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           GA++V  +F++M+L +  +  +       +       L   L V     +      E S 
Sbjct: 68  GAIMVLVVFVLMLLSLREDDTKLFLFEKPIKKLLYLGLVMFLDVLLITAVQDGIPSENSP 127

Query: 124 -------------------------------------------LVFKGNNVENIGKVLYT 140
                                                      LV    N   +G  ++ 
Sbjct: 128 KIGYTKTRDGRSMDYSFTIHPRRPEYKEFEEYKSKGLSIRPPSLVEVSGNTAVVGSAMFL 187

Query: 141 QYAYPLEISGFILLLSMIGAIVLMLR 166
           +Y  P E+   +LL +++G +VL  +
Sbjct: 188 RYLLPFELISILLLAAVLGVVVLGKK 213


>gi|58045436|gb|AAW65045.1| NADH dehydrogenase subunit 6 [Costaria costata]
          Length = 311

 Score = 88.2 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 54/106 (50%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +  I    V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGILGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L  F   I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYFGALIFVIFLIAAIYS 110


>gi|297570905|ref|YP_003696679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931252|gb|ADH92060.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 330

 Score = 88.2 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 85/182 (46%), Gaps = 3/182 (1%)

Query: 4   QSLFFYLFSFMAIISSF-LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +++ F + +   +  +   ++  R  + +  S+I   V  A L+  L A F+ ++ +VVY
Sbjct: 12  ETILFSVTAVGMVALAIFGLLITRKAVLTTLSVIGVMVGFAVLYTALEAPFMGVVQVVVY 71

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA+++ FLF++M++ +D   +     +       +G +   LI+    F   +  G   
Sbjct: 72  TGAILMMFLFVLMLIGVDSADSGHETLKVQRPVAILGGVGIALILIGVAFGAHAPAGIGL 131

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182
                  N   +  ++++     L+++G +L+++ +GA+ L  R R  +K +   ++L  
Sbjct: 132 EQANAVTNPVGVATLIFSSSVLTLQLTGTLLIVAALGAMTLTHRDR--VKERITQEELAH 189

Query: 183 NP 184
             
Sbjct: 190 KR 191


>gi|260677470|ref|YP_003208252.1| NADH-plastoquinone oxidoreductase subunit 6 [Coix lacryma-jobi]
 gi|209361408|gb|ACI43323.1| NADH-plastoquinone oxidoreductase subunit 6 [Coix lacryma-jobi]
          Length = 176

 Score = 87.8 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  + LL + FVA+  L++YVGA+ V  +F +M +       +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVSGSEWSKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137
             K    +G  F  +L   +       +  ++   +               NNV+ IG  
Sbjct: 90  --KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147

Query: 138 LYTQYAYPLE 147
           L T +  P E
Sbjct: 148 LATDFYLPFE 157


>gi|290958202|ref|YP_003489384.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces scabiei 87.22]
 gi|260647728|emb|CBG70833.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces scabiei 87.22]
          Length = 217

 Score = 87.8 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   +   ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 34  EIAFLLVGLVTFGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 93

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + + AA  +V        +   +L   
Sbjct: 94  SVVVLLLFGLMLTKAPIGRSPDADSGNRWAALTVAVAAAAALVWVVVDAFRTTWIDLDGP 153

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + E  G+ L+  +  P E    +LL +++GAIVL  + +
Sbjct: 154 AA--GSTEATGESLFQNWVLPFEALSVLLLAALVGAIVLSRKAK 195


>gi|260912214|ref|ZP_05918766.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633648|gb|EEX51786.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295]
          Length = 173

 Score = 87.8 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 4/169 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + I S+ + V  +  + +   L+F     AG++ LL   F+    + +Y G 
Sbjct: 5   IMFCILAVVIIGSAIVCVFTKRIMRAATFLLFVLFGVAGVYFLLDYTFLGTAQIAIYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + + ++F I ++          ++RG        +    L+  A   +        + +V
Sbjct: 65  LTMLYIFAIQLVSKRTLQGLQERQRGKTVVAGALVALIGLVTVALVLLKNQFIDMSASMV 124

Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                +  IG+ L      QY  P E     LL  +IG I++  +  + 
Sbjct: 125 DAEVPMSVIGEKLVGAGKYQYVLPFEFISVFLLACIIGGIMIARKEDKK 173


>gi|256371189|ref|YP_003109013.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007773|gb|ACU53340.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 192

 Score = 87.8 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 4/165 (2%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-- 80
           V+ R P+++   L+      A LF+  GA+F+A + +VVY GAV+V FLF+IM+L +D  
Sbjct: 29  VSARQPVHAALFLVLTLFGVAILFIQEGAQFLAAVQVVVYAGAVVVLFLFVIMLLGVDRV 88

Query: 81  -IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
            +        R +     +  +  EL + A    V +    L+  +  G+N+  + + ++
Sbjct: 89  EVSSIVGSGWRVWAAGIGVAAVLVELGLLAIGHEV-TGASSLAGKLSAGSNLGVLARSVF 147

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
           T Y  P E++  +L++++IGA+VL  R R+      +S+  E +P
Sbjct: 148 TTYVLPFELTSVLLVIAVIGAVVLARRLRQRSDATTVSRSEEVHP 192


>gi|87043016|ref|YP_492630.1| NADH dehydrogenase subunit 6 [Dictyostelium citrinum]
 gi|122000117|sp|Q2LCR2|NU6M_DICCI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|84682116|gb|ABC60381.1| NADH dehydrogenase subunit 6 [Dictyostelium citrinum]
          Length = 226

 Score = 87.8 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 32/204 (15%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
            +F+++   NPIYS+ +LI  +   A + L +  EF+A I ++V VGA+ V FLFI+MM+
Sbjct: 17  CTFVILRSVNPIYSILNLIVIYGCYASILLTVEMEFLACIYILVNVGAIAVLFLFIVMMI 76

Query: 78  DIDIEVAEPRKKRGFLGSF--FIGILAAELIVC-----------------------ASNF 112
           +I+I   +   K+  +  F  FIG++    I+                         +  
Sbjct: 77  NINIVEIQETMKKYNIYMFVGFIGLIGIMGILITNYQIRIKEEVIADFSMFLLNTEITTL 136

Query: 113 MVFSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM------L 165
               +  +   L  +  ++  +G  V+Y   +    ++  ILL+ M+G I +        
Sbjct: 137 QATPSYLDFYELFVETTDLRAMGSNVIYGSQSIWFIMACIILLIGMVGVIYITEDLIIEK 196

Query: 166 RHRRDIKRQDISKQLESNPDNSIV 189
           R     +RQDI+ Q+      +I 
Sbjct: 197 RKLNARRRQDINSQVLREYKITIK 220


>gi|283778525|ref|YP_003369280.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula
           staleyi DSM 6068]
 gi|283436978|gb|ADB15420.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula
           staleyi DSM 6068]
          Length = 328

 Score = 87.8 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 61/126 (48%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           ++    F++ + +AI S+   +  ++P+YS      + +  AGLF   GAEF+ + T+VV
Sbjct: 72  IIAQGVFWVLALIAIGSAVGTIGSQSPVYSAIWFAMSLLGTAGLFFYQGAEFLGVATIVV 131

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA++V FLF+IM+          R   G    F   I AA  I   +  +    + +L
Sbjct: 132 YAGAIVVTFLFVIMLAQPSGHSDYDRISWGSAARFLSVIAAATFIGLFTMLLGGLKQPDL 191

Query: 122 SRLVFK 127
            + V  
Sbjct: 192 RQQVAS 197



 Score = 42.7 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 32/54 (59%)

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           AE      V    +V  +G+ +++++   +E++G +LL++++GAI + ++ +  
Sbjct: 267 AEPTFVPDVQDRQHVAGLGRYIFSRHLVGVEVAGSLLLVALVGAIAIAIQGKPR 320


>gi|149390406|ref|YP_001294405.1| NADH dehydrogenase subunit 6 [Dioscorea elephantipes]
 gi|221272321|sp|A6MMR0|NU6C_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|148668098|gb|ABR01482.1| NADH-plastoquinone oxidoreductase subunit 6 [Dioscorea
           elephantipes]
          Length = 176

 Score = 87.8 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 8/152 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  +       + I+    VV + N IYS FSL +     +  ++   + FVA   L++Y
Sbjct: 7   IHDILVIFLGSVLILGGLGVVLLNNLIYSAFSLGWVLFCISLFYISSNSYFVAAAQLLIY 66

Query: 63  VGAVIVFFLFIIMML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VGA+ V  +F +M +       D  +             S F  ++           +  
Sbjct: 67  VGAINVLIIFAVMFISGSEYSNDSHLWTVGDGVTSVVCTSIFFSLITTIPDTSWYGIIWT 126

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLE 147
           +   ++       +NV+ IG  L T +  P E
Sbjct: 127 TRSNQIIEQDL-ISNVQQIGIHLSTNFYLPFE 157


>gi|77019999|ref|YP_337883.1| NADH dehydrogenase subunit 6 [Aspergillus niger]
 gi|75993219|gb|ABA33724.1| NADH dehydrogenase subunit 6 [Aspergillus niger]
          Length = 217

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 37/193 (19%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMI-TLVVYVGAVIVFFL 71
            ++I+        RNP+ S   LI  FV+ AG+ +L+G + + +   ++VYVGA    FL
Sbjct: 25  IISILFGIFTTISRNPLVSAVFLIGVFVDIAGVLILVGDDDIGVSSYILVYVGAAATLFL 84

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV------CASNFMVFSAEGELSRL- 124
            I+M++++ I        R    +     L   ++          N +V S+    S + 
Sbjct: 85  LILMLINMRISELVSETNRDTPWAVITVSLFYFIMGQVTPSNFTDNTIVTSSSTSFSEVY 144

Query: 125 -----------------------------VFKGNNVENIGKVLYTQYAYPLEISGFILLL 155
                                        + +  ++  IG  +YT Y+  L IS  ILL+
Sbjct: 145 DLQVDDEILNIVDLQQETASASSKSGDTSLVELPHLSGIGNSMYTNYSLWLIISSVILLV 204

Query: 156 SMIGAIVLMLRHR 168
            M+GAIV+ ++ +
Sbjct: 205 GMVGAIVITIKQK 217


>gi|90579197|ref|ZP_01235007.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Vibrio
           angustum S14]
 gi|90440030|gb|EAS65211.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Vibrio
           angustum S14]
          Length = 177

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 79/168 (47%), Gaps = 5/168 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++ FY  S + ++++  ++ V+ P++    L  + +  A +F LLGA F+A + ++
Sbjct: 1   MLTWNIIFYASSAIMLLAAISLLFVKEPMHGAVYLTTSLLALAVIFYLLGAPFIAALQII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGA++V F+F IM+            +   L    + I+  E  +  ++   F     
Sbjct: 61  LYVGAIMVLFVFFIMLSPASRTFPLTANRTVILPVILLTIMLVEAFIVLNHGHQFYTIET 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           +  +       + +G  L+  Y   +E    +LL +++  I L  + +
Sbjct: 121 IKTISP-----KAVGADLFNHYKLAIEALSTLLLGALVAVIYLAAQMK 163


>gi|58045444|gb|AAW65049.1| NADH dehydrogenase subunit 6 [Alaria fistulosa]
          Length = 311

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 55/106 (51%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +  I    V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGILGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I A  L+V   +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGSLIFALFLVVVIYS 110


>gi|294674395|ref|YP_003575011.1| proton-translocating NADH-quinone oxidoreductase J subunit
           [Prevotella ruminicola 23]
 gi|294473669|gb|ADE83058.1| putative proton-translocating NADH-quinone oxidoreductase, J
           subunit [Prevotella ruminicola 23]
          Length = 171

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            ++ F + +   I S+ + VT    + +   ++F     AG++ LL   F+    + VY 
Sbjct: 3   NTVMFIILAVFIIASALMCVTTTKIMRAATFMLFVLFGVAGIYFLLDYTFLGAAQISVYA 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           G V + ++F I ++       +  ++R        G LAA   +     ++         
Sbjct: 63  GGVTMIYVFAIQLVSKR--TLQGLEERVKSSKMITGALAALAGLVVVGLILLKTGFYTQE 120

Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +      ++ IG  L      QY  P E     LL  +IG +V+  +  +
Sbjct: 121 IAGVEVPMKEIGTALVGSGKYQYVLPFEFISVFLLACIIGGLVVARKEDK 170


>gi|325298887|ref|YP_004258804.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           salanitronis DSM 18170]
 gi|324318440|gb|ADY36331.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides
           salanitronis DSM 18170]
          Length = 175

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 3/170 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           +  Q++ FY+ +    + S L VT    + +   L+F     A +F +LG  F+  + L+
Sbjct: 7   LSFQNIVFYVVAAAIALCSVLAVTSGKLLRAATYLLFVLFGTAAIFFMLGYTFLGAVQLM 66

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF--IGILAAELIVCASNFMVFSAE 118
           VY G +IV ++F I +   D ++     K          +   A  L++  +N    +A 
Sbjct: 67  VYAGGIIVLYVFSIALTRSDKDMRYKISKARLFSVLATTVVGAALVLLLLFTNGFALNAI 126

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                L  +   +  IG   Y Q+  P E+   +LL  MIG I++  + +
Sbjct: 127 PLGEELPSREVGMALIGTEKY-QFVLPFEVVSVLLLACMIGGILIARKEK 175


>gi|238061175|ref|ZP_04605884.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. ATCC 39149]
 gi|237882986|gb|EEP71814.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Micromonospora sp. ATCC 39149]
          Length = 190

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           MA+ +  LVVT R+ + +   L+      AGL+L+L AE VA + +++YVGAV+V  LF 
Sbjct: 1   MAVGAGALVVTTRHLVRAGLYLVVCLGALAGLYLVLTAELVAWVQVLIYVGAVVVLLLFA 60

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133
           +M+    I  ++   + G+  +   G     L     +   ++        + +    E 
Sbjct: 61  VMLTRAPIGASDDLDRPGWPAALIGGGTGLGLAALLVDAFRWT-----RVDLPEPGTAER 115

Query: 134 IGKVLYTQYAYPLE 147
           +G+ ++  +  P E
Sbjct: 116 LGEQVFRTWVLPFE 129


>gi|58045438|gb|AAW65046.1| NADH dehydrogenase subunit 6 [Agarum clathratum]
          Length = 311

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFFFFLIAAIYS 110


>gi|329938294|ref|ZP_08287745.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces griseoaurantiacus
           M045]
 gi|329302783|gb|EGG46673.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces griseoaurantiacus
           M045]
          Length = 215

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 2/143 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 31  EIAFLLVGLVTLGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 90

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + + AA  +V        +   +L   
Sbjct: 91  SVVVLLLFGLMLTRAPIGRSPDTDSGNRWAALTVALAAAAALVWVVADAFRTTWVDLDGA 150

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                + E  G+ L+  +  P E
Sbjct: 151 P--SGSTEVTGQALFQNWVLPFE 171


>gi|11466192|ref|NP_066515.1| NADH dehydrogenase subunit 6 [Naegleria gruberi]
 gi|10444227|gb|AAG17793.1|AF288092_18 NADH dehydrogenase subunit 6 [Naegleria gruberi]
          Length = 201

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 17/196 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M     FFY  +   IIS+  +V V NPI +V  LI  F N + +F+LL  +F+ ++ L+
Sbjct: 1   MSFLIFFFYFLA---IISAICMVIVINPINAVLFLISVFFNTSMIFILLNVDFMGLLFLM 57

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-G 119
           +YVGA+ V FLFI+MML+I     +            +        +   + +V+     
Sbjct: 58  IYVGAIAVLFLFIVMMLNIKKIEKDNSFYLTVGSFILLFYFLQFFFIFFYDSLVYLPRVF 117

Query: 120 ELSRLVFKGNN------------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +    +  +N            ++ +G +LY +Y + L  +   L  +M+GAI L    
Sbjct: 118 NIDLNSYFFSNFHFLDESMRFMLIKKMGFLLYYEYFFFLIFAALTLFAAMLGAIYLTNEK 177

Query: 168 RRDIKRQDISKQLESN 183
           +    R    +QL  N
Sbjct: 178 QGYSMR-HQYQQLSRN 192


>gi|27544895|ref|NP_775410.1| NADH dehydrogenase subunit 6 [Lecanicillium muscarium]
 gi|27450727|gb|AAO14669.1|AF487277_15 NADH dehydrogenase subunit 6 [Lecanicillium muscarium]
          Length = 214

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 30/194 (15%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  + S +A++    V+  +NPI S+  LI  F + +   +L G  F+    L+VY+GAV
Sbjct: 21  FLDILSVIAVLFGITVIVNKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 80

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114
            + FLFI+M+++I     +         + FIGIL    +     + +            
Sbjct: 81  SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 140

Query: 115 ------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156
                             F         + + +++  IG +LYT Y   L +S  ILLL+
Sbjct: 141 NYNNVLPAVHNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 200

Query: 157 MIGAIVLMLRHRRD 170
           M+GAI++ ++   +
Sbjct: 201 MVGAIIITIKQENN 214


>gi|126666312|ref|ZP_01737291.1| NADH dehydrogenase subunit J [Marinobacter sp. ELB17]
 gi|126629113|gb|EAZ99731.1| NADH dehydrogenase subunit J [Marinobacter sp. ELB17]
          Length = 176

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            FYL   +A++++  V++  NP++ V  L+ + +  A +F  LGA F   + ++VY GA+
Sbjct: 4   AFYLSGLVAVLATLGVISNTNPVHGVLYLVVSLLAVAMVFFALGAPFAGALEIIVYAGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F+F++MML++        +      ++    L A +++     ++   +G +  +  
Sbjct: 64  MVLFVFVVMMLNLGETAVAQERIWLQPRTWLGPSLLAGVLLLTLIDLLLRGDGGV-LVQG 122

Query: 127 KGNNVENIGKVLYTQY 142
              + + +G +L+  +
Sbjct: 123 DVLSAKQVGTILFGPW 138


>gi|290489860|gb|ADD31337.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Rhododendron
           simsii]
          Length = 177

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 8/133 (6%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+ + NPIYS FSL   F + +  ++L  + FVA   +++YVGA+ V  +F +M ++   
Sbjct: 26  VILLPNPIYSAFSLGLVFFSISFFYILSNSHFVAAAQILIYVGALNVLIIFAVMFMNGSE 85

Query: 82  EVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
              +                S F+ ++   L       +  +   ++       +N + I
Sbjct: 86  YYKDFYLWTVGDGITSLVCTSIFVSLITTILDTSWYGIIWATRSNQILEQDL-ISNSQQI 144

Query: 135 GKVLYTQYAYPLE 147
           G  L T +  P E
Sbjct: 145 GIHLSTDFFLPFE 157


>gi|108796692|ref|YP_636526.1| NADH dehydrogenase subunit 6 [Zygnema circumcarinatum]
 gi|122211732|sp|Q32RK0|NU6C_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|61393676|gb|AAX45818.1| subunit 6 of NADH-plastoquinone oxidoreductase [Zygnema
           circumcarinatum]
          Length = 181

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
              +L F +  F  ++ +  VV +   IYS   L F F+  A L+LLL A+F+A   +++
Sbjct: 7   STNTLLFVVLEFAILVGALGVVLLSRVIYSALLLGFVFICVALLYLLLNADFLAAAQVLI 66

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGAV V  +F IM++    +V    K  G + S F  I    L+        +     L
Sbjct: 67  YVGAVNVLIVFAIMLVSTPDDVKNKPKTTGEIISAFTFIALFVLLTIMIFTTSWDTHHNL 126

Query: 122 SR-----LVFKGNNVENIGKVLYTQ 141
           +      L    +NV+ IG  L T 
Sbjct: 127 ATQDEVLLQPLMSNVQTIGFHLLTD 151


>gi|261416520|ref|YP_003250203.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372976|gb|ACX75721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327558|gb|ADL26759.1| NADH-quinone oxidoreductase, J subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 180

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  ++F + + +A+ S+  V+  R+P+Y   SL+ + V+ AG++ LLG+ F+ ++ ++VY
Sbjct: 2   LALIYFIVLAVIAVGSAVCVLLSRHPLYGALSLVASMVSLAGIYGLLGSPFLGVVQIMVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA+++   F+IM+L+   +   P   +  L      I+ A L+  A      + +    
Sbjct: 62  AGAIMMLLTFVIMVLNGARDSHTPMFDKVSLFVIPAVIVLAGLVGFALVRAPIAFDAATV 121

Query: 123 RLVFKGNNVENIGKVLYT------QYAYPLEISGFILLLSMIGAIVLMLRHR 168
           R      +     K L+        Y    E+ G +LL +M GA VL+ + R
Sbjct: 122 RGSVAITS-----KTLFDVAQSGPGYFVLFEVLGVLLLSAM-GAAVLLAKKR 167


>gi|4261644|gb|AAD13944.1|S64009_1 NADH dehydrogenase subunit 6 [Marchantia polymorpha]
          Length = 109

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/104 (42%), Positives = 62/104 (59%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+F  +A++S  +V+  +NP++SV  LI  F N +GL +LLG +F AMI LVVYVGA
Sbjct: 2   ILFYVFVVLALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           + V FLF++MML I IE       R       IG++    I   
Sbjct: 62  IAVLFLFVVMMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLM 105


>gi|302553483|ref|ZP_07305825.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces viridochromogenes
           DSM 40736]
 gi|302471101|gb|EFL34194.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces viridochromogenes
           DSM 40736]
          Length = 209

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   +   ++ + VT R  +++   L+      A  +LLL AEF+A + +++YVG
Sbjct: 17  EIAFLLVGLVTFGAAIVTVTTRQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 76

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + + AA  +V        +   +L   
Sbjct: 77  SVVVLLLFGLMLTRAPIGRSPDADSGNRWAALTVAVAAAAALVWVVVDAFRATWIDLDGP 136

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                + E  G  L+  +  P E    +LL +++GAIVL  + +
Sbjct: 137 AA--GSTEATGASLFQNWVLPFEALSVLLLAALVGAIVLSRKAK 178


>gi|239929558|ref|ZP_04686511.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672]
 gi|291437884|ref|ZP_06577274.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672]
 gi|291340779|gb|EFE67735.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672]
          Length = 255

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 2/143 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   +   ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG
Sbjct: 31  EIAFLLVGLVTFGAAVVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 90

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +VIV  LF +M+    I  +          +  + + AA  +V        +   +L   
Sbjct: 91  SVIVLLLFGLMLTRAPIGRSPDADSGNRWVALAVAVAAAAALVWVVVDAFRTTWIDLDGA 150

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                +V   G  L+  +  P E
Sbjct: 151 PAGSTDVT--GASLFQHWVLPFE 171


>gi|281419768|ref|ZP_06250767.1| NADH dehydrogenase I, subunit 6 [Prevotella copri DSM 18205]
 gi|281406144|gb|EFB36824.1| NADH dehydrogenase I, subunit 6 [Prevotella copri DSM 18205]
          Length = 175

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 71/175 (40%), Gaps = 6/175 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           +      F + + + + S+ + V  +  + +   L+F     AG+F LL   ++    + 
Sbjct: 2   ITANLFMFVILAVVILGSAIMCVFTKRIMRAATFLLFVLFGVAGMFFLLDYTYLGAAQIS 61

Query: 61  VYVGAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           VY G + + ++F I ++        +E  +  +  G      +G +   +IV  ++F+  
Sbjct: 62  VYAGGITMLYVFAIQLVSKRTLQGLVEHVKGSRIVGRALVCLVGFVTLAVIVLKNHFIDM 121

Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           +A    + +         +G   Y  Y  P E     LL  +IG I++  +  + 
Sbjct: 122 AATVADTEVPMDQVGSALVGADKYG-YVLPFEFISVFLLACIIGGILIARKEDKK 175


>gi|21222987|ref|NP_628766.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces coelicolor A3(2)]
 gi|256785900|ref|ZP_05524331.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24]
 gi|289769793|ref|ZP_06529171.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24]
 gi|10129700|emb|CAC08257.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces coelicolor A3(2)]
 gi|289699992|gb|EFD67421.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24]
          Length = 197

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 2/164 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 17  EIAFLLVGLVTLAAAVVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 76

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV+V  LF +M+    I  +          +  + + +A  +V        +   +L   
Sbjct: 77  AVVVLILFGLMLTRAPIGRSPDADSGNRWAALTVAVASAAALVWVVVDAFRTTWIDLDGP 136

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                 V   G  L+  +  P E    +LL +++GAIVL  + +
Sbjct: 137 AAGSTAVT--GASLFQNWVLPFEALSVLLLAALVGAIVLSRKAK 178


>gi|49574628|ref|NP_848113.2| NADH dehydrogenase subunit 6 [Adiantum capillus-veneris]
 gi|68565793|sp|Q85FH2|NU6C_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|48476042|gb|AAP29444.2| NADH dehydrogenase subunit 6 [Adiantum capillus-veneris]
          Length = 197

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 5/170 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +      L     ++ S   V + N + S FSL   F   + L+ +L A+FVA   L+VY
Sbjct: 7   IHDFVLALVELGILLGSLGAVLLVNTVNSAFSLGLVFTCISLLYFVLNADFVAAAQLLVY 66

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-----A 117
           VGA+ V  +F +M+ D         +  G++ +     +   ++    +   +S      
Sbjct: 67  VGAINVLTVFAVMITDEPAGSETTARGIGYIITAGTCTILFSILSFVIHNTKWSDLSLIP 126

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +  +S     G+NV+ +G  L  ++  P E+   +LL +++GAI L    
Sbjct: 127 QSGISTSGTLGSNVQQLGYKLLGEFVIPFELLSILLLAALVGAINLARNE 176


>gi|313679553|ref|YP_004057292.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oceanithermus
           profundus DSM 14977]
 gi|313152268|gb|ADR36119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oceanithermus
           profundus DSM 14977]
          Length = 156

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 11/165 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    FY  +   ++ + L VT  + + +  SL   F   AGL+LLLG+  +A I  +V 
Sbjct: 1   MSLTAFYALAAFVLVFAILAVTTASMVRAALSLAITFFLIAGLYLLLGSPALAAIQFMVN 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
             A+ +  LFIIMM                      G+LAA   +      V   +G+++
Sbjct: 61  ASAIPIMTLFIIMMTQSRASAGPRS------WQIVAGLLAAAAALVFFKGNVGHGDGQIT 114

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +       E +G  L      P E++  +LLL+M+GAIVL  R 
Sbjct: 115 PVSP-----EALGVNLLQAALLPFEVASVLLLLAMVGAIVLARRR 154


>gi|288928303|ref|ZP_06422150.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331137|gb|EFC69721.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 173

 Score = 86.6 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 67/169 (39%), Gaps = 4/169 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + I S+ + V  +  + +   L+F     AG++ LL   F+    + +Y G 
Sbjct: 5   IMFCILAVVIIGSAIVCVFTKRIMRAATFLLFVLFGVAGVYFLLDYTFLGTAQIAIYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + + ++F I ++          ++RG        +    L+  A   +        + +V
Sbjct: 65  LTMLYIFAIQLVSKRTLQGLQERQRGKTVVAGALVALIGLVTVALVLLKNQFIDMSASMV 124

Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                +  IG+ +      QY  P E     LL  +IG I++  +  + 
Sbjct: 125 DAEVPMSVIGEKIVGAGKYQYVLPFEFISVFLLACIIGGIMIARKEDKK 173


>gi|325269273|ref|ZP_08135891.1| NADH dehydrogenase subunit J [Prevotella multiformis DSM 16608]
 gi|324988400|gb|EGC20365.1| NADH dehydrogenase subunit J [Prevotella multiformis DSM 16608]
          Length = 179

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 73/172 (42%), Gaps = 7/172 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+   V+ +  + +  +L+F     AGL+ LL   F+  + + +Y G 
Sbjct: 5   IMFAVLAVVILASAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAVQISIYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           + + ++F I ++          +   KR  L +F      A ++V      +        
Sbjct: 65  ITMMYIFAIQLVSKRTLQGLSERWLGKRTILAAFIALAGFATVVVVLLKNELIRNTVVEG 124

Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             + +   ++ +G+ L +     Y  P E     LL  +IG +V++   +++
Sbjct: 125 DSLSRELTMDTVGQTLMSADKYGYVLPFEFISVFLLACIIGGLVILNHKKKE 176


>gi|57923588|gb|AAW59541.1| NADH dehydrogenase subunit 6 [Postelsia palmaeformis]
 gi|58045454|gb|AAW65054.1| NADH dehydrogenase subunit 6 [Postelsia palmaeformis]
          Length = 311

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 55/106 (51%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L  F I I    L+V   +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYFGILIFFLFLLVAIYS 110



 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N+   VK K 
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAFFSVKEKP 297


>gi|182436713|ref|YP_001824432.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465229|dbj|BAG19749.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 228

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 2/167 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   + + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 36  EIAFLLVGLVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 95

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  +   AA  +V        +   +L   
Sbjct: 96  SVVVLLLFGLMLTRAPIGRSPDADSGNRWVALGVAAAAATALVWVVVDAFRTTWIDLDGP 155

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
                + E  G  L+  +  P E    +LL +++GAIVL  +H  D 
Sbjct: 156 AQ--GSTEVTGAFLFRNWVLPFEALSVLLLAALVGAIVLSRKHDTDT 200


>gi|289474440|gb|ADC97831.1| NADH dehydrogenase subunit 6 [Corallium kishinouyei]
          Length = 154

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLR---------HRRDIKRQDISKQLESN 183
           L++M+GAI+L  +         H     RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPSLYDPHVETRSRQDLFLQISRK 152


>gi|153004150|ref|YP_001378475.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027723|gb|ABS25491.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Anaeromyxobacter sp. Fw109-5]
          Length = 208

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +  + FY+ + +A+  +  V   RN +YS   L+ A + A GL++ L A+FVA+  L+
Sbjct: 42  LTVPGVIFYVLAAIAVAGAVGVAVSRNILYSALGLLMALLGAGGLYVFLSADFVAITQLL 101

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY+G V+V  LF +M+     +V       G +G    G L           +       
Sbjct: 102 VYIGGVLVLVLFAVMLTSRITDVKVSNTSFGPVG----GALLFVAAAPVLLAVALLTPWA 157

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +           +IG    T++  P E++  +LL +++GA+V+  + 
Sbjct: 158 VRIPDALAPTTASIGNAFLTRWLLPFEVASMVLLATLVGAVVIARKE 204


>gi|57923556|gb|AAW59517.1| NADH dehydrogenase subunit 6 [Pleurophycus gardneri]
 gi|58045450|gb|AAW65052.1| NADH dehydrogenase subunit 6 [Pleurophycus gardneri]
          Length = 311

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFVLFLISAIYS 110


>gi|57923532|gb|AAW59499.1| NADH dehydrogenase subunit 6 [Alaria marginata]
 gi|57923536|gb|AAW59502.1| NADH dehydrogenase subunit 6 [Alaria nana]
 gi|57923540|gb|AAW59505.1| NADH dehydrogenase subunit 6 [Alaria taeniata]
 gi|57923572|gb|AAW59529.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia]
 gi|58045442|gb|AAW65048.1| NADH dehydrogenase subunit 6 [Alaria marginata]
          Length = 311

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFVFFLIAAIYS 110


>gi|89073309|ref|ZP_01159839.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Photobacterium sp. SKA34]
 gi|89051019|gb|EAR56483.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Photobacterium sp. SKA34]
          Length = 177

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 80/168 (47%), Gaps = 5/168 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++ FY  S + ++++  ++ V+ P++    L  + +  A +F LLGA F+A + ++
Sbjct: 1   MLTWNIIFYASSAIMLLAAISLLFVKEPMHGAVYLTTSLLALAVIFYLLGAPFIAALQII 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGA++V F+F IM+            +   L    + ++  E  +  ++   F A   
Sbjct: 61  LYVGAIMVLFVFFIMLSPASRTFPLTANRTVILPVILLTVMLVEAFIVLNHGHQFYAIET 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           +  +       + +G  L+  Y   +E    +LL +++  I L  + +
Sbjct: 121 IKTISP-----KAVGADLFNHYKLAIEALSTLLLGALVAVIYLAAQMK 163


>gi|57923528|gb|AAW59496.1| NADH dehydrogenase subunit 6 [Alaria esculenta]
          Length = 311

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFVFFLIAAIYS 110


>gi|81230387|ref|YP_398774.1| NADH dehydrogenase subunit 6 [Aspergillus tubingensis]
 gi|77157975|gb|ABA62003.1| NADH dehydrogenase subunit 6 [Aspergillus tubingensis]
          Length = 217

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 37/193 (19%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAM-ITLVVYVGAVIVFFL 71
            ++I+        RNPI +V  LI  FV+ AG+ +L+G +++ +   ++V VGA    FL
Sbjct: 25  IISILFGIFTTISRNPIVAVLFLIGLFVDIAGVLILVGIDYIGLSSYILVNVGAASTLFL 84

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAEGELSRLVFKGN 129
            I+M++++ I        R    +     L   +I  V  SNF   +     S    +  
Sbjct: 85  LILMLINMRISELVSETNRDTPWAVITVSLFYFIIGQVTPSNFTDNTIVTSSSNSFSEVY 144

Query: 130 NVE----------------------------------NIGKVLYTQYAYPLEISGFILLL 155
           +++                                   IG ++YT Y+  L IS  ILL+
Sbjct: 145 DLQVDNEILNIVDLQQETASASSKSGDTSLVELPHLGGIGNIMYTNYSLWLIISSVILLV 204

Query: 156 SMIGAIVLMLRHR 168
            M+GAIV+ ++ +
Sbjct: 205 GMVGAIVITIKQK 217


>gi|303237642|ref|ZP_07324202.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           disiens FB035-09AN]
 gi|302482094|gb|EFL45129.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           disiens FB035-09AN]
          Length = 179

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 8/172 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+   V+ +  + +  +L+F     AGL+ LL   F+    + +Y G 
Sbjct: 5   IIFAILAVVILGSAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAAQISIYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           + V ++F I ++          +   KR  L      I A  ++       VF+    ++
Sbjct: 65  ITVMYIFAIQLVSKRTLQGLSERWLGKRTLLAGIIALIGAGTVLGVFVKNKVFAELVSIN 124

Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170
               +   ++ IGK L +     Y  P E     LL  +IG +V++    ++
Sbjct: 125 ATSTEVP-MQVIGKNLMSADKYGYVLPFEFISVFLLACIIGGLVILNNRNKE 175


>gi|289474449|gb|ADC97837.1| NADH dehydrogenase subunit 6 [Corallium secundum]
          Length = 154

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGTHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLR---------HRRDIKRQDISKQLESN 183
           L++M+GAI+L  +         H     RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPSLYDSHVETRSRQDLFLQISRK 152


>gi|302536207|ref|ZP_07288549.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sp. C]
 gi|302445102|gb|EFL16918.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sp. C]
          Length = 212

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 2/162 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L     + ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++Y+G
Sbjct: 29  EIAFLLVGLATLGAAVITVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYLG 88

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  +   A   +V        +   +L   
Sbjct: 89  SVVVLLLFGLMLTKAPIGRSPDADSGNRWVALGVAGAAGAALVWVVADAFRTTWIDLDGP 148

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                + +  G++L+  +  P E    +LL ++IGAIVL  R
Sbjct: 149 AQ--GSTKVSGEILFQHWVLPFEALSVLLLAALIGAIVLSRR 188


>gi|292385516|gb|ADE22060.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis]
 gi|292385520|gb|ADE22063.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis]
          Length = 311

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI   S+
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVISS 110


>gi|145592967|ref|YP_001157264.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora
           tropica CNB-440]
 gi|145302304|gb|ABP52886.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora
           tropica CNB-440]
          Length = 187

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 5/147 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M            +A+ S  L V  R+ + +   L+      AG++L+L AE VA + ++
Sbjct: 1   MTAADALLLALGALAVGSGALAVATRHLVRAGLYLVVCLAAVAGMYLVLTAELVAWVQVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGAV+V  LF +M+    I  +    + G+  +   G     L     +   +S    
Sbjct: 61  IYVGAVVVLLLFAVMLTRAPIGASTDLDRPGWPAALIGGGTGLGLAALLVDAYRWS---- 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147
            S  +    + E IG+ ++  +  P E
Sbjct: 117 -SVPLPTAGSAERIGEQIFGSWVLPFE 142


>gi|319412295|gb|ADV41832.1| NADH dehydrogenase subunit 6 [Bigelowiella natans]
          Length = 193

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 13/191 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L +   +IS+ LV+  RN +Y++  L+  F  +A L + +G EF+  + +VVYVGA+ + 
Sbjct: 3   LLAIFTLISATLVLISRNIVYALAFLVTTFFLSAVLLINIGLEFLGYVLIVVYVGAIAIL 62

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-----------FMVFSAE 118
           FLF++M LDI  E     + R   G     +  A       +           F  FS  
Sbjct: 63  FLFVVMTLDITNEELASSQVRNSGGYTSHTVALAFFFFVLWSIYSTAAPIDALFEKFSFI 122

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178
            +    V        + + LYT     L ++G +LL++M+GA++L L   R    QD  K
Sbjct: 123 QDPWVPVLHSGGAGAVAQTLYTHNFLYLFLAGLLLLVAMVGAVLLALPPVRLS--QDSYK 180

Query: 179 QLESNPDNSIV 189
           Q    P  ++ 
Sbjct: 181 QAHRQPAKAVK 191


>gi|313679594|ref|YP_004057333.1| NADH dehydrogenase subunit j [Oceanithermus profundus DSM 14977]
 gi|313152309|gb|ADR36160.1| NADH dehydrogenase subunit J [Oceanithermus profundus DSM 14977]
          Length = 185

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 1/144 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   + I S+   VT++N +++  +L+  F+  A ++  L A+F+  I ++VY GAV+V 
Sbjct: 7   IAGVLLIASALAAVTLKNAVHAGLALVGNFLVLATVYFALEAQFLGWIQIIVYAGAVMVL 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
           FLF+IM+L  D +      +  ++      + A   +  A  F        L+ +   G 
Sbjct: 67  FLFVIMLL-FDAKADVGAGRMPWMRPIAAALAAVFFLALAYAFSGVGPVHPLAEIKLAGG 125

Query: 130 NVENIGKVLYTQYAYPLEISGFIL 153
               +G++LY  + Y + +   +L
Sbjct: 126 LPGPLGQLLYGPWLYVVLLIAVLL 149


>gi|268164103|ref|YP_003288880.1| NADH dehydrogenase subunit 6 [Saccharina coriacea]
 gi|226235426|dbj|BAH47628.1| NADH dehydrogenase subunit 6 [Saccharina coriacea]
 gi|262318413|dbj|BAI48732.1| NADH dehydrogenase subunit 6 [Saccharina coriacea]
          Length = 311

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 51/100 (51%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           + V  LF++MMLD+    +    K+  L      I A  L
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGAFIFAFFL 104


>gi|58045478|gb|AAW65066.1| NADH dehydrogenase subunit 6 [Saccharina gyrata]
          Length = 311

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           + V  LF++MMLD   I+   +  +K+  +LG+       + +I 
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFAFFLSAVIY 109


>gi|57923560|gb|AAW59520.1| NADH dehydrogenase subunit 6 [Pterygophora californica]
 gi|58045448|gb|AAW65051.1| NADH dehydrogenase subunit 6 [Pterygophora californica]
          Length = 311

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVQVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFVLFLIAAIYS 110


>gi|319760608|ref|YP_004124546.1| NADH-quinone oxidoreductase subunit J [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039322|gb|ADV33872.1| NADH-quinone oxidoreductase subunit J [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 189

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 7/174 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + FY+   ++I+++  V+   N ++S+  L+ + ++ +     L A FV  I ++VY
Sbjct: 1   MMVVLFYISGCVSILATICVIFNNNTVHSLLYLVLSLLSVSLNLFSLKASFVGAIEVIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V FLF+IMMLDID        K G         L   L + +  F++  + G + 
Sbjct: 61  AGAIMVLFLFVIMMLDIDSVTINFDNKTGESFLLKKFNLGVSLFMSSLLFVLLYSIGRID 120

Query: 123 RLVFKGNN----VENIGKVLY---TQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                  N    V+ IG  L+    +Y   +EI+  +LL ++I  + +    + 
Sbjct: 121 NCFINIKNGAISVKQIGITLFGGNGEYILVVEIASLLLLGALISVLHIAQESKT 174


>gi|307327970|ref|ZP_07607151.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           violaceusniger Tu 4113]
 gi|306886275|gb|EFN17280.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           violaceusniger Tu 4113]
          Length = 194

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 2/143 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L     + ++ L VT +  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 21  EIAFLLVGIATLGAAVLTVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVG 80

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + + AA ++V        +   EL + 
Sbjct: 81  SVVVLLLFGLMLTKAPIGPSPDADSGNRPAALAVAVAAAGVLVWVVVDAFRTTWIELDKG 140

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
           V     V   G+ L+  +  P E
Sbjct: 141 VQGSTAVS--GESLFRHWVLPFE 161


>gi|268164064|ref|YP_003288829.1| NADH dehydrogenase subunit 6 [Saccharina angustata]
 gi|58045482|gb|AAW65068.1| NADH dehydrogenase subunit 6 [Saccharina angustata]
 gi|226235356|dbj|BAH47625.1| NADH dehydrogenase subunit 6 [Saccharina angustata]
 gi|262318374|dbj|BAI48694.1| NADH dehydrogenase subunit 6 [Saccharina angustata]
          Length = 311

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 51/100 (51%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           + V  LF++MMLD+    +    K+  L      I A  L
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFAFFL 104


>gi|57923584|gb|AAW59538.1| NADH dehydrogenase subunit 6 [Pelagophycus porra]
 gi|58045460|gb|AAW65057.1| NADH dehydrogenase subunit 6 [Pelagophycus porra]
          Length = 311

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 51/106 (48%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFIIIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    L     +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGSLIFCFVLFAAIYS 110


>gi|58045484|gb|AAW65069.1| NADH dehydrogenase subunit 6 [Saccharina sessilis]
          Length = 311

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 51/100 (51%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           + V  LF++MMLD+    +    K+  L      I A  L
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFAFCL 104


>gi|187373198|ref|YP_001876510.1| NADH dehydrogenase subunit 6 [Beauveria bassiana]
 gi|164598942|gb|ABY61760.1| NADH dehydrogenase subunit 6 [Beauveria bassiana]
          Length = 212

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 30/191 (15%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  + S +A++    V+  +NPI S+  LI  F + +   +L G  F+    L+VY+GAV
Sbjct: 17  FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114
            + FLFI+M+++I     +         + FIGIL    +     + +            
Sbjct: 77  SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136

Query: 115 ------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156
                             F         + + +++  IG +LYT Y   L +S  ILLL+
Sbjct: 137 NYNNILPTVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196

Query: 157 MIGAIVLMLRH 167
           M GAI++ ++ 
Sbjct: 197 MTGAIIITIKQ 207


>gi|329765839|ref|ZP_08257405.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137682|gb|EGG41952.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 170

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F   S + I S+   + +R+ IY   +L+      AG FLLL + FVAM  L VY
Sbjct: 1   MADVTFLALSVITIGSAIAALEMRSLIYGSIALMGTLGGIAGFFLLLDSPFVAMFQLAVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VG++ V  LF +M++  ++   +   KR      F+GI    + + A   ++  +  +  
Sbjct: 61  VGSIAVLILFTVMLVKRELIFKKIEDKRRK----FVGIALMLVFMVALGSIIMDSGIKSI 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                  +  NIG    T Y   L +   IL  S+ GA+VL  R 
Sbjct: 117 TTNEPAVDFRNIGADFLTYYWPALILMALILTGSVTGALVLARRE 161


>gi|156122204|gb|ABU50164.1| NADH dehydrogenase subunit 6 [Cordyceps bassiana]
          Length = 212

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 30/194 (15%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  + S +A++    V+  +NPI S+  LI  F + +   +L G  F+    L+VY+GAV
Sbjct: 17  FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114
            + FLFI+M+++I     +         + FIGIL    +     + +            
Sbjct: 77  SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136

Query: 115 ------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156
                             F         + + +++  IG +LYT Y   L +S  ILLL+
Sbjct: 137 NYNNILPTVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196

Query: 157 MIGAIVLMLRHRRD 170
           M GAI++ ++    
Sbjct: 197 MTGAIIITIKQESR 210


>gi|57923548|gb|AAW59511.1| NADH dehydrogenase subunit 6 [Alaria sp. LL02FI]
          Length = 311

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFVFFLIAAIYS 110


>gi|107735872|ref|YP_626459.1| NADH dehydrogenase subunit 6 [Metarhizium anisopliae]
 gi|57904574|gb|AAW58829.1| NADH dehydrogenase subunit 6 [Metarhizium anisopliae]
          Length = 225

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 41/204 (20%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  + S +A++    V+  +NPI S+ SLI  F + +   +L G  F+    L+VY+GAV
Sbjct: 19  FLDIISVIALLFGIAVIVNKNPIASLLSLIGLFGSISVYLILSGLTFIGFSYLIVYIGAV 78

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-------------- 112
            + FLFI+M+L+I     +         + FI IL    +     +              
Sbjct: 79  SILFLFILMLLNIRTSELQSNNVNSIPLALFITILFNYALFQLLPYYMAILNSYNSKLSN 138

Query: 113 ---------------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145
                                      ++F         + + +++  IG +LYT Y   
Sbjct: 139 ILYYLPTSKYSDIIMNTNSNLDIDTHNIMFVTSNSWDGTITETSHISTIGNILYTSYNMW 198

Query: 146 LEISGFILLLSMIGAIVLMLRHRR 169
           L +   ILL+ M+GAI++ ++   
Sbjct: 199 LFLVSIILLVVMVGAIIITIKQET 222


>gi|292385564|gb|ADE22096.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           + V  LF++MMLD+         K+       I +    LI   
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVI 108


>gi|292385556|gb|ADE22090.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           + V  LF++MMLD+         K+       I +    LI   
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVI 108


>gi|268053559|ref|YP_003288918.1| NADH dehydrogenase subunit 6 [Saccharina japonica]
 gi|268053598|ref|YP_003288956.1| NADH dehydrogenase subunit 6 [Saccharina religiosa]
 gi|268053637|ref|YP_003288994.1| NADH dehydrogenase subunit 6 [Saccharina ochotensis]
 gi|268053676|ref|YP_003289071.1| NADH dehydrogenase subunit 6 [Saccharina diabolica]
 gi|226235325|dbj|BAH47633.1| NADH dehydrogenase subunit 6 [Saccharina japonica]
 gi|262318179|dbj|BAI48504.1| NADH dehydrogenase subunit 6 [Saccharina japonica]
 gi|262318218|dbj|BAI48542.1| NADH dehydrogenase subunit 6 [Saccharina religiosa]
 gi|262318257|dbj|BAI48580.1| NADH dehydrogenase subunit 6 [Saccharina ochotensis]
 gi|262318296|dbj|BAI48618.1| NADH dehydrogenase subunit 6 [Saccharina diabolica]
          Length = 311

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 52/100 (52%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSTISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           + V  LF++MMLD+    +    K+  L  F   I A  L
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYFGALIFAVFL 104


>gi|292385513|gb|ADE22058.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis]
          Length = 286

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI   S+
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVISS 110


>gi|292385568|gb|ADE22099.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           + V  LF++MMLD+         K+       I +    LI   
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVI 108


>gi|292385552|gb|ADE22087.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
 gi|292385560|gb|ADE22093.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           + V  LF++MMLD+         K+       I +    LI   
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVI 108


>gi|58045476|gb|AAW65065.1| NADH dehydrogenase subunit 6 [Laminaria ephemera]
          Length = 309

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 57/119 (47%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           + V  LF++MMLD+    +    K+  L      I    LI    +  + S    LS +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLFYLGALIFLVFLIAAIYSKDLQSLMNILSTV 123



 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N++  +K K 
Sbjct: 240 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEKP 295


>gi|289474488|gb|ADC97863.1| NADH dehydrogenase subunit 6 [Sibogagorgia dennisgordoni]
          Length = 153

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 15/158 (9%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRRDI--------KRQDISKQLESN 183
           L++M+GAI+L  +              RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPSLYSHVEIRSRQDLFLQISRK 151


>gi|317123874|ref|YP_004097986.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043]
 gi|315587962|gb|ADU47259.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043]
          Length = 172

 Score = 85.1 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  + + F +   +  + + L VT +  +++   L+ +    AG +++LG E V ++ L+
Sbjct: 1   MTSREIAFLIVGTITALCAILAVTTKQVVHAALWLLVSLGALAGAYVVLGQELVGIVQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGA++V  LF +M+    I          +       +  A   + A+  +   A   
Sbjct: 61  VYVGAIVVLVLFALMLTRAPIGRHSEIDTPRWERVLASALGGATTALLAAVLLPMFASAR 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147
           L+           IG+ ++  + +P E
Sbjct: 121 LAEDAPATP---AIGEAIFGTWVWPFE 144


>gi|328950040|ref|YP_004367375.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450364|gb|AEB11265.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Marinithermus
           hydrothermalis DSM 14884]
          Length = 187

 Score = 85.1 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           SLF  +   + I+++  VVT+RN +++  +L   F+  A +++ L A F+  I ++VY G
Sbjct: 2   SLFDLVAGLLLILTAVAVVTLRNAVHAALALAGNFLVLAAVYMALDARFLGWIQVIVYAG 61

Query: 65  AVIVFFLFIIMML--DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           A++V FLF+IM+L         +P             +L   L    + F    +  E +
Sbjct: 62  AIMVLFLFVIMLLLAARADTGVDPVPSLRPFAGVVGVLLLVGLGYAVTTFEPVQSLVETA 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEIS 149
            L   G   + +G+ LY  + Y +E+ 
Sbjct: 122 PL-LAGGTAQVVGEALYGPWLYAVELI 147


>gi|197935768|ref|YP_002213611.1| NADH dehydrogenase subunit 6 [Cordyceps brongniartii]
 gi|156122225|gb|ABU50184.1| NADH dehydrogenase subunit 6 [Cordyceps brongniartii]
          Length = 212

 Score = 85.1 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 30/191 (15%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  + S +A++    V+  +NPI S+  LI  F + +   +L G  F+    L+VY+GAV
Sbjct: 17  FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114
            + FLFI+M+++I     +         + FIGIL    +     + +            
Sbjct: 77  SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136

Query: 115 ------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156
                             F         + + +++  IG +LYT Y   L +S  ILLL+
Sbjct: 137 NYNNILPIVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196

Query: 157 MIGAIVLMLRH 167
           M GAI++ ++ 
Sbjct: 197 MTGAIIITIKQ 207


>gi|289474443|gb|ADC97833.1| NADH dehydrogenase subunit 6 [Corallium laauense]
          Length = 154

 Score = 85.1 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   S ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYISSPVIGSKTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183
           L++M+GAI+L  +               RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRK 152


>gi|292385524|gb|ADE22066.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae]
 gi|292385528|gb|ADE22069.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae]
 gi|292385532|gb|ADE22072.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae]
 gi|292385536|gb|ADE22075.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae]
          Length = 311

 Score = 85.1 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFIFFLIAVIYS 110


>gi|309812378|ref|ZP_07706133.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dermacoccus
           sp. Ellin185]
 gi|308433683|gb|EFP57560.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dermacoccus
           sp. Ellin185]
          Length = 170

 Score = 85.1 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 3/173 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +    F     ++  S+   VT R  +++   L       +G +L+LGAE VA++ L+
Sbjct: 1   MTVHDALFACLGLISAASAICAVTTRQIVHAALWLTVCLATLSGCYLVLGAELVALVQLL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V  LF +M+    I  +             + I AA   +  S F+   +   
Sbjct: 61  VYVGAVVVLVLFAVMLTRAPIGRSGDHDAPIMTRMAALVIAAATGGLLFSAFV---SAFG 117

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
             R         ++ + L+ ++A+P E+   +LL +++GA+ ++   R    R
Sbjct: 118 TRRARIDSGTTTDLAQNLFGRFAWPFEVVSLVLLSALVGALAMIGSRRSGGGR 170


>gi|268053715|ref|YP_003289122.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis]
 gi|226235329|dbj|BAH47635.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis]
 gi|262318335|dbj|BAI48656.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis]
          Length = 311

 Score = 85.1 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 53/100 (53%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS F L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGFYLVLLFFLGSTISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           + V  LF++MMLD+    +    K+  L  F   I A  L
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYFGALIFAVFL 104


>gi|289474446|gb|ADC97835.1| NADH dehydrogenase subunit 6 [Corallium sp. USNM 1075800]
          Length = 154

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183
           L++M+GAI+L  +               RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRK 152


>gi|18860372|ref|NP_569688.1| NADH dehydrogenase subunit 6 [Psilotum nudum]
 gi|75248907|sp|Q8WHX6|NU6C_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|18389525|dbj|BAB84277.1| NADH dehydrogenase ND6 subunit [Psilotum nudum]
          Length = 188

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 9/137 (6%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           S  V+ + + + S FSL   F++ + L+L+L A+FVA   +++YVGA+ V  +F +M++ 
Sbjct: 23  SMGVILLNDIVQSAFSLGLTFISISLLYLVLNADFVAAAQVLIYVGAINVLIVFSVMLIQ 82

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL--------VFKGNN 130
              +  +    R   G+    I+   L +   + ++ ++  ++  +            +N
Sbjct: 83  KPHKNEDLSTSRN-TGNNITLIVCTSLFLFLVSIILDTSWSQIYSIKKSTKIFEPILKSN 141

Query: 131 VENIGKVLYTQYAYPLE 147
           V+ IG  L T++  P E
Sbjct: 142 VQLIGSQLLTEFLLPFE 158


>gi|239943532|ref|ZP_04695469.1| putative NADH dehydrogenase chain J [Streptomyces roseosporus NRRL
           15998]
 gi|239989986|ref|ZP_04710650.1| putative NADH dehydrogenase chain J [Streptomyces roseosporus NRRL
           11379]
 gi|291446999|ref|ZP_06586389.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces roseosporus NRRL
           15998]
 gi|291349946|gb|EFE76850.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces roseosporus NRRL
           15998]
          Length = 224

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 2/143 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L     + ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 26  EIAFLLVGLATLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 85

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +++V  LF +M+    I  +          +  + + +A  +V        +   +L   
Sbjct: 86  SIVVLLLFGLMLTRAPIGRSPDADSGNRWVALGVALASAAALVWVVVDAFRTTWIDLDGP 145

Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147
                +    G  L+  +  P E
Sbjct: 146 AQ--GSTRVTGAFLFRNWVLPFE 166


>gi|58045470|gb|AAW65062.1| NADH dehydrogenase subunit 6 [Laminaria digitata]
          Length = 311

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGAIIFLFFLIAAIYS 110



 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N+I  +K KS
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAIFSIKEKS 297


>gi|21450018|ref|NP_659280.1| NADH dehydrogenase subunit 6 [Laminaria digitata]
 gi|21425343|emb|CAC87976.1| NADH dehydrogenase subunit 6 [Laminaria digitata]
          Length = 311

 Score = 84.7 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGAIIFLFFLIAAIYS 110



 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N+I  +K KS
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAIFSIKEKS 297


>gi|292385540|gb|ADE22078.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia]
          Length = 311

 Score = 84.7 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVIYS 110


>gi|292385437|gb|ADE22001.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 84.7 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFWGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           + V  LF++MMLD+  IE     KK+ FL    +      + V  S
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110


>gi|58045434|gb|AAW65044.1| NADH dehydrogenase subunit 6 [Chorda filum]
          Length = 311

 Score = 84.7 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 53/106 (50%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + + L +F+ +     V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIYILITFLGVCLGIKVTSTQNPVYSGLYLVLLFFLGSAIAFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+  L        A  LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIEKPWSAKKKRLLYLVGVFFAFGLISVMLS 110


>gi|57923552|gb|AAW59514.1| NADH dehydrogenase subunit 6 [Lessoniopsis littoralis]
 gi|58045446|gb|AAW65050.1| NADH dehydrogenase subunit 6 [Lessoniopsis littoralis]
          Length = 311

 Score = 84.7 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      +    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALMFVLFLIAAIYS 110


>gi|292385548|gb|ADE22084.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia]
          Length = 311

 Score = 84.7 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVIYS 110


>gi|292385429|gb|ADE21995.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
 gi|292385433|gb|ADE21998.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 84.7 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFLLIATLGGTLGVKVTSTQNPVYSGLYLVLLFFWGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           + V  LF++MMLD+  IE     KK+ FL    +      + V  S
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110


>gi|58045486|gb|AAW65070.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 84.7 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           + V  LF++MMLD+  IE     KK+ FL    +      + V  S
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110


>gi|292385441|gb|ADE22004.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 84.3 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           + V  LF++MMLD+  IE     KK+ FL    +      + V  S
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110


>gi|289474458|gb|ADC97843.1| NADH dehydrogenase subunit 6 [Paracorallium sp. USNM 1089600]
          Length = 154

 Score = 84.3 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++       +P K     
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQ------QPNKVYYQD 54

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
            S F+ +    +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +L
Sbjct: 55  HSHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183
           L++M+GAI+L  +               RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRK 152


>gi|58045462|gb|AAW65058.1| NADH dehydrogenase subunit 6 [Egregia menziesii]
          Length = 311

 Score = 84.3 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSLISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L    + I    L     +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGVLIFVFFLSAIIYS 110


>gi|58045468|gb|AAW65061.1| NADH dehydrogenase subunit 6 [Laminaria sinclairii]
          Length = 311

 Score = 84.3 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFIIIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSVKKKRLLYLGAIIFIFFLIAAIYS 110



 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N+I  +K KS
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAIFSIKEKS 297


>gi|317123854|ref|YP_004097966.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043]
 gi|315587942|gb|ADU47239.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043]
          Length = 304

 Score = 84.3 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 75/154 (48%), Gaps = 7/154 (4%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           +S FF++ + +A+ ++  +V  R  +++   +          +L+  A+F+ ++ + VY 
Sbjct: 6   ESAFFWVLAPLAVAAALALVFARKAVHAAIGMAITMTILGVFYLMQKADFLGVVQVFVYT 65

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILAAELI-VCASNFMVFS 116
           GAV++ FLF+IM++ +D   +     +G       L    IG+L++ +         V S
Sbjct: 66  GAVMMLFLFVIMLVGVDSSDSLVETIKGHRWLSIILAVGLIGLLSSTIGSASFDEATVQS 125

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISG 150
              +L     +  N+  + ++++ QY +  E++ 
Sbjct: 126 GIDKLEASNAQTGNITGMAELIFGQYVWIFEVTS 159


>gi|157736567|ref|YP_001489250.1| NADH-quinone oxidoreductase, J subunit [Arcobacter butzleri RM4018]
 gi|315635730|ref|ZP_07890993.1| NADH-quinone oxidoreductase subunit J [Arcobacter butzleri JV22]
 gi|157698421|gb|ABV66581.1| NADH-quinone oxidoreductase, J subunit [Arcobacter butzleri RM4018]
 gi|315480027|gb|EFU70697.1| NADH-quinone oxidoreductase subunit J [Arcobacter butzleri JV22]
          Length = 173

 Score = 84.3 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 1/145 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F   +F AI  +  ++  +NP++S   ++   ++ AG+F LL A F+ ++ ++VY
Sbjct: 1   MVDLIFIALAFFAITGAIAMIVYKNPMFSALGVLITMLSVAGMFALLNATFLFLVQIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++   LFI+M L+I  E       +  L +    ++   L V     +    + + +
Sbjct: 61  AGAIMTLILFILMFLNIKEEDLPHEPNKYKLIAL-GAVIMIPLNVLVLKAVSNLPQKDFN 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLE 147
            +     +++ +G  LY  +    E
Sbjct: 120 IVQGDFGDIKPVGIELYNHWIVAFE 144


>gi|292385461|gb|ADE22019.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata]
 gi|292385465|gb|ADE22022.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata]
          Length = 311

 Score = 84.3 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           + V  LF++MMLD+  IE     KK+ FL    +      + V  S
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110


>gi|58045480|gb|AAW65067.1| NADH dehydrogenase subunit 6 [Saccharina latissima]
 gi|226235350|dbj|BAH47623.1| NADH dehydrogenase subunit 6 [Laminaria sachalinensis]
          Length = 311

 Score = 84.3 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 48/91 (52%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5  IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF 96
          + V  LF++MMLD+    +    K+  L   
Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYL 95


>gi|58045472|gb|AAW65063.1| NADH dehydrogenase subunit 6 [Laminaria yezoensis]
 gi|226235344|dbj|BAH47621.1| NADH dehydrogenase subunit 6 [Laminaria yezoensis]
          Length = 311

 Score = 84.3 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGGLIFLFFLIAAIYS 110



 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N++  +K KS
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEKS 297


>gi|58045488|gb|AAW65071.1| NADH dehydrogenase subunit 6 [Lessonia corrugata]
 gi|292385505|gb|ADE22052.1| NADH dehydrogenase subunit 6 [Lessonia corrugata]
 gi|292385509|gb|ADE22055.1| NADH dehydrogenase subunit 6 [Lessonia corrugata]
          Length = 311

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLIFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           + V  LF++MMLD+         K+       I +    LI   
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVI 108


>gi|292385445|gb|ADE22007.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
 gi|292385449|gb|ADE22010.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 50/106 (47%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +     I    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFFYLGILLFFFFSIAVIYS 110


>gi|305666191|ref|YP_003862478.1| NADH dehydrogenase I subunit J [Maribacter sp. HTCC2170]
 gi|88707689|gb|EAQ99930.1| NADH dehydrogenase I, chain J [Maribacter sp. HTCC2170]
          Length = 174

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 9/156 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + FY+ + + I+ +   VT R  + SV  L+F     AG++ L+   F+A I L VY
Sbjct: 1   MERIIFYVLAIIMIVFAIASVTSRKMLRSVIYLLFVLCGIAGIYFLIDYNFLAAIQLTVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            G +IV  +F ++++       E  K    + +    +L   + +      ++  E  + 
Sbjct: 61  AGGIIVLIIFSVLLVHHIEMELEIAKTSKQILTAVACLLGLGVFLT----TIYGHEFNVV 116

Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILL 154
                     +IG  L +     +  P E+   +LL
Sbjct: 117 ENALT-TTTADIGAKLLSYGEGGFILPFEVISVLLL 151


>gi|292385607|gb|ADE22128.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 50/106 (47%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I      LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILFFVFFLIAVIYS 110


>gi|292385469|gb|ADE22025.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata]
          Length = 311

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           + V  LF++MMLD+  IE     KK+ FL    +      + V  S
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110


>gi|84508621|ref|YP_448668.1| NADH dehydrogenase subunit 6 [Desmarestia viridis]
 gi|45925653|gb|AAS79054.1| NADH dehydrogenase subunit 6 [Desmarestia viridis]
          Length = 311

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 50/106 (47%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F   + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFIFIAILGGSLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+  L           L+V   N
Sbjct: 65  IAVLVLFVVMMLDVKAIENPWSAKKKRLLYISALFFGWILLVVGYN 110


>gi|115304399|ref|YP_762704.1| NADH:ubiquinone oxidoreductase subunit 6 [Ustilago maydis]
 gi|121924030|sp|Q0H8W8|NU6M_USTMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|72256229|gb|AAZ67019.1| NADH:ubiquinone oxidoreductase subunit 6 [Ustilago maydis]
          Length = 226

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 4/126 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +      +  A++S  LV+T +NP+ SV  LI  FVN AG  +LLG  F+ +  L+VY
Sbjct: 1   MNNFLLDFLALGAVLSGILVITSKNPVISVLFLISVFVNVAGYLVLLGVGFIGISYLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           +GAV V FLF+IMML++ +     V     K   L +    +L  EL+    +F  F   
Sbjct: 61  IGAVTVLFLFVIMMLNLQLTELSAVGNEYTKNLPLATIIGSLLLFELVSVVPSFDGFYQL 120

Query: 119 GELSRL 124
              + +
Sbjct: 121 NSTTTI 126


>gi|156494382|ref|YP_001427408.1| NADH dehydrogenase subunit 6 [Phaeosphaeria nodorum SN15]
 gi|156106289|gb|ABU49452.1| NADH dehydrogenase subunit 6 [Phaeosphaeria nodorum SN15]
          Length = 198

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 16/179 (8%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L   +AI+   LV+  +NPI SV  LI  F+  +   +L G  F+ +  L+VY+GAV + 
Sbjct: 20  LLYLIAILLGILVIISKNPIVSVLFLIGLFLCISVYLILTGLNFIGLSYLLVYIGAVSIL 79

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS------------- 116
           FLFI+M++++ I             +  +G      +     +MV +             
Sbjct: 80  FLFILMLINVRISELLIDSINSIPLAILVGSFFNYFVNNVLPYMVMTNNLLYHFSIKKNL 139

Query: 117 ---AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172
                      + + +++ +IG +LY  Y+  L I+  ILLL+M+GAIV+ L+ +  +K
Sbjct: 140 TNVTSVSWDGYLAETSHITSIGNILYGHYSIWLIITSIILLLAMVGAIVITLKPQTHVK 198


>gi|289474467|gb|ADC97849.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora]
          Length = 154

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +           
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKADYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +     ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYISDPVIGYRTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183
           L++M+GAI+L  +               RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPSLYESHVEIRSRQDLFLQISRK 152


>gi|288801148|ref|ZP_06406604.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332082|gb|EFC70564.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 174

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 72/171 (42%), Gaps = 7/171 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+ + VT +  + +   L+F     AG++ LLG  F+    + +Y G 
Sbjct: 5   IMFCILAVIILGSAIVCVTTKRIMRAATFLLFVLFGVAGIYFLLGYTFLGAAQISIYAGG 64

Query: 66  VIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           + + ++F I ++       + E    +  LG   + ++   + +       F        
Sbjct: 65  ITMVYIFAIQLVSKRTLQGLQESFSLKKSLGGVLVALVGLVMFLVIFAKNEFIGNVVDLG 124

Query: 124 LVFKGNNVENIGKVLY----TQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
           L  + + +  +G  L      QYA P E+    LL  +IG +++  +  + 
Sbjct: 125 LANEVS-MHEVGTTLIGTDKGQYALPFELISVFLLACIIGGVMIARKEDKK 174


>gi|289474464|gb|ADC97847.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora]
 gi|289474470|gb|ADC97851.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora]
 gi|289474491|gb|ADC97865.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora]
          Length = 154

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +     ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYISDPVIGYRTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183
           L++M+GAI+L  +               RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRK 152


>gi|218660274|ref|ZP_03516204.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium
           etli IE4771]
          Length = 121

 Score = 83.5 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 1/122 (0%)

Query: 48  LLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +L A F+A+I + VYVGA++V FLF+IMM+D+   V +     G L +  + ++    ++
Sbjct: 1   MLEAPFLAVIQIFVYVGAIMVLFLFVIMMIDVREAVLQRFLPGGNLLALMLVVVLGLEML 60

Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               +    +  E    +  G+ +  +   L+  Y  P EI+  ILL +++GAIVL  + 
Sbjct: 61  VLVLWSDRFSVIE-PVAMRGGDQIRQLSTTLFADYLLPFEIASVILLAALVGAIVLARKE 119

Query: 168 RR 169
           + 
Sbjct: 120 QE 121


>gi|58045474|gb|AAW65064.1| NADH dehydrogenase subunit 6 [Laminaria solidungula]
          Length = 311

 Score = 83.5 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGSLIFIFFLIAAIYS 110



 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N++  +K K 
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEKP 297


>gi|57923544|gb|AAW59508.1| NADH dehydrogenase subunit 6 [Alaria sp. LL01AP]
 gi|57923568|gb|AAW59526.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia]
 gi|58045458|gb|AAW65056.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia]
          Length = 311

 Score = 83.5 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFIIIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLVFLIFVLFLISAIYS 110



 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N++  +K K 
Sbjct: 242 ILYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFFIKEKP 297


>gi|289474455|gb|ADC97841.1| NADH dehydrogenase subunit 6 [Paragorgia aotearoa]
          Length = 154

 Score = 83.5 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRR---------DIKRQDISKQLESN 183
           L++M+GAI+L  +               RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPPLYHPHVGTHSRQDLFLQISRK 152


>gi|161527790|ref|YP_001581616.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Nitrosopumilus maritimus SCM1]
 gi|160339091|gb|ABX12178.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Nitrosopumilus maritimus SCM1]
          Length = 170

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F   + + I S+   + +R+ +Y   +L+      AG F LL A FVA+  L VY
Sbjct: 1   MADAAFLALTVITIGSAIAALELRSLVYGSIALMGTLGGIAGFFFLLDAPFVALFQLAVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VG++ V  LF +M++  ++   +   KR      F GI    +I+ A   +   +  +  
Sbjct: 61  VGSIAVLILFTVMLVKRELIFKKIEDKRRK----FAGIGLMLVIMVALGAVFLDSGIKTI 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                  +  +IG    T Y   L + G IL  S+ GA+VL  R 
Sbjct: 117 TTDEPPVDFRDIGTDFVTYYWPALILMGLILAGSVTGALVLAKRE 161


>gi|189220226|ref|YP_001940866.1| NADH dehydrogenase subunit J [Methylacidiphilum infernorum V4]
 gi|189187084|gb|ACD84269.1| NADH dehydrogenase subunit J [Methylacidiphilum infernorum V4]
          Length = 135

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 2/134 (1%)

Query: 33  FSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92
            +L+   ++ AGLF+LLGA F+A + ++VY GAV+V FLFIIM+LD+  E     +  G 
Sbjct: 1   MNLVLMILSIAGLFVLLGAYFLAAVQVLVYAGAVMVLFLFIIMLLDLKAEEQATMRPLGM 60

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152
           LG F + +L       A   M  S   E   L   G  ++ +G++L+  Y+   E+ G +
Sbjct: 61  LGGFLLVLLFGVGFSLAVKAMDSSLSKEQKALGVGG--IKALGELLFANYSLAFEVVGLL 118

Query: 153 LLLSMIGAIVLMLR 166
           LL+SM+G I+L  +
Sbjct: 119 LLISMVGVIILSKK 132


>gi|289474482|gb|ADC97859.1| NADH dehydrogenase subunit 6 [Paragorgia wahine]
          Length = 154

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +           
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKADYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRR---------DIKRQDISKQLESN 183
           L++M+GAI+L  +               RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPPLYHPHVGTHSRQDLFLQISRK 152


>gi|303248407|ref|ZP_07334667.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           fructosovorans JJ]
 gi|302490205|gb|EFL50123.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           fructosovorans JJ]
          Length = 173

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 5/152 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M      FYL S + +I++ L  T RNP+++V   +  F+  AGLF++LGA    ++ +V
Sbjct: 1   MTALGALFYLLSAVLLIAAGLAATRRNPVHAVCCAVVTFIATAGLFVVLGAPLPGVLEVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V FLFIIM+L + + V      R  +           L        V      
Sbjct: 61  VYAGAIMVLFLFIIMLLGLPVGVGAVPAARLVVPGVIAAATLVALFALIGVDPVGRVMLP 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152
            +           +G VL+  Y   +E    I
Sbjct: 121 AALATPA-----AVGTVLFGTYWLAVEAVSII 147


>gi|319738248|emb|CBJ18024.1| NADH dehydrogenase subunit 6 [Ectocarpus siliculosus]
          Length = 305

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + S +  I    V + +NP+YS   L+  F   +G+  LLG EF+A++ L+VY GA
Sbjct: 5   IIFIIISCLGAILGVKVTSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+  L           LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIENPWSAKKKRLVYAIGLTFLFFLIAVGWS 110



 Score = 52.3 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVK 194
           +LY+ YA  L I+G ILL++M+GAI L L+       + + +QL     N++  +K K
Sbjct: 236 LLYSTYAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEK 290


>gi|289474476|gb|ADC97855.1| NADH dehydrogenase subunit 6 [Paragorgia arborea]
          Length = 154

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183
           L++M+GAI+L  +               RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPSLYNPHVGTHSRQDLFLQISRK 152


>gi|289474461|gb|ADC97845.1| NADH dehydrogenase subunit 6 [Paragorgia regalis]
 gi|289474485|gb|ADC97861.1| NADH dehydrogenase subunit 6 [Paragorgia yutlinux]
          Length = 154

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRR---------DIKRQDISKQLESN 183
           L++M+GAI+L  +               RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPPLYNPHVGTHSRQDLFLQISRK 152


>gi|57923564|gb|AAW59523.1| NADH dehydrogenase subunit 6 [Undaria pinnatifida]
 gi|58045452|gb|AAW65053.1| NADH dehydrogenase subunit 6 [Undaria pinnatifida]
          Length = 311

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 53/109 (48%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + F L   +  I    V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY
Sbjct: 2   VNPIIFILIITLGSILGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            GA+ V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 62  AGAIAVLVLFVVMMLDVKAIESPWSAKKKRLLYLSSLIFVIFLIAAIYS 110


>gi|325857141|ref|ZP_08172431.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           denticola CRIS 18C-A]
 gi|327313383|ref|YP_004328820.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           denticola F0289]
 gi|325483204|gb|EGC86182.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           denticola CRIS 18C-A]
 gi|326944974|gb|AEA20859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           denticola F0289]
          Length = 179

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 73/172 (42%), Gaps = 7/172 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F + + + + S+   V+ +  + +  +L+F     AGL+ LL   F+  + + +Y G 
Sbjct: 5   IMFAVLAVVILASAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAVQISIYAGG 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           + + ++F I ++          +   KR FL +         + V      +  +     
Sbjct: 65  ITMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAAIALAGLGTVTVVLLKNELIRSTVVNG 124

Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             + K  +++ +G+ L +     Y  P E     LL  +IG +V++   +++
Sbjct: 125 DALSKEISMDVVGQTLMSADKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 176


>gi|197245037|dbj|BAG69143.1| NADH dehydrogenase subunit 6 [Aureophycus aleuticus]
          Length = 311

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILITTLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L      I    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWFAKKKRLLYLGALIFVFFLIAVIYS 110



 Score = 48.1 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+G I L L+       + + +QL     N++  +K K 
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGXISLTLQKN---CPESLYRQLGRESKNAVFSIKEKP 297


>gi|302559056|ref|ZP_07311398.1| NADH dehydrogenase subunit [Streptomyces griseoflavus Tu4000]
 gi|302476674|gb|EFL39767.1| NADH dehydrogenase subunit [Streptomyces griseoflavus Tu4000]
          Length = 210

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 2/162 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L   +   ++ + VT R  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 31  EIAFLLVGLVTFGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 90

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + + AA  +V        +   +L   
Sbjct: 91  SVVVLLLFGLMLTRAPIGRSPDADSGNRRVALAVAVAAAGALVWVVVDAFRTTWIDLDGA 150

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
                + E  G  L+  +  P E    +LL +++GAIVL  R
Sbjct: 151 PA--GSTEVTGASLFQNWVLPFEALSVLLLAALVGAIVLSRR 190


>gi|320105158|ref|YP_004180749.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Isosphaera
           pallida ATCC 43644]
 gi|319752440|gb|ADV64200.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Isosphaera
           pallida ATCC 43644]
          Length = 325

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 53/214 (24%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + ++F  +FS  A+ ++  ++  R+P++S        ++ AGLFLL GA+F+A  T++VY
Sbjct: 66  ISAVFHTVFSLSAVAAAAAMIASRDPVHSALWFAVTVLSTAGLFLLAGAQFLAAGTVIVY 125

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
            GA+IV FLF+IM+          R  R    + F + +L   L+            G  
Sbjct: 126 AGAIIVMFLFVIMLAQQQGRATYDRMSRNPKAAVFGVSLLLWTLLYAILAARSAPPLGPS 185

Query: 122 SRLVF----------------------------------------------------KGN 129
                                                                       
Sbjct: 186 PEATAPLEARSAAVARGAAGSSDPADRIAQAALAPTARLAPTISVEQMLATLPAQANPPP 245

Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
           +V  +G  LY+ +   + ++  +L +SM+GA+ +
Sbjct: 246 HVAALGGTLYSDHVVSVLVAAALLFVSMVGAVAI 279


>gi|299737838|ref|XP_002910006.1| NADH dehydrogenase subunit 6 [Coprinopsis cinerea okayama7#130]
 gi|298402998|gb|EFI26512.1| NADH dehydrogenase subunit 6 [Coprinopsis cinerea okayama7#130]
          Length = 250

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +++LF  L +F  ++SS L +T +NP+ SV  LI  FV+AAG  +L+G +F+ +  +V
Sbjct: 1   MNIKTLFINLLAFGTLLSSILTITAKNPVISVIFLISTFVSAAGYLILIGIQFLGLSYIV 60

Query: 61  VYVGAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +YVGA+ V FLF+IMM++I   DI     +  +    +  IG +   +I       +++ 
Sbjct: 61  IYVGAIAVLFLFVIMMINIKLTDILETGSQYTKNLPIAIIIGSVFLFIIFTIVPLNIYNV 120

Query: 118 EG 119
             
Sbjct: 121 PS 122


>gi|146307443|ref|YP_001187908.1| NADH dehydrogenase subunit J [Pseudomonas mendocina ymp]
 gi|145575644|gb|ABP85176.1| NADH dehydrogenase subunit J [Pseudomonas mendocina ymp]
          Length = 169

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 1/138 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  + +A+ ++  VVT  NP++++  LI + +  + +F  LGA F   + ++VY G
Sbjct: 2   EFAFYFAAGVAVAATVGVVTNTNPVHALLYLIVSLLAVSMVFFALGAPFAGALEIIVYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++    A  ++++      +IG      ++      V  A+   + +
Sbjct: 62  AIMVLFVFVVMMLNL-GPAAVDQERKWLAPGIWIGPALLSALLLGQLLYVLLAQPGDATI 120

Query: 125 VFKGNNVENIGKVLYTQY 142
                  + +G  L+  Y
Sbjct: 121 GHASVEAKAVGISLFGPY 138


>gi|289474473|gb|ADC97853.1| NADH dehydrogenase subunit 6 [Paragorgia arborea]
          Length = 154

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  +   +I    + +  S +   + ++    N+  IG  LYT Y   + ++  +L
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVL 113

Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183
           L++M+GAI+L  +               RQD+  Q+   
Sbjct: 114 LVAMVGAILLAKQPNTPSLYNPHVGIHSRQDLFLQISRK 152


>gi|146221440|gb|ABQ11840.1| NADH dehydrogenase subunit 6 [Iphiteon panicea]
          Length = 176

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 30  YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89
           YS   LI  F+N + LF+LL  EF+A++ ++VY GA+ + FLF IMML++  +       
Sbjct: 24  YSAVWLILTFINISLLFILLEIEFIAILLIIVYAGAIAILFLFAIMMLNLHTKEQTSDST 83

Query: 90  RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
                   I       ++              +  +   +N E I  +LY+ Y     IS
Sbjct: 84  ----HLLPINATIIISVIIIGINSSSHKLYNTTPQIKTLDNTETISSLLYSNYTPWFLIS 139

Query: 150 GFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179
             ILL+SMI  IV++ + + +  +Q + KQ
Sbjct: 140 SIILLISMIATIVIIQKEQINSIKQQLFKQ 169


>gi|292385477|gb|ADE22031.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
          Length = 311

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 46/78 (58%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          ++ + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY
Sbjct: 2  VEPIIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVY 61

Query: 63 VGAVIVFFLFIIMMLDID 80
           GA+ V  LF++MMLD+ 
Sbjct: 62 AGAIAVLVLFVVMMLDVK 79


>gi|58045492|gb|AAW65073.1| NADH dehydrogenase subunit 6 [Cymathaere triplicata]
          Length = 311

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +  +    V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGVLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+    +    K+  L           L+    +
Sbjct: 65  IAVLVLFVVMMLDVKAVESPWSAKKKRLLYLGALTFVFFLLATVYS 110



 Score = 51.2 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N+I  +K K 
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAIFSIKEKP 297


>gi|58045464|gb|AAW65059.1| NADH dehydrogenase subunit 6 [Eisenia arborea]
          Length = 311

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 51/106 (48%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F   +    +    V++ +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFIFIATFGGMLGIKVISTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+  L      I    L+    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSAKKKRLLYCGALIFLFFLVAVVYS 110



 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N++  +K K 
Sbjct: 242 ILYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEKP 297


>gi|94265857|ref|ZP_01289587.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta
           proteobacterium MLMS-1]
 gi|94269627|ref|ZP_01291516.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta
           proteobacterium MLMS-1]
 gi|93451145|gb|EAT02072.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta
           proteobacterium MLMS-1]
 gi|93453593|gb|EAT03989.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta
           proteobacterium MLMS-1]
          Length = 173

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 3/166 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +  + F+ F  + I  + +     N I +V  L    V  AG++  LG+ F+A++ +++Y
Sbjct: 10  LAGVVFFGFILLIIFGALVATNAVNLIRAVCGLALCLVGVAGIYYFLGSPFLALMQILIY 69

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV V  +F +M+       A  R  R    +     L   L+      + F       
Sbjct: 70  AGAVCVAIVFAVMLA---EPAAVQRFHRSHPLAGPGAALTGALMAWGLAALAFKTSWPSP 126

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                   +E +G+ + T +    E+   ILLL+++G++VL  R R
Sbjct: 127 PQRLNDGALEEVGRAMMTTFVVSFELISLILLLAIVGSLVLARRGR 172


>gi|315465332|emb|CBQ72567.1| NADH:ubiquinone oxidoreductase chain 6 [Sporisorium reilianum]
          Length = 226

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 90/210 (42%), Gaps = 44/210 (20%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +      +  AI+S  LV+T +NP+ SV  LI  FVN AG  +LLG  F+ +  L+VY
Sbjct: 1   MNNFLLDFLALGAILSGILVITSKNPVISVLFLISVFVNVAGYLVLLGVGFIGISYLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           VGAV V FLF+IMML++ +     V     +   L +    +L  EL+    +F  F   
Sbjct: 61  VGAVTVLFLFVIMMLNLQLTELSAVGNEYTQNLPLATILGSLLLFELVSVVPSFDGFYQL 120

Query: 119 GELSRLVFKGN----------------------------------------NVENIGKVL 138
              + +                                              ++ IG+VL
Sbjct: 121 NSTATIFKSLGVGILNWFNSLSLGVENTFAFAEVNQTFNSFAADTQFATFLQIQTIGQVL 180

Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           YT  A  L +S  ILLL+M+G I L +  +
Sbjct: 181 YTNGALWLIVSSLILLLAMVGPITLSMNKK 210


>gi|297565705|ref|YP_003684677.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Meiothermus
           silvanus DSM 9946]
 gi|296850154|gb|ADH63169.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus
           silvanus DSM 9946]
          Length = 185

 Score = 82.0 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 7/132 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           VVT RN +++  +LI  F+  AG+++ L A F+ M+ ++VY GA++V FLF+IM+L    
Sbjct: 19  VVTARNAVHAALALIANFLVLAGVYVALDARFLGMVQVIVYAGAIVVLFLFVIMLLSAAQ 78

Query: 82  EV--AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
                 P  +   + +     LA  L++ + N  V    G L+  +      + IG VLY
Sbjct: 79  AEVGINPLSRLTPVAALGALALAVVLMLASRNVPVPPQVGNLNGGLP-----QAIGPVLY 133

Query: 140 TQYAYPLEISGF 151
             + Y L   GF
Sbjct: 134 GPWLYALLAVGF 145


>gi|15616782|ref|NP_239994.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681537|ref|YP_002467922.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682093|ref|YP_002468477.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471218|ref|ZP_05635217.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11133972|sp|P57260|NUOJ_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|25285206|pir||H84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain J [imported] -
           Buchnera sp. (strain APS)
 gi|10038845|dbj|BAB12880.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621826|gb|ACL29982.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624380|gb|ACL30535.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085904|gb|ADP65986.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086477|gb|ADP66558.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087058|gb|ADP67138.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087615|gb|ADP67694.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 170

 Score = 82.0 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY+ SF A++S+F V+  +N +YS+  LI + ++ AG+F  LGA F   + +++Y G
Sbjct: 2   EFVFYVCSFAAVVSTFFVIIQKNAVYSLVYLIISLLSIAGVFFSLGAFFAGSLEVIIYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A+IV F+F+IMML+I  +             +    + + +++ +  + +F    +    
Sbjct: 62  AIIVLFVFVIMMLNISDKYNLEEAHYLKPRFWIGPSILSLILLLSMTYAIFFLRDKKIDG 121

Query: 125 VFKGNNVENIGKVLYTQYAY 144
               +  + +G  L+  Y +
Sbjct: 122 FLIDS--KIVGINLFGPYVF 139


>gi|57923576|gb|AAW59532.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana]
 gi|57923580|gb|AAW59535.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana]
 gi|58045456|gb|AAW65055.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana]
          Length = 311

 Score = 82.0 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           + V  LF++MMLD   I+   +  +K+  +LG+         +I 
Sbjct: 65  IAVLVLFVVMMLDVKAIESPWSAKKKRFLYLGALIFLFFLTAVIY 109



 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N++  VK KS
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSVKEKS 297


>gi|295065782|ref|YP_003587722.1| NADH dehydrogenase subunit 6 [Anomochloa marantoidea]
 gi|251765306|gb|ACT15460.1| NADH dehydrogenase subunit 6 [Anomochloa marantoidea]
          Length = 176

 Score = 82.0 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 10/130 (7%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            NPIYS FSL    V  +  +LL  +  VA+   ++YVGA+ V  L  +M ++      +
Sbjct: 30  TNPIYSAFSLGLVLVCISLFYLLWNSYLVAVAQFLIYVGAINVLILLAVMFVNSSEWFKD 89

Query: 86  PRKKRGFLGSFFIGILAAELIVCAS------NFMVFSAEGELSRLVFKG--NNVENIGKV 137
             +    +G  F  ++   +           ++         +++V +G  NN++ IG  
Sbjct: 90  --QNYWTIGDGFTSLVCTTIPFSLMATIPDTSWYGILWTTRSNQIVEQGLNNNLQQIGIH 147

Query: 138 LYTQYAYPLE 147
           L T +  P E
Sbjct: 148 LATDFYLPFE 157


>gi|302543402|ref|ZP_07295744.1| putative NADH dehydrogenase subunit [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461020|gb|EFL24113.1| putative NADH dehydrogenase subunit [Streptomyces himastatinicus
           ATCC 53653]
          Length = 186

 Score = 81.6 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 3/169 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F L       ++ + VT +  +++   L+ A    A  +LLL AEF+A + +++YVG
Sbjct: 21  EIAFLLVGIATFGAAVITVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVG 80

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V+V  LF +M+    I  +          +  + + AA  +V        +   +L + 
Sbjct: 81  SVVVLLLFGLMLTKAPIGRSPDADSGNRPAALAVAVAAAAALVWVVVDAFRATWIDLDKG 140

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173
           V     V   G+ L+  +  P E    +LL +++GAIVL  R + + KR
Sbjct: 141 VQGSTAVS--GESLFRYWVLPFEALSVLLLAALVGAIVLS-RKKVEEKR 186


>gi|164420816|ref|YP_001648636.1| NADH dehydrogenase subunit 6 [Hydra oligactis]
 gi|158668156|gb|ABW76614.1| NADH dehydrogenase subunit 6 [Hydra oligactis]
          Length = 185

 Score = 81.6 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 1/178 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF+  S + I  S + +   NPI+SVF L+  F  +  L + L  EF++ + +++Y+GA+
Sbjct: 4   FFFFSSILIIFGSLMCINSLNPIHSVFWLVAIFFFSXTLLINLNLEFLSFLLIIIYIGAI 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-LSRLV 125
           ++ FLF+IMMLDI                  I  L    IV  S F+ +    + LS  +
Sbjct: 64  VILFLFVIMMLDIIQIKKNSNINNIIPIILIILSLFIIKIVNISEFIPYYINSDYLSFNL 123

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
              +N  N+    Y++Y     +   +L + MIG I L L +  + K+Q+I  Q   N
Sbjct: 124 INHHNXHNLTLYFYSKYFINFLLISIVLSIGMIGVIKLTLVNNTNSKKQEIFVQHLRN 181


>gi|110578641|ref|YP_667830.1| NADH dehydrogenase subunit 6 [Verticillium dahliae]
 gi|84682168|gb|ABC60427.1| NADH dehydrogenase subunit 6 [Verticillium dahliae]
          Length = 222

 Score = 81.6 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 38/200 (19%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S   I+   L++  +NPI SV  LI  F   A   +LLG  F+    L+VY+GAV + 
Sbjct: 22  IVSLFIILCGVLIIISKNPIVSVLFLIGLFGGVASYLILLGLNFIGFSYLIVYIGAVSIL 81

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112
           FLFI+M+++I I   +   K     + FI I     +     +                 
Sbjct: 82  FLFILMLINIRISELQSNTKNSIPLALFITIFFNYSLFQVLPYDLAILNNNNNYINNILY 141

Query: 113 ---------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGF 151
                                + F+        + + +++ +IG +LYT     L +   
Sbjct: 142 YISLNKQETINDSKLLNTDNDLYFATSNSWDGNLIETSHISSIGNILYTTNNMWLILVSL 201

Query: 152 ILLLSMIGAIVLMLRHRRDI 171
           ILLL+M+GAI++ ++  R+ 
Sbjct: 202 ILLLAMVGAIIITIKSNRNS 221


>gi|311896695|dbj|BAJ29103.1| putative NADH-quinone oxidoreductase subunit J [Kitasatospora setae
           KM-6054]
          Length = 236

 Score = 81.6 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82
           VT R  +++   L+ A    A  FLLL AEFVA + ++VY+G+VIV  LF +M+    I 
Sbjct: 43  VTTRQLVHAALWLVVALGGLAVEFLLLTAEFVAWVQVLVYLGSVIVLVLFGLMLTRAPIG 102

Query: 83  VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142
            +          +  +G  +A  +V     +V +       L          G+ L++ +
Sbjct: 103 RSPDADSGNRPAALAVGAASAATLV---TLVVDAFRSSWIDLSGAAGTTRLTGEYLFSHW 159

Query: 143 AYPLE 147
             P E
Sbjct: 160 VLPFE 164


>gi|58045466|gb|AAW65060.1| NADH dehydrogenase subunit 6 [Ecklonia radiata]
          Length = 311

 Score = 81.6 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F   + +  +    V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAEL 105
           + V  LF++MMLD   I+   +  +K+  + G+    I    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSSKKKRLLYCGALIFLIFLGAV 107



 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKV 193
           +  +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N++  +K 
Sbjct: 239 LSYLLYSTHAILLLIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKE 295

Query: 194 KS 195
           KS
Sbjct: 296 KS 297


>gi|58045490|gb|AAW65072.1| NADH dehydrogenase subunit 6 [Lessonia flavicans]
 gi|292385473|gb|ADE22028.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
 gi|292385481|gb|ADE22034.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
          Length = 311

 Score = 81.6 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F L + +       V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5  IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66 VIVFFLFIIMMLDID 80
          + V  LF++MMLD+ 
Sbjct: 65 IAVLVLFVVMMLDVK 79


>gi|281428806|ref|YP_003354985.1| NADH dehydrogenase subunit 6 [Pneumocystis carinii]
 gi|270486323|gb|ACZ82946.1| NADH dehydrogenase subunit 6 [Pneumocystis carinii]
          Length = 174

 Score = 81.6 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S ++I+ + LVVT +NP+ S+  LI  F++     + L   ++ +  + VYVGA+ + F+
Sbjct: 9   SCLSILLAILVVTSKNPVLSLLYLIGLFIDIGVYLISLQLTYLGLSYITVYVGAIAMLFI 68

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-----------FSAEGE 120
           F+IMML+I  +V E +KK  +L S  +G+     +V      +             +   
Sbjct: 69  FVIMMLNI--QVVESKKKTNYLRSIPLGLFLGSSLVFTLYLSLPREIIMEKYSHLFSYFS 126

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               +   + VE +GKVLYT Y+  L +   IL+L+++GAI +    
Sbjct: 127 WENRILNPSVVEILGKVLYTDYSLWLLLISLILVLAIVGAISIAAHK 173


>gi|302423955|ref|XP_003009807.1| NADH dehydrogenase subunit 6 [Verticillium albo-atrum VaMs.102]
 gi|261361697|gb|EEY24125.1| NADH dehydrogenase subunit 6 [Verticillium albo-atrum VaMs.102]
          Length = 222

 Score = 81.6 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 38/200 (19%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S   I+   L++  +NPI SV  LI  F   A   +LLG  F+    L+VY+GAV + 
Sbjct: 22  IVSLFIILCGVLIIISKNPIVSVLFLIGLFGGVASYLILLGLNFIGFSYLIVYIGAVSIL 81

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112
           FLFI+M+++I I   +   K     + FI I     +     +                 
Sbjct: 82  FLFILMLINIRISELQSNTKNSIPLALFITIFFNYSLFQVLPYDLAILNNNNNYINNILY 141

Query: 113 ---------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGF 151
                                + F+        + + +++ +IG +LYT     L +   
Sbjct: 142 YISLNKQETINDSKLLNTNNDLYFATSNSWDGNLIETSHISSIGNILYTTNNMWLILVSL 201

Query: 152 ILLLSMIGAIVLMLRHRRDI 171
           ILLL+M+GAI++ ++  R+ 
Sbjct: 202 ILLLAMVGAIIITIKSNRNS 221


>gi|192293096|ref|YP_001993701.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodopseudomonas palustris TIE-1]
 gi|192286845|gb|ACF03226.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodopseudomonas palustris TIE-1]
          Length = 168

 Score = 81.2 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 4/166 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SL        A+IS+ + VT  N ++++  L+   +  A  F  LGA F A++ +++Y
Sbjct: 1   MSSLLAIYAGAFALISAAVSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLIMIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F++M L I  E    R++     ++ + +L + LIV    F  F  +    
Sbjct: 61  AGAIVVLFVFVVMTLPISPESI-TRERALLRRAWPLPVLMSVLIVAPFVFGEFGLKAIGQ 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                    + +GK+L+  +A  +E++  +L+  +IG   +    R
Sbjct: 120 PAPVSA---QEVGKLLFGPWALAVELASLLLMAGLIGVRHIGRNDR 162


>gi|261416725|ref|YP_003250408.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373181|gb|ACX75926.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 190

 Score = 81.2 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 5/178 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY+ +F+ ++++   V V+N + S   LIF+FV  A L++L+ AEF+A+  ++
Sbjct: 11  MGGMDIAFYVVAFVILMTAVCCVAVKNILQSAVFLIFSFVTTAILYMLMHAEFIALAQVM 70

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVG V++F +F I++     E A   K      +F + I    ++V         A G 
Sbjct: 71  VYVGGVVIFVVFTILLTSHLGEDAFTTKMPRIFTAFALSIAFVFVMVKCVLPTPDLASGI 130

Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++      ++++N    L       +  P EI   +LL+++I AI +  R + DI+ +
Sbjct: 131 VNSPA-DYSSLQNFALRLLGNDPNGFIIPFEIVSVLLLMTLICAITVARRSKEDIEEE 187


>gi|321271265|gb|ADW79436.1| NADH dehydrogenase subunit 6 [Glomerella lindemuthiana]
          Length = 231

 Score = 81.2 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 4/130 (3%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S  AI+ + L +  +NPI SV  LI  F + +   +LLG  F+ +  L+VY+GAV + 
Sbjct: 22  IVSVFAILCAILTIVSKNPIVSVLFLIGLFGSVSSYLILLGLNFIGLSYLIVYIGAVSIL 81

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
           FLFI+M+++I +   +   K     + FI IL   L+     + +      L+     G+
Sbjct: 82  FLFILMLINIRVSELQSNTKNSIPLALFITILFNYLVFQFLPYDL----AILNNSNKGGS 137

Query: 130 NVENIGKVLY 139
            V  +  VLY
Sbjct: 138 QVAALNNVLY 147


>gi|292385422|gb|ADE21990.1| NADH dehydrogenase subunit 6 [Ecklonia cava]
          Length = 311

 Score = 81.2 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F   + +  +    V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           + V  LF++MMLD   I+   +   K+  + G+         ++ 
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSSKEKRLLYCGALIFLFFLGAVMY 109



 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
           +LY+ +A  L I+G ILL++M+GAI L L+       + + +QL     N++  +K K 
Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEKP 297


>gi|269128577|ref|YP_003301947.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Thermomonospora curvata DSM 43183]
 gi|268313535|gb|ACY99909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Thermomonospora curvata DSM 43183]
          Length = 184

 Score = 81.2 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 48/81 (59%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M    + F L   +A+ S+ LVVT R  +++   L+ AF   AG +L+L AEFVA   ++
Sbjct: 1  MTAAEVVFALLGVVAVGSAVLVVTTRQLVHAALWLVVAFGALAGCYLVLTAEFVAWTQVL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDI 81
          +YVGAV+V  LF IM+    I
Sbjct: 61 IYVGAVVVLLLFGIMLTRAPI 81


>gi|11467053|ref|NP_042529.1| NADH dehydrogenase, subunit 6 [Acanthamoeba castellanii]
 gi|6647619|sp|Q37371|NU6M_ACACA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|562034|gb|AAD11822.1| NADH dehydrogenase, subunit 6 [Acanthamoeba castellanii]
          Length = 260

 Score = 81.2 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 59/107 (55%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + +    +F F+A+  SF+++  +NPI+S+  LI  F N   + ++LG EF+A+I L+VY
Sbjct: 2   LTNYLLIIFCFLALFCSFMIIASKNPIHSILYLILVFCNVTFVLIILGVEFIAIIFLIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           VGA+ V FLF++MML+I I   +    R       I       +   
Sbjct: 62  VGAIAVLFLFVVMMLNIKILELDEVFWRYIPAGLLISSCFLFQLFTF 108



 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176
           A   L  L F+  N E +G ++YT   +   +   ILL+SMIG+I+L+L    +IKRQ I
Sbjct: 185 ASTNLLGLSFELTNTEILGWLVYTYTFFIFLVVSLILLISMIGSIILVLNQNINIKRQVI 244

Query: 177 SKQLESNPDNSIVMVK 192
            +Q   +  +S+ +  
Sbjct: 245 FRQSLRDLKSSVSLKN 260


>gi|39937316|ref|NP_949592.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Rhodopseudomonas palustris CGA009]
 gi|39651174|emb|CAE29697.1| NADH-ubiquinone dehydrogenase chain J [Rhodopseudomonas palustris
           CGA009]
          Length = 168

 Score = 80.8 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 4/166 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SL        A+IS+ + VT  N ++++  L+   +  A  F  LGA F A++ +++Y
Sbjct: 1   MSSLLAIYAGAFALISAAVSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLIMIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F++M L I  E    R++     ++ + +L + LIV    F     +    
Sbjct: 61  AGAIVVLFVFVVMTLPISPESI-TRERALLRRAWPLPVLMSVLIVAPFVFGEIGLKATGQ 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
                    + +GK+L+  +A  +E++  +L+  +IG   +    R
Sbjct: 120 PAPVSA---QEVGKLLFGPWALAVELASLLLMAGLIGVRHIGRNDR 162


>gi|91176238|ref|YP_537111.1| NADH dehydrogenase subunit 6 [Paracoccidioides brasiliensis]
 gi|63081167|gb|AAY30330.1| NADH dehydrogenase subunit 6 [Paracoccidioides brasiliensis]
          Length = 185

 Score = 80.8 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 7/167 (4%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   + I      +  +NP+ S+F LI  F + +    L+G EF+ +  L+VY+GAV + 
Sbjct: 19  ILYIICIFFGLYTILNKNPVISIFFLIGLFSSISCYLFLIGLEFIGLSYLLVYIGAVSIL 78

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-------MVFSAEGELS 122
           FLFI+M++++ I     +       + F  IL   ++             +++       
Sbjct: 79  FLFILMLINLRISELTTKTTNSLPLAIFSFILFIFILNFNLPINTRDNPEIIYVISLNWD 138

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            ++     + +IG +LYT Y+  L I   ILLL+M+G+IV+ L   +
Sbjct: 139 NILINNTQINSIGNILYTNYSLWLIILSVILLLAMVGSIVITLNKNK 185


>gi|302327785|gb|ADL26986.1| NADH-quinone oxidoreductase, J subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 180

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 5/178 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + FY+ +F+ ++++   V V+N + S   LIF+FV  A L++L+ AEF+A+  ++
Sbjct: 1   MGGMDIAFYVVAFVILMTAVCCVAVKNILQSAVFLIFSFVTTAILYMLMHAEFIALAQVM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVG V++F +F I++     E A   K      +F + I    ++V         A G 
Sbjct: 61  VYVGGVVIFVVFTILLTSHLGEDAFTTKMPRIFTAFALSIAFVFVMVKCVLPTPDLASGI 120

Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
           ++      ++++N    L       +  P EI   +LL+++I AI +  R + DI+ +
Sbjct: 121 VNSPA-DYSSLQNFALRLLGNDPNGFIIPFEIVSVLLLMTLICAITVARRSKEDIEEE 177


>gi|291296247|ref|YP_003507645.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus
           ruber DSM 1279]
 gi|290471206|gb|ADD28625.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus
           ruber DSM 1279]
          Length = 199

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 4/138 (2%)

Query: 3   MQSLFFYLFSFMAIIS-SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           M   F+ + + + ++     VV ++N +++  +LI  F+  AG+++ L A FVAMI ++V
Sbjct: 1   MSIGFWEVLALLVLVGTGLAVVRLQNAVHAALALIANFLVVAGVYVALEARFVAMIQIIV 60

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           Y GA++V FLF+IM+L      +    +       ++  L A  +     + V   +   
Sbjct: 61  YAGAIVVLFLFVIMLLS---AASANVGQDLLPRLGWVAALGALGLAGVLTYAVTRFQPPA 117

Query: 122 SRLVFKGNNVENIGKVLY 139
                 G   + +G +LY
Sbjct: 118 GTPALGGGLPQALGPLLY 135


>gi|118579076|ref|YP_900326.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pelobacter
           propionicus DSM 2379]
 gi|118580055|ref|YP_901305.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pelobacter
           propionicus DSM 2379]
 gi|118581585|ref|YP_902835.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pelobacter
           propionicus DSM 2379]
 gi|118501786|gb|ABK98268.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379]
 gi|118502765|gb|ABK99247.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379]
 gi|118504295|gb|ABL00778.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379]
          Length = 164

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 2/158 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  +F   FS +A+I + LV+T+R P+    +L+   +  AG++  LGA  +AM  +++Y
Sbjct: 1   MIDVFIAFFSLLAVIFAALVLTLRQPMRCALALVSHMICLAGIYAALGAHVIAMFQVLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGAV+VF ++ IM+LD   +       R  + +  +G+  A ++  A  ++        +
Sbjct: 61  VGAVMVFMVYTIMLLDDRDDSYRHPYARKIVPAVVVGLGFAAVVWAAIGYLPAQPA--AA 118

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
                              Y +  E++  +LL+ ++ A
Sbjct: 119 APAVDPFTFAAFSLSFMKYYWFHFELATVLLLIGVVAA 156


>gi|300115151|ref|YP_003761726.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Nitrosococcus watsonii C-113]
 gi|299541088|gb|ADJ29405.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus
           watsonii C-113]
          Length = 261

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 95/237 (40%), Gaps = 53/237 (22%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V+Q + F +F+F++I  +  + T  +   S   L+ +F+  AGLF+LL A+ +A++ +++
Sbjct: 6   VLQWITFGIFAFISIAGALGMATTMSMFRSGIFLMASFIGVAGLFILLLADLLALLQIMM 65

Query: 62  YVGAVIVFFLF----------IIMMLDIDIEVAEPRKKRGFLGSF--------------- 96
           Y+G ++V  LF           +M   + +   E     G   S                
Sbjct: 66  YIGGMLVMILFMLLFSGDPGGAMMSTHMRLRGPEWFFSLGLARSPQSKADGNKDDSSPDK 125

Query: 97  --------------------------FIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
                                        +L+  +       +++     + R +   ++
Sbjct: 126 GNHEEEGEKEGNHGNDDMSMFTPVKRAAALLSVGIGALLIALLLWRPHWAVVRQMPDQDS 185

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRRDIKRQDISKQLESNPD 185
              IG +L  +Y    E +G ++LL + GA++L    +H    +R+D+   +++ P 
Sbjct: 186 PRRIGHLLMDKYMLAFEGAGLLILLGIFGAVMLQRPGKHPDPTQREDLQAAVDAPPA 242


>gi|121534368|ref|ZP_01666192.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Thermosinus
           carboxydivorans Nor1]
 gi|121307138|gb|EAX48056.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Thermosinus
           carboxydivorans Nor1]
          Length = 168

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +  FY+ + + + ++  VV  RN ++S   L   F+  AGL++LL A+F+A + ++VY G
Sbjct: 7   TASFYVLAALTLAAAAGVVFKRNLVHSALLLALTFIGVAGLYVLLQADFLAAVQVLVYNG 66

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV V  +  +M+       +          +  +  +   +I+ A     +         
Sbjct: 67  AVAVIVVIGVMVTQRGDMKSSNPSNSLGWKAAAVAAVFTGMIIAAVAATPWPLAAAPPAA 126

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
                  E    +L   +A   E +  +LL++M+GAI+L  
Sbjct: 127 ATAPAIAE----ILLRDFAVAFETAAVLLLVAMMGAIILAK 163


>gi|124302959|ref|YP_001023754.1| NADH dehydrogenase subunit 6 [Angiopteris evecta]
 gi|221272308|sp|A2T386|NU6C_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|110628357|gb|ABG79653.1| NADH-plastoquinone oxidoreductase subunit 6 [Angiopteris evecta]
          Length = 197

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
            N +YS   L   F+  + L+L+L A+FVA   +++YVGAV V  +F +M++D    +  
Sbjct: 30  TNIVYSALLLGLVFICISLLYLVLNADFVAAAQVLIYVGAVNVLTVFAVMLIDKPKNITL 89

Query: 86  PRKK----RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139
                      LG      +   +++  +++       + ++ V +G   +V+ IG  L 
Sbjct: 90  FSFSNVGDNITLGVCTSLFILLTIMIPDASWSEIYMTKQSTKFVEQGLTTDVQLIGSQLL 149

Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           T++  P E+   +LL+++IGAI +  + R
Sbjct: 150 TKFLLPFELLSILLLVALIGAITIARQER 178


>gi|289474479|gb|ADC97857.1| NADH dehydrogenase subunit 6 [Paragorgia kaupeka]
          Length = 154

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V          
Sbjct: 1   WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNQVDYQDHSHFLP 60

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143
                  +   +I    + +  S +   + ++    N+  IG  LYT Y 
Sbjct: 61  -------VGLSVIFLFYSLLTNSPKYIGNPVIGSRTNIGAIGSHLYTTYY 103


>gi|302824511|ref|XP_002993898.1| hypothetical protein SELMODRAFT_137798 [Selaginella moellendorffii]
 gi|296399275|gb|ADH10450.1| NADH-plastoquinone oxidoreductase subunit 6 [Selaginella
           moellendorffii]
 gi|300138265|gb|EFJ05039.1| hypothetical protein SELMODRAFT_137798 [Selaginella moellendorffii]
          Length = 190

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           + S  VV++ N ++   S        +     + A+F A + ++++ GAV V   F  M 
Sbjct: 21  LGSLGVVSLVNIVHPAPSSGSVSACISLPHPSMNADFAAAVQILIHAGAVNVPIPFAAMP 80

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF------KGNN 130
           +           K   +G      L         N +++++   +  +V         ++
Sbjct: 81  VSQPQYPHP--AKPWTVGDGITSALRTSAFPPLINMILYTSWYRIFPIVLRNAGSSPTHS 138

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           V+ IG    T+   P E    +LL++++GAI +  R 
Sbjct: 139 VQRIGSYSSTESLPPFEPPSIVLLVALVGAITVARRE 175


>gi|283850898|ref|ZP_06368184.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           sp. FW1012B]
 gi|283573821|gb|EFC21795.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio
           sp. FW1012B]
          Length = 172

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M      FYL + + + ++ L  T RNP+++V   +  F+ AAG+F++LGA    ++ +V
Sbjct: 1   MTALGALFYLLAAVLLGAAVLTATRRNPMHAVCCAVITFLAAAGMFVVLGAPLPGVLEVV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA++V FLFIIM+L +       R  R  +           L          +    
Sbjct: 61  VYAGAIMVLFLFIIMLLGLSAGTGPVRAGRLVVPGVLAAASLVALFALIG-----ADPAG 115

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISG 150
            + L     +   +G VL+  Y   +E+  
Sbjct: 116 RTMLPAAIASPAAVGTVLFDAYWLAVEVVS 145


>gi|113170504|ref|YP_717295.1| nad6 [Ostreococcus tauri]
 gi|112806911|emb|CAL36417.1| unnamed protein product [Ostreococcus tauri]
          Length = 256

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 52/91 (57%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           +V+  +NP+YSV  LI  F N AGL LLL  +F A+I L+VYVGA+ V FLF++MMLDI 
Sbjct: 20  MVIRSKNPVYSVLFLILVFCNTAGLLLLLNLDFFALIFLIVYVGAIAVLFLFVVMMLDIK 79

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +   +           FIG++         N
Sbjct: 80  LAEMQESIFFYLPIGGFIGLIFFIEFYFLFN 110


>gi|300087938|ref|YP_003758460.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527671|gb|ADJ26139.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 162

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            L F++F+   I ++  VV  RN   +   LI  F   AGLF+ L A+F+A I +++YVG
Sbjct: 2   ELAFFIFASGIIGTALAVVLFRNIFRASLMLILCFFLVAGLFVTLYADFLAAIQVLIYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           ++ +  + + +ML  +I+      +      F    +   LI+ +        +  +S L
Sbjct: 62  SISILII-LAIMLTREIQTGNLSNRLRAPALFTGAGVTLVLILTSVG-----TDWNVSTL 115

Query: 125 VFKGNNVENIGKVLYTQ--YAYPLEISGFILLLSMIGAIVLMLRHRR 169
               N    + ++L++   +   + ++  +LL ++IGAI+L+    +
Sbjct: 116 KPAENTTALLAELLFSTDSFMMAVAMAAILLLTAIIGAIILVRSDDK 162


>gi|167044393|gb|ABZ09070.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [uncultured marine crenarchaeote HF4000_APKG6D3]
          Length = 177

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + M    F   + + I+S+   + +R+ IY   +L+      AG F+LL + FVA+  + 
Sbjct: 5   LNMVDALFLGIAVLTIVSAIAALEMRSLIYGGLALMGTLGGIAGFFILLDSPFVALFQIA 64

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VYVG++ V  LF+IM++  ++   +    KR + G   + IL   L     N  + S   
Sbjct: 65  VYVGSIAVLILFVIMLVKSELIFQKKEDPKRRYAGIALMLILMICLGAVIFNSGLSSITT 124

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           E   + +     + IG+     Y   L     +L  S+ GA++L  R 
Sbjct: 125 EEPPVDY-----KEIGEDFLIYYWPALIAMALVLSGSITGALILARRQ 167


>gi|200004082|ref|YP_002221532.1| NADH dehydrogenase subunit 6 [Hydra magnipapillata]
 gi|194578744|tpe|CAP49321.1| TPA: NADH dehydrogenase subunit 6 [Hydra vulgaris]
          Length = 185

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 1/173 (0%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S + I+   + +   NPI+SVF L+  F  +  L + L  EF++++ +++YVGA+++ FL
Sbjct: 9   SILIILGCLMCINSLNPIHSVFWLVTVFFFSFALLINLNLEFLSLLLIIIYVGAIVILFL 68

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-LSRLVFKGNN 130
           F+IMMLDI                  I  L    I+    F+ +    + L+  +    N
Sbjct: 69  FVIMMLDIIQIKKNSNINNIIPIILIILSLLTIKIINKDIFLSYHLNNDFLNFNLINHYN 128

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
             N+    Y++Y+    +   IL + MIG IVL + +  + K+Q I  Q   N
Sbjct: 129 FHNLALFFYSKYSINFILISIILSIGMIGVIVLTITYNSNSKKQKIFIQHLRN 181


>gi|284034102|ref|YP_003384033.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Kribbella
           flavida DSM 17836]
 gi|283813395|gb|ADB35234.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kribbella
           flavida DSM 17836]
          Length = 176

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +  F +   +A++++ LVVT R  +++   L+ A    AG F  L AEFVA++ ++VY
Sbjct: 1   MTTALFSVAGAVALVAAVLVVTSRRIVHAALWLVVALGAVAGCFGALHAEFVALVQILVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA++V  LF +M+             R          + A  +       V  A G   
Sbjct: 61  VGAIVVLVLFALMLTKAPTNPLPALTTRRSP----FAAVVAGALAVLLGAGVVIAFGNEK 116

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
                  + E +G  ++  +  P E+   +LL ++IGAIVL  R 
Sbjct: 117 IGPVPAGSAEAVGTSVFRIWVLPFEVLSVLLLAALIGAIVLSHRK 161


>gi|168703223|ref|ZP_02735500.1| hypothetical protein GobsU_27071 [Gemmata obscuriglobus UQM 2246]
          Length = 191

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 50/120 (41%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  + F +       S+  VV  R+ +     L+F  V  + ++ LLGAEF     L+
Sbjct: 1   MSLPVILFAVVGAATCASALGVVAARDVVRMAVWLLFTLVGVSLIYFLLGAEFAGAAQLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVG  +V  +F +M+           ++  +     +G+    L+   S  +     GE
Sbjct: 61  VYVGGTLVLVVFGVMLTAHGPLRELRTRRTEWFVGGALGVALFTLLAVVSLKLGSPTAGE 120


>gi|282860267|ref|ZP_06269337.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           bivia JCVIHMP010]
 gi|282586941|gb|EFB92176.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           bivia JCVIHMP010]
          Length = 177

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 71/172 (41%), Gaps = 5/172 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + S + + ++ L V     + +  +L+F     AGL+ LL   F+  + + +Y 
Sbjct: 3   QIIMFAVLSVVILGAALLSVMTNRIMRAATALLFVLFGVAGLYFLLDYTFLGAVQISIYA 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELS 122
           G + + ++F I +++         +  G        +    L+V  + F+        ++
Sbjct: 63  GGITMVYVFAIHLVNKQTLQGLSERWLGKRTILAAALALIGLVVVVAIFLKNQLLNAVVA 122

Query: 123 RLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
                   +E IG  L +     Y  P E     LL  +IG +V++ + ++ 
Sbjct: 123 STTSAELPMEKIGTTLMSGDKYGYVLPFEFISLFLLACIIGGLVILNKTKKG 174


>gi|333025063|ref|ZP_08453127.1| putative NADH dehydrogenase subunit I J [Streptomyces sp. Tu6071]
 gi|332744915|gb|EGJ75356.1| putative NADH dehydrogenase subunit I J [Streptomyces sp. Tu6071]
          Length = 211

 Score = 78.9 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           +++   L+      A  +LLL AEF+A + +++YVG+V+V  LF +M+    I  ++   
Sbjct: 1   MHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVVVLLLFGLMLTRAPIGRSDDAD 60

Query: 89  KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLE 147
            R    +  + +LAA  +V        +    L     +G      G  L+  +  P E
Sbjct: 61  SRNRPLAAAVALLAAAGLVWVVTDAFRTTYIHLDGAHPQGTTAVT-GAFLFRHWVLPFE 118


>gi|292385485|gb|ADE22037.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
 gi|292385489|gb|ADE22040.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
 gi|292385493|gb|ADE22043.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
 gi|292385497|gb|ADE22046.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
 gi|292385501|gb|ADE22049.1| NADH dehydrogenase subunit 6 [Lessonia vadosa]
          Length = 311

 Score = 78.9 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 43/75 (57%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F L + +       V + +NP+Y    L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5  IIFILIATLGGTLGVKVTSTQNPVYRGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66 VIVFFLFIIMMLDID 80
          + V  LF++MMLD+ 
Sbjct: 65 IAVLVLFVVMMLDVK 79


>gi|255961346|ref|YP_003097528.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii]
 gi|254941518|gb|ACT89033.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii]
          Length = 180

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           + S  VV++ N ++   S        +     + A+F A + ++++ GAV V   F  M 
Sbjct: 21  LGSLGVVSLVNIVHPAPSSGSVSACISLPHPSMNADFAAAVQILIHAGAVNVPIPFAAMP 80

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF------KGNN 130
           +           K   +G      L         N +++++   +  +V         ++
Sbjct: 81  VSQPQYPHP--AKPWTVGDGITSALRTSAFPPLINMILYTSWYRIFPIVLRNAGSSPTHS 138

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           V+ IG    T+   P E    +LL++++GAI +  R 
Sbjct: 139 VQRIGSYSSTESLPPFEPPSIVLLVALVGAITVARRE 175


>gi|24080118|ref|NP_705909.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. grubii]
 gi|22536162|gb|AAN01231.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var.
           neoformans]
 gi|23630297|gb|AAN37587.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. grubii]
          Length = 202

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 96/202 (47%), Gaps = 35/202 (17%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +    L +F A++S  LV+T  NP+ SV  LI  FVNAAG  +LLG  FV +  L+VY
Sbjct: 1   MNTFLLDLLAFGAVLSGVLVITSVNPVISVLFLISVFVNAAGYLVLLGVGFVGISYLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGILAAELI------------ 106
           VGA+ + FLF++MML+I I     V     K   LG     +   E++            
Sbjct: 61  VGAIAILFLFVVMMLNISITEIVSVGREYTKNLPLGFVVGTVFFFEILSVIPAATTNAGE 120

Query: 107 ------------VCASNFMVFSAEGELSRLVFKGNN-------VENIGKVLYTQYAYPLE 147
                       +   N  + +++  ++      +N       +E IG  LYT  +  L 
Sbjct: 121 LPLGLFTYLNGLLLGVNTSITNSDVNMAFANTGADNAFSSHLQIEAIGHGLYTYGSVWLL 180

Query: 148 ISGFILLLSMIGAIVLMLRHRR 169
           ++ FILLL+M+G I L LR R 
Sbjct: 181 LASFILLLAMVGPIALCLRPRT 202


>gi|307566016|ref|ZP_07628474.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           amnii CRIS 21A-A]
 gi|307345204|gb|EFN90583.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           amnii CRIS 21A-A]
          Length = 176

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 72/172 (41%), Gaps = 5/172 (2%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           Q + F + + + + ++F  V     + +  +L+F     AG++ LL   F+  + + +Y 
Sbjct: 3   QIIMFAVLAVVILAAAFFSVLTSRIMRAATALLFVLFGVAGMYFLLDYTFLGTVQISIYA 62

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           G + + ++F I +++         +  G       G+     +V A+ F+       +  
Sbjct: 63  GGITMVYVFAIHLVNKQTLRGLSERWLGKRTFLAAGLAVVGFVVVAAVFLKNELLNAVVS 122

Query: 124 LVFKGN-NVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170
              KG   ++ IG  L +     Y  P E     LL  +IG +V++ +  + 
Sbjct: 123 SSVKGEVPMQKIGTTLMSADKYGYVLPFEFISLFLLACIIGGLVILNKKNKK 174


>gi|225874135|ref|YP_002755594.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196]
 gi|225793660|gb|ACO33750.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196]
          Length = 172

 Score = 78.5 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F++ +F+ + S+   +T+   I+   +L+ AF   A L+L LGAEF  +  L+VYVG
Sbjct: 2   AVSFWILAFLTLASAVAAMTMARLIHCALALVLAFAGVATLYLNLGAEFAGLAQLLVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV +  +F I++       A P  +  F GS     + A L     +  +  A    ++ 
Sbjct: 62  AVAILIVFAILLTRSSEVTAMPAARTAFSGSLIALAVFAVLARAIISSRLVHA--APAQP 119

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
           +     V  IG+ L   Y  PLE+   +L  ++IGA+++ LR + 
Sbjct: 120 IAPMATVRQIGEALMQPYVLPLEVLALLLTAALIGAVLIALREKP 164


>gi|209427647|ref|YP_002274321.1| NADH dehydrogenase subunit 6 [Blastocladiella emersonii]
 gi|82492275|gb|ABB78014.1| NADH dehydrogenase subunit 6 [Blastocladiella emersonii]
          Length = 201

 Score = 78.5 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTV-RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           M +    FYL S + I+S  L + + +NPI SV  L+  FVN A +F+LLG   +  I +
Sbjct: 1   MTLTWGVFYLLSVLTILSGVLTIVMGKNPINSVVYLVSCFVNCALIFILLGVNLLGFIYI 60

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +VYVGA+ + F+F+IMM+D+    +E        G   +    A +I  ++  ++     
Sbjct: 61  IVYVGAIAILFIFVIMMMDLRNLTSEKEMSSNSKGFLSLSYPLALIIAISTLLLMMKENN 120

Query: 120 ELSRLVFKGNNVENIGKVLYTQY 142
               L    +   +IGK++   +
Sbjct: 121 LSVILQITTDLGSSIGKIVVNDF 143


>gi|28972928|gb|AAM95264.1| NADH dehydrogenase subunit 6 [Muriceopsis bayeri]
 gi|28972950|gb|AAM95275.1| NADH dehydrogenase subunit 6 [Muriceopsis flavida]
          Length = 120

 Score = 78.5 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSIIFLFYSLLTNSPKYISNPVIGSR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDISK 178
            N+  IG  LYT Y   + I+  +LL++MIGAI+L  +                RQD+  
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYNSPGESLRSRQDLFL 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|28972902|gb|AAM95251.1| NADH dehydrogenase subunit 6 [Pterogorgia anceps]
 gi|28972904|gb|AAM95252.1| NADH dehydrogenase subunit 6 [Eunicea knighti]
 gi|28972906|gb|AAM95253.1| NADH dehydrogenase subunit 6 [Eunicea sp. Bahamas-JS-2002]
 gi|28972908|gb|AAM95254.1| NADH dehydrogenase subunit 6 [Eunicea tourneforti]
 gi|28972910|gb|AAM95255.1| NADH dehydrogenase subunit 6 [Eunicea fusca]
 gi|28972916|gb|AAM95258.1| NADH dehydrogenase subunit 6 [Plexaura homomalla]
 gi|28972918|gb|AAM95259.1| NADH dehydrogenase subunit 6 [Plexaura flexuosa]
          Length = 120

 Score = 78.5 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178
            N+  IG  LYT Y   + I+  +LL++MIGAI+L                   RQD+  
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYNSHGESLRSRQDLFL 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|116747654|ref|YP_844341.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Syntrophobacter fumaroxidans MPOB]
 gi|116696718|gb|ABK15906.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Syntrophobacter fumaroxidans MPOB]
          Length = 175

 Score = 78.5 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F++   + +  +   V  RN +++V  LI A     GL+L LG+ F+ ++ L++YVGA+ 
Sbjct: 15  FWIVVGLTLAGASFAVFPRNILHNVLGLILALSGIGGLYLSLGSFFMGLMQLLIYVGAIC 74

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V  +F IM+          R+      +    ++    +V     +V       +     
Sbjct: 75  VAIVFAIMLSRPLHLEVPKREAPKVAMAVATSVVFLVAMVG----VVLRTNWVPAVERGT 130

Query: 128 GNNVENIGKVLYTQYAYPLEI 148
             +VE IG +L T+YA   E+
Sbjct: 131 DWSVEAIGDLLLTRYALVFEV 151


>gi|28972900|gb|AAM95250.1| NADH dehydrogenase subunit 6 [Pterogorgia citrina]
          Length = 120

 Score = 78.1 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDISK 178
            N+  IG  LYT Y   + I+  +LL++MIGAI+L  +                RQD+  
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYNSPGESLRSRQDLFL 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|146277736|ref|YP_001167895.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555977|gb|ABP70590.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 164

 Score = 78.1 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L     + +A+  + L VT    ++++  L+ A ++ AG F  LGA F   + +++Y
Sbjct: 1   MSDLSAIWCASVALACAILAVTRPAIVHALIWLVAALLSLAGCFFALGAGFAGAVQILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++  F+F++M  D   E     + R   G          + +  +  ++       +
Sbjct: 61  AGAIVAVFVFVVMTADASPEALARERARLAQGWRRPAAAVGLVALPLALGLLAGGTSPAA 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                 +    +G +L+  +A  +E++  +LL +++GA  L  R   
Sbjct: 121 APDSGPS----LGAILFGPWAVAVEVASGLLLAALMGARHLGRRREE 163


>gi|57168325|ref|ZP_00367459.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
           [Campylobacter coli RM2228]
 gi|57020133|gb|EAL56807.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
           [Campylobacter coli RM2228]
          Length = 171

 Score = 78.1 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++ L F  FS + +    + V  +N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IEILAFTFFSVVVLGFFLVAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GAV+  + F +M  D   E  E    KK  FL      +L   +++   +  +      
Sbjct: 62  SGAVLGLYSFAMMFFDSSKEFKEKLRAKKSFFLLVILSAVLLLFMLLGFKHQNIAGDLAL 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147
               +F  N  + +   ++++Y    E
Sbjct: 122 SDPNLFDYN--KQLAFAIFSKYLLAFE 146


>gi|11467591|ref|NP_043737.1| NADH dehydrogenase, subunit 6 [Allomyces macrogynus]
 gi|1236421|gb|AAC49238.1| NADH dehydrogenase, subunit 6 [Allomyces macrogynus]
          Length = 204

 Score = 78.1 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTV-RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           M +    FYL S + IIS  L + + +NPI SV  L+F FVN A +F+L+G   +  I +
Sbjct: 1   MTITWGLFYLLSGLGIISGVLTIIMGKNPINSVVYLVFCFVNCAAVFILMGISLLGFIYI 60

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +VYVGA+ + F+F+IMM+D+   + E     G    F        LI+  +  ++   + 
Sbjct: 61  IVYVGAIAILFIFVIMMMDLR-NLTESNLMSGHKTFFSFYNYPLALIIAITTLLLVMKDN 119

Query: 120 ELSRLVFKGNNV 131
             +  V    N+
Sbjct: 120 SHAVSVLFDTNI 131


>gi|28972920|gb|AAM95260.1| NADH dehydrogenase subunit 6 [Plexaura kuna]
          Length = 120

 Score = 78.1 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178
            N+  IG  LYT Y   + I+  +LL++MIGAI+L                   RQD+  
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYTSHGESLRSRQDLFL 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|108773226|ref|YP_635801.1| NADH dehydrogenase subunit 6 [Chara vulgaris]
 gi|122177789|sp|Q1ACE6|NU6C_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|77157882|gb|ABA61923.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chara vulgaris]
          Length = 178

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 60/147 (40%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q +  YL      I +  V+   N +Y+  SL       A L+L   A+F+A+  ++
Sbjct: 6   MSYQLIVAYLIQLGIYIGALAVIFFNNIVYAAISLALVLSLIALLYLFFDADFLAVTQIL 65

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +YVGA+ V  LF IM++ +                     ++  +++         +   
Sbjct: 66  IYVGAINVLILFAIMLISLPKSSTFIFYFTKKSQISAFACISLFVLLVKIILQTPWSTQS 125

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147
              L+ + N ++ IG  L + +  P E
Sbjct: 126 SYILLNENNKLDQIGIYLLSNFLLPFE 152


>gi|242092568|ref|XP_002436774.1| hypothetical protein SORBIDRAFT_10g008595 [Sorghum bicolor]
 gi|241914997|gb|EER88141.1| hypothetical protein SORBIDRAFT_10g008595 [Sorghum bicolor]
          Length = 103

 Score = 77.8 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 56/97 (57%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
              + S  A++S  +VV  +NP++SV   I  F + +GL +LL  +F AMI  VV++GA+
Sbjct: 1   ILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLDLDFSAMIFPVVHIGAI 60

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103
           ++ FLF++MM +I I        R  L S  IG++  
Sbjct: 61  VISFLFVVMMFNIQIAEIHEEVLRYLLVSGIIGLIFW 97


>gi|81238365|gb|ABB60024.1| NADH dehydrogenase subunit 6 [Calyptrophora japonica]
          Length = 151

 Score = 77.8 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 13/153 (8%)

Query: 40  VNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
           VNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V              + 
Sbjct: 1   VNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLPVGLSVI 60

Query: 100 ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
            L   L+  +  ++        S ++    N+  IG  LYT Y   + ++  +LL++M+G
Sbjct: 61  FLFYSLLTNSPKYI----SSTHSPVIGSRTNIGAIGSHLYTTYYELVLVASLVLLVAMVG 116

Query: 160 AIVLMLRHRRDI---------KRQDISKQLESN 183
           AI+L  +               RQD+  Q+   
Sbjct: 117 AILLAKQPNPPSLYNSHVEIRSRQDLFLQISRK 149


>gi|108804465|ref|YP_644402.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765708|gb|ABG04590.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rubrobacter
           xylanophilus DSM 9941]
          Length = 177

 Score = 77.8 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F   + M ++S+  VV  R+ ++S   +  AF+  AG F++L    +A   +++YVG
Sbjct: 2   TVAFAFLTGMTLVSALGVVLSRSVVHSALFMSGAFLGVAGFFVMLNVPVLAAFQVLIYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           AV V  LF IM           R +       + G  AA  +     +++ +     +  
Sbjct: 62  AVTVVILFGIMFTQRP---QVRRFRTIINRQIWPGFFAAAGVGAFLCYILATEGWGETGP 118

Query: 125 VFKGNNVENIGKVLYT 140
                +V  +G+ L  
Sbjct: 119 GNGARSVAVLGRSLLG 134


>gi|81238355|gb|ABB60019.1| NADH dehydrogenase subunit 6 [Narella alaskensis]
 gi|81238357|gb|ABB60020.1| NADH dehydrogenase subunit 6 [Narella arbuscula]
 gi|81238359|gb|ABB60021.1| NADH dehydrogenase subunit 6 [Narella cristata]
 gi|81238361|gb|ABB60022.1| NADH dehydrogenase subunit 6 [Narella bayeri]
 gi|81238363|gb|ABB60023.1| NADH dehydrogenase subunit 6 [Narella abyssalis]
 gi|81238367|gb|ABB60025.1| NADH dehydrogenase subunit 6 [Primnoa pacifica var. willeyi]
          Length = 151

 Score = 77.8 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 13/153 (8%)

Query: 40  VNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
           VNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++    +V              + 
Sbjct: 1   VNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLPVGLSVI 60

Query: 100 ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
            L   L+  +  ++        S ++    N+  IG  LYT Y   + ++  +LL++M+G
Sbjct: 61  FLFYSLLTNSPKYI----SSTHSPVIGSRTNIGAIGSHLYTTYYELVLVASLVLLVAMVG 116

Query: 160 AIVLMLRHRRDI---------KRQDISKQLESN 183
           AI+L  +               RQD+  Q+   
Sbjct: 117 AILLAKQPNTPSLYNSHVEIRSRQDLFLQISRK 149


>gi|46446202|ref|YP_007567.1| putative NADH-ubiquinone oxidoreductase chain J [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399843|emb|CAF23292.1| putative NADH-ubiquinone oxidoreductase chain J [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 170

 Score = 77.8 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 76/160 (47%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++F  + +ISSF ++    PI +    + A ++ A L++ L A+F+A + +++Y GA++V
Sbjct: 11  WIFGILLLISSFGILLTSKPIQASLCFLLALLSLAALYVELSAQFIAAMQVLIYAGAILV 70

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F+F+I++             +       + I A  L     ++ +         L    
Sbjct: 71  IFMFVIVLFQDAHNQIHQFVAQSKSSISILAIAAFLLAFGFLSYYLSELSTSTKSLPEGF 130

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
               ++G +LY  + +P E    I L++++GA+ +  + R
Sbjct: 131 GTAHSLGYLLYVNFFFPFEAVILIFLIAVVGALYIGRKER 170


>gi|28972934|gb|AAM95267.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia elisabethae]
 gi|28972936|gb|AAM95268.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia americana]
 gi|28972938|gb|AAM95269.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia bipinnata]
 gi|28972940|gb|AAM95270.1| NADH dehydrogenase subunit 6 [Gorgonia ventalina]
 gi|28972942|gb|AAM95271.1| NADH dehydrogenase subunit 6 [Gorgonia mariae]
 gi|28972944|gb|AAM95272.1| NADH dehydrogenase subunit 6 [Gorgonia flabellum]
 gi|28972952|gb|AAM95276.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia acerosa]
          Length = 120

 Score = 77.8 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178
            N+  IG  LYT Y   + I+  +LL++MIGAI+L                   RQD+  
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDLFL 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|28972898|gb|AAM95249.1| NADH dehydrogenase subunit 6 [Pseudoplexaura crucis]
 gi|28972912|gb|AAM95256.1| NADH dehydrogenase subunit 6 [Muricea muricata]
          Length = 120

 Score = 77.8 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSK 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178
            N+  IG  LYT Y   + I+  +LL++MIGAI+L              +    RQD+  
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYNSHGKLLRSRQDLFL 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|28972930|gb|AAM95265.1| NADH dehydrogenase subunit 6 [Pacifigorgia elegans]
          Length = 120

 Score = 77.8 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178
            N+  IG  LYT Y   + I+  +LL++MIGAI+L                   RQD+  
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDLFL 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QVSRE 118


>gi|167042387|gb|ABZ07114.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [uncultured marine crenarchaeote HF4000_ANIW97P9]
          Length = 171

 Score = 77.4 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 6/166 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F   + + I+S+   + +R+ IY   +L+      AG F+LL + FVA+  + VY
Sbjct: 1   MVDSLFLGIAVLTIVSAIAALEMRSLIYGGIALMGTLGGIAGFFILLDSPFVALFQIAVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VG++ V  LF IM++  ++   +    KR + G   + IL   L     N  + S   E 
Sbjct: 61  VGSIAVLILFTIMLVKNELIFQKKEDPKRRYAGIALMLILMISLGAVIFNSGLSSITTEE 120

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
             + +     + IG+     Y   L     +L  S+ GA++L  R 
Sbjct: 121 PPVDY-----KEIGEDFLIYYWPALIAMALVLAGSITGAMILARRQ 161


>gi|292385426|gb|ADE21993.1| NADH dehydrogenase subunit 6 [Ecklonia radiata]
          Length = 286

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F   + +  +    V + +NP+YS   L+  F   + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAEL 105
           + V  LF+ MMLD   I+   +  +K+  + G+    I    +
Sbjct: 65  IAVLELFVDMMLDVKAIERPWSSKKKRLLYCGALIFLIFLGAV 107



 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           +  +LY+ +A  L I+G ILL++M+GAI L L+  
Sbjct: 239 LSYLLYSTHAILLLIAGVILLIAMVGAISLTLQKN 273


>gi|77463680|ref|YP_353184.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides 2.4.1]
 gi|77388098|gb|ABA79283.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides 2.4.1]
          Length = 164

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L     + +A+ S+ L VT    ++++  L+ A ++ AG F  LGA F   + +++Y
Sbjct: 1   MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++  F+F++M  D   E     + R   G        A + V     ++       +
Sbjct: 61  AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLTRTSAPEA 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                      +G +L+  +A  +E++  +LL +++GA  L  R   
Sbjct: 121 APATGAG----LGAILFGPWALAVEVASGLLLAALMGARHLGRRREE 163


>gi|126462512|ref|YP_001043626.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104176|gb|ABN76854.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 164

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 4/167 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L     + +A+ S+ L VT    ++++  L+ A ++ AG F  LGA F   + +++Y
Sbjct: 1   MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++  F+F++M  D   E     + R   G        A + V     ++  A    +
Sbjct: 61  AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLTRASAPEA 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                      +G +L+  +A  +E++  +LL +++GA  L  R   
Sbjct: 121 APATGAG----LGAILFGPWALAVEVASGLLLAALMGARHLGRRREE 163


>gi|261187255|ref|XP_002620077.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis SLH14081]
 gi|239586520|gb|EEQ69163.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis SLH14081]
 gi|239606194|gb|EEQ83181.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis ER-3]
          Length = 202

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 24/187 (12%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  +   + I+ S   +  +NP+ S+F LI  F++ +     +G EF+ +  L+VYVGAV
Sbjct: 16  FLDIIYIICILFSLYTIISKNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAV 75

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI-------------------- 106
            + FLFI+M+++I I             +    IL   ++                    
Sbjct: 76  SILFLFILMLINIRISELLSDTYNYLPLAMLSVILFIYILGQNIPNNISELGYNKFENLK 135

Query: 107 ----VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
                     +++         +     + +IG +LYT Y+  L I   ILLL+M+G IV
Sbjct: 136 QEYFFNYKEDILYVISLNWDTSLVNNTQISSIGNILYTNYSIWLLILSIILLLAMVGTIV 195

Query: 163 LMLRHRR 169
           + L   +
Sbjct: 196 ITLNKNK 202


>gi|28972932|gb|AAM95266.1| NADH dehydrogenase subunit 6 [Pacifigorgia stenobrochis]
          Length = 120

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178
            N+  IG  LYT Y   + I+  +LL++MIGAI+L                   RQD+  
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDLFL 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|305432366|ref|ZP_07401528.1| NADH-quinone oxidoreductase subunit J [Campylobacter coli JV20]
 gi|304444405|gb|EFM37056.1| NADH-quinone oxidoreductase subunit J [Campylobacter coli JV20]
          Length = 171

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 4/147 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++ L F  FS + +    + V   N +YS+ +L    V  +G + LL AEF+ +I ++VY
Sbjct: 2   IEILAFTFFSVVVLGFFLVAVLSTNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            GAV+  + F +M  D   E  E    KK  FL      +L   +++   +  +      
Sbjct: 62  SGAVLGLYSFAMMFFDSSKEFKEKLRAKKSFFLLVILSAVLLLFMLLGFKHQNIAGDLAL 121

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147
               +F  N  + +   ++++Y    E
Sbjct: 122 SDPNLFDYN--KQLAFAIFSKYLLAFE 146


>gi|221639524|ref|YP_002525786.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter
           sphaeroides KD131]
 gi|221160305|gb|ACM01285.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 precursor
           [Rhodobacter sphaeroides KD131]
          Length = 164

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 4/167 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L     + +A+ S+ L VT    ++++  L+ A ++ AG F  LGA F   + +++Y
Sbjct: 1   MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++  F+F++M  D   E     + R   G        A L V     ++  A    +
Sbjct: 61  AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALLAVPLVLGLLARASAPEA 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                      +G +L+  +A  +E++  +LL +++GA  L  R   
Sbjct: 121 APATGAG----LGAILFGPWALAVEVASGLLLAALMGARHLGRRREE 163


>gi|301058805|ref|ZP_07199791.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [delta
           proteobacterium NaphS2]
 gi|300447090|gb|EFK10869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [delta
           proteobacterium NaphS2]
          Length = 169

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F  +  +    + + V  ++ + ++  LI   +  AG++LLL A F+A + +++YVG V
Sbjct: 8   AFLFYCLIIGAGAVMAVMSKSLVRALVGLIAVMIALAGMYLLLAAPFIAFMQILIYVGGV 67

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            V   F IM+     E  E       LG     +L   +     + ++            
Sbjct: 68  SVLIFFAIMLSKASAEGDETGSVS--LGRAVNALLCLLVPAVIFSVVIIYHPVTTRDAPL 125

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFIL 153
             +    +G+ +   Y  P E+   +L
Sbjct: 126 DVSPA-LLGEGMLGPYLLPFELISVVL 151


>gi|28972948|gb|AAM95274.1| NADH dehydrogenase subunit 6 [Leptogorgia virgulata]
          Length = 120

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGYR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178
            N+  IG  LYT Y   + I+  +LL++MIGAI+L                   RQD+  
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPSSPFLYNSHGESLRSRQDLFL 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|327179837|ref|YP_004327734.1| NADH dehydrogenase subunit 6 [Placozoan sp. 'Shirahama']
 gi|298561256|dbj|BAJ09639.1| NADH dehydrogenase subunit 6 [Placozoan sp. 'Shirahama']
          Length = 278

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 15/105 (14%)

Query: 4   QSLFFYLFSFMAIISSFLVVT---------------VRNPIYSVFSLIFAFVNAAGLFLL 48
           + + F + S + + ++ + +                  N + SVF LI  F+ ++GLF++
Sbjct: 8   EDILFIILSSVTVTAAIMTIRGALVSPASSAVTPTYSYNFLASVFWLILTFIGSSGLFIV 67

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
           LG EF+ +I L+VYVGA+ + FLF+IMM+    +  +  K   F+
Sbjct: 68  LGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGDQKEKETKGYSFI 112



 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 34/64 (53%)

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           AA L +   N ++   +   +     G N+E IG VLY  Y Y   +  FILL++MIGAI
Sbjct: 211 AAALNLAQQNPLLGPNDSFFTLNGSGGTNLEAIGSVLYINYYYAFILVSFILLVAMIGAI 270

Query: 162 VLML 165
           VL  
Sbjct: 271 VLGR 274


>gi|225554147|gb|EEH02512.1| NADH dehydrogenase subunit 6 [Ajellomyces capsulatus G186AR]
          Length = 202

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 24/187 (12%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  +   + I  S   +  +NP+ S+F LI  F++ +     +G EF+ +  L+VYVGAV
Sbjct: 16  FLDIIYIICIFFSLYTIISKNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAV 75

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114
            + F+FI+M+++I I             +    IL   ++       +            
Sbjct: 76  SILFIFILMLINIRISELLSETYNYIPLAMLSVILFIYILGQNIPNNISVLGYNKFENLK 135

Query: 115 ------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
                       +         +     + +IG VLYT Y+  L I   ILLL+M+G IV
Sbjct: 136 QEYFFNYKEDIQYVISLNWDNSLVNNTQISSIGNVLYTNYSIWLLIISIILLLAMVGTIV 195

Query: 163 LMLRHRR 169
           + L   +
Sbjct: 196 ITLNKNK 202


>gi|114177223|gb|ABI53775.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ49]
          Length = 278

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 15/105 (14%)

Query: 4   QSLFFYLFSFMAIISSFLVVT---------------VRNPIYSVFSLIFAFVNAAGLFLL 48
           + + F + S + + ++ + +                  N + SVF LI  F+ ++GLF++
Sbjct: 8   EDILFIILSSVTVTAAIMTIRGALVSPASSAVTPTYSYNFLASVFWLILTFIGSSGLFIV 67

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
           LG EF+ +I L+VYVGA+ + FLF+IMM+    +  +  K   F+
Sbjct: 68  LGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGDQKDKETKGYSFI 112



 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 34/64 (53%)

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           AA L +   N ++   +   +     G N+E IG VLY  Y Y   +  FILL++MIGAI
Sbjct: 211 AAALNLAQQNPLLGPNDSFFTLNGSGGTNLEAIGSVLYINYYYAFILVSFILLVAMIGAI 270

Query: 162 VLML 165
           VL  
Sbjct: 271 VLGR 274


>gi|320449681|ref|YP_004201777.1| NADH-quinone oxidoreductase subunit J [Thermus scotoductus SA-01]
 gi|320149850|gb|ADW21228.1| NADH-quinone oxidoreductase, subunit J [Thermus scotoductus SA-01]
          Length = 179

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 4/137 (2%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
            +  LVVT++N I++  +LI  F+  AGL++ L A F+  I ++VY GA++V FLF+IM+
Sbjct: 14  FTGVLVVTLKNAIHAALALIGNFLVLAGLYVALEARFLGFIQIIVYAGAIVVLFLFVIML 73

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
           L                    +  L   L++ +  + V  A  +      +G   + +G 
Sbjct: 74  LYAAQGEVGFDPLVRSRPLAALLALGVALVLLSGLWGVNLAFTK----DLQGGLPQALGP 129

Query: 137 VLYTQYAYPLEISGFIL 153
           +LY  + + L   GF+L
Sbjct: 130 LLYGDWLFVLLAVGFLL 146


>gi|240272796|gb|EER36347.1| NADH-ubiquinone oxidoreductase chain 6 [Ajellomyces capsulatus
           H143]
 gi|325087325|gb|EGC40635.1| NADH-ubiquinone oxidoreductase chain 6 [Ajellomyces capsulatus H88]
          Length = 202

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 24/187 (12%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  +   + I  S   +  +NP+ S+F LI  F++ +     +G EF+ +  L+VYVGAV
Sbjct: 16  FLDIIYIICIFFSLYTIISKNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAV 75

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114
            + F+FI+M+++I I             +    IL   ++       +            
Sbjct: 76  SILFIFILMLINIRISELLSETYNYIPLAMLSVILFIYILGQNIPNNISVLGYNKFENLK 135

Query: 115 ------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
                       +         +     + +IG VLYT Y+  L I   ILLL+M+G IV
Sbjct: 136 QEYFFNYKENIQYVISLNWDNSLVNNTQISSIGNVLYTNYSIWLLIISIILLLAMVGTIV 195

Query: 163 LMLRHRR 169
           + L   +
Sbjct: 196 ITLNKNK 202


>gi|114177239|gb|ABI53790.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ2423]
          Length = 301

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 15/109 (13%)

Query: 4   QSLFFYLFSFMAIISSFLVVT---------VRNPIYS------VFSLIFAFVNAAGLFLL 48
           + + F   S + +I++ + ++            PIYS      VF LI AF+ ++GLF++
Sbjct: 8   EDVLFATLSSITVIAAIMTISSGATPKKSSAVTPIYSHNFLASVFWLILAFIGSSGLFIV 67

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97
           LG EF+ +I L+VYVGA+ + FLF+IMM+     +  P  +R      +
Sbjct: 68  LGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGSFLGAPTLERRSAPDLW 116



 Score = 62.0 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +      +N+E IG VLY  Y Y   +  FILL++MIGAIVL L+
Sbjct: 251 FAPSAPGCSNLEAIGAVLYINYYYAFILVSFILLVAMIGAIVLGLQ 296


>gi|94962399|gb|ABF48517.1| NADH dehydrogenase subunit 6 [Trichoplax adhaerens]
          Length = 308

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 15/90 (16%)

Query: 4  QSLFFYLFSFMAIISSFLVVT---------VRNPIYS------VFSLIFAFVNAAGLFLL 48
          + + F + S + +I++ + ++            PIYS      VF LI AF+ ++GLF++
Sbjct: 8  EDVLFIILSSITVIAAIMTISSGAIPKQSSAVTPIYSHNFLASVFWLILAFIGSSGLFIV 67

Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
          LG EF+ +I L+VYVGA+ + FLF+IMM+ 
Sbjct: 68 LGMEFLGLIFLIVYVGAICIIFLFVIMMIP 97



 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           G+N+E IG VLY  Y Y   +  FILL++MIGAIVL L+
Sbjct: 265 GSNLEAIGSVLYINYYYVFILVSFILLVAMIGAIVLGLQ 303


>gi|164422132|ref|YP_001648746.1| NADH dehydrogenase subunit 6 [Mycosphaerella graminicola]
 gi|155964395|gb|ABU40262.1| NADH dehydrogenase subunit 6 [Mycosphaerella graminicola]
          Length = 225

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 47/204 (23%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F +II   LV+  +NP+ SV  LI  F+N AG  ++LG  F+ +  L+VYVGAV + 
Sbjct: 22  IITFASIICGILVIISKNPVVSVLFLIGLFLNIAGYLMMLGINFIGLSYLLVYVGAVSIL 81

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV---------------------- 107
           FLFI+M++++ I             +  IG +    +                       
Sbjct: 82  FLFILMLINVRISELVTDNNNSIPLAIMIGSIFNLTLYKLLPNNFSSNEYGFVPHKLGSL 141

Query: 108 -------------------------CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142
                                      +N + F +      ++ + +++ +IG VLYT Y
Sbjct: 142 SDKSLLEAQTLAGDNMGSNLYNAYNVHNNNLSFVSSHIWDGVLSETSHITSIGNVLYTAY 201

Query: 143 AYPLEISGFILLLSMIGAIVLMLR 166
              L ++  ILLL+M+GAIV+ ++
Sbjct: 202 PLWLILTSIILLLAMVGAIVITIK 225


>gi|87306368|ref|ZP_01088515.1| NADH Dehydrogenase I Chain J [Blastopirellula marina DSM 3645]
 gi|87290547|gb|EAQ82434.1| NADH Dehydrogenase I Chain J [Blastopirellula marina DSM 3645]
          Length = 245

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 52/107 (48%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           +   ++FFYL SF+A   +  +V   N +   F L+ +    +GL  L GA FV  + L+
Sbjct: 12  INWHTVFFYLTSFIACGFALAMVVSSNVVRMAFFLVLSLAATSGLIFLTGAHFVGAMQLM 71

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +YVG  +V  +F +M+      ++   K   ++ +  +G     L+ 
Sbjct: 72  IYVGGTVVLLIFGVMLTAQQAFISMKTKAGDWILALIVGGSLLALLT 118


>gi|283780915|ref|YP_003371670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula
           staleyi DSM 6068]
 gi|283439368|gb|ADB17810.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula
           staleyi DSM 6068]
          Length = 370

 Score = 75.8 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 63/187 (33%), Gaps = 21/187 (11%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F LF+ +A   +  V    N +   F L  +    +GLF L GAEFV  + L++YVG  
Sbjct: 28  LFVLFALLACGFAIAVAASSNIVRMAFYLTLSLGATSGLFFLAGAEFVGAMQLMIYVGGT 87

Query: 67  IVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +V  +F +M+         +       L +     L   L   A     ++        V
Sbjct: 88  LVLLIFGVMLTAQARFVSMQTSAGEWVLAAVLGSSLLLLLFRSALGVPSWTTPRPDPENV 147

Query: 126 --FKGNNVENIGKVL------------------YTQYAYPLEISGFILLLSMIGAIVLML 165
                +    IG  L                     Y  P  +    LL+ +IGA  +  
Sbjct: 148 VLADAHTSTEIGTALAGVRVDKLEQANEALIPGMAGYLMPFVVISMHLLVVLIGAGYMAR 207

Query: 166 RHRRDIK 172
             R   K
Sbjct: 208 TKRARSK 214


>gi|332558536|ref|ZP_08412858.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides WS8N]
 gi|332276248|gb|EGJ21563.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides WS8N]
          Length = 164

 Score = 75.8 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L     + +A+ S+ L VT    ++++  L+ A ++ AG F  LGA F   + +++Y
Sbjct: 1   MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++  F+F++M  D   E     + R   G        A + V     ++       +
Sbjct: 61  AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLARTSAPEA 120

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
                      +G +L+  +A  +E++  +LL +++GA  L  R   
Sbjct: 121 APATGAG----LGAILFGPWALAIEVASGLLLAALMGARHLGRRREE 163


>gi|315638071|ref|ZP_07893256.1| NADH-quinone oxidoreductase subunit J [Campylobacter upsaliensis
           JV21]
 gi|315481919|gb|EFU72538.1| NADH-quinone oxidoreductase subunit J [Campylobacter upsaliensis
           JV21]
          Length = 172

 Score = 75.4 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 2/166 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           ++ L F +FS + +    + V  +N +YS+ +L    V  +  + +L AEF+  I ++VY
Sbjct: 2   IEQLSFIVFSVLILGFFLVAVLSKNMLYSLSALAGGMVFLSSFYFMLDAEFLGAIQIIVY 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GAV+  + F +M  D   +  E  K +    +  IG+    L     +F + S   +L 
Sbjct: 62  SGAVLGIYSFAMMFFDASKDFKERLKFKKSFFAL-IGLSLVGLFASLMSFKLNSVNVDLP 120

Query: 123 RLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            +     ++ + +   ++++Y    E    +LL++++ AIVL  + 
Sbjct: 121 FIDTALFDLNKQLAFAIFSKYLLAFEFVALLLLIALVCAIVLTHKE 166


>gi|110639003|ref|YP_679212.1| NADH:ubiquinone oxidoreductase subunit J [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110281684|gb|ABG59870.1| NADH dehydrogenase subunit J [Cytophaga hutchinsonii ATCC 33406]
          Length = 172

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F+ F+   + S+ +++  RN +Y+  +L+ + +  A LF++ G++ +A++ LVVY
Sbjct: 1   MIEIVFFFFAIQLLSSALVILFTRNVVYAAIALMSSLLGVAALFVIAGSDLLAVVQLVVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VG V++  LF ++    D E +   KK   L    + +LA  L+   S+      +   S
Sbjct: 61  VGGVLILLLFGVLYTYRDPE-SYFEKKHILLSIVTVVVLAVGLLFLLSDLSFKYPQLHTS 119

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
               KG   +  G +  T++    E+    LL+ ++GA
Sbjct: 120 PYDEKGI-TKYTGYLWITEHIVVFEVVAIFLLVVLVGA 156


>gi|28972946|gb|AAM95273.1| NADH dehydrogenase subunit 6 [Phyllogorgia dilatata]
          Length = 120

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLIQQPNKVDSQDYSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGFR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178
            N+  IG  LYT Y   + I+  +LL++MIGAI+L                   RQD+  
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDLFL 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|218295769|ref|ZP_03496565.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermus
           aquaticus Y51MC23]
 gi|218243928|gb|EED10455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermus
           aquaticus Y51MC23]
          Length = 177

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 4/128 (3%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           RN I++  +LI  F+  AG+++ L A F+  I ++VY GA++V FLF+IM+L        
Sbjct: 23  RNAIHAALALILNFLVLAGVYVALDARFLGFIQIIVYAGAIVVLFLFVIMLLFAAQGEIG 82

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145
                       +  L    ++ +  + +    G+      +G   + +G +LY  + + 
Sbjct: 83  FDPLVRARPLAALLALGVAALLLSGLWGLKLTLGK----DLQGGLPQALGPLLYGDWLFV 138

Query: 146 LEISGFIL 153
           L   GF+L
Sbjct: 139 LLAVGFLL 146


>gi|282881436|ref|ZP_06290110.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304662|gb|EFA96748.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella
           timonensis CRIS 5C-B1]
          Length = 146

 Score = 74.3 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 4/143 (2%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           + +   LIF     AG++ LLG  ++    + +Y G + + ++F I ++           
Sbjct: 1   MRAATFLIFVLFGVAGIYFLLGYTYLGAAQIAIYAGGITILYIFAIQLVSKRTLQGLVEH 60

Query: 89  KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT----QYAY 144
            +G        +    L       +      + +++      +  IG+ L      QY  
Sbjct: 61  LKGSRVIQGALLSLIGLATVLGVLVKNQFIHQATQVADAEVPMNVIGQALVGSEKYQYVL 120

Query: 145 PLEISGFILLLSMIGAIVLMLRH 167
           P E+    LL  +IG +++  + 
Sbjct: 121 PFELISVFLLACIIGGLLIARKE 143


>gi|55980062|ref|YP_143359.1| NADH-quinone oxidoreductase subunit 10 [Thermus thermophilus HB8]
 gi|2499299|sp|Q56225|NQO10_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 10; AltName:
           Full=NADH dehydrogenase I chain 10; AltName: Full=NDH-1
           subunit 10
 gi|1279870|gb|AAA97947.1| NADH dehydrogenase I, subunit NQO10 [Thermus thermophilus]
 gi|55771475|dbj|BAD69916.1| NADH-quinone oxidoreductase chain 10 [Thermus thermophilus HB8]
          Length = 176

 Score = 74.3 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 4/128 (3%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           RN I++  +LI  F+  AG+++ L A F+  I ++VY GA++V FLF+IM+L        
Sbjct: 23  RNAIHAALALILNFLVLAGVYVALDARFLGFIQVIVYAGAIVVLFLFVIMLLFAAQGEIG 82

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145
                       +  L    I+ A  + +  A  +      KG   + +G +LY  + + 
Sbjct: 83  FDPLVRSRPLAALLALGVAGILAAGLWGLDLAFTQ----DLKGGLPQALGPLLYGDWLFV 138

Query: 146 LEISGFIL 153
           L   GF+L
Sbjct: 139 LLAVGFLL 146


>gi|256593098|gb|ACV03505.1| NADH dehydrogenase subunit 6 [Acanella eburnea]
 gi|256593101|gb|ACV03507.1| NADH dehydrogenase subunit 6 [Orstomisis crosnieri]
 gi|256593104|gb|ACV03509.1| NADH dehydrogenase subunit 6 [Gorgonisis sp. SCF-2009]
 gi|256593107|gb|ACV03511.1| NADH dehydrogenase subunit 6 [Pteronisis incerta]
 gi|256593110|gb|ACV03513.1| NADH dehydrogenase subunit 6 [Plexipomisis sp. SCF-2009]
 gi|256593113|gb|ACV03515.1| NADH dehydrogenase subunit 6 [Primnoisis cf. deliculata SCF-2009]
          Length = 90

 Score = 74.3 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 55/87 (63%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4  LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFL 93
           + FLF+IM++    +V          
Sbjct: 64 AILFLFVIMLIQQPNKVDSQDHSHFLP 90


>gi|11465931|ref|NP_050064.1| NADH dehydrogenase subunit 6 [Pedinomonas minor]
 gi|4378775|gb|AAD19673.1| NADH dehydrogenase subunit 6 [Pedinomonas minor]
          Length = 190

 Score = 74.3 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 8/193 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSF-LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59
           M M +    LFS     +     +  +N I     ++ +F+ A  ++LL    F+ +I +
Sbjct: 1   MEMFTELIILFSLTFFFNLLSKTILTKNAILVALYIVGSFILAGLIYLLANFPFLGVILI 60

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +VYVGAV+V FLF+IMM+ + I   E      F   F   +L   L+   S+F + S   
Sbjct: 61  LVYVGAVVVLFLFVIMMIPLRIVFFENNFSIFFFNYFLWTVL---LVFFFSSFDILSTSF 117

Query: 120 ELSRLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDIS 177
           EL  +     N+ + +  ++Y    +    + F+L +SMIGAI +          ++ I+
Sbjct: 118 EL--IFQSRTNLFQLLALIIYLDNVWYFLFAAFLLTISMIGAISITQTKSVNKNFKEIIN 175

Query: 178 KQLESNPDNSIVM 190
            QL  N  +  V+
Sbjct: 176 IQLNKNYKSDFVL 188


>gi|17063207|gb|AAL32512.1| NADH dehydrogenase subunit 6 [Daucus carota]
          Length = 121

 Score = 74.3 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 58/106 (54%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   + S +A++S+ +VV  +NP++SV   I  F N +GL LLLG +F AMI  VVY+GA
Sbjct: 1   MILSVLSSLALVSALMVVRAKNPVHSVSFSIPVFRNTSGLLLLLGLDFFAMIFPVVYIGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V FLF+ MM  I I        R    S  IG++    +    N
Sbjct: 61  IAVSFLFVGMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILN 106


>gi|51245167|ref|YP_065051.1| NADH dehydrogenase, subunit 6 [Desulfotalea psychrophila LSv54]
 gi|50876204|emb|CAG36044.1| probable NADH dehydrogenase, subunit 6 [Desulfotalea psychrophila
           LSv54]
          Length = 177

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 63/145 (43%), Gaps = 4/145 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F +   + ++   +         ++          AGL+  L + F++M+ +++Y+GA
Sbjct: 14  LVFLVTIAITLVGGLITCLAHKLFRALCGFALTSTGVAGLYFFLNSPFISMMQILIYIGA 73

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V +   F +M+   D   +  + +     +  IG   + ++  A  F+V  A+  +   +
Sbjct: 74  VSITISFGVMLASPD---SIKKMQPIKPLAGPIGFAVSGMLAGALMFLVTRADWPIMAKI 130

Query: 126 FKGNNVENIGKVLYTQYAYPLEISG 150
             G+ +  IG  L TQY+   E+  
Sbjct: 131 TDGS-MRTIGIELLTQYSLVFELIS 154


>gi|58578583|ref|YP_203329.1| NADH dehydrogenase subunit 6 [Smittium culisetae]
 gi|57339027|gb|AAW49496.1| NADH dehydrogenase subunit 6 [Smittium culisetae]
          Length = 170

 Score = 73.5 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
             + +  I   L+    NPIYSV SLI  F+    LF+  G  F+ +   ++YVGA+ + 
Sbjct: 6   FINILIFIFGLLIFLFINPIYSVLSLISVFILTGILFIFYGLTFIGLSYFIIYVGAISIL 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS---RLVF 126
           F+F IMML+ D                  GIL   +        + + +  +S    + F
Sbjct: 66  FIFAIMMLETDFPSTIKYLDLKKDIPLITGILCILIYYYLDLSYINNNKNIISGINNIYF 125

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
             +N++ IG  LYT +   L +  FILLL+MIG I+L L+  ++
Sbjct: 126 YSSNIKLIGYCLYTTHCLWLILISFILLLAMIGPIILCLKMNKN 169


>gi|162148246|ref|YP_001602707.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786823|emb|CAP56406.1| putative NADH-quinone oxidoreductase chain J [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 168

 Score = 73.5 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  ++ F L + + ++++F+ VT  N ++++  L+   +  AG+F  LGA F AM+ ++
Sbjct: 1   MMDMNVSFALSALVVVLAAFMTVTRANAVHALLYLVVLLLALAGIFFQLGAPFAAMLEVI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y GA++V F+F++MML++     + R++   +   +IG +    ++ A+     +    
Sbjct: 61  IYAGAIMVLFVFVVMMLNL-GATDQRRERAWIVPRVWIGPVLLAGVLLAALLRALAVTAP 119

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSM 157
                  G     +G VLY  YA  +E++ F+LL  +
Sbjct: 120 AGGGGPIG--PAQVGLVLYGPYALTVELASFLLLAGL 154


>gi|295697427|ref|YP_003590665.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           tusciae DSM 2912]
 gi|295413029|gb|ADG07521.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus
           tusciae DSM 2912]
          Length = 172

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + F+L + +AI  +FL+   +  ++ V S+  +F++ AGLF +LGAEF+ +  L+
Sbjct: 1   MAQNVITFFLLAGVAIAGAFLMFRSKRIVHMVLSIALSFLSLAGLFAVLGAEFLFVAQLI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY GA+ +  +F IM+   +                    L    ++         A G+
Sbjct: 61  VYSGAITILAVFSIMLTRHEPAGPAVGAAGFKRWFRLAVPLGLFALLAWIILDTPIAVGQ 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147
           L+ ++   N  E +      +Y    E
Sbjct: 121 LTEVIGPMNMAEAL---FAPRYLLSFE 144


>gi|330339456|ref|YP_004376365.1| NADH dehydrogenase subunit 6 [Moniliophthora roreri]
 gi|308912823|gb|ADO51570.1| NADH dehydrogenase subunit 6 [Moniliophthora roreri]
          Length = 207

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +L   + +F  ++S    +T +NP+ SV  LI  FV +AG  +L+G  F+ +  ++VY
Sbjct: 1   MTTLLINILAFATLLSGIFSITSKNPVISVLFLIGTFVLSAGYLILIGINFIGISYIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V FLF+IMM++I +          +  +  + +    L +     ++      + 
Sbjct: 61  VGAIAVLFLFVIMMINIKLTDI-LETGSQYTKTLPLALAVGSLFIFIIFSIIKFNYNNVP 119

Query: 123 RLVFKGNNVENIGKVLYTQYAY 144
            L    + +      L++ Y  
Sbjct: 120 VLSIFLDKI-TFSNGLFSNYYI 140


>gi|292385595|gb|ADE22119.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
 gi|292385599|gb|ADE22122.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
 gi|292385603|gb|ADE22125.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           + V  LF++MMLD+         K+       I +    LI   
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFGFFLIAVI 108


>gi|3122566|sp|Q36836|NU6M_TRIRU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1017449|emb|CAA61356.1| ND6 [Trichophyton rubrum]
          Length = 203

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 23/177 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F++II     +  +NP+ SV  LI  F   +   +++G  F+ +  L+VY+GAV + 
Sbjct: 21  ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLIMIGLTFIGLSYLLVYIGAVSIL 80

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSF-----FIGILAAELIVCASNFMV---------- 114
           FLFI+M+++I I             +       + IL  ++I     F +          
Sbjct: 81  FLFILMLINIRISELVSTNNNYIPLAILSMITLVYILGQKIITNVVQFNILNSFTSSLFE 140

Query: 115 --------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                   +S        +    +   IG ++Y+ Y++ L I   ILLL+M+G+IV+
Sbjct: 141 KSFKESINYSNSLSWDTNLIDITHTSAIGNIMYSSYSFWLIIISLILLLAMVGSIVI 197


>gi|49147020|ref|YP_025876.1| NADH dehydrogenase subunit 6 [Moniliophthora perniciosa]
 gi|34538665|gb|AAQ74273.1| NADH dehydrogenase subunit 6 [Moniliophthora perniciosa]
          Length = 207

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 2/142 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +L   + +F  ++SS   +T +NP+ SV  LI  FV +AG  +L+G  F+ +  ++VY
Sbjct: 1   MTTLLINILAFATLLSSIFSITSKNPVISVLFLIGTFVLSAGYLILIGINFIGISYIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V FLF+IMM++I +          +  +  + +    L +     ++      + 
Sbjct: 61  VGAIAVLFLFVIMMINIKLTDI-LETGSQYTKTLPLALAVGSLFIFIIFSIIKFNYNNVP 119

Query: 123 RLVFKGNNVENIGKVLYTQYAY 144
            L    + +      L++ Y  
Sbjct: 120 VLSILLDKI-TFSNGLFSNYYI 140


>gi|209542886|ref|YP_002275115.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530563|gb|ACI50500.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 165

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 83/153 (54%), Gaps = 3/153 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++ F L + + ++++F+ VT  N ++++  L+   +  AG+F  LGA F AM+ +++Y G
Sbjct: 2   NVSFALSALVVVLAAFMTVTRANAVHALLYLVVLLLALAGIFFQLGAPFAAMLEVIIYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A++V F+F++MML++     + R++   +   +IG +    ++ A+     +        
Sbjct: 62  AIMVLFVFVVMMLNL-GATDQRRERAWIVPRVWIGPVLLAGVLLAALLRALAVTAPAGGG 120

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSM 157
              G     +G VLY  YA  +E++ F+LL  +
Sbjct: 121 GPIG--PAQVGLVLYGPYALTVELASFLLLAGL 151


>gi|28972914|gb|AAM95257.1| NADH dehydrogenase subunit 6 [Muricea pinnata]
          Length = 120

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S +   + ++   
Sbjct: 1   LFLFVIMLILQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSK 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185
            N+  IG  LYT Y   + I+  +LL++MIGAI+L  +           K L S  D
Sbjct: 54  TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYNSHGKLLRSRXD 110


>gi|292385591|gb|ADE22116.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVCFLIAVIYS 110


>gi|292385572|gb|ADE22102.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
 gi|292385583|gb|ADE22110.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVCFLIAVIYS 110


>gi|292385587|gb|ADE22113.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVCFLIAVIYS 110


>gi|292385579|gb|ADE22107.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVCFLIAVIYS 110


>gi|77164004|ref|YP_342529.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Nitrosococcus oceani ATCC 19707]
 gi|254435897|ref|ZP_05049404.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Nitrosococcus oceani AFC27]
 gi|76882318|gb|ABA56999.1| NADH dehydrogenase subunit J [Nitrosococcus oceani ATCC 19707]
 gi|207089008|gb|EDZ66280.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
           [Nitrosococcus oceani AFC27]
          Length = 265

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 56/218 (25%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V+Q   F +F+F++I  +  + T  +   S   L+ +F+  AGLF+LL A+ +A++ +++
Sbjct: 6   VLQWAAFGIFAFISIAGALGMATTMSMFRSGIFLMASFIGVAGLFILLLADLLALLQIMM 65

Query: 62  YVGA--VIVFFLF--------IIMMLDIDIEVAEPRKKRGF------------------- 92
           Y+G   V++ F+          +M   + +   E     G                    
Sbjct: 66  YIGGMLVMILFMLLFSGDPGGGMMSTHMRLRGPEWFFSLGLARSPSGTDGNNANDSSDKE 125

Query: 93  ---------------------------LGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
                                              LA  + V     +++     +   +
Sbjct: 126 EDQRDQARDSHQEEGEKEESNDMSMFTPAKRGAAGLALGIGVLLIALLLWRPHWAVVAQM 185

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
              ++   IG +L  +Y    E +G ++LL + GA++L
Sbjct: 186 PDPDSPRRIGHLLMDKYMIAFEGAGLLILLGIFGAVLL 223


>gi|17351909|dbj|BAB78595.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis]
 gi|189304013|gb|ACD85988.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis]
 gi|261498876|gb|ACX84830.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis]
 gi|261888215|gb|ACY06069.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis]
          Length = 162

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  ++   +L + ++I     V   ++P  S+   +  F+N++ + ++LG EF+A++ L+
Sbjct: 1   MFFENCAIFLCALLSIA----VAYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLL 56

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGA+ V FLF+IM+L    E+     +   LG   +GIL   L           + G 
Sbjct: 57  VYVGALAVLFLFVIMLL----EIPATELRAYSLGWSSLGILVFILNGVIQVTPSMGSRGI 112

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
           +S L    + + N+G  LY  +A  L ++ F+L +++ GA  + 
Sbjct: 113 ISGLPGAES-ISNLGHALYLYFADLLILNSFVLTVALFGAFAIA 155


>gi|46200213|ref|YP_005880.1| NADH-quinone oxidoreductase chain J [Thermus thermophilus HB27]
 gi|46197841|gb|AAS82253.1| NADH-quinone oxidoreductase chain J [Thermus thermophilus HB27]
          Length = 179

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 4/128 (3%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           RN I++  +LI  F+  AG+++ L A F+  I ++VY GA++V FLF+IM+L        
Sbjct: 23  RNAIHAALALILNFLVLAGVYVALDARFLGFIQVIVYAGAIVVLFLFVIMLLFAAQGEIG 82

Query: 86  PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145
                       +  L    ++    + +  A  +      KG   + +G +LY  + + 
Sbjct: 83  FDPLVRSKPLAALLALGVAGVLATGLWGLRLAFTQ----DLKGGLPQALGPLLYGDWLFV 138

Query: 146 LEISGFIL 153
           L  +GF+L
Sbjct: 139 LLAAGFLL 146


>gi|160688734|gb|ABX45150.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum]
          Length = 299

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 49/83 (59%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYSV +LI  F   A + ++L  EF+A I ++V VGAV V FLFIIMM++I++   + 
Sbjct: 25  NPIYSVLNLIIIFWCYACILIILDMEFLACIFILVNVGAVAVLFLFIIMMININVVEIKD 84

Query: 87  RKKRGFLGSFFIGILAAELIVCA 109
             K+ +    F+ +    LI   
Sbjct: 85  NLKKYYPFLIFLSLNIIGLISLI 107



 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM--- 164
           A + + F+    +     +  ++++IG  +LY   +    ++  ILL++M+G I +    
Sbjct: 201 ALSLIKFTQYENIYERFVQTTDIKHIGSNLLYASNSIWFILACLILLVAMVGVIYITEEL 260

Query: 165 --LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199
              R   + K Q++ +Q+  +   +I    VK  K I
Sbjct: 261 LIKRRLENNKSQNLFEQISKDYITNIKFYDVKVTKKI 297


>gi|292385576|gb|ADE22105.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 286

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVCFLIAVIYS 110


>gi|292385544|gb|ADE22081.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia]
          Length = 311

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +    LI    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKHFLYLGILLFVFFLIAVIYS 110


>gi|289582896|ref|YP_003481362.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Natrialba
          magadii ATCC 43099]
 gi|289532449|gb|ADD06800.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Natrialba
          magadii ATCC 43099]
          Length = 96

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M  + + F LF+F+ + S   VV + +P +S   L  A ++ A  F++  AEFVAM+ ++
Sbjct: 1  MTYELIAFTLFAFITLASGLGVVLLEDPWHSALMLGVALMSIAVHFVMQAAEFVAMMQVL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85
          VYVG V++   F +M+        E
Sbjct: 61 VYVGGVLILITFAVMLTQHKGATDE 85


>gi|74310557|ref|YP_313641.1| NADH dehydrogenase subunit 6 [Epidermophyton floccosum]
 gi|58429685|gb|AAW78247.1| NADH dehydrogenase subunit 6 [Epidermophyton floccosum]
          Length = 199

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 20/174 (11%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + + ++I+     +  +NP+ SV  LI  F   +   +L+G  F+ +  L+VY+GAV + 
Sbjct: 22  ILALISIMFGIYTIVCKNPVISVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSIL 81

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--------------------CA 109
           FLFI+M+++I I             +    I    ++                       
Sbjct: 82  FLFILMLINIRISELVSTNNNYIPLAVLSMITLVYILGQKVITNVVQLNTFSSSLFEKSF 141

Query: 110 SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
             ++ +S        +    +   IG ++Y+ Y+  L I   ILLL+M+G+IV+
Sbjct: 142 KEWINYSNSLSWDTNLIDITHTSAIGNIMYSNYSLWLIIISLILLLAMVGSIVI 195


>gi|158251753|ref|YP_001504367.1| NADH dehydrogenase subunit 6 [Pleurotus ostreatus]
 gi|122893354|gb|ABM67626.1| NADH dehydrogenase subunit 6 [Pleurotus ostreatus]
          Length = 206

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + F  + +   + SS   +T +NP+ S+  +I  FV AAG  + +G  F+ +  +V+Y
Sbjct: 1   MTTFFVNILALGTLFSSVFAITSKNPVISIIFVIATFVQAAGYLIFIGVNFIGISYIVIY 60

Query: 63  VGAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           VGA+ V FLF+IMM++I   DI     +  +    +  IG L   +I     F + +   
Sbjct: 61  VGAIAVLFLFVIMMINIKLTDILETGNQYTKNLPLALAIGSLFTYVIFTIIPFNLNNVPA 120


>gi|118576849|ref|YP_876592.1| NADH-ubiquinone oxidoreductase, subunit J [Cenarchaeum symbiosum A]
 gi|118195370|gb|ABK78288.1| NADH-ubiquinone oxidoreductase, subunit J [Cenarchaeum symbiosum A]
          Length = 159

 Score = 71.2 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 4/154 (2%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           M I S+   + +R+ IYS  +L+      AG F LL + FVA+  + VYVG++ V  LF 
Sbjct: 1   MTIGSAIAALEMRSLIYSSIALMGTLGGIAGFFFLLDSPFVALFQIAVYVGSIAVLILFT 60

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133
           +M++  ++   +   +R  L    + ++    +          A  E    V        
Sbjct: 61  VMLVKRELIFTKVEDRRRRLAGVGLMLVFMTAVGGIFLDSGIRAVTEGGGPVDFT----E 116

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
           +G    T Y   L +   IL  S+ G++VL  R 
Sbjct: 117 VGADFLTYYWPALILMALILAGSVTGSLVLARRE 150


>gi|11465920|ref|NP_046137.1| NADH dehydrogenase subunit 6 [Chlamydomonas moewusii]
 gi|2865266|gb|AAC39349.1| NADH dehydrogenase subunit 6 [Chlamydomonas moewusii]
          Length = 171

 Score = 71.2 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 9/154 (5%)

Query: 19  SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           +  V   R+P  S+   +  F+NA+ + L+LG EF+A++ ++VYVGA+ V FLF+IM+L+
Sbjct: 16  AISVSWTRSPFMSLMFAVMLFINASIVLLMLGFEFLALVNMLVYVGALAVLFLFVIMLLE 75

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--------SAEGELSRLVFKGNN 130
           I          RG+      GIL        +             S    ++  V    +
Sbjct: 76  IPSAELRAYH-RGWSTLALFGILGCWRYASVAPITKTGALMDTFKSPIMSVAGFVPTLES 134

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
           +  +G   Y +YA  L I+  +L +++ GA+VL 
Sbjct: 135 INYVGHAFYIRYADVLIINSLVLTVALFGALVLA 168


>gi|114707867|ref|ZP_01440760.1| hypothetical protein FP2506_00140 [Fulvimarina pelagi HTCC2506]
 gi|114536645|gb|EAU39776.1| hypothetical protein FP2506_00140 [Fulvimarina pelagi HTCC2506]
          Length = 199

 Score = 71.2 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 4/169 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  L F   S +AI+S + V    + + + F L+ +FV    + ++L A ++ + T+ 
Sbjct: 1   MGLTDLLFLALSAVAILSGWRVFATDSMVRASFLLLLSFVAVGLIIVMLAAPYIGVATVF 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +    ++V  LF++M +     +           S   G+LA   +  A  F  F     
Sbjct: 61  MMAVEMMVMALFMVMFMMNPAGLNPMMMVHQHRFSIVAGVLAFAGLTAAILFTSFPKI-- 118

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              +      V ++G  L        E +G  LL +MIG+++L  R  R
Sbjct: 119 --PVDPSTPVVHDLGIELLGPSMLIFETAGVTLLATMIGSVILSSRSGR 165


>gi|46205959|ref|ZP_00210109.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J)
          [Magnetospirillum magnetotacticum MS-1]
          Length = 221

 Score = 70.8 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 44/76 (57%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +   F   +F+A+  +  + T  +   S   L+ +F+  AGLF+LL A+ + ++ +++Y
Sbjct: 5  FELTAFATCAFVAVAGALGMTTTMSMFRSGIFLMASFIGVAGLFILLSADLIGLLQVMMY 64

Query: 63 VGAVIVFFLFIIMMLD 78
          +G  +V  LF+++++ 
Sbjct: 65 IGGFLVMILFMVLVMH 80


>gi|292385457|gb|ADE22016.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 70.8 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +  +  I    +
Sbjct: 65  IAVLVLFVVMMLDVKATERPWSVKKKRFFYLGILLFFSFSIAVIYS 110


>gi|240266491|ref|YP_002970846.1| NADH dehydrogenase subunit 6 [Arthroderma uncinatum]
 gi|237781107|gb|ACR19599.1| NADH dehydrogenase subunit 6 [Arthroderma uncinatum]
          Length = 201

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 23/181 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F++II     +  +NPI SV  LI  F   +   +L+G  F+ +  L+VY+GAV + 
Sbjct: 21  VLAFISIIFGIYTIISKNPIVSVLFLIALFSTISVYLILIGLTFIGLSYLLVYIGAVSIL 80

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI----------VCASNFMVFSAEG 119
           FLFI+M+++I I             +    I    ++          +   N   +S   
Sbjct: 81  FLFILMLINIRISELLSTNNNYIPLAILSMITLVYILGQKIIRTVIQLNILNLFSWSFYE 140

Query: 120 ELSRLVFKGNN-------------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           E  + +   +N             +  IG ++Y+ Y+  L +   ILLL+MIG+IV+ + 
Sbjct: 141 ETLKEIINYSNSINWDSNLIDITHINAIGNIMYSNYSLWLIMISLILLLAMIGSIVITIG 200

Query: 167 H 167
            
Sbjct: 201 R 201


>gi|11466304|ref|NP_051132.1| NADH dehydrogenase subunit 6 [Cafeteria roenbergensis]
 gi|6180086|gb|AAF05783.1|AF193903_6 NADH dehydrogenase subunit 6 [Cafeteria roenbergensis]
          Length = 250

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 19/155 (12%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           N I+S+  L+  F+  + L      EF+ +I L++Y+GA++V FLF++MMLDI     + 
Sbjct: 26  NTIHSLLLLLELFIIGSLLLFFFKVEFLGLIFLMIYLGAILVLFLFVVMMLDIKTTAVQN 85

Query: 87  RKKRGF----LGSFFIGILAAELIVCASNFMVFSAEG---------------ELSRLVFK 127
                F    LG FF   +    I     F+    +                +  +L+  
Sbjct: 86  DDLNQFIFKGLGLFFFIPVFVWWIFGDVIFLSAMWQSFVKTAVHWSFSLSILDFFQLINF 145

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
            +N+E +G  ++        + G IL ++MIGAIV
Sbjct: 146 SSNLEVVGWYIFDFQPILFLLCGVILYIAMIGAIV 180


>gi|292385615|gb|ADE22134.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           + V  LF++MMLD+  IE     KK+ FL    +  +   + V  S
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILFFVFFLIAVLYS 110


>gi|292385611|gb|ADE22131.1| NADH dehydrogenase subunit 6 [Lessonia variegata]
          Length = 311

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           + V  LF++MMLD+  IE     KK+ FL    +  +   + V  S
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILFFVFFLIAVIYS 110


>gi|38639908|ref|NP_943719.1| NADH dehydrogenase subunit 6 [Penicillium marneffei]
 gi|33860262|gb|AAQ54920.1| NADH dehydrogenase subunit 6 [Penicillium marneffei]
          Length = 194

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 27/188 (14%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   ++I+   L++  +NPI SV  LI  FVN + L +L+G  F+ +  ++VYVGAV + 
Sbjct: 7   IIYLLSIVFGVLIIINKNPIISVLYLIGLFVNISVLLILVGFGFIGLSYILVYVGAVSIL 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAEGELSRLVFK 127
           FLFI+M+++I I             +    +L   L+  +   NF++ +     S ++  
Sbjct: 67  FLFILMLINIRISELTNETSNYTPLAILTVMLFYFLVGRILPGNFILLNTNLVNSYIIDT 126

Query: 128 GNN-------------------------VENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
             N                         +  IG V+YT YA  L I+  ILLL+M+G+IV
Sbjct: 127 YVNEHIYDELIQYASSKSWDTSLVDMTHITGIGNVMYTNYAILLIIASIILLLAMVGSIV 186

Query: 163 LMLRHRRD 170
           +  +  + 
Sbjct: 187 ITKKGDKR 194


>gi|254032055|ref|YP_001023823.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ2423]
          Length = 277

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 49/80 (61%)

Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          S+   +   N + SVF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+
Sbjct: 13 SAVTPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMI 72

Query: 78 DIDIEVAEPRKKRGFLGSFF 97
               +  P  +R      +
Sbjct: 73 PGGSFLGAPTLERRSAPDLW 92



 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +      +N+E IG VLY  Y Y   +  FILL++MIGAIVL L+
Sbjct: 227 FAPSAPGCSNLEAIGAVLYINYYYAFILVSFILLVAMIGAIVLGLQ 272


>gi|162009884|gb|ABX82066.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162009893|gb|ABX82074.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162009902|gb|ABX82082.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162009911|gb|ABX82090.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162009920|gb|ABX82098.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162145625|gb|ABX82846.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|162145635|gb|ABX82855.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
          Length = 162

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
            +  + S  V   ++P  S+   +  F+N++ + ++LG EF+A++ L+VYVGA+ V FLF
Sbjct: 9   LLCALLSIAVGYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLF 68

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
           +IM+L+I         +       F+ I+     +  S          +   +    ++ 
Sbjct: 69  VIMLLEIPATELRAYSRGWSTLGIFVFIINGVFQITPSM-----GPRGIITGLPGAESIT 123

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
           N+G  LY  +A  L ++  +L +++ GA  + 
Sbjct: 124 NLGHALYLYFADLLILNSLVLTVALFGAFAIA 155


>gi|3413802|emb|CAA73989.1| NADH dehydrogenase subunit 6 [Chlorogonium elongatum]
          Length = 165

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 6/164 (3%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F L   +A++S FL+    N   S+   +  FVNA  + L LG EF+A++ ++VYVGA+ 
Sbjct: 3   FSLIVLLALLS-FLISWTGNVFMSLMYAVMLFVNATLVLLSLGFEFLALVNMLVYVGALA 61

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V FLF+IM+L+I          RG+    F G++   +          S   + +  ++ 
Sbjct: 62  VLFLFVIMLLEIPSAELR-AYYRGYSVLTFFGLIVVLIKQFGVALPFGSPNSQGAPYIYS 120

Query: 128 GN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
            N    ++ NIG   Y +YA  L ++  +L +++ GA+VL    
Sbjct: 121 FNCTSESISNIGVAFYIRYADVLILNSLVLTIALFGALVLAHSR 164


>gi|86553036|gb|ABC98216.1| NADH dehydrogenase subunit 6 [Chlamydomonas incerta]
          Length = 162

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
            +  + S  V   ++P  S+   +  F+N++ + ++LG EF+A++ L+VYVGA+ V FLF
Sbjct: 9   LLCALLSIAVGYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLF 68

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
           +IM+L+I         +       F+ ++     +  S          +   +    ++ 
Sbjct: 69  VIMLLEIPATELRAYSRGWSTLGIFVFVVNGVFQITPSM-----GPRGIITGLPGAESIT 123

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
           N+G  LY  +A  L ++  +L +++ GA  + 
Sbjct: 124 NLGHALYLYFADLLILNSLVLTVALFGAFAIA 155


>gi|240266460|ref|YP_002970818.1| NADH dehydrogenase subunit 6 [Trichophyton mentagrophytes]
 gi|237781090|gb|ACR19583.1| NADH dehydrogenase subunit 6 [Trichophyton mentagrophytes]
          Length = 201

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 23/177 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F++II     +  +NP+ SV  LI  F   +   +L+G  F+ +  L+VY+GAV + 
Sbjct: 21  ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSIL 80

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSF-----FIGILAAELIVCASNFMV---------- 114
           FLFI+M+++I I             +       + IL  ++I     F +          
Sbjct: 81  FLFILMLINIRISELVSTNNNYIPLAILSMITLVYILGQKIITNVVQFNILNSFTSSLFE 140

Query: 115 --------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                   +S        +    +   IG ++Y+ Y+  L I   ILLL+M+G+IV+
Sbjct: 141 KSFKESINYSNSLSWDTNLIDITHTSAIGNIMYSSYSLWLIIISLILLLAMVGSIVI 197


>gi|240266527|ref|YP_002970874.1| NADH dehydrogenase subunit 6 [Arthroderma obtusum]
 gi|237781129|gb|ACR19620.1| NADH dehydrogenase subunit 6 [Arthroderma obtusum]
          Length = 202

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 23/177 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + + ++II     +  +NP+ SV  LI  F   +   +L+G  F+ +  L+VY+GAV + 
Sbjct: 22  ILALISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLILIGLTFIGISYLLVYIGAVSIL 81

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSF-----FIGILAAELIVCASNFMV---------- 114
           FLFI+M+++I I             +       + IL  ++I     F +          
Sbjct: 82  FLFILMLINIRISELVSTNNNYIPLAILSMITLVYILGQKIITNIVQFNILNSLSSSLFE 141

Query: 115 --------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                   +S        +    +   IG ++Y+ Y+  L I   ILLL+M+G+IV+
Sbjct: 142 KSFKESINYSNSLSWDTNLIDITHTSAIGNIMYSSYSLWLIIISLILLLAMVGSIVI 198


>gi|294630838|ref|ZP_06709398.1| NADH dehydrogenase subunit [Streptomyces sp. e14]
 gi|292834171|gb|EFF92520.1| NADH dehydrogenase subunit [Streptomyces sp. e14]
          Length = 142

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F L       ++ + VT +  +++   L+      A  +LLL AEF+A + +++YVG
Sbjct: 17 EIAFLLVGLATFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 76

Query: 65 AVIVFFLFIIMMLDIDIEVAEP 86
          +V+V  LF +M+    I  +  
Sbjct: 77 SVVVLLLFGLMLTKAPIGRSPD 98


>gi|240266713|ref|YP_002970790.1| NADH dehydrogenase subunit 6 [Trichophyton rubrum]
 gi|237781081|gb|ACR19575.1| NADH dehydrogenase subunit 6 [Trichophyton rubrum]
          Length = 201

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 23/177 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + +F++II     +  +NP+ SV  LI  F   +   +++G  F+ +  L+VY+GAV + 
Sbjct: 21  ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLIMIGLTFIGLSYLLVYIGAVSIL 80

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSF-----FIGILAAELIVCASNFMV---------- 114
           FLFI+M+++I I             +       + IL  ++I     F +          
Sbjct: 81  FLFILMLINIRISELVSTNNNYIPLAILSMITLVYILGQKIITNVVQFNILNSFTSSLFE 140

Query: 115 --------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                   +S        +    +   IG ++Y+ Y+  L I   ILLL+M+G+IV+
Sbjct: 141 KSFKESINYSNSLSWDTNLIDITHTSAIGNIMYSSYSLWLIIISLILLLAMVGSIVI 197


>gi|254032034|ref|YP_654089.2| NADH dehydrogenase subunit 6 [Trichoplax adhaerens]
          Length = 284

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          S+   +   N + SVF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+
Sbjct: 13 SAVTPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMI 72

Query: 78 D 78
           
Sbjct: 73 P 73



 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           G+N+E IG VLY  Y Y   +  FILL++MIGAIVL L+
Sbjct: 241 GSNLEAIGSVLYINYYYVFILVSFILLVAMIGAIVLGLQ 279


>gi|15147304|ref|NP_150308.1| NADH dehydrogenase subunit 6 [Spizellomyces punctatus]
 gi|15100073|gb|AAK84237.1|AF404303_11 NADH dehydrogenase subunit 6 [Spizellomyces punctatus]
          Length = 260

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 51/95 (53%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M      +YL     ++S+ +V +  NPI+ +  LI  F++ + L ++L   F+ +  ++
Sbjct: 1  MSYICYVYYLIGITGLLSALVVASSLNPIHRIAFLILVFLSGSFLMIILDFYFLGLTYII 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS 95
          VYVGA+++ FLF+IMM+ I +           + S
Sbjct: 61 VYVGAIMILFLFVIMMVQIHLMPVTLSVTPRIISS 95


>gi|292385453|gb|ADE22013.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens]
          Length = 311

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 52/106 (49%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L + +       V + +NP+YS   L+  F+  + +  LLG EF+A++ L+VY GA
Sbjct: 5   IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISXLLGLEFIALLFLLVYAGA 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           + V  LF++MMLD+         K+       I +  +  I    +
Sbjct: 65  IAVLVLFVVMMLDVKAIERPWSVKKKRFFYLGILLFFSFSIAVIYS 110


>gi|254032050|ref|YP_001023812.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ49]
          Length = 254

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          S+       N + SVF LI  F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+
Sbjct: 13 SAVTPTYSYNFLASVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMI 72

Query: 78 DIDIEVAEPRKKRGFL 93
              +  +  K   F+
Sbjct: 73 PGGDQKDKETKGYSFI 88



 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 34/64 (53%)

Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161
           AA L +   N ++   +   +     G N+E IG VLY  Y Y   +  FILL++MIGAI
Sbjct: 187 AAALNLAQQNPLLGPNDSFFTLNGSGGTNLEAIGSVLYINYYYAFILVSFILLVAMIGAI 246

Query: 162 VLML 165
           VL  
Sbjct: 247 VLGR 250


>gi|289571365|ref|ZP_06451592.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
          T17]
 gi|289545119|gb|EFD48767.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis
          T17]
          Length = 119

 Score = 68.5 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 48/83 (57%)

Query: 2  VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +++ F++ S +A++ +  VV   N +YS   L    +  A  ++   A F+ ++ +VV
Sbjct: 15 TGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVV 74

Query: 62 YVGAVIVFFLFIIMMLDIDIEVA 84
          Y GAV++ FLF++M++ +D   +
Sbjct: 75 YTGAVMMLFLFVLMLIGVDSAES 97


>gi|188581794|ref|YP_001925239.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Methylobacterium populi BJ001]
 gi|179345292|gb|ACB80704.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Methylobacterium populi BJ001]
          Length = 335

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 45/76 (59%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +   F + +F+A+  +  + T  +   S   L+ +F+  AGLF+LL A+ + ++ +++Y
Sbjct: 5  FELTAFLVCAFVAVAGALGMTTTMSMFRSGIFLMASFIGVAGLFILLSADLIGLLQVMMY 64

Query: 63 VGAVIVFFLFIIMMLD 78
          +G  +V  LF+++++ 
Sbjct: 65 IGGFLVMILFMVLVMH 80



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%)

Query: 100 ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
           +      V     ++  A   +   V   ++   +G +L  +Y    E +GF++L+ + G
Sbjct: 215 LALCVGAVLVGMLVLRPAWPAMPEAVPDADSARRVGHLLMEKYMVAFEGAGFLILIGIFG 274

Query: 160 AIVLML 165
           A++L  
Sbjct: 275 AVLLAR 280


>gi|404356|gb|AAB27397.1| orf100 [Marchantia polymorpha]
          Length = 100

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 2/97 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+F  +A++S  L +  +NP++SV   I  F N  GL +LLG +F AM  LVVYVGA
Sbjct: 2   ILFYVFIILALVSGALGIRAKNPVHSVVFFILVFFNTFGLLVLLGLDFFAMFFLVVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102
             VF LF++MML I IE       R      FIG++ 
Sbjct: 62  --VFILFVVMMLHIRIEEIHENVLRYLPIGGFIGLIF 96


>gi|15088741|ref|NP_150111.1| NADH dehydrogenase subunit 6 [Hyaloraphidium curvatum]
 gi|15077948|gb|AAK83433.1|AF402142_17 NADH dehydrogenase subunit 6 [Hyaloraphidium curvatum]
          Length = 165

 Score = 68.1 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 1/141 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F +     ++S  LV+T R+PI SV  L+  ++   GLFLL+   F+ +  ++VY
Sbjct: 1   MNYWLFQILLISIVVSGLLVMTSRSPINSVIYLVLVYLAGGGLFLLMDHTFLGLTLIIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           VGA+ + FLF + M+++              L       L   L    ++          
Sbjct: 61  VGAIAILFLFTVFMINLRSSTGSNSLNISQLLLILPALGLIFYLGGEQTDSAGLIFAPNW 120

Query: 122 SRLVFKGNNVENIGKVLYTQY 142
           S L+ +   ++ +G +++  Y
Sbjct: 121 SNLLARPQEMQMLGDLIFNSY 141


>gi|11467094|ref|NP_042569.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
 gi|128811|sp|P10329|NU6M_CHLRE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|12507|emb|CAA38644.1| mitochondrial NADH dehydrogenase subunit 6 [Chlamydomonas
           reinhardtii]
 gi|563697|gb|AAB93445.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
          Length = 162

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
            +  + S  V   ++P  S+   +  F+N++ + ++LG EF+A++ L+VYVGA+ V FLF
Sbjct: 9   LLCALLSIAVGYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLF 68

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
           +IM+L+I         +       F+ I+     +  S          +   +    ++ 
Sbjct: 69  VIMLLEIPATELRAYSRGWSTLGIFVFIINGVFQITPSM-----GPRGIITGLPGAESIT 123

Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIG 159
           N+G  LY  +A  L ++  +L +++ G
Sbjct: 124 NLGHALYLYFADLLILNSLVLTVALFG 150


>gi|84508544|ref|YP_448709.1| NADH dehydrogenase subunit 6 [Dictyota dichotoma]
 gi|45925712|gb|AAS79093.1| NADH dehydrogenase subunit 6 [Dictyota dichotoma]
          Length = 273

 Score = 67.7 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           +   F     + +     VV   NP+YS+  L+  FV  + +  L G +++++I ++VY
Sbjct: 2  FELYLFATVMSLFLALGLNVVISHNPVYSILYLVLFFVTGSSILALFGFDYLSLIFVLVY 61

Query: 63 VGAVIVFFLFIIMMLDID 80
          VGA+ V FLF++M+LDI 
Sbjct: 62 VGAIAVLFLFVVMILDIK 79


>gi|73670844|ref|YP_306859.1| NADH dehydrogenase subunit J [Methanosarcina barkeri str. Fusaro]
 gi|72398006|gb|AAZ72279.1| F420H2 dehydrogenase subunit J [Methanosarcina barkeri str.
          Fusaro]
          Length = 96

 Score = 67.7 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 46/85 (54%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          ++   F++ +   +  +  VVT ++ + +  +LI      A L++LL A+F+ +I ++VY
Sbjct: 11 LKMAVFWVLAISTVFFAVFVVTAKDIVRAGLALIMCMFGIAALYILLNAQFLGIIQVLVY 70

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPR 87
          +GA+ V  LF +M+   +I      
Sbjct: 71 IGAIGVLILFAVMLTKHEIGGEPGE 95


>gi|226227800|ref|YP_002761906.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27]
 gi|226090991|dbj|BAH39436.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27]
          Length = 169

 Score = 67.7 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 2/146 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +F  +A++S+  ++ ++ P+    +LI + ++   ++ LLG  F+A   +++YVGA
Sbjct: 1   MILAVFGLLALVSAASMLVLKEPMRVALALITSMMSLGAIYGLLGVHFIAAFQVLIYVGA 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           V+VF +++IM+L +      PR     +     G L    +    +      + EL    
Sbjct: 61  VMVFMVYVIMLLQVRESPNNPRYSSLLVPGLVAGALLLAALAIGMSRPGV-PQAELPASS 119

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGF 151
                 E        +Y    E++  
Sbjct: 120 QSFGLTE-FSTAFLREYWLAFELTSV 144


>gi|240266722|ref|YP_002970902.1| NADH dehydrogenase subunit 6 [Microsporum canis]
 gi|237781138|gb|ACR19628.1| NADH dehydrogenase subunit 6 [Arthroderma otae]
          Length = 201

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 23/177 (12%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + + ++II     +  +NP+ SV  LI  F   +   +L+G  F+ +  L+VY+GAV + 
Sbjct: 21  IIALISIILGIYTIISKNPVVSVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSIL 80

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI----------------------- 106
           FLFI+M+++I I             +    I    ++                       
Sbjct: 81  FLFILMLINIRISELVSTNNNYIPLAILSMITLVYILGQKIITNIIQYNILNSFSFSFFE 140

Query: 107 VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                 + +S        +    ++  IG V+Y+ Y+  L I   ILLL+M+G+IV+
Sbjct: 141 KSFKESINYSNSLSWDTNLIDITHISAIGNVMYSSYSLWLIIISLILLLAMVGSIVI 197


>gi|15088716|ref|NP_150125.1| NADH dehydrogenase subunit 6 [Schizophyllum commune]
 gi|15077923|gb|AAK83409.1|AF402141_13 NADH dehydrogenase subunit 6 [Schizophyllum commune]
          Length = 215

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 59/125 (47%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +      +   + SS L +T +NP+ SV  LI  FV AAG  + +G  F+ +  +++Y
Sbjct: 1   MANFIIDFLALGTLFSSILTITFKNPVISVIFLILTFVQAAGYLIFIGINFIGISYIIIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VGA+ V FLF+IMM+++++                  I+++  +       +   +  + 
Sbjct: 61  VGAIAVLFLFVIMMINLNLSEILETGNEYTKNLPLAIIISSLFMFIFGAPYILPYKSIIL 120

Query: 123 RLVFK 127
             ++ 
Sbjct: 121 PNLWD 125


>gi|21228587|ref|NP_634509.1| NADH dehydrogenase subunit J [Methanosarcina mazei Go1]
 gi|20907081|gb|AAM32181.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
          Length = 96

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 47/79 (59%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          +++  F L + + +  +  VV  ++ + +  +LI      AGL++LL A+F+ +I ++VY
Sbjct: 11 LETAVFGLLALVTVFFAIFVVIAKDVVRAGLALIMCMFGVAGLYILLNAQFLGVIQVLVY 70

Query: 63 VGAVIVFFLFIIMMLDIDI 81
          +GA+ V  LF +M+   +I
Sbjct: 71 IGAIGVLILFAVMLTKREI 89


>gi|316935777|ref|YP_004110759.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Rhodopseudomonas palustris DX-1]
 gi|315603491|gb|ADU46026.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Rhodopseudomonas palustris DX-1]
          Length = 168

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 4/140 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M SL        A+IS+ L VT  N ++++  L+   +  A  F  LGA F A++ ++VY
Sbjct: 1   MSSLLAIYAGAFALISAALSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLILVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F++M L +  E    R++    G++ + +L + LI+    F  F       
Sbjct: 61  AGAIVVLFVFVVMTLPVSPEAI-TRERALLRGAWPVPLLMSVLIIAPFVFGEFGLTAAGQ 119

Query: 123 RLVFKGNNVENIGKVLYTQY 142
                    + +GK+L+  +
Sbjct: 120 PAPVSA---QEVGKLLFGPW 136


>gi|116754361|ref|YP_843479.1| NADH dehydrogenase subunit J [Methanosaeta thermophila PT]
 gi|116665812|gb|ABK14839.1| NADH dehydrogenase subunit J [Methanosaeta thermophila PT]
          Length = 96

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 42/79 (53%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          ++   F   S + +  + L V  RN ++S   LI +F   A L++ L A F+ +  ++VY
Sbjct: 12 IELGVFATLSVLILGLAVLTVYSRNIVHSALYLIGSFAGVAALYISLNAPFLGVAQVLVY 71

Query: 63 VGAVIVFFLFIIMMLDIDI 81
          +GAV V  LF +M+    I
Sbjct: 72 IGAVGVLILFAVMLTRRTI 90


>gi|4761220|gb|AAD29282.1|AF113909_1 NADH dehydrogenase ND6 subunit [Suaeda japonica]
          Length = 146

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 10/120 (8%)

Query: 25  VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84
             NPI+S FSL    V  +  ++L  + FVA   L++YVGA+ V  +F +M ++      
Sbjct: 29  FTNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIYVGAINVLIIFSVMFMN--GPEY 86

Query: 85  EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGK 136
           +       +G     ++   L V  ++ ++ ++   +               N  + IG 
Sbjct: 87  DKNYHLWTVGDGITSLVCTSLFVLLTSTILNTSWYGIIWTTKSNQILEQDLINTSQQIGI 146


>gi|268627911|gb|ACZ13378.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1d]
          Length = 78

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 53/74 (71%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4  LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVYVGAI 63

Query: 67 IVFFLFIIMMLDID 80
           + FLF+IM++   
Sbjct: 64 AILFLFVIMLIQQP 77


>gi|22711916|ref|NP_683855.1| NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum]
 gi|75272576|sp|Q8M9T8|NU6C_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit 6; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 6
 gi|22416920|gb|AAM96520.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chaetosphaeridium
           globosum]
          Length = 179

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
             +  ++  F   + +  VV   N IYS   L   F++ A L+LLLG+EF+++  +++YV
Sbjct: 6   AQITLFVLDFFIFVGALGVVFFNNIIYSALFLGLTFLSVALLYLLLGSEFLSVAQVIIYV 65

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVF 115
           GA+ V  +F IM+++      +        L SF +  +    IV       +
Sbjct: 66  GAINVLIVFAIMLVNKPEFDKKDMIWVPIDLKSFCVNFILFSTIVTMIVTTPW 118


>gi|284164398|ref|YP_003402677.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
          [Haloterrigena turkmenica DSM 5511]
 gi|284014053|gb|ADB60004.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
          [Haloterrigena turkmenica DSM 5511]
          Length = 91

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 50/85 (58%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          ++++ F  F+ + ++S+  VV +  P ++   L  A ++ A  F++L AEFVAM+ ++VY
Sbjct: 2  LETIAFAAFALVTLLSALGVVLLEEPWHAALMLGVALMSIAVHFVMLAAEFVAMMQILVY 61

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPR 87
          VG V+V   F +M+   +   ++  
Sbjct: 62 VGGVLVLITFAVMLTQREDTTSDSE 86


>gi|30315629|ref|NP_847980.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL94]
 gi|30230282|gb|AAO62892.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL94]
          Length = 201

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 34/183 (18%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           F  +  +   LV+  R+PI SV  L   ++   G+FLLL   F+ +  ++VYVGA+ + F
Sbjct: 10  FLVLIGLCGVLVIVSRSPINSVLFLCGMYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILF 69

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------------- 109
           LF I M+++ + +              +   A   I  A                     
Sbjct: 70  LFTIFMINVRLTLQLGSFASPLAAILLLAGFAFYFIFFADLSFSQDLPVLSSLFGSSQTI 129

Query: 110 ---SNFMVFSAEGE----------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156
                 +V S   E           S L+ + +++  +  +++  Y   L + GF+LL+ 
Sbjct: 130 VNNDTTLVTSGNWESNFRSIYASDWSHLLGRPSDLTMLANMIFYAYPLALILVGFLLLVV 189

Query: 157 MIG 159
           M+ 
Sbjct: 190 MVA 192


>gi|254033624|ref|YP_003029829.1| NADH dehydrogenase subunit 6 [Dunaliella salina]
 gi|246880710|gb|ACS95023.1| NADH dehydrogenase subunit 6 [Dunaliella salina]
          Length = 157

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +  Y F  +    S LV   +N   S+   I  ++N+  + L LG EF+A+I ++VYVGA
Sbjct: 2   ILEYSFIALLAFLSILVSQTKNVFMSLMYSILLYINSFVVLLSLGFEFLAIINVLVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + V FLF+IM+L+I          RG+     +G L+  L    ++  +F+        +
Sbjct: 62  LAVLFLFVIMLLEIP-STELRAYYRGYSVLAMLGFLSVRLFSVNNSHTIFT-------FI 113

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
               ++ N+G   Y  YA  L ++  IL +++ GA+VL  
Sbjct: 114 PTLESISNVGYAFYIVYADVLVLNSLILTIALFGALVLAH 153


>gi|29126612|ref|NP_803515.1| NADH dehydrogenase subunit 6 [Monoblepharella sp. JEL15]
 gi|29029510|gb|AAO64960.1| NADH dehydrogenase subunit 6 [Monoblepharella sp. JEL15]
          Length = 193

 Score = 64.7 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 26/175 (14%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           F  +  +   LV+  R+PI SV  L   ++   G+FLLL   F+ +  ++VYVGA+ + F
Sbjct: 10  FLVLIGLCGVLVIVSRSPINSVLFLCGLYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILF 69

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE------------ 118
           LF I M+++ + +              +   A   I  A                     
Sbjct: 70  LFTIFMINVRLTLQLGSFASPVAAILLLTGFAIYFIFFADLSFSQDLPLLSSIFSSTDAS 129

Query: 119 --------------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
                          + S L+ + +++  +  +++  Y   L + GF+LL+ M+ 
Sbjct: 130 SLSSWESDLRSVYASDWSHLLGRPSDLTMLANMIFHAYPLALILVGFLLLVVMVA 184


>gi|312183561|gb|ADQ42350.1| NADH:ubiquinone oxidoreductase J [Methanosaeta harundinacea]
          Length = 99

 Score = 64.7 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          ++   F L + + +  S L V  RN ++S   L+ +F   A L++ L A FV +  ++VY
Sbjct: 14 IELGAFSLLAVIILGLSILTVYSRNIVHSGLYLLGSFAAVAALYIFLNATFVGVAQVLVY 73

Query: 63 VGAVIVFFLFIIMMLDIDIEVAE 85
          +GAV V  LF IM+    +   E
Sbjct: 74 IGAVGVLILFAIMLTKKTLMEEE 96


>gi|60117148|ref|YP_209611.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum]
 gi|51339712|gb|AAU00626.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum]
          Length = 302

 Score = 64.7 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 49/83 (59%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPIYSV +LI  F   A + ++L  EF+A I ++V VGAV V FLFIIMM++I+I   + 
Sbjct: 25  NPIYSVLNLIIIFWCYACILIILDMEFLACIFILVNVGAVAVLFLFIIMMININIVEIKD 84

Query: 87  RKKRGFLGSFFIGILAAELIVCA 109
             K+ +    F+ +    LI   
Sbjct: 85  NLKKYYPFLIFLTLNVIGLISLI 107



 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM--- 164
           A N + F     +     +  ++++IG  +LY   +    ++  ILL++M+G I +    
Sbjct: 202 AINSIEFVQYENIYEKFIQTTDIKHIGSNLLYASNSIWFILACLILLVAMVGVIYITEEL 261

Query: 165 --LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
              R     K QD+ +Q+  +   +I    VKS K
Sbjct: 262 LIKRKLEGNKSQDLFEQISKDYIGNIKFYDVKSTK 296


>gi|91975814|ref|YP_568473.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisB5]
 gi|91682270|gb|ABE38572.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisB5]
          Length = 168

 Score = 64.3 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 72/140 (51%), Gaps = 4/140 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L        A++S+ + VT  N ++++  L+   +  A  F  LGA F A++ +++Y
Sbjct: 1   MSLLLAIYAGAFALVSAAIAVTRPNAVHALLYLVVTLLALAVAFFALGAAFAAVLLIMIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F++M L I  E +  R++    G++ + +L + LI+      VF   G  +
Sbjct: 61  AGAIVVLFVFVVMTLPISPE-SMTRERASLRGAWPVPLLLSVLIIAP---FVFGEFGIAA 116

Query: 123 RLVFKGNNVENIGKVLYTQY 142
                  + + +G++L+  +
Sbjct: 117 NTAAAPVSAQQVGRLLFGPW 136


>gi|218509387|ref|ZP_03507265.1| hypothetical protein RetlB5_18674 [Rhizobium etli Brasil 5]
          Length = 118

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 42/50 (84%)

Query: 31  SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           SV  LI  F NAAGLFLLLGAEF+AMI LVVYVGAV V FLF++MMLDID
Sbjct: 57  SVLFLILVFFNAAGLFLLLGAEFLAMILLVVYVGAVAVLFLFVVMMLDID 106


>gi|15147287|ref|NP_150360.1| NADH dehydrogenase subunit 6 [Rhizophydium sp. 136]
 gi|15100129|gb|AAK84290.1|AF404306_32 NADH dehydrogenase subunit 6 [Rhizophydium sp. 136]
          Length = 269

 Score = 63.5 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 47/72 (65%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          L   + I+SSFL++T  NP+  +  LI  F+ +A ++LLL   F+ +  ++VYVGA+ + 
Sbjct: 9  LICTIGILSSFLILTSLNPVTRLVLLIIVFIMSAFIYLLLDFYFLGLTYIIVYVGAIAIL 68

Query: 70 FLFIIMMLDIDI 81
          FLF+IMM ++  
Sbjct: 69 FLFVIMMSEVKE 80


>gi|309773934|ref|NP_075423.2| ND6 protein [Yarrowia lipolytica]
 gi|54036245|sp|Q9B6E9|NU6M_YARLI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|12718792|emb|CAC28088.2| ND6 protein [Yarrowia lipolytica]
          Length = 185

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 15/184 (8%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +   F  +  F+AI+ +  +++ +NP+ S+  +I  FV AA    L+G    +++ ++
Sbjct: 2   MYLTYYFIEITIFLAILCTIFIISAKNPMVSILYMIALFVIAAMYLYLIGLGIFSLLYIM 61

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +Y+GA+ V FLFII +LDI+      +     L    I ++   +              +
Sbjct: 62  IYIGAIAVLFLFIITLLDINSTELSVKSNIRDLPLVLISLIVLTISGLMIYSNDSILINK 121

Query: 121 LSRLVFKGNNV---------------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
           L        N                  IG VL T  A+ L +   +LLL +IG I + +
Sbjct: 122 LLEAFGNDYNTIITQDWFNIENTTLLTTIGNVLLTNNAFILLVLAIVLLLGIIGPISITM 181

Query: 166 RHRR 169
           +H+ 
Sbjct: 182 KHKE 185


>gi|169235559|ref|YP_001688759.1| NADH dehydrogenase subunit J [Halobacterium salinarum R1]
 gi|167726625|emb|CAP13410.1| NADH dehydrogenase-like complex subunit J1 [Halobacterium
          salinarum R1]
          Length = 90

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 44/77 (57%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M  ++L F LF+ + + SS  VV VR+  +S   L  A ++    +++L A F+  + ++
Sbjct: 5  MPYETLAFALFAALTVASSLGVVLVRDVWHSALLLGIALLSIGVHYVMLQAPFLMAMQIL 64

Query: 61 VYVGAVIVFFLFIIMML 77
          VYVG V++   F +M+ 
Sbjct: 65 VYVGGVLILITFAVMLT 81


>gi|222479144|ref|YP_002565381.1| NADH dehydrogenase subunit J [Halorubrum lacusprofundi ATCC
          49239]
 gi|222452046|gb|ACM56311.1| NADH dehydrogenase subunit J [Halorubrum lacusprofundi ATCC
          49239]
          Length = 88

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          MV  ++ F LF+ + +     VV  R+  ++   L  A  + A  +++L AEF+A + ++
Sbjct: 1  MVYATIAFGLFAAVTLAFGLGVVLARDVFHAALLLGGALTSVAVHYVMLQAEFIAAMQIL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVA 84
          VYVG V++   F +M+   D E  
Sbjct: 61 VYVGGVLILVTFAVMLTRSDTETE 84


>gi|115523736|ref|YP_780647.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisA53]
 gi|115517683|gb|ABJ05667.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisA53]
          Length = 166

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 11/140 (7%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI- 81
           VT  N ++S+  L+ A +  A  F  LGA F   + ++VY GA++V F+F+ M +  D  
Sbjct: 21  VTRSNVMHSLLYLLAALLALAAAFFALGAGFAGALLIIVYAGAIVVLFVFVAMTVGTDDA 80

Query: 82  --EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139
             E    + +R +     I IL A   +      + S    +S         + +G++L+
Sbjct: 81  AMERERDQLERSWPMPAAISILVAAPFLFGIGDPIPSHATPVS--------AQAVGRLLF 132

Query: 140 TQYAYPLEISGFILLLSMIG 159
             +A+ +E++ F+LL  +IG
Sbjct: 133 GPWAWAIELASFLLLAGLIG 152


>gi|29126634|ref|NP_803496.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL105]
 gi|29029490|gb|AAO64941.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL105]
          Length = 203

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 36/185 (19%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           F  +  +S  LV+  R+PI SV  L   ++   G+FLLL   F+ +  ++VYVGA+ + F
Sbjct: 10  FLVLIGLSGVLVIVSRSPINSVLFLCGLYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILF 69

Query: 71  LFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRL 124
           LF I M+++   +++                 L   L    S++    ++ S  G    L
Sbjct: 70  LFTIFMINVRLTLQLGSFASPLAAFALLIGFGLYFLLFADFSSYKDLPILSSILGSSHSL 129

Query: 125 VFKGNNVE------------------------------NIGKVLYTQYAYPLEISGFILL 154
              G N +                               +  +++  Y   L + GF+LL
Sbjct: 130 PVDGINSQILPDGAWENSLRSLYASDWSHLLGRPSDLTMLANMIFYAYPLALILVGFLLL 189

Query: 155 LSMIG 159
           + M+ 
Sbjct: 190 VVMVA 194


>gi|20090360|ref|NP_616435.1| NADH dehydrogenase subunit J [Methanosarcina acetivorans C2A]
 gi|19915365|gb|AAM04915.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina
          acetivorans C2A]
          Length = 96

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 45/79 (56%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          ++   F L +F+ +  +  VV  ++ + +  +LI      A L++LL A+F+ +I ++VY
Sbjct: 11 LEMAVFGLLAFVTVFFAIFVVIAKDVVRAGLALIMCMFGVAALYILLNAQFLGIIQVLVY 70

Query: 63 VGAVIVFFLFIIMMLDIDI 81
          +GA+ V  LF +M+    +
Sbjct: 71 IGAIGVLILFAVMLTKRHL 89


>gi|12895|emb|CAA31402.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii]
          Length = 137

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 31  SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90
           S+   +  F+N++ + ++LG EF+A++ L+VYVGA+ V FLF+IM+L+I         + 
Sbjct: 2   SLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIPATELRAYSRG 61

Query: 91  GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISG 150
                 F+ I+     +  S          +   +    ++ N+G  LY  +A  L ++ 
Sbjct: 62  WSTLGIFVFIINGVFQITPSM-----GPRGIITGLPGAESITNLGHALYLYFADLLILNS 116

Query: 151 FILLLSMIGAIVLM 164
            +L +++ G   + 
Sbjct: 117 LVLTVALFGCAAIA 130


>gi|294496243|ref|YP_003542736.1| hypothetical protein Mmah_1595 [Methanohalophilus mahii DSM 5219]
 gi|292667242|gb|ADE37091.1| hypothetical protein Mmah_1595 [Methanohalophilus mahii DSM 5219]
          Length = 90

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 46/74 (62%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          ++L F++ + + I  S   V  ++ + +  +L+F+    AGLF+ L A+F+ ++ ++VYV
Sbjct: 6  EALVFFILAAVVIFFSLAAVLSKDIVRAALALVFSMFTVAGLFITLNAQFLGVVQILVYV 65

Query: 64 GAVIVFFLFIIMML 77
          GA+ V  LF +M+ 
Sbjct: 66 GAIGVLILFAVMLT 79


>gi|73658456|emb|CAI99038.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
          Length = 145

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 8/116 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIG 135
                        +    L +  S  +  S  G +              +N + IG
Sbjct: 90  FNLWTIGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIG 145


>gi|73658454|emb|CAI99036.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana]
          Length = 145

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 8/116 (6%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           NPI+S FSL F  V  + L++L  + FVA   L++YVGA+ V  +F +M ++ D E +  
Sbjct: 31  NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIG 135
                        +    L +  S  +  S  G +              +N + IG
Sbjct: 90  FNLWTIGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIG 145


>gi|298674251|ref|YP_003726001.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
          [Methanohalobium evestigatum Z-7303]
 gi|298287239|gb|ADI73205.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
          [Methanohalobium evestigatum Z-7303]
          Length = 105

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 46/74 (62%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F L S + I+ S L +  R+ + +  SLI +  + AGL++LL A+F+ ++ ++VYVGAV
Sbjct: 24 AFALLSLIIILFSLLTIVSRDVVRAAISLIVSLFSVAGLYILLNAQFLGVVQVLVYVGAV 83

Query: 67 IVFFLFIIMMLDID 80
           V  LF +M+   +
Sbjct: 84 GVLILFGVMLTKTE 97


>gi|108802981|ref|YP_642918.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764224|gb|ABG03106.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rubrobacter
           xylanophilus DSM 9941]
          Length = 168

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 3/170 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M  Q+LF   F   A+    +V    + + S  +L+F+      +FL + AEF+ ++ ++
Sbjct: 1   MSAQALFTGFFGVAAVWFGVVVFRTSSMVRSALALLFSQAAIGAMFLAMQAEFLGVLQVM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +    + +  +F++M +     + E         S   G LAA      +    +   G 
Sbjct: 61  MMATEMSIMAIFMVMYMMDPGGLGEMEMTHQKRASIAAGALAALAAAGVAALTDW---GP 117

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +         E +G  +  +     E +G  +L +MI A  + +  RR 
Sbjct: 118 AAAAPPAAEQTERLGAEMLGRSMLIFETAGVTILTAMIAATAVAIERRRR 167


>gi|20090361|ref|NP_616436.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina acetivorans
           C2A]
 gi|19915366|gb|AAM04916.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina acetivorans
           C2A]
          Length = 86

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%)

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152
             +  + +L   +IV       +    EL       +N++ IG +++TQY  P E+   +
Sbjct: 9   PLALLVSLLFVAVIVTGVFGTSWHTVSELPENPADPSNIQGIGMLIFTQYVVPFEVLSIV 68

Query: 153 LLLSMIGAIVLMLRHRRD 170
           LL S+IGAI +       
Sbjct: 69  LLASLIGAIYMAKGEGNR 86


>gi|257051783|ref|YP_003129616.1| NADH dehydrogenase subunit J [Halorhabdus utahensis DSM 12940]
 gi|256690546|gb|ACV10883.1| NADH dehydrogenase subunit J [Halorhabdus utahensis DSM 12940]
          Length = 90

 Score = 62.4 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 47/85 (55%)

Query: 2  VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
          V++ + F LF+   + +S  VV VR+  ++   L  A ++ A  +++  A FVA + ++V
Sbjct: 3  VLELIAFGLFALTTVGASLGVVLVRDVWHAALMLGIALLSVAVFYVMNQAPFVAAMQVLV 62

Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEP 86
          YVG V++   F +M+   +   ++ 
Sbjct: 63 YVGGVLILISFAVMLTRRNDPDSDG 87


>gi|257387969|ref|YP_003177742.1| NADH dehydrogenase subunit J [Halomicrobium mukohataei DSM 12286]
 gi|257170276|gb|ACV48035.1| NADH dehydrogenase subunit J [Halomicrobium mukohataei DSM 12286]
          Length = 90

 Score = 62.4 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          +++ F LF+ + I SS+ VV VR+  +S   L  A ++ A  +L+L AEFVA + ++VYV
Sbjct: 6  ETIAFVLFAVVTIASSWGVVLVRDVWHSALLLGVALLSVAVHYLMLRAEFVAAMQILVYV 65

Query: 64 GAVIVFFLFIIMMLDIDIEVAE 85
          G V++   F +M+   D  V E
Sbjct: 66 GGVLILITFAVMLTRKDESVVE 87


>gi|15789838|ref|NP_279662.1| NADH dehydrogenase subunit J [Halobacterium sp. NRC-1]
 gi|10580232|gb|AAG19142.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 86

 Score = 62.0 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 44/77 (57%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M  ++L F LF+ + + SS  VV VR+  +S   L  A ++    +++L A F+  + ++
Sbjct: 1  MPYETLAFALFAALTVASSLGVVLVRDVWHSALLLGIALLSIGVHYVMLQAPFLMAMQIL 60

Query: 61 VYVGAVIVFFLFIIMML 77
          VYVG V++   F +M+ 
Sbjct: 61 VYVGGVLILITFAVMLT 77


>gi|301353200|ref|YP_003795198.1| Nad6p [Candida subhashii]
 gi|262410217|gb|ACY66210.1| Nad6p [Candida subhashii]
          Length = 149

 Score = 61.6 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 7/150 (4%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           I+S +++   +PI+S+ S++  F+ AA    L G   + ++ +++YVGA+ + FLFI+ +
Sbjct: 7   IASLMILADLSPIHSILSMLVLFITAALSLYLAGYHLMGILYVLIYVGAIAILFLFIVSL 66

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
           L I       +     + +    ++  +L +     +  +       L         +G 
Sbjct: 67  LKIKHLANTVKTSPLVVVALATVLIPFDLTLGERRVVEEAPSLAYQELSH-------VGT 119

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            LY   A  L ++G IL+LS+IGAI +  R
Sbjct: 120 YLYCDSAIMLVVTGVILILSIIGAIAVTRR 149


>gi|73670843|ref|YP_306858.1| F420H2 dehydrogenase subunit [Methanosarcina barkeri str. Fusaro]
 gi|72398005|gb|AAZ72278.1| F420H2 dehydrogenase subunit [Methanosarcina barkeri str. Fusaro]
          Length = 83

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%)

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152
             +F + +L   ++V  +    ++   EL +     +N+E IG +++TQY  P E+   +
Sbjct: 6   PLAFLVVLLFTAIVVIGAFGTSWNTVSELPQSPADQSNIEGIGMLIFTQYVAPFEVLSIV 65

Query: 153 LLLSMIGAIVLMLRHRRD 170
           LL S+IGAI L       
Sbjct: 66  LLASLIGAIYLAKGEGNR 83


>gi|300711695|ref|YP_003737509.1| NADH dehydrogenase subunit J [Halalkalicoccus jeotgali B3]
 gi|299125378|gb|ADJ15717.1| NADH dehydrogenase subunit J [Halalkalicoccus jeotgali B3]
          Length = 102

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 47/78 (60%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          MV+++  F LF+ + + SS  VV VR+  ++   L  A ++ A  ++ L AEF+A + ++
Sbjct: 1  MVLETAAFVLFAGVTLASSLGVVLVRDVWHAALLLGVALLSVAIHYVTLTAEFLAAVQIL 60

Query: 61 VYVGAVIVFFLFIIMMLD 78
          VYVG V++   F +M+  
Sbjct: 61 VYVGGVLILITFAVMLTH 78


>gi|268627916|gb|ACZ13382.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D1a]
 gi|268627918|gb|ACZ13384.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D2d]
 gi|268627919|gb|ACZ13385.1| NADH dehydrogenase subunit 6 [Lepidisis sp. D2e]
          Length = 74

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 53/71 (74%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4  LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVYVGAI 63

Query: 67 IVFFLFIIMML 77
           + FLF+IM++
Sbjct: 64 AILFLFVIMLI 74


>gi|268627920|gb|ACZ13386.1| NADH dehydrogenase subunit 6 [Lepidisis sp. C1a]
          Length = 71

 Score = 60.8 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 50/68 (73%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4  LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63

Query: 67 IVFFLFII 74
           + FLF+I
Sbjct: 64 AILFLFVI 71


>gi|90425538|ref|YP_533908.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisB18]
 gi|90107552|gb|ABD89589.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris BisB18]
          Length = 155

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 11/149 (7%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           MA+I++ L VT  N ++++  L+   +  A  F  L A F A++ ++VY GA+IV F+F+
Sbjct: 1   MALIAAALAVTRYNVVHALLYLLAMLLALAASFFALRAAFAAVLLIMVYAGAIIVLFVFV 60

Query: 74  IMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           +M +    E     +   +R +     I +L A   +             ++        
Sbjct: 61  VMAVGTSPEAIARERAMLRRSWPMPAAISVLVAAPFLFGIGEQAPGNTAPIA-------- 112

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIG 159
            + +G++L+  +A+ +E++ F+LL  +IG
Sbjct: 113 AQAVGRLLFGPWAWAIELASFLLLAGLIG 141


>gi|268627914|gb|ACZ13380.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1b]
 gi|268627915|gb|ACZ13381.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1a]
 gi|268627917|gb|ACZ13383.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D1a]
          Length = 71

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 50/68 (73%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4  LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVYVGAI 63

Query: 67 IVFFLFII 74
           + FLF+I
Sbjct: 64 AILFLFVI 71


>gi|242090093|ref|XP_002440879.1| hypothetical protein SORBIDRAFT_09g012611 [Sorghum bicolor]
 gi|241946164|gb|EES19309.1| hypothetical protein SORBIDRAFT_09g012611 [Sorghum bicolor]
          Length = 67

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             + S  A++S  +VV  +NP++SV   I  F + +GL +LLG +F  MI  VV++GA+
Sbjct: 1  ILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFYDTSGLLILLGLDFSTMIFPVVHIGAI 60

Query: 67 IVFFL 71
           V FL
Sbjct: 61 AVSFL 65


>gi|225257|prf||1211235CR ORF 99B
          Length = 99

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKV 137
           D  +             S FI ++           +  +   ++    F  +N + IG  
Sbjct: 12  DFHLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDF-ISNSQQIGIH 70

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166
           L T +  P E+   ILL+++IGAI +  +
Sbjct: 71  LSTDFFLPFELISIILLVALIGAIAVARQ 99


>gi|289809208|ref|ZP_06539837.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 69

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 39/64 (60%)

Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
             NP++++  L+ + +  +G+F  LGA F   + ++VY GA++V F+F++MML++    
Sbjct: 6  LSTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSE 65

Query: 84 AEPR 87
           E  
Sbjct: 66 IEQE 69


>gi|294496242|ref|YP_003542735.1| hypothetical protein Mmah_1594 [Methanohalophilus mahii DSM 5219]
 gi|292667241|gb|ADE37090.1| hypothetical protein Mmah_1594 [Methanohalophilus mahii DSM 5219]
          Length = 117

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
           F+I +  ++I   E    R  L +  +G+  A ++V       ++   +L + +   +N+
Sbjct: 21  FLIRLAHMEIPPLE-VIGRAILRASIVGLFLAVVLVSLYG-TSWTTVDQLPQNMEDQSNI 78

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
           + IG +++T +  P E+   +LL S++GAI +  
Sbjct: 79  KAIGTLIFTDFVVPFEVLSIVLLSSLMGAIYMAK 112


>gi|86748480|ref|YP_484976.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris HaA2]
 gi|86571508|gb|ABD06065.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Rhodopseudomonas palustris HaA2]
          Length = 168

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 4/140 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M           A++S+ + VT  N ++++  L+   +  A  F  LGA F A++ +++Y
Sbjct: 1   MSLWLAIYAGGFALVSAAIAVTRPNAVHALLYLVVMLLALAVAFFALGAAFAAVLLILIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            GA++V F+F++M L I  E    R++ G  G++ + +L + LI+    F  F   G  +
Sbjct: 61  AGAIVVLFVFVVMTLPISPESI-TRERAGLRGAWPLPLLLSVLILAPFLFGEFGIAGNTA 119

Query: 123 RLVFKGNNVENIGKVLYTQY 142
                    + +G++L+  +
Sbjct: 120 AAPVSA---QQVGRLLFGPW 136


>gi|268627910|gb|ACZ13377.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1b]
 gi|268627913|gb|ACZ13379.1| NADH dehydrogenase subunit 6 [Keratoisis sp. B1c]
          Length = 70

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 49/67 (73%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4  LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVYVGAI 63

Query: 67 IVFFLFI 73
           + FLF+
Sbjct: 64 AILFLFV 70


>gi|126640818|ref|YP_001083802.1| NADH dehydrogenase I chain J [Acinetobacter baumannii ATCC 17978]
          Length = 130

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 47  LLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           +++GA F   + ++VY GA++V F+F++MML++     E  +K     ++    L + L+
Sbjct: 1   MIVGAPFAGALEIIVYAGAIMVLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLL 60

Query: 107 VCASNFMVFSAEGELS-RLVFKGNNVENIGKVLYTQYAYPLE 147
                +M+      +S  L  +    + +G+ L+T Y   +E
Sbjct: 61  GLLLVWMLGGEYTTISAPLGAQVIGPKVVGQALFTHYLLLVE 102


>gi|329889073|ref|ZP_08267416.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328844374|gb|EGF93938.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 171

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 65/160 (40%), Gaps = 2/160 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q +F   F   A+    +V    + + S  +L+F+      +FL++ AEF+ ++ ++
Sbjct: 1   MTVQMIFLAFFGAAAVWFGVVVFRTHSMVRSALALLFSQTAIGAMFLVMQAEFLGVLQIM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +    + V  +F++M +     + +         S + G +     +       +     
Sbjct: 61  MMATEMSVMAIFMVMFMMDPGGMGKMDMTHQKRLSLWAGGIGLLAALLLVWLPDWGPVAL 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
                 +     ++G+ L  +  +  + +G  +L +MI A
Sbjct: 121 SVPGAHEQ--AADLGRELLGRSMFIFQSAGLTILTAMIAA 158


>gi|224474105|gb|ACN49296.1| Nad6p [Candida orthopsilosis]
          Length = 155

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 71/149 (47%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           ISS L + + +P+ S+  LI  FV+AA      G   + ++ +++YVGA+ + FLFI+ +
Sbjct: 7   ISSILAIGLLSPVQSIVCLIALFVSAAISLYSNGFVLMGILYVLIYVGAIAILFLFILSL 66

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
           L+I+           F       I               +     + L+     +  +G 
Sbjct: 67  LNIEYNYKGTIHPLIFTILLICLIPLDLSYETYGIVENVNIAYPFNGLLDWDLELSTVGT 126

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165
           +LYT+YA P+   G IL+LS+IGAI +  
Sbjct: 127 LLYTEYAIPMIFIGLILILSVIGAIAITK 155


>gi|268627909|gb|ACZ13376.1| NADH dehydrogenase subunit 6 [Isidella sp. I3b]
          Length = 70

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 50/67 (74%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +FS   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4  LFMIFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63

Query: 67 IVFFLFI 73
           + FLF+
Sbjct: 64 AILFLFV 70


>gi|168700376|ref|ZP_02732653.1| hypothetical protein GobsU_12670 [Gemmata obscuriglobus UQM 2246]
          Length = 410

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 56/119 (47%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           V+ +  F+LFS  A++   ++V  +NP     +  F  ++  GLFLLL A F+   T+++
Sbjct: 68  VIGTALFWLFSAGALVFGTVLVVQKNPARGAIAFAFVILSVCGLFLLLAAPFLMAATVII 127

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           Y GA+IV FLF++M+          R +    GSF        ++            GE
Sbjct: 128 YAGAIIVTFLFVLMLSQAGTSNENDRTREPLYGSFAGFAFVGLVLFTLYQTSQRPKPGE 186



 Score = 54.6 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 28/42 (66%)

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
               NV N+G VLY+Q+   +E++G +LL+++IGA+ +  R 
Sbjct: 365 LPAGNVRNLGFVLYSQHLLAVELAGTLLLVAVIGAVAITHRK 406


>gi|21228586|ref|NP_634508.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
 gi|20907080|gb|AAM32180.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
          Length = 83

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%)

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152
             +F + +L   ++V  +    ++   EL       +N+E IG +++T +  P E+   +
Sbjct: 6   PLAFLVCLLFVAVVVTGAFGTSWNTVSELPENPADPSNIEGIGMLIFTHFVAPFEVLSIV 65

Query: 153 LLLSMIGAIVLMLRHRRD 170
           LL S+IGAI +       
Sbjct: 66  LLASLIGAIYMAKGEGNR 83


>gi|55378234|ref|YP_136084.1| NADH dehydrogenase subunit J [Haloarcula marismortui ATCC 43049]
 gi|55230959|gb|AAV46378.1| NAD(P)H-quinone oxidoreductase chain 6 [Haloarcula marismortui
          ATCC 43049]
          Length = 89

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 47/82 (57%)

Query: 4  QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          +S+ F LF+ + + S+  VV VR+  +S   L  + ++ A  +++  A FVA + ++VYV
Sbjct: 5  ESIAFALFAIVTVGSAAGVVLVRDVWHSALLLGVSLISVAVFYVMNQAAFVATMQILVYV 64

Query: 64 GAVIVFFLFIIMMLDIDIEVAE 85
          G V++   F +M+   D  V E
Sbjct: 65 GGVLILITFAVMLTREDESVIE 86


>gi|67968339|dbj|BAE00239.1| NADH dehydrogenase subunit 6 [Selaginella uncinata]
          Length = 179

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 15/161 (9%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           +  S  V +  N ++            +     L A+F A+  + ++ GAV V  LF  M
Sbjct: 20  VPGSLGVASPANIVHPALPPGSVSACTSLPHPSLNADFAAVAQIPIHAGAVNVPILFAAM 79

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE---LSRLVF------ 126
                  V++P+       +   G+ +A     +   +    +     +S +V       
Sbjct: 80  ------PVSKPKFPHPAPWTVGDGMTSAPRTSASPPPIDVIPDTSRYGMSPIVLRDAGGS 133

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167
              +V  IG    T+   P E    +LL++ +GAI++  R 
Sbjct: 134 PAYSVRRIGYDSPTESLLPSEPPPIVLLVAPVGAIIVARRE 174


>gi|301353474|ref|YP_003795695.1| NADH dehydrogenase subunit 6 [Phakopsora meibomiae]
 gi|253807598|gb|ACT36177.1| NADH dehydrogenase subunit 6 [Phakopsora meibomiae]
          Length = 194

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 28/178 (15%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
            +V+T  +P+ SV  LI  F+  A   +     +++++ ++VYVGA+IV  LF+I+++++
Sbjct: 14  LIVITSTSPVTSVVYLITVFLLVAVYLVFNNIVYISLVLVIVYVGAIIVLILFVIIIINL 73

Query: 80  DIEVAEPRKKRGFLGSFFIGIL-------------AAELIVCASNFMVFSAEGELSRLVF 126
                         G+  I I+                +    +  +  +A    + +V 
Sbjct: 74  QDLRTTQNIAWSRWGASIIFIVIIINMDMAHWNADILPMFQYITISISKNAWSSNNWIVE 133

Query: 127 KGNN---------------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              N               ++++G  LYT     + I+ F+ +LSM+G IV+     R
Sbjct: 134 NTTNMVFNSSDMNLFDLSQIQSLGLSLYTHSFIYIIIASFVFILSMVGPIVITSNKSR 191


>gi|301353313|ref|YP_003795385.1| NAD6 [Phakopsora pachyrhizi]
 gi|251765326|gb|ACT15479.1| NAD6 [Phakopsora pachyrhizi]
          Length = 189

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 25/176 (14%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
            +V+T  +P+ SV  LI  F+  A   +     +++++ ++VYVGA+IV  LF+I+++++
Sbjct: 14  LIVITSTSPVTSVVYLITVFLLVAIYLVFNNIVYISLVLVIVYVGAIIVLILFVIIIINL 73

Query: 80  -DIEVAEPRKKRGFLGSFF----------------IGILAAELIVCASNFMVFSAEGELS 122
            D+   +      ++ S                  I  +   + +  S     S     +
Sbjct: 74  QDLRTTQNIAWSRWVASIIFIVIIINTDMAHWNADILSMFQYITISISKNAWSSNNWITT 133

Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170
            +VF          ++++++G  LYT     + ++ F+ +LSM+G IV+     R 
Sbjct: 134 NMVFNPSDMNLFDLSHIQSLGLSLYTHSFIYIILASFVFILSMVGPIVITSNKSRG 189


>gi|4588017|gb|AAD25954.1|AF087657_1 NADH-ubiquinone oxidoreductase chain 6 [Agrocybe aegerita]
          Length = 139

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 53/113 (46%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            + SS + +T  NPI S+  LI  FV AA   +L+G  F+ +  +V+YVGA+ V FLFII
Sbjct: 13  VLFSSVISITFSNPIISIIFLITTFVQAACYLILIGINFIGISYIVIYVGAIAVLFLFII 72

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           MM+ I +                   + +  I    + + ++      +L+  
Sbjct: 73  MMIHIKLTDILDTGNNYTKNLPLGLTIVSLFIFVLFSILPYTYNNISFQLLPN 125


>gi|268627908|gb|ACZ13375.1| NADH dehydrogenase subunit 6 [Isidella sp. I1a]
          Length = 70

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 50/67 (74%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +FS   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4  LFMIFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAL 63

Query: 67 IVFFLFI 73
           + FLF+
Sbjct: 64 AILFLFV 70


>gi|83956301|ref|ZP_00964742.1| hypothetical protein NAS141_01696 [Sulfitobacter sp. NAS-14.1]
 gi|83839522|gb|EAP78703.1| hypothetical protein NAS141_01696 [Sulfitobacter sp. NAS-14.1]
          Length = 171

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 64/160 (40%), Gaps = 2/160 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +Q +F   F   A+    +V    + + S  +L+F+      +FL++ AEF+ ++ ++
Sbjct: 1   MTVQMIFLAFFGAAAVWFGVVVFRTHSMVRSALALLFSQTAIGAMFLVMQAEFLGVLQIM 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           +    + V  +F++M +     + +         S + G +     +       +     
Sbjct: 61  MMATEMSVMAIFMVMFMMDPGGMGKMDMTHQKRLSLWAGGIGLLAALLLVWLPDWGPVAL 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
                 +     ++G+ L  +     + +G  +L +M+ A
Sbjct: 121 SVSGAHEQ--AADLGRELLGRSMLIFQSAGLTILTAMVAA 158


>gi|292655143|ref|YP_003535040.1| NADH dehydrogenase-like complex subunit J1 [Haloferax volcanii
          DS2]
 gi|291372449|gb|ADE04676.1| NADH dehydrogenase-like complex subunit J1 [Haloferax volcanii
          DS2]
          Length = 86

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 52/85 (61%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          MV +++ F LF+ + +  S  VV VR+  +S   L  A ++ A  +++L AEF+A + ++
Sbjct: 1  MVYETIAFALFALVTVGCSLGVVLVRDIWHSALLLGGALLSVAVHYVMLQAEFLAAMQVL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85
          VYVG V++   F +M+  I+ EV+ 
Sbjct: 61 VYVGGVLILITFAVMLTRINPEVSS 85


>gi|189502385|ref|YP_001958102.1| hypothetical protein Aasi_1025 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497826|gb|ACE06373.1| hypothetical protein Aasi_1025 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 173

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 58/139 (41%), Gaps = 1/139 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L +  F+ +  + S +++  +   +++  LI   +  + L+ L GA FV++I L+++ G
Sbjct: 4   NLLYVFFAVLVAVGSLVILFAKQEFFALLMLILIVIFLSTLYFLQGAPFVSIIQLILHAG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-FMVFSAEGELSR 123
            ++V  +  ++     I+       +       IG ++  L+    N     S    L  
Sbjct: 64  GILVLLICSLLFFKHAIKAPNNTDNKIIYKRIVIGAISIGLVGYLCNKLSTISYLFNLPA 123

Query: 124 LVFKGNNVENIGKVLYTQY 142
                  ++ +G  +   Y
Sbjct: 124 SNRPVGTIQQLGYQILGPY 142


>gi|256593092|gb|ACV03501.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D3]
          Length = 67

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 46/64 (71%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4  LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63

Query: 67 IVFF 70
           + F
Sbjct: 64 AILF 67


>gi|255019947|ref|ZP_05292021.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970606|gb|EET28094.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus
           ATCC 51756]
          Length = 166

 Score = 57.7 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 28  PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87
           P+          +  A LFLLLGA FVA + +++Y+GA++V FLF IM+L  D E  E  
Sbjct: 25  PMRGAVLFGAVLLLLAVLFLLLGAPFVAALEVILYLGAILVLFLFAIMLLRPDPE-EETG 83

Query: 88  KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLE 147
            +R   G+    +L   L +      +      LS        +  IG  L+  + + +E
Sbjct: 84  ARRFRRGAGPALLLLCALALVLGLLFLPQTGPHLSAHPLG---IAEIGAALFGPWLWLVE 140

Query: 148 ISGFILLLSMIGAIVLMLRHRRD 170
                LL ++IGA VL +    D
Sbjct: 141 ALAV-LLFAVIGA-VLAIHQGGD 161


>gi|313126881|ref|YP_004037151.1| NADH dehydrogenase subunit j [Halogeometricum borinquense DSM
          11551]
 gi|312293246|gb|ADQ67706.1| NADH dehydrogenase subunit J [Halogeometricum borinquense DSM
          11551]
          Length = 86

 Score = 57.7 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 50/85 (58%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          MV +++ F LF+ + +  S  VV VR+  +S   L  A ++ A  +++L AEF+A + ++
Sbjct: 1  MVYETIAFALFALITVGCSLGVVLVRDIWHSALLLGGALLSVAVHYVMLQAEFLAAMQIL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85
          VYVG V++   F +M+    +E + 
Sbjct: 61 VYVGGVLILVTFAVMLTRTRLEASS 85


>gi|76801795|ref|YP_326803.1| NADH dehydrogenase subunit J [Natronomonas pharaonis DSM 2160]
 gi|76557660|emb|CAI49243.1| NADH dehydrogenase-like complex, subunit J1 [Natronomonas
          pharaonis DSM 2160]
          Length = 91

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%)

Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
          + +S  VV  R+  +S   L  A  + A  +++L AEF+A+I ++VYVG V++   F +M
Sbjct: 19 VGASLGVVLARDVWHSALFLGAALFSVAVHYVMLRAEFLAVIQVLVYVGGVLILITFAVM 78

Query: 76 MLDIDIEVAE 85
          ++  D    E
Sbjct: 79 LVRQDNTGGE 88


>gi|46202537|ref|ZP_00208557.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J)
          [Magnetospirillum magnetotacticum MS-1]
          Length = 57

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLF 46
            +L FY+F+ +A+ S  +V++ RNP++SV  LI AF NA   F
Sbjct: 2  FTALIFYMFAAIAVASGVMVISSRNPVHSVLWLILAFFNARACF 45


>gi|110667601|ref|YP_657412.1| NADH dehydrogenase subunit J [Haloquadratum walsbyi DSM 16790]
 gi|109625348|emb|CAJ51771.1| NADH dehydrogenase, subunit J (ubiquinone) [Haloquadratum walsbyi
          DSM 16790]
          Length = 86

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 50/85 (58%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          MV +++ F LF+ + +  S  VV +++  +S   L  A ++ A  +++L AEF+A++ ++
Sbjct: 1  MVYETIAFVLFALVTVGCSLGVVLMQDVWHSALLLGGALLSVAVHYVMLQAEFLAVMQIL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85
          VYVG V++   F +M+     E + 
Sbjct: 61 VYVGGVLILVTFAVMLTRTQPEGSN 85


>gi|21672445|ref|NP_660512.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008867|sp|Q8K9X9|NUOJ_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit J; AltName:
           Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1
           subunit J
 gi|21623058|gb|AAM67723.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 163

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
              FY  S +A+IS+ LV+  +N +YS+  LI + ++ +G+F + GA F   + +V+Y G
Sbjct: 2   EFVFYACSLIAVISTLLVIIQKNAVYSLLYLIISLLSISGIFFIFGAFFAGALEVVIYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A+IV F+F+IMML++  +     KK      +      + ++     + +F  + +  ++
Sbjct: 62  AIIVLFVFVIMMLNLGKKNDLQEKKYLNPIFWIGPSFLSLILFLLMTYAIFFVKDK--QI 119

Query: 125 VFKGNNVENIGKVLYTQY 142
            F   +V+ +G  L+  Y
Sbjct: 120 YFSLIDVKEVGINLFGPY 137


>gi|256593090|gb|ACV03500.1| NADH dehydrogenase subunit 6 [Keratoisis cf. flabellum SCF-2009]
          Length = 65

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 45/62 (72%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +FS   + +S +V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+
Sbjct: 4  LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVYVGAI 63

Query: 67 IV 68
           +
Sbjct: 64 AI 65


>gi|116515046|ref|YP_802675.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Cc (Cinara
          cedri)]
 gi|116256900|gb|ABJ90582.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Cc (Cinara
          cedri)]
          Length = 161

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 47/76 (61%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          ++ F+LFSF+A+  S L++   N IYS+  LI    + A +F +LG  F+ ++ +++Y G
Sbjct: 2  AISFWLFSFLAVFFSILIMISINLIYSLIYLILLIFSIASIFCVLGLSFIGVLEVIIYAG 61

Query: 65 AVIVFFLFIIMMLDID 80
          A+ V F+ I +++   
Sbjct: 62 AITVLFILIAILMRPK 77


>gi|255564026|ref|XP_002523012.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis]
 gi|223537752|gb|EEF39371.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis]
          Length = 112

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 91  GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISG 150
            +   FFI      +++              +  V    N+E +G +L         +  
Sbjct: 7   FWWKMFFILDNETIVLLPTQRNTASLRYTVYAGKVRSWTNLETLGNLL---------VPS 57

Query: 151 FILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNPDNSI 188
            ILL++MIGA+VL +       +K +D+S++   +   +I
Sbjct: 58  LILLVAMIGAVVLTMHKTTHRAVKTKDLSRRNAIDFRRTI 97


>gi|84494888|ref|ZP_00994007.1| hypothetical protein JNB_08819 [Janibacter sp. HTCC2649]
 gi|84384381|gb|EAQ00261.1| hypothetical protein JNB_08819 [Janibacter sp. HTCC2649]
          Length = 172

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 4/147 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    L F     +A+++  L VT R  +++   L+ A +  AG  L+LG E VA++ ++
Sbjct: 1   MTSLDLAFAACGLLAVVAGLLAVTTRQVVHAALWLVVALLGVAGSLLVLGHELVALVLVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAV+V  LF +M+    I          +         AA   +  +  +  +    
Sbjct: 61  VYVGAVVVLVLFALMLTRAPIGPDLAHDVPVWRRVAAGVAGAATTALLLAALLPLAGGAV 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147
             R +      + +   L+  + +P E
Sbjct: 121 ERREISN----QAVATELFGTWVWPFE 143


>gi|259019202|ref|YP_003204919.1| NADH dehydrogenase subunit 6 [Millerozyma farinosa]
 gi|257143763|emb|CAY39289.1| NADH dehydrogenase, subunit 6 [Millerozyma farinosa]
          Length = 146

 Score = 55.0 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           +SS L + +  P+ S+  LI  FV+ A      G   + ++ +++YVGA+ + FLFI+ +
Sbjct: 7   MSSLLALGMLTPVQSITCLIVTFVSTAMSTYSEGFILMGILYVLIYVGAIAILFLFILSL 66

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
           L+I+       K +G +    + IL   LI    ++  +    E + +  +      +G 
Sbjct: 67  LNIE------YKPQGSMKPIIVTILLVSLIPLDLSYETYGITTEFNTINEELW---VVGV 117

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165
             YT+YA  L ++G IL++S++GAI +  
Sbjct: 118 QFYTEYAILLLMTGLILMMSVMGAISITK 146


>gi|310915125|emb|CBM41834.1| NADH dehydrogenase subunit 6 [Millerozyma farinosa]
          Length = 153

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 2/149 (1%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           +SS L + +  P+ S+  LI  F + A      G   + M+ +++YVGA+ + FLF++ +
Sbjct: 7   LSSLLAMGMLTPVQSILCLIILFTSTAMCLYSQGFVLMGMLYMLMYVGAMAMLFLFMLSL 66

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
           L +D    +       L    + +    L +  S     ++ G +  +    N +  +G 
Sbjct: 67  LKMDAPSPKGYHHVSPLLLTLMIVTLMPLDLLYSGME--TSYGMMVEVENTYNELVVVGN 124

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165
            LYT+YA  L ++G +L+LS++GAI +  
Sbjct: 125 QLYTEYAMLLVMTGLMLMLSVMGAISMTK 153


>gi|169142682|ref|YP_001687109.1| NADH dehydrogenase subunit 6 [Polytomella capuana]
 gi|157429027|gb|ABV56561.1| NADH dehydrogenase subunit 6 [Polytomella capuana]
          Length = 144

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 15/158 (9%)

Query: 6   LFFYLFSFMAIIS-SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + FY     A+ + S  +V   +P  ++   I  +++   +  +LG EF+A++  +VYVG
Sbjct: 1   MLFYTALISALTALSLGIVLTTSPFMALMYSIVLYLDVQLILTMLGFEFMALVYALVYVG 60

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           A+ V FLF++M++ +               +     L+  + +  +  + FSA+      
Sbjct: 61  ALAVLFLFVVMLIRVQ--------------AAAFLSLSTNVSMWVAGIIGFSADTTPRSW 106

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
           +  G ++ N G +LYT YA    ++   L +++ G++V
Sbjct: 107 MIAGESLLNFGALLYTSYADLTILNSVALTVALFGSLV 144


>gi|48478478|ref|YP_024184.1| NADH dehydrogenase subunit J [Picrophilus torridus DSM 9790]
 gi|48431126|gb|AAT43991.1| NADH-quinone oxidoreductase chain J [Picrophilus torridus DSM
          9790]
          Length = 84

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 47/81 (58%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M    + F++F+ + +I SF+V++ +  I+S   L+   +  +GLF+ LG  FV  + L+
Sbjct: 1  MSYYYIVFFIFAILLVILSFMVISSKKLIHSSIYLLIFLIIISGLFISLGLSFVGSVELL 60

Query: 61 VYVGAVIVFFLFIIMMLDIDI 81
          VY GA++   +F +M+   + 
Sbjct: 61 VYAGAIVTLLVFTLMLTGGED 81


>gi|312233378|ref|YP_004021588.1| Nad6p [Candida jiufengensis]
 gi|268373365|gb|ACZ03937.1| Nad6p [Candida jiufengensis]
          Length = 163

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           I S   +++ +P+ S+ +L+  FV+ A      G   + M  +++YVGA+ + FLFI  +
Sbjct: 7   ICSTTALSLLSPVQSIVALMALFVSVAISLYSSGYITMGMTYILMYVGAIAILFLFITSL 66

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFSAEGELSRLVFKGNN 130
           L+I+        K+         +    L             +V +  G  S    +  +
Sbjct: 67  LNIEYSYKGTFNKKMVYVLLMCLMPLDLLYETFDTVENMNFDIVENMNGMYSTSSLQNWD 126

Query: 131 VE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
           +E   +G V YT+YA P  I   IL+LS++GAI +  
Sbjct: 127 LELSTVGTVFYTEYAMPTMIMSLILVLSVMGAIAMTK 163


>gi|271965156|ref|YP_003339352.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270508331|gb|ACZ86609.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 247

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 69/169 (40%), Gaps = 4/169 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +QS  F++ + +++     V  V +   + F+L+ + +    +FLL+   ++ ++ ++
Sbjct: 1   MTLQSAAFWMLATLSVAGGVAVFVVDSMARATFALLTSLICVGLVFLLIDLSYLGVLIVL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           + V  +++  +F+IM +     +   +      G+  I      L+V      VF     
Sbjct: 61  MMVMEMLIMAVFMIMFMMNPAGLMPMKMVHNARGAPLIAAGVFVLLVAG----VFLTPWP 116

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
             R     +    +G  +       + + G  +L +MI   VL     R
Sbjct: 117 RRRGSPPADPTHALGLSIMGPKMLVMMVVGVAILATMISTTVLATHRGR 165


>gi|322369191|ref|ZP_08043756.1| NADH dehydrogenase subunit J [Haladaptatus paucihalophilus DX253]
 gi|320550923|gb|EFW92572.1| NADH dehydrogenase subunit J [Haladaptatus paucihalophilus DX253]
          Length = 88

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 45/77 (58%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M  + + F LF+ + + SS   V VR+  +S   L  + ++ A  +++L AEFVA + ++
Sbjct: 1  MAYEMIAFALFAILTVASSVGAVLVRDVWHSALLLGASLLSFAAHYVMLQAEFVAAMQIL 60

Query: 61 VYVGAVIVFFLFIIMML 77
          VYVG V++   F +M+ 
Sbjct: 61 VYVGGVLILITFAVMLT 77


>gi|319790461|ref|YP_004152094.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio
           ammonificans HB-1]
 gi|317114963|gb|ADU97453.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio
           ammonificans HB-1]
          Length = 160

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 65/154 (42%), Gaps = 12/154 (7%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +++F++   + + S+ + +   + +++  S +      A ++  L    +  + L VY G
Sbjct: 4   NVYFWIVYAVIVFSAIIALEASSLLWAAVSFVVLLSEIALVYFGLNMPVLGGVQLAVYAG 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            V +  LF IMM+    +    +  +  + S           +     +VFS    +   
Sbjct: 64  GVTILVLFAIMMIGESYKKPPGKAVKAIVLSL----------ILLIIGIVFSFWSAIDTF 113

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMI 158
            FK  + E +G V   +Y++   + GFI  ++ I
Sbjct: 114 PFKVYSTEALGTVFVEKYSFFTIVLGFI--VAAI 145


>gi|262211481|gb|ACY35570.1| NADH dehydrogenase subunit 6 [Polytomella sp. SAG 63-10]
          Length = 145

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L  Y+     ++ +  VV   +P  ++   I  ++N   +   LG +F+A+I  +VYVGA
Sbjct: 2   LLIYIMLSNIVVLALSVVLTSSPFMALMYSILLYLNVQTILWSLGYDFMALIYALVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + V FLF++MM+ I +     +  +  L    I +              FS +       
Sbjct: 62  LAVLFLFVVMMVRIQVSTLSTKTVQAVLSWLAIMLF-------------FSYDNANYSFP 108

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162
               ++ N G  LY+  +    ++   L +++ G++V
Sbjct: 109 CAAESLLNFGTCLYSSCSDLTLLNSLALTIALFGSLV 145


>gi|256593063|gb|ACV03486.1| NADH dehydrogenase subunit 6 [Isidella sp. I2a]
 gi|256593066|gb|ACV03488.1| NADH dehydrogenase subunit 6 [Isidella tentaculum]
          Length = 61

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 43/58 (74%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           F +FS   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVG
Sbjct: 4  LFMIFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVG 61


>gi|167951306|ref|ZP_02538380.1| NADH dehydrogenase I chain J [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 44

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           +++I AI L +R R + K  D S+Q+     + + MV++ + K
Sbjct: 1   MAIIAAIRLTMRKRPENKSIDPSQQVVVKRADRVRMVQMDAEK 43


>gi|21689547|gb|AAL65277.1| NADH dehydrogenase subunit 6 [Polytomella parva]
          Length = 145

 Score = 52.3 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 49/97 (50%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L  Y+     ++ +  VV   +P  ++   I  ++N   +   LG +F+A+I  +VYVGA
Sbjct: 2   LLIYIMLSNIVVLALSVVLTSSPFMALMYSILLYLNVQTILWSLGYDFMALIYALVYVGA 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102
           + V FLF++MM+ I +     +  +  L    I ++ 
Sbjct: 62  LAVLFLFVVMMVRIQVSTLSTKTIQSVLSWLAIILIF 98


>gi|298674252|ref|YP_003726002.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Methanohalobium evestigatum Z-7303]
 gi|298287240|gb|ADI73206.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Methanohalobium evestigatum Z-7303]
          Length = 86

 Score = 52.3 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 104 ELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160
            +I  +     +    EL +     +N+E IG  ++T+Y  P EI   +LL ++IGA
Sbjct: 20  GMIGVSVIGTGWDTVEELPQTPEDQSNIERIGVSVFTKYVVPFEIMAIVLLSALIGA 76


>gi|189095565|ref|YP_001936271.1| NADH dehydrogenase subunit 6 [Aphrocallistes vastus]
 gi|150024083|gb|ABR58844.1| NADH dehydrogenase subunit 6 [Aphrocallistes vastus]
          Length = 188

 Score = 52.3 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 2/166 (1%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
            LV + R  I  V  LI  F+N + L +LL  EF+A+  ++VYVGA+ + F+FIIM+L++
Sbjct: 14  LLVTSSRRTINRVIWLILRFINTSLLLILLKLEFIAIFIIIVYVGAIAILFIFIIMILNL 73

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAEGELSRLVFKGNNVENIGKV 137
             +  +  +         I I     I  +     +  + E   ++ +    N+E I  +
Sbjct: 74  RNQKHKKSRNHLIPIRLIIRITLILHITEIIKKRKINNNQERISNKQIINLRNLEIIRNL 133

Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
           +Y+ Y   L I   ILLL M+ AI++  +      +Q +  Q++  
Sbjct: 134 IYSNYCEWLIIRRAILLLRMLTAILISEKENTQNIKQQLFTQIQRT 179


>gi|170289769|ref|YP_001736585.1| NADH dehydrogenase subunit J [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173849|gb|ACB06902.1| NADH dehydrogenase subunit J [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 160

 Score = 52.3 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F L S +A++SS L+V  R+ +YS F L    +  + LF LLG   +A+  LVVYVGA
Sbjct: 10  IIFLLSSALALVSSALIVFHRSIVYSAFFLSMLGIANSILFTLLGFPIIALFHLVVYVGA 69

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            + F LF ++M+  +    EP  +   + S  + IL    I  A
Sbjct: 70  AVTFILFSLVMM-REAPTVEPGIRALAVASIVLMILVLSSIFMA 112


>gi|329940453|ref|ZP_08289734.1| putative NADH dehydrogenase chain J [Streptomyces griseoaurantiacus
           M045]
 gi|329300514|gb|EGG44411.1| putative NADH dehydrogenase chain J [Streptomyces griseoaurantiacus
           M045]
          Length = 189

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 5/172 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
           A+    LV T+ +     F+L+ + V   G+  +LG  ++ ++ +++ V  +++  +F+I
Sbjct: 16  ALAGGVLVFTLNSMARVTFALLGSLVCVGGVVTVLGLPYLGVVIVLMMVMEMVIMAVFMI 75

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
             +     +          G+  +  L    +V      +F+        V   +    I
Sbjct: 76  AYMMNPAGLMPMSMLHNKRGALAVSSLVFAALVAG----IFAVPWPRRAGVRPDDTTLQI 131

Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVL-MLRHRRDIKRQDISKQLESNPD 185
           G  L       +   G +LL +M+GA VL   R R D    D+ ++   +P 
Sbjct: 132 GMSLMGGQMLTMVTLGIVLLATMVGATVLATHRGRYDRFGDDLDQRPAQDPA 183


>gi|11466053|ref|NP_038212.1| NADH dehydrogenase subunit 6 [Pichia canadensis]
 gi|22654266|sp|P48927|NU6M_PICCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|11036341|dbj|BAA06567.2| NADH dehydrogenase subunit 6 [Pichia canadensis]
          Length = 207

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 34/52 (65%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
          NP+YS+  LI  F+N A    L+G   ++++ ++VY+GA+ V FLFI+ +  
Sbjct: 36 NPMYSILYLIILFINIAIYLYLIGISIMSLLYILVYIGAIAVLFLFILSLFT 87


>gi|309322022|ref|YP_003935010.1| NADH dehydrogenase subunit 6 [Candida alai]
 gi|308746499|gb|ADO51034.1| NADH dehydrogenase subunit 6 [Candida alai]
          Length = 148

 Score = 51.2 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S ++ I+S L + + +PI S+  LI  F + A    + G   + ++ +++YVGA+ + FL
Sbjct: 2   SIISGIASLLAIGILSPIQSILCLIIIFTSTAIYLYINGFILMGILYILIYVGAIAILFL 61

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
           FI+ +L+I+         +   G+  + +    +I+   +        E        N +
Sbjct: 62  FIVSLLNIE-------YTKLIEGNVPLILSILIIILIPLDLTSNINIIENIDYNNIYNEL 114

Query: 132 ENIGKVLYTQYAY 144
             +G +LYT YA+
Sbjct: 115 NTVGSLLYTDYAF 127


>gi|269986912|gb|EEZ93188.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Parvarchaeum acidiphilum ARMAN-4]
          Length = 158

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 48/106 (45%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + S+ F + S + I ++ L+V+ +N I+S+  +    ++   + L L A F+ +  L+
Sbjct: 1   MDLGSIGFLVISALLISTAILMVSTKNLIHSLLYMFMFVISVTAMILYLNAVFLGIAELI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           +Y G +++     I  +          K    L    + + +  L+
Sbjct: 61  IYNGGIVLLLAIGISSMPEGTVTRLNSKLSFALPVIVLAVTSFLLL 106


>gi|256427272|ref|YP_003127037.1| Nad6p [Brettanomyces custersianus]
 gi|255761583|gb|ACU32820.1| Nad6p [Brettanomyces custersianus]
          Length = 168

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 1/139 (0%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           LI   +          ++  A++  ++YVGAV++ F+FI+ +L+   E          + 
Sbjct: 30  LIGTIIPVITELWFNSSQLFAILYTLIYVGAVVILFVFILSVLNKKEEYEYQYSSLLLIL 89

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRL-VFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                           N    +     + L +   +++  IG +L+T+Y++ L I    L
Sbjct: 90  IILFLDDLDYNDSGDYNLNNVNIFDNFNLLNITNNSDLATIGNLLFTEYSFLLVIIAVTL 149

Query: 154 LLSMIGAIVLMLRHRRDIK 172
           LLS+IG IV++ R++   K
Sbjct: 150 LLSIIGIIVIVKRNKSLAK 168


>gi|28972922|gb|AAM95261.1| NADH dehydrogenase subunit 6 [Plexaurella grisea]
          Length = 120

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S     + ++   
Sbjct: 1   LFLFVIMLIQQPNKVETQDHSHFLP-------VGLSVIFLFYSLLTNSPTYVSNPVIGSR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDISK 178
            N+  IG  LYT Y   + ++  +LL++MIGAI+L  +                +QD+ +
Sbjct: 54  TNIGAIGSHLYTTYYELVLVASLVLLVAMIGAILLAKQPNSPSLYNSYGDSLRSKQDLFQ 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|227828037|ref|YP_002829817.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus M.14.25]
 gi|227830774|ref|YP_002832554.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus L.S.2.15]
 gi|229579670|ref|YP_002838069.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus Y.G.57.14]
 gi|229581664|ref|YP_002840063.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus Y.N.15.51]
 gi|229585306|ref|YP_002843808.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus M.16.27]
 gi|238620267|ref|YP_002915093.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus M.16.4]
 gi|284998288|ref|YP_003420056.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sulfolobus
           islandicus L.D.8.5]
 gi|227457222|gb|ACP35909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus L.S.2.15]
 gi|227459833|gb|ACP38519.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus M.14.25]
 gi|228010385|gb|ACP46147.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus Y.G.57.14]
 gi|228012380|gb|ACP48141.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus Y.N.15.51]
 gi|228020356|gb|ACP55763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus M.16.27]
 gi|238381337|gb|ACR42425.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus M.16.4]
 gi|284446184|gb|ADB87686.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sulfolobus
           islandicus L.D.8.5]
 gi|323475128|gb|ADX85734.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus REY15A]
 gi|323477860|gb|ADX83098.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           islandicus HVE10/4]
          Length = 167

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 14/169 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAE----FVAMI 57
           ++Q   F  F  MAI  S  +V  +N  Y   SL F  ++ A L + L A       ++ 
Sbjct: 8   IIQYTLFAFFGTMAIAFSIYIVRAKNVFYGAVSLAFLGLSIAAL-IALEAPSTYGIYSVF 66

Query: 58  TLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            +++YVGA + F    ++M     +  E R +RG L     GILA   +       +F +
Sbjct: 67  HILLYVGATVTFLAISLVMF----KDLEVRIRRGSL-----GILAGGAVTLLFLITIFIS 117

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             ++S    +  N + +   L   Y +PL I    LL ++I AI L  R
Sbjct: 118 NFKVSPSTLQPINFQILANDLLENYWFPLIILIVALLTTLIEAIALARR 166


>gi|28972926|gb|AAM95263.1| NADH dehydrogenase subunit 6 [Plexaurella nutans]
          Length = 120

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            FLF+IM++    +V                 +   +I    + +  S     + ++   
Sbjct: 1   LFLFVIMLIQQPNKVETQDHSHFLP-------VGLSVIFLFYSLLTNSPTYVSNPVIGSR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDISK 178
            N+  IG  LYT Y   + ++  +LL++MIGAI+L  +                +QD+ +
Sbjct: 54  TNIGAIGSHLYTTYYELVLVASLVLLVAMIGAILLAKQPNSPSLYNSYGDSLRXKQDLFQ 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|134153039|gb|ABO64354.1| unknown [Brassica juncea var. tumida]
          Length = 256

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLF-----------LLLGAEFV 54
           +   + S  A++S  +V   +NP++SV   I  F +   +F             +   F+
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDIETVFTYFSSFPIIRKFSMKWRFL 60

Query: 55  AMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
                      ++V F+F +  L  D       +    +  F  G
Sbjct: 61  WFSIFKFIFAIIMVKFVFSVGYLCFDDLTRAISQFYPPISGFLGG 105


>gi|13449337|ref|NP_085519.1| hypothetical protein ArthMp052 [Arabidopsis thaliana]
 gi|15226112|ref|NP_178798.1| cytochrome b, putative [Arabidopsis thaliana]
 gi|44888127|sp|P93314|M590_ARATH RecName: Full=Uncharacterized mitochondrial cytochrome b-like
           protein AtMg00590; AltName: Full=ORF313
 gi|1785720|emb|CAA69743.1| unnamed protein product [Arabidopsis thaliana]
 gi|20198287|gb|AAM15503.1| hypothetical protein [Arabidopsis thaliana]
 gi|110740159|dbj|BAF01978.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251007|gb|AEC06101.1| Cytochrome b/b6 protein [Arabidopsis thaliana]
          Length = 313

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++   + S  A++S  +V   +N ++SV   I  F +   LF      +   + ++ ++ 
Sbjct: 44  TMILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQLF-----HYFCRLPIIKHLA 98

Query: 65  AVIVFFLFIIM 75
                 LF+I 
Sbjct: 99  TKCQLLLFLIS 109


>gi|325295369|ref|YP_004281883.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065817|gb|ADY73824.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 158

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 66/148 (44%), Gaps = 10/148 (6%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S++F++   + IIS+ + +   + +++  + +      A ++  +    +  + L +Y G
Sbjct: 2   SIYFWIIYAVIIISAIVALEATSLLWAAIAFVVLLSEIALVYFGIEMPVLGGVQLAIYAG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            V +  LF IMM+    +  + +       +    +L+  +++  +    FSA    S  
Sbjct: 62  GVTILVLFAIMMIGESYKKPQSK-------AVGAKVLSLIILILGTAVSFFSAIDTFSYR 114

Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFI 152
           ++     + +G V   +Y++   I GFI
Sbjct: 115 IYP---TQVLGTVFVEKYSFFTIILGFI 139


>gi|290559124|gb|EFD92489.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 158

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 51/106 (48%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + S+ F + S M I ++ L+V+ +N I+S+  +    ++   + L L A F+ +  L+
Sbjct: 1   MDIGSIGFIIISLMLIATALLMVSTKNMIHSLLYMFMFVISVTAMILYLNAVFLGIAELI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           +Y G +++     I  +         RK    L   F+G+ +  L+
Sbjct: 61  IYNGGIVLLLAIGISSMPEGKVNLLNRKIAYVLPVIFLGVTSFLLL 106


>gi|156937934|ref|YP_001435730.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ignicoccus
           hospitalis KIN4/I]
 gi|156566918|gb|ABU82323.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ignicoccus
           hospitalis KIN4/I]
          Length = 160

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 10/153 (6%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F L   +A   +  V+   + + +  SL+  F+      L LGA FV  + +++  GAV
Sbjct: 3   AFVLLMGLATAFAAAVLWDPDIVRAASSLVMVFLLTGFALLSLGAWFVGAMQVLLGAGAV 62

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            +  L+  +      EV   R       +  I  LA  ++  +  F+  +  G  +   F
Sbjct: 63  AILALYAAITSKKRKEVLRSRS------AGTIAALALSVLGISMGFLTLNTPGTFT---F 113

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
             ++   I +VL+      +     +L++++I 
Sbjct: 114 YSSDASKIAEVLFEDVGLTV-ALSVLLIVALIA 145


>gi|13541941|ref|NP_111629.1| NADH dehydrogenase subunit J [Thermoplasma volcanium GSS1]
 gi|14325372|dbj|BAB60276.1| NADH dehydrogenase I chain G [Thermoplasma volcanium GSS1]
          Length = 82

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          +L F + +   I  S L V  +N  +S   L       A  FL LGA FVA + ++VY+G
Sbjct: 4  TLIFSIIAVFLIAFSVLSVKEKNITHSAIYLFLFLFILAAEFLFLGASFVAAVEILVYIG 63

Query: 65 AVIVFFLFIIMMLDIDI 81
          AV+   +F +M+     
Sbjct: 64 AVVTLIVFTVMLTGGKE 80


>gi|15897267|ref|NP_341872.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus P2]
 gi|284174516|ref|ZP_06388485.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus 98/2]
 gi|13813472|gb|AAK40662.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus P2]
 gi|261601936|gb|ACX91539.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus
           solfataricus 98/2]
          Length = 167

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 14/169 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAE----FVAMI 57
           ++Q + F  F  M I  S  +V  +N  Y   SL F  ++ A L + L A       ++ 
Sbjct: 8   IIQYILFGFFGVMTIAFSIYIVRAKNVFYGAVSLAFLGLSIAAL-IALEAPSTYGIYSVF 66

Query: 58  TLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            +++YVGA  V FL I +++  D+EV          G   +GILA   +      +VF +
Sbjct: 67  HILLYVGA-TVTFLAISLVMFKDLEVK--------FGRGALGILAGGAVTLLFLIIVFIS 117

Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             ++S    +  N + +   L   Y +PL I    LL ++I AI L  R
Sbjct: 118 IPQVSSAEVQPINFQVLANDLIENYWFPLIILVIALLTTLIEAISLARR 166


>gi|62736216|ref|YP_227575.1| NADH dehydrogenase subunit 6 [Candida orthopsilosis]
 gi|62177728|gb|AAX73020.1| NADH dehydrogenase subunit 6 [Candida orthopsilosis]
 gi|170785415|gb|ACB37772.1| NADH dehydrogenase subunit 6 [Candida orthopsilosis]
          Length = 155

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 72/149 (48%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           ISS L + + +P+ S+  LI  FV+AA      G   + ++ +++YVGA+ + FLFI+ +
Sbjct: 7   ISSILAIGLLSPVQSIVCLIVLFVSAAISLYSNGFVLMGILYVLIYVGAIAILFLFILSL 66

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
           L+I+           F       I               +     + L+     +  +G 
Sbjct: 67  LNIEYNYKGTIHPLIFTILLICLIPLDLSYDTYGIVENVNIAYPFNGLLDWDLELSTVGT 126

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165
           +LYT+YA P+ + G IL+LS+IGAI +  
Sbjct: 127 LLYTEYAIPMILIGLILILSVIGAIAITK 155


>gi|38640868|ref|NP_943643.1| NADH dehydrogenase subunit 6 [Candida parapsilosis]
 gi|1352588|sp|P48923|NU6M_CANPA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|38564100|emb|CAE54605.1| NADH dehydrogenase subunit 6 [Candida parapsilosis]
 gi|183229570|gb|ACC60284.1| Nad6p [Candida parapsilosis]
          Length = 155

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 72/149 (48%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           ISS L + + +P+ S+  LI  FV+AA      G   + ++ +++YVGA+ + FLFI+ +
Sbjct: 7   ISSILAIGLLSPVQSIVCLIVLFVSAAISLYSNGFVLMGILYVLIYVGAIAILFLFILSL 66

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
           L+I+           F       I               +     + L+     +  +G 
Sbjct: 67  LNIEYNYKGTIHPLIFTILIICLIPLDLSYETYGIVENVNIAYPFNSLLDWDLELTTVGS 126

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165
           +LYT+YA P+ + G IL+LS+IGAI +  
Sbjct: 127 LLYTEYAIPMILIGLILILSVIGAIAITK 155


>gi|146304648|ref|YP_001191964.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Metallosphaera sedula DSM 5348]
 gi|145702898|gb|ABP96040.1| NADH dehydrogenase subunit J [Metallosphaera sedula DSM 5348]
          Length = 166

 Score = 48.1 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAE---FVAMIT 58
             Q   F+LFS  A+ ++  +V  +N  YS  SL F  ++ A L   L  E     +   
Sbjct: 7   DFQIGIFFLFSIFALATALFIVNSKNVFYSAVSLAFLGISVAVLIADLDPEAYSLYSAFH 66

Query: 59  LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           L++YVGA  V FL I +++   +EV E R       +    +    ++V +++       
Sbjct: 67  LLLYVGA-TVVFLSISLVMFRGLEVKEIRTPWAPAMALLSAVAFFAVLVLSTS------- 118

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             ++ +  +  N+  +G+ + +QY +P  +    LL +MI A+ L  R
Sbjct: 119 -SITPVQIQPLNLAVVGEKIVSQYWFPAVVLVIALLTTMIEALSLARR 165


>gi|48478479|ref|YP_024185.1| NADH dehydrogenase subunit J [Picrophilus torridus DSM 9790]
 gi|48431127|gb|AAT43992.1| NADH-quinone oxidoreductase chain J [Picrophilus torridus DSM 9790]
          Length = 73

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            + +  N+  IG  L++ Y  P E+   IL+ ++IG + +    RR
Sbjct: 28  FIIRSQNISRIGTELFSTYIIPFELLSLILVAAIIGVMYIAWEERR 73


>gi|1171833|sp|P43193|NU6M_ALCTO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394660|emb|CAA52121.1| NADH dehydrogenase subunit 6 [Alca torda]
 gi|21104302|emb|CAC80344.1| NADH dehydrogenase subunit 6 [Alca torda]
          Length = 173

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFMFFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G+ F+G+L   +++
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVIGYGAGFVGVLMVGMVI 104


>gi|284990230|ref|YP_003408784.1| putative NADH dehydrogenase chain J [Geodermatophilus obscurus DSM
           43160]
 gi|284063475|gb|ADB74413.1| putative NADH dehydrogenase chain J [Geodermatophilus obscurus DSM
           43160]
          Length = 193

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 63/159 (39%), Gaps = 4/159 (2%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
              +++++   V  V +   + F+L+ +F+   G+ +     ++A +T ++    + V  
Sbjct: 16  LGGLSVVAGIAVFVVDSMARATFALLASFLAVTGVLVAFDLPYLAFVTALMMTIEMAVMA 75

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           +F+IM +     +          GS  +G     ++       V++ +    R     ++
Sbjct: 76  VFMIMFMMNPAGLMPMTMVHNARGSAVLGAGVFAVLTVG----VWTIDWPTRRGELPADS 131

Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
              +G+ +   +   + + G  L  +++   VL     R
Sbjct: 132 TMQLGEAIMGSHMLVMLVIGVGLFATIVSGTVLATARGR 170


>gi|57854707|ref|YP_187573.1| NADH dehydrogenase subunit 6 [Luidia quinalia]
 gi|57506691|dbj|BAD86681.1| NADH dehydrogenase subunit 6 [Luidia quinalia]
          Length = 163

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+   +  I   LV    +P Y    L+   ++   +  LLG  F+A+I +++Y+G 
Sbjct: 1   MIFYVAFIVMFIGGTLVFYSLSPYYGALGLVLVALSGCIISGLLGISFMALILVLIYMGG 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F++   +      +     K   L    +G+L   + +   +F+  + EG  S   
Sbjct: 61  MLVVFVYSTAISAERYPIVSGTLKE-VLSLLAVGVLW--VFIGFDSFLTLNVEGWESFC- 116

Query: 126 FKGNNVENIGK-VLYTQYAYPLEISGFILLLSMIGAIVLM 164
               N+  +G   L+   +  L  +G+ILL+++I A+V+ 
Sbjct: 117 ----NIGLVGSGSLFGAESLYLFGAGYILLVALIVALVIT 152


>gi|57854653|ref|YP_187599.1| NADH dehydrogenase subunit 6 [Astropecten polyacanthus]
 gi|57506719|dbj|BAD86707.1| NADH dehydrogenase subunit 6 [Astropecten polyacanthus]
          Length = 163

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 7/159 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY    +      LV    +P Y    L+   ++      L+G  F+A+I +++Y+G 
Sbjct: 1   MIFYSLFVIMFFGGTLVFYSLSPYYGALGLVVVALSGCIFVSLVGVPFMALILILIYMGG 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F++   +            K   + S  I            N  + S     +  +
Sbjct: 61  MLVVFVYSTAISAERYPTVSIDFKEIVILSLLIISWVLINFDLFVNGEISSWLSVANPGL 120

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
                       LY +  + L   G+ILL+++I A+++ 
Sbjct: 121 LGSG-------ELYNEMGWYLIGGGYILLVALIVALIIT 152


>gi|15922549|ref|NP_378218.1| NADH-plastoquinone oxidoreductase subunit 6 [Sulfolobus tokodaii
           str. 7]
 gi|15623339|dbj|BAB67327.1| 165aa long hypothetical NADH-plastoquinone oxidoreductase subunit 6
           [Sulfolobus tokodaii str. 7]
          Length = 165

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 10/167 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG--AEFVAMITL 59
             Q  FF  F  ++I S+  +   +N  Y+   LIF  ++ A +  L+     F +   +
Sbjct: 6   DFQVSFFVFFGIISIASALFITRQKNVFYAAIGLIFLGISVAAMIALINFAYSFYSAFHI 65

Query: 60  VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           ++YVG+ +VF    ++M            K   +    I  L   + V    F  FS+  
Sbjct: 66  LLYVGSTVVFLAISLVMFRG------LNVKEVKISWAPIIALLVGVFVFIDIFATFSSIT 119

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
            +S L  +  +++ +   +   Y +P  I    LL +MI AI L  R
Sbjct: 120 PVSTL--EVFSLQTLANEILQNYWFPALILIIALLTTMIEAISLARR 164


>gi|257077084|ref|ZP_05571445.1| hypothetical protein Faci_08471 [Ferroplasma acidarmanus fer1]
          Length = 83

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 46/79 (58%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          + ++ F++ + +A+I +   ++ +N I+S   L+   +  + +F+ LG  FV  I L+VY
Sbjct: 2  IDTIIFFILAAIAVIMALSAISTKNLIHSSIFLLILLLMFSIIFIFLGLSFVGSIELLVY 61

Query: 63 VGAVIVFFLFIIMMLDIDI 81
           GAV++  +F++M+     
Sbjct: 62 AGAVVMLIVFVLMLTGGKD 80


>gi|224373438|ref|YP_002607810.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
          [Nautilia profundicola AmH]
 gi|223589204|gb|ACM92940.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily
          [Nautilia profundicola AmH]
          Length = 155

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 36/75 (48%)

Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           +A+I + + +T +N + +V + +         ++L+  + + +  + VY G ++V  LF
Sbjct: 7  ALAVILAVMSLTQKNTVPAVLAFVMMMFLLGIYYILMDEKLLGLFQIFVYTGGIVVLTLF 66

Query: 73 IIMMLDIDIEVAEPR 87
           + ++       E R
Sbjct: 67 GVTVIGAKFPKFEIR 81


>gi|49146207|ref|YP_025987.1| NADH dehydrogenase subunit 6 [Anseranas semipalmata]
 gi|37960693|gb|AAP47792.1| NADH dehydrogenase subunit 6 [Anseranas semipalmata]
          Length = 173

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 48/103 (46%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +  S   ++ +  V +  +P Y V  L+ A V   G  L LGA FV++   +VY+G
Sbjct: 2   TYFVFFLSVCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLLSLGASFVSLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A         G+  + ++ A ++ 
Sbjct: 62  GMLVVFVYSVSLAAEPFPEAWGDWGVMGYGAGLVSVVFAGVVF 104


>gi|62736232|ref|YP_227560.1| NADH dehydrogenase subunit 6 [Candida metapsilosis]
 gi|62177744|gb|AAX73035.1| NADH dehydrogenase subunit 6 [Candida metapsilosis]
 gi|170779377|gb|ACB37041.1| NADH dehydrogenase subunit 6 [Candida metapsilosis]
          Length = 155

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 71/149 (47%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           ISS L + + +P+ S+  LI  FV+AA      G   + ++ +++YVGA+ + FLFI+ +
Sbjct: 7   ISSILAIGLLSPVQSIVCLIVLFVSAAISLYSNGFVLMGILYVLIYVGAIAILFLFILSL 66

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
           L+I+                   I               +     + L+     +  +G 
Sbjct: 67  LNIEYNYKGTIHPLILTILLICLIPLDLSYETYGIVENVNIAYPFNGLLDWDLELTTVGS 126

Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165
           +LYT+YA P+ + G IL+LS+IGAI +  
Sbjct: 127 LLYTEYAIPMILIGLILILSVIGAIAITK 155


>gi|11643245|gb|AAG39483.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
          Length = 172

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F   S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2   MKFVLF--LSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G  F +G++     V +  F V    G +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTV 117

Query: 122 SRL 124
           + +
Sbjct: 118 NNV 120


>gi|149195036|ref|ZP_01872128.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Caminibacter
           mediatlanticus TB-2]
 gi|149134749|gb|EDM23233.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Caminibacter
           mediatlanticus TB-2]
          Length = 155

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
            +AII + + +T +N + +V + +         ++ LG + + +  + VY G ++V  LF
Sbjct: 7   VIAIILAVMSLTQKNTVGAVIAFVMMMFLLGIYYIFLGEKLLGLFQIFVYTGGIVVLTLF 66

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            + ++          K R +  S    IL   +I+
Sbjct: 67  GVTVIGAKFP---EFKIRPWAISIVTVILIGLMII 98


>gi|109689691|ref|YP_659575.1| NADH dehydrogenase subunit 6 [Ventrifossa garmani]
 gi|109452375|dbj|BAE96408.1| NADH dehydrogenase subunit 6 [Ventrifossa garmani]
          Length = 173

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S + I+ +  + +  +P+Y+   L+     A+ L +  G  F++++  +VY+G V+V 
Sbjct: 7   MLSGVFILGAVALASSPSPVYAALGLVLMAGGASMLLIDSGGPFLSLLFYLVYLGGVLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           F   + +   +   A        L    +GI  +       N++ +S+   L+ 
Sbjct: 67  FAHCVALAADNYPKAWGDV---ILLMVLVGITVSWTAAAVFNWLDWSSLALLNT 117


>gi|57854578|ref|YP_187586.1| NADH dehydrogenase subunit 6 [Asterias amurensis]
 gi|57506705|dbj|BAD86694.1| NADH dehydrogenase subunit 6 [Asterias amurensis]
          Length = 162

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 10/160 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY    + ++ S LV    +P Y    L+   ++   L  L+G  F+A++ L++Y+G 
Sbjct: 1   MIFYFTFILMLLGSTLVFYSLSPYYGALGLVIVAMSGCILCGLVGLSFMALVLLLIYIGG 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F++   +      V    K+          +    ++  + NF +     ELS + 
Sbjct: 61  MLVVFVYSSALSAERYPVVSNIKE-------VTILFLILVLWISLNFDLVLNLSELSWM- 112

Query: 126 FKGNNVENIGK-VLYTQYAYPLEISGFILLLSMIGAIVLM 164
              +N++ IG   LY    + L + G+IL +++I A+V+ 
Sbjct: 113 -SHSNLDLIGSGNLYNNVWWYLGVGGYILFIALIVALVIT 151


>gi|70608046|ref|YP_256916.1| hypothetical protein Saci_2341 [Sulfolobus acidocaldarius DSM 639]
 gi|68568694|gb|AAY81623.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 168

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 10/170 (5%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG---AEFVAMIT 58
             Q  F  LFS  AI SS L+V  +N  YS  +L    V+ A +  LL      F + + 
Sbjct: 6   DFQLAFLLLFSVFAIASSLLIVRQKNVFYSAVALGLLGVSVAVIIALLNPIAYSFYSALH 65

Query: 59  LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           L++YVG+  + FL + +++   +EV E R     +  F         +V    F++   E
Sbjct: 66  LILYVGS-AIVFLSVSLVVFRGLEVKERRVAWASILGFITA------LVVFFAFILTFVE 118

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
              + L  +   +      L + Y +P+ I    L  ++I A+ L    +
Sbjct: 119 NTPTPLQAQVFTLSTFANTLLSDYWFPILILVIALATTLIEALSLARGGK 168


>gi|118431450|ref|NP_147931.2| NuoJ-like protein [Aeropyrum pernix K1]
 gi|116062774|dbj|BAA80415.2| NuoJ homolog [Aeropyrum pernix K1]
          Length = 160

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 14/162 (8%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            +++      + +A + S  VV  R+ +YS  +L    ++ A +  LLG   VA+  ++V
Sbjct: 4   SLEAAVLIGVAGLATLFSMFVVRHRDMVYSSAALALVGLSTAAVVGLLGFPLVAVFLVIV 63

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           YVGA ++F +  + ML           +         G+ AA         + F      
Sbjct: 64  YVGAAVMFIIVSVSMLGGGGREEWDEWR---------GLAAAAAAFSTVTLLGFIGGLWQ 114

Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
                +  N+E I  VL T+  YP+     I+L + + A +L
Sbjct: 115 LYTPPQPVNLETIALVL-TRDLYPV----VIVLAAGLAATIL 151


>gi|226453420|ref|YP_002791079.1| NADH dehydrogenase subunit 6 [Tarentola mauritanica]
 gi|167030956|gb|ABZ05717.1| NADH dehydrogenase subunit 6 [Tarentola mauritanica]
          Length = 178

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 2/103 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+   +FF       ++    V +  +P Y V  L+F  +      + LG  F+ ++  +
Sbjct: 1   MLYFVIFFSFLCL--LLGGVGVASNPSPFYGVVGLVFGALAGCVALVSLGGSFIGLVLFI 58

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103
           VY+G ++V F + + +               ++  + + +L  
Sbjct: 59  VYLGGMMVVFAYSVALAAEPYPEDSGGTILWWVLCYVVLVLFL 101


>gi|256593070|gb|ACV03490.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. SCF-2009]
          Length = 53

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 36/50 (72%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAM 56
           F +FS   + +SF+V++  NP+YSVF L+ AFVNAA +F+ LG +++ +
Sbjct: 4  LFMIFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGL 53


>gi|16082007|ref|NP_394424.1| NADH dehydrogenase subunit J [Thermoplasma acidophilum DSM 1728]
 gi|10640279|emb|CAC12093.1| NADH dehydrogenase, chain J related protein [Thermoplasma
          acidophilum]
          Length = 82

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          +L F L +   I  S + V  +N  +SV  L    +  A  FL +GA F+A + ++VY+G
Sbjct: 4  TLIFSLIAIFLIAFSVMSVREKNLTHSVIYLFLFLIILASEFLFIGASFIAAVEVLVYIG 63

Query: 65 AVIVFFLFIIMMLDIDI 81
          AV+    F +M+     
Sbjct: 64 AVVTILAFTVMLTGGKE 80


>gi|312183563|gb|ADQ42351.1| NADH:ubiquinone oxidoreductase J [Methanosaeta harundinacea]
          Length = 88

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN------VENIGKVLYTQYAYPLEI 148
           S  + I  A LIV  +       E        +  N      + +IG  ++T Y    E+
Sbjct: 7   SILMLIFLATLIVLLAATPWGGEEMGSYSFEPREGNRAPESGIGDIGVEIFTLYIVAFEV 66

Query: 149 SGFILLLSMIGAIVLMLRH 167
            G +LL +MIGAI +  + 
Sbjct: 67  LGLVLLAAMIGAIYVARKE 85


>gi|116662189|ref|YP_829244.1| hypothetical protein Arth_4494 [Arthrobacter sp. FB24]
 gi|116612941|gb|ABK05663.1| NADH dehydrogenase subunit J [Arthrobacter sp. FB24]
          Length = 204

 Score = 45.0 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 68/167 (40%), Gaps = 4/167 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + ++ F   + +A+ +   V    +   + ++L  +FV    + L  G +++ ++T+++ 
Sbjct: 2   LTTVIFAALALIAVAAGIAVFRTDSMARATYALAVSFVAVGAMMLQFGLDYIGVVTILMM 61

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           V  + +  +F++M + ++  +          GS  I      ++   +  + + A     
Sbjct: 62  VMEMAIMAIFMVMFMGMNPALMPMDMVHNKRGSLLISSGVFAVLAAGALLVPWPARRGAP 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            +    +    +G+ +       +     +L  +++ A+VL     R
Sbjct: 122 AVDLTAS----LGEAIMGNKMLVMLTVSPVLFATLVSAVVLANPRGR 164


>gi|195975757|ref|YP_002122384.1| NADH dehydrogenase subunit 6 [Candida neerlandica]
 gi|162423297|gb|ABX89436.1| NADH dehydrogenase subunit 6 [Candida neerlandica]
          Length = 146

 Score = 45.0 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 9/133 (6%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S ++ I+S L + + +P+ S+ +LI  F++ A      G   + ++ ++VYVGA+ + FL
Sbjct: 2   SIISGIASILAIGLLSPVQSILALICLFISIAISLYSSGYVLMGILYILVYVGAIAILFL 61

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
           FI+ +L+I+            +G     I+   +I+     + + +   +  L    N +
Sbjct: 62  FILSLLNIE---------YKPVGGMNPLIIFFIIILLLPFDISYDSYAPIESLSTTYNEL 112

Query: 132 ENIGKVLYTQYAY 144
             IG + Y++YAY
Sbjct: 113 NIIGSIFYSEYAY 125


>gi|261864031|gb|ACY01517.1| NADH dehydrogenase subunit 6 [Apteryx australis mantelli]
          Length = 173

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      ++    V +  +P Y V  L+   V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVFFLGLCFVLGVLAVASNPSPYYGVLGLVMGSVAGCGCLLSLGVSFVSLVLFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ ++   +++   
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGSWRVWGYGVGFLLVIFMGVVMGGL 107


>gi|94490653|ref|YP_588184.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus]
 gi|90990881|dbj|BAE92874.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus]
          Length = 173

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      ++    V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+G
Sbjct: 2   TYFMFFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGMSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  FI +LAA  +V   
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFIVVLAAGAVVGGL 107


>gi|28916747|ref|NP_803168.1| NADH dehydrogenase subunit 6 [Pisaster ochraceus]
 gi|28881692|emb|CAD70486.1| NADH dehydrogenase subunit 6 [Pisaster ochraceus]
          Length = 162

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FYL     ++ S LV    +P Y    L+   ++   L  L+G  F+A++ L++YVG 
Sbjct: 1   MIFYLTFIFMLLGSTLVFYSLSPYYGALGLVIVSMSGCILCSLVGLSFMALVLLLIYVGG 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F++   +      V     +        + +    ++  + NF +     E+  + 
Sbjct: 61  MLVVFVYSSALSAERYPVVSNVNE-------VLVLFLILVLWVSLNFDLLLNFSEVGWVT 113

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
           +   ++   G VLY+Q  + L + G+IL + +I A+V+ 
Sbjct: 114 YNNVDLVG-GGVLYSQVWWYLVVGGYILFVGLIVALVVT 151


>gi|19481576|gb|AAL88860.1|AF407127_1 NADH dehydrogenase subunit 6 [Petronia dentata]
          Length = 159

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 2/115 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F++ + +       A         G     ++   L++     ++ S 
Sbjct: 60  LGGMLVVFVYSVSLAADPYPEAWDSWGVAGYGLGMSLVVMVGLVMGGMGELLVSG 114


>gi|224588006|ref|YP_002640537.1| NADH dehydrogenase subunit 6 [Gallirallus okinawae]
 gi|224471565|dbj|BAH24060.1| NADH dehydrogenase subunit 6 [Gallirallus okinawae]
          Length = 173

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            Y      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G +
Sbjct: 4  LMYFLGVCFVLGGLGVASNPSPYYGVVGLVLASVAGCGWLLSLGLSFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V FL+ + +            +
Sbjct: 64 LVVFLYSVSLAADPYPEGWGDWR 86


>gi|37596525|gb|AAQ95023.1| NADH dehydrogenase subunit 6 [Amadina erythrocephala]
          Length = 159

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F  F F  ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2   MEFVLFLGFCF--VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G SF +G++     V    F V   EG +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYSFGMGLVVMVGFVIGGVFEVLVDEGTV 117

Query: 122 S 122
           S
Sbjct: 118 S 118


>gi|66276085|ref|YP_238228.1| NADH dehydrogenase subunit 6 [Gavia stellata]
 gi|34223664|gb|AAQ63019.1| NADH dehydrogenase subunit 6 [Gavia stellata]
          Length = 173

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (47%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L S   I+    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLLLSVCFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G+ F  +L A ++V
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVMGYGAGFALVLTAGVVV 104


>gi|16797925|gb|AAL29215.1| NADH dehydrogenase subunit 6 [Calidris tenuirostris]
          Length = 173

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 48/106 (45%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  FI +L A +IV   
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFILVLIAGVIVGGL 107


>gi|1171839|sp|P43196|NU6M_CALMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394670|emb|CAA52138.1| NADH dehydrogenase subunit 6 [Calidris maritima]
          Length = 173

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 47/101 (46%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V 
Sbjct: 7   LLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           F++ + +       A    +    G+ FI ++ A +IV   
Sbjct: 67  FVYSVSLAADPFPEAWGDWRVVGYGASFILVVIAGMIVGGL 107


>gi|21104306|emb|CAC80350.1| NADH dehydrogenase subunit 6 [Pinguinus impennis]
          Length = 173

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G  FI +L   +IV
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVGFITVLMMGVIV 104


>gi|37596551|gb|AAQ95036.1| NADH dehydrogenase subunit 6 [Lonchura fringilloides]
          Length = 159

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +G ++V F++ + +       +         G     ++   L++     MV
Sbjct: 60  LGGMLVVFVYSVSLAADPYPESWMDWGVASYGFGMGLVIVIGLVIGGITGMV 111


>gi|22536160|gb|AAN01230.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. grubii]
          Length = 160

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 35/160 (21%)

Query: 45  LFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGI 100
             +LLG  FV +  L+VYVGA+ + FLF++MML+I I     V     K   LG     +
Sbjct: 1   YLVLLGVGFVGISYLIVYVGAIAILFLFVVMMLNISITEIVSVGREYTKNLPLGFVVGTV 60

Query: 101 LAAELI------------------------VCASNFMVFSAEGELSRLVFKGNN------ 130
              E++                        +   N  + +++  ++      +N      
Sbjct: 61  FFFEILSVIPAATTNAGELPLGLFTYLNGLLLGVNTSITNSDVNMAFANTGADNAFSSHL 120

Query: 131 -VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169
            +E IG  LYT  +  L ++ FILLL+M+G I L LR R 
Sbjct: 121 QIEAIGHGLYTYGSVWLLLASFILLLAMVGPIALCLRPRT 160


>gi|13116563|ref|NP_076842.1| NADH dehydrogenase subunit 6 [Dinornis giganteus]
 gi|12957439|gb|AAK07714.1| NADH dehydrogenase subunit 6 [Dinornis giganteus]
          Length = 173

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        I+ +  V +  +P Y V  L+   V   G  L LGA F++++  +VY+G
Sbjct: 2   TYFVLFLGVCFILGALAVASNPSPYYGVLGLVVGSVMGCGWLLSLGASFISLVLFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
            ++V F++ + +            +    G+  + ++   L+
Sbjct: 62  GMLVVFVYSVSLAADPFPETWGDWRVLGFGAGLVLVVFGGLM 103


>gi|37596523|gb|AAQ95022.1| NADH dehydrogenase subunit 6 [Amadina fasciata]
          Length = 159

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F  F F  ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2   MEFVLFLGFCF--VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G SF IG++     V    F V   EG +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYSFGIGLVVMIGFVVGGVFEVLVDEGVV 117

Query: 122 S 122
           S
Sbjct: 118 S 118


>gi|255572452|ref|XP_002527162.1| conserved hypothetical protein [Ricinus communis]
 gi|223533483|gb|EEF35228.1| conserved hypothetical protein [Ricinus communis]
          Length = 55

 Score = 44.2 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 157 MIGAIVLMLRHRRD--IKRQDISKQLESNPDNSI 188
           MIGAIVL +       +KRQD+ +Q   +   +I
Sbjct: 1   MIGAIVLTMHRTTHEAVKRQDLFRQNAIDFRRTI 34


>gi|1171852|sp|P43208|NU6M_URILO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394692|emb|CAA52119.1| NADH dehydrogenase subunit 6 [Uria lomvia]
 gi|21104314|emb|CAC80356.1| NADH dehydrogenase subunit 6 [Uria lomvia]
          Length = 172

 Score = 44.2 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V      L LG  FV+++  +VY+G
Sbjct: 2   TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCAWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G  F+ +L   ++V
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVVGYGMGFVAVLVMGMVV 104


>gi|2660574|emb|CAA71361.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca]
 gi|2660576|emb|CAA71267.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca]
 gi|13508726|emb|CAC35111.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca]
 gi|13508729|emb|CAC35113.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca]
 gi|14268378|emb|CAC39329.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca]
          Length = 172

 Score = 44.2 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          MQ + F       ++    V +  +P Y V  L+ A +   G  + LGA FV+++ ++VY
Sbjct: 2  MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGASFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84
          +G ++V F++ + +       A
Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81


>gi|240266656|ref|YP_002971033.1| NADH dehydrogenase subunit 6 [Cygnus atratus]
 gi|209887461|gb|ACI95078.1| NADH dehydrogenase subunit 6 [Cygnus atratus]
          Length = 173

 Score = 44.2 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 47/103 (45%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2   AYFMFFLGICFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +     + F+ ++ A L+ 
Sbjct: 62  GMLVVFVYSVALAAEPFPEAWGDWRVVGYAAVFVTVVFAGLVF 104


>gi|330834248|ref|YP_004408976.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Metallosphaera cuprina Ar-4]
 gi|329566387|gb|AEB94492.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
           [Metallosphaera cuprina Ar-4]
          Length = 154

 Score = 44.2 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 13/161 (8%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG---AEFVAMITLVVYVGAV 66
           LFS +A+ ++  +V  +N  YS  SL F  ++ A L   +        +   L++YVGA 
Sbjct: 2   LFSILALATALFIVNSKNVFYSAVSLAFLGISVAVLIADINPAAYSLYSAFHLILYVGAT 61

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +VF    ++M                + + +   LA    +     +V S          
Sbjct: 62  VVFLSISLVMFRGLEVKE--------VKTPWAPSLAIVAAIAFFAVLVLSTSSITPSGTP 113

Query: 127 KGNNVENIGKVLYTQYAYP-LEISGFILLLSMIGAIVLMLR 166
           +  N+  +G+ L +QY +P   +    LL +MI A+ L  R
Sbjct: 114 EQLNLAVVGEKLISQYWFPTFILI-VALLTTMIEALSLARR 153


>gi|55583313|dbj|BAD69578.1| NADH dehydrogenase subunit 6 [Lingula anatina]
          Length = 201

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            M + F  + +   ++S FL++    P+    SLI  FV ++ L  L+   +V  I  ++
Sbjct: 8   DMVAFFMLVLATCMVVSMFLMLVSPTPMQLSCSLIGFFVTSSCLVALIVHPWVGAILFLI 67

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           Y G ++V F++++ M D   E+   +     L    + +  + + +    +M  + E
Sbjct: 68  YGGVILVAFVYVLAM-DPSDEMKISKMDWHLLKVVPLILAVSVIPLFFGGWMGETTE 123


>gi|37596553|gb|AAQ95037.1| NADH dehydrogenase subunit 6 [Lonchura bicolor bicolor]
          Length = 159

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +G ++V F++ + +       +         G     ++   L++     MV
Sbjct: 60  LGGMLVVFVYSVSLAADPYPESWVDWGVASYGFGMGLVIVVGLVIGGITGMV 111


>gi|16797931|gb|AAL29218.1| NADH dehydrogenase subunit 6 [Pluvialis squatarola]
          Length = 173

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 49/106 (46%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++ +  V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLFLGVCFVLGALAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ +LA  L++  S
Sbjct: 62  GMLVVFVYSVALAADPFPEAWGDWRVVGYGVSFVLVLAVGLVIGGS 107


>gi|225690854|gb|ACO06111.1| NADH dehydrogenase subunit 6 [Cleisthenes herzensteini]
          Length = 173

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 44/113 (38%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   Y   F  ++    V +  +P Y+ + L+        + +  GA F++MI  ++Y+G
Sbjct: 2   AFVMYFILFFFVLGLVAVASNPSPYYAAYGLVVVAGMGCSVLIGHGAPFLSMILFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F F + M      V          G  ++   AA   V    +   S 
Sbjct: 62  GMLVVFAFAVAMASEPHPVGWNSWAVLGYGLVYMAATAAVAGVLRGGWYESSW 114


>gi|322422405|ref|YP_004221834.1| NADH dehydrogenase subunit 6 [Ixobrychus cinnamomeus]
 gi|316891687|gb|ADU57296.1| NADH dehydrogenase subunit 6 [Ixobrychus cinnamomeus]
          Length = 173

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LGA F++++  +VY+G
Sbjct: 2   TYFVIFLGVCFVLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGASFISLVLFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
            ++V FL+ + +       A    +   +G     +L   +       +
Sbjct: 62  GMLVVFLYSVSLAADPFPEAWGDWR--VVGYGVGFVLVCVMGAVIGGLV 108


>gi|1171850|sp|P43206|NU6M_SYNWU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394688|emb|CAA52124.1| NADH dehydrogenase subunit 6 [Synthliboramphus wumizusume]
          Length = 173

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 47/107 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFMLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            ++V F++ + +       A    +    G  FI +LAA  +V    
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFIVVLAAGAVVGGLA 108


>gi|16797934|gb|AAL29219.1| NADH dehydrogenase subunit 6 [Arenaria interpres]
          Length = 173

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 49/107 (45%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            ++V F++ + +       A    +    G+ F+ ++ + ++V    
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVVGYGAGFMLVVISGMVVGGIG 108


>gi|1171848|sp|P43204|NU6M_SYNAN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394684|emb|CAA52125.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus]
          Length = 173

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 47/106 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+G
Sbjct: 2   TYFMLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGMSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  FI +LAA  +V   
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFIVVLAAGAVVGGL 107


>gi|288903516|ref|YP_003434271.1| NADH dehydrogenase subunit 6 [Candida sojae]
 gi|162401878|gb|ABO27137.1| NADH dehydrogenase subunit 6 [Candida sojae]
          Length = 146

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 9/154 (5%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S ++ I+S L + + +P+ S+ +LI  F++ A      G   + ++ ++VYVGA+ + FL
Sbjct: 2   SLISGIASVLAIGLLSPVQSILALICLFLSVAVSLYSSGYVLMGILYILVYVGAIAILFL 61

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
           FI+ +L+I+            +G     I+   LI+     + F +   +  +    N +
Sbjct: 62  FILSLLNIE---------YTPVGGMSPLIIFLLLILLLPLDISFDSYAPIESVYTAYNEL 112

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
           + IG + Y++YA  L + G IL+LS+IGAI +  
Sbjct: 113 DIIGTLFYSEYALILLLLGIILVLSVIGAIAITR 146


>gi|213024364|ref|ZP_03338811.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 100

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 96  FFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155
               +L+A ++      ++   +  +          + +G  L+  Y   +E++  +LL 
Sbjct: 10  IGPAVLSAIMLAVIVYAILGVNDQGIDGTPISA---KAVGITLFGPYVLAVELASMLLLA 66

Query: 156 SMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVK 194
            ++ A          + R++ + ++ SN  +     K +
Sbjct: 67  GLVVAF--------HVGREERAGEVLSNRADDRAKRKTE 97


>gi|2660580|emb|CAA71364.1| NADH dehydrogenase subunit 6 [Luscinia svecica]
          Length = 172

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          MQ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MQFVLF--LGVCFVLGGLAVASNPSPYYGVLGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84
          +G ++V F++ + +       A
Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81


>gi|288900904|ref|YP_003433752.1| Nad6p [Candida viswanathii]
 gi|162401891|gb|ABP03912.1| Nad6p [Candida viswanathii]
          Length = 146

 Score = 43.9 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 82/154 (53%), Gaps = 9/154 (5%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S ++ I+S L + + +P+ S+ +LI  F++ A    + G   + ++ ++VYVGA+ + FL
Sbjct: 2   SLISGIASVLAIGLLSPVQSILALICLFLSIAISLYINGYVLMGILYILVYVGAIAILFL 61

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
           FI+ +L+I+            +G     I+   LI+     + F +   +  +    N +
Sbjct: 62  FILSLLNIE---------YTPVGGMNPLIIFLILIMFLPFDISFESYSPIESINTVTNEL 112

Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
           + +G + Y++YA  L + G IL+LS+IGAI +  
Sbjct: 113 DIVGTLFYSEYALILLLLGIILVLSVIGAIAITR 146


>gi|313126880|ref|YP_004037150.1| hypothetical protein Hbor_21410 [Halogeometricum borinquense DSM
           11551]
 gi|312293245|gb|ADQ67705.1| hypothetical protein Hbor_21410 [Halogeometricum borinquense DSM
           11551]
          Length = 125

 Score = 43.9 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT------ 140
           R +         G+ A  L V      V ++  E        N   +IG  ++       
Sbjct: 4   RPRLKLGSHLVPGLAAVALFVVMVAAFVTASFPEPQGFGGDVNITASIGYAMFNLGFGEV 63

Query: 141 ---QYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
               +    EI   +L+ +++GA++L  R   D   Q
Sbjct: 64  ASESFLVAFEIIDIVLVAALVGAVMLARRETGDSAGQ 100


>gi|37596543|gb|AAQ95032.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
          Length = 159

 Score = 43.9 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +G ++V F++ + +       +         G     ++ A LIV   + ++
Sbjct: 60  LGGMLVVFVYSVSLAADPYPESWADWGVVGYGFGMGLVVVAGLIVGGVSGVL 111


>gi|28972924|gb|AAM95262.1| NADH dehydrogenase subunit 6 [Plexaurella dichotoma]
          Length = 120

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 17/125 (13%)

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
               +IM++    +V                 +   +I    + +  S     + ++   
Sbjct: 1   LXXLVIMLIQQPNKVETQDHSHFLP-------VGLSVIFLFYSLLTNSPTYVSNPVIGSR 53

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDISK 178
            N+  IG  LYT Y   + ++  +LL++MIGAI+L  +                +QD+ +
Sbjct: 54  TNIGAIGSHLYTTYYELVLVASLVLLVAMIGAILLAKQPNSPSLYNSYGDSLRSKQDLFQ 113

Query: 179 QLESN 183
           Q+   
Sbjct: 114 QISRE 118


>gi|238550364|gb|ACR44285.1| NADH dehydrogenase subunit 6 [Melampsora aecidioides]
 gi|238550378|gb|ACR44292.1| NADH dehydrogenase subunit 6 [Melampsora aecidioides]
 gi|238550380|gb|ACR44293.1| NADH dehydrogenase subunit 6 [Melampsora aecidioides]
 gi|238550382|gb|ACR44294.1| NADH dehydrogenase subunit 6 [Melampsora aecidioides]
          Length = 166

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 34/165 (20%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD--- 78
           V+T  +P+ SV  LI  F+  A   +L    +++++ ++VYVGA+IV  LF+I++++   
Sbjct: 2   VITSTSPVTSVVYLITVFLLVAAYLVLQNIVYLSLVLVIVYVGAIIVLILFVIIIINLQD 61

Query: 79  IDIEVAEPRKKRGFLGSFFIGIL-----------AAELIVCASNFMVFSAEGEL-----S 122
           I      P   +G     FI I               +    +  +  S    L     +
Sbjct: 62  IRTTQNIPWSLQGIASLMFIVIFINIDVVHFHADFLSMFQYITLNLNISTNATLDGSSSN 121

Query: 123 RLVFKGNN---------------VENIGKVLYTQYAYPLEISGFI 152
            +V K  N               ++++G  LYT     + I+ F+
Sbjct: 122 WIVEKTTNMVFNPSDMNLFDLSQIQSLGLSLYTHSFIYIIIASFV 166


>gi|37596529|gb|AAQ95025.1| NADH dehydrogenase subunit 6 [Amandava formosa]
          Length = 159

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G  F +G++    ++  S F V   +G +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWADWGVVGYGFGMGLVVMVGLIVGSVFGVLVEDGTV 117


>gi|213026362|ref|ZP_03340809.1| hypothetical protein Salmonelentericaenterica_29535 [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 62

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 45 LFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
          +F  LGA F   + ++VY GA++V F+F++MML++
Sbjct: 8  VFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNL 42


>gi|37596517|gb|AAQ95019.1| NADH dehydrogenase subunit 6 [Nigrita bicolor]
          Length = 159

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V F++ + +        E     G +G  F   L   +      
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVLVVGFIIGG 106


>gi|20340062|gb|AAM19666.1| NADH dehydrogenase subunit 6 [Calidris acuminata]
          Length = 173

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ ++   +IV   
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVVGYGMSFVLVVIVGMIVGGL 107


>gi|37596541|gb|AAQ95031.1| NADH dehydrogenase subunit 6 [Poephila cincta]
          Length = 159

 Score = 43.5 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V F++ + +        E     G +G  F   L   + +         A+G
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWADWGVVGYGFGMGLVVMVGLIVGGVSGVLADG 114


>gi|37596445|gb|AAQ94983.1| NADH dehydrogenase subunit 6 [Pytilia hypogrammica]
 gi|37596447|gb|AAQ94984.1| NADH dehydrogenase subunit 6 [Pytilia phoenicoptera]
          Length = 159

 Score = 43.5 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       I+    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G  F +G++    +  A  F V +  G +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLTDGGTV 117


>gi|37596449|gb|AAQ94985.1| NADH dehydrogenase subunit 6 [Pytilia lineata]
          Length = 159

 Score = 43.5 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       I+    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G  F +G++    +  A  F V +  G +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLTDGGTV 117


>gi|1171845|sp|P43202|NU6M_FRACI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394680|emb|CAA52136.1| NADH dehydrogenase subunit 6 [Fratercula cirrhata]
          Length = 173

 Score = 43.5 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 48/103 (46%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F    S   ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLFLSLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G  F+G+L   L++
Sbjct: 62  GMLVVFVYSVALAADPFPEAWGDWRVVGYGVSFVGVLVMGLVI 104


>gi|1085235|pir||S42246 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 6 - snow goose
           mitochondrion
          Length = 173

 Score = 43.5 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +       +    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2   TYFMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +       F+ I+   L+ 
Sbjct: 62  GMLVVFVYSVALAAEPFPGAWGDWRVIGCAVAFVAIVFGGLVF 104


>gi|187251542|ref|YP_001876024.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Elusimicrobium minutum Pei191]
 gi|186971702|gb|ACC98687.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6
           [Elusimicrobium minutum Pei191]
          Length = 161

 Score = 43.5 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            + ++      RN IY+   L        G+   +GA +  +  L V  G + V F    
Sbjct: 11  LVGTALFAAISRNFIYAAMWLALLSATLTGVMFSMGAPWAGVFELSVCSGLITVLFASTA 70

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            +L  D + A  R +R F+    +G+    +++   +F
Sbjct: 71  SLLGADSKYA--RNERKFMRFLPLGLFLFGVVLWFISF 106


>gi|89274126|ref|YP_514831.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
 gi|89146661|gb|ABD62293.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
 gi|90576922|gb|ABD95516.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
 gi|90576936|gb|ABD95529.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
 gi|90576950|gb|ABD95542.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
          Length = 172

 Score = 43.5 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596437|gb|AAQ94979.1| NADH dehydrogenase subunit 6 [Clytospiza monteiri]
          Length = 159

 Score = 43.5 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G  F +G++    +V    F V    G +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWADWGVVGYGFGMGLVVVIGLVIGGMFGVLVEGGTV 117


>gi|116875679|ref|YP_850988.1| NADH dehydrogenase subunit 6 [Xenoturbella bocki]
 gi|110169801|gb|ABG54256.1| NADH dehydrogenase subunit 6 [Xenoturbella bocki]
          Length = 170

 Score = 43.5 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   F YLF    ++S  L+V+  +P +S+  +I   + A+ +  L G   +  I L+VY
Sbjct: 1   MVMNFVYLFPIFFLLSVILIVSSESPYFSIVGVIIYSILASFMMFLWGYSLLGWIFLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VG ++V F F   M                +G  F  +  +  +V  S +   S      
Sbjct: 61  VGGMVVVFSFTASMSSSVFPK---------VGGMFFIVFFSLGLVVLSFYAYLSKWWAFG 111

Query: 123 RLVFKGNN 130
            +   G+N
Sbjct: 112 EVFSFGHN 119


>gi|37596545|gb|AAQ95033.1| NADH dehydrogenase subunit 6 [Emblema pictum]
          Length = 159

 Score = 43.5 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|197935733|ref|YP_002213637.1| NADH dehydrogenase subunit 6 [Anser anser]
 gi|197131218|gb|ACH47164.1| NADH dehydrogenase subunit 6 [Anser anser]
          Length = 173

 Score = 43.5 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +       +    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2   TYFMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +       F+ I+   L+ 
Sbjct: 62  GMLVVFVYSVALAAEPFPGAWGDWRVIGCAVAFVAIVFGGLVF 104


>gi|152942492|emb|CAL30087.1| NADH dehydrogenase subunit 6 [Xenoturbella bocki]
          Length = 170

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   F YLF    ++S  L+V+  +P +S+  +I   + A+ +  L G   +  I L+VY
Sbjct: 1   MVMNFVYLFPIFFLLSVILIVSSESPYFSIVGVIIYSILASFMMFLWGYSLLGWIFLIVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           VG ++V F F   M                +G  F  +  +  +V  S +   S      
Sbjct: 61  VGGMVVVFSFTASMSSSVFPK---------VGGMFFIVFFSLGLVVLSFYAYLSKWWAFG 111

Query: 123 RLVFKGNN 130
            +   G+N
Sbjct: 112 EVFSFGHN 119


>gi|37596511|gb|AAQ95016.1| NADH dehydrogenase subunit 6 [Estrilda perreini perreini]
          Length = 159

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  LI A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLIVAAVAGCGWLVSLGLSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|19481586|gb|AAL88865.1|AF407132_1 NADH dehydrogenase subunit 6 [Scaphidura oryzivora]
          Length = 159

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGVCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|280978137|ref|YP_003345084.1| NADH dehydrogenase subunit 6 [Kaupichthys hyoproroides]
 gi|13928306|dbj|BAB47009.1| NADH dehydrogenase subunit 6 [Kaupichthys hyoproroides]
 gi|271280164|dbj|BAI53209.1| NADH dehydrogenase subunit 6 [Kaupichthys hyoproroides]
          Length = 172

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F+    M ++    V +  +P Y    L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MSYLIFFFL-VMVVVGFLCVASNPSPYYGALGLVLAAAGGCGVLMGFGGSFISLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +   +       +       ++   ++G+ +    +C +  
Sbjct: 60  LGGMLVVFAYSAALATEPYPDSWGSSSVFWVMVLYVGLGSVGAGLCYNGL 109


>gi|325149529|ref|YP_004285982.1| NADH dehydrogenase subunit 6 [Zenaida auriculata]
 gi|304365543|gb|ADM26350.1| NADH dehydrogenase subunit 6 [Zenaida auriculata]
          Length = 172

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       +     V +  +P Y V  L+ A V   G  + LG  FVA++ ++VY
Sbjct: 2   MEFVLF--LGLCFVFGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVALVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V F++ + +        E     G +G      LA  +    +    F   G
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPEAWADWGVVGYGLGMGLAVLVGFVVAGGFEFLGSG 114


>gi|37596469|gb|AAQ94995.1| NADH dehydrogenase subunit 6 [Estrilda erythronotos]
          Length = 159

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|19481574|gb|AAL88859.1|AF407126_1 NADH dehydrogenase subunit 6 [Motacilla alba]
          Length = 159

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVMF--LGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V F++ + +        E     G +G  F   L   + +     + F  +G
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPEAWVNWGVVGYGFGMALVVIVGLAMGGVLEFLVDG 114


>gi|37596533|gb|AAQ95027.1| NADH dehydrogenase subunit 6 [Neochmia temporalis]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V F++ + +        E     G +G  F   L   + +  S 
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWGDWGVVGYGFGMGLVIVIGLVVSG 106


>gi|37596451|gb|AAQ94986.1| NADH dehydrogenase subunit 6 [Pytilia afra]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       I+    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V F++ + +        E     G +G  F   L   + +  +      A+G
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLADG 114


>gi|37596471|gb|AAQ94996.1| NADH dehydrogenase subunit 6 [Estrilda quartinia kilimensis]
 gi|37596473|gb|AAQ94997.1| NADH dehydrogenase subunit 6 [Estrilda melanotis]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596501|gb|AAQ95011.1| NADH dehydrogenase subunit 6 [Spermophaga haematina haematina]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|152992443|ref|YP_001358164.1| NADH-quinone oxidoreductase, chain J [Sulfurovum sp. NBC37-1]
 gi|151424304|dbj|BAF71807.1| NADH-quinone oxidoreductase, chain J [Sulfurovum sp. NBC37-1]
          Length = 157

 Score = 43.1 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 30/81 (37%)

Query: 26  RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85
           +  + ++ S           ++ L A+ + +  + VY G ++V  LF + ++ ++   A 
Sbjct: 20  KKSVPAMISFALMMFLLGIYYVTLDAKLLGLFQIFVYAGGIVVLMLFGVTIIGVEFPKAA 79

Query: 86  PRKKRGFLGSFFIGILAAELI 106
            R            +L     
Sbjct: 80  SRPWAAVSAFLVFVLLTVLFF 100


>gi|37596491|gb|AAQ95006.1| NADH dehydrogenase subunit 6 [Lagonosticta umbrinodorsalis]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G  F   L   + +         AEGE 
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVVVGLVVGGVFGVLAEGET 116


>gi|317176451|dbj|BAJ54270.1| NADH dehydrogenase subunit 6 [Xenomystus nigri]
          Length = 173

 Score = 43.1 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F ++S   ++    V +   P Y+ F L+ A     GL +  G  F++++  ++Y+G +
Sbjct: 4   LFIVYSVGLMLGLVGVASNPAPYYAAFGLVLAAAAGCGLLVGSGGSFLSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +V F +   +     E+         + S+F+  +   + V A  +  + AE  LS
Sbjct: 64  MVVFAYSAALA---AELFPETWGERPVFSYFVIYVVGLVFVGALAYGGWGAESWLS 116


>gi|218157286|ref|YP_002364441.1| NADH dehydrogenase subunit 6 [Eudynamys taitensis]
 gi|166093095|gb|ABY82528.1| NADH dehydrogenase subunit 6 [Eudynamys taitensis]
          Length = 173

 Score = 43.1 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVVFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G  F+ ++A  +IV
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVLGYGVGFVLVVAMGMIV 104


>gi|90576908|gb|ABD95503.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata]
          Length = 172

 Score = 43.1 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|156142580|gb|ABU52055.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 43.1 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1   FLGLCFVLGGLAVASNPSPXYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           F++ + +        E     G +G  F   L   +    S  M
Sbjct: 61  FVYSVSLAA--EPYPEAWGSSGVVGYGFGMGLVVVVGFMMSGMM 102


>gi|156142512|gb|ABU52021.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142514|gb|ABU52022.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142516|gb|ABU52023.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142528|gb|ABU52029.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142544|gb|ABU52037.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142550|gb|ABU52040.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142552|gb|ABU52041.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142558|gb|ABU52044.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142560|gb|ABU52045.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142562|gb|ABU52046.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142586|gb|ABU52058.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 43.1 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 46/107 (42%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1   FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           F++ + +       A         G     ++A  L++  +   + S
Sbjct: 61  FVYSVSLAAEPYPEAWGNFGVVGYGFGMGLVVAVGLVMSGTTGALVS 107


>gi|19481544|gb|AAL88844.1|AF407111_1 NADH dehydrogenase subunit 6 [Estrilda astrild]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F++ + +        E     G +G  F   L   + +          +GE  
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVMVGLVIGGVFGVLVDGETV 117

Query: 123 RLV 125
             V
Sbjct: 118 NGV 120


>gi|19481550|gb|AAL88847.1|AF407114_1 NADH dehydrogenase subunit 6 [Amandava subflava]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G  F +G++    ++    F +   EG +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWADWGVVGYGFGMGLVVVIGLIVGGVFGLLVDEGTV 117


>gi|14141920|ref|NP_115375.1| NADH dehydrogenase subunit 6 [Anomalopteryx didiformis]
 gi|14039598|gb|AAK53332.1|AF338714_1 NADH dehydrogenase subunit VI [Anomalopteryx didiformis]
          Length = 173

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        I+ +  V +  +P Y V  L+   V   G  L LGA F++++  +VY+G
Sbjct: 2  TYFVLFLGVCFILGALAVASNPSPYYGVLGLVVGSVMGCGWLLSLGASFISLVLFLVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS 95
           ++V F++ + +       A    +    G+
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVWGFGA 92


>gi|309322034|ref|YP_003935021.1| NADH dehydrogenase subunit 6 [Candida salmanticensis]
 gi|308746511|gb|ADO51045.1| NADH dehydrogenase subunit 6 [Candida salmanticensis]
          Length = 201

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 11/129 (8%)

Query: 25  VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84
            +N +  +F+++  +V  +     +    + ++ +++YVGA+ V F+FII +L+I+    
Sbjct: 33  TKNIMLCIFNMLNIYVLISLYLYFINLSIIGLLYIMIYVGAITVLFVFIIALLNIEFIEK 92

Query: 85  EPR---------KKRGFLGSFFIGILAAELIV--CASNFMVFSAEGELSRLVFKGNNVEN 133
                               F I IL +  I      N  + +        +     + N
Sbjct: 93  SNNILINNSLLILTIILSLYFIINILISSDIYNNLYDNINILTLNDNFDFQITTLYILNN 152

Query: 134 IGKVLYTQY 142
           IG +LY++Y
Sbjct: 153 IGYILYSKY 161


>gi|27819341|ref|NP_777314.1| NADH dehydrogenase subunit 6 [Anser albifrons]
 gi|27764489|gb|AAO23052.1|AF363031_13 NADH dehydrogenase subunit 6 [Anser albifrons]
          Length = 173

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 43/103 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   +       +    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2   TYLMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +       F+ I+   L+ 
Sbjct: 62  GMLVVFVYSVALAAEPFPGAWGDWRVIGCAVAFVAIVFGGLVF 104


>gi|37596515|gb|AAQ95018.1| NADH dehydrogenase subunit 6 [Cryptospiza shelleyi]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596519|gb|AAQ95020.1| NADH dehydrogenase subunit 6 [Parmoptila jamesoni]
          Length = 160

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596537|gb|AAQ95029.1| NADH dehydrogenase subunit 6 [Neochmia phaeton phaeton]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|1171837|sp|P43195|NU6M_BRAMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394664|emb|CAA52128.1| NADH dehydrogenase subunit 6 [Brachyramphus marmoratus]
          Length = 173

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LGA FV+++  +VY+G
Sbjct: 2   TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGASFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G  FI +L   +++
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVIGYGMGFIVVLVVGVVI 104


>gi|156142530|gb|ABU52030.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 45/107 (42%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1   FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           F++ + +       A         G     ++A  L++      + S
Sbjct: 61  FVYSVSLAAEPYPEAWGNFGVVGYGFGMGLVVAVGLVMSGMTGALVS 107


>gi|37596547|gb|AAQ95034.1| NADH dehydrogenase subunit 6 [Taeniopygia bichenovii]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G  F +G++    ++      V + EG +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVMVGLIIGGVSGVLAGEGTV 117


>gi|32567793|ref|NP_075031.2| NADH dehydrogenase subunit 6 [Candida albicans SC5314]
 gi|74638326|sp|Q9B8D7|NU6M_CANAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|32567805|gb|AAG59588.2|AF285261_1 NADH dehydrogenase subunit 6 [Candida albicans SC5314]
          Length = 146

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S ++ I+S L + + +P+ S+ +LI  FV  A      G   + ++ ++VYVGA+ + FL
Sbjct: 2   SLISGIASILAIGLLSPVQSILALILLFVTVAINLYTSGYVLMGILYILVYVGAIAILFL 61

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
           FI+ +L+I+             G     ++   LI      + F     +  +    N +
Sbjct: 62  FILSLLNIE---------YKPTGGMHPLVIVLILIPLIPLDIAFEPIAIVESVSTTYNEL 112

Query: 132 ENIGKVLYTQY 142
             +G + Y++Y
Sbjct: 113 SIVGTLFYSEY 123


>gi|73672056|gb|AAZ80390.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672059|gb|AAZ80392.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672062|gb|AAZ80394.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672065|gb|AAZ80396.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672068|gb|AAZ80398.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672071|gb|AAZ80400.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672074|gb|AAZ80402.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672077|gb|AAZ80404.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672080|gb|AAZ80406.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672083|gb|AAZ80408.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672086|gb|AAZ80410.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319665|gb|ABA02995.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319669|gb|ABA02998.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319672|gb|ABA03000.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319675|gb|ABA03002.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319678|gb|ABA03004.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319681|gb|ABA03006.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319684|gb|ABA03008.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319687|gb|ABA03010.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319690|gb|ABA03012.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319693|gb|ABA03014.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319696|gb|ABA03016.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319698|gb|ABA03017.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
          Length = 172

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++ +  V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596427|gb|AAQ94974.1| NADH dehydrogenase subunit 6 [Lagonosticta virata]
          Length = 159

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V F++ + +        E     G +G  F   L   + +         AEG
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVMVGLVVGGVFGVLAEG 114


>gi|37596531|gb|AAQ95026.1| NADH dehydrogenase subunit 6 [Erythrura trichroa]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596535|gb|AAQ95028.1| NADH dehydrogenase subunit 6 [Neochmia ruficauda]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|19481548|gb|AAL88846.1|AF407113_1 NADH dehydrogenase subunit 6 [Ortygospiza atricollis]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596455|gb|AAQ94988.1| NADH dehydrogenase subunit 6 [Euschistospiza dybowskii]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596521|gb|AAQ95021.1| NADH dehydrogenase subunit 6 [Nesocharis shelleyi]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596433|gb|AAQ94977.1| NADH dehydrogenase subunit 6 [Lagonosticta rufopicta]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|238550360|gb|ACR44283.1| NADH dehydrogenase subunit 6 [Melampsora populnea f. sp. laricis]
          Length = 166

 Score = 42.7 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 34/165 (20%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+T  +P+ SV  LI  F+  A   +L    +++++ ++VYVGA+IV  LF+I+++++  
Sbjct: 2   VITSTSPVTSVVYLITVFLLVAAYLVLQNIVYLSLVLVIVYVGAIIVLILFVIIIINLQD 61

Query: 82  EVAE---PRKKRGFLGSFFIGIL-----------AAELIVCASNFMVFSAEGEL-----S 122
                  P   +G     FI I               +    +  +  S    L     +
Sbjct: 62  MRTTQNIPWSLQGIASLMFIVIFINIDVVHFHADFLSMFQYITLNLNISTNATLDGSSSN 121

Query: 123 RLVFKGNN---------------VENIGKVLYTQYAYPLEISGFI 152
            +V K  N               ++++G  LYT     + I+ F+
Sbjct: 122 WIVEKTTNMVFNPSDMNLFDLSQLQSLGLSLYTHSFIYIIIASFV 166


>gi|73672506|gb|AAZ80438.1| NADH dehydrogenase subunit 6 [Sitta pusilla]
 gi|73672509|gb|AAZ80440.1| NADH dehydrogenase subunit 6 [Sitta pusilla]
          Length = 168

 Score = 42.7 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          ++M+ + F       ++ +  V +  +P Y V  L+ A V   G  + LG  FV+++ ++
Sbjct: 3  IMMEFVLF--LGLCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVM 60

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
          VY+G ++V F++ + +       +    
Sbjct: 61 VYLGGMLVVFVYSVSLAADPYPESWGNL 88


>gi|119719991|ref|YP_920486.1| NADH-plastoquinone oxidoreductase subunit 6 [Thermofilum pendens
           Hrk 5]
 gi|119525111|gb|ABL78483.1| conserved hypothetical NADH-plastoquinone oxidoreductase subunit 6
           [Thermofilum pendens Hrk 5]
          Length = 161

 Score = 42.7 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   +A+ SS L V V+   Y+   L F  ++ A L  LLG  +VA+   +VYVGA ++F
Sbjct: 11  ISCAVAVASSLLAVKVKEDFYAAVLLGFVGLSVASLIALLGFTYVAVFHALVYVGATVLF 70

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102
            +  ++ +   +         G L S F G L 
Sbjct: 71  VIMGVIFIGRGLGYERRMLAAGVLTSVFAGSLF 103


>gi|296099624|gb|ADG95229.1| NADH dehydrogenase subunit 6 [Polypterus endlicherii]
          Length = 167

 Score = 42.7 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 52/112 (46%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +F  +FS + +IS   V +  +P ++ F L+ A     G+ +  G  F++MI  ++Y+G 
Sbjct: 2   VFMVIFSMIFLISLIAVASNPSPYFAAFGLMVAAGAGCGMLMQCGMTFLSMILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           ++V F +   +       A    +       ++ ++    +V   NF VF +
Sbjct: 62  MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVLLIVGMWVVFVGNFEVFDS 113


>gi|37596453|gb|AAQ94987.1| NADH dehydrogenase subunit 6 [Hypargos margaritatus]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|237880844|ref|YP_002907502.1| NADH dehydrogenase subunit 6 [Xenomystus nigri]
 gi|237648891|dbj|BAH58985.1| NADH dehydrogenase subunit 6 [Xenomystus nigri]
          Length = 173

 Score = 42.7 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F ++S   ++    V +   P Y+ F L+ A     GL +  G  F++++  ++Y+G +
Sbjct: 4   LFIVYSVGLMLGLVGVASNPAPYYAAFGLVLAAAAGCGLLVGSGGSFLSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +V F +   +     E+         + S+F+  +   + V A  +  + AE  LS
Sbjct: 64  MVVFAYSAALA---AELFPETWGERPVFSYFVIYVVGLVFVGALVYGGWGAESWLS 116


>gi|73672089|gb|AAZ80412.1| NADH dehydrogenase subunit 6 [Sitta pusilla]
          Length = 172

 Score = 42.7 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++ +  V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|224483640|gb|ACN51361.1| NADH dehydrogenase subunit 6 [Saxicola rubicola]
          Length = 172

 Score = 42.7 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F++ + +       A         G     ++   ++V   
Sbjct: 60  LGGMLVVFVYSVSLAAEPYPEAWGDWGVVGHGLGMCLVVMVGIMVGGG 107


>gi|156142546|gb|ABU52038.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142588|gb|ABU52059.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142590|gb|ABU52060.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 42.7 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 46/107 (42%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1   FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           F++ + +       A         G     ++A  L++  +   + S
Sbjct: 61  FVYSVSLAAEPYPEAWGNFGVVGYGFGMGLVVAVGLVMSGTAGALVS 107


>gi|255590111|ref|XP_002535174.1| conserved hypothetical protein [Ricinus communis]
 gi|223523830|gb|EEF27210.1| conserved hypothetical protein [Ricinus communis]
          Length = 55

 Score = 42.7 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 157 MIGAIVLMLRHRRD--IKRQDISKQLESNPDNSI 188
           MIGAIVL +       +KRQD+ ++   +   +I
Sbjct: 1   MIGAIVLTMHRTTHGAVKRQDLFRRNAIDFRRTI 34


>gi|5081425|gb|AAD39375.1|AF123895_1 NADH dehydrogenase subunit 6 [Balearica pavonina]
          Length = 173

 Score = 42.7 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V 
Sbjct: 7   FMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           F++ + +       A    +       FI +L   L+V
Sbjct: 67  FVYSVSLAADPYPEAWGDWRVMGYAVGFILVLGMGLVV 104


>gi|37596549|gb|AAQ95035.1| NADH dehydrogenase subunit 6 [Aidemosyne modesta]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|239997790|gb|ACS37282.1| NADH dehydrogenase subunit 6 [Columba livia]
          Length = 173

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 40/85 (47%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +   F  ++    V +  +P Y V  L+ A V   G  L LG  F++++  +VY+G
Sbjct: 2  TYFVFFLGFSFVLGGLGVASNPSPYYGVVGLVVASVTGCGWLLSLGVSFMSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWDDWR 86


>gi|326535894|ref|YP_004300341.1| NADH dehydrogenase subunit 6 [Emberiza chrysophrys]
 gi|325305644|gb|ADZ10809.1| NADH dehydrogenase subunit 6 [Emberiza chrysophrys]
          Length = 172

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          LF        +     V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G 
Sbjct: 3  LFVLFLGLCFVFGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVPFVSLVLVMVYLGG 62

Query: 66 VIVFFLFIIMM 76
          ++V F++ + +
Sbjct: 63 MLVVFVYSVSL 73


>gi|73672479|gb|AAZ80420.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672482|gb|AAZ80422.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672485|gb|AAZ80424.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672488|gb|AAZ80426.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672491|gb|AAZ80428.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672494|gb|AAZ80430.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672497|gb|AAZ80432.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672500|gb|AAZ80434.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672503|gb|AAZ80436.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672512|gb|AAZ80442.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672515|gb|AAZ80444.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672518|gb|AAZ80446.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672521|gb|AAZ80448.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672524|gb|AAZ80450.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672527|gb|AAZ80452.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|73672530|gb|AAZ80454.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319558|gb|ABA02924.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319561|gb|ABA02926.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319564|gb|ABA02928.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319567|gb|ABA02930.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319570|gb|ABA02932.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319573|gb|ABA02934.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319576|gb|ABA02936.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319579|gb|ABA02938.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319582|gb|ABA02940.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319585|gb|ABA02942.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319588|gb|ABA02944.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319591|gb|ABA02946.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319594|gb|ABA02948.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319597|gb|ABA02950.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319600|gb|ABA02952.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319603|gb|ABA02954.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319606|gb|ABA02956.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319609|gb|ABA02958.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319612|gb|ABA02960.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319615|gb|ABA02962.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319618|gb|ABA02964.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319621|gb|ABA02966.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319624|gb|ABA02968.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319627|gb|ABA02970.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319630|gb|ABA02972.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319633|gb|ABA02974.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319636|gb|ABA02976.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319639|gb|ABA02978.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319642|gb|ABA02980.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319645|gb|ABA02982.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319648|gb|ABA02984.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319651|gb|ABA02986.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319654|gb|ABA02988.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319657|gb|ABA02990.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319660|gb|ABA02992.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
 gi|74319663|gb|ABA02994.1| NADH dehydrogenase subunit 6 [Sitta pygmaea]
          Length = 168

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          ++M+ + F       ++ +  V +  +P Y V  L+ A V   G  + LG  FV+++ ++
Sbjct: 3  IMMEFVLF--LGLCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVM 60

Query: 61 VYVGAVIVFFLFIIMM 76
          VY+G ++V F++ + +
Sbjct: 61 VYLGGMLVVFVYSVSL 76


>gi|37596439|gb|AAQ94980.1| NADH dehydrogenase subunit 6 [Pytilia melba percivali]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|171187535|gb|ACB41371.1| NADH dehydrogenase subunit J [Mimulus guttatus]
          Length = 100

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 38  AFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97
            F N +GL L LG +F AMI  VV++GA+ V FLF++MM +I I        R    S  
Sbjct: 1   VFRNTSGLLLFLGLDFFAMIFSVVHIGAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGI 60

Query: 98  IG-ILAAELIVCASNFMVFSAEGELSRLVFKGN 129
           IG I   E+     N  +     + +    +  
Sbjct: 61  IGLIFWWEMFFILDNESIPLLPTQRNTTSLRYT 93


>gi|158508409|ref|YP_001527876.1| NADH dehydrogenase subunit 6 [Strongylocentrotus pallidus]
 gi|157056837|gb|ABV02426.1| NADH dehydrogenase subunit 6 [Strongylocentrotus droebachiensis]
 gi|158327691|emb|CAP12695.1| NADH dehydrogenase subunit 6 [Strongylocentrotus pallidus]
          Length = 165

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL   + +  S LV    +P YS   L+   V+   +   LG+ FVA++ L+VY+G ++V
Sbjct: 4   YLTLIVMLFGSTLVFYSLSPYYSALGLVVVSVSGCLILSFLGSSFVAIVLLLVYMGGMLV 63

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F +   +            +          ++    +  +  FM F    +LS   +  
Sbjct: 64  VFAYSSAISAERFPSVNNLGE----------VVGLSFLFSSWVFMSFDNFQDLSNTFYCF 113

Query: 129 NNVENI--GKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
            + E++      Y      + +  F+LL++++GA+++  
Sbjct: 114 VSGESLVGSSTFYNSGGVLVILGVFVLLIALVGALIISR 152


>gi|325126731|ref|YP_004285878.1| NADH dehydrogenase subunit 6 [Sturnus tristis]
 gi|324022947|gb|ADY15514.1| NADH dehydrogenase subunit 6 [Sturnus tristis]
          Length = 172

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       I+    V +  +P Y V  L+ A V   G  + LG  FV ++ ++VY
Sbjct: 2  MEFVLF--LGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVGLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596417|gb|AAQ94969.1| NADH dehydrogenase subunit 6 [Lagonosticta rara]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|224504008|gb|ACN53591.1| NADH dehydrogenase subunit 6 [Balearica pavonina]
          Length = 173

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V 
Sbjct: 7   FMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           F++ + +       A    +       FI +L   L+V
Sbjct: 67  FVYSVSLAADPYPEAWGDWRVMGYAVGFILVLGMGLVV 104


>gi|301353270|ref|YP_003795347.1| NADH dehydrogenase subunit 6 [Pseudopodoces humilis]
 gi|301016353|gb|ADK47637.1| NADH dehydrogenase subunit 6 [Pseudopodoces humilis]
          Length = 172

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ + F       I+    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MQFVLF--LGVCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F++ + +       A         G     ++   ++V   
Sbjct: 60  LGGMLVVFVYSVSLAAEPYPEAWGDWGVVGHGLGMCLVVMVGIMVGGG 107


>gi|156142566|gb|ABU52048.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVAEPR 87
          F++ + +       A   
Sbjct: 61 FVYSVSLAAEPYPEAWGN 78


>gi|37596457|gb|AAQ94989.1| NADH dehydrogenase subunit 6 [Uraeginthus ianthinogaster]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVMF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           +G ++V F++ + +        E     G +G  F   L   +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVMI 100


>gi|19481552|gb|AAL88848.1|AF407115_1 NADH dehydrogenase subunit 6 [Lagonosticta sanguinodorsalis]
 gi|37596425|gb|AAQ94973.1| NADH dehydrogenase subunit 6 [Lagonosticta rhodopareia jamesoni]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|238550366|gb|ACR44286.1| NADH dehydrogenase subunit 6 [Melampsora abietis-canadensis]
 gi|238550368|gb|ACR44287.1| NADH dehydrogenase subunit 6 [Melampsora abietis-canadensis]
 gi|238550370|gb|ACR44288.1| NADH dehydrogenase subunit 6 [Melampsora medusae f. sp.
           tremuloidis]
 gi|238550372|gb|ACR44289.1| NADH dehydrogenase subunit 6 [Melampsora medusae f. sp.
           tremuloidis]
 gi|238550374|gb|ACR44290.1| NADH dehydrogenase subunit 6 [Melampsora medusae f. sp.
           tremuloidis]
 gi|238550376|gb|ACR44291.1| NADH dehydrogenase subunit 6 [Melampsora medusae f. sp.
           tremuloidis]
 gi|238550384|gb|ACR44295.1| NADH dehydrogenase subunit 6 [Melampsora populnea f. sp.
           pinitorqua]
 gi|238550386|gb|ACR44296.1| NADH dehydrogenase subunit 6 [Melampsora populnea f. sp.
           pinitorqua]
 gi|238550388|gb|ACR44297.1| NADH dehydrogenase subunit 6 [Melampsora populnea f. sp.
           pinitorqua]
          Length = 166

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 34/165 (20%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD--- 78
           V+T  +P+ SV  LI  F+  A   +L    +++++ ++VYVGA+IV  LF+I++++   
Sbjct: 2   VITSTSPVTSVVYLITVFLLVAAYLVLQNIVYLSLVLVIVYVGAIIVLILFVIIIINLQD 61

Query: 79  IDIEVAEPRKKRGFLGSFFIGIL-----------AAELIVCASNFMVFSAEGEL-----S 122
           I      P   +G     FI I               +    +  +  S    L     +
Sbjct: 62  IRTTQNIPWSLQGIASLMFIVIFINIDVVHFHADFLSMFQYITLNLNISTNATLDGSSSN 121

Query: 123 RLVFKGNN---------------VENIGKVLYTQYAYPLEISGFI 152
            +V K  N               ++++G  LYT     + I+ F+
Sbjct: 122 WIVEKTTNMVFNPSDMNLFDLSQLQSLGLSLYTHSFIYIIIASFV 166


>gi|19481558|gb|AAL88851.1|AF407118_1 NADH dehydrogenase subunit 6 [Quelea quelea]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F++ + +       A         G     ++   LIV
Sbjct: 60  LGGMLVVFVYSVSLAADPYPEAWTDWGVVGYGFGLGLVVMIGLIV 104


>gi|37596539|gb|AAQ95030.1| NADH dehydrogenase subunit 6 [Stagonopleura guttata]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|238550362|gb|ACR44284.1| NADH dehydrogenase subunit 6 [Melampsora aecidioides]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V+T  +P+ SV  LI  F+  A   +L    +++++ ++VYVGA+IV  LF+I+++++  
Sbjct: 2   VITSTSPVTSVVYLITVFLLVAAYLVLQNIVYLSLVLVIVYVGAIIVLILFVIIIINLQD 61

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
                       G   I  L   +I    + + F A+
Sbjct: 62  IRTTQNIPWSLQG---IASLMFIVIFINIDVVHFHAD 95


>gi|37596441|gb|AAQ94981.1| NADH dehydrogenase subunit 6 [Pytilia melba grotei]
          Length = 159

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|2660572|emb|CAA71362.1| NADH deyhdrogenase subunit 6 [Ficedula albicollis]
 gi|2660578|emb|CAA71363.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata]
 gi|13508732|emb|CAC35109.1| NADH dehydrogenase subunit 6 [Ficedula albicollis]
 gi|13508735|emb|CAC35117.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata]
 gi|13508738|emb|CAC35119.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata]
 gi|13508741|emb|CAC35121.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
 gi|14268380|emb|CAC39331.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata]
 gi|14268382|emb|CAC39349.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
 gi|14268384|emb|CAC39350.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
 gi|14268386|emb|CAC39351.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
 gi|14268388|emb|CAC39352.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
 gi|14268390|emb|CAC39353.1| NADH dehydrogenase subunit 6 [Ficedula speculigera]
          Length = 172

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          MQ + F       ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2  MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84
          +G ++V F++ + +       A
Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81


>gi|37596527|gb|AAQ95024.1| NADH dehydrogenase subunit 6 [Amandava amandava]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596503|gb|AAQ95012.1| NADH dehydrogenase subunit 6 [Pyrenestes ostrinus]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|156142564|gb|ABU52047.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 42.3 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVAEPR 87
          F++ + +       A   
Sbjct: 61 FVYSVSLAAEPYPEAWGN 78


>gi|37596421|gb|AAQ94971.1| NADH dehydrogenase subunit 6 [Lagonosticta rubricata congica]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596493|gb|AAQ95007.1| NADH dehydrogenase subunit 6 [Euschistospiza cinereovinacea
          cinereovinacea]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596513|gb|AAQ95017.1| NADH dehydrogenase subunit 6 [Mandingoa nitidula nitidula]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596443|gb|AAQ94982.1| NADH dehydrogenase subunit 6 [Pytilia melba citerior]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|156142548|gb|ABU52039.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 42.3 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 1/113 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1   FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           F++ + +       A         G F +G++ A  +V +       +EG ++
Sbjct: 61  FVYSVSLAAEPYPEAWGNFGVVGYG-FGMGLVVAVGLVMSGTVGALVSEGTVN 112


>gi|37596435|gb|AAQ94978.1| NADH dehydrogenase subunit 6 [Lagonosticta nitidula]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|19481564|gb|AAL88854.1|AF407121_1 NADH dehydrogenase subunit 6 [Bubalornis albirostris]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGVCFVLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596555|gb|AAQ95038.1| NADH dehydrogenase subunit 6 [Lonchura griseicapilla]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGVCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVCLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F++ + +        E     G +G  F   L   + +   
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVIVIGLLIG 105


>gi|237869153|ref|YP_002907489.1| NADH dehydrogenase subunit 6 [Papyrocranus congoensis]
 gi|237648877|dbj|BAH58972.1| NADH dehydrogenase subunit 6 [Papyrocranus congoensis]
          Length = 173

 Score = 42.3 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F L     ++    V +   P Y+   L+ +     G+ +  G  F++++  ++Y+G +
Sbjct: 4   LFILCLVGMVLGLVAVASNPAPYYAALGLVLSAAAGCGVLIGCGGSFLSLVLFLIYLGGM 63

Query: 67  IVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           +V F +   +  ++  E    R   G+   + IG++   +++C   ++
Sbjct: 64  MVVFAYSAALAAELFPETWGERSVFGYFMVYVIGLVFIGVLICNGWYL 111


>gi|37596431|gb|AAQ94976.1| NADH dehydrogenase subunit 6 [Lagonosticta senegala rhodopsis]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|156142592|gb|ABU52061.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142594|gb|ABU52062.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142596|gb|ABU52063.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVAEPR 87
          F++ + +       A   
Sbjct: 61 FVYSVSLAAEPYPEAWGN 78


>gi|19481588|gb|AAL88866.1|AF407133_1 NADH dehydrogenase subunit 6 [Molothrus bonariensis]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGMCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|156142518|gb|ABU52024.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142520|gb|ABU52025.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVAEPR 87
          F++ + +       A   
Sbjct: 61 FVYSVSLAAEPYPEAWGN 78


>gi|19481554|gb|AAL88849.1|AF407116_1 NADH dehydrogenase subunit 6 [Erythrura gouldiae]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|325126815|ref|YP_004285956.1| NADH dehydrogenase subunit 6 [Bycanistes brevis]
 gi|304365529|gb|ADM26337.1| NADH dehydrogenase subunit 6 [Bycanistes brevis]
          Length = 173

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +      I+    V +  +P Y V  L+   V   G  L LGA F+A++  +VY+G +
Sbjct: 4  FVFFLGLAFILGGLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGASFIALVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97
          +V F++ + +       A    +    G+ F
Sbjct: 64 LVVFVYSVALAADPFPEAWGSWRVLGYGAGF 94


>gi|37596559|gb|AAQ95040.1| NADH dehydrogenase subunit 6 [Lonchura castaneothorax]
          Length = 158

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596423|gb|AAQ94972.1| NADH dehydrogenase subunit 6 [Lagonosticta rubricata rubricata]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|158508423|ref|YP_001527863.1| NADH dehydrogenase subunit 6 [Strongylocentrotus droebachiensis]
 gi|158327677|emb|CAP12682.1| NADH dehydrogenase subunit 6 [Strongylocentrotus droebachiensis]
          Length = 165

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 12/159 (7%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL   + +  S LV    +P YS   L+   V+   +   LG+ FVA++ L+VY+G ++V
Sbjct: 4   YLTLIVMLFGSTLVFYSLSPYYSALGLVVVSVSGCLVLSFLGSSFVAIVLLLVYMGGMLV 63

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F +   +            +          ++    +  +  FM F    +LS      
Sbjct: 64  VFAYSSAISAERFPSVNNLGE----------VVGLSFLFSSWVFMSFDNFQDLSNTFHCF 113

Query: 129 NNVENI--GKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
            + E++      Y      + +  F+LL++++GA+++  
Sbjct: 114 ISGESLVGSSTFYNSGGVLVILGVFVLLIALVGALIISR 152


>gi|268324508|emb|CBH38096.1| F420H2-quinone oxidoreductase, subunit J [uncultured archaeon]
          Length = 160

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M+       + +A++SS  V+  R+  YS   +    +  A ++ +   + V ++ + 
Sbjct: 1   MSMEVWVLIALAGIAVLSSLGVLLSRDNFYSSLYMSATLIFVASIYAIFNLQPVFVLIVF 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           V+VGA+ +     + +       ++P  +   L +  + I AA +     ++ + +  
Sbjct: 61  VFVGAIGI-----VTVAVAATYRSDPESQFSKLWAVPVLITAAVVGFAIYSYNLLNPN 113


>gi|208969329|ref|YP_002267968.1| NADH dehydrogenase subunit 6 [Scarus rubroviolaceus]
 gi|207081498|gb|ACI23043.1| NADH dehydrogenase subunit 6 [Scarus rubroviolaceus]
          Length = 173

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S    LF+   ++    V +  +P Y+  +L+       GL    G  F+A++  ++Y+G
Sbjct: 2   SFLVILFTVGMVLGLIGVASNPSPYYAALALVVVAWAGCGLLTSYGGSFLALVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGELS 122
            ++V F +   +       A  R   G     +   +    +     +     +++G   
Sbjct: 62  GMLVVFAYSSALAAEIYPEAWLRAGPGVAMYLYTFAVVGATLTYLYYWEGGDLASDGVAD 121

Query: 123 RLVFKGNNVENIG 135
                  +VE + 
Sbjct: 122 WFSPFAGDVEGVA 134


>gi|1171836|sp|P43194|NU6M_BRABR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394662|emb|CAA52127.1| NADH dehydrogenase subunit 6 [Brachyramphus brevirostris]
          Length = 173

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 39/80 (48%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G FL LGA FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWFLSLGASFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVA 84
           ++V F++ + +       A
Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81


>gi|108793334|ref|YP_637164.1| NADH dehydrogenase subunit 6 [Pelobates cultripes]
 gi|88683170|emb|CAI38769.1| NADH dehydrogenase subunit 6 [Pelobates cultripes]
          Length = 169

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 41/100 (41%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
           F  + ++    V +  +P ++   L+        + +  GA F++++  +VY+G ++V F
Sbjct: 8   FFILMVLGLVAVASNPSPYFAALGLVMVSAAGCWVIISAGASFLSLVLFLVYLGGMMVVF 67

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            +   +       A      G+    ++G+L     +   
Sbjct: 68  AYSAALTAEPYPEAWGNWAVGWYILVYLGLLWLVSYLVGG 107


>gi|116734736|ref|YP_842372.1| NADH dehydrogenase subunit 6 [Dryocopus pileatus]
 gi|109676628|gb|ABG37719.1| NADH dehydrogenase subunit 6 [Dryocopus pileatus]
          Length = 173

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        I+    V +  +P Y V  L+ A V   G  L +G  FVA++  +VY+G
Sbjct: 2   TYFMLFLGVCFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSVGVSFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            ++V F++ + +            +    G   +G L    +V    
Sbjct: 62  GMLVVFVYSVALAADPFPETWGDWRVLGYGVGLVGTLLMGAVVGGVG 108


>gi|37596489|gb|AAQ95005.1| NADH dehydrogenase subunit 6 [Euplectes hordeaceus]
          Length = 159

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y    L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGVCFVLGGLAVASNPSPYYGAAGLVVAAIAGGGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +  D   E        G+     + I+   ++V     +V S   + 
Sbjct: 60  LGGMLVVFVYSVSLAADPYPETWTDWGVVGYGFGLGLVIMVGLVVVGLPGQLVGSGTADS 119

Query: 122 SRLV 125
             L+
Sbjct: 120 GGLL 123


>gi|310007459|gb|ADP00771.1| NADH dehydrogenase subunit 6 [Morone chrysops]
          Length = 172

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  +  F+L  F  ++S   V    +P Y  F L+        + + LG  F+A+I ++
Sbjct: 1   MMTYAACFFLVGF--VLSMVAVACNPSPFYGSFGLVAVAGFGCAVVVGLGGTFLALILVM 58

Query: 61  VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-MVFSAE 118
           +YVGA++V F++   +  D   E        G  G + +G+LAA        + +++   
Sbjct: 59  IYVGAMLVVFVYSAALAADRYPESWGSGGVAGQAGGYLLGLLAAFSFFWKEEYGVLWGPV 118

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155
           G +     +  ++  +  +  +  A  +  +G +LL 
Sbjct: 119 GSVEGWASQRGDISGVSWMYSSGGALLVISAGALLLT 155


>gi|291612287|ref|YP_003540720.1| NADH dehydrogenase subunit 6 [Columba livia]
 gi|290775870|gb|ADD62365.1| NADH dehydrogenase subunit 6 [Columba livia]
          Length = 173

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 40/85 (47%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +   F  ++    + +  +P Y V  L+ A V   G  L LG  F++++  +VY+G
Sbjct: 2  TYFVFFLGFSFVLGGLGMASNPSPYYGVVGLVVASVTGCGWLLSLGVSFMSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWDDWR 86


>gi|156142510|gb|ABU52020.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142522|gb|ABU52026.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 41.9 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1   FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           F++ + +        E     G +G  F   L   + +  S  M
Sbjct: 61  FVYSVSLAA--EPYPEAWGSSGVVGYSFGMGLVVVVGLMMSGMM 102


>gi|37596565|gb|AAQ95043.1| NADH dehydrogenase subunit 6 [Lemuresthes nana]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGVCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596509|gb|AAQ95015.1| NADH dehydrogenase subunit 6 [Estrilda caerulescens]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596495|gb|AAQ95008.1| NADH dehydrogenase subunit 6 [Uraeginthus cyanocephalus]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596499|gb|AAQ95010.1| NADH dehydrogenase subunit 6 [Uraeginthus bengalus]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596429|gb|AAQ94975.1| NADH dehydrogenase subunit 6 [Lagonosticta senegala rendalli]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|15805906|ref|NP_294604.1| NADH-ubiquinone/plastoquinone subunit [Deinococcus radiodurans R1]
 gi|6458595|gb|AAF10453.1|AE001941_6 NADH-ubiquinone/plastoquinone subunit, putative [Deinococcus
           radiodurans R1]
          Length = 814

 Score = 41.9 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 1/118 (0%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
            + + +  +  V+   N + +V         +A  FL L A  +A+  L+V    V + F
Sbjct: 602 IAVLLVGGAVGVLLSNNRLTAVIVTGLTGFGSAAAFLALRAPDLALTQLLVEAVTV-ILF 660

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
           L     L    ++   R +    G   +       ++  S+    +       LV   
Sbjct: 661 LLAFRYLPGARDLPRARGRLVLDGLLAVAAGVGVTLLVLSSLRFLATPISPWYLVNSY 718


>gi|37596497|gb|AAQ95009.1| NADH dehydrogenase subunit 6 [Uraeginthus angolensis]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|37596419|gb|AAQ94970.1| NADH dehydrogenase subunit 6 [Lagonosticta larvata nigricollis]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|224483634|gb|ACN51358.1| NADH dehydrogenase subunit 6 [Saxicola torquata axillaris]
 gi|224483636|gb|ACN51359.1| NADH dehydrogenase subunit 6 [Saxicola torquata axillaris]
          Length = 172

 Score = 41.9 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           MQ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F++ + +       A         G     ++    +V   
Sbjct: 60  LGGMLVVFVYSVSLAAEPYPEAWGDWGVVGRGLGMCLVVMVGFMVGGG 107


>gi|37596463|gb|AAQ94992.1| NADH dehydrogenase subunit 6 [Estrilda troglodytes]
 gi|37596465|gb|AAQ94993.1| NADH dehydrogenase subunit 6 [Estrilda melpoda]
 gi|37596467|gb|AAQ94994.1| NADH dehydrogenase subunit 6 [Estrilda rhodopyga]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|148922668|ref|YP_001293747.1| NADH dehydrogenase subunit 6 [Etrumeus teres]
 gi|148762616|dbj|BAF64060.1| NADH dehydrogenase subunit 6 [Etrumeus teres]
          Length = 175

 Score = 41.9 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 1/116 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MVM+ +       + ++S   V +   P Y   +L+ A  +   L  + GA F++++  +
Sbjct: 1   MVMELMIITWL-VVLVLSIIGVSSNPAPFYGALALVIAAGSGGVLLAVFGAPFLSLVFFL 59

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           +Y+G ++V F +   +                   FF+G+ A  ++    ++  F 
Sbjct: 60  IYLGGMLVVFGYATALAADSDPETLADDTAFEFVVFFVGLAAVGVMWFWGSWYEFG 115


>gi|37596461|gb|AAQ94991.1| NADH dehydrogenase subunit 6 [Estrilda paludicola]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|326535908|ref|YP_004300354.1| NADH dehydrogenase subunit 6 [Emberiza tristrami]
 gi|325305658|gb|ADZ10822.1| NADH dehydrogenase subunit 6 [Emberiza tristrami]
          Length = 172

 Score = 41.9 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          LF        ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G 
Sbjct: 3  LFVLFLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGG 62

Query: 66 VIVFFLFIIMMLDIDIEVAEPRK 88
          ++V F++ + +       A    
Sbjct: 63 MLVVFVYSVSLAADPYPEAWDSW 85


>gi|37596561|gb|AAQ95041.1| NADH dehydrogenase subunit 6 [Lonchura cantans]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|19481584|gb|AAL88864.1|AF407131_1 NADH dehydrogenase subunit 6 [Fringilla coelebs]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--MGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           +G ++V F++ + +        E     G +G  F   L   + + A   +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWASWGVVGYGFGLGLVVLVGIVAGGML 108


>gi|37596505|gb|AAQ95013.1| NADH dehydrogenase subunit 6 [Estrilda nonnula]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|49257002|dbj|BAD24801.1| NADH dehydrogenase subunit 6 [Varanus komodoensis]
          Length = 176

 Score = 41.9 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y      I+S  +V +  +P+Y V SL+F    A G+ ++ G  F++++  +VY+G +IV
Sbjct: 6   YAMLGGLIVSGLMVSSNPSPLYGVVSLVFLAFLACGVLVVCGYSFLSLVLFLVYLGGMIV 65

Query: 69  FFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
            F + + M          +      FLG      +   +I+     +++
Sbjct: 66  VFAYSVAMASELRPEAWLDWSVLPRFLGGLIGIFVVMGMILGGDVGVLY 114


>gi|13508744|emb|CAC35115.1| NADH dehydrogenase subunit 6 [Ficedula parva]
 gi|14268392|emb|CAC39330.1| NADH dehydrogenase subunit 6 [Ficedula parva]
          Length = 172

 Score = 41.9 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          MQ + F       I+    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2  MQFVLF--LGVCFILGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84
          +G ++V F++ + +       A
Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81


>gi|301353491|ref|YP_003795711.1| NADH dehydrogenase subunit 6 [Morone saxatilis]
 gi|300069619|gb|ADJ66721.1| NADH dehydrogenase subunit 6 [Morone saxatilis]
          Length = 172

 Score = 41.9 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  +  F+L  F  ++S   V    +P Y  F L+        + + LG  F+A+I ++
Sbjct: 1   MMTYAACFFLVGF--VLSMVAVACNPSPFYGSFGLVAVAGFGCAVVVGLGGTFLALILVM 58

Query: 61  VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-MVFSAE 118
           +YVGA++V F++   +  D   E        G  G + +G++AA        + +++   
Sbjct: 59  IYVGAMLVVFVYSAALAADRYPESWGSGGVAGQAGGYLLGLMAAFSFFWKEEYGVLWGPV 118

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155
           G +     +  ++  +  +  +  A  +  +G +LL 
Sbjct: 119 GSVEEWASQRGDISGVSWMYSSGGALLVISAGALLLT 155


>gi|37596507|gb|AAQ95014.1| NADH dehydrogenase subunit 6 [Estrilda atricapilla]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|16797923|gb|AAL29214.1| NADH dehydrogenase subunit 6 [Tringa glareola]
          Length = 173

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 40/85 (47%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +L     ++    V +  +P Y V  L+ A +   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVFLLGLCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLLSLGISFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|156142576|gb|ABU52053.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142578|gb|ABU52054.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142598|gb|ABU52064.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVAEPR 87
          F++ + +       A   
Sbjct: 61 FVYSVSLAAEPYPEAWGN 78


>gi|46358646|ref|YP_006421.1| NADH dehydrogenase subunit 6 [Eudromia elegans]
 gi|46310029|gb|AAS87297.1| NADH dehydrogenase subunit VI [Eudromia elegans]
          Length = 173

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 46/103 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      ++ +  V    +P Y V  L+   V   G  + LG  FV+++  +VY+G
Sbjct: 2   TYFVFFLGVGLVMGALAVACNPSPYYGVLGLVLGSVMGCGWLVSLGVSFVSLVLFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G  F+ I+   +++
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVQYGVGFMMIVLVGVVL 104


>gi|126792914|gb|ABO27313.1| NADH dehydrogenase subunit 6 [Bolborhynchus lineola]
          Length = 171

 Score = 41.9 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     ++++ LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G
Sbjct: 2   AYFVLLLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            ++V F++ + +            +        + +L     V    
Sbjct: 62  GMLVVFVYSVSLAADPFPQVWGGWRVVGYALGLVCVLGVGWAVWGWG 108


>gi|322422363|ref|YP_004221795.1| NADH dehydrogenase subunit 6 [Luscinia calliope]
 gi|316891673|gb|ADU57283.1| NADH dehydrogenase subunit 6 [Luscinia calliope]
          Length = 172

 Score = 41.9 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          MQ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84
          +G ++V F++ + +       A
Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81


>gi|19481542|gb|AAL88843.1|AF407110_1 NADH dehydrogenase subunit 6 [Hypargos niveoguttatus]
          Length = 159

 Score = 41.9 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V F++ + +        E     G +G  F   L   + +    
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVVIGLVIGG 106


>gi|1171849|sp|P43205|NU6M_SYNHY RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394686|emb|CAA52126.1| NADH dehydrogenase subunit 6 [Synthliboramphus hypoleucus]
          Length = 173

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMLFLGLCFVLGGLGVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
           ++V F++ + +       A    +    G  FI 
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFIA 96


>gi|84488830|ref|YP_448776.1| NADH dehydrogenase subunit 6 [Phanogenia gracilis]
 gi|66731081|gb|AAY51834.1| NADH dehydrogenase subunit 6 [Phanogenia gracilis]
          Length = 163

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 66/152 (43%), Gaps = 9/152 (5%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y+   + ++ + LV    +P +S   L+   +++  + L  G  F+A+I L+VY+G +++
Sbjct: 4   YISIILTLLGTSLVFYSLSPYFSALGLVIVSISSCLILLQTGMNFLALIILLVYMGGMLI 63

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F++   +            +   + +  + IL   +I+  +N         +S  +   
Sbjct: 64  VFIYSSALSAERFPTISNINE---IITLCLFILFWNIILFENNNWNSVNNTNISNSISIE 120

Query: 129 NNVENIGKVLYTQYAYPLEI-SGFILLLSMIG 159
                    L++       + +G+ILL+S+I 
Sbjct: 121 G-----ASYLFSPTMIWFFLFAGYILLISLIA 147


>gi|224483638|gb|ACN51360.1| NADH dehydrogenase subunit 6 [Saxicola rubicola]
          Length = 172

 Score = 41.9 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F        ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +V F++ + +       A         G     ++   ++V   
Sbjct: 64  LVVFVYSVSLAAEPYPEAWGDWGVVGHGLGMCLVVMVGIMVGGG 107


>gi|156142524|gb|ABU52027.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 41.6 bits (97), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVAEPR 87
          F++ + +       A   
Sbjct: 61 FVYSVSLAAEPYPEAWSN 78


>gi|326535950|ref|YP_004300393.1| NADH dehydrogenase subunit 6 [Sturnus cineraceus]
 gi|325305686|gb|ADZ10848.1| NADH dehydrogenase subunit 6 [Sturnus cineraceus]
          Length = 172

 Score = 41.6 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F  F F  I+    V +  +P Y V  L+ A V   G  + L   FV ++ ++VY
Sbjct: 2  MEFVLFLGFCF--ILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLEVSFVGLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|21449944|ref|NP_659361.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|21425436|emb|CAD21743.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|150372681|dbj|BAF66143.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|290544739|gb|ADD37191.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
          Length = 175

 Score = 41.6 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + F ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+VC
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLVC 105


>gi|238550563|gb|ACR44416.1| NADH dehydrogenase subunit 6 [Alectoris chukar]
          Length = 173

 Score = 41.6 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F         +    V +  +P Y V  L+ A V   G  + LG  F++++  ++Y+G
Sbjct: 2   TYFVIFLGVSFALGVLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFLSLVLFMIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
            ++V F++ + +       A    +   +G     +L   + V    F+ F
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGNWR--VVGYGLGFVLVVFMGVVLGGFVDF 110


>gi|37886710|gb|AAR04680.1| NADH dehydrogenase subunit 6 [Coragyps atratus]
          Length = 170

 Score = 41.6 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
            ++V F++ + +       A   ++    G   I +LA  +
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDRRVVGYGVGLILVLAVGV 102


>gi|37596459|gb|AAQ94990.1| NADH dehydrogenase subunit 6 [Uraeginthus granatina]
          Length = 159

 Score = 41.6 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           +G ++V F++ + +        E     G +G  F   L   +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVMI 100


>gi|116734813|ref|YP_842411.1| NADH dehydrogenase subunit 6 [Pteroglossus azara flavirostris]
 gi|109676670|gb|ABG37758.1| NADH dehydrogenase subunit 6 [Pteroglossus azara flavirostris]
          Length = 173

 Score = 41.6 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+FA V   G  + LG  FV ++  +VY+G
Sbjct: 2  AYFLLFLGVCFVLGGLAVASNPSPYYGVMGLVFASVVGCGWLVSLGMSFVGLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|238550619|gb|ACR44468.1| NADH dehydrogenase subunit 6 [Phasianus colchicus]
 gi|332347422|gb|AEE60519.1| NADH dehydrogenase subunit 6 [Phasianus colchicus]
          Length = 173

 Score = 41.6 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 45/105 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  F++++  +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVLGLVLASVVGCGWLVSLGVSFISLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++V F++ + +       A    +    G  F+ ++   + +  
Sbjct: 62  GMLVVFVYSVSLAADPYPQAWGDWRVVGYGLGFVLVVCVGVFLAG 106


>gi|16357260|ref|NP_443357.1| NADH dehydrogenase subunit 6 [Coelorinchus kishinouyei]
 gi|16267015|dbj|BAB70168.1| NADH dehydrogenase subunit 6 [Coelorinchus kishinouyei]
          Length = 173

 Score = 41.6 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 9/137 (6%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++ +  + +  +P+Y+V  L+     A  + +  G  F++++  +VY+G ++V F   + 
Sbjct: 13  VLGAAALASNPSPVYAVLGLVLMAGMACMILINSGGPFLSLLFFLVYLGGMLVVFAHCVA 72

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV---- 131
           +       A       FLG+    ++   + V       F    E        + +    
Sbjct: 73  LAAERYPKAWGDV--IFLGALVGVVVGYSVAVIVGWVNWFGVGSESGYDFDDYSFICPEG 130

Query: 132 ENIGKVLYTQ--YAYPL 146
           E +G +LY +  +    
Sbjct: 131 EGLG-LLYDKGGWLLLF 146


>gi|221143482|ref|YP_002519496.1| NADH dehydrogenase subunit 6 [Scarus forsteni]
 gi|220961584|gb|ACL93255.1| NADH dehydrogenase subunit 6 [Scarus forsteni]
          Length = 173

 Score = 41.6 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 2/133 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S    LF+   ++    V +  +P Y+  +L+       GL    G  F+A++  ++Y+G
Sbjct: 2   SFLVILFTVGMVLGLIGVASNPSPYYAALALVVVAWAGCGLLTSYGGSFLALVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGELS 122
            ++V F +   +       A  R   G     +   +    +     +     + +G + 
Sbjct: 62  GMLVVFAYSSALAAEIYPEAWLRAGPGVAMYLYTFAVVGATLTYLYYWEGGDLALDGVVD 121

Query: 123 RLVFKGNNVENIG 135
            L     +VE + 
Sbjct: 122 WLSPFAGDVEGVA 134


>gi|221145448|ref|YP_002519662.1| NADH dehydrogenase subunit 6 [Scarus schlegeli]
 gi|219560077|gb|ACL27241.1| NADH dehydrogenase subunit 6 [Scarus schlegeli]
          Length = 173

 Score = 41.6 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 2/133 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S    LF+   ++    V +  +P ++  +L+       GL    G  F+A++  ++Y+G
Sbjct: 2   SFLVVLFTIGLVLGLIGVASNPSPYFAALALVVVAWAGCGLLTSYGGSFLALVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGELS 122
            ++V F +   +       A  R   G     +   +    +V   N+     + +G + 
Sbjct: 62  GMLVVFAYSSALAAEIYPEAWLRAGPGVAMYLYTSAVLVATVVYLYNWEGGDLALDGVVD 121

Query: 123 RLVFKGNNVENIG 135
           RL     +VE + 
Sbjct: 122 RLSPLAGDVEGVA 134


>gi|288903402|ref|YP_003434125.1| NADH dehydrogenase subunit 6 [Candida maltosa]
 gi|162401915|gb|ABX10007.1| NADH dehydrogenase subunit 6 [Candida maltosa]
          Length = 147

 Score = 41.6 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           S ++ +S+ L V + +P+ S+ ++I  FV+ A      G   + ++ ++VYVGA+ + FL
Sbjct: 2   SIISGLSAILAVGLLSPVQSIVAMIILFVSVAITLYNTGFTLLGILYVLVYVGAIALLFL 61

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
           FI+ +L+I    A               ++   L+VC   F +FS    +  +V      
Sbjct: 62  FILSLLNIQYTAAGGMNP----------LIIFLLLVCLVPFEIFSEPLGVVEIVQNNATE 111

Query: 132 E--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
           E   +G + YT+Y   L + G IL+LS+IGAI +  
Sbjct: 112 ELLTVGSLFYTEYGIILLLIGVILILSVIGAICITR 147


>gi|11643337|gb|AAG39529.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 41.6 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 37/70 (52%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F    S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4  FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|302348177|ref|YP_003815815.1| NADH-quinone oxidoreductase subunit J [Acidilobus saccharovorans
           345-15]
 gi|302328589|gb|ADL18784.1| NADH-quinone oxidoreductase subunit J [Acidilobus saccharovorans
           345-15]
          Length = 165

 Score = 41.6 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S MAI S+ LVV +++ +Y+  +L       A L  + G   V+   ++VYVGA ++F
Sbjct: 14  VLSIMAIASAMLVVRLKDLVYASITLAILGSFTAALLAVAGFGLVSAYLVLVYVGAAVMF 73

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            +  I M+    + +     RG   +  +      ++V +  + +F+   
Sbjct: 74  IVISISMIGPQGQESFDSF-RGLTVAAALATFIITVVVISELYRLFTVPP 122


>gi|19481580|gb|AAL88862.1|AF407129_1 NADH dehydrogenase subunit 6 [Carduelis pinus]
          Length = 159

 Score = 41.6 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G  F +G++    +V      + + EG +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVSWGVVGYGFGMGLVVLVGLVMGGMLGLLAEEGTV 117

Query: 122 S 122
           +
Sbjct: 118 N 118


>gi|126792908|gb|ABO27310.1| NADH dehydrogenase subunit 6 [Nannopsittaca dachilleae]
          Length = 171

 Score = 41.6 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++++ LV +  +P Y V  L+F  V   G F+ LGA F++++  +VY+G
Sbjct: 2   AYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            ++V F++ + +               + G   +G +   ++  +   +V+   GE 
Sbjct: 62  GMLVVFVYSVSLAADPFPQV-------WXGWRVVGYILGLVLALSVGCVVWGWGGEF 111


>gi|299823716|ref|YP_003734509.1| NADH dehydrogenase subunit 6 [Brevoortia tyrannus]
 gi|299758123|dbj|BAJ09827.1| NADH dehydrogenase subunit 6 [Brevoortia tyrannus]
          Length = 173

 Score = 41.6 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +  +LF F  ++    V +   P ++   L+ +      +  + G+ F+A+   ++Y+G 
Sbjct: 5   VCLWLFGF--VLGMVGVASNPAPYFAALGLVMSSGAGCAVLAMFGSPFLALALFLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           ++V F +   +       +           F+  ++ A L+   S +  FSA
Sbjct: 63  MLVVFGYSAALAADPHPESWGDASVFEHAMFYFVVVIAGLLYFGSTWYDFSA 114


>gi|148922584|ref|YP_001293656.1| NADH dehydrogenase subunit 6 [Alosa pseudoharengus]
 gi|148762518|dbj|BAF63969.1| NADH dehydrogenase subunit 6 [Alosa pseudoharengus]
          Length = 173

 Score = 41.6 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +  +LF F  ++    V +   P ++   L+ +      +  + G+ F+A+   ++Y+G 
Sbjct: 5   VCLWLFGF--VLGMVGVASNPAPYFAALGLVMSSGAGCAVLAMFGSPFLALALFLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           ++V F +   +       +           F+  ++ A L+   S++  FSA
Sbjct: 63  MLVVFGYSAALAADPHPESWGDASVFEHAMFYFVVVVAGLLYFGSSWYDFSA 114


>gi|37596563|gb|AAQ95042.1| NADH dehydrogenase subunit 6 [Lonchura malabarica]
          Length = 159

 Score = 41.6 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|156142534|gb|ABU52032.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 41.6 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVAEPR 87
          F++ + +       A   
Sbjct: 61 FVYSVSLAAEPYPEAWGN 78


>gi|71658006|ref|YP_272097.1| NADH dehydrogenase subunit 6 [Gallus varius]
 gi|71040248|dbj|BAE16103.1| NADH dehydrogenase subunit 6 [Gallus varius]
          Length = 173

 Score = 41.6 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++ +  V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGALAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
            ++V F++ + +       A    +   +G     +L   + V    F+ F
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGSWR--VVGYGLGFVLVVWMGVVLGGFVDF 110


>gi|126792906|gb|ABO27309.1| NADH dehydrogenase subunit 6 [Aratinga leucophthalma]
          Length = 170

 Score = 41.6 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++++ LV T  +P Y V  L+F  +   G  + LGA F++++  +VY+G
Sbjct: 2   TYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A            F+ +    +I    
Sbjct: 62  GMLVVFVYSVSLAADPFPQAWGGWHAAGYVLGFVPVGMGFVIWGWG 107


>gi|2789675|gb|AAB96918.1| NADH-ubiquinone oxidoreductase subunit 6 [Geomys personatus]
          Length = 174

 Score = 41.6 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 42/104 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++   +V    +PIY+   LI +     GL L  G  ++ ++  ++Y+G ++V
Sbjct: 7   YLLLVAMVVGFLVVAVKPSPIYAGLGLIISGGAGCGLLLYHGCSYMGLMVYLIYLGGMLV 66

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   +   +           +       IL   LIV   ++
Sbjct: 67  VFGYTTALATEEYPEDWGSNVWVWFLLLSGIILEVILIVLFMDY 110


>gi|16797936|gb|AAL29220.1| NADH dehydrogenase subunit 6 [Tringa totanus]
          Length = 173

 Score = 41.6 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G +
Sbjct: 4  FVFLLGMCFVLGGLAVASNPSPYYGVVGLVLASVAECGWLLSLGVSFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F++ + +       A    +
Sbjct: 64 LVVFVYSVSLAADPFPEAWGDWR 86


>gi|86990387|ref|YP_492677.1| NADH dehydrogenase subunit 6 [Acanthaster brevispinus]
 gi|86476026|dbj|BAE79190.1| NADH dehydrogenase subunit 6 [Acanthaster brevispinus]
          Length = 162

 Score = 41.2 bits (96), Expect = 0.071,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 8/159 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY+   + ++ S LV    +P +    L+   V+   L   LG+ FVA++ +++Y+G 
Sbjct: 1   MVFYIVLVVMLLGSTLVFYSLSPYFGALGLVLVAVSGCVLCGFLGSSFVALVLVLIYMGG 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F++   +      V     +   L    +  +           +   +    S LV
Sbjct: 61  MLVVFVYSTAISAERYPVVSNLNEVFLLSGVGVVWVFVSFDPFLGFSLGGWSVVVESDLV 120

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
             G     +G  L         + GF+ L +++ A+V+ 
Sbjct: 121 GGGTLYNVLGGYL--------LVGGFVFLFALVVALVIT 151


>gi|16356937|ref|NP_443656.1| NADH dehydrogenase subunit 6 [Monopterus albus]
 gi|16267252|dbj|BAB70376.1| NADH dehydrogenase subunit 6 [Monopterus albus]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 40/106 (37%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +  F  ++ S  V +  +P ++   L+       G+ +  G  F+ ++  ++Y+G ++V 
Sbjct: 7   VLLFGLMVGSVGVASNPSPYFAAMGLVMVSGVGCGVLICFGGSFLPLVFFLIYLGGMMVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           F F   +           +      + ++  +     V    +  F
Sbjct: 67  FAFSAALSAEPYPYGWGNRSVKMYVAAYVLGVGCAWKVLLGKWSGF 112


>gi|296099652|gb|ADG95255.1| NADH dehydrogenase subunit 6 [Polypterus sp. Koliba]
          Length = 167

 Score = 41.2 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 50/112 (44%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS + +IS   V +  +P ++ F L+       G+ +  G  F++MI  ++Y+G 
Sbjct: 2   VLMVIFSMIFLISLIAVASNPSPYFAAFGLMVGAGAGCGMLMQCGMTFLSMILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           ++V F +   +       A    +       ++ ++    +V   +F VF +
Sbjct: 62  MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVLLIVGAWVVFVGDFEVFDS 113


>gi|124027085|ref|YP_001012405.1| hypothetical protein Hbut_0188 [Hyperthermus butylicus DSM 5456]
 gi|123977779|gb|ABM80060.1| hypothetical protein Hbut_0188 [Hyperthermus butylicus DSM 5456]
          Length = 180

 Score = 41.2 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          S+     + +A+  S   V  R  IYS+  L+   +  + +F L G  ++A+  L +YVG
Sbjct: 14 SVLLGSLATVAV-GSIAAVRARKTIYSILGLVTLALGVSAVFALHGYTYLAVFILAIYVG 72

Query: 65 AVIVFFLFIIMML 77
          A +     ++M+ 
Sbjct: 73 AGVTLIALVVMVT 85


>gi|326535880|ref|YP_004300328.1| NADH dehydrogenase subunit 6 [Cyanoptila cyanomelana]
 gi|325305630|gb|ADZ10796.1| NADH dehydrogenase subunit 6 [Cyanoptila cyanomelana]
          Length = 172

 Score = 41.2 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          MQ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84
          +G ++V F++ + +       A
Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81


>gi|157488901|gb|ABV57854.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488903|gb|ABV57855.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488907|gb|ABV57857.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|54310681|ref|YP_133820.1| NADH dehydrogenase subunit 6 [Numida meleagris]
 gi|54144461|dbj|BAD60942.1| NADH dehydrogenase subunit 6 [Numida meleagris]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 47/106 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++ +  V +  +P Y V  L+ A V   G  + LG  F+++   ++Y+G
Sbjct: 2   TYFMIFLGVSFMLGTLAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFISLALFMIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ ++ A +++   
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGSWRVVGYGLGFVLVVCAGVVLGGL 107


>gi|208433855|ref|YP_002265560.1| NADH dehydrogenase subunit 6 [Cantherhines pardalis]
 gi|207367043|dbj|BAG72019.1| NADH dehydrogenase subunit 6 [Cantherhines pardalis]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF F  ++    V +  +P ++   L+       G+ L  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLFGLVMGLLAVASNPSPYFAALGLVVTAGLGCGVLLGHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
           F +   +       AEP  +    G   + +L   L+V     +  +   E S      +
Sbjct: 67  FAYSAAL------AAEPYPESWGSGPVVMALLWYLLMVGMGVALFQAGWYEYSWAPADES 120

Query: 130 NVENIGK 136
            V  +G+
Sbjct: 121 GVFAMGR 127


>gi|11643363|gb|AAG39542.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643367|gb|AAG39544.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643375|gb|AAG39548.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643381|gb|AAG39551.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 41.2 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +        E     G +G  F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120


>gi|157488875|gb|ABV57841.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y    L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGAVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|156142570|gb|ABU52050.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142572|gb|ABU52051.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 41.2 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVAEPR 87
          F++ + +       A   
Sbjct: 61 FVYSVSLAAEPYPEAWGN 78


>gi|156142568|gb|ABU52049.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 41.2 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVAEPR 87
          F++ + +       A   
Sbjct: 61 FVYSVSLAAEPYPEAWGN 78


>gi|11643241|gb|AAG39481.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643243|gb|AAG39482.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643247|gb|AAG39484.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643249|gb|AAG39485.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643251|gb|AAG39486.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643253|gb|AAG39487.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643255|gb|AAG39488.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643257|gb|AAG39489.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643259|gb|AAG39490.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643261|gb|AAG39491.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643263|gb|AAG39492.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643265|gb|AAG39493.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643267|gb|AAG39494.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643269|gb|AAG39495.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643271|gb|AAG39496.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643273|gb|AAG39497.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643275|gb|AAG39498.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643277|gb|AAG39499.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643279|gb|AAG39500.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643281|gb|AAG39501.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643285|gb|AAG39503.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643287|gb|AAG39504.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643289|gb|AAG39505.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643291|gb|AAG39506.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643293|gb|AAG39507.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643295|gb|AAG39508.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643297|gb|AAG39509.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643299|gb|AAG39510.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643301|gb|AAG39511.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643303|gb|AAG39512.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643305|gb|AAG39513.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643307|gb|AAG39514.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643309|gb|AAG39515.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643313|gb|AAG39517.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643315|gb|AAG39518.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643319|gb|AAG39520.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643323|gb|AAG39522.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643331|gb|AAG39526.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643339|gb|AAG39530.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643341|gb|AAG39531.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643343|gb|AAG39532.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643345|gb|AAG39533.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643347|gb|AAG39534.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643349|gb|AAG39535.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643351|gb|AAG39536.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643353|gb|AAG39537.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643355|gb|AAG39538.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643357|gb|AAG39539.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643359|gb|AAG39540.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643365|gb|AAG39543.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643369|gb|AAG39545.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643373|gb|AAG39547.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643377|gb|AAG39549.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 41.2 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +       A         G F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYSVSLAADPYPEAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120


>gi|157488887|gb|ABV57847.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|157488865|gb|ABV57836.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488867|gb|ABV57837.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488869|gb|ABV57838.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488871|gb|ABV57839.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488873|gb|ABV57840.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488877|gb|ABV57842.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488879|gb|ABV57843.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488881|gb|ABV57844.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488885|gb|ABV57846.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488891|gb|ABV57849.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488893|gb|ABV57850.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488895|gb|ABV57851.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488897|gb|ABV57852.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488899|gb|ABV57853.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488905|gb|ABV57856.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488909|gb|ABV57858.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488911|gb|ABV57859.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
 gi|157488913|gb|ABV57860.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|86990345|ref|YP_492664.1| NADH dehydrogenase subunit 6 [Acanthaster planci]
 gi|86476012|dbj|BAE79177.1| NADH dehydrogenase subunit 6 [Acanthaster planci]
          Length = 162

 Score = 41.2 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 8/159 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + FY    +    S LV    +P +    L+   V+   L  LLG+ FVA++ +++Y+G 
Sbjct: 1   MVFYAVIVVMPFGSTLVFYSLSPYFGALGLVLVAVSGCFLCGLLGSSFVALVLVLIYMGG 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F++   +            +   L    +           S  +   +    S LV
Sbjct: 61  MLVVFVYSTAISAERYPAVSNLNEVLLLSGVGVVWAFVSFDPFLSFSLGGWSMTVESDLV 120

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164
             G     +G  L         + GF+L ++++ A+V+ 
Sbjct: 121 GGGALYNALGGYL--------LVGGFVLFIALVVALVIT 151


>gi|118581619|ref|YP_902869.1| putative monovalent cation/H+ antiporter subunit A [Pelobacter
           propionicus DSM 2379]
 gi|118504329|gb|ABL00812.1| multisubunit sodium/proton antiporter, MrpA subunit [Pelobacter
           propionicus DSM 2379]
          Length = 767

 Score = 41.2 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 50/113 (44%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +L + + +  + +  T R+ + +V +L       A ++++ GA  +AM    +   ++I+
Sbjct: 602 WLTAAVILGGALMAATTRSRLAAVAALGTVGYGVALIYIIFGAPDLAMTQFCIETLSIIM 661

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           F L +  +       +   + R  L S  IG     L++ A +  +F   G+ 
Sbjct: 662 FVLVLYRLPRFTPLSSPLSRLRDLLVSLSIGCAMGLLVLMAVSRPMFPHIGDW 714


>gi|325126787|ref|YP_004285930.1| NADH dehydrogenase subunit 6 [Bucorvus leadbeateri]
 gi|304365515|gb|ADM26324.1| NADH dehydrogenase subunit 6 [Bucorvus leadbeateri]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F      + ++    V +  +P Y V  L+ A V   G  L LG  F+A++  +VY+G
Sbjct: 2  AYFVLFLGLVFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFIALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVALAADPFPEAWGDWR 86


>gi|325126745|ref|YP_004285891.1| NADH dehydrogenase subunit 6 [Carduelis sinica]
 gi|324022961|gb|ADY15527.1| NADH dehydrogenase subunit 6 [Carduelis sinica]
          Length = 172

 Score = 41.2 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +G ++V F++ + +       +         G     ++   L++  +  M+
Sbjct: 60  LGGMLVVFVYSVSLAADPYPESWASWGVVGYGLGMGLVVLVGLVIGGALGML 111


>gi|295065526|ref|YP_003587304.1| NADH dehydrogenase subunit 6 [Otis tarda]
 gi|223951409|gb|ACN29662.1| ND6 [Otis tarda]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+   V   G  L LGA FV+++  +VY+G
Sbjct: 2  TYFMFFLGVCFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLLSLGASFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPGAWGDWR 86


>gi|238550633|gb|ACR44481.1| NADH dehydrogenase subunit 6 [Perdix dauurica]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 45/107 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++S   V +  +P Y V  L+ A V   G  + LG  F+++   +VY+G
Sbjct: 2   TYFVIFLGVSFVLSVLAVASNPSPYYGVVGLVLAAVAGCGWLVNLGVSFISLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            ++V F++ + +       A    +    G  F+ ++    I+    
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVIGYGLGFVLVVCVGAILGGLT 108


>gi|213136317|gb|ACJ43854.1| NADH dehydrogenase subunit 6 [Salamandrina terdigitata]
          Length = 172

 Score = 41.2 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 1/129 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    II    V +  +P ++ F LI A V+   L +  G  F++++ +++Y+G ++V 
Sbjct: 7   LFMVGVIIGLIAVASNPSPYFAAFGLILASVSGCCLLVDFGVSFLSLVLMLIYLGGMMVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
           F +   +       A        ++  +F+G++    +   S  +      + S L   G
Sbjct: 67  FAYSASLAAEPYPEAWGSLSVVVYVCIYFVGLMFCGYLFGFSFSIWLVFSEDFSNLHTIG 126

Query: 129 NNVENIGKV 137
            +   +G++
Sbjct: 127 GDWGGVGEI 135


>gi|18138256|ref|NP_542467.1|ND6_15900 NADH dehydrogenase subunit 6 [Lepidosiren paradoxa]
 gi|18001021|gb|AAL55255.1|AF302934_13 NADH dehydrogenase subunit 6 [Lepidosiren paradoxa]
          Length = 169

 Score = 41.2 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 43/111 (38%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +     IIS   V +  +P+++   L+       G+ + LG  F++++  ++Y+G +
Sbjct: 4   IFVMLLVGFIISLIGVASNPSPMFAALGLVCGAAFGCGILVWLGGSFLSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +V F + + +   +   A              G+     +       V S 
Sbjct: 64  LVVFAYSVALSSEEYPEAWMDWPVMMNFIMLGGVTVWWWVFLEVGVDVMSG 114


>gi|11643311|gb|AAG39516.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643317|gb|AAG39519.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643321|gb|AAG39521.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643325|gb|AAG39523.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643327|gb|AAG39524.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643329|gb|AAG39525.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
 gi|11643333|gb|AAG39527.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
          Length = 172

 Score = 41.2 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +        E     G +G  F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGMVIMVGAVVSGVFEVLVDGGTVNNV 120


>gi|219524162|ref|YP_002456309.1| NADH dehydrogenase subunit 6 [Accipiter gentilis]
 gi|218783311|dbj|BAH03680.1| NADH dehydrogenase subunit 6 [Accipiter gentilis]
          Length = 172

 Score = 41.2 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + M       +    +
Sbjct: 62 GMLVVFVYSVCMAADPFPESWGDWR 86


>gi|14141890|ref|NP_115440.1| NADH dehydrogenase subunit 6 [Dromaius novaehollandiae]
 gi|14039565|gb|AAK53305.1|AF338711_13 NADH dehydrogenase subunit VI [Dromaius novaehollandiae]
          Length = 173

 Score = 41.2 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      I+ +  V +  +P Y V  L+   V   G  L LG  F++++  +VY+G
Sbjct: 2  TYFIFFLGLCFILGALAVASNPSPYYGVLGLVLGSVVGCGWLLSLGVSFISLVLFLVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVSLAADPFPETWGDWR 86


>gi|19481568|gb|AAL88856.1|AF407123_1 NADH dehydrogenase subunit 6 [Amblyospiza albifrons]
          Length = 159

 Score = 40.8 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|157488883|gb|ABV57845.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G +
Sbjct: 4  FVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F++ + +       A    +
Sbjct: 64 LVVFVYSVSLAADPFPEAWGDWR 86


>gi|9230588|gb|AAF85918.1|AF171655_2 NADH dehydrogenase subunit 6 [Loxia leucoptera leucoptera]
 gi|9230606|gb|AAF85930.1|AF171661_2 NADH dehydrogenase subunit 6 [Loxia leucoptera bifasciata]
          Length = 172

 Score = 40.8 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           +G ++V F++ + +        E     G +G  F   L   + +     +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVSWGVVGYGFGMGLVVLVGLVMGGML 108


>gi|1171829|sp|P43189|NU6M_AETCR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394654|emb|CAA52133.1| NADH dehydrogenase subunit 6 [Aethia cristatella]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++ S  V +  +P Y V  L+ A +   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLFLGLCFVLGSLAVASNPSPYYGVVGLVLASIAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A         G  F+ +L   LIV
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWGVVGYGVGFVAVLMVGLIV 104


>gi|280978306|ref|YP_003345241.1| NADH dehydrogenase subunit 6 [Tragopan caboti]
 gi|269975405|gb|ACZ55627.1| NADH dehydrogenase subunit 6 [Tragopan caboti]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 44/102 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++ +  V +  +P Y V  L+ A V   G  + LG  F+++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGALAVASNPSPYYGVVGLVLASVVGCGWLVNLGVSFISLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
            ++V F++ + +       A    +    G  F+ ++    +
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCMGAL 103


>gi|5834908|ref|NP_006976.1|ND6_10181 NADH dehydrogenase subunit 6 [Strongylocentrotus purpuratus]
 gi|128823|sp|P15553|NU6M_STRPU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|13676|emb|CAA31161.1| NADH dehydrogenase (ND6) subunit 6 [Strongylocentrotus purpuratus]
          Length = 165

 Score = 40.8 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 8/157 (5%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y+   + +  S LV    +P YS   L+   V  + +   LG+ FV ++  +VY+G ++V
Sbjct: 4   YVTLIVMLFGSTLVFYSLSPYYSALGLVVFSVPGSFVLSFLGSSFVPIVLFLVYIGGMLV 63

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F            ++  R          +G++         +F  F     +      G
Sbjct: 64  VF-------PYSSAISPERFPSVNNLGEVVGLVFLFSSWVFMSFDNFQDLKNIFHCFVSG 116

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
            ++       Y      + +  F+LL++++GA+++  
Sbjct: 117 ESLVG-SNTFYNSGGVLVILGVFVLLVALVGALIISR 152


>gi|108793363|ref|YP_637087.1| NADH dehydrogenase subunit 6 [Eudyptes chrysocome]
 gi|108755468|dbj|BAE95704.1| NADH dehydrogenase subunit 6 [Eudyptes chrysocome]
          Length = 172

 Score = 40.8 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  + LG  FVA++  +VY+G ++V 
Sbjct: 7   FLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVALVLFMVYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           F++ + +      V          G   + +LA  L V       F      S  V  
Sbjct: 67  FVYSVALAADPFPVGWGEWPVVVYGVGLVLVLAIGLGVGGFEGWKFGVNTVDSGGVVP 124


>gi|215260094|ref|YP_002327452.1| NADH dehydrogenase subunit 6 [Scarus ghobban]
 gi|213138614|gb|ACJ45007.1| NADH dehydrogenase subunit 6 [Scarus ghobban]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S    LF+   ++    V +  +P Y+  +L+       GL    G  F+A++  ++Y+G
Sbjct: 2   SFLVILFTVGMVLGLIGVASNPSPYYAALALVVVAWAGCGLLTSYGGSFLALVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +       A  R   G     +   +    +     +
Sbjct: 62  GMLVVFAYSSALAAEIYPEAWLRAGPGVAMYLYTFAVVGATLTYLYYW 109


>gi|1304709|gb|AAA99076.1| NADH dehydrogenase subunit 6 [Grus antigone gillae]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|5835959|ref|NP_008724.1|ND6_15092 NADH dehydrogenase subunit 6 [Falco peregrinus]
 gi|3600005|gb|AAC35510.1| NADH dehydrogenase subunit VI [Falco peregrinus]
          Length = 175

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MVM    F+      +  +  V +  +P Y V  L+   V   G  + LG  F++++  +
Sbjct: 1   MVMTYFVFF-LGVCFVFGALAVASNPSPYYGVVGLVLGSVVGCGWLMSLGVSFISLVLFM 59

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY+G ++V F++ + +       A    +    G   I +L    ++  S   +    G 
Sbjct: 60  VYLGGMLVVFVYSVALAADPFPEAWGNWRVVGCGVGLILLLFVGAVIGGSVGYLSPGVGT 119

Query: 121 L 121
           +
Sbjct: 120 V 120


>gi|156142536|gb|ABU52033.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142538|gb|ABU52034.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVA 84
          F++ + +       A
Sbjct: 61 FVYSVSLAAEPYPEA 75


>gi|19481582|gb|AAL88863.1|AF407130_1 NADH dehydrogenase subunit 6 [Junco hyemalis]
          Length = 159

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLIMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F++ + +       A         G F +G++    +V      +   EG ++
Sbjct: 60  LGGMLVVFVYSVSLAAEPYPEAWGSWNVVGYG-FGMGLVVMVGLVMGGVLGLLVDEGTVN 118


>gi|19481562|gb|AAL88853.1|AF407120_1 NADH dehydrogenase subunit 6 [Sporopipes frontalis]
          Length = 159

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       +     V +  +P Y V  L+ + +   G  + LG  F++++ ++VY
Sbjct: 2  MEFVLF--LGLCFVFGGLAVASNPSPYYGVVGLVVSAIAGCGWLVSLGVSFMSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|9230603|gb|AAF85928.1|AF171660_2 NADH dehydrogenase subunit 6 [Loxia leucoptera megaplaga]
          Length = 172

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +        E     G +G  F +G++    +V    F +   E  +
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPESWVSWGVVGYGFGMGLVVLVGLVMGGMFGLLVEESTV 117

Query: 122 S 122
           +
Sbjct: 118 N 118


>gi|1171842|sp|P43199|NU6M_CYCPS RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394672|emb|CAA52130.1| NADH dehydrogenase subunit 6 [Cyclorrhynchus psittacula]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A         G  F+ +L A LIV  S
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWGVVGYGVGFVVVLVAGLIVGGS 107


>gi|218157328|ref|YP_002364480.1| NADH dehydrogenase subunit 6 [Todiramphus sanctus vagans]
 gi|166093123|gb|ABY82554.1| NADH dehydrogenase subunit 6 [Todiramphus sanctus vagans]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +   F  I+    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G +
Sbjct: 4  FMFFLGFCFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLNLGVSFVALVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F++ + +       A    +
Sbjct: 64 LVVFVYSVSLAADPFPEAWADWR 86


>gi|16797942|gb|AAL29223.1| NADH dehydrogenase subunit 6 [Numenius phaeopus]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLLLGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|296099596|gb|ADG95203.1| NADH dehydrogenase subunit 6 [Polypterus endlicherii congicus]
          Length = 167

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS   +IS   V +  +P ++ F L+       G+ +  G  F++MI  ++Y+G 
Sbjct: 2   VLMVVFSMFFLISLIAVASNPSPYFAAFGLMIGAGAGCGMLVQCGMTFLSMILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           ++V F +   +       A    +       ++ ++    +V   NF VF +
Sbjct: 62  MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVLLIMGMWVVFVGNFEVFDS 113


>gi|108793530|ref|YP_637073.1| NADH dehydrogenase subunit 6 [Phalanger interpositus]
 gi|94481227|dbj|BAE94030.1| NADH dehydrogenase subunit 6 [Phalanger vestitus]
          Length = 167

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 49/115 (42%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  +  +LFSF+ I+      +  +PIY   SL+ +    + + + LG  F+ ++  +VY
Sbjct: 1   MGMMVVFLFSFLLILGFVAFASKPSPIYGGLSLVVSGGFGSAIVVSLGNTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M   +   +       F    F  ++       +    V +A
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNMVAFSMLLFTLLVELVWYFMSGEIEVSTA 115


>gi|1304734|gb|AAA99091.1| NADH dehydrogenase subunit 6 [Grus vipio]
 gi|224504148|gb|ACN53721.1| NADH dehydrogenase subunit 6 [Grus vipio]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFMVFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
            ++V F++ + +       A    +   +G     +L   +      F+
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWR--VVGYIAGLVLVLVMGAVVGGFV 108


>gi|270155274|gb|ACZ62672.1| NADH dehydrogenase subunit 6 [Pleuragramma antarcticum]
          Length = 174

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YLF    ++    V +   P Y+   L+       GL L LG  F  ++  ++Y+G ++V
Sbjct: 6   YLFMLGMVVGMAAVASNPPPFYAALGLVVVAAMGCGLILSLGGTFSCLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAEGELSRLV 125
            F + + +           +      + ++G+      +  S+      + A GE    V
Sbjct: 66  VFAYSVALCAGAPSTGLGEESVLKCMAGYLGVTGVVGFLQGSSEGPAFWWFAGGEWEMAV 125

Query: 126 FKG 128
            +G
Sbjct: 126 MQG 128


>gi|5835973|ref|NP_008737.1|ND6_15093 NADH dehydrogenase subunit 6 [Smithornis sharpei]
 gi|3600011|gb|AAC35514.1| NADH dehydrogenase subunit VI [Smithornis sharpei]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F  L     ++    V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+G +
Sbjct: 4  FLLLLGMCFVLGGLAVASNPSPYYGVVGLVMASVVGCGWLMSLGLSFVSLVLFLVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F++ + +       A    +
Sbjct: 64 LVVFVYSVSLAADPFPEAWGDWR 86


>gi|272886790|gb|ACZ96470.1| NADH dehydrogenase subunit 6 [Didymium iridis]
 gi|272886792|gb|ACZ96471.1| NADH dehydrogenase subunit 6 [Didymium iridis]
          Length = 167

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 15/144 (10%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M +  +FF L  F+ I          N I+++ +LI  F+N A L  +    F+    ++
Sbjct: 1   MTLIFIFFALLLFITI--------TPNAIHALLALILLFINFAILLFITETSFLGFAYIL 52

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY+GA+ V FL+II++L +       R     L    IG ++    +   +  ++     
Sbjct: 53  VYIGAICVLFLYIILLLHLRSYSLMQRSNALILIGLLIGFISIFSYINYISENLYIDTAA 112

Query: 121 LSRLVFKGNNVENIGKVLYTQYAY 144
            +  +            L+T Y +
Sbjct: 113 YNVFLLSD-------LQLFTSYLF 129


>gi|215399179|ref|YP_002332307.1| NADH dehydrogenase subunit 6 [Podarcis siculus]
 gi|62900879|gb|AAY18767.1| NADH dehydrogenase subunit 6 [Podarcis siculus]
 gi|213983314|gb|ACJ54996.1| NADH dehydrogenase subunit 6 [Podarcis siculus]
          Length = 171

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 51/104 (49%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
            F    ++S   V +  +P +   +L+ +     G+ +LLG+ FV+++ L++Y+G ++V 
Sbjct: 7   FFMVCLVVSLIGVASNPSPNFGAGNLVVSASVGCGILILLGSSFVSLVLLLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           F + + +       A   K  G+ G + + +L   ++     F+
Sbjct: 67  FAYSVALASDPFPEAWG-KVGGYFGGYIVLVLFLVVMFSEGGFI 109


>gi|148292240|dbj|BAF62945.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|150372639|dbj|BAF66104.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|150372653|dbj|BAF66117.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
          Length = 175

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + F ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLAC 105


>gi|22530886|gb|AAM96950.1| NADH dehydrogenase subunit 6 [Schwanniomyces occidentalis]
          Length = 146

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 9/132 (6%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F++ ISS L + +  P+ S+   +  F + A      G   + M+ +++YVGA+ + FLF
Sbjct: 3   FISGISSLLAIGMLTPVQSMLFTMMLFTSTAISLYSQGYVLMGMLYMLMYVGAMAMLFLF 62

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
           ++ +L +D         +G +    + +L   L+     +  +    E+S +    N + 
Sbjct: 63  MLSLLKMD------YTVQGTVSPLMMTLLTMSLMPLDMTYETYGMMTEVSNV---WNELV 113

Query: 133 NIGKVLYTQYAY 144
            +G  LYT+YA 
Sbjct: 114 VVGNQLYTEYAV 125


>gi|29569562|gb|AAO85249.1| NADH dehydrogenase subunit 6 [Buteo polyosoma poecilochrous]
          Length = 172

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     ++    V +  +P Y    L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2   AYFVLLLGMGFVLGGLAVASNPSPYYGAVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G+  + +L   +I   +
Sbjct: 62  GMLVVFVYSVCLAADPFPEAWGDWRVLGYGAGMVLVLVVGVIAGGA 107


>gi|1304712|gb|AAA99078.1| NADH dehydrogenase subunit 6 [Grus antigone gillae]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|108793419|ref|YP_637009.1| NADH dehydrogenase subunit 6 [Nipponia nippon]
 gi|84579397|dbj|BAE72088.1| NADH dehydrogenase subunit 6 [Nipponia nippon]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        I+    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVVFLGVGFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            ++V F++ + +            +    G  F+ +L    +V    
Sbjct: 62  GMLVVFVYSVALAADLFPETWGDWRVVGYGVGFVSVLWVGAVVGGLA 108


>gi|115494717|ref|YP_778719.1| NADH dehydrogenase subunit 6 [Arctocephalus pusillus]
 gi|115344855|emb|CAJ56908.1| NADH dehydrogenase subunit 6 [Arctocephalus pusillus]
          Length = 175

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + F ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLAC 105


>gi|257077085|ref|ZP_05571446.1| NADH dehydrogenase subunit J [Ferroplasma acidarmanus fer1]
          Length = 73

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163
              K  ++ +IG +L++ Y  P E+   +L+ S+IG + +
Sbjct: 28  FAIKPQDITDIGTLLFSTYIVPFELLSVLLVASIIGVMYI 67


>gi|66276071|ref|YP_238215.1| NADH dehydrogenase subunit 6 [Larus dominicanus]
 gi|34223678|gb|AAQ63032.1| NADH dehydrogenase subunit 6 [Larus dominicanus]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|9230591|gb|AAF85920.1|AF171656_2 NADH dehydrogenase subunit 6 [Loxia scotica]
          Length = 172

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2   MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           +G ++V F++ + +       A+P  +           L   L+V     M
Sbjct: 60  LGGMLVVFVYSVSL------AADPYPESWVSWGVVGYGLGMGLVVLVGLVM 104


>gi|20330601|ref|NP_620339.1| NADH dehydrogenase subunit 6 [Haematopus ater]
 gi|20270025|gb|AAL74044.1| NADH dehydrogenase subunit 6 [Haematopus ater]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 38/80 (47%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVFFLGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVA 84
           ++V F++ + +       A
Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81


>gi|312233220|ref|YP_004021442.1| NADH dehydrogenase subunit 6 [Anhinga rufa]
 gi|312233221|ref|YP_004021443.1| NADH dehydrogenase subunit 6 [Anhinga rufa]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2  AYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|156142554|gb|ABU52042.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142556|gb|ABU52043.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
 gi|156142582|gb|ABU52056.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVA 84
          F++ + +       A
Sbjct: 61 FVYSVSLAAEPYPEA 75


>gi|190349481|ref|YP_001974552.1| NADH dehydrogenase subunit 6 [Platalea minor]
 gi|134268955|gb|ABO68978.1| NADH dehydrogenase subunit 6 [Platalea minor]
 gi|283131464|dbj|BAI63462.1| NADH dehydrogenase subunit 6 [Platalea minor]
 gi|283131465|dbj|BAI63463.1| NADH dehydrogenase subunit 6 [Platalea minor]
 gi|283131468|dbj|BAI63465.1| NADH dehydrogenase subunit 6 [Platalea minor]
 gi|283131469|dbj|BAI63466.1| NADH dehydrogenase subunit 6 [Platalea minor]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 47/103 (45%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVVFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G+ F+ +L   +++
Sbjct: 62  GMLVVFVYSVALAADLFPEAWGDWRVMGYGAGFVLVLIVGVVM 104


>gi|19481556|gb|AAL88850.1|AF407117_1 NADH dehydrogenase subunit 6 [Euplectes macrourus]
          Length = 159

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y    L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGVCFVLGGLAVASNPSPYYGAAGLVVAAIAGGGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|325126773|ref|YP_004285917.1| NADH dehydrogenase subunit 6 [Carduelis spinus]
 gi|324022975|gb|ADY15540.1| NADH dehydrogenase subunit 6 [Carduelis spinus]
          Length = 172

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F        +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|148292226|dbj|BAF62932.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
          Length = 175

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + F ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLAC 105


>gi|5835471|ref|NP_008405.1|ND6_13475 NADH dehydrogenase subunit 6 [Balanoglossus carnosus]
 gi|3065681|gb|AAD11944.1| NADH dehydrogenase subunit 6 [Balanoglossus carnosus]
          Length = 160

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + SF+ +    LV   R+P +S   ++ A V  +G  ++ G  F+ +I  ++Y+G ++V 
Sbjct: 5   VLSFLTVGGGILVFISRSPYFSALGVVGAVVGFSGFLIMSGGVFLGLILFLMYLGGMLV- 63

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
            +F            +    +        G L    +     ++
Sbjct: 64  -VFAYSAALASDRYPDVGWSKALPLVVIFGGLVPYFVFEGGGWV 106


>gi|1304706|gb|AAA99074.1| NADH dehydrogenase subunit 6 [Grus antigone gillae]
 gi|1304720|gb|AAA99083.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei]
 gi|1304725|gb|AAA99086.1| NADH dehydrogenase subunit 6 [Grus antigone antigone]
 gi|1304728|gb|AAA99088.1| NADH dehydrogenase subunit 6 [Grus antigone antigone]
 gi|224504176|gb|ACN53747.1| NADH dehydrogenase subunit 6 [Grus antigone]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|326536088|ref|YP_004300519.1| NADH dehydrogenase subunit 6 [Odocoileus virginianus]
 gi|309399264|gb|ADO78899.1| NADH dehydrogenase subunit 6 [Odocoileus virginianus]
          Length = 175

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +    +  +         +  LG+F  G+L   ++VC
Sbjct: 61  LGGMMVVFGYT-TAMATEQYPEMWVSNKTVLGAFVTGLLMEIMMVC 105


>gi|238550577|gb|ACR44429.1| NADH dehydrogenase subunit 6 [Tragopan temminckii]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 44/102 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++ +  V +  +P Y V  L+ A V   G  + LG  F+++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGALAVASNPSPYYGVVGLVLASVVGCGWLVNLGISFISLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
            ++V F++ + +       A    +    G  F+ ++    +
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCMGAL 103


>gi|19481578|gb|AAL88861.1|AF407128_1 NADH dehydrogenase subunit 6 [Passer domesticus]
          Length = 159

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F        +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F + + +
Sbjct: 60 LGGMLVVFAYSVSL 73


>gi|1171851|sp|P43207|NU6M_URIAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|262835|gb|AAB24770.1| NADH dehydrogenase subunit 6 [Uria aalge]
 gi|394690|emb|CAA52118.1| NADH dehydrogenase subunit 6 [Uria aalge]
 gi|21104310|emb|CAC80353.1| NADH dehydrogenase subunit 6 [Uria aalge]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|1171844|sp|P43201|NU6M_FRACR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394676|emb|CAA52135.1| NADH dehydrogenase subunit 6 [Fratercula corniculata]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +  S   ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVFFLSLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVALAADPFPEAWGDWR 86


>gi|730211|sp|P41322|NU6M_LARCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394678|emb|CAA52137.1| NADH dehydrogenase subunit 6 [Larus canus]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVVASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97
           ++V F++ + +       A    +    G+ F
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGAGF 94


>gi|313662241|gb|ADR72186.1| NADH dehydrogenase subunit 6 [Polytomella sp. SAG 63-9]
          Length = 116

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 33  FSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92
              I  ++N      LLG EF+A+I  +VYVGA+ V FLF++M++ +             
Sbjct: 1   MYSILLYINVQLFLTLLGFEFMALIYALVYVGALAVLFLFVVMLIRVQAAAFLN------ 54

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152
                   L+  +         FS      + VF    +   G  LYT +A    I+   
Sbjct: 55  --------LSTNITFWLLIIFDFSYAYSNLQFVFTSECLVCFGASLYTSFADLTIINSIA 106

Query: 153 LLLSMIGAIV 162
           L  ++ G++V
Sbjct: 107 LTAALFGSLV 116


>gi|9230585|gb|AAF85916.1|AF171654_2 NADH dehydrogenase subunit 6 [Loxia curvirostra japonica]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2   MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           +G ++V F++ + +       A+P  +           L   L+V     M
Sbjct: 60  LGGMLVVFVYSVSL------AADPYPESWVSWGVVGYGLGMGLVVLVGLVM 104


>gi|1304717|gb|AAA99081.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|1304714|gb|AAA99079.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei]
 gi|1304722|gb|AAA99084.1| NADH dehydrogenase subunit 6 [Grus antigone antigone]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|16797921|gb|AAL29213.1| NADH dehydrogenase subunit 6 [Xenus cinereus]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLLLGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A    +    G  FI
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFI 95


>gi|53793992|ref|YP_112475.1| NADH dehydrogenase subunit 6 [Chlorurus sordidus]
 gi|53749086|dbj|BAD52429.1| NADH dehydrogenase subunit 6 [Chlorurus sordidus]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 2/133 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S    LF+   ++    V +  +P ++  +L+       GL    G  F+A++  ++Y+G
Sbjct: 2   SFLVVLFTVGLVLGLIGVASNPSPYFAALALVVVAWAGCGLLTSYGGSFLALVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGELS 122
            ++V F +   +       A  R   G     +   +A   ++   ++     + +G + 
Sbjct: 62  GMLVVFAYSSALAAEIYPEAWLRAGPGVAMYLYAFAVAGATLIYFYHWEGGDLALDGVVD 121

Query: 123 RLVFKGNNVENIG 135
            L     +VE + 
Sbjct: 122 WLSPFAGDVEGVA 134


>gi|301503285|gb|ADK76205.1| NADH dehydrogenase subunit 6 [Brotogeris cyanoptera]
          Length = 167

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++++ LV +  +P Y    L F  V   G  + LGA FVA+   +VY+G
Sbjct: 2   TYFVLALGVGFVLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            ++V F++ + +            +        +  + A ++       V  + G
Sbjct: 62  GMLVVFVYSVSLAADPFPQVWGGWRAVVYAFVVLLAVGAGMVGWGLGVQVVDSVG 116


>gi|5835735|ref|NP_008548.1|ND6_15050 NADH dehydrogenase subunit 6 [Corvus frugilegus]
 gi|4454087|emb|CAA77207.1| NADH dehydrogenase subunit 6 [Corvus frugilegus]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M  + F    F  ++    V +  +P Y V  L+ A +   G  L +G  FV+++ ++VY
Sbjct: 2  MNFVLFMTLCF--VLGGLAVASNPSPYYGVVGLVVASIAGCGWLLSMGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89
          +G ++V F++ + +       +    +
Sbjct: 60 LGGMLVVFVYSVSLAADPYPESWGDWR 86


>gi|327492833|ref|YP_004347715.1| NADH dehydrogenase subunit 6 [Tylerius spinosissimus]
 gi|327392656|dbj|BAK10079.1| NADH dehydrogenase subunit 6 [Tylerius spinosissimus]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           + +L F L   + +    +VV   NP   Y VF+L+   +   G  +L G  F++++ L+
Sbjct: 2   LYALVFLLLGMLVV----MVVLSTNPAPFYGVFNLVLVALLCCGAIILHGGTFLSLVLLL 57

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +Y+G ++V F++   +       A        +  FF G  +  L V   + ++
Sbjct: 58  IYMGGMLVVFIYSSALSADKDPEAPTG---WQVSLFFFGYFSFVLGVLGMSTVL 108


>gi|9230582|gb|AAF85914.1|AF171653_2 NADH dehydrogenase subunit 6 [Loxia curvirostra luzonensis]
 gi|9230594|gb|AAF85922.1|AF171657_2 NADH dehydrogenase subunit 6 [Loxia curvirostra curvirostra]
 gi|9230615|gb|AAF85936.1|AF171664_2 NADH dehydrogenase subunit 6 [Loxia pytyopsittacus]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2   MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           +G ++V F++ + +       A+P  +           L   L+V     M
Sbjct: 60  LGGMLVVFVYSVSL------AADPYPESWVSWGVVGYGLGMGLVVLVGLVM 104


>gi|156142532|gb|ABU52031.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 166

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 37/78 (47%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++  + V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1  FLGLCFVLGGWAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70 FLFIIMMLDIDIEVAEPR 87
          F++ + +       A   
Sbjct: 61 FVYSVSLAAEPYPEAWGN 78


>gi|29569550|gb|AAO85243.1| NADH dehydrogenase subunit 6 [Buteo lineatus alleni]
 gi|29569552|gb|AAO85244.1| NADH dehydrogenase subunit 6 [Buteo lineatus elegans]
 gi|29569554|gb|AAO85245.1| NADH dehydrogenase subunit 6 [Buteo lineatus lineatus]
 gi|281308286|gb|ADA58291.1| NADH dehydrogenase subunit 6 [Buteo lineatus]
 gi|281308288|gb|ADA58292.1| NADH dehydrogenase subunit 6 [Buteo lineatus]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   +   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|19481546|gb|AAL88845.1|AF407112_1 NADH dehydrogenase subunit 6 [Lonchura cucullata]
          Length = 158

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|11643335|gb|AAG39528.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +        E     G +G  F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYWVSLAA--DPYPEAWGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120


>gi|37596487|gb|AAQ95004.1| NADH dehydrogenase subunit 6 [Euplectes ardens]
          Length = 159

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y    L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGVCFVLGGLAVASNPSPYYGAAGLVVAAIAGGGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|164449790|ref|YP_001648844.1| NADH dehydrogenase subunit 6 [Sylvia crassirostris]
 gi|164414720|emb|CAP10146.1| NADH dehydrogenase subunit 6 [Sylvia crassirostris]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 1/113 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S   ++  + V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLFFVLGGWAVASNPSPYYGVVGLVVASVAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           +V F++ + +  D   E        G+     + I+   ++     F+V +  
Sbjct: 64  LVVFVYSVSLAADPYPEGWSDWGVVGYGFGMGLVIVIGAILGEVYGFLVDAGT 116


>gi|9230579|gb|AAF85912.1|AF171652_2 NADH dehydrogenase subunit 6 [Loxia curvirostra himalayensis]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY
Sbjct: 2   MEFVLF--LGVCFALGGLTVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           +G ++V F++ + +       A+P  +           L   L+V     M
Sbjct: 60  LGGMLVVFVYSVSL------AADPYPESWVSWGVVGYGLGMGLVVLVGLVM 104


>gi|9230597|gb|AAF85924.1|AF171658_2 NADH dehydrogenase subunit 6 [Loxia curvirostra minor]
 gi|9230609|gb|AAF85932.1|AF171662_2 NADH dehydrogenase subunit 6 [Loxia curvirostra pusilla]
 gi|9230612|gb|AAF85934.1|AF171663_2 NADH dehydrogenase subunit 6 [Loxia curvirostra stricklandi]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           +G ++V F++ + +       A+P  +           L   L+V     M
Sbjct: 60  LGGMLVVFVYSVSL------AADPYPESWVSWGVVGYGLGMGLVVLVGLVM 104


>gi|126792870|gb|ABO27287.1| NADH dehydrogenase subunit 6 [Orthopsittaca manilata]
          Length = 170

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G
Sbjct: 2   TYFLVFLGVGFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            ++V F++ + +       A         G + +      L+     F+V+  +G
Sbjct: 62  GMLVVFVYSVSLAADPFPQA--------WGGWQVAGYVLGLVPVGVGFVVWGWDG 108


>gi|5081455|gb|AAD39390.1|AF123910_1 NADH dehydrogenase subunit 6 [Grus japonensis]
 gi|224504078|gb|ACN53656.1| NADH dehydrogenase subunit 6 [Grus japonensis]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFMFFMGMCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
            ++V F++ + +       A    +   +  + +G++   ++
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWR---VVGYIVGLVLVLIM 100


>gi|18767660|ref|NP_572026.1|ND6_15950 NADH dehydrogenase subunit 6 [Coturnix japonica]
 gi|37154580|sp|P24981|NU6M_COTJA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|15208283|dbj|BAB62927.1| NADH dehydrogenase subunit 6 [Coturnix japonica]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 45/101 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++ +  V +  +P Y V  L+ A V   G  + LG  FV+++  ++Y+G
Sbjct: 2   TYFVIFLGVCFMLGTLAVASNPSPYYGVVGLVLASVVGCGWLVNLGVSFVSLVLFMIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
            ++V F++ + +       A    +    G  F+ ++   +
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGSWRVMGYGLGFVLVVCMGM 102


>gi|238908466|ref|YP_002929450.1| NADH dehydrogenase subunit 6 [Platalea leucorodia]
 gi|238626030|gb|ACR48312.1| NADH dehydrogenase subunit 6 [Platalea leucorodia]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 46/103 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVVFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +            +    G+ F+ +L   +++
Sbjct: 62  GMLVVFVYSVALAADLFPETWGDWRVMGYGAGFVLVLIVGVVM 104


>gi|327492763|ref|YP_004347650.1| NADH dehydrogenase subunit 6 [Marilyna darwinii]
 gi|327392628|dbj|BAK10053.1| NADH dehydrogenase subunit 6 [Marilyna darwinii]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + S   ++   L+    +P +   +L+   + + G+ +L G  F++++ L++Y+G ++V 
Sbjct: 7   MLSLGIMVGMILLALNPSPFFGSLNLVLLVLYSCGILILYGGSFLSLVLLMIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102
           F++    L  D +   P+     LG  +  +L 
Sbjct: 67  FVYS-SALSADKDPEMPKSISFILGLGWYFLLV 98


>gi|299889170|dbj|BAJ10291.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889171|dbj|BAJ10292.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889174|dbj|BAJ10294.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889175|dbj|BAJ10295.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889178|dbj|BAJ10297.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889179|dbj|BAJ10298.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889182|dbj|BAJ10300.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
 gi|299889183|dbj|BAJ10301.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus]
          Length = 175

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGSWR 86


>gi|302201536|gb|ADL09097.1| NADH dehydrogenase subunit 6 [Crotophaga ani]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVFFLGVCFMLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G   + ++   ++   +
Sbjct: 62  GMLVVFVYSVSLAAEPFPEAWGDWRVLGYGVGLLLVIVFGVVFGGA 107


>gi|299889198|dbj|BAJ10312.1| NADH dehydrogenase subunit 6 [Phoebastria nigripes]
 gi|299889199|dbj|BAJ10313.1| NADH dehydrogenase subunit 6 [Phoebastria nigripes]
          Length = 175

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGSWR 86


>gi|229822296|ref|YP_002883822.1| NADH dehydrogenase (quinone) [Beutenbergia cavernae DSM 12333]
 gi|229568209|gb|ACQ82060.1| NADH dehydrogenase (quinone) [Beutenbergia cavernae DSM 12333]
          Length = 999

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   + I+ + L    R  + +V  L       A LF L GA  +A+  ++V     I  
Sbjct: 596 VVGVIVILGAILAARSRRRMKAVLLLGACGYGVAVLFELQGAPDLALTQVLV---ETITL 652

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
            +F++++  +    +             +G+L        +  +  +
Sbjct: 653 VVFVLVLRRLPPYFSNRPLAASRWWRAALGVLVGAFFAFLALIIPTA 699


>gi|29569578|gb|AAO85257.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis]
 gi|76009046|gb|ABA38985.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis]
 gi|76009052|gb|ABA38988.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis]
 gi|281308292|gb|ADA58294.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVMGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|189095499|ref|YP_001936605.1| NADH dehydrogenase subunit 6 [Phasianus versicolor]
 gi|171702217|dbj|BAG16247.1| NADH dehydrogenase subunit 6 [Phasianus versicolor]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 45/105 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  F++++  +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++V F++ + +       A    +    G  F+ ++   + +  
Sbjct: 62  GMLVVFVYSVSLAADPYPQAWGDWRVVGYGLGFVLVVCVGVFLAG 106


>gi|1171843|sp|P43200|NU6M_FRAAR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394674|emb|CAA52134.1| NADH dehydrogenase subunit 6 [Fratercula arctica]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +  S   ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVFFLSLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVALAADPFPEAWGDWR 86


>gi|20330587|ref|NP_620326.1| NADH dehydrogenase subunit 6 [Arenaria interpres]
 gi|20270011|gb|AAL74031.1| NADH dehydrogenase subunit 6 [Arenaria interpres]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 46/107 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            +I  F+  + +       A    +    G  F+ ++ + ++V    
Sbjct: 62  GMISVFVSSVSLAADPFPEAWGDWRVVGYGVGFMLVVISGMVVGGIG 108


>gi|238550605|gb|ACR44455.1| NADH dehydrogenase subunit 6 [Pucrasia macrolopha]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVNLGVSFVSLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            ++V F++ + +       A    +   +G     +L   +      F+ F   G ++
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWR--VVGYGLGFVLVVCMGAVLGGFVDFWKVGVIT 117


>gi|51101190|ref|YP_063358.1| NADH dehydrogenase subunit 6 [Acanthogobius hasta]
 gi|45685264|gb|AAS75391.1| NADH dehydrogenase subunit 6 [Acanthogobius hasta]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y+F    I+    V +  +P ++   L+       G+ +  GA F++++  ++Y+G ++V
Sbjct: 6   YIFLLGLILGMVAVASNPSPFFAALGLVVVSGMGCGVLVGHGAPFLSLVLFLIYLGGMLV 65

Query: 69  FFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            F +   +  D   E    R+     GS  +  L    + C  
Sbjct: 66  VFAYSAALAADPCPEGLGSREVAINAGSCVVASLVGGGLFCGL 108


>gi|161561793|ref|YP_001586270.1| NADH dehydrogenase subunit 6 [Tachybaptus novaehollandiae]
 gi|143024869|gb|ABO93134.1| NADH dehydrogenase subunit 6 [Tachybaptus novaehollandiae]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LGA FV+++  +VY+G
Sbjct: 2  AYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGASFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|281308306|gb|ADA58301.1| NADH dehydrogenase subunit 6 [Buteo ridgwayi]
 gi|281308308|gb|ADA58302.1| NADH dehydrogenase subunit 6 [Buteo ridgwayi]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   +   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|5081431|gb|AAD39378.1|AF123898_1 NADH dehydrogenase subunit 6 [Grus paradisea]
 gi|224504036|gb|ACN53617.1| NADH dehydrogenase subunit 6 [Grus paradisea]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|16797944|gb|AAL29224.1| NADH dehydrogenase subunit 6 [Tringa nebularia]
          Length = 173

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A    +    G  FI
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFI 95


>gi|18077894|ref|NP_542241.1| NADH dehydrogenase subunit 6 [Tachyglossus aculeatus]
 gi|75054233|sp|Q8W9G2|NU6M_TACAC RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|17932776|emb|CAC88021.1| NADH dehydrogenase subunit 6 [Tachyglossus aculeatus]
          Length = 166

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F YL S M ++S     +  +PIY   SL+ +     G+ + LG  F+ +I  +VY+G +
Sbjct: 4   FIYLLSVMLVLSFMAFASNPSPIYGGLSLVLSGGVGCGIIVSLGGSFLGLIVFLVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           +V F +   M   +              +  +G+L    
Sbjct: 64  LVVFGYTAAMATEEYPETWVDYTVVLNLAIMVGMLGVVW 102


>gi|257053289|ref|YP_003131122.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Halorhabdus
           utahensis DSM 12940]
 gi|256692052|gb|ACV12389.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Halorhabdus
           utahensis DSM 12940]
          Length = 182

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 41/94 (43%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            +  +   V  R+ + S+ SL  A V  A  F L GA   A+   VV  G V V FL +I
Sbjct: 12  TVGLALSAVAARDFLVSILSLSGASVALAVYFYLAGAPIAAVFEAVVAAGLVTVLFLLMI 71

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
            + D +      ++K   +G     +L   L+V 
Sbjct: 72  SLTDAETATLIEQRKLPIVGLALGALLGVGLVVW 105


>gi|21449927|ref|NP_659247.1| NADH dehydrogenase subunit 6 [Arctocephalus forsteri]
 gi|115494829|ref|YP_778758.1| NADH dehydrogenase subunit 6 [Arctocephalus townsendi]
 gi|21397139|gb|AAM51818.1|AF513820_12 NADH dehydrogenase subunit 6 [Arctocephalus forsteri]
 gi|115344897|emb|CAJ56947.1| NADH dehydrogenase subunit 6 [Arctocephalus townsendi]
          Length = 175

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + F ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIAGLLSELLLAC 105


>gi|299889186|dbj|BAJ10303.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
 gi|299889187|dbj|BAJ10304.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
 gi|299889190|dbj|BAJ10306.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
 gi|299889191|dbj|BAJ10307.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
 gi|299889194|dbj|BAJ10309.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
 gi|299889195|dbj|BAJ10310.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis]
          Length = 175

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGSWR 86


>gi|115494577|ref|YP_778706.1| NADH dehydrogenase subunit 6 [Zalophus californianus]
 gi|115344841|emb|CAJ56895.1| NADH dehydrogenase subunit 6 [Zalophus californianus]
          Length = 175

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + F ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIAGLLSELLLAC 105


>gi|19343500|ref|NP_597966.1| NADH dehydrogenase subunit 6 [Ursus americanus]
 gi|19110556|gb|AAL85166.1|AF303109_12 NADH dehydrogenase subunit 6 [Ursus americanus]
          Length = 175

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVVFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A     +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEA-WVSNKAVLGAFIVGLLSELLIAC 105


>gi|126792895|gb|ABO27303.1| NADH dehydrogenase subunit 6 [Cyanopsitta spixii]
 gi|126792898|gb|ABO27305.1| NADH dehydrogenase subunit 6 [Cyanopsitta spixii]
          Length = 170

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 45/108 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G
Sbjct: 2   TYFLVFLGISLVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F++ + +                    F+      ++     +
Sbjct: 62  GMLVVFVYSVSLAADPFPQVWGGWHAVGYVLGFVPAGVGFVVWGWGGW 109


>gi|164449776|ref|YP_001648818.1| NADH dehydrogenase subunit 6 [Acrocephalus scirpaceus]
 gi|164414692|emb|CAP10120.1| NADH dehydrogenase subunit 6 [Acrocephalus scirpaceus]
          Length = 172

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 2/105 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F        ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLGTCFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVGLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +V F++ + +        E     G +G  F   L   + V    
Sbjct: 64  LVVFVYSVSLAA--DPYPEAWTDWGVVGYGFGMGLVIVVGVAMGG 106


>gi|331087471|gb|AEC53548.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 36/70 (51%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4  FVLFLGVCFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|164421068|ref|YP_001648434.1| NADH dehydrogenase subunit 6 [Odontobutis platycephala]
 gi|62902043|gb|AAY18982.1| NADH dehydrogenase subunit 6 [Odontobutis platycephala]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M  + F   S + I     VV+  +P ++   L+ A     GL +  GA F++++  ++Y
Sbjct: 1  MSYIMFIFMSGL-IGGLVGVVSNPSPYFAAVGLVVASGAGCGLLVGHGAPFLSLVLFLIY 59

Query: 63 VGAVIVFFLF 72
          +G ++V F +
Sbjct: 60 LGGMLVVFAY 69


>gi|115494661|ref|YP_778771.1| NADH dehydrogenase subunit 6 [Monachus schauinslandi]
 gi|115344911|emb|CAJ56960.1| NADH dehydrogenase subunit 6 [Monachus schauinslandi]
          Length = 175

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYVVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+VC
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIMGLLSELLLVC 105


>gi|5081429|gb|AAD39377.1|AF123897_1 NADH dehydrogenase subunit 6 [Grus virgo]
 gi|224504050|gb|ACN53630.1| NADH dehydrogenase subunit 6 [Grus virgo]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|313672492|ref|YP_004050603.1| multicomponent na+-h+ antiporter subunit a [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939248|gb|ADR18440.1| putative multicomponent Na+-H+ antiporter subunit A
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 176

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  +   LF    IIS+FL V  ++ + S  +L       A L+  L A  VA   + V 
Sbjct: 1   MTVIIDILFLTFLIISAFLSVYFKDLLNSTIALSAYSFFVAVLWTTLNAVDVAFTEVAVG 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            G   V  L ++  +D  +E  +  K R  +    + +    L++   +   F   G ++
Sbjct: 61  AGVSTVLLLAVLSKID-RVEKNQVTKDRKIIALTVVFMTGYLLLLATQDMPNFGDPGWVT 119

Query: 123 RL 124
             
Sbjct: 120 NT 121


>gi|5081433|gb|AAD39379.1|AF123899_1 NADH dehydrogenase subunit 6 [Grus carunculatus]
 gi|224504022|gb|ACN53604.1| NADH dehydrogenase subunit 6 [Grus carunculatus]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|296099582|gb|ADG95190.1| NADH dehydrogenase subunit 6 [Polypterus bichir lapradei]
          Length = 167

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 50/112 (44%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS + +IS   V +  +P ++ F L+       G+ +  G  F++MI  ++Y+G 
Sbjct: 2   VLMVVFSVIFLISLIAVASNPSPYFAAFGLMVGAGAGCGMLMQCGMTFLSMILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           ++V F +   +       A    +       ++ ++    +V   +F VF +
Sbjct: 62  MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVLLIVGVWVVFVGDFEVFDS 113


>gi|5835510|ref|NP_007535.1|ND6_13719 NADH dehydrogenase subunit 6 [Rhea americana]
 gi|3282077|emb|CAA76512.1| nicotinamide adenine dinucleotide dehydrogenase subunit 6 [Rhea
          americana]
          Length = 174

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 40/87 (45%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M S F +      I+ +  V +  +P Y +  L+   +   G  L LG  F++++  +VY
Sbjct: 1  MTSYFVFFMGVSFILGALAVASNPSPYYGLLGLVVGSLVGCGWLLSLGVSFISLVLFLVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89
          +G ++V F++ + +       A    +
Sbjct: 61 LGGMLVVFVYSVSLAADPFPEAWGDWR 87


>gi|161561807|ref|YP_001586121.1| NADH dehydrogenase subunit 6 [Phoenicopterus ruber roseus]
 gi|143024707|gb|ABO93082.1| NADH dehydrogenase subunit 6 [Phoenicopterus ruber roseus]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + 
Sbjct: 13  VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           +        E     G +G     +L   + V A   +
Sbjct: 73  LAA--DPFPEAWGDWGVMGYAMGLLLVLGIGVVAGGLV 108


>gi|2459601|gb|AAB71752.1| NADH dehydrogenase subunit 6 [Chrysococcyx klaas]
          Length = 151

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +  +P Y V  L+ A V   G  L LG  FV+++  ++Y+G ++V F++ + 
Sbjct: 4   VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMIYLGGMLVVFVYSVS 63

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +       A         G   I ++A  +I+
Sbjct: 64  LAADPFPEAWGNWWVXGYGVGLILVVAVGVII 95


>gi|16357106|ref|NP_443474.1| NADH dehydrogenase subunit 6 [Ateleopus japonicus]
 gi|16266800|dbj|BAB69999.1| NADH dehydrogenase subunit 6 [Ateleopus japonicus]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   +LF F  I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G
Sbjct: 2   TYLMFLFLFGLIVGLVGVASNPAPYFAALGLVLAAGCGCGILVGFGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +  +   E    R   G++  + +G+L        S +
Sbjct: 62  GMLVVFAYSAALAAEPFPETWGDRSVLGYVAIYLLGVLFFSTWFWGSWY 110


>gi|162951844|ref|YP_001621414.1| NADH dehydrogenase subunit 6 [Debaryomyces hansenii]
 gi|215275691|sp|A9RAG2|NU6M_DEBHA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|98283725|gb|ABF58063.1| NADH dehydrogenase subunit 6 [Debaryomyces hansenii]
          Length = 146

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           +SS   + +  P+ S+  L+  FV+ A      G   + M+ + +YVGA+ +      + 
Sbjct: 7   MSSLTAIGMLTPVQSMTCLMILFVSTAMCLYSQGFVLMGMLYVTMYVGAMAM------LF 60

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
           L +   +      +G +    + +LA  L+     +  +    ++  +  +   +  +G 
Sbjct: 61  LFMLSLLKMEYTPQGTITPLMVTLLAMCLMPLDITYETYGMVTQMENVTDE---LVMVGN 117

Query: 137 VLYTQY 142
            LYT+Y
Sbjct: 118 QLYTEY 123


>gi|76009080|gb|ABA39002.1| NADH dehydrogenase subunit 6 [Leucopternis schistaceus]
 gi|281308368|gb|ADA58332.1| NADH dehydrogenase subunit 6 [Leucopternis schistaceus]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|157488889|gb|ABV57848.1| NADH dehydrogenase subunit 6 [Sternula antillarum]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|254471972|ref|ZP_05085373.1| pH adaption potassium efflux system protein PhaA [Pseudovibrio sp.
           JE062]
 gi|211959174|gb|EEA94373.1| pH adaption potassium efflux system protein PhaA [Pseudovibrio sp.
           JE062]
          Length = 782

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 3/106 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +  + +A+I  + V+T R  + ++  L       A ++LL GA  ++    +V   +V++
Sbjct: 608 WFIAAIAVIGVYAVLTARYRVTAIVLLGIQGFAVALIYLLFGAPDLSFTQFMVETLSVVI 667

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
                ++M  ++++  + R  RG      I +L    I      +V
Sbjct: 668 L---ALVMTRLNLKPTDARSSRGKAFDISIAVLCGAGISMLLMSIV 710


>gi|1171834|sp|P43192|NU6M_ALLAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394652|emb|CAA52120.1| NADH dehydrogenase subunit 6 [Alle alle]
 gi|21103999|emb|CAC80347.1| NADH dehydrogenase subunit 6 [Alle alle]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A +   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|281308252|gb|ADA58274.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus]
 gi|281308254|gb|ADA58275.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus]
 gi|281308256|gb|ADA58276.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus]
 gi|281308320|gb|ADA58308.1| NADH dehydrogenase subunit 6 [Buteogallus subtilis]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|242610529|ref|YP_003001994.1| NADH dehydrogenase subunit 6 [Lophura nycthemera]
 gi|166066500|gb|ABY80757.1| NADH dehydrogenase subunit 6 [Lophura nycthemera]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 43/105 (40%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  F+++   ++Y+G
Sbjct: 2   TYFVIFLGVCFMLGVLGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFISLALFMIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++V F++ + +       A    +    G  F+ ++     +  
Sbjct: 62  GMLVVFVYSVALAADPYPEAWGDWRVVGYGLGFVLVVCVGAFLAG 106


>gi|154125715|ref|YP_001382258.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
 gi|151327685|gb|ABS00283.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
 gi|189342984|gb|ACD92015.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
 gi|189342998|gb|ACD92028.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
 gi|198387241|gb|ACH87083.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
 gi|291464811|gb|ADE05889.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2  TYFVFFLGICFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR 86


>gi|29569580|gb|AAO85258.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga urubitinga]
 gi|76009060|gb|ABA38992.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga]
 gi|281308326|gb|ADA58311.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|3600008|gb|AAC35512.1| NADH dehydrogenase subunit VI [Rhea americana]
          Length = 175

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 40/87 (45%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M S F +      I+ +  V +  +P Y +  L+   +   G  L LG  F++++  +VY
Sbjct: 2  MTSYFVFFMGVSFILGALAVASNPSPYYGLLGLVVGSLVGCGWLLSLGVSFISLVLFLVY 61

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89
          +G ++V F++ + +       A    +
Sbjct: 62 LGGMLVVFVYSVSLAADPFPEAWGDWR 88


>gi|115494843|ref|YP_778745.1| NADH dehydrogenase subunit 6 [Neophoca cinerea]
 gi|115344883|emb|CAJ56934.1| NADH dehydrogenase subunit 6 [Neophoca cinerea]
          Length = 175

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + F ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYFVFILSIVFVIGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIAGLLSELLLAC 105


>gi|14141904|ref|NP_115427.1| NADH dehydrogenase subunit 6 [Pterocnemia pennata]
 gi|14039536|gb|AAK53280.1|AF338709_13 NADH dehydrogenase subunit VI [Pterocnemia pennata]
          Length = 174

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 40/87 (45%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M S F +      ++ +  V +  +P Y +  L+   +   G  L LG  F++++  +VY
Sbjct: 1  MTSYFVFFMGLSFVLGALAVASNPSPYYGLLGLVVGSLVGCGWLLSLGVSFISLVLFLVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89
          +G ++V F++ + +       A    +
Sbjct: 61 LGGMLVVFVYSVSLAADPFPEAWGDWR 87


>gi|331087469|gb|AEC53547.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 36/70 (51%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4  FVLFLGVCFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|213136135|gb|ACJ43685.1| NADH dehydrogenase subunit 6 [Mertensiella caucasica]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P Y+ F L+ A  +   L + LG  F+++I ++VY+G ++V F +           
Sbjct: 21  SNPSPYYAAFGLVLASFSGCCLLVELGVCFLSLILVLVYMGGMMVVFAYAASFSAEPFPE 80

Query: 84  AEPRKK-RGFLGSFFIGILAAELIVCASNFMV 114
           A        ++  +F+ I    + +  SNF V
Sbjct: 81  AWGSWSVLAYMTKYFVIISLVGVWLLNSNFSV 112


>gi|310007457|gb|ADP00770.1| NADH dehydrogenase subunit 6 [Morone americana]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 4/157 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+  +  F+L  F  ++S   V    +P Y  F L+        + +  G  FVA+I ++
Sbjct: 1   MITYAACFFLVGF--VLSMVAVACNPSPFYGSFGLVAVAGFGCAVVIGFGGVFVALILVM 58

Query: 61  VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE- 118
           +YVGA++V F++   +  D   E        G  G +F+G++AA        + +     
Sbjct: 59  IYVGAMLVVFVYSAALAADRYPESWGSGSVAGQAGGYFLGLMAAFSFFWKEEYGILGGPL 118

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155
           G +     +  ++  +  +  +  A  +  +G +LL 
Sbjct: 119 GSVEEWASQRGDISGVSWMYSSGGALLVISAGALLLT 155


>gi|76009038|gb|ABA38981.1| NADH dehydrogenase subunit 6 [Leucopternis lacernulatus]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|262200681|ref|YP_003271889.1| NADH/Ubiquinone/plastoquinone (complex I) [Gordonia bronchialis DSM
           43247]
 gi|262084028|gb|ACY19996.1| NADH/Ubiquinone/plastoquinone (complex I) [Gordonia bronchialis DSM
           43247]
          Length = 950

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 3/108 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y+   + I S+ +   +RN +     +         LF L GA  +A+   +V     + 
Sbjct: 582 YVIGGIMIASALVATVLRNRLAGALIVGVTGYGCGMLFALYGAPDLALTQFLV---ETLT 638

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
             +F++++  +  E               IG+    ++V    F   +
Sbjct: 639 LVIFVLVLRKLPAEPEPRHSTGFKPLRALIGVAFGIMLVTIGLFAAAA 686


>gi|108793517|ref|YP_637113.1| NADH dehydrogenase subunit 6 [Podiceps cristatus]
 gi|108755535|dbj|BAE95766.1| NADH dehydrogenase subunit 6 [Podiceps cristatus]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LGA FV+++  +VY+G
Sbjct: 2  AYFVIFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGASFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|40388207|gb|AAQ91105.1| NADH dehydrogenase subunit 6 [Acanthisitta chloris]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F    S   I+    V +  +P Y V  L+   V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLSLCFILGGLAVASSPSPYYGVVGLVLGAVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|5834979|ref|NP_008132.1|ND6_10421 NADH dehydrogenase subunit 6 [Paracentrotus lividus]
 gi|128819|sp|P12777|NU6M_PARLI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|854697|gb|AAA68144.1| NADH dehydrogenase subunit 6 [Paracentrotus lividus]
          Length = 160

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          +  YL   + +  S LV    +P YS   L+   ++   +   LG  FVA++ ++VY+G 
Sbjct: 1  MALYLILVLMLFGSTLVFYSLSPYYSALGLVVVSISGCIILSFLGGSFVALVLVLVYMGG 60

Query: 66 VIVFFLF 72
          ++V F +
Sbjct: 61 MLVVFAY 67


>gi|37496445|emb|CAD21984.1| NADH dehydrogenase subunit 6 [Procavia capensis]
          Length = 179

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 1/101 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++      +  +PI+     I +    +GL +  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSVVFVLGFVGFSSKPSPIFGGLVFIVSGGVGSGLIVSSGGSFLGVVMFLIYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            F +   M   +   +       F GS F+G+L   L+V  
Sbjct: 66  VFGYTTAMATEEYPESWVSNWVVF-GSLFLGVLFEVLVVIW 105


>gi|281308328|gb|ADA58312.1| NADH dehydrogenase subunit 6 [Geranospiza caerulescens]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|281308240|gb|ADA58268.1| NADH dehydrogenase subunit 6 [Buteogallus aequinoctialis]
 gi|281308242|gb|ADA58269.1| NADH dehydrogenase subunit 6 [Buteogallus aequinoctialis]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|16357120|ref|NP_443487.1| NADH dehydrogenase subunit 6 [Ijimaia dofleini]
 gi|16266815|dbj|BAB70012.1| NADH dehydrogenase subunit 6 [Ijimaia dofleini]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 48/109 (44%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   +LF    I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G
Sbjct: 2   TYLMFLFLLGLIVGLVGVASNPAPYFAALGLVLAAGCGCGILVGFGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +  +   E    R   G++  + +G+L   +    + +
Sbjct: 62  GMLVVFAYSAALAAEPFPETWGDRSVLGYVAIYLMGLLFFSVWFWGAWY 110


>gi|331746935|ref|YP_004425083.1| NADH dehydrogenase subunit 6 [Anas formosa]
 gi|330369642|gb|AEC12187.1| NADH dehydrogenase subunit 6 [Anas formosa]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2  TYFVFFLGICFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR 86


>gi|296099568|gb|ADG95177.1| NADH dehydrogenase subunit 6 [Polypterus bichir bichir]
          Length = 167

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 49/112 (43%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS + + S   V +  +P ++ F L+       G+ +  G  F++MI  ++Y+G 
Sbjct: 2   VLMVVFSVIFLFSLIAVASNPSPYFAAFGLMVGAGAGCGMLMQCGMTFLSMILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           ++V F +   +       A    +       ++ ++    +V   +F VF +
Sbjct: 62  MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVLLIVGVWVVFVGDFEVFDS 113


>gi|5835945|ref|NP_008711.1|ND6_15091 NADH dehydrogenase subunit 6 [Aythya americana]
 gi|4887672|gb|AAD32264.1|AF090337_13 NADH dehydrogenase subunit 6 [Aythya americana]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2  TYFVFFLGVCFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR 86


>gi|11643425|gb|AAG39573.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S    +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +        E     G +G  F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120


>gi|16797929|gb|AAL29217.1| NADH dehydrogenase subunit 6 [Recurvirostra avosetta]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A         G  FI
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGSWGVVGYGLGFI 95


>gi|11643283|gb|AAG39502.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S   ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGWGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +       A         G F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYSVSLAADPYPEAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120


>gi|108793432|ref|YP_636891.1| NADH dehydrogenase subunit 6 [Sirembo imberbis]
 gi|25005535|dbj|BAC23201.1| NADH dehydrogenase subunit 6 [Sirembo imberbis]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
              ++F +  +I    V +  +P ++ F L+     ++GL +  G  F +++  ++Y+G 
Sbjct: 3   FMMWVFLYGLVIGMAGVASNPSPYFAAFGLVVVAGMSSGLLVSYGGSFFSLVLFLIYLGG 62

Query: 66  VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           ++V F +   +  +   E    R   G++ ++  G+L A  +   + +
Sbjct: 63  MLVVFAYCAALAAEPYPESWGSRSVLGYVMAYLGGVLLAVKVWGGAWY 110


>gi|25057240|ref|NP_740177.1| NADH dehydrogenase subunit 6 [Rhyacichthys aspro]
 gi|25006206|dbj|BAC23811.1| NADH dehydrogenase subunit 6 [Rhyacichthys aspro]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F F  I+    V +  +P ++   L+       G+ +  GA F++++  ++Y+G ++V 
Sbjct: 7   VFMFGLIMGLVAVASNPSPYFAALGLVVVSGMGCGVLVGHGAPFLSLVLFLIYLGGMLVV 66

Query: 70  FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +  +   E    R     +G +  G+L A        F
Sbjct: 67  FAYSAALAAEPYPETLGSRAVALNVGMYLAGVLVAASFFWGGWF 110


>gi|76009040|gb|ABA38982.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus]
 gi|76009042|gb|ABA38983.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus]
 gi|281308334|gb|ADA58315.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|329896272|ref|ZP_08271428.1| Na+/H+ antiporter MnhB subunit-related protein [gamma
           proteobacterium IMCC3088]
 gi|328921877|gb|EGG29245.1| Na+/H+ antiporter MnhB subunit-related protein [gamma
           proteobacterium IMCC3088]
          Length = 324

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M ++F      + +I++  V+   N   +V  +    +  A  F LL A  VA+    V 
Sbjct: 1   MTAVFSIFLLSLLVITAGAVIRATNLFVAVMLMSIFSLLIAVSFFLLDAADVALTEAAVG 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            G   V FL  +  L  +       +    +     GIL A   +   +F   SA  
Sbjct: 61  AGISTVLFLSALAALTEEERKQTSGRIAALISVSITGILIAYATLYKPDFGDPSAPA 117


>gi|281308340|gb|ADA58318.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus solitarius]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|331087464|gb|AEC53545.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus]
 gi|331087467|gb|AEC53546.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 36/70 (51%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        ++    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4  FVLFLGVCFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|120586750|ref|YP_961406.1| NADH dehydrogenase subunit 6 [Elaphodus cephalophus]
 gi|111380732|gb|ABH09747.1| NADH dehydrogenase subunit 6 [Elaphodus cephalophus]
          Length = 175

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   ++V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFITGLLMEAMMV 104


>gi|256393975|ref|YP_003115539.1| hypothetical protein Caci_4837 [Catenulispora acidiphila DSM
          44928]
 gi|256360201|gb|ACU73698.1| conserved hypothetical protein [Catenulispora acidiphila DSM
          44928]
          Length = 93

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M +  L  YL   + +  + LVV +RN   +V +L       + LF++LGA   A   +V
Sbjct: 1  MTVFWLMDYLLLALTLGCAVLVVRLRNLSGAVMALSAVGAFLSLLFVVLGAPDDAHSEIV 60

Query: 61 VYVGAVIVFFLFII 74
          V   A+ V +L  I
Sbjct: 61 VGSIALPVLYLVAI 74


>gi|322422853|ref|YP_004222722.1| NADH dehydrogenase subunit 6 [Leiothrix argentauris]
 gi|316891659|gb|ADU57270.1| NADH dehydrogenase subunit 6 [Leiothrix argentauris]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  L     ++    V +  +P Y V  L+ A +   G  + LGA FV+++ L+VY+G +
Sbjct: 4   FVLLMGLFFVLGGLAVSSNPSPYYGVVGLVVASIAGCGWLVSLGASFVSLVLLMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAE 104
           +V F++ + +       A         GF  S  +G+  A 
Sbjct: 64  LVVFVYSVSLAADPYPEAWGDWGVVGYGFGMSLVVGVGLAL 104


>gi|13508747|emb|CAC35123.1| NADH dehydrogenase subunit 6 [Muscicapa striata]
 gi|14268494|emb|CAC39396.1| NADH dehydrogenase subunit 6 [Muscicapa striata]
          Length = 172

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M  + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MHFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84
          +G ++V F++ + +       A
Sbjct: 60 LGGMLVVFVYSVALAAEPYPEA 81


>gi|83309070|ref|YP_423948.1| NADH dehydrogenase subunit 6 [Cathartes aura]
 gi|38373484|gb|AAR19060.1| NADH dehydrogenase subunit 6 [Cathartes aura]
          Length = 173

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 40/85 (47%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVFFLGVCFVLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A   ++
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDRR 86


>gi|189095485|ref|YP_001936644.1| NADH dehydrogenase subunit 6 [Lophura ignita]
 gi|171702231|dbj|BAG16260.1| NADH dehydrogenase subunit 6 [Lophura ignita]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  F+++   ++Y+G
Sbjct: 2   TYFVIFLGVCFMLGVLGVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLALFMIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++V F++ + +       A    +    G  F+ ++    ++  
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCVGAVLAG 106


>gi|37596483|gb|AAQ95002.1| NADH dehydrogenase subunit 6 [Anomalospiza imberbis]
          Length = 159

 Score = 39.6 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 36/70 (51%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G +
Sbjct: 4  FVLFLGLCFVLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|215399152|ref|YP_002332282.1| NADH dehydrogenase subunit 6 [Podarcis muralis]
 gi|62900869|gb|AAY18758.1| NADH dehydrogenase subunit 6 [Podarcis muralis]
 gi|213983300|gb|ACJ54983.1| NADH dehydrogenase subunit 6 [Podarcis muralis]
          Length = 171

 Score = 39.6 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 +IS   V +  +P +   +L+       G+ +LLG+ FV+++ L++Y+G ++V 
Sbjct: 7   FLVVCLVISLIGVASNPSPYFGAGNLVVGASLGCGILILLGSSFVSLVLLLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           F + +  L  D       K  G+ G + + +L   ++     F+     G
Sbjct: 67  FAYSV-ALASDPFPEMWGKVGGYFGGYVVLVLFLIMMFSEGAFISLGVSG 115


>gi|115494689|ref|YP_778693.1| NADH dehydrogenase subunit 6 [Callorhinus ursinus]
 gi|115344827|emb|CAJ56882.1| NADH dehydrogenase subunit 6 [Callorhinus ursinus]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + F ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIAGLLSELLLAC 105


>gi|76009032|gb|ABA38978.1| NADH dehydrogenase subunit 6 [Buteo leucorrhous]
          Length = 172

 Score = 39.6 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   +   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|224503994|gb|ACN53578.1| NADH dehydrogenase subunit 6 [Balearica regulorum]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 41/94 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A    +     + FI
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVMGYTAGFI 95


>gi|5081427|gb|AAD39376.1|AF123896_1 NADH dehydrogenase subunit 6 [Balearica regulorum]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 41/94 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A    +     + FI
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVMGYTAGFI 95


>gi|195182432|emb|CAQ68480.1| NADH dehydrogenase subunit 6 [Tremarctos ornatus]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +P+Y    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MVTYTVFILSVVFVMGFVGFSSKPSPVYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G+L+  L+VC
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIAGLLSELLVVC 105


>gi|21449971|ref|NP_659348.1| NADH dehydrogenase subunit 6 [Odobenus rosmarus rosmarus]
 gi|21425422|emb|CAD21717.1| NADH dehydrogenase subunit 6 [Odobenus rosmarus rosmarus]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVIGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLAC 105


>gi|148292254|dbj|BAF62958.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|148292268|dbj|BAF62971.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
 gi|150372667|dbj|BAF66130.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   F ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLAC 105


>gi|89255434|ref|YP_514603.1| NADH dehydrogenase subunit 6 [Menura novaehollandiae]
 gi|42494924|gb|AAS17746.1| NADH dehydrogenase subunit 6 [Menura novaehollandiae]
          Length = 172

 Score = 39.6 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + + 
Sbjct: 15  GGLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLA 74

Query: 78  DIDIEVAEPRKK-----RGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
                 +    +      G      IG++ + L  C       +  G LS
Sbjct: 75  ADPFPKSWGDWRVAGYGVGLGLVVIIGVVLSGLFGCWLGVDTVNNVGILS 124


>gi|16797946|gb|AAL29225.1| NADH dehydrogenase subunit 6 [Charadrius alexandrinus]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  F++++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFISLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|319947846|ref|ZP_08022034.1| hypothetical protein ES5_00922 [Dietzia cinnamea P4]
 gi|319438491|gb|EFV93423.1| hypothetical protein ES5_00922 [Dietzia cinnamea P4]
          Length = 187

 Score = 39.6 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 52/111 (46%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F++ + +A+ +   V  V +   + ++L  +F+    + LLLG  ++ +IT+++ V  
Sbjct: 5   IVFWVLAVVAVTAGTAVFVVDSMARATYALAASFIAVGVMILLLGQSYLGIITILMMVME 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           + V  ++++M + ++  +       G   +    +    L+   +  + + 
Sbjct: 65  MAVMAVYMVMFMGMNPALMPMDMTHGKKTAIGTSVGVFVLLAAGALLIPWP 115


>gi|195661154|ref|YP_002117891.1| NADH dehydrogenase subunit 6 [Epinephelus akaara]
 gi|153973795|gb|ABS54460.1| NADH dehydrogenase subunit 6 [Epinephelus akaara]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M    + F +     I+ +  V +  +P +    L+       G F+  G+ F+A+I  +
Sbjct: 1  MCFTVICFLIC---WIVGAIAVASNPSPFFGALGLVMVAGVGCGFFVEFGSPFLALILFL 57

Query: 61 VYVGAVIVFFLF 72
          +Y+G ++V F +
Sbjct: 58 IYLGGMLVVFAY 69


>gi|14142007|ref|NP_115387.1|ND6_15668 NADH dehydrogenase subunit 6 [Dogania subplana]
 gi|14030549|gb|AAK52953.1|AF366350_12 NADH dehydrogenase subunit 6 [Dogania subplana]
          Length = 174

 Score = 39.6 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 48/109 (44%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            F +LF    I     V +  +P Y V  L+F  V  + + + LG  F++++  ++Y+G 
Sbjct: 3   FFMFLFEVCFIFWVVGVASGPSPYYGVVGLVFGAVFGSLMLVGLGGSFISLVLFLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           ++V F + + +       A       F    ++ ++    + C S + +
Sbjct: 63  MLVVFAYSVALTGDPYPSAWRSYGDLFCMVGYVLLVIGAAMFCFSVWSL 111


>gi|312233191|ref|YP_004021415.1| NADH dehydrogenase subunit 6 [Phalacrocorax chalconotus]
 gi|312233192|ref|YP_004021416.1| NADH dehydrogenase subunit 6 [Phalacrocorax chalconotus]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGVSFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|238550675|gb|ACR44520.1| NADH dehydrogenase subunit 6 [Chrysolophus amherstiae]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 44/105 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  F+++   +VY+G
Sbjct: 2   TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++V F++ + +       A    +    G  F+ ++   + +  
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCVGVFLAG 106


>gi|5834869|ref|NP_006939.1|ND6_10018 NADH dehydrogenase subunit 6 [Phoca vitulina]
 gi|128820|sp|Q00543|NU6M_PHOVI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|13443|emb|CAA45268.1| NADH dehydrogenase subunit 6 [Phoca vitulina]
 gi|115345051|emb|CAJ57090.1| NADH dehydrogenase subunit 6 [Phoca vitulina]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +    + I+         +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYT-TAMAIEQYPEVWVSNKAVLGAFVMGLLSELLLAC 105


>gi|295641241|gb|ADG22779.1| NADH dehydrogenase subunit 6 [Arctonyx collaris]
          Length = 177

 Score = 39.6 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLMAC 105


>gi|255644079|gb|ACU22483.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644103|gb|ACU22501.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644107|gb|ACU22504.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644119|gb|ACU22513.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644123|gb|ACU22516.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644131|gb|ACU22522.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644179|gb|ACU22558.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    +V ++N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVVLSTNL 109


>gi|11643237|gb|AAG39479.1| NADH dehydrogenase subunit 6 [Phylloscopus nitidus]
 gi|11643239|gb|AAG39480.1| NADH dehydrogenase subunit 6 [Phylloscopus nitidus]
          Length = 172

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 36/70 (51%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F    S    +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4  FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|55979233|ref|YP_145513.1| NADH dehydrogenase subunit 6 [Asymmetron lucayanum]
 gi|55771048|dbj|BAD72150.1| NADH dehydrogenase subunit 6 [Asymmetron lucayanum]
          Length = 167

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 46/95 (48%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF+F  ++++ +V+  ++P +S  ++    +  +     +   F AMI +++Y+G ++V 
Sbjct: 5   LFNFTILLAAMMVIRAKSPYFSALAMALLALLLSVAMFQMNLIFPAMILMLIYLGGMLVV 64

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104
           F++        I +         + +F  G+LA  
Sbjct: 65  FVYSTAYSADLIPLPMNMTLTLLIATFGTGLLATA 99


>gi|288898401|gb|ADC66711.1| NADH dehydrogenase subunit 6 [Ursus arctos]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  +F  + S + ++      +  +PIY    LI +     G+ L  G  F+ ++  +
Sbjct: 1   MTMYIVF--ILSVVFVMGFVGFSSKPSPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFL 58

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +Y+G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 59  IYLGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLIAC 105


>gi|304322925|ref|YP_003856771.1| NADH dehydrogenase subunit 6 [Lynx rufus]
 gi|262232100|gb|ACY38382.1| NADH dehydrogenase subunit 6 [Lynx rufus]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTIFVVSFVGFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   LG    GILA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGMLITGILAELLTAC 105


>gi|189095527|ref|YP_001936482.1| NADH dehydrogenase subunit 6 [Syrmaticus humiae]
 gi|171702203|dbj|BAG16234.1| NADH dehydrogenase subunit 6 [Syrmaticus humiae]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVSLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++V F++ + +       A    +    G  F+ ++   + +  
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCVGVFLVG 106


>gi|120944014|ref|YP_973113.1| NADH dehydrogenase subunit 6 [Ursus thibetanus mupinensis]
 gi|89112907|gb|ABD61071.1| NADH dehydrogenase subunit 6 [Ursus thibetanus mupinensis]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSIVFVMSFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M+            +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMVTERYPEV-WVSNKAVLGAFIVGLLSELLIAC 105


>gi|122891712|ref|YP_001004163.1| NADH dehydrogenase subunit 6 [Crocodylus siamensis]
 gi|82395897|gb|ABB72524.1| NADH dehydrogenase subunit 6 [Crocodylus porosus]
 gi|84682153|gb|ABC60415.1| NADH dehydrogenase subunit 6 [Crocodylus siamensis]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 44/99 (44%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F+L  F+ ++S  LV +     Y V SL+FA +  +GL +  G  F+ ++ L++Y+G 
Sbjct: 3   ITFFLLCFLMMVSVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104
           ++V F F +   D              L       L   
Sbjct: 63  LLVVFAFCVGFTDDKYCEFWGVGGSKVLAYVCGAGLGIG 101


>gi|5081435|gb|AAD39380.1|AF123900_1 NADH dehydrogenase subunit 6 [Grus leucogeranus]
 gi|224504064|gb|ACN53643.1| NADH dehydrogenase subunit 6 [Grus leucogeranus]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 37/72 (51%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|119360775|ref|YP_913755.1| NADH dehydrogenase subunit 6 [Vaillantella maassi]
 gi|119225483|dbj|BAF41829.1| NADH dehydrogenase subunit 6 [Vaillantella maassi]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 2/116 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            F YL     I+    V +   P ++   L+ A     G+ +  G  F+A+I  ++Y+G 
Sbjct: 3   FFLYLLLVAFIVGLVAVASNPAPYFAALGLVVAAGVGCGVLIEHGGPFLALILFLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           ++V  +F            E    R  +G   + +L   L+        +     +
Sbjct: 63  MLV--VFAYSAALAAEPFPEAWGDRSVIGYVLVYLLGVGLMAGVFWGDWYGGSWSV 116


>gi|19343529|ref|NP_597992.1| NADH dehydrogenase subunit 6 [Ursus maritimus]
 gi|19110585|gb|AAL85193.1|AF303111_13 NADH dehydrogenase subunit 6 [Ursus maritimus]
 gi|21425564|emb|CAD21730.1| NADH dehydrogenase subunit 6 [Ursus maritimus]
 gi|288898373|gb|ADC66685.1| NADH dehydrogenase subunit 6 [Ursus maritimus]
 gi|288898387|gb|ADC66698.1| NADH dehydrogenase subunit 6 [Ursus arctos]
 gi|288898415|gb|ADC66724.1| NADH dehydrogenase subunit 6 [Ursus maritimus]
 gi|288898429|gb|ADC66737.1| NADH dehydrogenase subunit 6 [Ursus arctos]
 gi|288898443|gb|ADC66750.1| NADH dehydrogenase subunit 6 [Ursus maritimus]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  +F  + S + ++      +  +PIY    LI +     G+ L  G  F+ ++  +
Sbjct: 1   MTMYIVF--ILSVVFVMGFVGFSSKPSPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFL 58

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +Y+G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 59  IYLGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLIAC 105


>gi|325126801|ref|YP_004285943.1| NADH dehydrogenase subunit 6 [Pica pica]
 gi|324022989|gb|ADY15553.1| NADH dehydrogenase subunit 6 [Pica pica]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 39/83 (46%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F    S   ++    V +  +P Y V  L+ A +   G  + +G  FV+++ ++VY+G +
Sbjct: 4  FVLFMSLFFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSMGVSFVSLVLVMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F++ + +       +    +
Sbjct: 64 LVVFVYSVSLAADPYPESWGNWR 86


>gi|54112097|ref|YP_122154.1| NADH dehydrogenase subunit 6 [Zaglossus bruijni]
 gi|54019669|emb|CAG26340.1| NADH dehydrogenase subunit 6 [Zaglossus bruijni]
          Length = 166

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F YL S + ++S     +  +PIY   SL+ +     G+ + LG  F+ +I  +VY+G +
Sbjct: 4   FIYLLSIVLVLSFMAFASKPSPIYGGLSLVLSGGVGCGIIVSLGGSFLGLIVFLVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           +V F +   M   +              +  +G+L    
Sbjct: 64  LVVFGYTAAMATEEYPETWVDNTVVLNLAIMMGMLGVVW 102


>gi|76009064|gb|ABA38994.1| NADH dehydrogenase subunit 6 [Geranospiza caerulescens]
          Length = 172

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|108802854|ref|YP_637151.1| NADH dehydrogenase subunit 6 [Crocodylus porosus]
 gi|81295123|emb|CAH18615.1| NADH dehydrogenase subunit 6 [Crocodylus porosus]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 44/99 (44%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F+L  F+ ++S  LV +     Y V SL+FA +  +GL +  G  F+ ++ L++Y+G 
Sbjct: 3   ITFFLLCFLMMVSVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104
           ++V F F +   D              L       L   
Sbjct: 63  LLVVFAFCVGFTDDKYCEFWGAGGSKVLAYVCGAGLGIG 101


>gi|190349341|ref|YP_001974591.1| NADH dehydrogenase subunit 6 [Cairina moschata]
 gi|189343012|gb|ACD92041.1| NADH dehydrogenase subunit 6 [Cairina moschata]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2  TYFVFFLGVCFVLGILGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR 86


>gi|16797940|gb|AAL29222.1| NADH dehydrogenase subunit 6 [Numenius arquata]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLLLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|15866262|gb|AAL10291.1| NADH dehydrogenase subunit 6 [Gracula religiosa intermedia]
          Length = 82

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       I+    V +  +P Y V  L+ A V   G  + LG  FVA++ ++VY
Sbjct: 2  MEFVMF--LGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|253993159|gb|ACT52819.1| NADH dehydrogenase subunit 6 [Philomachus pugnax]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L    +++    V +  +P Y V  L+ A        + LG  FV+++  +VY+G
Sbjct: 2  TYFVLLLGLCSVLGGLAVASNPSPYYGVVGLVLASAAXXXXXISLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A    +    G  FI
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGMGFI 95


>gi|219524269|ref|YP_002456409.1| NADH dehydrogenase subunit 6 [Mitsukurina owstoni]
 gi|169640938|gb|ACA61228.1| NADH dehydrogenase subunit 6 [Mitsukurina owstoni]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +L     I+    V +  +P Y+   L+ A     GL +  G  F+++I  ++Y+G +
Sbjct: 4   FMFLMMICLILGLIGVASNPSPYYAALGLVMAAGVGCGLLVGHGGSFMSLILFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +V F +   +         P     +    ++G     LI  +  FMV
Sbjct: 64  LVVFAYTAAL----AAEPYPESWGNWSVLLYVGFYFMGLIFISKYFMV 107


>gi|195933661|ref|YP_002117956.1| NADH dehydrogenase subunit 6 [Ursus thibetanus thibetanus]
 gi|146221817|gb|ABQ12046.1| NADH dehydrogenase subunit 6 [Ursus thibetanus thibetanus]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  +VY
Sbjct: 1   MMMYIVFILSIVFVMSFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105


>gi|138892893|ref|YP_001127602.1| NADH dehydrogenase subunit 6 [Ursus thibetanus formosanus]
 gi|195933648|ref|YP_002117941.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus]
 gi|117649944|gb|ABK54011.1| NADH dehydrogenase subunit 6 [Ursus thibetanus formosanus]
 gi|148910928|gb|ABR18510.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus]
 gi|151384883|gb|ABS11106.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus]
 gi|195182356|emb|CAQ68415.1| NADH dehydrogenase subunit 6 [Ursus thibetanus]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  +VY
Sbjct: 1   MMMYIVFILSIVFVMSFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105


>gi|227002032|gb|ACP04268.1| NADH dehydrogenase subunit 6 [Phoca largha]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105


>gi|122056419|gb|ABM66076.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056421|gb|ABM66077.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056423|gb|ABM66078.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056425|gb|ABM66079.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056427|gb|ABM66080.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056429|gb|ABM66081.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056431|gb|ABM66082.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056433|gb|ABM66083.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
 gi|122056435|gb|ABM66084.1| NADH dehydrogenase subunit 6 [Cygnus buccinator]
          Length = 172

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 1   AYFMFFLGICFMVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 60

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
            ++V F++ + +       A    +   +G     +    + +    FM
Sbjct: 61  GMLVVFVYSVALAAEPFPEAWGDWR--VIGYAAAFVAVVFVGLVFGGFM 107


>gi|121582428|ref|YP_980242.1| NADH dehydrogenase subunit 6 [Varanus niloticus]
 gi|121309444|dbj|BAF44056.1| NADH dehydrogenase subunit 6 [Varanus niloticus]
          Length = 176

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            ++   LV +  +P++ V SL+     A G  ++ G  F++++  +VY+G ++V F + +
Sbjct: 12  LVVCGLLVGSNPSPLFGVVSLVLLAFVACGFLVMSGYSFLSLVLFLVYLGGMVVVFAYSV 71

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            M        E       +  F  G++    IV  +
Sbjct: 72  SMAS--ELQPEAWLGWSVMPYFLGGLVGVIFIVVVT 105


>gi|108793306|ref|YP_637034.1| NADH dehydrogenase subunit 6 [Dactylopsila trivirgata]
 gi|94481185|dbj|BAE93991.1| NADH dehydrogenase subunit 6 [Dactylopsila trivirgata]
          Length = 167

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +PIY   SL+ +      + + LG  F+ ++  +VY
Sbjct: 1   MEMMVIFLFSVLLIFGFVAFASKPSPIYGGLSLVASGGLGCAMVVSLGDIFLGLVVFMVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M   +   +       F    F  ++       + +  V  A
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNTVAFSMLLFALLVEVAWFFVSDDIEVTVA 115


>gi|327492735|ref|YP_004347624.1| NADH dehydrogenase subunit 6 [Omegophora armilla]
 gi|327392614|dbj|BAK10040.1| NADH dehydrogenase subunit 6 [Omegophora armilla]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 40/109 (36%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    +     V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLVGLVFGLVAVASNPSPYFGALSLVVVAAFGCGILIWHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           F + + +                    + GI+     +       +S E
Sbjct: 67  FAYSVALAAEPYPETLGSWPVLASMLMYFGIVVLFFTLVFGGLGEYSWE 115


>gi|325126828|ref|YP_004285968.1| NADH dehydrogenase subunit 6 [Pennahia argentata]
 gi|324023002|gb|ADY15565.1| NADH dehydrogenase subunit 6 [Pennahia argentata]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF F  ++    V +  +P ++   L+       G+ +  G  F+A++  ++Y+G
Sbjct: 2   TYIMSLFLFGMVLGVVAVASNPSPYFAALGLVAVAGLGCGVLVGYGGHFLAIVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +    G     ++A  + V   + + +    E S +
Sbjct: 62  GMLVVFAYSSAL------AAEPYPESWGSGPVVAHVIAYSVGVALVSGVFWGGWYETSWV 115

Query: 125 VFK 127
              
Sbjct: 116 PVD 118


>gi|166093151|gb|ABY82580.1| NADH dehydrogenase subunit 6 [Tyto alba]
          Length = 172

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 42/85 (49%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F + +    ++   +V +  +P +    L+ A V+     L LGA F+A++  +VY+G
Sbjct: 2  TYFMFFWGASLVLGGLVVASNPSPYFGAVGLVVASVSGCIWLLSLGASFIALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A   ++
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDRR 86


>gi|189095513|ref|YP_001936301.1| NADH dehydrogenase subunit 6 [Syrmaticus ellioti]
 gi|171702189|dbj|BAG16221.1| NADH dehydrogenase subunit 6 [Syrmaticus ellioti]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVSLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++V F++ + +       A    +    G  F+ ++   + +  
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCVGVFLAG 106


>gi|219524144|ref|YP_002456294.1| NADH dehydrogenase subunit 6 [Bambusicola thoracica]
 gi|157678142|gb|ABV60462.1| NADH dehydrogenase subunit 6 [Bambusicola thoracica]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
            ++V F++ + +       A    +   +G     IL   +      F+ F
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWR--VVGYGLGFILVVFVGAVLGGFVDF 110


>gi|154937321|ref|YP_001425584.1| NADH dehydrogenase subunit 6 [Egretta eulophotes]
 gi|154432349|gb|ABS82067.1| NADH dehydrogenase subunit 6 [Egretta eulophotes]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+   +   G  L LG  F++++  +VY+G
Sbjct: 2  TYFVIFLGVCFVLGGLAVASNPSPYYGVVGLVLGSLVGCGWLLSLGVSFISLVLFLVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|115494759|ref|YP_778888.1| NADH dehydrogenase subunit 6 [Phoca largha]
 gi|115345037|emb|CAJ57077.1| NADH dehydrogenase subunit 6 [Phoca largha]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105


>gi|327493043|ref|YP_004347990.1| NADH dehydrogenase subunit 6 [Canthigaster jactator]
 gi|327392264|dbj|BAK09715.1| NADH dehydrogenase subunit 6 [Canthigaster jactator]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 43/108 (39%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLMGLVLGLVAVASNPSPYFGALSLVAVGFFGCGVLVWHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           F +   +                  S ++G+++   +     +  +S 
Sbjct: 67  FAYSAALAAEPYPETLGSWPVLVSMSMYVGVVSLAFVSFLGGWGEYSW 114


>gi|188484473|gb|ACD50862.1| orf37 [Phytophthora ramorum]
          Length = 37

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLI 36
          M  +++FFY FS +A+ S+  V+   N IYS F LI
Sbjct: 1  MNFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLI 36


>gi|322422491|ref|YP_004222069.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|322422492|ref|YP_004222070.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525910|gb|ADW41480.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525911|gb|ADW41481.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525929|gb|ADW41497.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525932|gb|ADW41499.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525935|gb|ADW41501.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525938|gb|ADW41503.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525941|gb|ADW41505.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525958|gb|ADW41516.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525960|gb|ADW41517.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525962|gb|ADW41518.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525964|gb|ADW41519.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
 gi|320525966|gb|ADW41520.1| NADH dehydrogenase subunit 6 [Aceros waldeni]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +      ++    V +  +P Y V  L+ A V   G  L LG  F+A++  +VY+G +
Sbjct: 4  FVFFLGLAFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFIALVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVA 84
          +V F++ + +       A
Sbjct: 64 LVVFVYSVALAADPFPEA 81


>gi|195661267|ref|YP_002117930.1| NADH dehydrogenase subunit 6 [Arctodus simus]
 gi|195182401|emb|CAQ68454.1| NADH dehydrogenase subunit 6 [Arctodus simus]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVVFVMGFVGFSSKPSPIYGGLVLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+VC
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLVVC 105


>gi|115494619|ref|YP_778927.1| NADH dehydrogenase subunit 6 [Pusa hispida]
 gi|115345107|emb|CAJ57142.1| NADH dehydrogenase subunit 6 [Pusa hispida]
          Length = 175

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105


>gi|11643361|gb|AAG39541.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643371|gb|AAG39546.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643379|gb|AAG39550.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643383|gb|AAG39552.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643385|gb|AAG39553.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643387|gb|AAG39554.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643389|gb|AAG39555.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643391|gb|AAG39556.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643393|gb|AAG39557.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643395|gb|AAG39558.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643397|gb|AAG39559.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643399|gb|AAG39560.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643401|gb|AAG39561.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643405|gb|AAG39563.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643407|gb|AAG39564.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643409|gb|AAG39565.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643411|gb|AAG39566.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
 gi|11643415|gb|AAG39568.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643417|gb|AAG39569.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643421|gb|AAG39571.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643423|gb|AAG39572.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643429|gb|AAG39575.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643431|gb|AAG39576.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643433|gb|AAG39577.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643435|gb|AAG39578.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643437|gb|AAG39579.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643439|gb|AAG39580.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643441|gb|AAG39581.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643443|gb|AAG39582.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643445|gb|AAG39583.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643447|gb|AAG39584.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643449|gb|AAG39585.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
 gi|11643451|gb|AAG39586.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus]
 gi|11643453|gb|AAG39587.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus]
 gi|11643455|gb|AAG39588.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus]
 gi|11643457|gb|AAG39589.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus]
 gi|11643459|gb|AAG39590.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus]
          Length = 172

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S    +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +       A         G F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYSVSLAADPYPEAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120


>gi|296099680|gb|ADG95281.1| NADH dehydrogenase subunit 6 [Polypterus palmas buettikoferi]
          Length = 167

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 49/110 (44%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L   +FS + +IS   V +  +P ++ F L+       G+ +  G  F++MI  ++Y+G 
Sbjct: 2   LLMVVFSIIFLISLIAVASNPSPYFAAFGLMVGAGAGCGMLMQCGVTFLSMILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           ++V F +   +       A    +       ++ ++    +V   +F +F
Sbjct: 62  MLVVFAYSAALAAEPYPHAWGSWEVFSYVLGYMFLVIVLWVVFVGDFGLF 111


>gi|317134260|ref|YP_004123199.1| NADH dehydrogenase subunit 6 [Rattus leucopus]
 gi|290573368|gb|ADD46490.1| NADH dehydrogenase subunit 6 [Rattus leucopus]
          Length = 172

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLAGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+  FFI  L  EL+V
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFGFFILGLFMELVV 102


>gi|213136065|gb|ACJ43620.1| NADH dehydrogenase subunit 6 [Echinotriton andersoni]
          Length = 172

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 47/107 (43%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +L   + ++    V +  +P ++ F LI A V    L + LG  F++++  +VY+G ++V
Sbjct: 6   FLSMVVMLVGLVAVASNPSPYFAAFGLILASVGGCCLLVDLGVSFLSLVLFLVYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
            F +   +       A            ++  L A +++   ++ + 
Sbjct: 66  VFAYSASLAAEPYPEAWGSWSVMGYVCVYVAFLVAGVMLFNCSYSIM 112


>gi|16797938|gb|AAL29221.1| NADH dehydrogenase subunit 6 [Limosa lapponica]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        ++    V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+G +
Sbjct: 4  FVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97
          +V F++ + +       A    +    G+ F
Sbjct: 64 LVVFVYSVSLAADPFPEAWGDWRVVGYGAGF 94


>gi|84488606|ref|YP_448944.1| NADH dehydrogenase subunit 6 [Rangifer tarandus]
 gi|84095029|dbj|BAE66698.1| NADH dehydrogenase subunit 6 [Rangifer tarandus]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G+L   ++VC
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFMTGLLMEVVMVC 105


>gi|280978053|ref|YP_003345006.1| NADH dehydrogenase subunit 6 [Pythonichthys microphthalmus]
 gi|271280220|dbj|BAI53170.1| NADH dehydrogenase subunit 6 [Pythonichthys microphthalmus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF  M ++    V +   P ++   L+ A V   G+    G  F++++ L++Y+G +
Sbjct: 4   FLFLFMVMLVLGVLGVASNPAPYFAALGLVLAAVGGCGILAGYGGSFISLVLLLIYLGGM 63

Query: 67  IVFFLF--IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +V F +   +          +       +G  F  +L   L  
Sbjct: 64  LVVFAYSAALAAEPYPEAWGDWSVLGHAVGYLFFCLLGVGLFY 106


>gi|11643473|gb|AAG39597.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 2/105 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S    +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +V F++ + +        E     G +G  F   +   +    S 
Sbjct: 64  LVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGMVIVVGAVVSG 106


>gi|294054917|ref|YP_003548575.1| NADH/Ubiquinone/plastoquinone (complex I) [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614250|gb|ADE54405.1| NADH/Ubiquinone/plastoquinone (complex I) [Coraliomargarita
           akajimensis DSM 45221]
          Length = 777

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
            M +IS+ +VV   +   S+  L       A +F+  GA  +A+  L+V    V V FLF
Sbjct: 612 VMMLISTLVVVASNDFTTSLVGLGMIGFGVALIFVYYGAPDLAITQLLVETLTV-VLFLF 670

Query: 73  IIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNFMVFSAE----GELSRLVFK 127
           ++  L    +++  R + R  + +   G L   L++ A +            + S    K
Sbjct: 671 VVFRLPAMKQLSSSRVRVRDAILALSFGGLMTLLVLKAVSIQFHHPISEQLAQWSYPEAK 730

Query: 128 GNNVENI 134
           G NV N+
Sbjct: 731 GKNVVNV 737


>gi|11643403|gb|AAG39562.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S    +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +       A         G F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYSVSLAADPYPEAWGDWGVVEYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120


>gi|189095611|ref|YP_001936249.1| NADH dehydrogenase subunit 6 [Syrmaticus soemmerringi ijimae]
 gi|171702161|dbj|BAG16195.1| NADH dehydrogenase subunit 6 [Syrmaticus soemmerringi ijimae]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  F+++   +VY+G
Sbjct: 2   TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
            ++V F++ + +       A    +   +G     +L   +    S F+ F
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWR--VVGYGLGFVLVVCVGAFLSGFVDF 110


>gi|16797927|gb|AAL29216.1| NADH dehydrogenase subunit 6 [Numenius madagascariensis]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLLLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|145315426|gb|ABP62987.1| NADH dehydrogenase subunit 6 [Osteolaemus tetraspis]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F++   + +IS  LV       Y V SL+FA +  + L +  G  F+ ++ L++Y+G +
Sbjct: 4   MFFILCCLMMISVVLVAFGATIHYGVVSLLFATMLGSSLLVAEGGSFMPLVVLLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102
           +V F F +   D              L   +   L 
Sbjct: 64  LVVFAFCVGFTDDKYCEFWGSGGSKGLAYIWWAGLG 99


>gi|56548717|ref|YP_161245.1| NADH dehydrogenase subunit 6 [Perameles gunnii]
 gi|56398558|emb|CAG26431.1| NADH dehydrogenase subunit 6 [Perameles gunnii]
          Length = 166

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 7/123 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +P+Y   SL+ +      + + LG  F+ ++  +VY
Sbjct: 1   MKMMIIFLFSVLLIFGFVAFASKPSPVYGGLSLVVSGGVGCAIVVSLGNTFLGLVMFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   M   +           ++G+     +    ++    + + + E E+S
Sbjct: 61  LGGMLVVFGYTAAMATEEYPET-------WVGNMVAFSMFVVTLLIEVVWYITTGEVEMS 113

Query: 123 RLV 125
             V
Sbjct: 114 TAV 116


>gi|5835231|ref|NP_008275.1|ND6_10703 NADH dehydrogenase subunit 6 [Protopterus dolloi]
 gi|1161215|gb|AAC38032.1| NADH dehydrogenase subunit 6 [Protopterus dolloi]
          Length = 170

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S  F+      ++S   V +   P ++   L+F      G+ + LG  F+++I  ++Y+G
Sbjct: 2   SFIFFTLLVGFLVSLIGVASNPAPYFAALGLVFGAGIGCGILIWLGNSFLSLILFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +                     +G            + VF +   L   
Sbjct: 62  GMLVVFGYSAALAAEPYPGGWEDWSVLLYSLLLLGAGVGIGWAVVGGWDVFDSASFLGGT 121

Query: 125 VF 126
           + 
Sbjct: 122 IL 123


>gi|283049341|gb|ADB07114.1| NADH dehydrogenase subunit 6 [Gallus gallus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
            ++V F++ + +       A    +   +G     +L   + V    F+ F
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWR--VVGYGLGFVLVVWMGVVLGGFVDF 110


>gi|188039024|ref|YP_001905907.1| NADH dehydrogenase subunit 6 [Ophiura albida]
 gi|183013991|emb|CAL50584.1| NADH dehydrogenase subunit 6 [Ophiura albida]
          Length = 158

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 39/91 (42%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L   + ++ S ++V   +P + +F ++   +  +      G  F  ++ ++VYVG ++V 
Sbjct: 4   LIVMIILLGSLVLVFSGSPYFGLFGVLIQSIGFSLYLFFCGLPFFGLLMVLVYVGGMMVV 63

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI 100
           FLF  ++           +   F     + +
Sbjct: 64  FLFSTILSAERYPGTSWSEFFVFSLCLILLV 94


>gi|11643461|gb|AAG39591.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643463|gb|AAG39592.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643465|gb|AAG39593.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643467|gb|AAG39594.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643469|gb|AAG39595.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643471|gb|AAG39596.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643475|gb|AAG39598.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643477|gb|AAG39599.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643479|gb|AAG39600.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643481|gb|AAG39601.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643483|gb|AAG39602.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643485|gb|AAG39603.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643487|gb|AAG39604.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643489|gb|AAG39605.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643491|gb|AAG39606.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643493|gb|AAG39607.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643495|gb|AAG39608.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643497|gb|AAG39609.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643499|gb|AAG39610.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643501|gb|AAG39611.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643503|gb|AAG39612.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643505|gb|AAG39613.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643507|gb|AAG39614.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643509|gb|AAG39615.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643511|gb|AAG39616.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643513|gb|AAG39617.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643515|gb|AAG39618.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643517|gb|AAG39619.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643519|gb|AAG39620.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643521|gb|AAG39621.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643523|gb|AAG39622.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643525|gb|AAG39623.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643527|gb|AAG39624.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643529|gb|AAG39625.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643531|gb|AAG39626.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
 gi|11643533|gb|AAG39627.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S    +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +       A         G F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYSVSLAADPYPEAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120


>gi|5835021|ref|NP_007080.1|ND6_10458 NADH dehydrogenase subunit 6 [Halichoerus grypus]
 gi|585600|sp|P38603|NU6M_HALGR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|414769|emb|CAA50888.1| NADH-ubiquinone oxidoreductase subunit 6 [Halichoerus grypus]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105


>gi|291612301|ref|YP_003540733.1| NADH dehydrogenase subunit 6 [Lophophorus lhuysii]
 gi|259019850|gb|ACV90059.1| NADH dehydrogenase subunit 6 [Lophophorus lhuysii]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F     F  ++    V +  +P Y V  L+ A V+  G  + LG  F+++   +VY+G
Sbjct: 2  TYFMIFLGFCFMLGVLAVASNPSPYYGVVGLVLASVDGCGWLVSLGVSFISLALFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|60685824|gb|AAX34926.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685829|gb|AAX34930.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685834|gb|AAX34934.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685839|gb|AAX34938.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685844|gb|AAX34942.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685849|gb|AAX34946.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685854|gb|AAX34950.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685859|gb|AAX34954.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685864|gb|AAX34958.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685869|gb|AAX34962.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685874|gb|AAX34966.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685879|gb|AAX34970.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686214|gb|AAX35238.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686239|gb|AAX35258.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686244|gb|AAX35262.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686249|gb|AAX35266.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686254|gb|AAX35270.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686259|gb|AAX35274.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686264|gb|AAX35278.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686269|gb|AAX35282.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686274|gb|AAX35286.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686279|gb|AAX35290.1| NADH dehydrogenase subunit 6 [Elephas maximus]
          Length = 183

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           VM  + F + S + ++      +  +P+Y   SL+ +     G+ +  G  F+ ++  +V
Sbjct: 8   VMMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMSSGGSFLGLVVFLV 66

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           Y+G ++V F + I M   +            L +F +G+L    +V   
Sbjct: 67  YLGGMMVVFGYTIAMATEEYPETWGSNV-VVLSAFLVGLLMEVFMVVWL 114


>gi|21306216|gb|AAM45914.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
 gi|21306218|gb|AAM45915.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
 gi|21306220|gb|AAM45916.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
 gi|21306222|gb|AAM45917.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
 gi|21306224|gb|AAM45918.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
 gi|21306226|gb|AAM45919.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
          Length = 156

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 1  TYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 60

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A    +    G  FI
Sbjct: 61 GMLVVFVYSVSLAADPFPEAWGDWRVLGYGIGFI 94


>gi|60685279|gb|AAX34490.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685284|gb|AAX34494.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685289|gb|AAX34498.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685294|gb|AAX34502.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685299|gb|AAX34506.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685304|gb|AAX34510.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685309|gb|AAX34514.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685314|gb|AAX34518.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685319|gb|AAX34522.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685324|gb|AAX34526.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685329|gb|AAX34530.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685334|gb|AAX34534.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685339|gb|AAX34538.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685344|gb|AAX34542.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685349|gb|AAX34546.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685354|gb|AAX34550.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685359|gb|AAX34554.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685364|gb|AAX34558.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685369|gb|AAX34562.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685374|gb|AAX34566.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685379|gb|AAX34570.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685384|gb|AAX34574.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685389|gb|AAX34578.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685394|gb|AAX34582.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685399|gb|AAX34586.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685884|gb|AAX34974.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685889|gb|AAX34978.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685894|gb|AAX34982.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685899|gb|AAX34986.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685904|gb|AAX34990.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685909|gb|AAX34994.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685914|gb|AAX34998.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685919|gb|AAX35002.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685924|gb|AAX35006.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685929|gb|AAX35010.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685934|gb|AAX35014.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685939|gb|AAX35018.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685944|gb|AAX35022.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685949|gb|AAX35026.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685954|gb|AAX35030.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685959|gb|AAX35034.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685964|gb|AAX35038.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685969|gb|AAX35042.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685974|gb|AAX35046.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685979|gb|AAX35050.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685984|gb|AAX35054.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685989|gb|AAX35058.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685994|gb|AAX35062.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685999|gb|AAX35066.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686004|gb|AAX35070.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686009|gb|AAX35074.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686014|gb|AAX35078.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686019|gb|AAX35082.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686024|gb|AAX35086.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686029|gb|AAX35090.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686034|gb|AAX35094.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686039|gb|AAX35098.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686044|gb|AAX35102.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686049|gb|AAX35106.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686054|gb|AAX35110.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686059|gb|AAX35114.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686064|gb|AAX35118.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686069|gb|AAX35122.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686074|gb|AAX35126.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686079|gb|AAX35130.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686084|gb|AAX35134.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686089|gb|AAX35138.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686094|gb|AAX35142.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686099|gb|AAX35146.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686104|gb|AAX35150.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686109|gb|AAX35154.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686114|gb|AAX35158.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686119|gb|AAX35162.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686124|gb|AAX35166.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686129|gb|AAX35170.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686134|gb|AAX35174.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686139|gb|AAX35178.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686144|gb|AAX35182.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686149|gb|AAX35186.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686154|gb|AAX35190.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686159|gb|AAX35194.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686164|gb|AAX35198.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686169|gb|AAX35202.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686174|gb|AAX35206.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686179|gb|AAX35210.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686184|gb|AAX35214.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686189|gb|AAX35218.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686194|gb|AAX35222.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686199|gb|AAX35226.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686204|gb|AAX35230.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686209|gb|AAX35234.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686219|gb|AAX35242.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686224|gb|AAX35246.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686229|gb|AAX35250.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60686234|gb|AAX35254.1| NADH dehydrogenase subunit 6 [Elephas maximus]
          Length = 183

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           VM  + F + S + ++      +  +P+Y   SL+ +     G+ +  G  F+ ++  +V
Sbjct: 8   VMMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMSSGGSFLGLVVFLV 66

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           Y+G ++V F + I M   +            L +F +G+L    +V   
Sbjct: 67  YLGGMMVVFGYTIAMATEEYPETWGSNV-VVLSAFLVGLLMEVFMVVWL 114


>gi|11643413|gb|AAG39567.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S    +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +       A         G F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYSVSLAADPYPEAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120


>gi|255643831|gb|ACU22297.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|240266670|ref|YP_002971046.1| NADH dehydrogenase subunit 6 [Dendrocygna javanica]
 gi|209887475|gb|ACI95091.1| NADH dehydrogenase subunit 6 [Dendrocygna javanica]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 44/101 (43%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +       +    V +  +P Y V  L+ A V   G  L LG  F++++  +VY+G +
Sbjct: 4   FVFFLGVCFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFISLVLFMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +V F++ + +       A    +     +  + ++ A ++ 
Sbjct: 64  LVVFVYSVALAAEPFPKAWGDWRVVGHAAALVVVVFAGILY 104


>gi|115494703|ref|YP_778732.1| NADH dehydrogenase subunit 6 [Phocarctos hookeri]
 gi|115344869|emb|CAJ56921.1| NADH dehydrogenase subunit 6 [Phocarctos hookeri]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M + F ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G +++ F +   M             +  LG+F  G+L+  L+ C
Sbjct: 61  LGGMLIVFGYTTAMATEQYPEV-WVSNKAVLGAFIAGLLSELLLAC 105


>gi|13898633|gb|AAK48836.1| NADH dehydrogenase subunit 6 [Amazona ochrocephala auropalliata]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++++ LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G
Sbjct: 2   TYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F++ + +                    F  ++   LIV              +  
Sbjct: 62  GMLVVFVYSVSLAADPFPQVWGGWHTMGCVLGFAFVVGTGLIVWGWGDGGLGVGVVDNMG 121

Query: 125 VFKG 128
           VF G
Sbjct: 122 VFFG 125


>gi|19481560|gb|AAL88852.1|AF407119_1 NADH dehydrogenase subunit 6 [Ploceus ocularis]
          Length = 159

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +  D   E        G+     + ++   ++  AS  +V S   + 
Sbjct: 60  LGGMLVVFVYSVSLAADPYPEAWTDWGVVGYGFGLGLVVMIGLVVGGASGVLVDSGTADS 119

Query: 122 SRLVFK 127
           + L+  
Sbjct: 120 ASLLPA 125


>gi|1304730|gb|AAA99089.1| NADH dehydrogenase subunit 6 [Grus rubicunda]
 gi|224504162|gb|ACN53734.1| NADH dehydrogenase subunit 6 [Grus rubicunda]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|11643427|gb|AAG39574.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides
           trochiloides]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    S    +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
           +V F++ + +       A         G F +G++     V +  F V    G ++ +
Sbjct: 64  LVVFVYSVSLAADPYPKAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120


>gi|66276029|ref|YP_238280.1| NADH dehydrogenase subunit 6 [Branta canadensis]
 gi|63004247|gb|AAY25515.1| NADH dehydrogenase subunit 6 [Branta canadensis]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +       +    V +  +P Y V  L+ A V   G  L LG  F+A++  +VY+G
Sbjct: 2  AYFMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFLALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR 86


>gi|283096357|ref|YP_003359190.1| NADH dehydrogenase subunit 6 [Nyctereutes procyonoides]
 gi|281371704|gb|ADA63636.1| NADH dehydrogenase subunit 6 [Nyctereutes procyonoides]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S    VT  +PIY    LI +      +    G  F+ ++  ++Y
Sbjct: 1   MTTYIVFILSIVFVMSFVGFVTKPSPIYGGLVLIISGGIGCAIVFNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +    + ++         +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYT-TAMAMEQYPEVWVSNKAVLAAFITGLLSELLTAC 105


>gi|255643615|gb|ACU22135.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|1171840|sp|P43197|NU6M_CEPCO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|394666|emb|CAA52123.1| NADH dehydrogenase subunit 6 [Cepphus columba]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFVVFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
            ++V F++ + +       A         G+ F+ +L    ++       
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWGVVGYGASFVVVLMVGGVIGGFVGGW 111


>gi|115494773|ref|YP_778849.1| NADH dehydrogenase subunit 6 [Cystophora cristata]
 gi|115344995|emb|CAJ57038.1| NADH dehydrogenase subunit 6 [Cystophora cristata]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105


>gi|308745803|ref|YP_003934222.1| NADH dehydrogenase subunit 6 [Chrysolophus pictus]
 gi|238550661|gb|ACR44507.1| NADH dehydrogenase subunit 6 [Chrysolophus pictus]
 gi|307133857|gb|ADN32867.1| NADH dehydrogenase subunit 6 [Chrysolophus pictus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  F+++   +VY+G
Sbjct: 2   TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++V F++ + +       A    +    G  F+ ++     +  
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCVGAFLAG 106


>gi|148298643|ref|YP_001249295.1| NADH dehydrogenase subunit 6 [Ailuropoda melanoleuca]
 gi|145208514|gb|ABP38221.1| NADH dehydrogenase subunit 6 [Ailuropoda melanoleuca]
 gi|155368553|emb|CAM98570.1| NADH dehydrogenase subunit 6 [Ailuropoda melanoleuca]
 gi|195182386|emb|CAQ68441.1| NADH dehydrogenase subunit 6 [Ailuropoda melanoleuca]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +    + S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVSILSIVFVVSFAGFSSKPSPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L VC
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WLSNKAVLGAFIVGLLSELLAVC 105


>gi|56548689|ref|YP_161219.1| NADH dehydrogenase subunit 6 [Pseudocheirus peregrinus]
 gi|56398530|emb|CAG26405.1| NADH dehydrogenase subunit 6 [Pseudocheirus peregrinus]
          Length = 167

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 42/107 (39%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +P+Y   SL+ +      + + L   F+ +I  ++Y
Sbjct: 1   MKMMVIFLFSILLIFGFVAFASKPSPVYGGLSLVVSGGLGCAIVVSLEDTFLGLIVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +   M   +   +            F  +      V A
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNSVALSMLLFALLAEVMWFVVA 107


>gi|34106698|gb|AAQ62350.1| NADH dehydrogenase subunit 6 [Vidua fischeri]
 gi|34106700|gb|AAQ62351.1| NADH dehydrogenase subunit 6 [Vidua fischeri]
          Length = 159

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F        +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V F++ + +        E     G +G  F   L   + +  S 
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPETWTDWGVVGYGFGMGLVVMVGLIVSG 106


>gi|1304732|gb|AAA99090.1| NADH dehydrogenase subunit 6 [Grus rubicunda]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|159524383|ref|YP_001542766.1| NADH dehydrogenase subunit 6 [Helarctos malayanus]
 gi|121592342|gb|ABM63276.1| NADH dehydrogenase subunit 6 [Helarctos malayanus]
 gi|195182447|emb|CAQ68493.1| NADH dehydrogenase subunit 6 [Helarctos malayanus]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVVFVMGFVGFSSKPSPIYGGLVLIISGGAGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105


>gi|38707596|ref|NP_944735.1| NADH dehydrogenase subunit 6 [Pontoporia blainvillei]
 gi|38602555|emb|CAD88012.1| NADH6 protein [Pontoporia blainvillei]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++S   V +  +PIY    LI       G+   LG  F+ ++  ++Y
Sbjct: 1   MMIYIAFIMSIIFVLSLVGVSSKPSPIYGGVGLIVGGAMGCGIVFSLGGPFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V  +F         E  E       +   F+  LA E +V      V     E S
Sbjct: 61  LGGMLV--VFGYTTAMATEEYPEAWISNKIVLGSFVLGLAVEFLVVGYVLGVEGETAEFS 118

Query: 123 RL 124
            L
Sbjct: 119 GL 120


>gi|9230600|gb|AAF85926.1|AF171659_2 NADH dehydrogenase subunit 6 [Carduelis hornemanni]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F        + S  V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGVCFALGSLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|304365557|gb|ADM26363.1| NADH dehydrogenase subunit 6 [Geococcyx californianus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G +
Sbjct: 4  FVFFLGMFFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F++ + +       A    +
Sbjct: 64 LVVFVYSVSLAAEPFPEAWGSWQ 86


>gi|126792910|gb|ABO27311.1| NADH dehydrogenase subunit 6 [Rhynchopsitta pachyrhyncha]
          Length = 170

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F        +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G +
Sbjct: 4   FLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +V F++ + +       A   +         + I A   +     
Sbjct: 64  LVVFVYSVSLAADPFPQAWGGRYVVGYALGLVPIGAGLAVWGWGG 108


>gi|21306214|gb|AAM45913.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus]
          Length = 156

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 1  TYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 60

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A    +    G  FI
Sbjct: 61 GMLVVFVYSVSLAADPFPEAWGDWRVLGYGIGFI 94


>gi|107122084|ref|YP_626378.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|93140475|sp|Q2I3G3|NU6M_ELEMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|83415402|gb|ABC17902.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|148283475|gb|ABQ57322.1| NADH dehydrogenase subunit 6 [Elephas maximus]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 2/108 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F + S + ++      +  +P+Y   SL+ +     G+ +  G  F+ ++  +VY
Sbjct: 1   MMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMSSGGSFLGLVVFLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F + I M   +            L +F +G+L    +V   
Sbjct: 60  LGGMMVVFGYTIAMATEEYPETWGSNV-VVLSAFLVGLLMEVFMVVWL 106


>gi|239997619|gb|ACS37129.1| NADH dehydrogenase subunit 6 [Microcaecilia sp. PZ-2009]
          Length = 166

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F       +     V +  +P Y+ F L+    +   +    G  F++++  ++Y
Sbjct: 1   MSYIVFMGL-LGLVFGMVGVASNPSPYYAAFGLVLGAASGCVVLFSFGTTFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A       F   F+ G+L   L + 
Sbjct: 60  LGGMMVVFAYSAAMASEPYPEAWGSLSVIFYLVFYCGVLIIGLGLV 105


>gi|242097389|emb|CAY40189.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097403|emb|CAY40216.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097627|emb|CAY40640.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  +VY
Sbjct: 1   MMMYIVFILSTIFVMGFVGFSSKPSPIYGGLVLIVSGGVGCGIVLNFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLIAC 105


>gi|17488501|ref|NP_510980.1|ND6_15877 NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|17298333|gb|AAL38124.1|AF283503_12 NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643591|gb|ACU22117.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643595|gb|ACU22120.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643599|gb|ACU22123.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643603|gb|ACU22126.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643607|gb|ACU22129.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643611|gb|ACU22132.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643619|gb|ACU22138.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643623|gb|ACU22141.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643627|gb|ACU22144.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643631|gb|ACU22147.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643651|gb|ACU22162.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643655|gb|ACU22165.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643659|gb|ACU22168.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643663|gb|ACU22171.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643667|gb|ACU22174.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643675|gb|ACU22180.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643679|gb|ACU22183.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643695|gb|ACU22195.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643723|gb|ACU22216.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643727|gb|ACU22219.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643739|gb|ACU22228.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643743|gb|ACU22231.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643747|gb|ACU22234.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643751|gb|ACU22237.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643755|gb|ACU22240.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643759|gb|ACU22243.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643763|gb|ACU22246.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643767|gb|ACU22249.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643771|gb|ACU22252.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643775|gb|ACU22255.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643779|gb|ACU22258.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643783|gb|ACU22261.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643787|gb|ACU22264.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643791|gb|ACU22267.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643795|gb|ACU22270.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643799|gb|ACU22273.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643803|gb|ACU22276.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643807|gb|ACU22279.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643811|gb|ACU22282.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643815|gb|ACU22285.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643823|gb|ACU22291.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643827|gb|ACU22294.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643839|gb|ACU22303.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643843|gb|ACU22306.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643847|gb|ACU22309.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643859|gb|ACU22318.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643863|gb|ACU22321.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643867|gb|ACU22324.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643871|gb|ACU22327.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643883|gb|ACU22336.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643887|gb|ACU22339.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643891|gb|ACU22342.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643895|gb|ACU22345.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643899|gb|ACU22348.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643903|gb|ACU22351.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643939|gb|ACU22378.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643947|gb|ACU22384.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643951|gb|ACU22387.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643955|gb|ACU22390.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643959|gb|ACU22393.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643963|gb|ACU22396.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643967|gb|ACU22399.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643971|gb|ACU22402.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643975|gb|ACU22405.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643979|gb|ACU22408.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643983|gb|ACU22411.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643991|gb|ACU22417.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644007|gb|ACU22429.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644027|gb|ACU22444.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644075|gb|ACU22480.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644083|gb|ACU22486.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644087|gb|ACU22489.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644091|gb|ACU22492.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644095|gb|ACU22495.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644099|gb|ACU22498.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644111|gb|ACU22507.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644115|gb|ACU22510.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644127|gb|ACU22519.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644135|gb|ACU22525.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644139|gb|ACU22528.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644143|gb|ACU22531.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644147|gb|ACU22534.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644155|gb|ACU22540.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644163|gb|ACU22546.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644167|gb|ACU22549.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644171|gb|ACU22552.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644175|gb|ACU22555.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644183|gb|ACU22561.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644187|gb|ACU22564.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644191|gb|ACU22567.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644195|gb|ACU22570.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644199|gb|ACU22573.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|28975387|gb|AAO61770.1| NADH dehydrogenase subunit 6 [Accipiter nisus nisus]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+   V   GL + LG  FVA++  +VY+G
Sbjct: 2   AYFVLFLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGLLVSLGVPFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++V F++ + M            +    G   + +L   ++   
Sbjct: 62  GMLVVFVYSVCMAADPFPETWGDWRVLGYGVVMVLMLIVGVVFVG 106


>gi|195661140|ref|YP_002117865.1| NADH dehydrogenase subunit 6 [Epinephelus coioides]
 gi|153973778|gb|ABS54447.1| NADH dehydrogenase subunit 6 [Epinephelus coioides]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + F +     I+ +  V +  +P +    L+       G+ +  G+ F+A+I  +
Sbjct: 1   MCFTVVCFLIC---WIVGAIAVASNPSPFFGALGLVMVAGVGCGILVEYGSPFLALILFL 57

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           +Y+G ++V F +   +       AEP  +     +  + +    ++V A   M +
Sbjct: 58  IYLGGMLVVFAYSAAL------AAEPYPESWVNPAVVVYMCCYTVVVLAGANMFW 106


>gi|40805121|ref|NP_955690.1| NADH dehydrogenase subunit 6 [Nannospalax ehrenbergi]
 gi|40644204|emb|CAC95221.1| NADH dehydrogenase subunit 6 [Nannospalax ehrenbergi]
          Length = 174

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S   +     +    +P+Y    LI       G+ L  G +F+ ++  ++Y+G ++V
Sbjct: 6   FIMSVALVTCFIGLSIKPSPVYGGLCLIVGGCVGCGIVLSFGGQFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            F +   M   +   +        LG   +GI+   L+V    
Sbjct: 66  VFGYTAAMASEEYPESWG-SNWLVLGLLVVGIIMELLLVFWLG 107


>gi|21449985|ref|NP_659324.1|ND6_16493 NADH dehydrogenase subunit 6 [Manis tetradactyla]
 gi|21425392|emb|CAD13273.1| NADH dehydrogenase subunit 6 [Manis tetradactyla]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S   V +  +P+Y   SLI A     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYVMFILSIIFVLSFLGVSSKPSPVYGGLSLIVAGGVGCGVVVNFGGPFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   M       A       ++ +  +       +V     M+F  +GE  
Sbjct: 61  LGGMLVVFGYTAAM-------AIEEYPEAWVSNIVVLGAFVIGMVMELLLMLFMVKGEGL 113

Query: 123 RLVFKGNN 130
            +  + NN
Sbjct: 114 GVAVEFNN 121


>gi|1171847|sp|P43203|NU6M_PTYAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394682|emb|CAA52129.1| NADH dehydrogenase subunit 6 [Ptychoramphus aleuticus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVA 84
           ++V F++ + +       A
Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81


>gi|290573382|gb|ADD46503.1| NADH dehydrogenase subunit 6 [Rattus leucopus]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLAGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+  FF+  L  EL+V
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELVV 102


>gi|5834993|ref|NP_008145.1|ND6_10422 NADH dehydrogenase subunit 6 [Xenopus laevis]
 gi|128824|sp|P03927|NU6M_XENLA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|807693|gb|AAA66469.1| ORF 6 [Xenopus laevis]
          Length = 170

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 48/116 (41%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + ++    V +  +P Y+   L+ A      + +  G+ F++++  ++Y+G ++V F + 
Sbjct: 11  VLVLGLVAVASNPSPFYAALGLVLAAGAGCLVIVSFGSSFLSIVLFLIYLGGMLVVFAYS 70

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
                   E         ++  + IG+L   L +        +   EL   V +G+
Sbjct: 71  AARAKPYPEAWGSWSVVFYVLVYLIGVLVWYLFLGGVEVDGMNKSSELGSYVMRGD 126


>gi|283048893|gb|ADB06698.1| NADH dehydrogenase subunit 6 [Gallus gallus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ ++   +++   
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGCGLGFVLVVWMGVVLGGL 107


>gi|223976118|ref|YP_002600881.1| NADH dehydrogenase subunit 6 [Antilope cervicapra]
 gi|223972287|dbj|BAH23326.1| NADH dehydrogenase subunit 6 [Antilope cervicapra]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVVGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKAVLGAFVTGLLMEFLMV 104


>gi|218157314|ref|YP_002364467.1| NADH dehydrogenase subunit 6 [Geococcyx californianus]
 gi|166093109|gb|ABY82541.1| NADH dehydrogenase subunit 6 [Geococcyx californianus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G +
Sbjct: 4  FVFFLGMCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F++ + +       A    +
Sbjct: 64 LVVFVYSVSLAAEPFPEAWGSWQ 86


>gi|255643851|gb|ACU22312.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643855|gb|ACU22315.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|195661126|ref|YP_002117878.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|195182371|emb|CAQ68428.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097235|emb|CAY39899.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097263|emb|CAY39952.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097277|emb|CAY39978.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097291|emb|CAY40005.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097431|emb|CAY40268.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097445|emb|CAY40295.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097459|emb|CAY40324.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097473|emb|CAY40350.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097487|emb|CAY40376.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097501|emb|CAY40402.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097515|emb|CAY40429.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097613|emb|CAY40614.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  +VY
Sbjct: 1   MMMYIVFILSTIFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105


>gi|156766032|ref|YP_001434587.1| NADH dehydrogenase subunit 6 [Asymmetron sp. A TK-2007]
 gi|156713119|dbj|BAF76618.1| NADH dehydrogenase subunit 6 [Asymmetron sp. A TK-2007]
          Length = 167

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 46/103 (44%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L SFM +++S +V+  ++P +   ++ F  +  + +   +   F AMI +++Y+G ++V 
Sbjct: 5   LLSFMILLTSMMVIRAKSPYFGALAMAFLSLLISIMMFQMNLIFSAMILVLIYLGGMLVV 64

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F++        I +         +      ++    +    +F
Sbjct: 65  FVYSTAYSADLIPLPMNLTLTVLVALIGTTLITLSPLSTMESF 107


>gi|5081447|gb|AAD39386.1|AF123906_1 NADH dehydrogenase subunit 6 [Grus grus]
 gi|5081449|gb|AAD39387.1|AF123907_1 NADH dehydrogenase subunit 6 [Grus monacha]
 gi|224504106|gb|ACN53682.1| NADH dehydrogenase subunit 6 [Grus grus]
 gi|224504120|gb|ACN53695.1| NADH dehydrogenase subunit 6 [Grus monacha]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|255643819|gb|ACU22288.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643835|gb|ACU22300.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|255643635|gb|ACU22150.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643639|gb|ACU22153.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643643|gb|ACU22156.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643647|gb|ACU22159.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643671|gb|ACU22177.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643683|gb|ACU22186.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643687|gb|ACU22189.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643691|gb|ACU22192.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643699|gb|ACU22198.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|255643735|gb|ACU22225.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643907|gb|ACU22354.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643911|gb|ACU22357.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643919|gb|ACU22363.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643923|gb|ACU22366.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643927|gb|ACU22369.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643931|gb|ACU22372.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 40/95 (42%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+        L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGGGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|213136093|gb|ACJ43646.1| NADH dehydrogenase subunit 6 [Euproctus montanus]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 45/101 (44%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +LF F  +I    V +  +P ++ F LI A ++   L +  G  F++++ +++Y+G ++V
Sbjct: 6   FLFMFGILIGLVAVASNPSPYFAAFGLILASISGCCLLVDFGISFLSIVLVLIYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            F +   +       A            ++ +L    ++  
Sbjct: 66  VFAYSASLAAEPYPEAWGSWSVVIYVCIYLVLLMLGWMLFG 106


>gi|115494633|ref|YP_778914.1| NADH dehydrogenase subunit 6 [Pusa sibirica]
 gi|115345079|emb|CAJ57116.1| NADH dehydrogenase subunit 6 [Pusa sibirica]
 gi|115345093|emb|CAJ57129.1| NADH dehydrogenase subunit 6 [Pusa sibirica]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105


>gi|71658077|ref|YP_272084.1| NADH dehydrogenase subunit 6 [Gallus gallus bankiva]
 gi|71040234|dbj|BAE16090.1| NADH dehydrogenase subunit 6 [Gallus gallus bankiva]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ ++   +++   
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGNWRVVGYGLGFVLVVWMGVVLGGL 107


>gi|302201575|gb|ADL09134.1| NADH dehydrogenase subunit 6 [Aceros corrugatus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 37/82 (45%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F   F    ++    V +  +P Y V  L+   V   G  L LG  F+A++  +VY+G +
Sbjct: 4  FVLFFGLAFVLGGLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGVSFIALVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRK 88
          +V F++ + +       A   +
Sbjct: 64 LVVFVYSVALAADPFPEAWGSR 85


>gi|289183247|ref|YP_003457227.1| NADH dehydrogenase subunit 6 [Echinocardium cordatum]
 gi|288995562|emb|CBH40162.1| NADH dehydrogenase subunit 6 [Echinocardium cordatum]
          Length = 162

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 12/159 (7%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++ S LV    +P YS   L+   V+   +  +LG  FVA++ L+VY+G ++V
Sbjct: 4   YLCLVFMLVGSTLVFYSLSPYYSALGLVVVSVSGCVVLGVLGGSFVALVLLLVYMGGMLV 63

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F +           +    +R    S    ++   L      F+ F+   + +   F+ 
Sbjct: 64  VFAY----------SSAISAERFPSVSNLSEVVGLSLFFSTWVFVSFNDLNDTNNNFFQL 113

Query: 129 NNVENI--GKVLYTQYAYPLEISGFILLLSMIGAIVLML 165
            + E++      Y +    + +  FILL++++GA+++  
Sbjct: 114 ISGESVLGSSSFYNEGGALVIVGVFILLVALVGALIISR 152


>gi|189095541|ref|YP_001936288.1| NADH dehydrogenase subunit 6 [Syrmaticus reevesii]
 gi|171702175|dbj|BAG16208.1| NADH dehydrogenase subunit 6 [Syrmaticus reevesii]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 44/106 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     ++    V +  +P Y V  L+ A V   G  + LG  F+++   +VY+G
Sbjct: 2   TYFVILLGVCFMLGVLAVASNPSPYYGVVGLVLASVIGCGWLVSLGVSFISLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ ++     +   
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCIGAFLAGL 107


>gi|21306244|gb|AAM45928.1| NADH dehydrogenase subunit 6 [Chrysococcyx flavigularis]
          Length = 156

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  F++++  +VY+G
Sbjct: 1  TYFVLFLGGCFVLGGLAVASNPSPYYGVVGLVLASVTGCGWLLSLGVSFMSLVLFMVYLG 60

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 61 GMLVVFVYSVSLAADPFPEAWGDWR 85


>gi|289183289|ref|YP_003457266.1| NADH dehydrogenase subunit 6 [Holothuria forskali]
 gi|288995576|emb|CBH40175.1| NADH dehydrogenase subunit 6 [Holothuria forskali]
          Length = 162

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 42/92 (45%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + FYLF  + +  S LV    +P Y+   L+   +    +   LG  F+A++ L++Y+G 
Sbjct: 1  MVFYLFLLLLLFGSTLVFYSLSPYYAALGLVLTSLFGCVVLSCLGLSFMALLLLLIYMGG 60

Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97
          ++V F++   +      V     +   + S  
Sbjct: 61 MMVVFVYSSALSADRYPVVSNLGEVFIIFSLL 92


>gi|221664573|gb|ACM24448.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++    +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FVLSSLFLVGCLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   M   +            LG   +G++    ++C  N+
Sbjct: 66  VFGYTTAMATEEYPETWG-SNWLILGFLVLGVIMEVFLICVLNY 108


>gi|212725604|ref|YP_002317348.1| NADH dehydrogenase subunit 6 [Martes zibellina]
 gi|211997673|gb|ACJ14800.1| NADH dehydrogenase subunit 6 [Martes zibellina]
          Length = 177

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WASNKAVLGAFIVGLLSELLTAC 105


>gi|71657983|ref|YP_272123.1| NADH dehydrogenase subunit 6 [Gallus sonneratii]
 gi|71040276|dbj|BAE16129.1| NADH dehydrogenase subunit 6 [Gallus sonneratii]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGICFVLGILAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
            ++V F++ + +       A    +   +G     +L   + V    F+ F
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGSWR--VVGYGLSFVLVVWMGVVLGGFVDF 110


>gi|327492707|ref|YP_004347598.1| NADH dehydrogenase subunit 6 [Tetractenos glaber]
 gi|327392600|dbj|BAK10027.1| NADH dehydrogenase subunit 6 [Tetractenos glaber]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           L F L   +      ++V   NP   Y VFSL+   +   G+ +L G  F++++ L++Y+
Sbjct: 5   LVFLLLGMLV----AMIVLSMNPAPFYGVFSLVLLALYCCGVLVLHGGAFLSLVLLMIYM 60

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           G ++V F++    L  D +   P   +  L           ++  +  F      G    
Sbjct: 61  GGMLVVFIYS-SALSADKDPEVPSGWQAGLFFMGYFFFVFGVLYMSGGFDGEVWWGVSGE 119

Query: 124 LVFKG 128
           L ++G
Sbjct: 120 LDWEG 124


>gi|224588048|ref|YP_002640576.1| NADH dehydrogenase subunit 6 [Coturnicops exquisitus]
 gi|224471593|dbj|BAH24086.1| NADH dehydrogenase subunit 6 [Coturnicops exquisitus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G +
Sbjct: 4  FMLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGLSFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V FL+ + +
Sbjct: 64 LVVFLYSVSL 73


>gi|164519191|ref|YP_001648875.1| NADH dehydrogenase subunit 6 [Microhyla okinavensis]
 gi|164454437|dbj|BAF96775.1| NADH dehydrogenase subunit 6 [Microhyla okinavensis]
          Length = 166

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 43/104 (41%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
            F  + ++    V +  +P Y+   L+    +   + +  G  F++++  +VY+G ++V 
Sbjct: 2   FFEVVLLVGFVAVASNPSPYYAALGLVIGAGSGCLMLINEGMTFLSLVLFLVYLGGMMVV 61

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           F +   ++      A          S ++ +L    ++    F+
Sbjct: 62  FAYSAALVAEPYPEAWGSVWVLSYISSYLVVLFVGWLLWGEYFV 105


>gi|317097325|ref|YP_004123530.1| NADH dehydrogenase subunit 6 [Podoces hendersoni]
 gi|290758068|gb|ADD53017.1| NADH dehydrogenase subunit 6 [Podoces hendersoni]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 39/83 (46%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F    S   ++    V +  +P Y V  L+ A +   G  + +G  FV+++ ++VY+G +
Sbjct: 4  FVLFMSLCFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSMGVSFVSLVLVMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F++ + +       +    +
Sbjct: 64 LVVFVYSVSLAADPYPESWGSWR 86


>gi|21306228|gb|AAM45920.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306230|gb|AAM45921.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306232|gb|AAM45922.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306234|gb|AAM45923.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306236|gb|AAM45924.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306238|gb|AAM45925.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306240|gb|AAM45926.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
 gi|21306242|gb|AAM45927.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus]
          Length = 156

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 1  TYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 60

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A    +    G  FI
Sbjct: 61 GMLVVFVYSVSLAADPFPEAWGDWRVLGYGIGFI 94


>gi|255643731|gb|ACU22222.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643915|gb|ACU22360.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644151|gb|ACU22537.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644159|gb|ACU22543.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|47026793|gb|AAT08604.1| NADH dehydrogenase subunit 6 [Bipes biporus]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y      +++   V     P ++  +L  A +  + + +  G  F+ ++ L++Y+G ++V
Sbjct: 6   YFLGIGLLLAVIGVAVNPAPYFATGALAVAALFGSAILVWCGGLFLPVVLLLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFL--GSFFIGILAAELIVCASNF 112
            F + I ++  +        +      G  F+G    EL++   ++
Sbjct: 66  VFAYAIALVPGERAGVYGGWQVWVWVSGLVFVGFCLVELMIGVLDW 111


>gi|77020034|ref|YP_337792.1| NADH dehydrogenase subunit 6 [Saccoglossus kowalevskii]
 gi|50511957|gb|AAQ92988.1| NADH dehydrogenase subunit 6 [Saccoglossus kowalevskii]
          Length = 159

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 34/64 (53%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          ++   +      +V   R+P +S   L+ A    +G+ +L GA FV +I  ++Y+G ++V
Sbjct: 3  FVLCSLVFGGGVIVFMSRSPYFSALGLVLATCGLSGVLMLGGAVFVGLILFLMYLGGMLV 62

Query: 69 FFLF 72
           F +
Sbjct: 63 VFAY 66


>gi|255643703|gb|ACU22201.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643707|gb|ACU22204.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643711|gb|ACU22207.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643715|gb|ACU22210.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643719|gb|ACU22213.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643875|gb|ACU22330.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643879|gb|ACU22333.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643999|gb|ACU22423.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644003|gb|ACU22426.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644011|gb|ACU22432.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644015|gb|ACU22435.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644023|gb|ACU22441.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644055|gb|ACU22465.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644059|gb|ACU22468.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644063|gb|ACU22471.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644067|gb|ACU22474.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644071|gb|ACU22477.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|124056424|ref|YP_001019022.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys]
 gi|124012083|gb|ABM87948.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  AYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A         G  FI
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWGVVGYGMGFI 95


>gi|289804901|ref|ZP_06535530.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 88

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141
           E+ + R+           +L+A ++      ++   +  +          + +G  L+  
Sbjct: 1   EIEQERQWLKPQVWIGPAVLSAIMLAVIVYAILGVNDQGIDGTPISA---KAVGITLFGP 57

Query: 142 YAYPLEISGFILLLS 156
           Y   +E++  +LL  
Sbjct: 58  YVLAVELASMLLLAG 72


>gi|115494815|ref|YP_778797.1| NADH dehydrogenase subunit 6 [Lobodon carcinophaga]
 gi|37620570|gb|AAQ95094.1| NADH dehydrogenase subunit 6 [Lobodon carcinophaga]
 gi|115344939|emb|CAJ56986.1| NADH dehydrogenase subunit 6 [Lobodon carcinophaga]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYVVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105


>gi|16356993|ref|NP_443227.1| NADH dehydrogenase subunit 6 [Chauliodus sloani]
 gi|16266784|dbj|BAB69986.1| NADH dehydrogenase subunit 6 [Chauliodus sloani]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  LF    +     V +   P ++   L+ A     G+ +  G  F++++  ++Y+G
Sbjct: 2   TYFMSLFLITFVAGLVGVASSPAPYFAALGLVVAAGAGCGVLVGHGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V  +F            E    R  LG   + +L   + V            E +  
Sbjct: 62  GMLV--VFAYSAALAAEPYPESWVDRSVLGHALVYLLGVTVSVWYLGAGWHEGSWETAEG 119

Query: 125 VFKGN 129
           + + +
Sbjct: 120 LKEFS 124


>gi|289183229|ref|YP_003457211.1| NADH dehydrogenase subunit 6 [Tetrabrachium ocellatum]
 gi|288908775|dbj|BAI77031.1| NADH dehydrogenase subunit 6 [Tetrabrachium ocellatum]
          Length = 194

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 21  LVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
           LV+   NP   ++  SL+ +     G+    GA F++++  ++Y+G ++V F +   +  
Sbjct: 16  LVILSSNPSPYFAALSLMISAGCGGGILTTYGASFLSLVLFLIYLGGMLVVFAYSAALAA 75

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133
                              +    A L++    +++F  E +    +    ++EN
Sbjct: 76  EPYPEILE-------APLLLLSTMACLMMATLGYIMFLNETQEGPFLIPMGDLEN 123


>gi|223976132|ref|YP_002600988.1| NADH dehydrogenase subunit 6 [Giraffa camelopardalis angolensis]
 gi|223972315|dbj|BAH23352.1| NADH dehydrogenase subunit 6 [Giraffa camelopardalis]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMVYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +    + I+         +  LG+F +G+L   L+V
Sbjct: 61  LGGMMVVFGYT-TAMAIEQYPEVWAXNKTVLGAFIVGLLMEFLMV 104


>gi|226464100|ref|YP_002791222.1| NADH dehydrogenase subunit 6 [Rattus praetor]
 gi|160688844|gb|ABX45257.1| NADH dehydrogenase subunit 6 [Rattus praetor]
          Length = 172

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY  F LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLAGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+  FF+  L  EL+V
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELVV 102


>gi|112253910|ref|YP_717164.1| hypothetical protein BrnapMp067 [Brassica napus]
 gi|37591112|dbj|BAC98914.1| hypothetical protein [Brassica napus]
          Length = 261

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 11/105 (10%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLF-----------LLLGAEFV 54
           +   + S  A++   LV    N ++SV   I  F +    F           L +  +F+
Sbjct: 1   MILSVLSSPALVFGLLVTRAINFVHSVLFPIPVFCSIETFFTYFSSFPIIRKLSMKWQFL 60

Query: 55  AMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
                      +++  LF +  L  D       +    +  F  G
Sbjct: 61  WFSIFKFIFSIIMIKLLFSVGYLCFDDLTRAISQFYPPISGFMGG 105


>gi|240266510|ref|YP_002970858.1| NADH dehydrogenase subunit 6 [Basiliscus vittatus]
 gi|239735172|dbj|BAH70393.1| NADH dehydrogenase subunit 6 [Basiliscus vittatus]
          Length = 174

 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F LF F  I     VV+  +P +   SL+ +     G+ +  G  FV+++  ++Y
Sbjct: 1   MSYLLFTLF-FCLIFGLLGVVSHPSPYFGAVSLVVSAAVGCGVLVGFGGTFVSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V F + + +              G   LG  F+ ++   L        ++   G
Sbjct: 60  LGGMLVVFGYSVALASDPHPDTWGSWSVGLYLLGYVFLVVVLWGLFGDFCGLSIYGLVG 118


>gi|153124667|ref|YP_001382270.1| NADH dehydrogenase subunit 6 [Gulo gulo]
 gi|151416760|emb|CAM98635.1| NADH6 protein [Gulo gulo]
          Length = 177

 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYVVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLAAC 105


>gi|52220983|ref|YP_087093.1| NADH dehydrogenase subunit 6 [Bubalus bubalis]
 gi|33334131|gb|AAQ12189.1| NADH dehydrogenase subunit 6 [Bubalus bubalis]
 gi|44894107|gb|AAS48609.1| NADH dehydrogenase subunit 6 [Bubalus bubalis]
 gi|51173181|gb|AAT97413.1| NADH dehydrogenase subunit 6 [Bubalus bubalis]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G+L   L+VC
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKVVLGAFVTGLLMEFLMVC 105


>gi|68989173|ref|YP_254622.1|ND6_18490 NADH dehydrogenase subunit 6 [Thalassarche melanophrys]
 gi|37724198|gb|AAO18360.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  AYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A         G  FI
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWGVVGYGMGFI 95


>gi|1171831|sp|P43191|NU6M_AETPY RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394658|emb|CAA52132.1| NADH dehydrogenase subunit 6 [Aethia pygmaea]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVA 84
           ++V F++ + +       A
Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81


>gi|295641227|gb|ADG22766.1| NADH dehydrogenase subunit 6 [Melogale moschata]
          Length = 177

 Score = 38.9 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WASNKAVLGAFIVGLLSELLTAC 105


>gi|162145729|gb|ABX82902.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097305|emb|CAY40031.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097333|emb|CAY40083.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097347|emb|CAY40109.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097361|emb|CAY40136.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097375|emb|CAY40163.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097417|emb|CAY40242.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097557|emb|CAY40510.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097571|emb|CAY40536.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097585|emb|CAY40562.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097599|emb|CAY40588.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
 gi|242097655|emb|CAY40694.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  +VY
Sbjct: 1   MMMYIVFILSTIFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLIAC 105


>gi|154090905|ref|YP_001403140.1| NADH dehydrogenase subunit 6 [Hippoglossus hippoglossus]
 gi|154090933|ref|YP_001403153.1| NADH dehydrogenase subunit 6 [Hippoglossus stenolepis]
 gi|153581696|emb|CAO79628.1| NADH dehydrogenase 6 [Hippoglossus hippoglossus]
 gi|153581710|emb|CAO79641.1| NADH dehydrogenase 6 [Hippoglossus hippoglossus]
 gi|153581724|emb|CAO79654.1| NADH dehydrogenase 6 [Hippoglossus hippoglossus]
 gi|153581738|emb|CAO79667.1| NADH dehydrogenase 6 [Hippoglossus hippoglossus]
 gi|153581752|emb|CAO79680.1| NADH dehydrogenase 6 [Hippoglossus stenolepis]
 gi|153581766|emb|CAO79693.1| NADH dehydrogenase 6 [Hippoglossus stenolepis]
 gi|153581780|emb|CAO79706.1| NADH dehydrogenase 6 [Hippoglossus stenolepis]
 gi|153581794|emb|CAO79719.1| NADH dehydrogenase 6 [Hippoglossus stenolepis]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 42/113 (37%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFAMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGMLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F +   +       +         G  + G +     +    +   S 
Sbjct: 62  GMLVVFAYSAALAAEPYPESWGSWSVMVYGVVYTGGVLLVSGLFWGGWYESSW 114


>gi|115494745|ref|YP_778875.1| NADH dehydrogenase subunit 6 [Phoca groenlandica]
 gi|115345023|emb|CAJ57064.1| NADH dehydrogenase subunit 6 [Phoca groenlandica]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFVLSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105


>gi|82203|pir||A05215 hypothetical protein 138 - common tobacco chloroplast
 gi|225258|prf||1211235CT ORF 138
          Length = 138

 Score = 38.9 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMI 57
          NPIYS FSL    V  +  ++L  + FVA  
Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSYFVAAA 61


>gi|299828948|ref|YP_003734778.1| NADH dehydrogenase subunit 6 [Lycothrissa crocodilus]
 gi|299758201|dbj|BAJ09879.1| NADH dehydrogenase subunit 6 [Lycothrissa crocodilus]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 45/109 (41%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           FF ++ F+ I+    V +   P ++   L+       G+    GA F+A++  ++Y+G +
Sbjct: 4   FFCMWLFLLILGMVGVASNPAPYFAALGLVVVAGAGCGVLAGCGASFLAVVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           +V F++   +                   F++  +   ++   + +  +
Sbjct: 64  LVVFVYSAALAAEPHPEGWWDVSVFEYVMFYLVGVGVAMVYFGNKWYGY 112


>gi|81230413|ref|YP_398765.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|93140476|sp|Q38PR1|NU6M_MAMPR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|75914862|gb|ABA29795.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|83415388|gb|ABC17889.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367508|gb|ABV45638.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367576|gb|ABV45680.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367590|gb|ABV45693.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367604|gb|ABV45706.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367632|gb|ABV45732.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367646|gb|ABV45745.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367660|gb|ABV45758.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367702|gb|ABV45797.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 42/103 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++      +  +P+Y   SLI +     G+ +  G  F+ ++  +VY+G ++V
Sbjct: 6   FIMSVLYVVGFIGFSSKPSPVYGGMSLIVSGGLGCGIIMSSGGSFLGLVVFLVYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            F + I M   +                   ++   +IV   +
Sbjct: 66  VFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFS 108


>gi|115494857|ref|YP_778901.1| NADH dehydrogenase subunit 6 [Pusa caspica]
 gi|115345065|emb|CAJ57103.1| NADH dehydrogenase subunit 6 [Pusa caspica]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105


>gi|56548773|ref|YP_161232.1| NADH dehydrogenase subunit 6 [Macrotis lagotis]
 gi|56398544|emb|CAG26418.1| NADH dehydrogenase subunit 6 [Macrotis lagotis]
          Length = 167

 Score = 38.9 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +P+Y   SL+ +      + + L   F+ ++  +VY
Sbjct: 1   MKMMVLFLFSILLIFGFVAFASKPSPVYGGLSLVISGGVGCAIVVSLEDTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   M   +           ++G+     +   +++  + +   S E ELS
Sbjct: 61  LGGMLVVFGYTAAMATEEYPET-------WVGNVVALSMLCFVLLMEAIWYFSSGEIELS 113

Query: 123 RLVFKGNNV 131
             +   ++V
Sbjct: 114 TSIELFDSV 122


>gi|7580475|ref|NP_037660.1|ND6_15261 NADH dehydrogenase subunit 6 [Talpa europaea]
 gi|6851077|emb|CAB71170.1| NADH dehydrogenase subunit 6 [Talpa europaea]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTILVVSFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNYGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           +G ++V  +F         E  E       + S F+  + +EL+      M
Sbjct: 61  LGGMLV--VFGYTTAMAMEEYPEVWVSNKIVLSLFVLGMFSELLFVGYCVM 109


>gi|62736205|ref|YP_227593.1| NADH dehydrogenase subunit 6 [Cervus nippon yesoensis]
 gi|63025138|ref|YP_232844.1| NADH dehydrogenase subunit 6 [Cervus nippon centralis]
 gi|116014308|ref|YP_788154.1| NADH dehydrogenase subunit 6 [Cervus nippon taiouanus]
 gi|288903462|ref|YP_003434180.1| NADH dehydrogenase subunit 6 [Cervus nippon hortulorum]
 gi|288903490|ref|YP_003434206.1| NADH dehydrogenase subunit 6 [Cervus elaphus xanthopygus]
 gi|312233477|ref|YP_004021876.1| NADH dehydrogenase subunit 6 [Cervus elaphus songaricus]
 gi|62241305|dbj|BAD93681.1| NADH dehydrogenase subunit 6 [Cervus nippon yesoensis]
 gi|62751082|dbj|BAD95773.1| NADH dehydrogenase subunit6 [Cervus nippon centralis]
 gi|115531532|gb|ABJ09691.1| NADH dehydrogenase subunit 6 [Cervus nippon taiouanus]
 gi|117649980|gb|ABK54036.1| NADH dehydrogenase subunit 6 [Cervus nippon taiouanus]
 gi|285013428|gb|ADC32707.1| NADH dehydrogenase subunit 6 [Cervus nippon hortulorum]
 gi|285013442|gb|ADC32720.1| NADH dehydrogenase subunit 6 [Cervus elaphus xanthopygus]
 gi|309399278|gb|ADO78912.1| NADH dehydrogenase subunit 6 [Cervus nippon hortulorum]
 gi|309399292|gb|ADO78925.1| NADH dehydrogenase subunit 6 [Cervus elaphus songaricus]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   ++V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVMMV 104


>gi|5081451|gb|AAD39388.1|AF123908_1 NADH dehydrogenase subunit 6 [Grus americana]
 gi|224504092|gb|ACN53669.1| NADH dehydrogenase subunit 6 [Grus americana]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFMLFMGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|30314637|dbj|BAC76076.1| NADH dehydrogenase 6 [Cervus nippon yesoensis]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 12/167 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117
           +G ++V F +   M             +  LG+F  G+L   ++V          +VF  
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVMMVYYVLKDEEVEIVFQF 119

Query: 118 EGELSRLVFKGNNV-----ENIGK-VLYTQYAYPLEISGFILLLSMI 158
            G    +++   +      E +G   LY+  A+ + ++G+ LL+ ++
Sbjct: 120 NGLGDWVIYDTGDSGFFSEEAMGIAALYSYGAWLVIVTGWSLLIGVV 166


>gi|76009022|gb|ABA38973.1| NADH dehydrogenase subunit 6 [Leucopternis plumbeus]
          Length = 172

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++   +       A    +
Sbjct: 62 GMLVVFVYSACLAADPFPEAWGDWR 86


>gi|83309028|ref|YP_423973.1| NADH dehydrogenase subunit 6 [Dasyurus hallucatus]
 gi|55416201|gb|AAV50068.1| NADH dehydrogenase subunit 6 [Dasyurus hallucatus]
          Length = 166

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 45/108 (41%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  ++ S M I       +  +P+Y   SL+ +      + + L + F+ +I  ++Y
Sbjct: 1   MEMMLIFVLSLMLIFGFVAFASKPSPVYGGLSLVISGGLGCAIVVSLNSTFLGLIVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F +   M   +   +       F    F  ++    ++ + 
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNMVAFSMLLFSLLMEMVWLMVSG 108


>gi|21306172|gb|AAM45892.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306174|gb|AAM45893.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306176|gb|AAM45894.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306178|gb|AAM45895.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306180|gb|AAM45896.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306182|gb|AAM45897.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306184|gb|AAM45898.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306186|gb|AAM45899.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306188|gb|AAM45900.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306190|gb|AAM45901.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306192|gb|AAM45902.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306194|gb|AAM45903.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306196|gb|AAM45904.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306198|gb|AAM45905.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306200|gb|AAM45906.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306202|gb|AAM45907.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306204|gb|AAM45908.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306206|gb|AAM45909.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306208|gb|AAM45910.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306210|gb|AAM45911.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
 gi|21306212|gb|AAM45912.1| NADH dehydrogenase subunit 6 [Chalcites basalis]
          Length = 156

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 1  TYFILFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 60

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 61 GMLVVFVYSVSLAADPFPEAWGDWR 85


>gi|34106302|gb|AAQ62152.1| NADH dehydrogenase subunit 6 [Vidua chalybeata]
 gi|34106344|gb|AAQ62173.1| NADH dehydrogenase subunit 6 [Vidua chalybeata]
          Length = 159

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F        +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|281308366|gb|ADA58331.1| NADH dehydrogenase subunit 6 [Leucopternis plumbeus]
          Length = 156

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++   +       A    +
Sbjct: 62 GMLVVFVYSACLAADPFPEAWGDWR 86


>gi|164422160|ref|YP_001648831.1| NADH dehydrogenase subunit 6 [Sylvia atricapilla]
 gi|164414706|emb|CAP10133.1| NADH dehydrogenase subunit 6 [Sylvia atricapilla]
          Length = 172

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   +  +    V +  +P Y V  L+ A V   G  + LG  FV++  ++VY+G ++V 
Sbjct: 7   ILGLIFALGGLAVASNPSPYYGVIGLVIASVVGCGWLVSLGVSFVSLALIMVYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F++ + +              G  G  + G++   +++     
Sbjct: 67  FVYSVSLAADPYPEG-----WGDWGVVWYGLVMGLVVMVGGTI 104


>gi|66276112|ref|YP_238240.1| NADH dehydrogenase subunit 6 [Teratoscincus keyserlingii]
 gi|52426672|gb|AAU47381.1| NADH dehydrogenase subunit 6 [Teratoscincus keyserlingii]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 6/137 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L +   I+    V +  +P Y    L+ A  + A + ++LG  F+A++  ++Y
Sbjct: 1   MVYILF-LSTMCLILGIAGVASNPSPFYGAVGLVVAAASGASILVMLGGSFLAVVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEP-----RKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F + + +                +  G +   F+       +     + +  A
Sbjct: 60  LGGMLVVFAYSVALSAEPYPETWGDPFVLYRVWGCVVLVFVFFWGFGGLTGLEGWGLEVA 119

Query: 118 EGELSRLVFKGNNVENI 134
            G+        + V  +
Sbjct: 120 GGKWESPPMDFSGVVRL 136


>gi|13786597|ref|NP_112662.1| NADH dehydrogenase subunit 6 [Isoodon macrourus]
 gi|13676812|gb|AAK38292.1|AF358864_10 NADH dehydrogenase subunit 6 [Isoodon macrourus]
          Length = 166

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +P+Y   SL+ +      + + LG  F+ ++  +VY
Sbjct: 1   MKMMIIFLFSVLLIFGFVAFASKPSPVYGGLSLVASGGVGCAIVVSLGDTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V  +F         E  E         S F+  L  E++   S 
Sbjct: 61  LGGMLV--VFGYTAAMATEEYPETWVGNMVAFSMFVITLLIEIVWYISG 107


>gi|110189726|ref|YP_665640.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|26983987|gb|AAN77605.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228014958|gb|ACP50369.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
          Length = 172

 Score = 38.9 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLTGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+ SFF+  L  EL+V
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFSFFVLGLFMELVV 102


>gi|289183327|ref|YP_003457302.1| NADH dehydrogenase subunit 6 [Coelophrys brevicaudata]
 gi|288908811|dbj|BAI77064.1| NADH dehydrogenase subunit 6 [Coelophrys brevicaudata]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 1/115 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F LF F  ++   +V +  +P ++ F L+       GL    GA F++++  +VY
Sbjct: 1   MSYLMFMLF-FGMVLGLVVVASNPSPYFAAFGLVVVAGVGCGLLTGAGAAFLSLVLFLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +           +   F    ++ ++     +    +   S 
Sbjct: 60  LGGMLVVFAYSAALAAEPYPEGVGSRPVAFSAFVYLCVVGLISSMYWGGWYGSSW 114


>gi|288898457|gb|ADC66763.1| NADH dehydrogenase subunit 6 [Ursus arctos]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVVFVMGFVGFSSKPSPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105


>gi|126215431|ref|YP_001054904.1| NADH dehydrogenase subunit 6 [Pseudolabrus sieboldi]
 gi|126143632|dbj|BAF47365.1| NADH dehydrogenase subunit 6 [Pseudolabrus sieboldi]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F LF    ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G 
Sbjct: 5   LSFLLFGL--VMGLIAVASNPSPYFAALGLVVVAGMGCGVLVSYGGPFLSLVLFLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F +   +       AEP  +  F GS  + +      V  +   ++S   E+S + 
Sbjct: 63  MLVVFAYSAAL------AAEPYPESWFSGSVAMYMGVYIFGVVLAGVPLWSGWYEVSWVP 116

Query: 126 FK 127
             
Sbjct: 117 AD 118


>gi|84488719|ref|YP_448778.1| NADH dehydrogenase subunit 6 [Cygnus columbianus]
 gi|67005520|gb|AAY62378.1| NADH dehydrogenase subunit 6 [Cygnus columbianus]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +       +    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G
Sbjct: 2   AYFMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
            ++V F++ + +       A    +   +G     +    + +    FM
Sbjct: 62  GMLVVFVYSVALAAEPFPEAWGDWR--VIGYAAAFVAVVFVGLVFGGFM 108


>gi|326535925|ref|YP_004300369.1| NADH dehydrogenase subunit 6 [Gallinula chloropus]
 gi|325305661|gb|ADZ10824.1| NADH dehydrogenase subunit 6 [Gallinula chloropus]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 40/104 (38%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F        ++    V    +P Y V  L+ A V   G  L LG  FV+++  +VY+G +
Sbjct: 4   FMIFLGVCFVLGGLAVAPNPSPYYGVVGLVLASVVGCGWLLSLGLSFVSLVLFMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +V FL+ + +            +        I +L   L V   
Sbjct: 64  LVVFLYSVSLAADLYPEGWGDWRVMGYILGLILVLVVGLSVGGL 107


>gi|238063437|ref|ZP_04608146.1| monovalent cation/H+ antiporter subunit A [Micromonospora sp. ATCC
           39149]
 gi|237885248|gb|EEP74076.1| monovalent cation/H+ antiporter subunit A [Micromonospora sp. ATCC
           39149]
          Length = 986

 Score = 38.9 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 3/119 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   + ++++ L V  R  + ++  +      +A +F+L GA  VA+   +V    + V 
Sbjct: 629 VVGLVTVVAALLAVGARRRLTAMLLVGVTGYGSAMMFVLHGAPDVALTQFLVETATIAV- 687

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
             F++++  +    +    +R       +G     ++       V +       L F G
Sbjct: 688 --FVLVLRRLPERFSTRPLRRSRWVRRSVGAAVGVVLAGLCLVAVGARTASPISLAFPG 744


>gi|219524214|ref|YP_002456357.1| NADH dehydrogenase subunit 6 [Hydropotes inermis]
 gi|161824391|gb|ABX79766.1| NADH dehydrogenase subunit 6 [Hydropotes inermis]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   ++V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFITGLLMEVVMV 104


>gi|238550689|gb|ACR44533.1| NADH dehydrogenase subunit 6 [Bonasa bonasia]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 46/106 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  F++++  ++Y+G
Sbjct: 2   TYFVIFLGVSFMLGVLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFISLVLFMIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ ++ A  ++   
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVFVVCAGAVMGGL 107


>gi|134096632|ref|YP_001102293.1| large membrane protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133909255|emb|CAL99367.1| conserved large membrane protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 1030

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 3   MQSLFFYLFSFMAIISSF--LVVTVRNPIYSVFSLIFAFVN------AAGLF--LLLGAE 52
           M    F +F+ +A++S    L++ +R+ +  ++ L+   ++       A LF   LLG E
Sbjct: 853 MSDADFSVFALVALLSVLVILMLLLRSVVAPIYLLVSVILSYAAAMGIAVLFWQFLLGGE 912

Query: 53  FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCA 109
               +  + +V  V V   + ++++    E ++   + G    + +    I +A +I  A
Sbjct: 913 LDWSVQPIAFVILVAVGADYNMLLMSRIREESDDGSRAGIARAVATTGGVITSAGIIFAA 972

Query: 110 SNFMVFSAEGEL 121
           S F + S   ++
Sbjct: 973 SMFALMSGTVDI 984


>gi|1171841|sp|P43198|NU6M_CEPGR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394668|emb|CAA52122.1| NADH dehydrogenase subunit 6 [Cepphus grylle]
 gi|21104318|emb|CAC80341.1| NADH dehydrogenase subunit 6 [Cepphus grylle]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVVFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVA 84
           ++V F++ + +       A
Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81


>gi|295641101|gb|ADG22649.1| NADH dehydrogenase subunit 6 [Mustela nivalis]
          Length = 177

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLCFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105


>gi|327202092|gb|AEA36684.1| NADH dehydrogenase subunit 6 [Chrysomyxa rhododendri]
          Length = 157

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 28  PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87
           P+ SV  LI  F+  A   +L    +++++ +VVYVGA+IV  LF+I+M+++        
Sbjct: 1   PVTSVVYLITVFLLVAAYLVLQNMVYLSLVLIVVYVGAIIVLILFVIIMINLQDIRTTLN 60

Query: 88  KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
                 G     ++   + +      + + E  LS   +   N+
Sbjct: 61  IPWSLQG--IASLMFIVIFINIDVSHINAEEYFLSMFQYITLNI 102


>gi|300776594|ref|ZP_07086452.1| sulfatase [Chryseobacterium gleum ATCC 35910]
 gi|300502104|gb|EFK33244.1| sulfatase [Chryseobacterium gleum ATCC 35910]
          Length = 652

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 33/164 (20%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRN------PIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT 58
           S  FYL S + +   FL V+ +       PI  +F L F F    GLF LL   F  +I 
Sbjct: 17  SFLFYLVSSLLLRFGFLAVSFQKADLSLLPIMKIFLLGFLFDFGVGLFFLLPYSFYLLIF 76

Query: 59  LVVYVGA----VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
              Y+ +    +I +  FII +L               L SFF  +   +      NF+ 
Sbjct: 77  PQKYIRSLFNKIITYSTFIIFLLIH-------------LFSFFAEVTFWQEFESRFNFIA 123

Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMI 158
                    ++   NN+          Y  P+ IS  +LL+++I
Sbjct: 124 VDYLVYTYEVI---NNINE-------SYPLPVLISSILLLMTLI 157


>gi|161561751|ref|YP_001586147.1| NADH dehydrogenase subunit 6 [Rhynochetos jubatus]
 gi|143024744|gb|ABO93095.1| NADH dehydrogenase subunit 6 [Rhynochetos jubatus]
          Length = 172

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++ +  V +  +P Y V  L+ A +   G  L LG  FV+++  +VY+G ++V 
Sbjct: 7  FLGGWFVLGALAVASNPSPYYGVVGLVVASIAGCGWLLSLGVSFVSLVLFMVYLGGMLVV 66

Query: 70 FLFIIMMLDIDIEVA 84
          F++ + +       A
Sbjct: 67 FVYSVSLAAEPFPEA 81


>gi|294507715|ref|YP_003571773.1| Na(+)/H(+) antiporter subunit A [Salinibacter ruber M8]
 gi|294344043|emb|CBH24821.1| Na(+)/H(+) antiporter subunit A [Salinibacter ruber M8]
          Length = 794

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 51/112 (45%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ + ++++ +F  +  R+ I  + SL  +  + A LFL  GA  +A    ++    VI+
Sbjct: 604 WVLAILSVVGAFGTLFFRSRIGLITSLGVSGFSIALLFLAFGAPDLAKTQFLIETLTVIL 663

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
             L +  + D+   +   +K      +  +G++ + LI+        +  G+
Sbjct: 664 VVLILTAVSDVKETLTMGQKVTNGAVAAGMGVVVSGLILAVLKLPFENPMGD 715


>gi|255644203|gb|ACU22576.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus]
 gi|255644207|gb|ACU22579.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus]
 gi|255644211|gb|ACU22582.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus]
 gi|255644215|gb|ACU22585.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus]
 gi|255644219|gb|ACU22588.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus]
 gi|255644223|gb|ACU22591.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus]
 gi|255644227|gb|ACU22594.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus]
 gi|255644231|gb|ACU22597.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus]
 gi|255644235|gb|ACU22600.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus]
 gi|255644239|gb|ACU22603.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             +       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSNYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|83816417|ref|YP_445814.1| putative monovalent cation/H+ antiporter subunit A [Salinibacter
           ruber DSM 13855]
 gi|83757811|gb|ABC45924.1| NADH dehydrogenase, putative [Salinibacter ruber DSM 13855]
          Length = 794

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 51/112 (45%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ + ++++ +F  +  R+ I  + SL  +  + A LFL  GA  +A    ++    VI+
Sbjct: 604 WVLAILSVVGAFGTLFFRSRIGLITSLGVSGFSIALLFLAFGAPDLAKTQFLIETLTVIL 663

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
             L +  + D+   +   +K      +  +G++ + LI+        +  G+
Sbjct: 664 VVLILTAVSDVKETLTMGQKVTNGAVAAGMGVVVSGLILAVLKLPFENPMGD 715


>gi|295065635|ref|YP_003587432.1| NADH dehydrogenase subunit 6 [Apalone ferox]
 gi|226838420|gb|ACO83397.1| NADH dehydrogenase subunit 6 [Apalone ferox]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 50/112 (44%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   F +LF    I     V +  +P Y V  LIF  V    + + +G  F++++  ++Y
Sbjct: 1   MMVFFMFLFEVCFIFWVISVASGPSPYYGVVGLIFGAVFGCLMLVGMGGSFISLVLFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +G ++V F + + +      +A       F    +I ++   ++VC   + +
Sbjct: 61  LGGMLVVFAYSVALTGDPYPMAWRSYGDLFYVVGYILLVVVAIMVCFGVWSL 112


>gi|255643935|gb|ACU22375.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643943|gb|ACU22381.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255643987|gb|ACU22414.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644019|gb|ACU22438.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644031|gb|ACU22447.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644035|gb|ACU22450.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644039|gb|ACU22453.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644043|gb|ACU22456.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644051|gb|ACU22462.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++ ++N 
Sbjct: 75  GSDCVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109


>gi|121592328|gb|ABM63263.1| NADH dehydrogenase subunit 6 [Ailuropoda melanoleuca]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +    + S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVSILSIVFVVSFAGFSSKPSPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L VC
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WLSNKAVLGAFIVGLLSELLSVC 105


>gi|134034933|ref|YP_001096532.1| NADH dehydrogenase subunit 6 [Melopsittacus undulatus]
 gi|133712157|gb|ABO36795.1| NADH dehydrogenase subunit 6 [Melopsittacus undulatus]
          Length = 169

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F        ++++ LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G +
Sbjct: 4   FMLFLGVSFVLAALLVASNPSPYYGVVGLVFGSVVGCGWLVSLGVSFVSLVLFMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           +V F++ + +               + G   +G +   ++V    F+ +
Sbjct: 64  LVVFVYSVSLAADPFPQV-------WGGWRVVGYVLGLMLVVGVGFVGW 105


>gi|295641114|gb|ADG22661.1| NADH dehydrogenase subunit 6 [Mustela kathiah]
          Length = 177

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WASNKAVLGAFIVGLLSELLTAC 105


>gi|296099694|gb|ADG95294.1| NADH dehydrogenase subunit 6 [Polypterus palmas polli]
          Length = 167

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 2/110 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS + +IS   V +  +P ++ F L+       G+ +  G  F++MI  ++Y+G 
Sbjct: 2   VLMVVFSVIFLISLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFM 113
           ++V F +   +       A    +     LG  F+ ++   + V    F+
Sbjct: 62  MLVVFAYSAALAAEPYPAAWGSWEVFSYVLGYMFLIVIVWGVFVGDFGFL 111


>gi|296099554|gb|ADG95164.1| NADH dehydrogenase subunit 6 [Polypterus ansorgii]
          Length = 167

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 48/112 (42%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS + +IS   V +  +P ++ F L+       G+ +  G  F++MI  ++Y+G 
Sbjct: 2   VLMVVFSMIFLISLIAVASNPSPYFAAFGLMVGAGAGCGMLVQCGMTFLSMILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           ++V F +   +       A    +       ++  +     V   +F VF +
Sbjct: 62  MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVFFIVGVWAVFVGDFEVFDS 113


>gi|157367480|gb|ABV45612.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367494|gb|ABV45625.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 42/103 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++      +  +P+Y   SLI +     G+ +  G  F+ ++  +VY+G ++V
Sbjct: 6   FIMSVLYVVGFIGFSSKPSPVYGGMSLIVSGGLGCGIIMSSGGSFLGLVVFLVYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            F + I M   +                   ++   +IV   +
Sbjct: 66  VFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFS 108


>gi|159524402|ref|YP_001542753.1| NADH dehydrogenase subunit 6 [Melursus ursinus]
 gi|121592314|gb|ABM63250.1| NADH dehydrogenase subunit 6 [Melursus ursinus]
 gi|195182417|emb|CAQ68467.1| NADH dehydrogenase subunit 6 [Melursus ursinus]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSIVFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105


>gi|19343515|ref|NP_597979.1| NADH dehydrogenase subunit 6 [Ursus arctos]
 gi|19110571|gb|AAL85180.1|AF303110_13 NADH dehydrogenase subunit 6 [Ursus arctos]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105


>gi|32402537|ref|NP_861487.1| NADH dehydrogenase subunit 6 [Procavia capensis]
 gi|32187992|dbj|BAC78410.1| NADH dehydrogenase subunit 6 [Procavia capensis]
          Length = 180

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PI+     I +    +G+ +  G  F+ ++  ++Y
Sbjct: 1   MMMYVTFILSVVFVLGFVGFSSKPSPIFGGLVFIISGGVGSGVIVSSGGSFLGVVMFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +   M   +   +       F GS F+G+L   L+V  
Sbjct: 61  LGGMMVVFGYTTAMATEEYPESWVSNWVVF-GSLFLGVLFEVLVVIW 106


>gi|157367466|gb|ABV45599.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 42/103 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++      +  +P+Y   SLI +     G+ +  G  F+ ++  +VY+G ++V
Sbjct: 6   FIMSVLYVVGFIGFSSKPSPVYGGMSLIVSGGLGCGIIMSSGGSFLGLVVFLVYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            F + I M   +                   ++   +IV   +
Sbjct: 66  VFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFS 108


>gi|166851916|ref|YP_001661379.1| NADH dehydrogenase subunit 6 [Dendrohyrax dorsalis]
 gi|166788074|emb|CAP17666.1| NADH dehydrogenase subunit 6 [Dendrohyrax dorsalis]
          Length = 179

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++      +  +PI+     I +    +GL +  G  F+ ++  +VY+G ++V
Sbjct: 6   FILSVVFVLGFVGFSSKPSPIFGGLVFIVSGGVGSGLIVSSGGSFLGVVMFLVYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            F +   M   +   +        +GS F+G L   L+V  +
Sbjct: 66  VFGYTTAMATEEYPES-WVSNWVVMGSLFLGALFEGLVVIWA 106


>gi|209427670|ref|YP_002274300.1| NADH dehydrogenase subunit 6 [Lutra lutra]
 gi|209361432|gb|ACI43346.1| NADH dehydrogenase subunit 6 [Lutra lutra]
          Length = 177

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105


>gi|5836070|ref|NP_008054.1|ND6_15105 NADH dehydrogenase subunit 6 [Ornithorhynchus anatinus]
 gi|2499295|sp|Q36460|NU6M_ORNAN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1469261|emb|CAA58453.1| NADH dehydrogenase subunit 6 [Ornithorhynchus anatinus]
          Length = 166

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F YL S + ++      +  +PIY   SL+ +     G+ + LG  F+ +I  +VY+G +
Sbjct: 4   FVYLLSILLVLGFMAFASKPSPIYGGLSLVLSGGVGCGIVVSLGGSFLGLIVFLVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +V F +   M   +                 +G+L       + 
Sbjct: 64  LVVFGYTAAMATEEYPETWVDSTVFTNLLIMVGMLGVIWYYFSG 107


>gi|255643995|gb|ACU22420.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
 gi|255644047|gb|ACU22459.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 40/95 (42%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
               V +  +P ++  SL+    +   L    G  F+A+I  ++Y+G ++V F + +   
Sbjct: 15  GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             D       ++     + ++ ++    ++  +N 
Sbjct: 75  GSDYVEGWGTRRISLAAAGYLLLVWGGGVILNTNL 109


>gi|5835469|ref|NP_008392.1|ND6_13342 NADH dehydrogenase subunit 6 [Florometra serratissima]
 gi|2970433|gb|AAD05083.1| NADH dehydrogenase subunit 6 [Florometra serratissima]
          Length = 164

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y+     +  S LV    +P +S   L+   +++  +   LG  F+A I L++Y+G +++
Sbjct: 4   YILVISLLFGSSLVFYSISPYFSALGLVTVSISSCLILSHLGISFLAFILLLIYMGGMLI 63

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F++   + +    +     +   L  F I      L     N +  +     S  +   
Sbjct: 64  VFIYSNALTNDRFPIISNINEIFTLSFFLIFWTIFLLNNQNWNNINNNTNLSSSINIEGA 123

Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIG 159
           + + +I    +        ++G+ILL+++I 
Sbjct: 124 SYLFHISMAPF------FLLAGYILLITLIA 148


>gi|15595856|ref|NP_249350.1| hypothetical protein PA0659 [Pseudomonas aeruginosa PAO1]
 gi|9946536|gb|AAG04048.1|AE004500_14 hypothetical protein PA0659 [Pseudomonas aeruginosa PAO1]
          Length = 358

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L ++        +++G  F+   T+ V V A+     FI++ + I ++        G+L
Sbjct: 186 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 244

Query: 94  GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
                  F+G +   L++        +  G           V+ +  +            
Sbjct: 245 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 290

Query: 150 GFILL--LSMIGAIVL 163
             ILL  + +I AI L
Sbjct: 291 -IILLPIVGIIAAIAL 305


>gi|224588030|ref|YP_002640560.1| NADH dehydrogenase subunit 6 [Martes flavigula]
 gi|223951391|gb|ACN29646.1| NADH dehydrogenase subunit 6 [Martes flavigula]
 gi|295641199|gb|ADG22740.1| NADH dehydrogenase subunit 6 [Martes flavigula]
          Length = 177

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WASNKAVLGAFIVGLLSELLTAC 105


>gi|126792865|gb|ABO27284.1| NADH dehydrogenase subunit 6 [Brotogeris chiriri]
          Length = 167

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++++ LV +  +P Y    L+F  V   G  + LGA FVA+   +VY+G
Sbjct: 2   TYFVLALGVGFVLAALLVASNPSPYYGAVGLVFGSVVGCGWLVSLGASFVALALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            ++V F++ + +            +        +  +    +       V    G
Sbjct: 62  GMLVVFVYSVSLAADPFPQVWGGWRVVVYAFVVLLAVGVGAVGWGLGVRVVDNVG 116


>gi|153124134|ref|YP_001382357.1| NADH dehydrogenase subunit 6 [Enhydra lutris]
 gi|152962773|dbj|BAF74007.1| NADH dehydrogenase subunit 6 [Enhydra lutris]
          Length = 177

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WASNKAVLGAFIVGLLSELLTAC 105


>gi|109156431|ref|YP_654273.1| NADH dehydrogenase subunit 6 [Galemys pyrenaicus]
 gi|56714041|gb|AAW23989.1| NADH dehydrogenase subunit 6 [Galemys pyrenaicus]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 70/159 (44%), Gaps = 12/159 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIAFILSTILVVSFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNYGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117
           +G ++V F +    + ++         +  LG F +G+LA  L +    +     ++ + 
Sbjct: 61  LGGMLVVFGYT-TAMAMEEYPEVWVSNKTVLGLFMLGLLAELLFMVYCIYDEKLEIILNF 119

Query: 118 EGELSRLVFKGNNV-----ENIGKV-LYTQYAYPLEISG 150
            G+   +++   +      E +G   LY+   + + +SG
Sbjct: 120 NGQGDWVIYDTGDSGFFSEEAMGIAGLYSYGTWLVIVSG 158


>gi|71657965|ref|YP_272110.1| NADH dehydrogenase subunit 6 [Gallus lafayetii]
 gi|71040262|dbj|BAE16116.1| NADH dehydrogenase subunit 6 [Gallus lafayettei]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 45/103 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G  F+ ++   +++
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGNWRVVGYGLGFVLVVWMGVVL 104


>gi|264681210|ref|YP_003289091.1| NADH dehydrogenase subunit 6 [Pycnonotus taivanus]
 gi|288903505|ref|YP_003434261.1| NADH dehydrogenase subunit 6 [Pycnonotus sinensis]
 gi|209887444|gb|ACI95063.1| NADH dehydrogenase subunit 6 [Pycnonotus taivanus]
 gi|288548558|gb|ADC52427.1| NADH dehydrogenase subunit 6 [Pycnonotus sinensis]
          Length = 172

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F         +    V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G +
Sbjct: 4   FVLFLGLCFALGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +V F++ + +        E     G +G    +G++     V    F V    G ++ + 
Sbjct: 64  LVVFVYSVSLAA--DPYPEAWADWGVIGYGVGMGLVVMVGFVMGGAFEVLVDGGTVNSVG 121

Query: 126 FKG 128
              
Sbjct: 122 LSS 124


>gi|157367452|gb|ABV45586.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367618|gb|ABV45719.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367674|gb|ABV45771.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
 gi|157367688|gb|ABV45784.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
          Length = 175

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 42/103 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++      +  +P+Y   SLI +     G+ +  G  F+ ++  +VY+G ++V
Sbjct: 6   FVMSVLYVVGFIGFSSKPSPVYGGMSLIVSGGLGCGIIMSSGGSFLGLVVFLVYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            F + I M   +                   ++   +IV   +
Sbjct: 66  VFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFS 108


>gi|295641073|gb|ADG22623.1| NADH dehydrogenase subunit 6 [Mustela sibirica]
 gi|295641087|gb|ADG22636.1| NADH dehydrogenase subunit 6 [Mustela putorius]
          Length = 177

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLCFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105


>gi|270155266|gb|ACZ62666.1| NADH dehydrogenase subunit 6 [Pseudaphritis urvillii]
          Length = 174

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 42/103 (40%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V    +P ++ F L+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFMLGLVLGMVAVAANPSPYFAAFGLVMVAGMGCGVVMGYGGAFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   ++                   F+G++    IVC   +
Sbjct: 67  FAYSAALVAEPYPEGLGSAPVLVYVVGFLGMIGGVGIVCWEGW 109


>gi|291005714|ref|ZP_06563687.1| large membrane protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 998

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 3   MQSLFFYLFSFMAIISSF--LVVTVRNPIYSVFSLIFAFVN------AAGLF--LLLGAE 52
           M    F +F+ +A++S    L++ +R+ +  ++ L+   ++       A LF   LLG E
Sbjct: 821 MSDADFSVFALVALLSVLVILMLLLRSVVAPIYLLVSVILSYAAAMGIAVLFWQFLLGGE 880

Query: 53  FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCA 109
               +  + +V  V V   + ++++    E ++   + G    + +    I +A +I  A
Sbjct: 881 LDWSVQPIAFVILVAVGADYNMLLMSRIREESDDGSRAGIARAVATTGGVITSAGIIFAA 940

Query: 110 SNFMVFSAEGEL 121
           S F + S   ++
Sbjct: 941 SMFALMSGTVDI 952


>gi|227505925|ref|ZP_03935974.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A
           [Corynebacterium striatum ATCC 6940]
 gi|227197447|gb|EEI77495.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A
           [Corynebacterium striatum ATCC 6940]
          Length = 1001

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + + + I+ +       N +  V  +       + LF L GA  +A+  L+V    ++V 
Sbjct: 612 VAALIIIVCAVAATVTDNRLSGVIIVGVTGYALSFLFALHGAPDLALTQLLVET-IIMVL 670

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           F+ ++  +  + E  +  K         +G+     +V
Sbjct: 671 FMLVLRRMPANTEWKQDPKMGRLRAWLAVGVGLTVTLV 708


>gi|115494899|ref|YP_778680.1| NADH dehydrogenase subunit 6 [Rusa unicolor swinhoei]
 gi|114329515|gb|ABI64279.1| NADH dehydrogenase subunit 6 [Rusa unicolor swinhoei]
 gi|117650158|gb|ABK54086.1| NADH dehydrogenase subunit 6 [Rusa unicolor swinhoei]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S M ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIMFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   ++V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVMMV 104


>gi|262399745|gb|ACY65698.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|262399773|gb|ACY65724.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|262399787|gb|ACY65737.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|295641212|gb|ADG22752.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|319656091|gb|ADV58510.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|319656105|gb|ADV58523.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|319656147|gb|ADV58562.1| NADH dehydrogenase subunit 6 [Martes pennanti]
          Length = 177

 Score = 38.5 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105


>gi|159793509|ref|YP_001542779.1| NADH dehydrogenase subunit 6 [Ursus thibetanus]
 gi|121592300|gb|ABM63237.1| NADH dehydrogenase subunit 6 [Ursus thibetanus]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++S     +  +PIY    LI       G+ L  G  F+ ++  +VY
Sbjct: 1   MMMYIVFILSIVFVMSFVGFSSKPSPIYGGLVLIINGGVGCGIVLNFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105


>gi|5834856|ref|NP_006927.1|ND6_10016 NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|71658063|ref|YP_272058.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|71658091|ref|YP_272071.1| NADH dehydrogenase subunit 6 [Gallus gallus gallus]
 gi|128810|sp|P18941|NU6M_CHICK RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|12973|emb|CAA36637.1| unnamed protein product [Gallus gallus]
 gi|28557167|dbj|BAC57587.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|28629851|gb|AAO44996.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|28629864|gb|AAO45008.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|42557373|dbj|BAD11051.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|42557387|dbj|BAD11064.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|42558162|dbj|BAD11126.1| NADH dehydrogenase subunit VI [Gallus gallus]
 gi|71040178|dbj|BAE16038.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|71040192|dbj|BAE16051.1| NADH dehydrogenase subunit 6 [Gallus sonneratii]
 gi|71040206|dbj|BAE16064.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|71040220|dbj|BAE16077.1| NADH dehydrogenase subunit 6 [Gallus gallus gallus]
 gi|71040290|dbj|BAE16142.1| NADH dehydrogenase subunit 6 [Gallus sonneratii]
 gi|283048766|gb|ADB06580.1| NADH dehydrogenase subunit 6 [Gallus gallus jabouillei]
 gi|283048781|gb|ADB06594.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048809|gb|ADB06620.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048837|gb|ADB06646.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048851|gb|ADB06659.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048865|gb|ADB06672.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048879|gb|ADB06685.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048907|gb|ADB06711.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048921|gb|ADB06724.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048935|gb|ADB06737.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048949|gb|ADB06750.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049019|gb|ADB06815.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|283049033|gb|ADB06828.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|283049047|gb|ADB06841.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049061|gb|ADB06854.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|283049075|gb|ADB06867.1| NADH dehydrogenase subunit 6 [Gallus gallus jabouillei]
 gi|283049089|gb|ADB06880.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049103|gb|ADB06893.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049117|gb|ADB06906.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049131|gb|ADB06919.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049145|gb|ADB06932.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049187|gb|ADB06971.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|283049201|gb|ADB06984.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049215|gb|ADB06997.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|283049229|gb|ADB07010.1| NADH dehydrogenase subunit 6 [Gallus gallus murghi]
 gi|283049243|gb|ADB07023.1| NADH dehydrogenase subunit 6 [Gallus gallus murghi]
 gi|283049257|gb|ADB07036.1| NADH dehydrogenase subunit 6 [Gallus gallus murghi]
 gi|283049299|gb|ADB07075.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049313|gb|ADB07088.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049327|gb|ADB07101.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049355|gb|ADB07127.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|283049383|gb|ADB07153.1| NADH dehydrogenase subunit 6 [Gallus gallus]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ ++   +++   
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVWMGVVLGGL 107


>gi|218889382|ref|YP_002438246.1| hypothetical protein PLES_06381 [Pseudomonas aeruginosa LESB58]
 gi|254243736|ref|ZP_04937058.1| hypothetical protein PA2G_04562 [Pseudomonas aeruginosa 2192]
 gi|126197114|gb|EAZ61177.1| hypothetical protein PA2G_04562 [Pseudomonas aeruginosa 2192]
 gi|218769605|emb|CAW25365.1| putative membrane protein [Pseudomonas aeruginosa LESB58]
          Length = 358

 Score = 38.5 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L ++        +++G  F+   T+ V V A+     FI++ + I ++        G+L
Sbjct: 186 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 244

Query: 94  GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
                  F+G +   L++        +  G           V+ +  +            
Sbjct: 245 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 290

Query: 150 GFILL--LSMIGAIVL 163
             ILL  + +I AI L
Sbjct: 291 -IILLPIVGIIAAIAL 305


>gi|254237149|ref|ZP_04930472.1| hypothetical protein PACG_03200 [Pseudomonas aeruginosa C3719]
 gi|126169080|gb|EAZ54591.1| hypothetical protein PACG_03200 [Pseudomonas aeruginosa C3719]
          Length = 358

 Score = 38.5 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L ++        +++G  F+   T+ V V A+     FI++ + I ++        G+L
Sbjct: 186 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 244

Query: 94  GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
                  F+G +   L++        +  G           V+ +  +            
Sbjct: 245 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 290

Query: 150 GFILL--LSMIGAIVL 163
             ILL  + +I AI L
Sbjct: 291 -IILLPIVGIIAAIAL 305


>gi|226453499|ref|YP_002791066.1| NADH dehydrogenase subunit 6 [Rattus exulans]
 gi|160688858|gb|ABX45270.1| NADH dehydrogenase subunit 6 [Rattus exulans]
 gi|160688872|gb|ABX45283.1| NADH dehydrogenase subunit 6 [Rattus exulans]
 gi|160688886|gb|ABX45296.1| NADH dehydrogenase subunit 6 [Rattus exulans]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY  F LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+  FFI  L  EL++
Sbjct: 66  --VFGYTTAMATEEYPETWGSSWFIFGFFILGLFMELLM 102


>gi|5836056|ref|NP_008814.1|ND6_15104 NADH dehydrogenase subunit 6 [Mustelus manazo]
 gi|3582421|dbj|BAA33046.1| NADH dehydrogenase subunit 6 [Mustelus manazo]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F ++     I+    V +  +P Y+   L+ A     GL +  G  F+++I  ++Y+G +
Sbjct: 4   FMFVMMIGLILGLMGVASNPSPYYAALGLVTAAGVGCGLLVGHGGSFMSLILFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +V F +   +         P     +    ++G+    L V    FMV   
Sbjct: 64  LVVFAYTAAL----AAEPYPESWGDWSVLLYVGLYLVGLFVSGKYFMVKGW 110


>gi|295641143|gb|ADG22688.1| NADH dehydrogenase subunit 6 [Neovison vison]
          Length = 177

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105


>gi|270155285|gb|ACZ62680.1| NADH dehydrogenase subunit 6 [Notothenia microlepidota]
          Length = 174

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 3/151 (1%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL  F  ++    V    +P+Y+   L+       G  + LG  F  ++  ++Y+G ++V
Sbjct: 6   YLLMFGVVVGMAAVAANPSPLYAALGLVLVAAMGCGFIMCLGGTFSCLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS--NFMVFSAEGELSRLVF 126
            F + + +   D+               ++G+     +   S    + + + GE S +  
Sbjct: 66  VFAYSVALCAEDLPTGLAEGLVFKAMVGYLGVTGGVALFQWSPEAPLFWWSVGEESEMSV 125

Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSM 157
               +E + +  Y    + L I  + LL+++
Sbjct: 126 MQGEIEGVSEA-YGSGGFLLIICAWALLVAL 155


>gi|289183202|ref|YP_003457186.1| NADH dehydrogenase subunit 6 [Balanoglossus clavigerus]
 gi|288995545|emb|CBH40147.1| NADH dehydrogenase subunit 6 [Balanoglossus clavigerus]
          Length = 159

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70
            SF+ +    LV   R+P +S   ++ A V  +G  +L G+ F+ +I  ++Y+G ++V F
Sbjct: 5   LSFLVVGGGILVFISRSPYFSALGVVGAVVGFSGFLVLSGSVFIGLILFLMYLGGMLVVF 64

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
            +   +              G+  +  + I+   L+
Sbjct: 65  AYSAALASDRYPDV------GWSKAIPLVIIFGGLV 94


>gi|294494689|ref|YP_448957.2| NADH dehydrogenase subunit 6 [Cervus elaphus]
 gi|266265871|dbj|BAE66711.2| NADH dehydrogenase subunit 6 [Cervus elaphus]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVVGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   ++V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEIVMV 104


>gi|108773480|gb|ABG11772.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|108773536|gb|ABG11824.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|108773550|gb|ABG11837.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|108773564|gb|ABG11850.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|157092680|gb|ABV22519.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228014874|gb|ACP50291.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228014888|gb|ACP50304.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228014972|gb|ACP50382.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228014986|gb|ACP50395.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228015000|gb|ACP50408.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228015014|gb|ACP50421.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228015028|gb|ACP50434.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228015042|gb|ACP50447.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|291464877|gb|ADE05950.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|291464891|gb|ADE05963.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|296041288|gb|ADG85632.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|296041302|gb|ADG85645.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY  F LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+ SFF+  L  EL+V
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFSFFVLGLFMELVV 102


>gi|115494787|ref|YP_778836.1| NADH dehydrogenase subunit 6 [Erignathus barbatus]
 gi|115344981|emb|CAJ57025.1| NADH dehydrogenase subunit 6 [Erignathus barbatus]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +P+Y    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MVTYIVFILSIIFVISFVGFSSKPSPVYGGLVLIIGGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105


>gi|5081453|gb|AAD39389.1|AF123909_1 NADH dehydrogenase subunit 6 [Grus nigricollis]
 gi|224504134|gb|ACN53708.1| NADH dehydrogenase subunit 6 [Grus nigricollis]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|312233449|ref|YP_004021850.1| NADH dehydrogenase subunit 6 [Cervus eldi]
 gi|308277999|gb|ADO27635.1| NADH dehydrogenase subunit 6 [Cervus eldi]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSILFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   ++V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVMMV 104


>gi|218436974|ref|YP_002381181.1|ND6_23367 NADH dehydrogenase subunit 6 [Rattus tanezumi]
 gi|160688900|gb|ABX45309.1| NADH dehydrogenase subunit 6 [Rattus tanezumi]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY  F LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
             +F         E  E      F+  FF+  L  EL++    ++
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELVMFYLLYL 108


>gi|295442710|ref|YP_003595316.1| NADH dehydrogenase subunit 6 [Cuora galbinifrons]
 gi|190148575|gb|ACE63319.1| NADH dehydrogenase subunit 6 [Cuora galbinifrons]
          Length = 174

 Score = 38.5 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   ++     V     +  F G +++ I+   ++       ++S EG  +  V 
Sbjct: 64  LVIFAYSSALMAEPFPVGWVSLEGVFYGLYYLFII---MVFVQMGCHLWSIEGIGADTVD 120

Query: 127 KGN 129
            G 
Sbjct: 121 AGG 123


>gi|288903215|ref|YP_003433824.1| NADH dehydrogenase subunit 6 [Sagitta enflata]
 gi|288451130|dbj|BAI68190.1| NADH dehydrogenase subunit 6 [Sagitta enflata]
          Length = 152

 Score = 38.5 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          ++S + ++SS  +V   +PI S   L+   VN + + L +   F+ M+  +VYVG ++V 
Sbjct: 18 VWSIILVLSSMFMVV-ESPISSGLLLVMMLVNMS-ILLSMKNGFMGMVLFIVYVGGIMVL 75

Query: 70 FLFIIMMLDIDIEVAEPRKKRGFL 93
          F + +MM  +     +      F+
Sbjct: 76 FTYCLMMSPLQFFNKKKYYGTMFV 99


>gi|260150647|ref|YP_003208139.1| NADH dehydrogenase subunit 6 [Quasipaa spinosa]
 gi|212656683|gb|ACJ36248.1| NADH dehydrogenase subunit 6 [Quasipaa spinosa]
          Length = 165

 Score = 38.5 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLL--GAEFVAMITLVVYVGAVIVFF 70
              +I    V +  +P Y    L+      AG F+L   G  F+A++  +VY+G ++V F
Sbjct: 4   LCLLIGLLGVASNPSPYYGALGLVV--GAGAGCFVLAKGGVTFLALVLFLVYLGGMMVVF 61

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            +   ++          +        +IG++          +     E   +    K +
Sbjct: 62  AYCAALVAEPYPETWGSRVVVVYLMLYIGLVVVGWGAFGKYWGEVGGEWVRTWWAMKSS 120


>gi|115494731|ref|YP_778862.1| NADH dehydrogenase subunit 6 [Phoca fasciata]
 gi|115345009|emb|CAJ57051.1| NADH dehydrogenase subunit 6 [Phoca fasciata]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIIGGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105


>gi|262399675|gb|ACY65633.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|262399689|gb|ACY65646.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|262399703|gb|ACY65659.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|262399717|gb|ACY65672.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|262399731|gb|ACY65685.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|262399801|gb|ACY65750.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|319656119|gb|ADV58536.1| NADH dehydrogenase subunit 6 [Martes pennanti]
 gi|319656133|gb|ADV58549.1| NADH dehydrogenase subunit 6 [Martes pennanti]
          Length = 177

 Score = 38.5 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105


>gi|28301766|ref|NP_783566.1| NADH dehydrogenase subunit 6 [Muntiacus muntjak]
 gi|28207788|gb|AAO32139.1| NADH dehydrogenase subunit 6 [Muntiacus muntjak]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEIWLSSK-AVLGAFITGLLMEAAMV 104


>gi|55583438|ref|YP_138277.1| NADH dehydrogenase subunit 6 [Hyla chinensis]
 gi|46981619|gb|AAT07871.1| NADH dehydrogenase subunit 6 [Hyla chinensis]
          Length = 165

 Score = 38.5 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 43/103 (41%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +LF    +     V +  +P Y+   L+ +      + +  GA F++++  +VY+G ++V
Sbjct: 3   FLFEVGLVAGFLAVASNPSPYYAALGLVVSAGVGCLILMYGGASFLSLVLFLVYLGGMMV 62

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            F +   ++      A            ++ +L+   ++   +
Sbjct: 63  VFAYSAALVAEPYPEAWGSVGVVIYLVGYLVLLSLWWLIGGGS 105


>gi|110189674|ref|AP_004903.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|1352596|sp|P03926|NU6M_RAT RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|639985|emb|CAA32965.1| NADH subunit 6 [Rattus norvegicus]
 gi|19577325|emb|CAD21570.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|54145383|gb|AAV31050.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|108773493|gb|ABG11784.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|108773508|gb|ABG11798.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|108773511|gb|ABG11800.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|108773578|gb|ABG11863.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|108773592|gb|ABG11876.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|108773606|gb|ABG11889.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|108773620|gb|ABG11902.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|157092694|gb|ABV22526.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228014902|gb|ACP50317.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228014916|gb|ACP50330.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228014930|gb|ACP50343.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|228014944|gb|ACP50356.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|291464905|gb|ADE05976.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
 gi|291464919|gb|ADE05989.1| NADH dehydrogenase subunit 6 [Rattus norvegicus]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY  F LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+ SFF+  L  EL+V
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFSFFVLGLFMELVV 102


>gi|288903540|ref|YP_003434294.1| NADH dehydrogenase subunit 6 [Cervus elaphus yarkandensis]
 gi|285013456|gb|ADC32733.1| NADH dehydrogenase subunit 6 [Cervus elaphus yarkandensis]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   ++V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVVMV 104


>gi|108793264|ref|YP_636917.1| NADH dehydrogenase subunit 6 [Lophiomus setigerus]
 gi|25005633|dbj|BAC23292.1| NADH dehydrogenase subunit 6 [Lophiomus setigerus]
          Length = 174

 Score = 38.5 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 40/102 (39%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    I+   +V + R+P ++   L+    ++ G+ +  G  F+ ++  ++Y+G ++V 
Sbjct: 7   LFLVSLIMGMVVVASNRSPYFAALGLVVVAGSSCGILVGCGGSFLPLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           F +   +                     +G +   L+     
Sbjct: 67  FAYSTALAAEPYPDGYLGGSPLVSMIMCLGAVGVLLVYLFGG 108


>gi|189164468|gb|ACD77405.1| NADH dehydrogenase subunit 6 [Hypsiglena chlorophaea chlorophaea]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 3/134 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+M +  F +     I     +     P   V +L+          ++LG  F A++  +
Sbjct: 1   MIMMNYLFSVVMVFVIFGVLALGVTVVPYQGVVALMGVSFICCVFMVMLGRTFAALVMYI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VY+G +IV F + + +   +++   V   +    FL   F+G L   L+      +++  
Sbjct: 61  VYLGGLIVVFSYCVSVEKDEVDDYGVVGFKYFVIFLSVLFVGFLWWVLVGEVGGLLIYVN 120

Query: 118 EGELSRLVFKGNNV 131
             +L  L   G++V
Sbjct: 121 WEDLVCLEVNGSSV 134


>gi|115494591|ref|YP_778810.1| NADH dehydrogenase subunit 6 [Leptonychotes weddellii]
 gi|115344953|emb|CAJ56999.1| NADH dehydrogenase subunit 6 [Leptonychotes weddellii]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105


>gi|102580664|gb|ABF70974.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048795|gb|ADB06607.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048823|gb|ADB06633.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048963|gb|ADB06763.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048977|gb|ADB06776.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283048991|gb|ADB06789.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|283049005|gb|ADB06802.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049159|gb|ADB06945.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|283049173|gb|ADB06958.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus]
 gi|283049285|gb|ADB07062.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049369|gb|ADB07140.1| NADH dehydrogenase subunit 6 [Gallus gallus]
 gi|283049397|gb|ADB07166.1| NADH dehydrogenase subunit 6 [Gallus gallus]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ ++   +++   
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVWMGVVLGGL 107


>gi|317134202|ref|YP_004123413.1| NADH dehydrogenase subunit 6 [Rattus sordidus]
 gi|290573452|gb|ADD46568.1| NADH dehydrogenase subunit 6 [Rattus sordidus]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++    +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLVGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+  FF+  L  EL++
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELVM 102


>gi|168481216|gb|ACA24722.1| NADH dehydrogenase subunit 6 [Ursus arctos]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVVFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLIAC 105


>gi|94490681|ref|YP_588197.1| NADH dehydrogenase subunit 6 [Phaethon rubricauda]
 gi|90990895|dbj|BAE92887.1| NADH dehydrogenase subunit 6 [Phaethon rubricauda]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 38/80 (47%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  +     ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVVVLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVA 84
           ++V F++ + +       A
Sbjct: 62 GMLVVFVYSVALAADPFPEA 81


>gi|37620576|gb|AAQ95097.1| NADH dehydrogenase subunit 6 [Leptonychotes weddellii]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105


>gi|317097153|ref|YP_004123281.1| NADH dehydrogenase subunit 6 [Rattus tunneyi]
 gi|290573410|gb|ADD46529.1| NADH dehydrogenase subunit 6 [Rattus tunneyi]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLAGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+  FF+  L  EL++
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELML 102


>gi|115494647|ref|YP_778823.1| NADH dehydrogenase subunit 6 [Hydrurga leptonyx]
 gi|37620574|gb|AAQ95096.1| NADH dehydrogenase subunit 6 [Hydrurga leptonyx]
 gi|115344967|emb|CAJ57012.1| NADH dehydrogenase subunit 6 [Hydrurga leptonyx]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVISFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105


>gi|25057497|ref|NP_739670.1| NADH dehydrogenase subunit 6 [Cataetyx rubrirostris]
 gi|25005549|dbj|BAC23214.1| NADH dehydrogenase subunit 6 [Cataetyx rubrirostris]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 45/111 (40%), Gaps = 1/111 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF    ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TYIMSLFLLGMVLGLVGVASNPSPYFAALGLVVVAGMGCGVLIGFGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMV 114
            ++V F +   +       +   R    ++G + +G+L          + V
Sbjct: 62  GMLVVFAYSAALAAEPYPESWGSRSVMSYVGVYLLGVLLVSGPFWGGWYEV 112


>gi|288908825|dbj|BAI77077.1| NADH dehydrogenase subunit 6 [Zalieutes elater]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 8   FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    F  ++   +VV    +P ++ F L+       G+ +  GA F++++  ++Y+G +
Sbjct: 4   FMFLLFFGLVGGLVVVASNPSPYFAAFGLVIVAGVGCGVLMGAGAGFLSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +V F +   +           +   F    ++ ++     +    +
Sbjct: 64  LVVFAYSAALAAEPYPEGVGSRPVAFSALTYLCVIGLVASMFWGGW 109


>gi|148922598|ref|YP_001293630.1| NADH dehydrogenase subunit 6 [Mammut americanum]
 gi|148540940|gb|ABQ86190.1| NADH dehydrogenase subunit 6 [Mammut americanum]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +I      +  +P+Y   SL+ +     G+ +  G  F+ ++  +VY+G ++V
Sbjct: 6   FIMSVLYVIGFIGFSSKPSPVYGGMSLVVSGGLGCGIVMSSGGSFLGLVVFLVYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            F + I M   +            L +F +G+L   ++V   
Sbjct: 66  VFGYTIAMATEEYPETWGSNV-VVLSAFLVGLLMEIVMVMWM 106


>gi|5835030|ref|NP_007093.1|ND6_10464 NADH dehydrogenase subunit 6 [Cyprinus carpio]
 gi|128813|sp|P24982|NU6M_CYPCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|12840|emb|CAA43338.1| NADH ubiquinone oxidoreductase subunit 6 [Cyprinus carpio]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +  +  +   E    R   G++  + +G+     I     +
Sbjct: 60  LGGMLVVFAYAALAAEPFPEAWGSRSVLGYVLVYLLGVGLVAGIFWGGWY 109


>gi|322422520|ref|YP_004222096.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|322422521|ref|YP_004222097.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525925|gb|ADW41494.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525926|gb|ADW41495.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525944|gb|ADW41507.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525947|gb|ADW41509.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525950|gb|ADW41511.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525953|gb|ADW41513.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525956|gb|ADW41515.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525968|gb|ADW41521.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525970|gb|ADW41522.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525972|gb|ADW41523.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525974|gb|ADW41524.1| NADH dehydrogenase subunit 6 [Penelopides panini]
 gi|320525976|gb|ADW41525.1| NADH dehydrogenase subunit 6 [Penelopides panini]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 6  LFFYLFSFMA-IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          ++F LF  +A ++    V +  +P Y V  L+ A V   G  L LG  F+A+   +VY+G
Sbjct: 2  IYFVLFLGLAFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFIALALFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVA 84
           ++V F++ + +       A
Sbjct: 62 GMLVVFVYSVALAADPFPEA 81


>gi|242624229|ref|YP_003002150.1| NADH dehydrogenase subunit 6 [Polyplectron bicalcaratum]
 gi|166066528|gb|ABY80783.1| NADH dehydrogenase subunit 6 [Polyplectron bicalcaratum]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++ +  V +  +P Y V  L+ A V   G  + LG  F++++  ++Y+G
Sbjct: 2   TYFVIFLGVCFMLGALAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFISLVLFMIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F++ + +       A    +          +L+  L+VC    +   A+   + +
Sbjct: 62  GMLVVFVYSVSLAADLYPEAWGSWR------VVGYVLSFVLVVCVGAVLGGVADSWKAGV 115

Query: 125 VFKGN 129
           V   +
Sbjct: 116 VTVDS 120


>gi|218157342|ref|YP_002364574.1| NADH dehydrogenase subunit 6 [Trogon viridis]
 gi|218157370|ref|YP_002364600.1| NADH dehydrogenase subunit 6 [Eurystomus orientalis]
 gi|218157398|ref|YP_002364626.1| NADH dehydrogenase subunit 6 [Aegotheles cristatus]
 gi|163311715|gb|ABY26869.1| NADH dehydrogenase subunit 6 [Eurystomus orientalis]
 gi|163311729|gb|ABY26882.1| NADH dehydrogenase subunit 6 [Aegotheles cristatus]
 gi|166093137|gb|ABY82567.1| NADH dehydrogenase subunit 6 [Trogon viridis]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 47/103 (45%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +      ++ +F+V +  +P Y V  L+ A V   G  + +GA FV+++  +VY+G ++V
Sbjct: 6   FFLGVCFVLGAFMVASNPSPYYGVVGLVVASVVGCGWLISVGASFVSLVLFMVYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            F++ + +       A    +     + F  ++   L+     
Sbjct: 66  VFVYSVSLAADPFPEALEDWRILGYVAGFALVVGVGLVSGFMG 108


>gi|124055118|gb|ABM89732.1| NADH dehydrogenase subunit 6 [Chamaeleo arabicus]
          Length = 169

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
            V +  +P +   SL  A V  AG+   L + F++++ ++VY+G ++V F++ + M    
Sbjct: 15  GVASNPSPYFGGVSLALASVFGAGIMAGLSSTFISLVLMLVYLGGMLVVFVYSVAMSSDM 74

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
              A   +        F+G L          +
Sbjct: 75  YPEAWGNRSVFLYVIGFLGYLFCLWWYAGGEW 106


>gi|283049271|gb|ADB07049.1| NADH dehydrogenase subunit 6 [Gallus gallus]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLTLFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G  F+ ++   +++   
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVWMGVVLGGL 107


>gi|262399759|gb|ACY65711.1| NADH dehydrogenase subunit 6 [Martes pennanti]
          Length = 177

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYVVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105


>gi|312233519|ref|YP_004021915.1| NADH dehydrogenase subunit 6 [Crocodylus palustris]
 gi|268370950|gb|ACZ02717.1| NADH dehydrogenase subunit 6 [Crocodylus palustris]
 gi|312227677|gb|ADQ52669.1| NADH dehydrogenase subunit 6 [Crocodylus palustris]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F+L   + +IS  LV +     Y V SL+FA +  +GL +  G  F+ ++ L++Y+G 
Sbjct: 3   ITFFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104
           ++V F F +   D                      L   
Sbjct: 63  LLVVFAFCVGFTDDKYCELWGAGGSKVSAYVCGAGLGIG 101


>gi|19481532|gb|AAL88838.1|AF407105_1 NADH dehydrogenase subunit 6 [Anomalospiza imberbis imberbis]
          Length = 159

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 36/70 (51%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G +
Sbjct: 4  FVLFLGLCFVLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|107099625|ref|ZP_01363543.1| hypothetical protein PaerPA_01000641 [Pseudomonas aeruginosa PACS2]
 gi|313111712|ref|ZP_07797505.1| putative membrane protein [Pseudomonas aeruginosa 39016]
 gi|310884007|gb|EFQ42601.1| putative membrane protein [Pseudomonas aeruginosa 39016]
          Length = 360

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L ++        +++G  F+   T+ V V A+     FI++ + I ++        G+L
Sbjct: 188 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 246

Query: 94  GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
                  F+G +   L++        +  G           V+ +  +            
Sbjct: 247 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 292

Query: 150 GFILL--LSMIGAIVL 163
             ILL  + +I AI L
Sbjct: 293 -IILLPIVGIIAAIAL 307


>gi|242624409|ref|YP_003002324.1| NADH dehydrogenase subunit 6 [Gillichthys mirabilis]
 gi|207081468|gb|ACI23017.1| NADH dehydrogenase subunit 6 [Gillichthys mirabilis]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    ++   +V +  +P +    L+       G+ +  GA F++++  ++Y+G ++V 
Sbjct: 7   IFMMGLVLGLVVVASNPSPYFGALGLVVVSGMGCGILMGHGAPFLSLVLFLIYLGGMLVV 66

Query: 70  FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-MVFSAEGELSRLVFK 127
           F +   +  +   E    R      G + + IL    ++    F  ++    E +     
Sbjct: 67  FAYSAALAAEPYPETLGSRSVLVNAGGYMLAILGGSGLLWGEWFGGLWFTSDEGAEFALT 126

Query: 128 GNNVENIG 135
             +   +G
Sbjct: 127 RGDAGGVG 134


>gi|91176228|ref|YP_537169.1| NADH dehydrogenase subunit 6 [Verasper variegatus]
 gi|90287791|gb|ABD92811.1| NADH dehydrogenase subunit 6 [Verasper variegatus]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 43/113 (38%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFVMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F +   +       +         G  ++G +     +    +   S 
Sbjct: 62  GMLVVFAYSAALAAEPYPESWGSWSVLVYGVIYMGGVMLVSGLFWGGWYESSW 114


>gi|218157272|ref|YP_002364428.1| NADH dehydrogenase subunit 6 [Agapornis roseicollis]
 gi|166093081|gb|ABY82515.1| NADH dehydrogenase subunit 6 [Agapornis roseicollis]
          Length = 171

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 40/67 (59%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          L     ++++ LV +  +P Y V  L+F  V A G  + LGA F++++  +VY+G ++V 
Sbjct: 7  LLGVGFVLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVV 66

Query: 70 FLFIIMM 76
          F++ + +
Sbjct: 67 FVYSVSL 73


>gi|317097105|ref|YP_004123241.1| NADH dehydrogenase subunit 6 [Rattus lutreolus]
 gi|290573396|gb|ADD46516.1| NADH dehydrogenase subunit 6 [Rattus lutreolus]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLAGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+  FF+  L  EL++
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFILGFFVLGLFMELLM 102


>gi|154090919|ref|YP_001403166.1| NADH dehydrogenase subunit 6 [Reinhardtius hippoglossoides]
 gi|153581808|emb|CAO79732.1| NADH dehydrogenase 6 [Reinhardtius hippoglossoides]
 gi|153581822|emb|CAO79745.1| NADH dehydrogenase 6 [Reinhardtius hippoglossoides]
 gi|153581836|emb|CAO79758.1| NADH dehydrogenase 6 [Reinhardtius hippoglossoides]
 gi|153581850|emb|CAO79771.1| NADH dehydrogenase 6 [Reinhardtius hippoglossoides]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 42/113 (37%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFAMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGMLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F +   +       +         G  + G +     +    +   S 
Sbjct: 62  GMLVVFAYSAALAAEPYPESWGSWSVMVYGVVYTGGVMLVSGLFWGGWYESSW 114


>gi|19481534|gb|AAL88839.1|AF407106_1 NADH dehydrogenase subunit 6 [Anomalospiza imberbis butleri]
          Length = 159

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 36/70 (51%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G +
Sbjct: 4  FVLFLGLCFVLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|27819327|ref|NP_777301.1| NADH dehydrogenase subunit 6 [Eudyptula minor]
 gi|27764475|gb|AAO23039.1|AF362763_13 NADH dehydrogenase subunit 6 [Eudyptula minor]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V 
Sbjct: 7  FLGVCFVLGGLAVASNPSPYYGVIGLVLASVMGCGWLLSLGVSFVSLVLFMVYLGGMLVV 66

Query: 70 FLFIIMMLDIDIEVAEPRKK 89
          F++ + +             
Sbjct: 67 FVYSVALAADPFPEGWGEWP 86


>gi|288909133|dbj|BAI77363.1| NADH dehydrogenase subunit 6 [Halieutaea stellata]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 11  FSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           F    ++   +VV+   +P ++   L+       GL    GA F++++  ++Y+G ++V 
Sbjct: 7   FLLFGLMGGLMVVSSNPSPYFAALGLVVVAGFGCGLLTGTGAVFLSLVLFLIYLGGMMVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +           +    L   ++ ++    ++    +
Sbjct: 67  FAYSAALAAEPYPEGVGSRPVALLIVMYLFVITIAGVLFGEGW 109


>gi|115494563|ref|YP_778940.1| NADH dehydrogenase subunit 6 [Vulpes vulpes]
 gi|115345121|emb|CAJ57155.1| NADH dehydrogenase subunit 6 [Vulpes vulpes]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S    VT  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFVTKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|34538609|ref|NP_904339.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|62198725|ref|YP_220561.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|128818|sp|P03925|NU6M_MOUSE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|13850|emb|CAA24089.1| unnamed protein product [Mus musculus]
 gi|896301|gb|AAB48655.1| protein 6 [Mus musculus]
 gi|7770110|dbj|BAA95627.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|7798611|dbj|BAA95651.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|7804465|dbj|BAA95664.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|8096303|dbj|BAA95806.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|10336616|dbj|BAB13812.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|32892277|gb|AAP89034.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|33115116|gb|AAN85133.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|34556003|emb|CAD33918.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|34556017|emb|CAD54443.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|38488910|gb|AAR21206.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|41386996|gb|AAS01437.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|41387010|gb|AAS01450.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|41387024|gb|AAS01463.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|41387038|gb|AAS01476.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|62461721|gb|AAX83023.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|68349598|gb|AAY96700.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|68349612|gb|AAY96713.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|74148809|dbj|BAE24323.1| unnamed protein product [Mus musculus]
 gi|74209780|dbj|BAE23604.1| unnamed protein product [Mus musculus]
 gi|118200625|gb|ABK79104.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200639|gb|ABK79117.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200653|gb|ABK79130.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200667|gb|ABK79143.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200681|gb|ABK79156.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200695|gb|ABK79169.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200709|gb|ABK79182.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200723|gb|ABK79195.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200737|gb|ABK79208.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200751|gb|ABK79221.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200765|gb|ABK79234.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200779|gb|ABK79247.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|118200821|gb|ABK79286.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|161824331|gb|ABX79713.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|161824373|gb|ABX79752.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|167783113|gb|ACA01535.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|221664489|gb|ACM24370.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664503|gb|ACM24383.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664517|gb|ACM24396.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664531|gb|ACM24409.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664545|gb|ACM24422.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664559|gb|ACM24435.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664587|gb|ACM24461.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664601|gb|ACM24474.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664615|gb|ACM24487.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664629|gb|ACM24500.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664643|gb|ACM24513.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664657|gb|ACM24526.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664671|gb|ACM24539.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664685|gb|ACM24552.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664699|gb|ACM24565.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664713|gb|ACM24578.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664727|gb|ACM24591.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664741|gb|ACM24604.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664755|gb|ACM24617.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664769|gb|ACM24630.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664783|gb|ACM24643.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664797|gb|ACM24656.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664811|gb|ACM24669.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664825|gb|ACM24682.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664839|gb|ACM24695.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|221664853|gb|ACM24708.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|225423209|gb|ACN91106.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|259020086|gb|ACV90283.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|259020100|gb|ACV90296.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|259020114|gb|ACV90309.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus]
 gi|312844600|gb|ADR03167.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|321401321|gb|ADW83077.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|325511955|gb|ADZ23177.1| NADH dehydrogenase subunit 6 [Mus musculus]
 gi|223448|prf||0806162M protein URF6
          Length = 172

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++    +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FVLSSLFLVGCLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   M   +            LG   +G++    ++C  N+
Sbjct: 66  VFGYTTAMATEEYPETWG-SNWLILGFLVLGVIMEVFLICVLNY 108


>gi|25057841|ref|NP_740073.1| NADH dehydrogenase subunit 6 [Caranx melampygus]
 gi|25006080|dbj|BAC23694.1| NADH dehydrogenase subunit 6 [Caranx melampygus]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YLF F  +     V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFIMYLFLFCFVFGLIAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
            ++V F +   +       AEP  +        + ++A  LIV   + + +    E S 
Sbjct: 62  GMLVVFAYSAAL------AAEPYPETWGSRPVTMYMIAYVLIVVVVSGLFWGGWYESSW 114


>gi|193290208|ref|YP_002000325.1| NADH dehydrogenase subunit 6 [Ochotona curzoniae]
 gi|186461001|gb|ABP99058.1| NADH dehydrogenase subunit 6 [Ochotona curzoniae]
          Length = 174

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L S + +       +  +PIY    LI +     G+ L  GA F+ ++  +VY+G ++V 
Sbjct: 7   LLSMVFVAGFVGFSSKPSPIYGGLCLIVSGGVGCGIILSYGASFLGLMMFLVYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            +F         E  E       +    +  L  ELI+   
Sbjct: 66  -VFGYTTAMATEEYPESWGSNVVVLGTLVAGLLMELILVGL 105


>gi|116054384|ref|YP_788829.1| hypothetical protein PA14_08450 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115589605|gb|ABJ15620.1| putative membrane protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 360

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L ++        +++G  F+   T+ V V A+     FI++ + I ++        G+L
Sbjct: 188 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 246

Query: 94  GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
                  F+G +   L++        +  G           V+ +  +            
Sbjct: 247 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 292

Query: 150 GFILL--LSMIGAIVL 163
             ILL  + +I AI L
Sbjct: 293 -IILLPIVGIIAAIAL 307


>gi|295641129|gb|ADG22675.1| NADH dehydrogenase subunit 6 [Mustela frenata]
          Length = 177

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +    +  +         +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYT-TAMAAEQYPEVWVSNKAVLGAFIVGLLSELLTAC 105


>gi|195934708|ref|YP_002120644.1| NADH dehydrogenase subunit 6 [Ailurus fulgens]
 gi|155368567|emb|CAM98583.1| NADH dehydrogenase subunit 6 [Ailurus fulgens]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +IS     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVISFVGFSSKPSPIYGGLVLIVSGAVGCGIILSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFILGLLSELLTAC 105


>gi|5835049|ref|NP_007106.1|ND6_10470 NADH dehydrogenase subunit 6 [Didelphis virginiana]
 gi|730210|sp|P41315|NU6M_DIDMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|555591|emb|CAA82688.1| NADH dehydrogenase subunit 6 [Didelphis virginiana]
          Length = 168

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 45/107 (42%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  Y+ S + +I      +  +PIY   SL+ +     G+ + L   F+ ++  +VY
Sbjct: 1   MKMMTIYIISLLLMIGFVAFASKPSPIYGGLSLVVSGGLGCGMVVSLEDVFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +   M   +           F+   F+ +L       +
Sbjct: 61  LGGMLVVFGYTTAMATEEYPETWVGNVVAFIMLLFVLLLQVGWYFMS 107


>gi|157367438|gb|ABV45573.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 43/103 (41%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++      +  +P+Y   SLI +     G+ +  G  F++++  +VY+G ++V
Sbjct: 6   FIMSVLYVVGFIGFSSKPSPVYGGMSLIVSGGLGCGIIMSSGGSFLSLVVFLVYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            F + I M   +                   ++   +IV   +
Sbjct: 66  VFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFS 108


>gi|239997577|gb|ACS37090.1| NADH dehydrogenase subunit 6 [Grandisonia alternans]
          Length = 167

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F  FS + +I +  V +  +P ++   L+        + + +G  F++++  ++Y
Sbjct: 1  MEYMVFLGFSGL-VIGTIGVASNPSPYFAALGLVVTAAAGCWVLISMGMSFLSLVLFLIY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92
          +G ++V F +   M       A       F
Sbjct: 60 LGGMLVVFAYSSAMAAEPYPDAWGNWSVVF 89


>gi|207559992|gb|ACI24586.1| NADH dehydrogenase subunit 6 [Ovibos moschatus]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYLVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-AVLGAFVTGLLMEFLMV 104


>gi|21908058|ref|NP_663803.1|ND6_16534 NADH dehydrogenase subunit 6 [Muntiacus reevesi]
 gi|116235413|ref|YP_794160.1| NADH dehydrogenase subunit 6 [Muntiacus reevesi micrurus]
 gi|21842402|gb|AAM77766.1|AF527537_13 NADH dehydrogenase subunit 6 [Muntiacus reevesi]
 gi|116006455|gb|ABJ51761.1| NADH dehydrogenase subunit 6 [Muntiacus reevesi micrurus]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEIWLSSK-AVLGAFITGLLMEVAMV 104


>gi|327492679|ref|YP_004347572.1| NADH dehydrogenase subunit 6 [Lagocephalus laevigatus]
 gi|327392586|dbj|BAK10014.1| NADH dehydrogenase subunit 6 [Lagocephalus laevigatus]
          Length = 172

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 36/92 (39%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             VV+  +P +   SL+       G+ +  G  F++++  ++Y+G ++V F +   +   
Sbjct: 17  IAVVSNPSPYFGALSLVMVAGFGCGILVWHGGSFLSLVLFLIYLGGMLVVFAYSAALAAE 76

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
                            ++G++    I+    
Sbjct: 77  PYPETFGSWPVFVCMLMYLGVVVVMFILFLGG 108


>gi|110747785|gb|ABG89400.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747789|gb|ABG89403.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747793|gb|ABG89406.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747797|gb|ABG89409.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747809|gb|ABG89418.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747813|gb|ABG89421.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747817|gb|ABG89424.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747821|gb|ABG89427.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747833|gb|ABG89436.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747837|gb|ABG89439.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747845|gb|ABG89445.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747849|gb|ABG89448.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747861|gb|ABG89457.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747877|gb|ABG89469.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747901|gb|ABG89487.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747913|gb|ABG89496.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747917|gb|ABG89499.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747945|gb|ABG89520.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747957|gb|ABG89529.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747961|gb|ABG89532.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747969|gb|ABG89538.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748001|gb|ABG89562.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748005|gb|ABG89565.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748009|gb|ABG89568.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748013|gb|ABG89571.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748025|gb|ABG89580.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748029|gb|ABG89583.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748037|gb|ABG89589.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748049|gb|ABG89598.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748073|gb|ABG89616.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748077|gb|ABG89619.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748081|gb|ABG89622.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748085|gb|ABG89625.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748105|gb|ABG89640.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748109|gb|ABG89643.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748125|gb|ABG89655.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748129|gb|ABG89658.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748133|gb|ABG89661.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748145|gb|ABG89670.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748157|gb|ABG89679.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748165|gb|ABG89685.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748181|gb|ABG89697.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748185|gb|ABG89700.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748193|gb|ABG89706.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748213|gb|ABG89721.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|218783291|dbj|BAH03669.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F + S + ++      +  +P+Y   SL+ +     G+ +  G  F+ ++  +VY
Sbjct: 1   MMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMGSGGSFLGLVVFLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F + I M   +            LG+F +G+L    ++   
Sbjct: 60  LGGMMVVFGYTIAMATEEYPETWGSNV-VVLGAFLVGLLMEVFMIMWL 106


>gi|154760708|ref|YP_001425509.1| NADH dehydrogenase subunit 6 [Osteolaemus tetraspis]
 gi|154425195|emb|CAM35770.1| NADH dehydrogenase subunit 6 [Osteolaemus tetraspis]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F++   + +IS  LV       Y V SL+FA +  + L +  G  F+ ++ L++Y+G +
Sbjct: 4   MFFILCCLMMISVVLVAFGVTIHYGVVSLLFATMLGSSLLVAGGGSFMPLVVLLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102
           +V F F +   D              L   +   L 
Sbjct: 64  LVVFAFCVGFTDDKYCEFWGSGGSKGLAYIWWAGLG 99


>gi|56548745|ref|YP_161180.1| NADH dehydrogenase subunit 6 [Metachirus nudicaudatus]
 gi|56398474|emb|CAG26353.1| NADH dehydrogenase subunit 6 [Metachirus nudicaudatus]
          Length = 168

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 45/107 (42%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  Y+ S + +I      +  +PIY   SL+ +     G+ + L   F+ ++  +VY
Sbjct: 1   MKMMTIYIISLLLMIGFVAFASKPSPIYGGLSLVVSGGLGCGMVVSLEDVFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +   M   +           F+   F+ +L       +
Sbjct: 61  LGGMLVVFGYTTAMATEEYPETWVGNVVAFIMLLFVLLLQVGWYFMS 107


>gi|21449914|ref|NP_659311.1| NADH dehydrogenase subunit 6 [Macroscelides proboscideus]
 gi|21425378|emb|CAD13406.1| NADH dehydrogenase subunit 6 [Macroscelides proboscideus]
          Length = 175

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L S + ++    V +  +P++   SLI +     GL +  G  F+ ++  +VY+G ++V 
Sbjct: 7   LLSMVFVLGVVGVSSKPSPVFGGVSLIISGGAGCGLIVSSGGSFLGLMVFLVYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            +F         E  E       +    +  +  EL+V       FS EG    +    N
Sbjct: 66  -VFGYTTAMATEEYPEAWVSSKVVLWSVVIGVFVELVVLMLLASGFSYEGYGMVVGQYSN 124

Query: 130 NVENIG 135
           NV   G
Sbjct: 125 NVVEYG 130


>gi|114705421|ref|ZP_01438329.1| putative cation efflux system protein [Fulvimarina pelagi HTCC2506]
 gi|114540206|gb|EAU43326.1| putative cation efflux system protein [Fulvimarina pelagi HTCC2506]
          Length = 788

 Score = 38.1 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++   + +     VV  RN + ++ SL       A +F+L GA  +A    +V   +V++
Sbjct: 611 WIILGLIVFGILAVVVSRNRLQAIVSLGIQGYAVAFIFMLQGAPDLAFTQFMVETLSVVI 670

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
                ++M  + +  ++ R     L    IG+LA          +V S
Sbjct: 671 L---ALVMTRLKLSPSDHRPLAQKLPDATIGVLAGIGFGLFLLAVVQS 715


>gi|115494605|ref|YP_778784.1| NADH dehydrogenase subunit 6 [Mirounga leonina]
 gi|37620580|gb|AAQ95099.1| NADH dehydrogenase subunit 6 [Mirounga leonina]
 gi|115344925|emb|CAJ56973.1| NADH dehydrogenase subunit 6 [Mirounga leonina]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVISFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105


>gi|37620578|gb|AAQ95098.1| NADH dehydrogenase subunit 6 [Mirounga angustirostris]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVVSFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIMGLLSELLLAC 105


>gi|28867229|ref|NP_789859.1| NADH dehydrogenase subunit 6 [Muntiacus crinifrons]
 gi|28569629|gb|AAO43649.1| NADH dehydrogenase subunit 6 [Muntiacus crinifrons]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEIWLSSK-AVLGAFITGLLMEIAMV 104


>gi|170676093|ref|YP_001742116.1| NADH dehydrogenase subunit 6 [Spilogale putorius]
 gi|155368581|emb|CAM98596.1| NADH dehydrogenase subunit 6 [Spilogale putorius]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY   +LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVMGFVGFSSKPSPIYGGLALIISGGVGCAIVLCFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M            K   L +F +G++   L+VC
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEVWVSSK-IVLWAFIMGLMLESLVVC 105


>gi|296940306|ref|YP_003667985.1| NADH dehydrogenase subunit 6 [Acryllium vulturinum]
 gi|224503980|gb|ACN53565.1| NADH dehydrogenase subunit 6 [Acryllium vulturinum]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++ +  V +  +P Y V  L+ A V   G  + LG  F++++  ++Y+G
Sbjct: 2  TYFMIFLGVSFMLGTLAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFISLVLFMIYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR 86


>gi|83309098|ref|YP_423999.1| NADH dehydrogenase subunit 6 [Echymipera rufescens australis]
 gi|55416229|gb|AAV50094.1| NADH dehydrogenase subunit 6 [Echymipera rufescens australis]
          Length = 166

 Score = 38.1 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +P+Y   SL+ +      + + LG  F+ ++  +VY
Sbjct: 1   MKMMVIFLFSVLLIFGFVAFASKPSPVYGGLSLVASGGFGCAIVVSLGDTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F +   M   +                 +  L+  +I      + +SA GE+
Sbjct: 61  LGGMLVVFGYTAAMATEEYPET---------WVGNMVALSMLMIALLMEIIWYSATGEV 110


>gi|213965057|ref|ZP_03393255.1| NADH ubiquinone oxidoreductase subunit 5 [Corynebacterium
           amycolatum SK46]
 gi|213952171|gb|EEB63555.1| NADH ubiquinone oxidoreductase subunit 5 [Corynebacterium
           amycolatum SK46]
          Length = 1061

 Score = 38.1 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           + + II++      +N +  V  +       A +F + GA  +A+  L+V   + ++ F+
Sbjct: 643 ALIMIIAALAATQQKNRLSGVILVGVTGYGLAIIFAMYGAPDLALTQLLVETVS-MIVFV 701

Query: 72  FIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            ++  L      + PR  + R +L       +         +       G++  L     
Sbjct: 702 LVLRTLSPRAPASNPRWIRHRAWLAIAVGVTVPVLAAYAMGSRRTEPISGDIPPLAHDIG 761

Query: 130 N 130
           +
Sbjct: 762 H 762


>gi|209886965|ref|YP_002290829.1| NADH dehydrogenase subunit 6 [Bungarus fasciatus]
 gi|170774105|gb|ACB36676.1| NADH dehydrogenase subunit 6 [Bungarus fasciatus]
          Length = 164

 Score = 38.1 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 9   YLFSFMAIISSFLVVTVRN---PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           YLF F+ +     VV +     P + V +L+        L +LLG  F A+I  +VY+G 
Sbjct: 3   YLFGFILVFVVLGVVALSMTFAPYHGVIALMGVSFFCCVLMVLLGRTFAALIMYIVYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F + + +        +       +      ++   L       +V+S   +L  + 
Sbjct: 63  LVVVFGYCVSIEKGKNGFFKVNGFSYVIVFLIASLV--SLYSDFGGLLVYSNWEDLVCME 120

Query: 126 FKGNNV 131
             G++V
Sbjct: 121 VNGSSV 126


>gi|280978362|ref|YP_003345293.1| NADH dehydrogenase subunit 6 [Hoplunnis punctata]
 gi|271280776|dbj|BAI53469.1| NADH dehydrogenase subunit 6 [Hoplunnis punctata]
          Length = 172

 Score = 38.1 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 3/109 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F  F  M ++    V +  +P ++   L+ +     G+    G  FV+++  ++Y
Sbjct: 1   MSYFIFLFF-VMFVLGVIGVASNPSPYFAALGLVLSAGGGCGILAGYGGSFVSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V  +F            E        G     +L   L VC   
Sbjct: 60  LGGMLV--VFAYSAALAAEPYPEGWGDWSVFGRILGCVLIVFLGVCLGG 106


>gi|156766018|ref|YP_001434574.1| NADH dehydrogenase subunit 6 [Asymmetron inferum]
 gi|156713105|dbj|BAF76605.1| NADH dehydrogenase subunit 6 [Asymmetron inferum]
          Length = 166

 Score = 38.1 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 45/103 (43%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L +FM ++++ +V+   +P +   ++    +  +     L   F AMI +++Y+G ++V 
Sbjct: 4   LLNFMILLTAMMVIRATSPYFGALAMAMLSLLISITMFQLNLIFPAMILMLIYLGGMLVV 63

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F++        + +        F+     G LA   +    NF
Sbjct: 64  FVYSTAYSADLMPLPVNMTLTLFIAISGTGFLAIFSLSPMENF 106


>gi|19481570|gb|AAL88857.1|AF407124_1 NADH dehydrogenase subunit 6 [Prunella modularis]
          Length = 159

 Score = 38.1 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           +G ++V F++ + +        E     G +G  F  +L   + +        S
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPEAWADWGVVGYGFGMVLVIVVGLAVGGVSGLS 111


>gi|302632662|ref|YP_003848758.1| NADH dehydrogenase subunit 6 [Cuora pani]
 gi|259122043|gb|ACV92117.1| NADH dehydrogenase subunit 6 [Cuora pani]
          Length = 174

 Score = 38.1 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   ++     V     +  F G +++ I+   ++       ++S EG  +  V 
Sbjct: 64  LVIFAYSSALMAEPFPVGWVSLEGVFYGLYYLFII---MVFMQMGCHLWSIEGIGADTVD 120

Query: 127 KGN 129
            G 
Sbjct: 121 AGG 123


>gi|237869096|ref|YP_002907424.1| NADH dehydrogenase subunit 6 [Anyperodon leucogrammicus]
 gi|237653089|gb|ACR09345.1| NADH dehydrogenase subunit 6 [Anyperodon leucogrammicus]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           I+ +  V +  +P +    L+       G+ +  G+ F+A+I  ++Y+G ++V F +   
Sbjct: 13  IVGAIAVASNPSPFFGALGLVMVAGVGCGVLVEYGSPFLALILFLIYLGGMLVVFAYSAA 72

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +       AEP  +     +  + +    ++V     M +   G
Sbjct: 73  L------AAEPYPESWLNPAIVVYMCCYAVVVMVGVSMFWHEWG 110


>gi|5836000|ref|NP_008762.1|ND6_15098 NADH dehydrogenase subunit 6 [Cavia porcellus]
 gi|5679809|emb|CAB51829.1| NADH dehydrogenase subunit 6 [Cavia porcellus]
          Length = 176

 Score = 38.1 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     Y  S + ++    +    +P+Y   +L+ +      L L  G  F+ ++  ++Y
Sbjct: 1   MAVNVMYFLSILFVMGFVCLSAKPSPVYGGLTLVVSGGIGCMLILSQGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   +        E   +         G L   LI+       +++  ++ 
Sbjct: 61  LGGMMVVFGYTTALAT------ERYPETWASSMIIWGTLLLGLIMEFLLLYWWASNDQIE 114

Query: 123 RLV 125
            LV
Sbjct: 115 ILV 117


>gi|297624893|ref|YP_003706327.1| multisubunit sodium/proton antiporter subunit MrpA [Truepera
           radiovictrix DSM 17093]
 gi|297166073|gb|ADI15784.1| multisubunit sodium/proton antiporter, MrpA subunit (2.A.63.1)
           [Truepera radiovictrix DSM 17093]
          Length = 775

 Score = 38.1 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ + + ++ S  VV  R+ + +V +L  A  + A LF+L  A  +A+  L V   +VI+
Sbjct: 601 WVLAILCLLGSVFVVLARSRLAAVAALGIAGYSLALLFVLFSAPDLALTQLFVETLSVII 660

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
             L II +  +  +      KR  +    + +LA  LI      +            ++ 
Sbjct: 661 LTLIIIHLPQLLRDDEMHDSKRPVVRDVSVSVLAGLLITALVWSVTSLPLDRAVPAFYEA 720

Query: 129 NN 130
           N+
Sbjct: 721 NS 722


>gi|159524422|ref|YP_001542740.1| NADH dehydrogenase subunit 6 [Tremarctos ornatus]
 gi|121592356|gb|ABM63289.1| NADH dehydrogenase subunit 6 [Tremarctos ornatus]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S   ++         +P+Y    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MVTYTVFILSVGFVMGFVGFSXKPSPVYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M            K   LG+F  G+L+  L+VC
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEVWISNK-AVLGAFIAGLLSELLVVC 105


>gi|108793502|ref|YP_636982.1| NADH dehydrogenase subunit 6 [Aspasma minima]
 gi|25006192|dbj|BAC23798.1| NADH dehydrogenase subunit 6 [Aspasma minima]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +     +I    V +V +P +    L+ A   + G+ L  G  F+++I  ++Y+G +
Sbjct: 4   IFLVPIGALVIGLVGVASVPSPYFGALGLVLAAGGSCGVLLSQGGTFLSLILFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +          +A       +       +    ++     FMVF  +   +    
Sbjct: 64  LVVFAY-------TAAIAADPYPEAWGSLSVCCLGGGYMMGIWVGFMVFKEQWGHAWWTI 116

Query: 127 KG 128
            G
Sbjct: 117 LG 118


>gi|198434256|ref|XP_002126573.1| PREDICTED: similar to G-protein coupled receptor GRL101
           precursor-like [Ciona intestinalis]
          Length = 1016

 Score = 38.1 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFA----FVNAAGLFLLLGAEFVAMITLVV 61
           + F+L   +A++ + +V T      SV  LI +     +  + L  L+    V+   + +
Sbjct: 663 VIFWLLGSLALLGNIVVFTT-----SVLELIISGNTDLLKTSFLTFLINLS-VSDSLMGI 716

Query: 62  YVGAVI-VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEG 119
           Y+ A+  V   F       D +               I   ++A ++   + F +FS   
Sbjct: 717 YLLAISGVGVQFSGSYCHHDAQWRSSSLCSFLGTLVVISTEVSALIMATMATFRLFSVY- 775

Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153
                  K  NV+N+G ++ +  A+   + G +L
Sbjct: 776 ----FPIKMRNVKNLGYIIPSICAW---LIGILL 802


>gi|226463983|ref|YP_002734940.1| NADH dehydrogenase subunit 6 [Chamaeleo arabicus]
 gi|124055104|gb|ABM89719.1| NADH dehydrogenase subunit 6 [Chamaeleo arabicus]
          Length = 169

 Score = 38.1 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
            V +  +P +   SL  A V  AG+   L + F++++ ++VY+G ++V F++ + M    
Sbjct: 15  GVASNPSPYFGGVSLALASVFGAGIMAGLSSTFISLVLMLVYLGGMLVVFVYSVAMSSDM 74

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
              A   +        F+G L          +
Sbjct: 75  YPEAWGNRSVFLYVVGFLGYLFCLWWYAGGEW 106


>gi|60685404|gb|AAX34590.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685409|gb|AAX34594.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685414|gb|AAX34598.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685419|gb|AAX34602.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685424|gb|AAX34606.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685429|gb|AAX34610.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685434|gb|AAX34614.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685439|gb|AAX34618.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685444|gb|AAX34622.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685449|gb|AAX34626.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685454|gb|AAX34630.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685459|gb|AAX34634.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685464|gb|AAX34638.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685469|gb|AAX34642.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685474|gb|AAX34646.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685479|gb|AAX34650.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685484|gb|AAX34654.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685489|gb|AAX34658.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685494|gb|AAX34662.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685499|gb|AAX34666.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685504|gb|AAX34670.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685509|gb|AAX34674.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685514|gb|AAX34678.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685519|gb|AAX34682.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685524|gb|AAX34686.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685529|gb|AAX34690.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685534|gb|AAX34694.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685539|gb|AAX34698.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685544|gb|AAX34702.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685549|gb|AAX34706.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685554|gb|AAX34710.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685559|gb|AAX34714.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685564|gb|AAX34718.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685569|gb|AAX34722.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685574|gb|AAX34726.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685579|gb|AAX34730.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685584|gb|AAX34734.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685589|gb|AAX34738.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685594|gb|AAX34742.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685599|gb|AAX34746.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685604|gb|AAX34750.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685609|gb|AAX34754.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685614|gb|AAX34758.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685619|gb|AAX34762.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685624|gb|AAX34766.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685629|gb|AAX34770.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685634|gb|AAX34774.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685639|gb|AAX34778.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685644|gb|AAX34782.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685649|gb|AAX34786.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685654|gb|AAX34790.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685659|gb|AAX34794.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685664|gb|AAX34798.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685669|gb|AAX34802.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685674|gb|AAX34806.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685679|gb|AAX34810.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685684|gb|AAX34814.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685689|gb|AAX34818.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685694|gb|AAX34822.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685699|gb|AAX34826.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685704|gb|AAX34830.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685709|gb|AAX34834.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685714|gb|AAX34838.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685719|gb|AAX34842.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685724|gb|AAX34846.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685729|gb|AAX34850.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685734|gb|AAX34854.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685739|gb|AAX34858.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685744|gb|AAX34862.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685749|gb|AAX34866.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685754|gb|AAX34870.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685759|gb|AAX34874.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685764|gb|AAX34878.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685769|gb|AAX34882.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685774|gb|AAX34886.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685779|gb|AAX34890.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685784|gb|AAX34894.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685789|gb|AAX34898.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685794|gb|AAX34902.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685799|gb|AAX34906.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685804|gb|AAX34910.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685809|gb|AAX34914.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685814|gb|AAX34918.1| NADH dehydrogenase subunit 6 [Elephas maximus]
 gi|60685819|gb|AAX34922.1| NADH dehydrogenase subunit 6 [Elephas maximus]
          Length = 183

 Score = 38.1 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           VM  + F + S + ++      +  +P+Y   SL+ +     G+ +  G  F+ ++  +V
Sbjct: 8   VMMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMSSGGSFLGLVVFLV 66

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           Y+G ++V  +F         E  E       + S F+  L  E+ +    F
Sbjct: 67  YLGGMMV--VFGYTTAMATEEYPETWGSNVVVLSAFLVGLLMEVFMIVWLF 115


>gi|49146725|ref|YP_025961.1| NADH dehydrogenase subunit 6 [Strigops habroptilus]
 gi|37960707|gb|AAP47805.1| NADH dehydrogenase subunit 6 [Strigops habroptilus]
          Length = 171

 Score = 38.1 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 39/72 (54%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++++  V +  +P Y V  L+F  +   G  + LGA FV+++  +VY+G
Sbjct: 2  AYFVLFLGIGFVLAALAVASNPSPYYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|5835565|ref|NP_008417.1|ND6_13947 NADH dehydrogenase subunit 6 [Ovis aries]
 gi|6093588|sp|O78757|NU6M_SHEEP RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|3366633|gb|AAD10106.1| NADH dehydrogenase subunit 6 [Ovis aries]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFLMV 104


>gi|322422702|ref|YP_004222414.1| NADH dehydrogenase subunit 6 [Mauremys megalocephala]
 gi|296040860|gb|ADG85403.1| NADH dehydrogenase subunit 6 [Mauremys megalocephala]
          Length = 174

 Score = 38.1 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 55/108 (50%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SLIF  +   G+ + +G  FV+++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALFGCGVLVGMGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +V F +   ++     V+    +  F G +++ I+ A +++ +  + +
Sbjct: 64  LVIFAYSSALMAEPFPVSWMSLEGVFYGLYYLFIVLAFVMMDSDLWSI 111


>gi|86264057|gb|ABC87766.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|86264059|gb|ABC87767.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|158187247|gb|ABW22865.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|158187275|gb|ABW22891.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|158187289|gb|ABW22904.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|158187303|gb|ABW22917.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|158187317|gb|ABW22930.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|298110633|gb|ADI57604.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|298110647|gb|ADI57617.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|298110661|gb|ADI57630.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|298110675|gb|ADI57643.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|298110773|gb|ADI57734.1| NADH dehydrogenase subunit 6 [Ovis aries musimon]
 gi|298110787|gb|ADI57747.1| NADH dehydrogenase subunit 6 [Ovis aries musimon]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFLMV 104


>gi|121582447|ref|YP_980176.1| NADH dehydrogenase subunit 6 [Takydromus tachydromoides]
 gi|121309345|dbj|BAF43964.1| NADH dehydrogenase subunit 6 [Takydromus tachydromoides]
          Length = 171

 Score = 38.1 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
            F    +++   V +  +P +   SL+ A     GL +LLG+ FV+++ L++Y+G ++V 
Sbjct: 7   FFMVGLVLAFVSVASNPSPYFGAGSLVVAASFGCGLLVLLGSSFVSLVLLLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           F + + +       +      G+ G++ + +    L +  + F+ F   G  S
Sbjct: 67  FAYSVALASDPYPESWGNVW-GYFGAYVVMVFFLVLSLGDAGFVGFGVMGADS 118


>gi|223972329|dbj|BAH23365.1| NADH dehydrogenase subunit 6 [Hippopotamus amphibius]
          Length = 176

 Score = 38.1 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+M  + F + S + +I      +  +PIY    LI +     G+ L  G  F+ ++  +
Sbjct: 1   MMMTYVVF-ILSIVFVIGFIGFSSKPSPIYGGLGLIVSGGAGCGMVLNFGGSFLGLMVFL 59

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           VY+G ++V F +   M             +  LG+F +G++   L V 
Sbjct: 60  VYLGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFLLGLMMEFLAVL 106


>gi|37496459|emb|CAD21997.1| NADH dehydrogenase subunit 6 [Elephas maximus]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F + S + ++      +  +P+Y   SL+ +     G+ +  G  F+ ++  +VY
Sbjct: 1   MMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMSSGGSFLGLVVFLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V  +F         E  E       + S F+  L  E+ +    F
Sbjct: 60  LGGMMV--VFGYTTAMATEEYPETWGSNVVVLSAFLVGLLMEVFMIVWLF 107


>gi|18643242|gb|AAL76252.1| NADH dehydrogenase subunit 6 [Gracula religiosa religiosa]
          Length = 83

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       I+    V +  +P Y V  L+ A V   G  + LG  FVA++ ++VY
Sbjct: 2  MEFVMF--LGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|6137813|ref|NP_009290.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|62287136|sp|Q9TA18|NU6M_LOXAF RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|5852115|emb|CAA12149.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|83415416|gb|ABC17915.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747801|gb|ABG89412.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747805|gb|ABG89415.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747825|gb|ABG89430.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747829|gb|ABG89433.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747841|gb|ABG89442.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747853|gb|ABG89451.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747857|gb|ABG89454.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747865|gb|ABG89460.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747869|gb|ABG89463.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747893|gb|ABG89481.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747905|gb|ABG89490.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747921|gb|ABG89502.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747925|gb|ABG89505.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747929|gb|ABG89508.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747933|gb|ABG89511.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747937|gb|ABG89514.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747941|gb|ABG89517.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747949|gb|ABG89523.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747953|gb|ABG89526.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747977|gb|ABG89544.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747981|gb|ABG89547.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747997|gb|ABG89559.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748017|gb|ABG89574.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748033|gb|ABG89586.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748041|gb|ABG89592.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748057|gb|ABG89604.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748061|gb|ABG89607.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748069|gb|ABG89613.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748089|gb|ABG89628.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748113|gb|ABG89646.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748117|gb|ABG89649.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748121|gb|ABG89652.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748137|gb|ABG89664.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748141|gb|ABG89667.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748149|gb|ABG89673.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748161|gb|ABG89682.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748169|gb|ABG89688.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748177|gb|ABG89694.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748189|gb|ABG89703.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748197|gb|ABG89709.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748205|gb|ABG89715.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748209|gb|ABG89718.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++      +  +P+Y   SL+ +     G+ +  G  F+ ++  +VY+G ++V
Sbjct: 6   FIMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMGSGGSFLGLVVFLVYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            F + I M   +            LG+F +G+L    ++   
Sbjct: 66  VFGYTIAMATEEYPETWGSNV-VVLGAFLVGLLMEVFMIMWL 106


>gi|207560020|gb|ACI24612.1| NADH dehydrogenase subunit 6 [Rupicapra pyrenaica]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKVVLGAFVTGLLMEFLMV 104


>gi|11545720|ref|NP_071464.1| NADH dehydrogenase subunit 6 [Sardinops melanostictus]
 gi|11526570|dbj|BAB18613.1| NADH dehydrogenase subunit 6 [Sardinops melanostictus]
          Length = 172

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y++    +I    ++T  +P ++   L+        + +  G+ F+A++  ++Y+G ++V
Sbjct: 5   YIWLAGFVIGVIGIMTNPSPYFAALGLVMCSAATCCILVFGGSTFLAVVLFLIYLGGMLV 64

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            F F   +        E   +        + +L   L+V  S
Sbjct: 65  VFAFTAALAA--DPFPEGTLEAAPYEFLILVVLGISLLVAQS 104


>gi|280978488|ref|YP_003345410.1| NADH dehydrogenase subunit 6 [Ariosoma shiroanago]
 gi|271280633|dbj|BAI53418.1| NADH dehydrogenase subunit 6 [Ariosoma shiroanago]
          Length = 171

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
            + ++ +  V +  +P Y+   L+ A     G+ +  G  F++++  +VY+G ++V F +
Sbjct: 10  VILVLGAVGVASNPSPYYAALGLVMAAAGGCGILIGCGGFFISLVLFLVYLGGMLVVFGY 69

Query: 73  IIMML--DIDIEVAEPRKKRGFLGSFFIGILAAEL 105
              ++  D   E  E       +G   I +L   L
Sbjct: 70  TAALVSDDYPEEFMEWSVAYRLVGCLLITVLLDSL 104


>gi|86264062|gb|ABC87768.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|158187261|gb|ABW22878.1| NADH dehydrogenase subunit 6 [Ovis aries]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFLMV 104


>gi|207559852|gb|ACI24456.1| NADH dehydrogenase subunit 6 [Capra ibex]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGAGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFITGLLMEFLMV 104


>gi|147743076|ref|YP_001218741.1| NADH dehydrogenase subunit 6 [Parajulis poecilepterus]
 gi|144925941|gb|ABP03893.1| NADH dehydrogenase subunit 6 [Parajulis poecilepterus]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   MFLIGLVVGLVAVASNPSPYFAALGLVVVSGMGCGILVSSGGPFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           F +   +       AEP  +  F G   + ++   +IV   +   +    E+S +   
Sbjct: 67  FAYSAAL------AAEPYPEGWFSGPVVMYMVVYLVIVTLMSVPFWGEWFEVSWVPVD 118


>gi|108793377|ref|YP_637100.1| NADH dehydrogenase subunit 6 [Gavia pacifica]
 gi|108755482|dbj|BAE95717.1| NADH dehydrogenase subunit 6 [Gavia pacifica]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F    S    +    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVVFLSVCFALGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|157736045|ref|YP_001491498.1| NADH dehydrogenase subunit 6 [Centropyge loricula]
 gi|157679356|dbj|BAF80413.1| NADH dehydrogenase subunit 6 [Centropyge loricula]
          Length = 172

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 39/103 (37%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LFS   +     V +  +P ++   L+       GL   LG  F++MI  ++Y+G ++V 
Sbjct: 7   LFSVGLVSGLVAVASNPSPYFAALGLVVVSGFGCGLLAALGGSFLSMILFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +           +        + G+     I+    +
Sbjct: 67  FAYSAALAAEPFPETWGHETVVAYIYMYFGVSYCLSILFGLVW 109


>gi|131839186|ref|YP_001096039.1| NADH dehydrogenase subunit 6 [Procyon lotor]
 gi|130381983|dbj|BAF49014.1| NADH dehydrogenase subunit 6 [Procyon lotor]
 gi|152962717|dbj|BAF73955.1| NADH dehydrogenase subunit 6 [Procyon lotor]
 gi|155368595|emb|CAM98609.1| NADH dehydrogenase subunit 6 [Procyon lotor]
          Length = 177

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +       +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVFCFVGFCSKPSPIYGGLVLIVSGGIGCGIVLSYGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L SF +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WASNKAVLASFIVGVLSELLTAC 105


>gi|14010664|ref|NP_114236.1| NADH dehydrogenase subunit 6 [Conger myriaster]
 gi|13928155|dbj|BAB47004.1| NADH dehydrogenase subunits 6 [Conger myriaster]
          Length = 171

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           LF  LF  +    +  V    +P YS+F L+ + +    +    G  FV++I  ++Y+G 
Sbjct: 3   LFIVLFLVLMTFGAVCVSCNPSPFYSIFGLVLSTLAGCMMLASYGGTFVSLILFLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           ++V F+F + +        E  +    L  F + +L + +    S
Sbjct: 63  MLVAFVFCVAVAS--EAYLEGLESASVLVRFVLCLLISFIFCMIS 105


>gi|1171830|sp|P43190|NU6M_AETPU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|394656|emb|CAA52131.1| NADH dehydrogenase subunit 6 [Aethia pusilla]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGLCFVLGGLAVASKPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVA 84
           ++V F++ + +       A
Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81


>gi|14602237|ref|NP_148749.1| NADH dehydrogenase subunit 6 [Tarsius bancanus]
 gi|14582827|gb|AAK69669.1|AF348159_12 NADH dehydrogenase subunit 6 [Tarsius bancanus]
          Length = 170

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L S + ++      +  +PIY    LI +     G+ L LG  F+ ++  ++Y
Sbjct: 1   MTYVVF-LLSVIFLMGFIGFSSKPSPIYGGLGLIVSGGIGCGMVLSLGGVFIGLMVFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   M   +   A       + G   +G+     +V    +        L 
Sbjct: 60  LGGMLVVFGYTTAMAMEEYPEAWGSSVSVW-GVLLLGMFMEVFVVAWMMYYDNVGLKSLE 118

Query: 123 RLVFKGNN 130
             V  G+N
Sbjct: 119 DWVIFGDN 126


>gi|197311183|ref|YP_002154463.1| NADH dehydrogenase subunit 6 [Ptychochromoides katria]
 gi|197304609|dbj|BAG69535.1| NADH dehydrogenase subunit 6 [Ptychochromoides katria]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             ++F F  ++    V +  +P ++   L+       G+ +  G  F+++I  ++Y+G +
Sbjct: 4   LMFMFLFGLVLGLVAVASNPSPYFAALGLVAVAGMGCGVLVGHGGSFLSLILFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   +       AEP  +     S    +L   + VC    M +    E S    
Sbjct: 64  LVVFAYSAAL------AAEPYPEGWGSWSVLGMVLVYVVGVCMVGGMFWGGWYEASWTSA 117

Query: 127 K 127
            
Sbjct: 118 D 118


>gi|256427221|ref|YP_003126990.1| NADH dehydrogenase subunit 6 [Rhynchopelates oxyrhynchus]
 gi|256353373|dbj|BAH97881.1| NADH dehydrogenase subunit 6 [Rhynchopelates oxyrhynchus]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L  YL  F  I++   V +  +P ++   L+    +  G+ +  G  F++++  ++Y+G
Sbjct: 2   TLLMYLSVFSWILALIAVASNPSPYFAALGLVVVAGSGCGVLIAHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V  +F            E       L    + IL+            + +    +  
Sbjct: 62  GMLV--VFAYSAALAAEPYPETWGSEPVLVYAVVYILSVAGAAALVGGGWYESSWVPADE 119

Query: 125 VFKGN 129
           + + +
Sbjct: 120 LSEFS 124


>gi|294656013|ref|XP_458245.2| DEHA2C13090p [Debaryomyces hansenii CBS767]
 gi|199430790|emb|CAG86321.2| DEHA2C13090p [Debaryomyces hansenii]
          Length = 950

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGA------EFVAMITLVVYV 63
           L S         ++T +N   ++   I     + GL ++             ++ LV Y+
Sbjct: 17  LLSITTSSLGIAILTSQNMAIALLLFIIGGFISGGLLVIQMLFRSNLTPIFFILQLVAYI 76

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVF--SAEGE 120
             ++   +F I ++    + ++  K     + + FI  +    I     F+VF  S   E
Sbjct: 77  FQIVTGIVFCINIIHNHFDFSKGFKGWEVAVPTLFIIDVFLMAISITLLFVVFLQSGPDE 136

Query: 121 LSRLVFKGNNV 131
           +  +  + + V
Sbjct: 137 IEDVDLEKDTV 147


>gi|165932421|ref|YP_001650838.1| NADH dehydrogenase subunit 6 [Hippocampus kuda]
 gi|154758832|dbj|BAF74975.1| NADH dehydrogenase subunit 6 [Hippocampus kuda]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 1/115 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F L   + I     V +  +P ++   L+       G+ +  G  F++++  ++Y
Sbjct: 1   MTYLMFLLLMGL-IFGLIAVASNPSPYFAALGLVVVAGMGCGVMVSFGGPFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +       +         G  +       L      +   S 
Sbjct: 60  LGGMLVVFAYSAALAAEPYPESWGSWSVAIYGVLYFMGGVLVLSYLYGGWNESSW 114


>gi|298110801|gb|ADI57760.1| NADH dehydrogenase subunit 6 [Ovis vignei]
 gi|298110815|gb|ADI57773.1| NADH dehydrogenase subunit 6 [Ovis vignei]
 gi|298110843|gb|ADI57799.1| NADH dehydrogenase subunit 6 [Ovis vignei]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFVTGLLMEFLMV 104


>gi|224588034|ref|YP_002640563.1| NADH dehydrogenase subunit 6 [Rallina eurizonoides sepiaria]
 gi|224471579|dbj|BAH24073.1| NADH dehydrogenase subunit 6 [Rallina eurizonoides sepiaria]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 43/103 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      ++    V +  +P Y V  L+ + V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFMFFLGVCFVLGGLAVASNPSPYYGVVGLVLSSVVGCGWLLSLGLSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V FL+ + +            +        + +L   + V
Sbjct: 62  GMLVVFLYSVSLAADPYPEGWGDWRVVGYTVGLVLVLIVGMFV 104


>gi|195996941|ref|XP_002108339.1| hypothetical protein TRIADDRAFT_52711 [Trichoplax adhaerens]
 gi|190589115|gb|EDV29137.1| hypothetical protein TRIADDRAFT_52711 [Trichoplax adhaerens]
          Length = 1296

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 24/148 (16%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT-------LVV 61
           ++ S + + S  ++        S+     +  + AG++ LL    +  +        + +
Sbjct: 121 FIASILLMSSFLMLALATRDSPSLLFPALSLCSTAGMYFLLSLFQIGNLFKTKRSTVISI 180

Query: 62  YVG---AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
             G   A    FLF  ++ D+           G   S    I  A   +   N +VF   
Sbjct: 181 INGSFDASAAIFLFFQLIYDV-----------GISRSTLFLIWTALSFITVINTIVFIPA 229

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPL 146
             +     + N++ + G +    Y Y  
Sbjct: 230 KPILPPDAEYNSITS-GIL--GNYYYIF 254


>gi|153127850|ref|YP_001382344.1| NADH dehydrogenase subunit 6 [Ailurus fulgens styani]
 gi|152962731|dbj|BAF73968.1| NADH dehydrogenase subunit 6 [Ailurus fulgens styani]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +IS     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMVYIVFILSVIFVISFVGFSSKPSPIYGGLVLIVSGAVGCGIILSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFILGLLSELLTAC 105


>gi|14141960|ref|NP_115401.1|ND6_15669 NADH dehydrogenase subunit 6 [Tinamus major]
 gi|14039506|gb|AAK53254.1|AF338707_13 NADH dehydrogenase subunit VI [Tinamus major]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++ +  V +  +P Y V  L+   V   G  L LG  FV+++  +VY+G ++V 
Sbjct: 7  FLGVCFVLGALAVASNPSPQYGVMGLVMGSVVGCGWLLSLGVSFVSLVLFLVYLGGMLVV 66

Query: 70 FLFIIMM 76
          F++ + +
Sbjct: 67 FVYCVSL 73


>gi|289183160|ref|YP_003457147.1| NADH dehydrogenase subunit 6 [Ophiocomina nigra]
 gi|288995517|emb|CBH40121.1| NADH dehydrogenase subunit 6 [Ophiocomina nigra]
          Length = 152

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 75/155 (48%), Gaps = 11/155 (7%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            ++ S ++    +P +SVF ++   ++ + +F L G  F +++ +++Y G ++V FLF  
Sbjct: 1   MVVGSLILFFSLSPYFSVFGILVQALSLSIIFCLFGFPFFSLLLILIYAGGMLVVFLFST 60

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN- 133
           ++       AE   +         G+ +  +IV     +V+S E  ++ L F G N E  
Sbjct: 61  LLT------AERHPESIVQEIVLFGLGSMIVIVP----LVYSWETPVNSLSFVGLNQEML 110

Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168
           +G +     A    +  F+LL++++G + +   H 
Sbjct: 111 LGNLFSVPLAIVTCVVAFVLLIALMGVLSINFEHT 145


>gi|237642066|ref|YP_002894728.1| NADH dehydrogenase subunit 6 [Moschus berezovskii]
 gi|153799701|gb|ABS50581.1| NADH dehydrogenase subunit 6 [Moschus berezovskii]
          Length = 175

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMVYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   ++V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKAVLGAFITGLLMEFVMV 104


>gi|222836590|ref|YP_002586853.1| NADH dehydrogenase subunit 6 [Cetomimus sp. AMS I34481001]
 gi|222051542|dbj|BAH15231.1| NADH dehydrogenase subunit 6 [Cetomimus sp. AMS I34481001]
          Length = 173

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 1/107 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +          ++    V +  +P ++   L+       GL +  G  F++++  ++Y+G
Sbjct: 2   TYLMSFLLVGLVVGLIGVASNPSPFFAALGLVVVAGFGCGLLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCAS 110
            ++V F +   +       +       G    +F+G++ A   +C  
Sbjct: 62  GMLVVFAYSAALAAEPFPESWGSWSVFGQAFIYFMGVVLAFWYLCGG 108


>gi|215979761|ref|YP_002333256.1| NADH dehydrogenase subunit 6 [Torquigener brevipennis]
 gi|215422711|dbj|BAG85546.1| NADH dehydrogenase subunit 6 [Torquigener brevipennis]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 7  FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G  F++++ L++Y+
Sbjct: 1  MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFIY 69


>gi|13898639|gb|AAK48840.1| NADH dehydrogenase subunit 6 [Amazona farinosa]
          Length = 172

 Score = 37.7 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 44/99 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++++ LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G
Sbjct: 2   TYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103
            ++V F++ + +                    F+ I++ 
Sbjct: 62  GMLVVFVYSVSLAADPFPQVWGGWHTMGCVLGFVFIVST 100


>gi|119360593|ref|YP_913378.1| NADH dehydrogenase subunit 6 [Tribolodon nakamurai]
 gi|119225063|dbj|BAF41439.1| NADH dehydrogenase subunit 6 [Tribolodon nakamurai]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 48/109 (44%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +LF  + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G
Sbjct: 2   TYFVFLFLLILIVGLIAVASNPTPYFAALGLVVAAGVGCGVLVSCGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +       A   R   G++  + +G++    +     +
Sbjct: 62  GMLVVFAYSAALAAEPFPEAWGSRSVAGYVLVYLVGVILTAGLFWGGWY 110


>gi|56713977|gb|AAW23984.1| NADH dehydrogenase subunit 6 [Ovis aries]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSXIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFLMV 104


>gi|38707476|ref|NP_944774.1|ND6_17487 NADH dehydrogenase subunit 6 [Phocoena phocoena]
 gi|38602597|emb|CAD88051.1| NADH6 protein [Phocoena phocoena]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +IS   V +  +P+Y    LI       G+    G  F+ ++  ++Y
Sbjct: 1   MTMYIVFIMSVIFVISLVGVSSKPSPVYGGLGLIVGGAVGCGIVFSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M  I+         +  LG F +G++   L+V 
Sbjct: 61  LGGMLVVFGYTAAM-AIEQYPEVWVSNKVVLGGFLLGLITEFLVVL 105


>gi|15079201|ref|NP_149942.1| NADH dehydrogenase subunit 6 [Trichosurus vulpecula]
 gi|13752513|gb|AAK38700.1|AF357238_12 NADH dehydrogenase subunit 6 [Trichosurus vulpecula]
          Length = 167

 Score = 37.7 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +PIY   SL+ +    + + + L   F+ ++  +VY
Sbjct: 1   MEMMVVFLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLENTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M   +   +       F    F   +       +    V +A
Sbjct: 61  LGGMLVVFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEVEVDTA 115


>gi|313676724|ref|YP_004054720.1| NADH/ubiquinone/plastoquinone (complex i) [Marivirga tractuosa DSM
           4126]
 gi|312943422|gb|ADR22612.1| NADH/Ubiquinone/plastoquinone (complex I) [Marivirga tractuosa DSM
           4126]
          Length = 762

 Score = 37.7 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 43/101 (42%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   + +I+    +  R+ I ++ SL    +  + +FL  GA  +A+  +++    + VF
Sbjct: 597 ILGLIVLIALGFTLFTRSNISALLSLSVVGIAISIIFLEAGAPDLAITFILIDALTITVF 656

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            L +  +    +      + R  + +   G+L   ++   +
Sbjct: 657 VLILHKLPKKMLRKRNSARVRDAIIALGTGLLITLILFSIT 697


>gi|299829101|ref|YP_003735116.1| NADH dehydrogenase subunit 6 [Hydrolagus lemures]
 gi|298110913|gb|ADI57864.1| NADH dehydrogenase subunit 6 [Hydrolagus lemures]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRN-PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++F +   M  I   + V     P ++ F L+ +     GL    G  F++++  ++Y+G
Sbjct: 2   IYFVILMLMCFIMGLVAVASNPAPYFAAFGLVVSAAVGCGLLASHGVSFLSLVLFLIYLG 61

Query: 65  AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
            ++V F++   +  D   E          +  + +G+  A L  C    M
Sbjct: 62  GMLVVFVYSAALTADPHPESWWDWSVMANVSVYVLGVSVAALYFCGGWNM 111


>gi|238866860|ref|YP_002929320.1| NADH dehydrogenase subunit 6 [Otolemur crassicaudatus]
 gi|238809381|dbj|BAH69206.1| NADH dehydrogenase subunit 6 [Otolemur crassicaudatus]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL S + ++      +  +PIY    LI +     G+ + LG  F+ ++  +VY+G ++V
Sbjct: 6   YLLSVLFVLGFVGFSSKPSPIYGGLGLIISGGVGCGIVMSLGGSFMGLMVFLVYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   M   +   +       +       +L   LI+    +
Sbjct: 66  VFGYTTAMATEEYPESWGSSVVIWGALLLGAVLEVILILFVGEY 109


>gi|94490706|ref|YP_588082.1|ND6_19394 NADH dehydrogenase subunit 6 [Cnemotriccus fuscatus]
 gi|48727630|gb|AAT46118.1| NADH dehydrogenase subunit 6 [Cnemotriccus fuscatus]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 42/106 (39%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F    S   I+    V +  +P Y V  L+   V   G  + LG  F++++  +VY+G
Sbjct: 2   TYFMIFLSICFILGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVSFISLVLFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +        I +L   +     
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVVGYSVALIMVLVGGMAAVGL 107


>gi|298110689|gb|ADI57656.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|298110703|gb|ADI57669.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|298110745|gb|ADI57708.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|298110759|gb|ADI57721.1| NADH dehydrogenase subunit 6 [Ovis aries]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFVTGLLMEFLMV 104


>gi|28603666|ref|NP_789759.1| NADH dehydrogenase subunit 6 [Coturnix chinensis]
 gi|28556861|dbj|BAC57512.1| NADH dehydrogenase subunit 6 [Coturnix chinensis]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++ +  V +  +P Y V  L+ A V   G  + LG  F++++  ++Y+G
Sbjct: 2  TYFVIFLGVCFMLGTLAVASNPSPYYGVVGLVLASVVGCGWLVNLGVSFISLVLFMIYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR 86


>gi|298110717|gb|ADI57682.1| NADH dehydrogenase subunit 6 [Ovis aries]
 gi|298110731|gb|ADI57695.1| NADH dehydrogenase subunit 6 [Ovis aries]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFVTGLLMEFLMV 104


>gi|226453512|ref|YP_002791157.1| NADH dehydrogenase subunit 6 [Chamaeleo calyptratus]
 gi|124055090|gb|ABM89706.1| NADH dehydrogenase subunit 6 [Chamaeleo calyptratus]
          Length = 169

 Score = 37.7 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P +   SL  A V  AG+   L + F++++ ++VY+G ++V F++ + M   
Sbjct: 14  VGVASNPSPYFGGVSLALASVFGAGVMAGLSSTFISLVLMLVYLGGMLVVFVYSVAMSSD 73

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
               A   +        F+G L          +
Sbjct: 74  MYPEAWGNRSVFLYVVGFLGYLFCLWWYTGGEW 106


>gi|215979551|ref|YP_002333061.1| NADH dehydrogenase subunit 6 [Takifugu poecilonotus]
 gi|215422739|dbj|BAG85572.1| NADH dehydrogenase subunit 6 [Takifugu poecilonotus]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 7   FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G  F++++ L++Y+
Sbjct: 1   MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60

Query: 64  GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           G ++V F++   +       A    +          F  GIL   +++    +   S + 
Sbjct: 61  GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEKVWWGVSGKM 120

Query: 120 ELSRL 124
           + + +
Sbjct: 121 DWNAV 125


>gi|190349452|ref|YP_001974525.1| NADH dehydrogenase subunit 6 [Sphoeroides pachygaster]
 gi|89885716|dbj|BAE86993.1| NADH dehydrogenase subunit 6 [Sphoeroides pachygaster]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 37/98 (37%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P +   SL+       G     G  F++++  ++Y+G ++V F + + +   
Sbjct: 17  VAVASNPSPYFGALSLVVVAGFGCGTLFWHGGSFLSLVLFLIYLGGMLVVFAYSVALAAE 76

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
                        L   + GI+A   I+    +   S 
Sbjct: 77  PYPETLGSGPVVMLMLMYFGIVALVYILFIGGWEGQSW 114


>gi|62900841|gb|AAY18748.1| NADH dehydrogenase subunit 6 [Podarcis muralis]
          Length = 157

 Score = 37.7 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
           S   V +  +P +   +L+       G+ +LLG+ FV+++ L++Y+G ++V F + +  L
Sbjct: 1   SLIGVASNPSPYFGAGNLVVGASLGCGILILLGSSFVSLVLLLIYLGGMLVVFAYSV-AL 59

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
             D       K  G+ G + + +L   ++     F+     G
Sbjct: 60  ASDPFPETWGKVGGYFGGYVVLVLFLIMMFSEGVFVSLGVSG 101


>gi|126792902|gb|ABO27307.1| NADH dehydrogenase subunit 6 [Nandayus nenday]
          Length = 170

 Score = 37.7 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G +
Sbjct: 4  FLVFLGISFVLASLLVASNPSPYYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|325126943|ref|YP_004286178.1| NADH dehydrogenase subunit 6 [Geotrygon violacea]
 gi|304365571|gb|ADM26376.1| NADH dehydrogenase subunit 6 [Geotrygon violacea]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P Y V  L+ A V   G  L LG  FVA++  +VY+G ++V F++ + +       
Sbjct: 21  SNPSPYYGVVGLVAASVTGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVSLAADPFPE 80

Query: 84  AEPRKKRGFLGSFFIGILAAELIV 107
           A    +    G  F+ +LA  ++V
Sbjct: 81  AWGDWRVVGYGLGFVLVLAIGVVV 104


>gi|68989240|ref|YP_254711.1| NADH dehydrogenase subunit 6 [Cervus nippon yakushimae]
 gi|67625647|dbj|BAD99598.1| NADH dehydrogenase subunit6 [Cervus nippon yakushimae]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVTMV 104


>gi|68989159|ref|YP_254648.1| NADH dehydrogenase subunit 6 [Pterodroma brevirostris]
 gi|37724212|gb|AAO20295.1| NADH dehydrogenase subunit 6 [Pterodroma brevirostris]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+   V   G  L LG  FV+++  +VY+G
Sbjct: 2  AYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVMGSVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|317097184|ref|YP_004123322.1| NADH dehydrogenase subunit 6 [Rattus villosissimus]
 gi|290573424|gb|ADD46542.1| NADH dehydrogenase subunit 6 [Rattus villosissimus]
          Length = 172

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ SF+ ++    +    +PIY  F LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSFLFLVGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+  FF+  L  EL++
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLLMELVM 102


>gi|207560034|gb|ACI24625.1| NADH dehydrogenase subunit 6 [Rupicapra rupicapra]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +I      +   PIY    LI +     G+ L  G  F+ ++  + Y
Sbjct: 1   MMTYIVFILSIIFVIGFVGFSSKPXPIYGGLGLIVSGGVGCGIXLNFGGSFLGLMVFLXY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFITGLLMEFLMV 104


>gi|18077908|ref|NP_542254.1| NADH dehydrogenase subunit 6 [Vombatus ursinus]
 gi|17932911|emb|CAC83116.1| NADH dehydrogenase subunit 6 [Vombatus ursinus]
          Length = 167

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 46/115 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +L S + I+      +  +P+Y   SL+ +      + + L   F+ ++  +VY
Sbjct: 1   MKMMVIFLLSLLLIVGFVAFASKPSPVYGGLSLVASGGLGCAIVVSLENTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M   +   +       F    F  ++       +    + +A
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNAVAFGMLLFTLLVELIWYFVSGEVEIVTA 115


>gi|296099708|gb|ADG95307.1| NADH dehydrogenase subunit 6 [Polypterus retropinnis]
          Length = 167

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 49/111 (44%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS + +IS   V +  +P ++ F L+       G+ +  G  F++M+  ++Y+G 
Sbjct: 2   VLMVVFSVIFLISLVAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMVLFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
           ++V F +   +       A    +       ++ ++A   ++   +F  F 
Sbjct: 62  MLVVFAYSAALAAEPYPHAWGSWEVFSYVLGYMFLIAVAWVMFVGDFGSFG 112


>gi|219524187|ref|YP_002456332.1| NADH dehydrogenase subunit 6 [Sacalia quadriocellata]
 gi|117649858|gb|ABK53946.1| NADH dehydrogenase subunit 6 [Sacalia quadriocellata]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 47/97 (48%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  F++++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFISLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103
           +V F +   ++     V     +  F G ++  IL  
Sbjct: 64  LVIFAYSSALMAEPFPVGWVSLEGVFYGLYYFFILMV 100


>gi|58578662|ref|YP_203288.1| NADH dehydrogenase subunit 6 [Herpestes javanicus]
 gi|57014066|gb|AAW32555.1| NADH dehydrogenase subunit 6 [Herpestes javanicus]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+M  +F  + S + ++S     +  +PIY  FSLI A     G+ L  G  F+ ++  +
Sbjct: 1   MMMYIVF--ILSTIFVVSFVSFSSKPSPIYGGFSLIVAGGVGCGIVLSFGGSFLGLMVFL 58

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +Y+G ++V F +    +  +         +  LG+   G+LA  L+ C
Sbjct: 59  IYLGGMLVVFGYT-TAMAAEPYPETWSSNKAVLGALITGVLAELLMAC 105


>gi|197311140|ref|YP_002154502.1| NADH dehydrogenase subunit 6 [Xenopoecilus sarasinorum]
 gi|197304244|dbj|BAG69205.1| NADH dehydrogenase subunit 6 [Xenopoecilus sarasinorum]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 9/154 (5%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YLF    ++    V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLFLIGLVLGLAAVASNPSPYFAALGLVLVAGMGCGVLVGHGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSR 123
            F +   +                L  F++ I+              +++V     E S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSLLMLFYLFIVGLVGSYLCEGWFEGSWVVVDEFHEFSL 125

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSM 157
               G  +     ++Y+   + L ++G++LLLS+
Sbjct: 126 FRGDGGGIA----LIYSSGGFVLILAGWVLLLSL 155


>gi|32526840|ref|NP_871772.1| NADH dehydrogenase subunit 6 [Urotrichus talpoides]
 gi|62510793|sp|Q7Y8D2|NU6M_UROTA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|32469191|dbj|BAC78885.1| NADH dehydrogenase subunit 6 [Urotrichus talpoides]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIAFILSTILVVSFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNYGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V  +F         E  E       + S F+    AEL+   
Sbjct: 61  LGGMLV--VFGYTTAMAMEEYPEVWVSNKTVLSLFVLGFMAELLFAG 105


>gi|288903391|ref|YP_003434114.1| NADH dehydrogenase subunit 6 [Epinephelus septemfasciatus]
 gi|219562633|gb|ACL27781.1| NADH dehydrogenase subunit 6 [Epinephelus septemfasciatus]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 6  LFFYLFSFMA--IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
          + F +  F+   I+ +  V +  +P +    L+       G+ +  G+ F+A+I  ++Y+
Sbjct: 1  MCFVIICFLICWIVGAIAVASNPSPFFGALGLVMVAGVGCGVLVEYGSPFLALILFLIYL 60

Query: 64 GAVIVFFLF 72
          G ++V F +
Sbjct: 61 GGMLVVFAY 69


>gi|16357316|ref|NP_443565.1| NADH dehydrogenase subunit 6 [Danacetichthys galathenus]
 gi|16267117|dbj|BAB70259.1| NADH dehydrogenase subunit 6 [Danacetichthys galathenus]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 8   FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67
           F LF F  ++    V +  +P Y+   L+        L +  G  F++++  ++Y+G ++
Sbjct: 7   FLLFGF--VVGLIAVASNPSPFYAALGLVVVAGLGCALLVGHGGPFLSLVLFLIYLGGML 64

Query: 68  VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           V F +   +       AEP  +     S     L   L V  + F  +    E S +   
Sbjct: 65  VVFAYSAAL------AAEPFPESWGNWSVLGQALVYFLGVALAFFHFYGGWSEASWVPVD 118


>gi|226464022|ref|YP_002734975.1| NADH dehydrogenase subunit 6 [Chamaeleo calcaricarens]
 gi|124055132|gb|ABM89745.1| NADH dehydrogenase subunit 6 [Chamaeleo calcaricarens]
          Length = 169

 Score = 37.7 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
            V +  +P +   SL  A V  AG+   L + FV+++ ++VY+G ++V F++ + M    
Sbjct: 15  GVASNPSPYFGGVSLALASVLGAGVMAGLSSTFVSLVLMLVYLGGMLVVFVYSVAMSSDM 74

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG--KVL 138
              A   +        F+G L          +  F   GE+  +V   + V ++G   +L
Sbjct: 75  YPEAWGNRSVFLYVVGFLGYLFCLWWYMGGKW--FFDGGEVGSVVLLNDAVVDLGGVVLL 132

Query: 139 YT 140
           Y+
Sbjct: 133 YS 134


>gi|109676684|gb|ABG37771.1| NADH dehydrogenase subunit 6 [Pelecanus conspicillatus]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 40/80 (50%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++ S  V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+G
Sbjct: 2  TYFVLLLGVCFVLGSLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVA 84
           ++V F++ + +      VA
Sbjct: 62 GMLVVFVYSVSLAADPFPVA 81


>gi|114052896|ref|YP_740291.1| NADH dehydrogenase subunit 6 [Lacerta viridis viridis]
 gi|113926828|emb|CAJ45057.1| NADH dehydrogenase subunit 6 [Lacerta viridis viridis]
          Length = 171

 Score = 37.7 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 43/97 (44%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
            F    +IS   +    +P +   SL+ A     G+ +LLG  FV+++ L++Y+G ++V 
Sbjct: 7   FFMVCFVISLIGIACNPSPYFGAGSLVVAAGLGCGILILLGGSFVSLVLLLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           F + + +                +G  F+ +    ++
Sbjct: 67  FAYSVALASDPFPETLGNLGGYLIGYTFLVVFLVVML 103


>gi|316926517|ref|YP_004111307.1| NADH dehydrogenase subunit 6 [Capra hircus]
 gi|283049415|gb|ADB07181.1| NADH dehydrogenase subunit 6 [Capra hircus]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGAGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFVTGLLMEFLMV 104


>gi|157736171|ref|YP_001491420.1| NADH dehydrogenase subunit 6 [Diodon holocanthus]
 gi|139000792|dbj|BAF51944.1| NADH dehydrogenase subunit 6 [Diodon holocanthus]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 42/105 (40%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F  ++    V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V F +
Sbjct: 10  FGLVLGLVAVASNPSPYFAALGLVLVAGLGCGVLVSHGGSFLSLILFLIYLGGMLVVFAY 69

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
              +       +   +   F G  ++G +     V    +   S 
Sbjct: 70  SAALAAEPFPESLGSRSVAFSGVVYMGAVFMISSVFWGGWYESSW 114


>gi|240266352|ref|YP_002970605.1| NADH dehydrogenase subunit 6 [Thermophis zhaoermii]
 gi|238800141|gb|ACR55932.1| NADH dehydrogenase subunit 6 [Thermophis zhaoermii]
          Length = 171

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 46/120 (38%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+M +  F +     + S   +     P   V +L+          ++LG  F A++  +
Sbjct: 1   MIMMNYLFGVIMVFVVFSVVALGITSVPYRGVVALMGVSFFCCVFMVVLGRTFAALVMYI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VY+G +IV F + + +      + +    +  + S F+ I     ++      + +    
Sbjct: 61  VYLGGLIVVFGYCVSVEKDGGGLFKTDGFKYLIISMFVVIGFLSWVLVGEVGGLLTYTSW 120


>gi|156142542|gb|ABU52036.1| NADH dehydrogenase subunit 6 [Coereba flaveola]
          Length = 155

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 44/95 (46%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V F++ + +     
Sbjct: 2   VASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVSLAAEPY 61

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
             A         G     ++A  L++  +   + S
Sbjct: 62  PEAWGNFGVVGYGFGMGLVVAVGLVMSGTTGALVS 96


>gi|115532038|ref|YP_783968.1| NADH dehydrogenase subunit 6 [Lagostrophus fasciatus]
 gi|115345135|emb|CAK22241.1| NADH dehydrogenase subunit 6 [Lagostrophus fasciatus]
          Length = 167

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +P+Y   SL+ +      + + L   F+ +I  +VY
Sbjct: 1   MKMMVIFLFSVLLIFGFVAFASKPSPVYGGLSLVASGGLGCAIVVSLEDVFLGLIVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +G ++V F +   M   +   +            F  ++ +   + +    V
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNTVALSMLLFTLLIESVWYLLSGQVKV 112


>gi|215979733|ref|YP_002333230.1| NADH dehydrogenase subunit 6 [Takifugu oblongus]
 gi|215422683|dbj|BAG85520.1| NADH dehydrogenase subunit 6 [Takifugu oblongus]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 7   FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G  F++++ L++Y+
Sbjct: 1   MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60

Query: 64  GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           G ++V F++   +       A    +          F  GIL   +++    +   S E 
Sbjct: 61  GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEEIWWGVSGEM 120

Query: 120 ELSRL 124
           +   +
Sbjct: 121 DWDAV 125


>gi|327492973|ref|YP_004347925.1| NADH dehydrogenase subunit 6 [Torquigener pleurogramma]
 gi|327392474|dbj|BAK09910.1| NADH dehydrogenase subunit 6 [Torquigener pleurogramma]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 7  FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G  F++++ L++Y+
Sbjct: 1  MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALFCCGASVLHGGTFLSLVLLMIYM 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFIY 69


>gi|161561821|ref|YP_001586160.1| NADH dehydrogenase subunit 6 [Porphyrio hochstetteri]
 gi|143024786|gb|ABO93108.1| NADH dehydrogenase subunit 6 [Porphyrio hochstetteri]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 41/101 (40%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F        ++    V +  +P Y V  L+   V   G  L LG  FV+++  +VY+G +
Sbjct: 4   FMLFLGVCFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLLSLGLSFVSLVLFMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +V FL+ + +            +     +  + +L   L V
Sbjct: 64  LVVFLYSVSLAADPYPEGWGDWRVVGYIAGLVLVLIVGLFV 104


>gi|327555507|gb|AEB01120.1| NADH dehydrogenase subunit 6 [Crocodylus rhombifer]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F+L   + ++S  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G 
Sbjct: 3   ITFFLLCCLMMVSVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104
           ++V F F +   D              L       L   
Sbjct: 63  LLVVFAFCVGFTDDKYCEFWGAGGSKVLACVCGAGLGVG 101


>gi|221145503|ref|YP_002519714.1| NADH dehydrogenase subunit 6 [Brachaluteres ulvarum]
 gi|219806639|dbj|BAH10341.1| NADH dehydrogenase subunit 6 [Brachaluteres ulvarum]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 43/110 (39%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P ++   L+       G+    G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLVMGLLAVASNPSPYFAALGLVTVSGLGCGVLFGHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           F +   +       +   +       +++G++     +    +  FS   
Sbjct: 67  FAYCSALAAEPHPESWGSEPVMLTVVWYVGMVFLVSSLFWGGWYEFSWTA 116


>gi|238866874|ref|YP_002929346.1| NADH dehydrogenase subunit 6 [Perodicticus potto]
 gi|238809409|dbj|BAH69232.1| NADH dehydrogenase subunit 6 [Perodicticus potto]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 43/108 (39%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +  S + ++      +  +PIY    L+ +     G+ +  G  F+ ++  +VY+G ++V
Sbjct: 6   FTLSVLFVLGFIGFSSKPSPIYGGLGLVMSGGVGCGIVMSFGGSFMGLVVFLVYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
            F +   M   +   +       +       ++   L++    + V S
Sbjct: 66  VFGYTTAMATEEYPESWGSSVVMWGALLLGVLVEMMLVLLGGGYYVGS 113


>gi|226462727|ref|YP_002727908.1| NADH dehydrogenase subunit 6 [Chamaeleo africanus]
 gi|124055146|gb|ABM89758.1| NADH dehydrogenase subunit 6 [Chamaeleo africanus]
 gi|124055160|gb|ABM89771.1| NADH dehydrogenase subunit 6 [Chamaeleo africanus]
          Length = 169

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P +   SL  A V  AG+ + L + FV+++ ++VY+G ++V F++ + M   
Sbjct: 14  VGVASNPSPYFGGVSLALASVFGAGVMVGLSSTFVSLVLMLVYLGGMLVVFIYSVAMSSD 73

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
               A   +        F+G L          +
Sbjct: 74  MYPEAWGNRSVFLYVIGFLGYLFCLWWYIGEKW 106


>gi|212725651|ref|YP_002317392.1| NADH dehydrogenase subunit 6 [Spinachia spinachia]
 gi|212374535|dbj|BAG83103.1| NADH dehydrogenase subunit 6 [Spinachia spinachia]
          Length = 173

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    +    ++ +  +P +    L+       G+ +  GA F++++  ++Y+G ++V 
Sbjct: 7   IFMLGLVFGLIVIASNPSPYFGALGLVVVSGMGCGVLVGHGAPFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFM 113
           F +   +           +   F  G +  G+L A        F+
Sbjct: 67  FAYSAALAAEPYPEMLGSRSVAFNAGGYLFGVLIAGSFFWGGWFI 111


>gi|19032399|gb|AAL83417.1| NADH dehydrogenase subunit 6 [Trichosurus caninus]
 gi|19032402|gb|AAL83419.1| NADH dehydrogenase subunit 6 [Trichosurus caninus]
          Length = 167

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +PIY   SL+ +    + + + LG  F+ ++  +VY
Sbjct: 1   MKMMVVFLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLGNTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M   +   +       F    F   +       +    V +A
Sbjct: 61  LGGMLVVFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEVEVDTA 115


>gi|308178332|ref|YP_003917738.1| Na(+)/H(+) antiporter subunit A/B [Arthrobacter arilaitensis Re117]
 gi|307745795|emb|CBT76767.1| Na(+)/H(+) antiporter subunit A/B [Arthrobacter arilaitensis Re117]
          Length = 989

 Score = 37.7 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L   + I  + + +T      +V  +         +F L GA  +A+  L+V     IV 
Sbjct: 611 LIGAVIIAGAVVAITAPKRFMAVLMVSVTGYGMVAIFALQGAPDLALTQLLV---ETIVL 667

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
             F++ +  +   +     +  +  +     LA  ++  A   M    E  +S
Sbjct: 668 VSFVLALRALPKRLWVGLTRIKWGRAILAIALAVMVVYIAIAMMAARTEARIS 720


>gi|29570639|ref|NP_818798.1| NADH dehydrogenase subunit 6 [Apteronotus albifrons]
 gi|29501148|dbj|BAC67505.1| NADH dehydrogenase subunit 6 [Apteronotus albifrons]
          Length = 173

 Score = 37.7 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +LF    ++    V +   P +S   L+ A     G+ +  G  F++++  ++Y+G ++V
Sbjct: 6   FLFLMGLVMGLVGVASNPAPYFSALGLVVAAGGGCGVLVWHGGSFLSLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F +   +       AEP  +     S    +L   + V    +  +    E S +V   
Sbjct: 66  VFAYSAAL------AAEPYPESWGDRSVVGYVLLYVVGVVLVGWWFYGGWYEGSWVVGDS 119


>gi|310007461|gb|ADP00772.1| NADH dehydrogenase subunit 6 [Morone mississippiensis]
          Length = 172

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 4/157 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+     F+L  F  ++S   V    +P Y  F L+        + +  G  F+A+I ++
Sbjct: 1   MMTYVACFFLAGF--VLSMVAVACNPSPFYGSFGLVAVAGFGCAVVIGFGGVFMALILVM 58

Query: 61  VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE- 118
           +YVGA++V F++   +  D   E        G  G +F+G++AA   +      +     
Sbjct: 59  IYVGAMLVVFVYSAALAADRYPESWGSGSVAGQAGGYFLGLMAAFSFIWKEECGILGGPL 118

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155
           G +     +  ++  +  +  +  A  +  +G +LL 
Sbjct: 119 GSVEEWASQRGDISGVSWMYSSGGALLVISAGALLLT 155


>gi|147744502|ref|YP_001218802.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|145208220|gb|ABP38009.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|145208235|gb|ABP38023.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|145208249|gb|ABP38036.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532469|gb|ACU81398.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532483|gb|ACU81411.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532497|gb|ACU81424.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532511|gb|ACU81437.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532525|gb|ACU81450.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532539|gb|ACU81463.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532553|gb|ACU81476.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532567|gb|ACU81489.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532581|gb|ACU81502.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532595|gb|ACU81515.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532609|gb|ACU81528.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532623|gb|ACU81541.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532637|gb|ACU81554.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532651|gb|ACU81567.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532665|gb|ACU81580.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532679|gb|ACU81593.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532693|gb|ACU81606.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532707|gb|ACU81619.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532721|gb|ACU81632.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532735|gb|ACU81645.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532749|gb|ACU81658.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532763|gb|ACU81671.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532777|gb|ACU81684.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532791|gb|ACU81697.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532805|gb|ACU81710.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532819|gb|ACU81723.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532833|gb|ACU81736.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532847|gb|ACU81749.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532861|gb|ACU81762.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532875|gb|ACU81775.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532889|gb|ACU81788.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532903|gb|ACU81801.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532917|gb|ACU81814.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532931|gb|ACU81827.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532945|gb|ACU81840.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532959|gb|ACU81853.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532973|gb|ACU81866.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256532987|gb|ACU81879.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533001|gb|ACU81892.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533015|gb|ACU81905.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533029|gb|ACU81918.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533043|gb|ACU81931.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533057|gb|ACU81944.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533071|gb|ACU81957.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533085|gb|ACU81970.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533099|gb|ACU81983.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533113|gb|ACU81996.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533127|gb|ACU82009.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533141|gb|ACU82022.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533155|gb|ACU82035.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533169|gb|ACU82048.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533183|gb|ACU82061.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533197|gb|ACU82074.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533211|gb|ACU82087.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533225|gb|ACU82100.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533239|gb|ACU82113.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533253|gb|ACU82126.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533267|gb|ACU82139.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533281|gb|ACU82152.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533295|gb|ACU82165.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533309|gb|ACU82178.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533323|gb|ACU82191.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533337|gb|ACU82204.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533351|gb|ACU82217.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533365|gb|ACU82230.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533379|gb|ACU82243.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533393|gb|ACU82256.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533407|gb|ACU82269.1| NADH dehydrogenase subunit 6 [Bos grunniens]
 gi|256533421|gb|ACU82282.1| NADH dehydrogenase subunit 6 [Bos grunniens]
          Length = 175

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFITGLLMEFFMV 104


>gi|25057511|ref|NP_739683.1| NADH dehydrogenase subunit 6 [Diplacanthopoma brachysoma]
 gi|25005563|dbj|BAC23227.1| NADH dehydrogenase subunit 6 [Diplacanthopoma brachysoma]
          Length = 173

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF    ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TYIMSLFLMGLVLGLVGVASNPSPYFAALGLVVVAGMGCGVLVGFGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNF 112
            ++V F +   +       +   +   F +G + +G+L          +
Sbjct: 62  GMLVVFAYSAALAAEPYPESWGSRPVMFYVGVYLLGVLLVSGPFWGGWY 110


>gi|37910033|gb|AAR04864.1| NADH dehydrogenase subunit 6 [Paratomella rubra]
          Length = 110

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 46/102 (45%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F   + SF+V+   +P  SV  ++   V  +  + +     +  + +VVY+G +++ F F
Sbjct: 5   FCCCLFSFMVIFSLSPYGSVLGIMLLSVMLSVQYFMSSNYLLGFLWVVVYIGGIVIVFAF 64

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
               L I+  V      +  +  FF+ ++ +  I+   NF  
Sbjct: 65  SCSFLMINFVVKLLGSFKKMMFLFFLSMVLSCFILYFINFFW 106


>gi|299758243|dbj|BAJ09909.1| NADH dehydrogenase subunit 6 [Stolephorus chinensis]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 9   YLFS---FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           YLFS   F+ I+    V +   P Y+   L+        +    GA F+A++  ++Y+G 
Sbjct: 3   YLFSSWLFLLILGLVAVASNPAPYYAALGLVLVAGAGCAILAGCGASFLAIVLFLIYLGG 62

Query: 66  VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           ++V F +   +  +   E         ++  +   +  A   V +  F  +
Sbjct: 63  MLVVFAYSAALAAEPHPEAWWDVSVLEYVAFYLTCVAVAGGYVYSGWFGHY 113


>gi|157736059|ref|YP_001491524.1| NADH dehydrogenase subunit 6 [Zebrasoma flavescens]
 gi|157679384|dbj|BAF80439.1| NADH dehydrogenase subunit 6 [Zebrasoma flavescens]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 43/113 (38%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF    I+    V +  +P ++   L+       G+    G  F++++  ++Y+G
Sbjct: 2   TFSMSLFLCGLILGLVAVASNPSPYFAALGLVTVAGLGCGVLAGHGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F++ + +       +   +        ++  +     +C   +   S 
Sbjct: 62  GMLVVFVYSVALAAEPFPESWGSQPVAMSAMVYVLWVMLAAGLCWGGWYGPSW 114


>gi|299758257|dbj|BAJ09919.1| NADH dehydrogenase subunit 6 [Stolephorus waitei]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 9   YLFS---FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           YLFS   F+ I+    V +   P Y+   L+        +    GA F+A++  ++Y+G 
Sbjct: 3   YLFSSWLFLLILGLVAVASNPAPYYAALGLVLVAGAGCAILAGCGASFLAIVLFLIYLGG 62

Query: 66  VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           ++V F +   +  +   E         ++  +   +  A   V +  F  +
Sbjct: 63  MLVVFAYSAALAAEPHPEAWWDVSVLEYVAFYLTCVAVAGGYVYSGWFGHY 113


>gi|222839266|ref|YP_002586999.1| NADH dehydrogenase subunit 6 [Cuora flavomarginata]
 gi|188503898|gb|ACD56043.1| NADH dehydrogenase subunit 6 [Cuora flavomarginata]
          Length = 174

 Score = 37.3 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVGMGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   ++     V     +  F G ++   L   ++       ++S EG  +  V 
Sbjct: 64  LVIFAYSSALMAEPFPVGWVSLEGVFYGLYY---LFIAVVFVQMGCHLWSIEGIGADTVD 120

Query: 127 KGN 129
            G 
Sbjct: 121 AGG 123


>gi|108793278|ref|YP_637047.1| NADH dehydrogenase subunit 6 [Petaurus breviceps]
 gi|94481199|dbj|BAE94004.1| NADH dehydrogenase subunit 6 [Petaurus breviceps]
          Length = 164

 Score = 37.3 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 50/115 (43%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + II      +  +PIY   SL+ +     G+ +     F+ ++  +VY
Sbjct: 1   MKMMIIFLFSILLIIGFVAFASKPSPIYGGLSLVMSGGLGCGMVVSFEDIFLGLVVFMVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M   +   +       F    F  ++     + + +  V++A
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNMVAFSMLLFAMLIEMFWFMISGDVEVYTA 115


>gi|325965048|ref|YP_004242954.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit
           Na+/H+ antiporter, Mnhsubunit alpha [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323471135|gb|ADX74820.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit
           Na+/H+ antiporter, MnhA subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 1022

 Score = 37.3 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +     +I +   V       +V  +       A +F L GA  +A+  ++V     I+ 
Sbjct: 618 VVGAGIVIGALAAVKANKRFLAVLMVSVTGYGIALMFALQGAPDLALTQMLV---ETIIL 674

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             F++ M  +  E+ +    +  +    IG+     +V A+ +
Sbjct: 675 VAFVLAMRSLPAELRDRTGGKYRVVRVIIGLCFGITMVVAAIY 717


>gi|49616786|ref|YP_044763.1| NADH dehydrogenase subunit 6 [Rena humilis]
 gi|49256942|dbj|BAD24748.1| NADH dehydrogenase subunit 6 [Rena humilis]
          Length = 169

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 1/108 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   ++   +       +     P   V  L+F FV  + +  ++G  FVA++  +VYVG
Sbjct: 2   TYLMFIVCLLVFYGFLGLCLCVYPEDGVVWLVFCFVLGSFMLGVIGVSFVALMLFIVYVG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F + +  +  ++ V   R  R  +   F  +            
Sbjct: 62  GMMVVFAYSV-AVTSEVGVKVGRWVRKVVSFCFGVVAFCFGFYVVGGL 108


>gi|327492529|ref|YP_004347429.1| NADH dehydrogenase subunit 6 [Torquigener hypselogeneion]
 gi|327392488|dbj|BAK09923.1| NADH dehydrogenase subunit 6 [Torquigener hypselogeneion]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 4/125 (3%)

Query: 7   FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G  F++++ L++Y+
Sbjct: 1   MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           G ++V F++    L  D +   P   +  L  F        ++   +        G    
Sbjct: 61  GGMLVVFIYS-SALSADKDPEAPTGWQVILFFFGYFFFVFGILYTNTVLDEELWWGVSGE 119

Query: 124 LVFKG 128
           L +  
Sbjct: 120 LDWDA 124


>gi|126792890|gb|ABO27300.1| NADH dehydrogenase subunit 6 [Primolius auricollis]
          Length = 170

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G
Sbjct: 2  TYFLVFLGVGFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|223976104|ref|YP_002600801.1| NADH dehydrogenase subunit 6 [Capricornis crispus]
 gi|207559950|gb|ACI24547.1| NADH dehydrogenase subunit 6 [Capricornis crispus]
 gi|207559964|gb|ACI24560.1| NADH dehydrogenase subunit 6 [Capricornis sumatraensis]
 gi|223972385|dbj|BAH23417.1| NADH dehydrogenase subunit 6 [Capricornis crispus]
          Length = 175

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFITGLLMEFFMV 104


>gi|260786443|ref|XP_002588267.1| hypothetical protein BRAFLDRAFT_86715 [Branchiostoma floridae]
 gi|229273427|gb|EEN44278.1| hypothetical protein BRAFLDRAFT_86715 [Branchiostoma floridae]
          Length = 963

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 17/115 (14%)

Query: 7   FFYLFSFMA---IISSFLVVTVRNP----------IYSVFSLIFAFVNAAGLFLLLGAEF 53
            F++ + +A   I++  + +T   P          +  + S++ + V    +  + GA  
Sbjct: 729 LFHIATTVAPCVILAVLMTITFVMPIDKGDRISFGVTILLSMVVSLVFVTDVLPVKGALP 788

Query: 54  VAMITLVVYVGAVIVFFLFI---IMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
                +VVY+ A++  FLF    I+ L        P  K  FL      +L  +L
Sbjct: 789 FFASLIVVYM-AMMGLFLFFTIYIITLHDKEGGLSPMAKTFFLRYMAGFLLLGDL 842


>gi|284177739|ref|YP_003406740.1| NADH dehydrogenase subunit 6 [Moschus moschiferus]
 gi|213990241|gb|ACJ60543.1| NADH dehydrogenase subunit 6 [Moschus moschiferus]
          Length = 175

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMVYIVFILSVVFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   ++V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFITGLLMEFVMV 104


>gi|226453434|ref|YP_002791027.1| NADH dehydrogenase subunit 6 [Rattus rattus]
 gi|160688830|gb|ABX45244.1| NADH dehydrogenase subunit 6 [Rattus rattus]
 gi|209361446|gb|ACI43359.1| NADH dehydrogenase subunit 6 [Rattus rattus]
          Length = 172

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY  F LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
             +F         E  E      F+  FF+  L  EL++
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELVM 102


>gi|298200334|ref|YP_003667919.1| NADH dehydrogenase subunit 6 [Acanthosaura armata]
 gi|296840995|dbj|BAJ08241.1| NADH dehydrogenase subunit 6 [Acanthosaura armata]
          Length = 174

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 38/68 (55%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          +L S     S   VV+  +P ++V +L+ +   + G+   LG  F+A++  +VY+G ++V
Sbjct: 5  FLLSVGFFASVVGVVSNPSPCFAVGALVLSVGLSCGVLAELGMYFLALVVFLVYLGGMLV 64

Query: 69 FFLFIIMM 76
           F + + M
Sbjct: 65 VFAYTVAM 72


>gi|226968597|ref|YP_002808548.1| NADH dehydrogenase subunit 6 [Chiloscyllium plagiosum]
 gi|226247229|gb|ACO40344.1| NADH dehydrogenase subunit 6 [Chiloscyllium plagiosum]
          Length = 174

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++F     + +I   + V    +P Y+   L+ A     GL +  G  F++++  ++Y+G
Sbjct: 2   IYFMSVMMIGLILGLMAVASNPSPYYAALGLVMAAGMGCGLMVGYGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
            ++V F++   +         P     +    ++GI    +I     F V
Sbjct: 62  GMLVVFVYTAAL----AAEPYPEAWGDWSVLLYVGIYLMSVIFVGKYFAV 107


>gi|256427302|ref|YP_003127065.1| Nad6p [Dekkera bruxellensis]
 gi|255761599|gb|ACU32835.1| Nad6p [Dekkera bruxellensis]
          Length = 170

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 1/111 (0%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94
           LI   +          ++  A++  V+YVGAV++ F+FI+ +L+   E          + 
Sbjct: 30  LIGTIIPVITELWFNYSQLFAILYTVIYVGAVVILFIFILSVLNKKEEYEYQYSSLFIIL 89

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRL-VFKGNNVENIGKVLYTQYAY 144
                           N    +     + L +   +++  IG +L+T+Y++
Sbjct: 90  LLLFLDDLDYNDSNDINLNSINIFDNFNILDIINNSDLSTIGNLLFTEYSF 140


>gi|215979705|ref|YP_002333204.1| NADH dehydrogenase subunit 6 [Takifugu xanthopterus]
 gi|215422655|dbj|BAG85494.1| NADH dehydrogenase subunit 6 [Takifugu xanthopterus]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 7   FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G  F++++ L++Y+
Sbjct: 1   MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60

Query: 64  GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           G ++V F++   +       A    +          F  GIL   +++    +   S E 
Sbjct: 61  GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEEVWWGVSGEV 120

Query: 120 ELSRL 124
           +   +
Sbjct: 121 DWDAV 125


>gi|197311225|ref|YP_002154515.1| NADH dehydrogenase subunit 6 [Hyporhamphus sajori]
 gi|197304258|dbj|BAG69218.1| NADH dehydrogenase subunit 6 [Hyporhamphus sajori]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   Y F F  I+    V +  +P ++   L+       G+ +  G  F+++I  ++Y+G
Sbjct: 2   TYIIYFFFFGLILGLAAVASNPSPYFAALGLVVVAGMGCGVLVSCGGSFLSLILFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +               G    + +G+ A  ++     +
Sbjct: 62  GMLVVFAYSAALAAEPYPEGWGSWPVLGVTVVYMLGVFAVAVLFWGGWY 110


>gi|159036368|ref|YP_001535621.1| hypothetical protein Sare_0711 [Salinispora arenicola CNS-205]
 gi|157915203|gb|ABV96630.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
          Length = 187

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 76/181 (41%), Gaps = 5/181 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F+  + +A+++   V  V +   + +SL  +F+      +LL   +V ++ +++ V  
Sbjct: 5   VVFWALAVVAVLAGAAVFVVDSMARASYSLAVSFIVVGLQVMLLQQRYVGVLIILMMVME 64

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           + +  +++ M + ++  +       G   +  + +    L+   + F    A     R  
Sbjct: 65  MAIMAVYMNMFMGMNPALMSMNMVHGTRHALPVSVGVFVLLAAGALF----APWPSRRGS 120

Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL-MLRHRRDIKRQDISKQLESNP 184
              +    +G  L       +   G ++ ++++G +VL   R R D    D+ ++  ++P
Sbjct: 121 PPDDVTAALGTELMGPKMLTMAAVGVVMAVTIVGGVVLAAHRTRYDRFGDDLRRRPAADP 180

Query: 185 D 185
            
Sbjct: 181 Q 181


>gi|12249176|ref|NP_066227.2|ND6_15504 NADH dehydrogenase subunit 6 [Fasciola hepatica]
 gi|12248352|gb|AAG13155.2| NADH dehydrogenase subunit 6 [Fasciola hepatica]
          Length = 150

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGL-FLLLGAEFVAMITLVVYVGAVIV 68
           + + +          V +PI     LI A ++ +GL +L++G  +  ++  +VYVG V V
Sbjct: 5   ILAKVYFSCLLGFSFVSHPIVYCLLLIGAALSISGLGYLVVGFSWYLVVFCLVYVGGVYV 64

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F+F+         +  P     F G    G++     +C  +F+ FS         +  
Sbjct: 65  LFIFV--------SIHTPNPLPNFSGIGIDGLVLFFGFLCVFSFVFFSVPSLCDSSFYLC 116

Query: 129 NNVENIGKVLY 139
           ++ E +   L+
Sbjct: 117 SSFEGLSYCLF 127


>gi|5835371|ref|NP_007405.1|ND6_12156 NADH dehydrogenase subunit 6 [Macropus robustus]
 gi|2829773|sp|P92670|NU6M_MACRO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1850873|emb|CAA71547.1| NADH dehydrogenase subunit 6 [Macropus robustus]
          Length = 167

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 44/108 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + +       +  +P+Y   SL+ +      + + L   F+ +I  ++Y
Sbjct: 1   MKMMVVFLFSILLVFGFVAFASKPSPVYGGLSLVVSGGLGCAIVVSLEDVFLGLIVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F +   M   +   +            F  I+ +   + + 
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNTVALSMLLFTVIVESAWYLMSG 108


>gi|327199766|gb|AEA36030.1| NADH dehydrogenase subunit 6 [Calyptorhynchus baudinii]
 gi|327199780|gb|AEA36043.1| NADH dehydrogenase subunit 6 [Calyptorhynchus latirostris]
          Length = 172

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 44/103 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        I+++  V +  +P Y V  L+   +   G  + LG  FV+++  +VY+G
Sbjct: 2   AYFVLFLGVSFILAALAVASNPSPYYGVIGLVLGSIVGCGWLMSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A   ++          ++    +V
Sbjct: 62  GMLVVFVYSVSLAADPFPQAWGDRRVLVYIVGLALVIVLGSVV 104


>gi|215979747|ref|YP_002333243.1| NADH dehydrogenase subunit 6 [Takifugu ocellatus]
 gi|215422697|dbj|BAG85533.1| NADH dehydrogenase subunit 6 [Takifugu ocellatus]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 7   FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G  F++++ L++Y+
Sbjct: 1   MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60

Query: 64  GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           G ++V F++   +       A    +          F  GIL   +++    +   S E 
Sbjct: 61  GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEEVWWGVSGEM 120

Query: 120 ELSRL 124
           +   +
Sbjct: 121 DWDAV 125


>gi|226463879|ref|YP_002791131.1| NADH dehydrogenase subunit 6 [Anguis fragilis]
 gi|167030971|gb|ABZ05731.1| NADH dehydrogenase subunit 6 [Anguis fragilis]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F  F    I++   V +  +P Y    L+ + V   G+ + +G  F++++  ++Y
Sbjct: 1   MSYLVFVFF-MCLILTLVWVASNPSPYYGAAGLVSSAVVGCGILVGMGYSFISLVLFLIY 59

Query: 63  VGAVIVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           +G ++V F++ + +  +   E    R    FLG FF  +L    I+   + +  ++E   
Sbjct: 60  LGGMLVVFVYTVSLAAEPHPEALGSRAGVYFLGYFFAFVLLGGGIIGGWDVVGLNSEVRT 119

Query: 122 S 122
           S
Sbjct: 120 S 120


>gi|23397378|ref|NP_694926.1| NADH dehydrogenase subunit 6 [Takifugu rubripes]
 gi|215979565|ref|YP_002333074.1| NADH dehydrogenase subunit 6 [Takifugu exascurus]
 gi|215979593|ref|YP_002333100.1| NADH dehydrogenase subunit 6 [Takifugu chrysops]
 gi|215979607|ref|YP_002333113.1| NADH dehydrogenase subunit 6 [Takifugu niphobles]
 gi|215979621|ref|YP_002333126.1| NADH dehydrogenase subunit 6 [Takifugu obscurus]
 gi|215979663|ref|YP_002333165.1| NADH dehydrogenase subunit 6 [Takifugu stictonotus]
 gi|215979677|ref|YP_002333178.1| NADH dehydrogenase subunit 6 [Takifugu snyderi]
 gi|215979691|ref|YP_002333191.1| NADH dehydrogenase subunit 6 [Takifugu vermicularis]
 gi|215979719|ref|YP_002333217.1| NADH dehydrogenase subunit 6 [Takifugu chinensis]
 gi|255764530|ref|YP_003097553.1| NADH dehydrogenase subunit 6 [Takifugu fasciatus]
 gi|23306928|emb|CAD13219.1| NADH dehydrogenase subunit 6 [Takifugu rubripes]
 gi|86604630|dbj|BAE79215.1| NADH dehydrogenase subunit 6 [Takifugu rubripes]
 gi|215422543|dbj|BAG85390.1| NADH dehydrogenase subunit 6 [Takifugu chrysops]
 gi|215422557|dbj|BAG85403.1| NADH dehydrogenase subunit 6 [Takifugu niphobles]
 gi|215422571|dbj|BAG85416.1| NADH dehydrogenase subunit 6 [Takifugu obscurus]
 gi|215422613|dbj|BAG85455.1| NADH dehydrogenase subunit 6 [Takifugu stictonotus]
 gi|215422627|dbj|BAG85468.1| NADH dehydrogenase subunit 6 [Takifugu snyderi]
 gi|215422641|dbj|BAG85481.1| NADH dehydrogenase subunit 6 [Takifugu vermicularis]
 gi|215422669|dbj|BAG85507.1| NADH dehydrogenase subunit 6 [Takifugu chinensis]
 gi|215422753|dbj|BAG85585.1| NADH dehydrogenase subunit 6 [Takifugu exascurus]
 gi|255361315|gb|ACU09513.1| NADH dehydrogenase subunit 6 [Takifugu fasciatus]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 7   FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G  F++++ L++Y+
Sbjct: 1   MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60

Query: 64  GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           G ++V F++   +       A    +          F  GIL   +++    +   S E 
Sbjct: 61  GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEEVWWGVSGEM 120

Query: 120 ELSRL 124
           +   +
Sbjct: 121 DWDAV 125


>gi|38707582|ref|NP_944761.1| NADH dehydrogenase subunit 6 [Monodon monoceros]
 gi|38602583|emb|CAD88038.1| NADH6 protein [Monodon monoceros]
          Length = 175

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +IS   V +  +PIY    LI +     G+    G  F+ ++  ++Y
Sbjct: 1   MMMYIVFIMSVIFVISIVGVSSKPSPIYGGLGLIVSGAMGCGIVFSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +   M       A     +  LG F  G++   L+V    +
Sbjct: 61  LGGMLVVFGYTAAMATEQYPEA-WISNKVVLGGFLSGLVVEFLMVLYVLW 109


>gi|270153142|gb|ACZ61154.1| NADH dehydrogenase subunit 6 [Capra hircus]
 gi|270153156|gb|ACZ61167.1| NADH dehydrogenase subunit 6 [Capra hircus]
          Length = 175

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFITGLLMEFLMV 104


>gi|207559796|gb|ACI24404.1| NADH dehydrogenase subunit 6 [Ammotragus lervia]
          Length = 175

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFITGLLMEFLMV 104


>gi|294494370|gb|ADE93054.1| NADH dehydrogenase subunit 6 [Seriola fasciata]
 gi|294494373|gb|ADE93056.1| NADH dehydrogenase subunit 6 [Seriola fasciata]
 gi|294494376|gb|ADE93058.1| NADH dehydrogenase subunit 6 [Seriola fasciata]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +  +   E    R    ++  + +G++    +     +
Sbjct: 62  GMLVVFAYSAALAAEPYPETWGSRPVVTYMAVYLVGVMLVAALFWGGWY 110


>gi|13898636|gb|AAK48838.1| NADH dehydrogenase subunit 6 [Amazona ochrocephala oratrix]
          Length = 172

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 42/99 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++++ LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G
Sbjct: 2   TYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103
            ++V F++ + +                    F  ++  
Sbjct: 62  GMLVVFVYSVSLAADPFPQVWGGWHTMGCVLGFAFVVGT 100


>gi|256985320|ref|YP_003162757.1| NADH dehydrogenase subunit 6 [Microcanthus strigatus]
 gi|256542247|dbj|BAH98088.1| NADH dehydrogenase subunit 6 [Microcanthus strigatus]
          Length = 169

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 45/109 (41%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +LF F  I+    V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V
Sbjct: 2   FLFLFGFILGLVAVASNPSPYFAALGLVVVAGMGCGVLMGHGGPFLSLVLFLIYLGGMLV 61

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +       +   +        +I I+     +  S +  FS 
Sbjct: 62  VFAYSAALAAEPYPESWGSRSVVVYMVIYIVIVIMVSGLFWSGWHEFSW 110


>gi|225679288|gb|EEH17572.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 1022

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 34/93 (36%)

Query: 46   FLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
             L+L  E +  + +  ++ A    F+F   +        +            +GIL   +
Sbjct: 920  LLMLYLEMLGFVYMYYFIVASAAMFIFAAFVFLTQRHTGKIYSWVAITTRVLLGILLLGM 979

Query: 106  IVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138
            +   +NF +  +      ++F    V  +G++ 
Sbjct: 980  VAIVTNFRLVYSFMTNPMIIFTFTLVLLVGELF 1012


>gi|207559978|gb|ACI24573.1| NADH dehydrogenase subunit 6 [Oreamnos americanus]
          Length = 175

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +    + I+         +  LG+F  G+L   L+V 
Sbjct: 61  LGGMMVVFGYT-TAMAIEQYPEVWVSNKVVLGAFVTGLLMEFLMVW 105


>gi|13928158|dbj|BAB47099.1| NADH dehydrogenase subunit 6 [Megalops cyprinoides]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +LF    ++    V +   P ++   L+       G+    G  F+++I  ++Y+G ++V
Sbjct: 6   FLFLVGLVLGFVAVASNPAPYFAALGLVVVAAIGCGMLASHGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
             +F+           E       LG   + + +  L+    +F  +     ++  +   
Sbjct: 66  --VFVYSAALAAEPYPESWGDWSVLGYVVVYLFSVGLVGGWLSFGWYGYSWVVADELEGF 123

Query: 129 N 129
           +
Sbjct: 124 S 124


>gi|256427298|ref|YP_003127062.1| NADH dehydrogenase subunit 6 [Threskiornis aethiopicus]
 gi|255709637|gb|ACU30726.1| NADH dehydrogenase subunit 6 [Threskiornis aethiopicus]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVVFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVAL 73


>gi|226453408|ref|YP_002726149.1| NADH dehydrogenase subunit 6 [Fundulus diaphanus]
 gi|215511462|gb|ACJ67912.1| NADH dehydrogenase subunit 6 [Fundulus diaphanus]
 gi|215511476|gb|ACJ67925.1| NADH dehydrogenase subunit 6 [Fundulus diaphanus]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 44/109 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y   F  ++    V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YFLLFSLVLGLAAVASNPSPYFAALGLVVVAGIGCGVLIWHGGGFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L   ++  + +  ++  +N+ + S 
Sbjct: 66  VFAYSAALAAEPYPEGWGSWPVLGLVLGYLLGVGSVGMLVGNNWYMESW 114


>gi|327492959|ref|YP_004347912.1| NADH dehydrogenase subunit 6 [Monotrete cochinchinensis]
 gi|327392460|dbj|BAK09897.1| NADH dehydrogenase subunit 6 [Monotrete cochinchinensis]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 42/108 (38%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGILVWHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           F +   +                    ++GI+    ++    +  +S 
Sbjct: 67  FAYSAALAAEPYPETLGSWPVLVSMLMYVGIVVLVFVLFLGGWEGYSW 114


>gi|255506350|ref|YP_003097147.1| NADH dehydrogenase subunit 6 [Tscherskia triton]
 gi|152031542|gb|ABS28788.1| NADH dehydrogenase subunit 6 [Tscherskia triton]
          Length = 174

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F L SF+A+          +PIY    LI +        L  G  F+ ++  ++Y
Sbjct: 1   MTELIFILSSFIALGC-LGTSLKPSPIYGGMCLIISGCAGCLAVLGFGGSFLGLMVFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +G ++V F +   M       AE   +        +GIL   + +     +V
Sbjct: 60  LGGMMVVFGYTTAM------SAEEYPETWVSSWLVLGILVMSMFMELGMTLV 105


>gi|190349369|ref|YP_001974708.1| NADH dehydrogenase subunit 6 [Varanus salvator]
 gi|189182404|gb|ACD81921.1| NADH dehydrogenase subunit 6 [Varanus salvator]
          Length = 176

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 37/68 (54%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          Y+     ++ S ++ +  +P + V SL+     A G+ ++ G  F++++  ++Y+G + V
Sbjct: 6  YVMLGGLVVGSLMIGSNPSPFFGVVSLVLLAFVACGILVVSGYSFLSLVLFLIYLGGMTV 65

Query: 69 FFLFIIMM 76
           F + + M
Sbjct: 66 VFAYSVSM 73


>gi|215979649|ref|YP_002333152.1| NADH dehydrogenase subunit 6 [Takifugu porphyreus]
 gi|215422599|dbj|BAG85442.1| NADH dehydrogenase subunit 6 [Takifugu porphyreus]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 7   FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G  F+ ++ L++Y+
Sbjct: 1   MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLPLVLLMIYM 60

Query: 64  GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           G ++V F++   +       A    +          F  GIL   +++    +   S E 
Sbjct: 61  GGMLVVFIYSSALSANKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEEVWWGVSGEM 120

Query: 120 ELSRL 124
           +   +
Sbjct: 121 DWDAV 125


>gi|116668517|ref|YP_829501.1| NADH dehydrogenase subunit 6 [Apus apus]
 gi|116634260|emb|CAJ86564.1| NADH dehydrogenase subunit 6 [Apus apus]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 46/110 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F    +   ++    V +  +P Y V  L+ A V   G  + LG  FV+++  +VY+G
Sbjct: 2   TYFIVFLAVCFVLGGLAVASNPSPYYGVVGLVVASVVGCGWLVSLGLSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
            ++V F++ + +       A    +    G  F  +L   ++V       
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGDWRVMGYGVGFALVLILGVVVGGFVKGW 111


>gi|164519163|ref|YP_001648862.1| NADH dehydrogenase subunit 6 [Hyla japonica]
 gi|164454423|dbj|BAF96762.1| NADH dehydrogenase subunit 6 [Hyla japonica]
          Length = 165

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 42/103 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++F    +     V +  +P Y+   L+ +      + +  GA F++++  +VY+G ++V
Sbjct: 3   FMFEVGLVAGFLAVASNPSPYYAALGLVVSAGVGCLILMCGGASFLSLVLFLVYLGGMMV 62

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            F +   ++      A            ++ +L    +V   +
Sbjct: 63  VFAYSAALVAEPYPEAWGSVGVMIYLVGYLVLLGLWWVVGGGS 105


>gi|45388027|ref|NP_991013.1| NADH dehydrogenase subunit 6 [Megalops cyprinoides]
 gi|45259443|dbj|BAD12297.1| NADH dehydrogenase subunit 6 [Megalops cyprinoides]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +LF    ++    V +   P ++   L+       G+    G  F+++I  ++Y+G ++V
Sbjct: 6   FLFLVGLVLGFVAVASNPAPYFAALGLVVVAAIGCGMLASHGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
             +F+           E       LG   + + +  L+    +F  +     ++  +   
Sbjct: 66  --VFVYSAALAAEPYPESWGDWSVLGYVVVYLFSVGLVGGWLSFGWYGYSWVVADELEGF 123

Query: 129 N 129
           +
Sbjct: 124 S 124


>gi|207559936|gb|ACI24534.1| NADH dehydrogenase subunit 6 [Naemorhedus griseus]
          Length = 175

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFVTGLLMEFLMV 104


>gi|730208|sp|Q06059|NU6M_ANAPL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|13970|emb|CAA39143.1| ND6 [Anas platyrhynchos]
 gi|1945490|gb|AAB52615.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos]
          Length = 81

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 37/80 (46%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      ++    V +  +P Y V  L+ A V   G  L LG  FVA++  +VY G
Sbjct: 2  TYFVFFLGICFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYFG 61

Query: 65 AVIVFFLFIIMMLDIDIEVA 84
           ++V F++ + +       A
Sbjct: 62 GMLVVFVYSVALAAEPFPEA 81


>gi|332284475|ref|YP_004416386.1| putative monovalent cation/H+ antiporter subunit A [Pusillimonas
           sp. T7-7]
 gi|330428428|gb|AEC19762.1| putative monovalent cation/H+ antiporter subunit A [Pusillimonas
           sp. T7-7]
          Length = 789

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++   + I S+ +V+  R  +  + S+       A +FLL GA  +A     V   A+ V
Sbjct: 609 FVLPLLLIASTIMVLRSRGFVQGIISVGAVGFGVAVVFLLGGAPDLAFTQFSVE--ALSV 666

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
             L  + +  +     +PR  R       IG++   + +     +V     E
Sbjct: 667 VILLAV-IGHMPFRAIDPRPTRQRGRDALIGLMFGLMFIAVMFTVVALPFNE 717


>gi|215979635|ref|YP_002333139.1| NADH dehydrogenase subunit 6 [Takifugu pardalis]
 gi|215422585|dbj|BAG85429.1| NADH dehydrogenase subunit 6 [Takifugu pardalis]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 7   FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
            FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G  F++++ L++Y+
Sbjct: 1   MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60

Query: 64  GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           G ++V F++   +       A    +          F  GIL   +++    +   S E 
Sbjct: 61  GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEKVWWGVSGEM 120

Query: 120 ELSRL 124
           +   +
Sbjct: 121 DWDAV 125


>gi|119962588|ref|YP_949368.1| monovalent cation/H+ antiporter subunit A [Arthrobacter aurescens
           TC1]
 gi|119949447|gb|ABM08358.1| putative NADH ubiquinone oxidoreductase/Multisubunit Na+/H+
           antiporter, MnhA/B subunit [Arthrobacter aurescens TC1]
          Length = 1005

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +     ++ +   V       +V  +       A +F L GA  +A+  ++V     IV 
Sbjct: 613 VAGAGIVVGALAAVRANKRFLAVLMVSVTGYGIALMFALQGAPDLALTQMLV---ETIVL 669

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             F++ M  +  E+ +    R  +    IG      ++  + +
Sbjct: 670 VAFVLAMRSLPAELRDRTGGRLRVIRVIIGAAFGITMIFVAIY 712


>gi|126792918|gb|ABO27315.1| NADH dehydrogenase subunit 6 [Enicognathus leptorhynchus]
          Length = 170

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 39/70 (55%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        +++S LV +  +P Y V  L+F  +   G  + LGA FV+++  +VY+G +
Sbjct: 4  FLVFLGVSFVLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|5835608|ref|NP_007625.1|ND6_13977 NADH dehydrogenase subunit 6 [Scyliorhinus canicula]
 gi|6093587|sp|O79412|NU6M_SCYCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|3618242|emb|CAA76030.1| NADH 6 [Scyliorhinus canicula]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 4/112 (3%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
              I+    V +  +P Y+   L+ A     GL +  G  F+++I  ++Y+G ++V F +
Sbjct: 10  IGLILGLMGVASNPSPYYAALGLVTAAGVGCGLLVSYGGSFMSLILFLIYLGGMLVVFAY 69

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
              +         P     +    ++GI    L++    F+V       + +
Sbjct: 70  TAAL----AAEPYPEAWGDWSVLMYVGIYLTGLVIAGKYFLVGKWGDSWAGV 117


>gi|284177711|ref|YP_003406714.1| NADH dehydrogenase subunit 6 [Naemorhedus caudatus]
 gi|213990213|gb|ACJ60517.1| NADH dehydrogenase subunit 6 [Naemorhedus caudatus]
          Length = 175

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSIVFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFVTGLLMEFLMV 104


>gi|116014322|ref|YP_788141.1| NADH dehydrogenase subunit 6 [Verasper moseri]
 gi|115498281|gb|ABI98724.1| NADH dehydrogenase subunit 6 [Verasper moseri]
          Length = 173

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 42/113 (37%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFVMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F +   +       +         G  + G +     +    +   S 
Sbjct: 62  GMLVVFAYSAALAAEPYPESWGSWSVLVYGVVYTGGVMLVSGLFWGGWYESSW 114


>gi|37620572|gb|AAQ95095.1| NADH dehydrogenase subunit 6 [Ommatophoca rossii]
          Length = 175

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYVVFILSIIFVVSFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L   L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WISNKVVLGAFVMGLLLELLFAC 105


>gi|288932062|ref|YP_003436122.1| quinone oxidoreductase [Ferroglobus placidus DSM 10642]
 gi|288894310|gb|ADC65847.1| quinone oxidoreductase [Ferroglobus placidus DSM 10642]
          Length = 150

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 2/108 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L   L S +++  +  V   R+  YS   +    +   G +  LG   V  +   ++
Sbjct: 1   MSDLVVILLSALSVAMALGVAKSRDNFYSALYMSATLLAVGGTYAYLGVHSVLALIAFIF 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +GAV +  +   +                 L S F+ +     +   S
Sbjct: 61  IGAVGIITI--ALAATYRFINPVRHSGYWALFSAFVAVFLGTTLAVFS 106


>gi|92918423|gb|ABE96696.1| NADH dehydrogenase subunit 6 [Lepidochelys olivacea]
 gi|210971718|emb|CAJ90464.1| NADH dehydrogenase subunit 6 [Lepidochelys olivacea]
          Length = 174

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +LF F  +     V    +P Y V SL+       GL + +G  FV+++  ++Y+G ++V
Sbjct: 6   FLFGFCFVFWMVGVSCNPSPYYGVLSLVIGAAFGCGLLVSMGGSFVSVVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F +   +++     A   +       + +  +   +   A  + ++S EG  S  +  G
Sbjct: 66  IFAYSSALVEEPYPAAWGNRGGMI---YVVSYVLVIVGYGAMCYWLWSMEGYGSVTIDAG 122

Query: 129 N 129
            
Sbjct: 123 G 123


>gi|84626825|gb|ABC59816.1| NADH dehydrogenase subunit 6 [Psittacus erithacus]
          Length = 171

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 43/110 (39%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F         +++ LV +  +P Y V  L+   V   G  + LG  FV+++  +VY+G
Sbjct: 2   AYFVLFLGVSFALAALLVASNPSPHYGVVGLVLGSVAGCGWLVSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
            ++V F++ + +            +        +  +   L V      +
Sbjct: 62  GMLVVFVYCVSLAADPFPQVWEGWRVVGYALGLVLAVGVGLAVWGWGGGI 111


>gi|187250374|ref|YP_001874864.1| NADH dehydrogenase subunit 6 [Panthera tigris]
 gi|313768487|ref|YP_004062164.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis]
 gi|78709126|gb|ABB48052.1| NADH dehydrogenase subunit 6 [Panthera tigris]
 gi|145558795|gb|ABP73320.1| NADH dehydrogenase subunit 6 [Panthera tigris]
 gi|301506369|gb|ADK77660.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis]
 gi|301506383|gb|ADK77673.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTIFVVSFVSFSSKPSPIYGGLGLIVAGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   LG+F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGAFITGVLAELLTAC 105


>gi|110628418|gb|ABG79682.1| NADH dehydrogenase subunit 6 [Eleginops maclovinus]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 44/103 (42%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F YLF    ++   +V    +P ++ F L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   AYFVYLFMVGLVLGMAVVAVNLSPYFAAFGLVVVAGMGCGVIISFGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++   +       +             +G++    I+
Sbjct: 62  GMLVVFVYSAALAAEPFPESFGTTGAVLYFMGLVGVVGVFAIL 104


>gi|27228469|ref|NP_758791.1| NADH dehydrogenase subunit 6 [Alligator sinensis]
 gi|26284461|gb|AAN84928.1| NADH dehydrogenase subunit 6 [Alligator sinensis]
          Length = 171

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+   F  F    ++ + +V       ++V SL+F  V  +GL ++ G  F+ ++ L++Y
Sbjct: 1   MEITLF--FCCFMLVCAMMVAASSMIHFAVVSLLFVAVFGSGLVVVEGGSFMPLVVLLIY 58

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F F +   D            +G +  +++G+L          +
Sbjct: 59  LGGLLVVFAFCVGFTDDPFMGFWGVGVSKGAVFLYWVGLLIGICCAWGYLW 109


>gi|110747873|gb|ABG89466.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747881|gb|ABG89472.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747885|gb|ABG89475.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747889|gb|ABG89478.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747897|gb|ABG89484.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747909|gb|ABG89493.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747965|gb|ABG89535.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747973|gb|ABG89541.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747985|gb|ABG89550.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747989|gb|ABG89553.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110747993|gb|ABG89556.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748021|gb|ABG89577.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748045|gb|ABG89595.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748053|gb|ABG89601.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748065|gb|ABG89610.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748093|gb|ABG89631.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748097|gb|ABG89634.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748101|gb|ABG89637.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748153|gb|ABG89676.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748173|gb|ABG89691.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
 gi|110748201|gb|ABG89712.1| NADH dehydrogenase subunit 6 [Loxodonta africana]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 17/178 (9%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F + S   ++      +  +P+Y   SL+ +     G+ +  G  F+ ++  +VY
Sbjct: 1   MMYIVF-IMSVFYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIVMSSGGSFLGLVVFLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFS 116
           +G ++V  +F         E  E       + S F+  L  E+ +    F      + F 
Sbjct: 60  LGGMMV--VFGYTTAMATEEYPETWGSNVVVLSAFLVGLLMEIFMVMWLFSGEHELVGFY 117

Query: 117 AEGELSRLVFKGNNVENI------GKVLYTQYAYPLE-ISGFILLLSMIGAIVLMLRH 167
             G    +V      E +      G  LY+ Y +    ++G++L +S+  AI +  + 
Sbjct: 118 FSGLEGLMVLGEGGFEYVREDYSGGASLYS-YGFWFLAMAGWMLFVSIFIAIEVTRKR 174


>gi|2459595|gb|AAB71749.1| NADH dehydrogenase subunit 6 [Cuculus canorus canorus]
 gi|2459597|gb|AAB71750.1| NADH dehydrogenase subunit 6 [Cuculus canorus telephonus]
          Length = 155

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 35/75 (46%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  L LG  FV+++  ++Y+G ++V 
Sbjct: 2  FLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMIYLGGMLVV 61

Query: 70 FLFIIMMLDIDIEVA 84
          F++ + +       A
Sbjct: 62 FVYSVSLAADPFPEA 76


>gi|270267432|ref|YP_003331131.1| NADH dehydrogenase subunit 6 [Proedromys sp. BBH-2008]
 gi|213516901|gb|ACJ49882.1| NADH dehydrogenase subunit 6 [Proedromys liangshanensis]
          Length = 174

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             Y  S +  +         +PIY    LI +  +     L  G  F+ ++  ++Y+G +
Sbjct: 4   LIYFLSLVIALGCLGTSLKPSPIYGGLCLIVSGCSGCLAVLGFGGSFLGLMVFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   M   D   A       ++ S+    +    I      +  S+  E + ++ 
Sbjct: 64  LVVFGYTTAMSAEDYPEA-------WVSSWLTVGVLLMSIFMELGMLFVSSYYEGAEMML 116

Query: 127 KGNN 130
           + N+
Sbjct: 117 EFNS 120


>gi|226463957|ref|YP_002791209.1| NADH dehydrogenase subunit 6 [Chamaeleo monachus]
 gi|124055062|gb|ABM89680.1| NADH dehydrogenase subunit 6 [Chamaeleo monachus]
          Length = 169

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
            V +  +P +   SL  A +  AG+   L + FV+++ ++VY+G ++V F++ + M    
Sbjct: 15  GVASNPSPYFGAVSLALASILGAGVVAGLSSTFVSLVLMLVYLGGMLVVFVYSVAMSSDM 74

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
              A   +        F+G L          +
Sbjct: 75  YPEAWGNRSVFLYIIGFLGYLFCLWWYIGGEW 106


>gi|270153128|gb|ACZ61141.1| NADH dehydrogenase subunit 6 [Capra hircus]
 gi|270153170|gb|ACZ61180.1| NADH dehydrogenase subunit 6 [Capra hircus]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFITGLLMEFLMV 104


>gi|296099610|gb|ADG95216.1| NADH dehydrogenase subunit 6 [Polypterus delhezi]
          Length = 167

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS + ++S   V +  +P ++ F L+       G+ +  G  F++M+  ++Y+G 
Sbjct: 2   VLMVVFSIIFLVSLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMVLFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFM 113
           ++V F +   +       A    +     LG  F+ ++     V     +
Sbjct: 62  MLVVFAYSAALAAEPYPAAWGSWEVFSYVLGYMFLIVVGWVAFVGDFGLL 111


>gi|317097274|ref|YP_004123476.1| NADH dehydrogenase subunit 6 [Procapra przewalskii]
 gi|284176541|gb|ADB81007.1| NADH dehydrogenase subunit 6 [Procapra przewalskii]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEFLMV 104


>gi|207559908|gb|ACI24508.1| NADH dehydrogenase subunit 6 [Damaliscus pygargus]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 12/167 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMVYIVFILSIIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117
           +G ++V F +   M                LG+F  G+L   ++V          +VF  
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WVSNTTVLGAFVTGLLMEFMMVYYVLKDEEIEIVFKF 119

Query: 118 EGELSRLVFKGNNV-----ENIGK-VLYTQYAYPLEISGFILLLSMI 158
            G    +++   +      E +G   LY+   + + ++G+ LL+ ++
Sbjct: 120 NGLGDWVIYDTGDSGFFSEEAMGIAALYSYGTWLVIVTGWSLLVGVV 166


>gi|119360705|ref|YP_913664.1| NADH dehydrogenase subunit 6 [Homaloptera leonardi]
 gi|119225371|dbj|BAF41725.1| NADH dehydrogenase subunit 6 [Homaloptera leonardi]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 2/115 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL     I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G
Sbjct: 2   TYLVYLLLMALIVGLVAVASNPAPYFAALGLVMAAGVGCGVLVSHGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            ++V  +F            E    R  +G   + +L   L+V       +    
Sbjct: 62  GMLV--VFAYSAALAAEPFPEAWGDRSVVGYVLVYLLGVGLMVGLFWDNWYEGSW 114


>gi|156713133|dbj|BAF76631.1| NADH dehydrogenase subunit 6 [Asymmetron lucayanum]
          Length = 167

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 44/95 (46%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF+F  ++++ +V+  ++P +S  ++    +  +     +   F AMI +++Y+G ++V 
Sbjct: 5   LFNFTILLAAMMVIRAKSPYFSALAMALLALLLSITMFQMNLIFPAMILMLIYLGGMLVV 64

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104
           F++        I +         +     G+LA  
Sbjct: 65  FVYSTAYSADLIPLPMNMTLTLLIAISGTGLLATA 99


>gi|157011956|ref|YP_001315070.2| NADH dehydrogenase subunit 6 [Camelus bactrianus]
 gi|134302853|gb|ABO70671.1| NADH dehydrogenase subunit 6 [Camelus bactrianus]
 gi|134302867|gb|ABO70684.1| NADH dehydrogenase subunit 6 [Camelus bactrianus]
 gi|156615973|gb|ABM65776.2| NADH dehydrogenase subunit 6 [Camelus bactrianus]
 gi|223972301|dbj|BAH23339.1| NADH dehydrogenase subunit 6 [Camelus bactrianus]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +I      +  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYAVFILSIIFVIGFVSFSSKPSPIYGGLGLIVSGGVGCMIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F +   M            K       F  ++   ++VC  
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSNKTVLGAFIFGLVVEISMVVCVL 108


>gi|108793348|ref|YP_637060.1| NADH dehydrogenase subunit 6 [Lagorchestes hirsutus]
 gi|94481213|dbj|BAE94017.1| NADH dehydrogenase subunit 6 [Lagorchestes hirsutus]
          Length = 167

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 44/108 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +P+Y   SL+ +      + + L   F+ ++  +VY
Sbjct: 1   MKMMVVFLFSILLIFGFVAFASKPSPVYGGLSLVASGGLGCAIVVSLEDVFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F +   M   +   +            F  ++ +   + + 
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNTVALSMLLFAVVVESVWYLASG 108


>gi|72398619|gb|AAZ72727.1| NADH dehydrogenase subunit 6 [Physarum polycephalum]
          Length = 165

 Score = 36.9 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M++  +FF L  ++ +          N I+++ +LI  F+N + L  L  + F+    ++
Sbjct: 1  MLLSFIFFSLLLYITV--------TPNAIHALLALILLFINFSFLLFLTDSAFLGFAYIL 52

Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89
          VY+GA+ V FL+II++L +       R+ 
Sbjct: 53 VYIGAICVLFLYIILLLHLRSYTLMQRQN 81


>gi|327492875|ref|YP_004347834.1| NADH dehydrogenase subunit 6 [Phoxinus percnurus]
 gi|327396767|dbj|BAK14185.1| NADH dehydrogenase subunit 6 [Phoxinus percnurus]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 3/115 (2%)

Query: 8   FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F   S + +I   + V     P ++   L+ A     G+ +  G  F++++  ++Y+G +
Sbjct: 4   FVFLSLLVLIMGLIAVASNPTPYFAALGLVVAAGVGCGVLVSCGGSFLSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           +V  +F            E    R  +G   + ++   L+        +     +
Sbjct: 64  LV--VFAYSAALAAEPFPEAWGSRSVIGYVLVYLVGVSLMAGMFWGDWYGGSWVI 116


>gi|296099722|gb|ADG95320.1| NADH dehydrogenase subunit 6 [Polypterus teugelsi]
          Length = 167

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +FS + ++S   V +  +P ++   L+       G+ +  G  F+++I  +VY+G ++V 
Sbjct: 6   IFSVIFLVSLAAVASNPSPYFAALGLMMGAGAGCGMLMQCGMAFLSLILFLVYLGGMLVV 65

Query: 70  FLFIIMML--DIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           F + + +                  LG  F+ I+   + V
Sbjct: 66  FAYSVALTVEPYPYAWGSWEVFSYVLGYMFLVIVMWVMFV 105


>gi|126792904|gb|ABO27308.1| NADH dehydrogenase subunit 6 [Aratinga aurea]
          Length = 167

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        I +S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G +
Sbjct: 1  FLVFLGISFIXASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGM 60

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 61 LVVFVYSVSL 70


>gi|207559838|gb|ACI24443.1| NADH dehydrogenase subunit 6 [Capra falconeri]
 gi|207559866|gb|ACI24469.1| NADH dehydrogenase subunit 6 [Capra nubiana]
 gi|207559880|gb|ACI24482.1| NADH dehydrogenase subunit 6 [Capra pyrenaica]
 gi|207559894|gb|ACI24495.1| NADH dehydrogenase subunit 6 [Capra sibirica]
 gi|207559922|gb|ACI24521.1| NADH dehydrogenase subunit 6 [Hemitragus jemlahicus]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFITGLLMEFLMV 104


>gi|299828990|ref|YP_003734884.1| NADH dehydrogenase subunit 6 [Callorhinchus callorynchus]
 gi|299829031|ref|YP_003734922.1| NADH dehydrogenase subunit 6 [Callorhinchus capensis]
 gi|298110857|gb|ADI57812.1| NADH dehydrogenase subunit 6 [Callorhinchus callorynchus]
 gi|298110871|gb|ADI57825.1| NADH dehydrogenase subunit 6 [Callorhinchus capensis]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 6   LFFYLFSFMA-IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++F +   M  II    V +  +P ++ F L+ +     GL    G  F++ +  ++Y+G
Sbjct: 2   IYFVMLMLMCFIIGLVGVASNPSPYFAAFGLVMSAAIGCGLLASHGTSFLSFVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F++   +       AEP  +        + ++   L V    +  F     +  +
Sbjct: 62  GMLVVFVYSAALT------AEPYPESWLDWPVLVNVMMYLLGVGVGVYYFFGGWNMMHWM 115

Query: 125 VFKGNN 130
                N
Sbjct: 116 GVDELN 121


>gi|239735214|dbj|BAH70432.1| NADH dehydrogenase subunit 6 [Plica plica]
          Length = 174

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           M    F +   + I+   +VV    +P +    L+F+ V + GL + LG  FV+++  ++
Sbjct: 1   MVYALFIVL--VCIMGGLMVVASNPSPYFGAVGLVFSAVFSCGLLVELGGSFVSLVLFLI 58

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           Y+G ++V F + + +              G     +I ++     V    
Sbjct: 59  YLGGMLVVFAYSVALASDQYPETLGTWSVGVYSISYIFLVVVVWGVFIEG 108


>gi|149183030|ref|ZP_01861484.1| MrpA [Bacillus sp. SG-1]
 gi|148849260|gb|EDL63456.1| MrpA [Bacillus sp. SG-1]
          Length = 796

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L + + ++S+  ++  ++ + S+ +L     + A  F+L  A  +A+  LV+   +V   
Sbjct: 629 LIALVMVVSAVAILFAKSRLTSIIALGAVGYSVALFFVLFRAPDLALTQLVIETVSVA-- 686

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            LF++    +        +    LG+  I I    ++V       +S +   S   +   
Sbjct: 687 -LFLLCFYHLPPLSRHEERMSFKLGNALIAI-GVGVVVTLITIASYSTKLSSSISQYYIE 744

Query: 130 NV 131
           NV
Sbjct: 745 NV 746


>gi|49146284|ref|YP_025932.1| NADH dehydrogenase subunit 6 [Cucumaria miniata]
 gi|37730871|gb|AAR02394.1| NADH dehydrogenase subunit 6 [Cucumaria miniata]
          Length = 161

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 37/67 (55%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + FYLF    ++ S +V    +P Y+   L+ + +    +    G  F+A++ L++Y+G 
Sbjct: 1  MVFYLFMVFLLLGSTMVFYSLSPYYAALGLVLSSLFGCVILGFCGVSFLALLLLLIYMGG 60

Query: 66 VIVFFLF 72
          ++V F++
Sbjct: 61 MLVVFIY 67


>gi|288903282|ref|YP_003433927.1| NADH dehydrogenase subunit 6 [Epinephelus bruneus]
 gi|219562605|gb|ACL27755.1| NADH dehydrogenase subunit 6 [Epinephelus bruneus]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          M    + F +     I+ +  V +  +P +    L+       G+ +  G+ F+A+I  +
Sbjct: 1  MCFAVICFLIC---WIVGAIAVASNPSPFFGALGLVMVAGVGRGVLVEYGSPFLALILFL 57

Query: 61 VYVGAVIVFFLF 72
          +Y+G ++V F +
Sbjct: 58 IYLGGMLVVFAY 69


>gi|126792900|gb|ABO27306.1| NADH dehydrogenase subunit 6 [Pyrrhura picta]
          Length = 167

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G +
Sbjct: 1  FLVFLGVGFVLASLLVASXPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGM 60

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 61 LVVFVYSVSL 70


>gi|238866846|ref|YP_002929307.1| NADH dehydrogenase subunit 6 [Galago senegalensis]
 gi|238809367|dbj|BAH69193.1| NADH dehydrogenase subunit 6 [Galago senegalensis]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 43/106 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +L S + ++      +  +PIY    LI +     G+ +  G  F+ ++  +VY+G ++V
Sbjct: 6   FLLSMLFVLGFVGFSSKPSPIYGGLCLIISGGVGCGIVMGFGGTFMGLMVFLVYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
            F +   M   +   +       +       ++   LI+    + V
Sbjct: 66  VFGYTTAMATEEYPESWGSNMVVWGALLMGVVMEVVLILFMGEYGV 111


>gi|226453395|ref|YP_002791040.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|157778815|gb|ABV70944.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959394|gb|ADF48935.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959408|gb|ADF48948.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959422|gb|ADF48961.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959436|gb|ADF48974.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959450|gb|ADF48987.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959464|gb|ADF49000.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959478|gb|ADF49013.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959492|gb|ADF49026.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959506|gb|ADF49039.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959520|gb|ADF49052.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959534|gb|ADF49065.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959548|gb|ADF49078.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959562|gb|ADF49091.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959576|gb|ADF49104.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959590|gb|ADF49117.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959604|gb|ADF49130.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959618|gb|ADF49143.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959632|gb|ADF49156.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959646|gb|ADF49169.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959660|gb|ADF49182.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959674|gb|ADF49195.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959688|gb|ADF49208.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959702|gb|ADF49221.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959716|gb|ADF49234.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959730|gb|ADF49247.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959744|gb|ADF49260.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959758|gb|ADF49273.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959772|gb|ADF49286.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959786|gb|ADF49299.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959800|gb|ADF49312.1| NADH dehydrogenase subunit 6 [Bison bison]
 gi|294959814|gb|ADF49325.1| NADH dehydrogenase subunit 6 [Bison bison]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           +G ++V F +   M             +  LG+F  G+L
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFITGLL 98


>gi|166851930|ref|YP_001661340.1| NADH dehydrogenase subunit 6 [Hylomys suillus]
 gi|166788158|emb|CAP18916.1| NADH dehydrogenase subunit 6 [Hylomys suillus]
          Length = 176

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L  ++ S + ++   +  +  +PIY    LI +     G+ +  G  F+ M+  +VY
Sbjct: 1   MTILMSFILSGIFVVGFAIFSSKPSPIYGGVGLIVSGGVGCGIVMNYGGSFLGMLVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +G ++V F +    L +D         +  L    IG+++   +V  + + +
Sbjct: 61  LGGMLVVFGYT-TALAMDEYPEMWLTNKAVLAGLLIGLVSELALVLLAKYEI 111


>gi|55583410|ref|YP_138316.1| NADH dehydrogenase subunit 6 [Microhyla heymonsi]
 gi|46981661|gb|AAT07910.1| NADH dehydrogenase subunit 6 [Microhyla heymonsi]
          Length = 166

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F  + ++    V +  +  Y+   L+    +   + +  G  F++++  +VY+G ++V 
Sbjct: 2   IFELVLLVGFVAVASNPSLYYAALGLVVGAGSGCLMLINGGMTFLSLVLFLVYLGGMMVV 61

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           F +   ++      A       +   + +  + A L+V    ++++ + G 
Sbjct: 62  FAYSAALVAEPYPEA-------WGSVWVLSYIGAYLVVLTVGWLLWGSFGS 105


>gi|311788475|gb|ADQ12859.1| NADH dehydrogenase subunit 6 [Neosalanx anderssoni]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 2/110 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLAGLVLGLVAVASNPAPYFAALGLVVAAGAGCGILVGHGGPFLSLVLFLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            +F            E    R  LG     +LA  ++        + +  
Sbjct: 66  -VFAYSAALAAEPYPETWGDRSVLGYVVGYLLAVGVMAGWFWGGWYESSW 114


>gi|256824390|ref|YP_003148350.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit
           Na+/H+ antiporter subunit MnhA [Kytococcus sedentarius
           DSM 20547]
 gi|256687783|gb|ACV05585.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit
           Na+/H+ antiporter, MnhA subunit [Kytococcus sedentarius
           DSM 20547]
          Length = 978

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 32  VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91
           VF +       A LFLL GA  +A+  ++V   ++ V F+ ++  L +       R  R 
Sbjct: 631 VFLVGVTGYGVAMLFLLHGAPDLALTQVLVETVSIAV-FVLVLRRLPVKFRDFSTRLDRR 689

Query: 92  FLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
              +  I +     ++  +   V  A      L 
Sbjct: 690 LRWALGIAVGLVMFLLALTAAAVRQAPPASGILA 723


>gi|261866635|ref|YP_003264289.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama
           amblycephala tetraploid hybrid]
 gi|260595471|gb|ACX46727.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama
           amblycephala tetraploid hybrid]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLVGVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V  +F            E    R  LG   + +L   L+        +    
Sbjct: 60  LGGMLV--VFAYSAALAAEPYPEAWGSRSVLGYVLVYLLGVGLVAGFFWGGWYEGSW 114


>gi|226453460|ref|YP_002726322.1| NADH dehydrogenase subunit 6 [Fundulus grandis]
 gi|215511490|gb|ACJ67938.1| NADH dehydrogenase subunit 6 [Fundulus grandis]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 49/115 (42%), Gaps = 2/115 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  ++F LFS +  +++  V +  +P ++   L+       G+ +  G  F+++I  ++Y
Sbjct: 2   MYMMYFLLFSLVLGLAA--VASNPSPYFAALGLVVVAGIGCGVLIWHGGGFLSLILFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +                L   ++  +    ++ +S+    S 
Sbjct: 60  LGGMLVVFAYSAALAAEPYPEGWGSWPVLGLMLGYLLGVGGVGMLFSSSMYDGSW 114


>gi|157011976|ref|YP_001315083.2| NADH dehydrogenase subunit 6 [Camelus ferus]
 gi|156615980|gb|ABM65799.2| NADH dehydrogenase subunit 6 [Camelus ferus]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +I      +  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYAVFILSIVFVIGFVSFSSKPSPIYGGLGLIVSGGVGCMIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F +   M            K       F  ++   ++VC  
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSNKTVLGAFIFGLVVEIAMVVCVL 108


>gi|197311211|ref|YP_002154528.1| NADH dehydrogenase subunit 6 [Menidia menidia]
 gi|197304272|dbj|BAG69231.1| NADH dehydrogenase subunit 6 [Menidia menidia]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 45/108 (41%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++    V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLIGLVLGLVAVASNPSPYFAALGLVAVAGVGCGILVGHGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
            F +   +       +    +   LG  + G+     +V + N+   S
Sbjct: 66  VFAYSTALAAERHPESWGSLQVLGLGLVYAGVTVMTALVFSGNWYSAS 113


>gi|19032393|gb|AAL83413.1| NADH dehydrogenase subunit 6 [Trichosurus caninus]
          Length = 167

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +PIY   SL+ +    + + + L   F+ ++  +VY
Sbjct: 1   MKMMVVFLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLENTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M   +   +       F    F   +       +    V +A
Sbjct: 61  LGGMLVVFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEIEVDTA 115


>gi|296099666|gb|ADG95268.1| NADH dehydrogenase subunit 6 [Polypterus mokelembembe]
          Length = 167

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS + +IS   V +  +P ++ F L+       G+ +  G  F++M+  ++Y+G 
Sbjct: 2   VLMVVFSVIFLISLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMVLFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNF 112
           ++V F +   +       A    +     LG  F+ I+A  + V     
Sbjct: 62  MLVVFAYSAALAAEPYPHAWGSWEVFSYVLGYMFLVIVAWVMFVGDLGL 110


>gi|134302891|gb|ABO70707.1| NADH dehydrogenase subunit 6 [Camelus ferus]
 gi|134302905|gb|ABO70720.1| NADH dehydrogenase subunit 6 [Camelus ferus]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +I      +  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYAVFILSIVFVIGFVSFSSKPSPIYGGLGLIVSGGVGCMIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F +   M            K       F  ++   ++VC  
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSNKTVLGAFIFGLVVEIAMVVCVL 108


>gi|225423191|gb|ACN91094.1| NADH dehydrogenase subunit 6 [Tetraophasis szechenyii]
 gi|238550591|gb|ACR44442.1| NADH dehydrogenase subunit 6 [Tetraophasis szechenyii]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2  TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVNLGVSFVSLALFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86


>gi|189492636|gb|ACE01346.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S   + T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGLATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|27543959|dbj|BAC54785.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFVTGLLMELFMV 104


>gi|280978431|ref|YP_003345357.1| NADH dehydrogenase subunit 6 [Stemonidium hypomelas]
 gi|13928182|dbj|BAB47116.1| NADH dehydrogenase subunit 6 [Stemonidium hypomelas]
 gi|271280576|dbj|BAI53378.1| NADH dehydrogenase subunit 6 [Stemonidium hypomelas]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF  + ++    V +   P ++   L+ A     G+    G  FVA++  ++Y+G +
Sbjct: 4   FIFLFLVVLMLGFLGVASNPAPYFAALGLVLATAGGCGILAGFGGSFVALVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +V  +F            E       LG     +L   L V
Sbjct: 64  LV--VFAYSAALAAEPYPESWGDWSVLGYVIGYLLLCGLGV 102


>gi|325126759|ref|YP_004285904.1| NADH dehydrogenase subunit 6 [Aratinga pertinax chrysogenys]
 gi|304365501|gb|ADM26311.1| NADH dehydrogenase subunit 6 [Aratinga pertinax chrysogenys]
          Length = 170

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 1/114 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F        +++S LV +  +P Y V  L+F  V   G  + LGA FV+++  +VY+G +
Sbjct: 4   FLVFLGISFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +V F++ + +       A   R   G++  F    +   +      F V + + 
Sbjct: 64  LVVFVYSVSLAADPFPQAWGGRHAVGYVLGFVPAGVGLVVWGWGGGFKVGTVDS 117


>gi|280978334|ref|YP_003345267.1| NADH dehydrogenase subunit 6 [Facciolella oxyrhyncha]
 gi|271280758|dbj|BAI53482.1| NADH dehydrogenase subunit 6 [Facciolella oxyrhyncha]
          Length = 172

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 36/70 (51%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F +LF  M ++    V +  +P ++   L+ +     G+    G  FV+++  ++Y+G +
Sbjct: 4  FIFLFLIMLVLGVVGVASNPSPYFAALGLVVSAAGGCGILAGYGGSFVSLVLFLIYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F + + +
Sbjct: 64 LVVFAYSVAL 73


>gi|7555774|ref|NP_054670.1|ND6_15288 NADH dehydrogenase subunit 6 [Ciconia boyciana]
 gi|7416030|dbj|BAA93659.1| NADH dehydrogenase subunit 6 [Ciconia boyciana]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 47/103 (45%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +L      + +  V +  +P Y V  L+ A V   G  L LGA FV+++  +VY+G
Sbjct: 2   AYFMFLLGGCFALGALAVASNPSPYYGVVGLVVASVVGCGWLLSLGASFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A   ++    G   I +L     V
Sbjct: 62  GMLVVFVYSVALAADPFPEAWGSRQVVMYGVGLILVLMVGGAV 104


>gi|786226|gb|AAC09440.1| cob intron3 ORF [Marchantia polymorpha]
          Length = 1224

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 22/128 (17%)

Query: 41  NAAGLFLLLGAEFVAMITLVVYVG--------AVIVFFLFIIMMLDIDIEVAEPRKKRGF 92
            A+  F+++   F   +    Y           V++  L I+      I    P  +  F
Sbjct: 88  GASMFFIVVYLHFFRGLYYGSYASPRELVWCLGVVILLLMIVTAF---IGYVLPWGQMSF 144

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT-QYAYPLEISGF 151
            G+  I  LA+ + V     + +   G      F  +N        ++  Y  P  I+G 
Sbjct: 145 WGATVITSLASAIPVVGDTIVTWLWGG------FSVDNATL--NRFFSLHYLLPFIIAGA 196

Query: 152 -IL-LLSM 157
            IL L ++
Sbjct: 197 SILHLAAL 204


>gi|322422796|ref|YP_004222584.1| NADH dehydrogenase subunit 6 [Clupeonella cultriventris]
 gi|317176549|dbj|BAJ54361.1| NADH dehydrogenase subunit 6 [Clupeonella cultriventris]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 40/102 (39%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +   P ++ F L+ +      +  + G  F+A+   ++Y+G ++V F +   
Sbjct: 13  VLGMVGVASNPAPYFAAFGLVLSSGAGCAVLAMFGTPFLALGLFLIYLGGMLVVFGYSAA 72

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +                   F++ ++   L+    ++   SA
Sbjct: 73  LAADPHPETWGDASVFEHAMFYLALVVGGLLYFGPSWYDLSA 114


>gi|298110829|gb|ADI57786.1| NADH dehydrogenase subunit 6 [Ovis ammon]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFVTGLLMEFFMV 104


>gi|153127174|ref|YP_001382093.1| NADH dehydrogenase subunit 6 [Meles anakuma]
 gi|152962745|dbj|BAF73981.1| NADH dehydrogenase subunit 6 [Meles meles anakuma]
          Length = 177

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F+LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGFALIIGGAVGCGVVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F +G+L+  L+ 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVVGLLSELLMA 104


>gi|146149049|ref|YP_001165454.1| NADH dehydrogenase subunit 6 [Microhyla ornata]
 gi|94315535|gb|ABF14630.1| NADH dehydrogenase subunit 6 [Microhyla ornata]
          Length = 167

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    ++    V +  +P ++   L+    +   + +  G  F++++  +VY+G ++V 
Sbjct: 2   VFELWLLVGFVAVASNPSPYFAALGLVVGAGSGCLMLINGGLTFLSLVLFLVYLGGMMVV 61

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           F +   ++      A       +   + +  +   L+V    ++++ +E 
Sbjct: 62  FAYSAALVAEPYPEA-------WGSVWVLSYIGVYLLVLTVGWLLWGSEA 104


>gi|7549737|ref|NP_054683.1|ND6_15289 NADH dehydrogenase subunit 6 [Ciconia ciconia]
 gi|7416046|dbj|BAA93673.1| NADH dehydrogenase subunit 6 [Ciconia ciconia]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L      + +  V +  +P Y V  L+ A V   G  L LGA FV+++  +VY+G
Sbjct: 2   AYFMLLLGGCFALGALAVASNPSPYYGVVGLVVASVVGCGWLLSLGASFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A   ++    G   I +L     V
Sbjct: 62  GMLVVFVYSVSLAADPFPEAWGSRQVVMYGVGLILVLMVGGAV 104


>gi|294494409|gb|ADE93080.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494412|gb|ADE93082.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494415|gb|ADE93084.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494418|gb|ADE93086.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494421|gb|ADE93088.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494424|gb|ADE93090.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494427|gb|ADE93092.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494430|gb|ADE93094.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494433|gb|ADE93096.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494436|gb|ADE93098.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494439|gb|ADE93100.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494442|gb|ADE93102.1| NADH dehydrogenase subunit 6 [Seriola zonata]
 gi|294494445|gb|ADE93104.1| NADH dehydrogenase subunit 6 [Seriola zonata]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +  +   E    R    ++  +  G++    +     +
Sbjct: 62  GMLVVFAYSAALAAEPYPETWGSRPVVAYMAVYLAGVVLVSALFWGGWY 110


>gi|242616520|ref|YP_003002019.1| NADH dehydrogenase subunit 6 [Pavo muticus]
 gi|166066514|gb|ABY80770.1| NADH dehydrogenase subunit 6 [Pavo muticus]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   ++Y+G
Sbjct: 2  TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFVSLALFMIYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR 86


>gi|166065765|gb|ABY80080.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492594|gb|ACE01307.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492664|gb|ACE01372.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493868|gb|ACE02490.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|62184380|ref|YP_220574.1| NADH dehydrogenase subunit 6 [Mus musculus molossinus]
 gi|167716848|ref|YP_001686709.1| NADH dehydrogenase subunit 6 [Mus musculus musculus]
 gi|50302083|gb|AAT74384.1| NADH dehydrogenase subunit 6 [Mus musculus molossinus]
 gi|111380600|gb|ABH09680.1| NADH dehydrogenase subunit 6 [Mus musculus musculus]
 gi|118200807|gb|ABK79273.1| NADH dehydrogenase subunit 6 [Mus musculus musculus]
 gi|118200835|gb|ABK79299.1| NADH dehydrogenase subunit 6 [Mus musculus molossinus]
          Length = 172

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++    +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FVLSSLFLVGCLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   M   +            LG   +G++    ++ A N+
Sbjct: 66  VFGYTTAMATEEYPETWG-SNWLILGFLVLGVIMEVFLIYALNY 108


>gi|116672415|ref|YP_833348.1| putative monovalent cation/H+ antiporter subunit A [Arthrobacter
           sp. FB24]
 gi|116612524|gb|ABK05248.1| multisubunit sodium/proton antiporter, MrpA subunit / multisubunit
           sodium/proton antiporter, MrpB subunit [Arthrobacter sp.
           FB24]
          Length = 1014

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +     +I +   V       +V  +       A +F L GA  +A+  ++V     I+ 
Sbjct: 629 VAGAGIVIGALAAVRANKRFLAVLMVSVTGYGIALMFALQGAPDLALTQMLV---ETIIL 685

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
             F++ M  +  E+ +    +  +    IG      ++  + +
Sbjct: 686 VAFVLAMRSLPAELRDRTGGKYRVIRVIIGAAFGVTMIFVAIY 728


>gi|115494675|ref|YP_778628.1| NADH dehydrogenase subunit 6 [Bufo gargarizans]
 gi|82395918|gb|ABB72539.1| NADH dehydrogenase subunit 6 [Bufo gargarizans]
          Length = 164

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 41/105 (39%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    I+    V +  +P Y+   L+ +      + +  GA F+ ++  +VY+G ++V 
Sbjct: 4   LFELGLIVGLLAVASNPSPYYAALGLVGSAGAGCLILMDGGASFLCLVLFLVYLGGMMVV 63

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           F +   ++      A            +  +L    +V   N  V
Sbjct: 64  FAYSAALVAEPYPEAWGGGVVWSYIVVYTVLLGVWWVVGGVNNQV 108


>gi|327555423|gb|AEB01042.1| NADH dehydrogenase subunit 6 [Crocodylus acutus]
 gi|327555437|gb|AEB01055.1| NADH dehydrogenase subunit 6 [Crocodylus intermedius]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G 
Sbjct: 3  ITFFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62

Query: 66 VIVFFLFIIMMLD 78
          ++V F F +   D
Sbjct: 63 LLVVFAFCVGFTD 75


>gi|225690856|gb|ACO06112.1| NADH dehydrogenase subunit 6 [Paralichthys dentatus]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F  ++    V +  +P ++ F L+       G+ +  G  F++++  ++Y+G ++V F +
Sbjct: 10  FCLVLGLVAVASNPSPYFAAFGLVIVAGMGCGVLIGHGGPFLSLVLFLIYLGGMLVVFAY 69

Query: 73  IIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112
              +       +   R    +  S+ IG++ A ++     +
Sbjct: 70  SAALAAEPYPESWGSRPVLVYSASYMIGVVLASVMFWGGWY 110


>gi|225622229|ref|YP_002726517.1| NADH dehydrogenase subunit 6 [Eretmochelys imbricata]
 gi|99079658|gb|ABF66064.1| NADH dehydrogenase subunit 6 [Eretmochelys imbricata]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 39/80 (48%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          +LF F  +     V    +P Y V SL+       GL + +G  FV+++  ++Y+G ++V
Sbjct: 6  FLFGFCFVFWMVGVSCNPSPYYGVLSLVLGAAFGCGLLVSMGGSFVSVVLFLIYLGGMLV 65

Query: 69 FFLFIIMMLDIDIEVAEPRK 88
           F +   +++    VA   +
Sbjct: 66 IFAYSSALVEEPYPVAWGNR 85


>gi|294494448|gb|ADE93106.1| NADH dehydrogenase subunit 6 [Seriola zonata]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +  +   E    R    ++  +  G++    +     +
Sbjct: 62  GMLVVFAYSAALAAEPYPETWGSRPVVAYMAVYLAGVVLVSALFWGGWY 110


>gi|332886774|dbj|BAK22898.1| NADH dehydrogenase subunit 6 [Salmostoma bacaila]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 2/117 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
             F Y F    ++    + +   P +    L+ A     G+ +  G  F++++  ++Y+G
Sbjct: 2   DFFIYFFLLALVLGLISIASNPTPYFGALGLVVASGVGCGILVSCGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            ++V  +F            E       + S  I +L   L V       +      
Sbjct: 62  GMLV--VFAYSTALAADSYPEAWGSWSVIWSVLIYLLGVSLAVAFFWGEWYEGSWAA 116


>gi|238550647|gb|ACR44494.1| NADH dehydrogenase subunit 6 [Lophophorus sclateri]
          Length = 173

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 36/80 (45%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
             F  ++    V +  +P Y V  L+ A V   G  + LG  F+++   ++Y+G ++V 
Sbjct: 7  FLGFCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLALFMIYLGGMLVV 66

Query: 70 FLFIIMMLDIDIEVAEPRKK 89
          F++ + +       A    +
Sbjct: 67 FVYSVSLAADPYPEAWGDWR 86


>gi|298292394|ref|YP_003694333.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
           DSM 506]
 gi|296928905|gb|ADH89714.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
           DSM 506]
          Length = 1129

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 20/105 (19%)

Query: 95  SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
             +IG+L+   +V  +   V   +   + +       E +G VL+T Y         +L+
Sbjct: 571 GHYIGVLSLLALVIGAILGVIYFQATFAPVAEA----EAVGSVLFTLYF-------ILLI 619

Query: 155 LSMIGA--IVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197
           ++ + A   VL    RR         Q ESN   +++M ++++ K
Sbjct: 620 IAGVAAWLFVLAQESRR-------VAQEESNRQTALLMREIEAHK 657


>gi|62184394|ref|YP_220704.1| NADH dehydrogenase subunit 6 [Mystacina tuberculata]
 gi|61660116|gb|AAX50189.1| NADH dehydrogenase subunit 6 [Mystacina tuberculata]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +IS     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MTVYVAFILSIIFVISFVGFSSKPSPIYGGLGLIVSGGVGCGIVISFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +   M             +  +G    G+L   ++V +
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVMGGLVSGLLMEGMLVLS 106


>gi|25057779|ref|NP_740008.1| NADH dehydrogenase subunit 6 [Indostomus paradoxus]
 gi|25005983|dbj|BAC23604.1| NADH dehydrogenase subunit 6 [Indostomus paradoxus]
          Length = 170

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 41/103 (39%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    +     V +  +P Y  F L+ A     G+ +  GA F+A+I  +VY+G ++V 
Sbjct: 7   LFMIGFVAGLVAVASNPSPYYGAFGLVVAGGMGCGILVSHGAAFLALILFLVYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +            +       ++ +L     +   N+
Sbjct: 67  FAYAAALAAEPYPEGLLSGEVAIYVGVYVLVLFLGASMFLGNW 109


>gi|108793320|ref|YP_637021.1| NADH dehydrogenase subunit 6 [Phascolarctos cinereus]
 gi|94481171|dbj|BAE93978.1| NADH dehydrogenase subunit 6 [Phascolarctos cinereus]
          Length = 168

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  +  YLFSF+ +IS     +  +P+Y   SL+ +      + + LG+ F+ +I  +
Sbjct: 1   MDMVMMV-YLFSFLLVISFVAFASKPSPVYGGLSLVVSGGLGCAIVVSLGSTFLGLIMFL 59

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           V  G ++V F +   M   +   +            F+ +L            V +  G
Sbjct: 60  VIFGGMLVVFGYTAAMSTEEYPESWVSNTVALGMLLFVLLLKLIWYFVLDKVEVATVIG 118


>gi|187250360|ref|YP_001874851.1| NADH dehydrogenase subunit 6 [Panthera pardus]
 gi|21310360|gb|AAM46196.1| NADH dehydrogenase subunit 6 [Panthera leo]
 gi|21310363|gb|AAM46198.1| NADH dehydrogenase subunit 6 [Panthera leo]
 gi|145558781|gb|ABP73307.1| NADH dehydrogenase subunit 6 [Panthera pardus]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTIFVVSFVSFSSKPSPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   LG+F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGAFITGVLAELLTAC 105


>gi|19032396|gb|AAL83415.1| NADH dehydrogenase subunit 6 [Trichosurus caninus]
          Length = 167

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +PIY   SL+ +    + + + L   F+ ++  +VY
Sbjct: 1   MKMMVVFLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLENTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M   +   +       F    F   +       +    V +A
Sbjct: 61  LGGMLVVFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEVEVDTA 115


>gi|52459787|ref|YP_089647.1| NADH dehydrogenase subunit 6 [Gegeneophis ramaswamii]
 gi|42406104|gb|AAS13703.1| NADH dehydrogenase subunit 6 [Gegeneophis ramaswamii]
          Length = 165

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       +  +  V +  +P ++   L+ +      + + L   F+++I  ++Y
Sbjct: 1   MEYMIFLGL-IGLVFGTIGVASNPSPYFAALGLVVSAAAGCLVLVGLNMSFLSLILFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A       F    ++ IL     + 
Sbjct: 60  LGGMLVVFAYSAAMAAEPYPEAWGNFSVVFYVMVYLIILLIGFSLL 105


>gi|110346915|ref|YP_665734.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus]
 gi|82697223|emb|CAH18628.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus]
 gi|110083410|dbj|BAE97415.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus]
          Length = 175

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + F     + ++   LV       Y V SL+FA V ++GL ++ G  F+ ++ L++Y+G
Sbjct: 2   EIAFLFLCCLMLVGVVLVAAGATTHYGVVSLLFAAVLSSGLLVVGGGSFMPIVVLLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAE 104
            ++V F F +   D +  E       +G  G   +G++   
Sbjct: 62  GLLVVFAFCVGFTDDEYCEFWGTGASKGVAGVCGVGLMVMG 102


>gi|212725520|ref|YP_002317270.1| NADH dehydrogenase subunit 6 [Trachemys scripta]
 gi|211906395|gb|ACJ11690.1| NADH dehydrogenase subunit 6 [Trachemys scripta]
          Length = 174

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 49/108 (45%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SL+    +  G+ + +G  F++++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVLSLVLGAASGCGVLVGMGGSFMSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +V F +   ++     V             F+ +++  +I+ +  + V
Sbjct: 64  LVVFAYSSALVAEPYPVGWGSLGGLVYVVGFVLLVSGLVIMGSFLYGV 111


>gi|93007406|ref|YP_581747.1| NADH dehydrogenase subunit 6 [Platysternon megacephalum]
 gi|78157480|gb|ABB22855.1| NADH dehydrogenase subunit 6 [Platysternon megacephalum]
          Length = 174

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 46/106 (43%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SLI    +  G+ + +G  FV+++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVLSLILGAASGCGVLVSVGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +V F +   ++     +             ++ ++   +++    +
Sbjct: 64  LVIFAYSAALVAEPYPIGWGSLWGVVYMVVYVLVIIGLVVIGHWLW 109


>gi|77020053|ref|YP_337835.1| NADH dehydrogenase subunit 6 [Pantholops hodgsonii]
 gi|74419068|gb|ABA03268.1| NADH dehydrogenase subunit 6 [Pantholops hodgsonii]
          Length = 175

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFITGLLMEFFMV 104


>gi|25057759|ref|NP_739982.1| NADH dehydrogenase subunit 6 [Neocyttus rhomboidalis]
 gi|25005955|dbj|BAC23578.1| NADH dehydrogenase subunit 6 [Neocyttus rhomboidalis]
          Length = 173

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P Y+   L+       G+ ++ G  F++++  ++Y+G ++V F +   +       
Sbjct: 21  SNPSPYYAALGLVLVAGAGCGILVVCGGGFLSLVLFLIYLGGMLVVFAYSAAL------A 74

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           AEP  +     + F  +L   ++V  +++       E S +  
Sbjct: 75  AEPYPEAWGGRAVFGYVLIYIMLVLGASWWAGGGWYEGSWVPV 117


>gi|261864020|gb|ACY01511.1| NADH dehydrogenase subunit 6 [Capra hircus]
          Length = 175

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFVTGLLMEFLMV 104


>gi|256427193|ref|YP_003126964.1| NADH dehydrogenase subunit 6 [Labracoglossa argentiventris]
 gi|256353345|dbj|BAH97855.1| NADH dehydrogenase subunit 6 [Labracoglossa argentiventris]
          Length = 173

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 43/113 (38%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF    I+    V +  +P ++   L+       G+ +  G  F+ ++  ++Y+G
Sbjct: 2   TFVMSLFLVCLIVGLVAVASNPSPYFAALGLVVVSGMGCGVLVGHGGSFLPLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F +   +       +   +      + ++ ++     +  S +   S 
Sbjct: 62  GMLVVFAYCSALAAEPYPESWGSRAVAVYMASYVALVLVMAGLLWSGWYESSW 114


>gi|254939410|dbj|BAH86718.1| NADH dehydrogenase subunit 6 [Oryzias marmoratus]
          Length = 173

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 62/154 (40%), Gaps = 9/154 (5%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YLF    ++    V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLFLIGLVLGLAAVASNPSPYFAALGLVLVAGMGCGVLVGHGGAFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSR 123
            F +   +                L  F++ I+               ++V     E S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVTLLMVFYLFIVGLMGSYLCEGWFEGTWIVVDEFYEFSL 125

Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSM 157
               G  +     ++Y+   + L ++G++LLLS+
Sbjct: 126 FRGDGGGIA----LIYSSGGFILILAGWVLLLSL 155


>gi|156142574|gb|ABU52052.1| NADH dehydrogenase subunit 6 [Tiaris olivaceus]
          Length = 166

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1   FLGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELS 122
           F++ + +        E     G +G  F IG++    ++ +  F + + EG ++
Sbjct: 61  FVYSVSLAA--EPYPEAWGSSGVIGYGFGIGLVVVVGLMVSGVFGLLTGEGTVN 112


>gi|14010705|ref|NP_114345.1| NADH dehydrogenase subunit 6 [Macaca sylvanus]
 gi|13940429|emb|CAC37988.1| NADH subunit 6 [Macaca sylvanus]
          Length = 175

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F   S + ++      +  +PIY   +LI + V    + L  G  +V ++  +VY
Sbjct: 1   MTYILF-TLSVLLVMGFVGFSSKPSPIYGGLALIVSGVVGCVIVLNCGGAYVGLMMFLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +  M + I+            LG F +G++   +++  
Sbjct: 60  LGGMMVVFGYT-MAMAIEEYPETWGSGFEVLGGFLVGLMMEVVLILW 105


>gi|256833647|ref|YP_003162374.1| NADH dehydrogenase (quinone) [Jonesia denitrificans DSM 20603]
 gi|256687178|gb|ACV10071.1| NADH dehydrogenase (quinone) [Jonesia denitrificans DSM 20603]
          Length = 1003

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
           + + +  LV   R  + ++  + F   + A +FLL GA  +A+  ++V    ++V  L +
Sbjct: 625 VIVPAVILVARARRRVKAIVLMGFGGYSIAAIFLLHGAPDLALTQVLVETVTIVVMVLVL 684

Query: 74  IMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASN 111
             +     +      + G L  +  +G+ A  L V   N
Sbjct: 685 RRLPPYFSDRPLRASRFGRLALAIVVGVFAMALAVIIPN 723


>gi|62184436|ref|YP_220548.1| NADH dehydrogenase subunit 6 [Chirocentrus dorab]
 gi|58430857|dbj|BAD89200.1| NADH dehydrogenase subunit 6 [Chirocentrus dorab]
          Length = 180

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 9  YLFSFMAIISSFLVVTVRN---PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          YL     +      V + +   P ++   L+   V+   + +  GA F+A++  ++Y+G 
Sbjct: 8  YLIGVSLVGMVLGTVALASNPAPYFAALGLVAVCVSGGVVLMGXGAPFLALVLFLIYLGG 67

Query: 66 VIVFFLF 72
          ++V F +
Sbjct: 68 MLVVFAY 74


>gi|332886788|dbj|BAK22911.1| NADH dehydrogenase subunit 6 [Macrochirichthys macrochirus]
          Length = 173

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + +I    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLVAL-VIGLIAVASNPTPYFAALGLVVAAGVGCGILVSCGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V  +F            E    R  +G   + +L   L+        +    
Sbjct: 60  LGGMLV--VFAYSAALAAEPFPEAWGSRSVVGYVLVYLLGVILVAGLFWGGWYEGSW 114


>gi|327492903|ref|YP_004347860.1| NADH dehydrogenase subunit 6 [Phoxinus percnurus sachalinensis]
 gi|327396781|dbj|BAK14198.1| NADH dehydrogenase subunit 6 [Phoxinus percnurus sachalinensis]
          Length = 173

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 8   FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F   S + +I   + V     P ++   L+ A     G+ +  G  F++++  ++Y+G +
Sbjct: 4   FVFLSLLVLIVGLIAVASNPTPYFAALGLVVAAGVGCGVLVSCGGSFLSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   +       AEP  +     S    +L   + V     M +    E S ++ 
Sbjct: 64  LVVFAYSAAL------AAEPFPEAWGSRSVIGYVLVYLVGVSLMAGMFWGGWYEGSWVII 117

Query: 127 KG 128
            G
Sbjct: 118 DG 119


>gi|218157355|ref|YP_002364586.1| NADH dehydrogenase subunit 6 [Epinephelus lanceolatus]
 gi|215789149|gb|ACJ69598.1| NADH dehydrogenase subunit 6 [Epinephelus lanceolatus]
 gi|325126956|gb|ADY85989.1| NADH dehydrogenase subunit 6 [Epinephelus lanceolatus]
          Length = 173

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M    + F +     I+ +  V +  +P +  F L+       G+ +  G+ F+A+I  +
Sbjct: 1   MCFTIICFLIC---WIVGAIAVASNPSPFFGAFGLVVVAGVGCGILVEYGSSFLALILFL 57

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +Y+G ++V F +   +       +        ++  + + ++    +       VFS   
Sbjct: 58  IYLGGMLVVFAYSAALAAEPYPESWLNSTVVVYMCCYAVAVMVGVSVFWHGWVGVFSGSA 117

Query: 120 E 120
           +
Sbjct: 118 D 118


>gi|16356979|ref|NP_443630.1|ND6_15838 NADH dehydrogenase subunit 6 [Zeus faber]
 gi|16267193|dbj|BAB70324.1| NADH dehydrogenase subunit 6 [Zeus faber]
          Length = 173

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 38/94 (40%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P Y+   L+       G+ +  G  F++++  ++Y+G ++V F +   +       
Sbjct: 21  SNPSPYYAALGLVLVAGAGCGVLVACGGGFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           A   +        +IG++    +   S +   S 
Sbjct: 81  AWGGRAVFGYVVIYIGLVLGAALWAGSGWYEGSW 114


>gi|207560006|gb|ACI24599.1| NADH dehydrogenase subunit 6 [Pseudois nayaur]
          Length = 175

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M            K   LG+F  G+L   L+V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFVTGLLMEFLMV 104


>gi|157690796|ref|YP_001488953.1| NADH dehydrogenase subunit 6 [Camelus dromedarius]
 gi|157394473|gb|ABV53319.1| NADH dehydrogenase subunit 6 [Camelus dromedarius]
          Length = 175

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +I      +  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYVVFILSIIFVIGFISFSSKPSPIYGGLGLIVSGGVGCMIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G++   ++V 
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKTVLGAFIFGLVVEIIMVI 105


>gi|27543973|dbj|BAC54798.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus]
          Length = 175

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFVTGLLMEFFMV 104


>gi|28975373|gb|AAO61763.1| NADH dehydrogenase subunit 6 [Geranoaetus melanoleucus australis]
 gi|28975375|gb|AAO61764.1| NADH dehydrogenase subunit 6 [Geranoaetus melanoleucus
           melanoleucus]
 gi|281308332|gb|ADA58314.1| NADH dehydrogenase subunit 6 [Geranoaetus melanoleucus]
          Length = 172

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2   AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G+  + +L   +I   +
Sbjct: 62  GMLVVFVYSVCLAADPFPEAWGDWRVLGYGAGMVLVLVVGVIAGGA 107


>gi|67005619|gb|AAY62418.1| NADH dehydrogenase subunit 6 [Testudo graeca]
          Length = 174

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y VFSL+       G+ + +G  FV++I  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +V F +   +                 G  ++  +   ++   S +
Sbjct: 64  MVIFAYSCALAAEPYPAGWGTLDVVIYGLCYLVCVLWLMLTDYSWW 109


>gi|55583452|ref|YP_138303.1| NADH dehydrogenase subunit 6 [Kaloula pulchra]
 gi|46981647|gb|AAT07897.1| NADH dehydrogenase subunit 6 [Kaloula pulchra]
          Length = 167

 Score = 36.5 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    ++    V +  +P ++ F L+    +   L +  G  F++++  +VY+G ++V 
Sbjct: 2   VFELWLLVGFVAVASNPSPYFAAFGLVAGAGSGCLLLMKDGLTFLSLVLFLVYLGGMMVV 61

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   ++        P     F    +IG+ A  L+V    +
Sbjct: 62  FAYSAALVAEPY----PEAWGDFWVLSYIGVYALVLVVGWLLW 100


>gi|270267362|ref|YP_003331066.1| NADH dehydrogenase subunit 6 [Vicugna vicugna]
 gi|213389360|gb|ACJ45799.1| NADH dehydrogenase subunit 6 [Vicugna vicugna]
          Length = 175

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S M +I      +  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIMFVIGFISFSSKPSPIYGGLGLIVSGGVGCMIVLSYGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G++   L+V 
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKTVLGTFIFGLVVEMLMVI 105


>gi|170292913|gb|ACB12497.1| NADH dehydrogenase subunit 6 [Pseudolabrus sieboldi]
          Length = 173

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F LF    ++    V +  +P ++   L+       G+ +  G   ++++  ++Y+G 
Sbjct: 5   LSFLLFGL--VMGLIAVASNPSPYFAALGLVVVAGMGCGVLVSYGGPILSLVLFLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F +   +       AEP  +  F GS  + +      V  +   ++S   E+S + 
Sbjct: 63  MLVVFAYSAAL------AAEPYPESWFSGSVAMYMGVYIFGVVLAGVPLWSGWYEVSWVP 116

Query: 126 FK 127
             
Sbjct: 117 AD 118


>gi|84488662|ref|YP_448801.1| NADH dehydrogenase subunit 6 [Testudo graeca]
 gi|67005605|gb|AAY62405.1| NADH dehydrogenase subunit 6 [Testudo graeca]
          Length = 174

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y VFSL+       G+ + +G  FV+++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +V F +   +       AEP           +  L   + V       +S  G
Sbjct: 64  MVIFAYSCAL------AAEPYPGSWGTLDVVVYGLCYLICVLWLMLTDYSWWG 110


>gi|13242641|ref|NP_077656.1| EsV-1-171 [Ectocarpus siliculosus virus 1]
 gi|13177441|gb|AAK14585.1|AF204951_170 EsV-1-171 [Ectocarpus siliculosus virus 1]
          Length = 1233

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 151 FILLLSMI--GAIVLMLRHRRDIKRQDIS-KQLESNPDNSI 188
            IL+++++  GAI+L    +++   ++   KQ  S  + S+
Sbjct: 6   VILIVALVVAGAILLTKHRKKNGSTEEPFQKQFSSRNEISL 46


>gi|108561428|ref|YP_626726.1| NADH dehydrogenase subunit 6 [Canis latrans]
 gi|91702687|gb|ABE48244.1| NADH dehydrogenase subunit 6 [Canis latrans]
 gi|91702715|gb|ABE48270.1| NADH dehydrogenase subunit 6 [Canis latrans]
 gi|189494344|gb|ACE02932.1| NADH dehydrogenase subunit 6 [Canis latrans]
 gi|255761441|gb|ACU32813.1| NADH dehydrogenase subunit 6 [Vulpes vulpes]
          Length = 175

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|50234078|ref|YP_052708.1| NADH dehydrogenase subunit 6 [Bos indicus]
 gi|60101836|ref|YP_209216.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|237869054|ref|YP_002907385.1| NADH dehydrogenase subunit 6 [Bos javanicus]
 gi|292486459|ref|YP_003541095.1| NADH dehydrogenase subunit 6 [Bos primigenius]
 gi|128808|sp|P03924|NU6M_BOVIN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|75053324|sp|Q71PB7|NU6M_BOSIN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|18034143|gb|AAL57372.1|AF416451_1 NADH dehydrogenase subunit 6 [Bos indicus]
 gi|12812|emb|CAA24006.1| unnamed protein product [Bos taurus]
 gi|19919704|gb|AAM08328.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|19919718|gb|AAM08341.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|20149079|gb|AAM12800.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|20149093|gb|AAM12813.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|27543917|dbj|BAC54746.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus]
 gi|27543931|dbj|BAC54759.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus]
 gi|27543945|dbj|BAC54772.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus]
 gi|27543987|dbj|BAC54811.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus]
 gi|27544001|dbj|BAC54824.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus]
 gi|33321659|gb|AAQ06591.1| NADH dehydrogenase subunit 6 [Bos indicus]
 gi|33321673|gb|AAQ06604.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|37545837|gb|AAM95741.1| NADH dehydrogenase subunit 6 [Bos indicus]
 gi|37960027|gb|AAP47840.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|37960041|gb|AAP47853.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|37960055|gb|AAP47866.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|37960069|gb|AAP47879.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|42521324|gb|AAS18253.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56410906|gb|AAV88121.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56410920|gb|AAV88134.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56410934|gb|AAV88147.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56410948|gb|AAV88160.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56410962|gb|AAV88173.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56410976|gb|AAV88186.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56410990|gb|AAV88199.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411004|gb|AAV88212.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411018|gb|AAV88225.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411032|gb|AAV88238.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411046|gb|AAV88251.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411060|gb|AAV88264.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411074|gb|AAV88277.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411088|gb|AAV88290.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411102|gb|AAV88303.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411116|gb|AAV88316.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411130|gb|AAV88329.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411144|gb|AAV88342.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|56411158|gb|AAV88355.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987480|gb|AAZ16531.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987494|gb|AAZ16544.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987508|gb|AAZ16557.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987522|gb|AAZ16570.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987536|gb|AAZ16583.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987550|gb|AAZ16596.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987564|gb|AAZ16609.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987578|gb|AAZ16622.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987592|gb|AAZ16635.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987606|gb|AAZ16648.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987620|gb|AAZ16661.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987634|gb|AAZ16674.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987648|gb|AAZ16687.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987662|gb|AAZ16700.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987676|gb|AAZ16713.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987690|gb|AAZ16726.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987704|gb|AAZ16739.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987718|gb|AAZ16752.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987732|gb|AAZ16765.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987746|gb|AAZ16778.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987760|gb|AAZ16791.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987774|gb|AAZ16804.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987788|gb|AAZ16817.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987802|gb|AAZ16830.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987816|gb|AAZ16843.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987830|gb|AAZ16856.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987844|gb|AAZ16869.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987858|gb|AAZ16882.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987872|gb|AAZ16895.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987886|gb|AAZ16908.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987900|gb|AAZ16921.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987914|gb|AAZ16934.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987928|gb|AAZ16947.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987942|gb|AAZ16960.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987956|gb|AAZ16973.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987970|gb|AAZ16986.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987984|gb|AAZ16999.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70987998|gb|AAZ17012.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70988012|gb|AAZ17025.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70988026|gb|AAZ17038.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70988040|gb|AAZ17051.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70988054|gb|AAZ17064.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70988068|gb|AAZ17077.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70988082|gb|AAZ17090.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70988096|gb|AAZ17103.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70988110|gb|AAZ17116.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70988124|gb|AAZ17129.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|70988138|gb|AAZ17142.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778031|gb|ABV70216.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778045|gb|ABV70229.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778059|gb|ABV70242.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778073|gb|ABV70255.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778087|gb|ABV70268.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778101|gb|ABV70281.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778115|gb|ABV70294.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778129|gb|ABV70307.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778143|gb|ABV70320.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778157|gb|ABV70333.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778171|gb|ABV70346.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778185|gb|ABV70359.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778199|gb|ABV70372.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778213|gb|ABV70385.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778227|gb|ABV70398.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778241|gb|ABV70411.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778269|gb|ABV70437.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778283|gb|ABV70450.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778297|gb|ABV70463.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778311|gb|ABV70476.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778325|gb|ABV70489.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778339|gb|ABV70502.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778353|gb|ABV70515.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778367|gb|ABV70528.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778381|gb|ABV70541.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778395|gb|ABV70554.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778409|gb|ABV70567.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778423|gb|ABV70580.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778437|gb|ABV70593.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778451|gb|ABV70606.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778465|gb|ABV70619.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778479|gb|ABV70632.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778493|gb|ABV70645.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778507|gb|ABV70658.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778521|gb|ABV70671.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778535|gb|ABV70684.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778549|gb|ABV70697.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778563|gb|ABV70710.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778577|gb|ABV70723.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778591|gb|ABV70736.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778605|gb|ABV70749.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778619|gb|ABV70762.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778633|gb|ABV70775.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778647|gb|ABV70788.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778661|gb|ABV70801.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778675|gb|ABV70814.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778689|gb|ABV70827.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778703|gb|ABV70840.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778717|gb|ABV70853.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778731|gb|ABV70866.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778745|gb|ABV70879.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778759|gb|ABV70892.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778773|gb|ABV70905.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|157778801|gb|ABV70931.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|229501226|gb|ACQ73760.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|229501240|gb|ACQ73773.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|229501254|gb|ACQ73786.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|229501268|gb|ACQ73799.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|229501282|gb|ACQ73812.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|229501296|gb|ACQ73825.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|229501310|gb|ACQ73838.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|229501324|gb|ACQ73851.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|229501338|gb|ACQ73864.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|233142556|gb|ACQ91133.1| NADH dehydrogenase subunit 6 [Bos javanicus]
 gi|237780773|gb|ACR19418.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|237780787|gb|ACR19431.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|270486458|gb|ACZ83022.1| NADH dehydrogenase subunit 6 [Bos indicus]
 gi|291463834|gb|ADE05538.1| NADH dehydrogenase subunit 6 [Bos primigenius]
 gi|294679603|gb|ADF29608.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959828|gb|ADF49338.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959842|gb|ADF49351.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959856|gb|ADF49364.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959870|gb|ADF49377.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959884|gb|ADF49390.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959898|gb|ADF49403.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959912|gb|ADF49416.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959926|gb|ADF49429.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959940|gb|ADF49442.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959954|gb|ADF49455.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959968|gb|ADF49468.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959982|gb|ADF49481.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294959996|gb|ADF49494.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|294960024|gb|ADF49520.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977279|gb|ADN11786.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977293|gb|ADN11799.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977307|gb|ADN11812.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977321|gb|ADN11825.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977335|gb|ADN11838.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977349|gb|ADN11851.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977363|gb|ADN11864.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977377|gb|ADN11877.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977391|gb|ADN11890.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977405|gb|ADN11903.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977419|gb|ADN11916.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977433|gb|ADN11929.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977447|gb|ADN11942.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977461|gb|ADN11955.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977475|gb|ADN11968.1| NADH dehydrogenase subunit 6 [Bos taurus]
 gi|306977489|gb|ADN11981.1| NADH dehydrogenase subunit 6 [Bos taurus]
          Length = 175

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFVTGLLMEFFMV 104


>gi|257062357|gb|ACV40194.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|25057432|ref|NP_740229.1| NADH dehydrogenase subunit 6 [Polypterus senegalus senegalus]
 gi|25006462|dbj|BAC23956.1| NADH dehydrogenase subunit 6 [Polypterus senegalus senegalus]
          Length = 167

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS + ++S   V +  +P ++ F L+       G+ +  G  F+++I  ++Y+G 
Sbjct: 2   VLMVVFSVIFLVSLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSVILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIV 107
           ++V F +   +       A    +     LG   + I+   + V
Sbjct: 62  MLVVFAYSAALAAEPYPPAWGSWEVFSYVLGYMVLVIMVWAVFV 105


>gi|300743740|ref|ZP_07072760.1| conserved hypothetical protein [Rothia dentocariosa M567]
 gi|300380101|gb|EFJ76664.1| conserved hypothetical protein [Rothia dentocariosa M567]
          Length = 568

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           V AV++  L ++ +     +     +K  +L +F++ + A  ++     F +  A     
Sbjct: 3   VTAVLILILAVLHLARYKQKPKRLLRKIEWLRTFYVWLGALAILGGTWAFFLPIALNSGF 62

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-----DIKRQDIS 177
                G  +  +  ++Y         +G IL     G I L   HRR     D   QD +
Sbjct: 63  NKDDDGPALRQL--LIY--------ATGGIL-----GVITLGETHRRNNLEKDKNNQDHT 107

Query: 178 KQLESNPDNS 187
           +Q+ +   N 
Sbjct: 108 RQVHAERRNR 117


>gi|226463944|ref|YP_002727999.1| NADH dehydrogenase subunit 6 [Chamaeleo dilepis]
 gi|124055048|gb|ABM90420.1| NADH dehydrogenase subunit 6 [Chamaeleo dilepis]
          Length = 170

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 2/135 (1%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
            V +  +P +   SL  A +  AG+ +   + F++++ ++VY+G ++V F++ + M   D
Sbjct: 15  GVASNPSPYFGAVSLALASIFGAGIVVGFSSTFISLVLMLVYLGGMLVVFVYSVAM-SSD 73

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT 140
           +       +  FL      +    L  C     +F      S ++  G  V+  G VL  
Sbjct: 74  MYPEAWGSRSVFLYIVGFVVYLFCLWWCIGGEWLFDGSVIGSAILLDGVTVDLGGVVLLY 133

Query: 141 QY-AYPLEISGFILL 154
            +      I G +LL
Sbjct: 134 SFGGVCFLILGVMLL 148


>gi|326535921|ref|YP_004300366.1| NADH dehydrogenase subunit 6 [Crocodylus moreletii]
 gi|312844614|gb|ADR03180.1| NADH dehydrogenase subunit 6 [Crocodylus moreletii]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G 
Sbjct: 3  ITFFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62

Query: 66 VIVFFLFIIMMLD 78
          ++V F F +   D
Sbjct: 63 LLVVFAFCVGFTD 75


>gi|119360425|ref|YP_913547.1| NADH dehydrogenase subunit 6 [Pungtungia herzi]
 gi|119225245|dbj|BAF41608.1| NADH dehydrogenase subunit 6 [Pungtungia herzi]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFILLVAL-VVGLIAVASNPTPYFAALGLVVAAGVGCGVLIGCGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +   +       A   R   G++ ++ +G++ A  +     +
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLTYLVGVILAAGLFWGGWY 110


>gi|19032390|gb|AAL83411.1| NADH dehydrogenase subunit 6 [Trichosurus vulpecula]
          Length = 167

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +PIY   SL+ +    + + + L   F+ ++  +VY
Sbjct: 1   MKMMVVFLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLENTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M   +   +       F    F   +       +    V +A
Sbjct: 61  LGGMLVVFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEVEVDTA 115


>gi|155624795|gb|ABU24808.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   L  F  G+LA  LI C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLIAC 105


>gi|281308330|gb|ADA58313.1| NADH dehydrogenase subunit 6 [Geranoaetus melanoleucus]
          Length = 172

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2   AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G+  + +L   +I   +
Sbjct: 62  GMLVVFVYSVCLAADPFPEAWGDWRVLGYGAGMVLVLVVGVIAGGA 107


>gi|221145643|ref|YP_002519922.1| NADH dehydrogenase subunit 6 [Amanses scopas]
 gi|219806961|dbj|BAH10328.1| NADH dehydrogenase subunit 6 [Amanses scopas]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P ++   L+       G+ L  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLVVGLLAVASNPSPYFAALGLVVVAGLGCGVLLGHGGCFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
           F +   +       AEP  +    G   + +L    +V  +     S   E S +    +
Sbjct: 67  FAYSAAL------AAEPYPESWGSGPVVVALLWYFFMVGVAAAFFRSGWYEYSWVPADES 120

Query: 130 NVENIGK 136
            V  +G+
Sbjct: 121 GVFAMGR 127


>gi|124055188|gb|ABM89797.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon]
          Length = 169

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
            V +  +P +   SL  A V  AG+   L + F++++ ++VY+G ++V F++ + M    
Sbjct: 15  GVASNPSPYFGGVSLALASVFGAGVMAGLSSTFISLVLMLVYLGGMLVVFIYSVAMSSDM 74

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
              A   +        F+G L          +
Sbjct: 75  YPEAWGNRSVFLYVVGFLGYLFCLWWYMGGKW 106


>gi|76009078|gb|ABA39001.1| NADH dehydrogenase subunit 6 [Leucopternis kuhli]
 gi|281308356|gb|ADA58326.1| NADH dehydrogenase subunit 6 [Leucopternis kuhli]
          Length = 172

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|327492553|ref|YP_004347455.1| NADH dehydrogenase subunit 6 [Arothron hispidus]
 gi|327492581|ref|YP_004347481.1| NADH dehydrogenase subunit 6 [Arothron meleagris]
 gi|327392530|dbj|BAK09962.1| NADH dehydrogenase subunit 6 [Arothron hispidus]
 gi|327392544|dbj|BAK09975.1| NADH dehydrogenase subunit 6 [Arothron meleagris]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 43/108 (39%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           F +   +                    ++GI+A   ++    F  +S 
Sbjct: 67  FAYSAALAAEPYPETLGSWPVLASMLMYLGIVALVFVLFLGGFGEYSW 114


>gi|195933691|ref|YP_002117995.1| NADH dehydrogenase subunit 6 [Echinococcus ortleppi]
 gi|145207885|dbj|BAF56544.1| NADH dehydrogenase subunit 6 [Echinococcus ortleppi]
          Length = 151

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+++      F  + +       T     Y V  ++ A + +   +++ G  + +++  +
Sbjct: 1   MLLEVFIAMYFCVLMLFCF----TSHCIYYCVLLVVNALLASCICYVVYGFSWYSLLLCL 56

Query: 61  VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVG V V F+F+ +   +    +     + G   SF  G+L   L+  A   + FS 
Sbjct: 57  VYVGGVYVLFIFVSVFGPNSSFVLYRSAWELGLCVSFGFGLLICGLVYYALIDVEFSG 114


>gi|327555451|gb|AEB01068.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
 gi|327555465|gb|AEB01081.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G 
Sbjct: 3   ITFFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104
           ++V F F +   D              L       L   
Sbjct: 63  LLVVFAFCVGFTDDKYCEFWGAGGSKVLACVCGVGLGIG 101


>gi|9801582|ref|NP_063912.1| NADH dehydrogenase subunit 6 [Lama pacos]
 gi|9558355|emb|CAC00513.1| NADH6 [Lama pacos]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S M +I      +  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIMFVIGFISFSSKPSPIYGGLGLIVSGGVGCMIVLSYGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +    +  +         +  LG+F  G++   L+V 
Sbjct: 61  LGGMMVVFGYT-TAMPTEQYPDVWVSNKTVLGAFTFGLVVEMLMVV 105


>gi|76009076|gb|ABA39000.1| NADH dehydrogenase subunit 6 [Leucopternis semiplumbeus]
          Length = 172

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|14039332|gb|AAK53179.1| NADH dehydrogenase subunit 6 [Galaxias brevipinnis]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPAPYFAALGLVVAAGVGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78

Query: 82  EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
             +   R   G++ ++F+G+L    +     +
Sbjct: 79  PESWGDRSVLGYVLAYFVGVLVTAGLFWGGWY 110


>gi|188039038|ref|YP_001905920.1| NADH dehydrogenase subunit 6 [Antedon mediterranea]
 gi|183014005|emb|CAL50597.1| NADH dehydrogenase subunit 6 [Antedon mediterranea]
          Length = 163

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 42/90 (46%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          +L +   +  S LV    +P +S   L+   +++  L   +G  F+A+I L+VY+G +++
Sbjct: 4  FLINITLLFGSSLVFYSISPYFSALGLVIVSISSCFLLSKIGISFLALILLLVYMGGMLI 63

Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           F++   + +          +   L   F+
Sbjct: 64 VFIYSSAITNDRFPTISNINEITILSIIFL 93


>gi|295065507|ref|YP_003587277.1| NADH dehydrogenase subunit 6 [Bison bonasus]
 gi|294679589|gb|ADF29595.1| NADH dehydrogenase subunit 6 [Bison bonasus]
 gi|311788325|gb|ADQ12703.1| NADH dehydrogenase subunit 6 [Bison bonasus]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVVFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFVTGLLMEFFMV 104


>gi|187373165|ref|YP_001876480.1| NADH dehydrogenase subunit 6 [Mus terricolor]
 gi|164370739|gb|ABY51647.1| NADH dehydrogenase subunit 6 [Mus terricolor]
          Length = 172

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++    +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FVLSSLFLVGCLGLALKPSPIYGGLGLIISGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
             +F         E  E       + SF +  +  E+ V   
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWLILSFLVLGVVMEIFVIYM 105


>gi|84488733|ref|YP_448763.1| NADH dehydrogenase subunit 6 [Neogymnocrinus richeri]
 gi|66731067|gb|AAY51821.1| NADH dehydrogenase subunit 6 [Neogymnocrinus richeri]
          Length = 164

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y+     +  S  V    +P YS   L    ++   +   + A F+A+I L+VY+G ++V
Sbjct: 4   YISVITLLFGSSFVFYSLSPYYSALGLAIVSISGCLILTHISASFLALILLLVYMGGMLV 63

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F++    L  D              SFFI +    L    +     +     S +  +G
Sbjct: 64  VFVYS-SALSTDRFPYISNTAEIISLSFFIIVWTTILYNNTNWNTTNTNFNLTSLVDIEG 122


>gi|289183243|ref|YP_003457224.1| NADH dehydrogenase subunit 6 [Cryptopsaras couesii]
 gi|288909035|dbj|BAI77272.1| NADH dehydrogenase subunit 6 [Cryptopsaras couesii]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 36/98 (36%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       G+    GA F++++  +VY+G ++V F +   +   
Sbjct: 17  ICVASNPSPYFAALGLVVVAGLGCGVLAYYGASFLSLVLFLVYLGGMLVVFAYSAALAAE 76

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
               A   +        ++        +    +  F+ 
Sbjct: 77  PYPEAFGSRNVSLPAGAYLWGSLLSFFLLLDGWDEFAW 114


>gi|32307235|gb|AAP79105.1| NADH dehydrogenase subunit 6 [Uropsilus soricipes]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 14/160 (8%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +    + S + ++S     +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MVTYIELILSTILVLSFVGFCSKPSPIYGGLGLIVSGGVGCGVVLNYGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFS 116
           +G ++V  +F         E  E       +    +    AEL+            +V +
Sbjct: 61  LGGMLV--VFGYTTAMAMEEYPEVWTSNYTVLGLLVSGFVAELLFMGYLASDEKLEIVLN 118

Query: 117 AEGELSRLVFKGNNV-----ENIGK-VLYTQYAYPLEISG 150
             G+   +++   +      E +G   LY+   + + ++G
Sbjct: 119 FNGQGDWVIYDTGDSGFFSEEAMGIAALYSYGYWLVIVTG 158


>gi|327492567|ref|YP_004347468.1| NADH dehydrogenase subunit 6 [Canthigaster valentini]
 gi|327392278|dbj|BAK09728.1| NADH dehydrogenase subunit 6 [Canthigaster valentini]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 39/94 (41%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V F +   +       
Sbjct: 21  SNPSPYFGALSLVAVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
                      S +IG+++   ++    +  +S 
Sbjct: 81  TLGSWPVLASMSMYIGVVSLVFVLFLGGWGEYSW 114


>gi|138892609|ref|YP_001127589.1| NADH dehydrogenase subunit 6 [Mauremys mutica]
 gi|90576894|gb|ABD95490.1| NADH dehydrogenase subunit 6 [Mauremys mutica]
          Length = 174

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 49/99 (49%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVGMGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           +V F +   ++     V     +  F G +++ I+   +
Sbjct: 64  LVIFAYSSALMAEPFPVGWLSLEGVFYGLYYLFIIVVFM 102


>gi|326535963|ref|YP_004300405.1| NADH dehydrogenase subunit 6 [Crocodylus johnsoni]
 gi|312227691|gb|ADQ52682.1| NADH dehydrogenase subunit 6 [Crocodylus johnsoni]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 40/73 (54%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F+L   + + S  LV +     Y V SL+FA +  +GL  + G  F+ ++ L++Y+G 
Sbjct: 3  ITFFLLCCLMMASVVLVASGVAIHYGVVSLLFAAMFGSGLLAMGGGSFMPLVVLLIYLGG 62

Query: 66 VIVFFLFIIMMLD 78
          ++V F F +   D
Sbjct: 63 LLVVFAFCVGFTD 75


>gi|225690866|gb|ACO06117.1| NADH dehydrogenase subunit 6 [Pseudopleuronectes yokohamae]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFVMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGILVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +     S  +  +     V   + + +    E S +
Sbjct: 62  GMLVVFAYSAAL------AAEPYPESWGSWSVMVYGVVYVAGVVVVSALFWGGWYESSWV 115

Query: 125 VFK 127
           +  
Sbjct: 116 LVD 118


>gi|294960010|gb|ADF49507.1| NADH dehydrogenase subunit 6 [Bos taurus]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++ ++F  + S + ++      +  +PIY    LI +     G+ L  G  F+ ++  +
Sbjct: 1   MMLYTVF--ILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFL 58

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +Y+G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 59  IYLGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFVTGLLMEFFMV 104


>gi|126792916|gb|ABO27314.1| NADH dehydrogenase subunit 6 [Aratinga solstitialis]
          Length = 170

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 39/70 (55%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        +++S LV +  +P Y V  L+F  +   G  + LGA FV+++  +VY+G +
Sbjct: 4  FXVFLGTSFVLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|5835313|ref|NP_007353.1|ND6_11617 NADH dehydrogenase subunit 6 [Arbacia lixula]
 gi|1321885|emb|CAA56606.1| NADH dehydrogenase subunit 6 [Arbacia lixula]
          Length = 162

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 12/168 (7%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +  YL     ++ S LV    +P YS   L+   ++      L+G  F+A++ L+VY+G 
Sbjct: 1   MIIYLSLVCLLVGSTLVFYSLSPYYSALGLVVVSISGCISLSLIGGSFIALVLLLVYMGG 60

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F +           +    +R    S    ++       +  F+ F    E S   
Sbjct: 61  MLVVFAY----------SSAISAERFPSVSNISEVIGLSAFFSSWVFLSFDNLNETSNCS 110

Query: 126 FK-GNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171
               +N   +G  + Y   +  + +  FIL + ++GA+++      +I
Sbjct: 111 STIISNEGVLGSSIFYNDGSVLVVLGVFILFIVLVGALIISRGAENNI 158


>gi|2459603|gb|AAB71753.1| NADH dehydrogenase subunit 6 [Cacomantis sepulcralis]
          Length = 156

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V    +P Y V  L+ A V   G  L LG  FV+++  +VY+G  +V 
Sbjct: 3  FLGVCFVLGGLAVAXNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVWFMVYLGGXLVV 62

Query: 70 FLFIIMMLDIDIEVAEPRKK 89
          F++ + +       A    +
Sbjct: 63 FVYSVSLAADPFSGAWGDWR 82


>gi|310007463|gb|ADP00773.1| NADH dehydrogenase subunit 6 [Dicentrarchus punctatus]
          Length = 172

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 4/157 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+     F+L  F  I+S   V    +P Y  F L+        + +  G  F+A+I ++
Sbjct: 1   MMTYVACFFLGGF--ILSMVAVACNPSPFYGAFGLVAVAGFGCAVVVGSGGTFLALILVM 58

Query: 61  VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-FSAE 118
           +YVGA++V F++   +  D   E        G  G + +G++ A        + V +   
Sbjct: 59  IYVGAMLVVFVYSAALAADRYPESWGTGGVAGQAGGYLLGLIVAFSFFWKEEYGVSWDYG 118

Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155
           G +     +  ++  +  +  +     +  +G +LL 
Sbjct: 119 GGVEEGASQRGDISGVSWMYSSGGPLLVISAGALLLT 155


>gi|257062405|gb|ACV40218.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|126792893|gb|ABO27302.1| NADH dehydrogenase subunit 6 [Ara ararauna]
          Length = 170

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 40/72 (55%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        I++S LV +  +P Y V  L+F  +   G  + LG+ FV+++  +VY+G
Sbjct: 2  TYFLVFLGVSFILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGSSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|126792885|gb|ABO27297.1| NADH dehydrogenase subunit 6 [Anodorhynchus hyacinthinus]
 gi|126792888|gb|ABO27299.1| NADH dehydrogenase subunit 6 [Anodorhynchus hyacinthinus]
          Length = 170

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        +++S LV +  +P Y V  LIF  V   G    LGA FV+++  +VY+G +
Sbjct: 4  FLVFLGISFVLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|322823913|gb|EFZ29513.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 885

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 30/156 (19%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + S+ F+    + +  +   ++ R P  SV        N  G+ L L   F+ ++     
Sbjct: 654 LSSVVFFFAITVFLRKTLGTISCRAPWRSVSY--TTMFNLDGIMLTLFGYFMLVLL---- 707

Query: 63  VGAVIVFFLFIIMMLDIDI---------------EVAEPRKKRGFLGSFFIGILAAELIV 107
                  F F ++                     E    R     +  + IGI  A  + 
Sbjct: 708 -----ATFAFALVYSRWHTREEIEAHVQEFQALPEFWTFRNTTKVVAVYVIGIGQALCLG 762

Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143
                 ++     +       +    IG VLY  + 
Sbjct: 763 YLMKLWIYRTSNVVWNWEASPS----IGAVLYMTFL 794


>gi|226453486|ref|YP_002791053.1| NADH dehydrogenase subunit 6 [Mus musculus castaneus]
 gi|118200793|gb|ABK79260.1| NADH dehydrogenase subunit 6 [Mus musculus castaneus]
          Length = 172

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++    +    +PIY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FVLSSLFLVGCLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   M   +            LG   +G++    ++   N+
Sbjct: 66  VFGYTTAMATEEYPETWG-SNWLILGFLVLGVIMEVFLIYVLNY 108


>gi|49146247|ref|YP_026115.1| NADH dehydrogenase subunit 6 [Macaca mulatta]
 gi|47156221|gb|AAT11997.1| NADH dehydrogenase subunit 6 [Macaca mulatta]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F   S + ++      +  +PIY   +LI + V    + L  G  ++ ++  +VY
Sbjct: 1   MTYILF-ALSVLLVMGFVGFSSKPSPIYGGLALIVSGVIGCVIVLSCGGAYMGLMMFLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +    + I+            LG   +G++   ++V  
Sbjct: 60  LGGMMVVFGYT-TAMAIEEYPETWGSGFEVLGGLLVGLMMEVMLVLW 105


>gi|257062397|gb|ACV40214.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLMLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|311788449|gb|ADQ12835.1| NADH dehydrogenase subunit 6 [Lepidogalaxias salamandroides]
          Length = 168

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF  + ++    V +  +P Y V +L+F     A + +  G  F++++  ++Y+G ++V 
Sbjct: 8   LFISLLVVGFIGVASNPSPYYGVLNLVFTAGFGAAVIVSYGGSFLSLVLFLIYLGGMLVV 67

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           F + + +        E   K   + S   G     +IV
Sbjct: 68  FAYSVALYT------ESYPKAWGMWSVVYGFFVLLVIV 99


>gi|5835083|ref|NP_008164.1|ND6_10513 NADH dehydrogenase subunit 6 [Patiria pectinifera]
 gi|6225783|sp|Q33817|NU6M_ASTPE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
          Full=NADH dehydrogenase subunit 6
 gi|1060989|dbj|BAA03876.1| NADH-dehydrogenase subunit 6 [Patiria pectinifera]
          Length = 162

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + FY    +  + S LV    +P Y    L+   ++   L  LLG  F+A++ +++YVG 
Sbjct: 1  MIFYTVLVLMFLGSTLVFYSLSPYYGALGLVLVALSGCLLCSLLGFSFIALVLILIYVGG 60

Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
          ++V F++   +            +   L S  I
Sbjct: 61 MLVVFVYSTAISAERYPSVSNFNEILVLSSLVI 93


>gi|323489600|ref|ZP_08094827.1| DNA translocase ftsK (DNA translocase SpoIIIE) [Planococcus
           donghaensis MPA1U2]
 gi|323396731|gb|EGA89550.1| DNA translocase ftsK (DNA translocase SpoIIIE) [Planococcus
           donghaensis MPA1U2]
          Length = 782

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 35/179 (19%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + + +   + +  + L++     I  +F  I  ++     FL+     ++++ + VY
Sbjct: 34  MPMIAYEVIGLIMLGIAVLMMFQLGVIGKMFYNIAEYLAGYMAFLI----PLSLVFVAVY 89

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           V            M+  +    + +   G L      +L   LI  A++ +  ++   ++
Sbjct: 90  V------------MVKREWPKPKMKVAFGSLFVLIGILLICHLIWAANSILPITSSNVIA 137

Query: 123 RLVFKGNNVENI-------GKVLYTQYAYPLE----------ISGFILLLSMIGAIVLM 164
             +        I       G  +   + Y L           I   ILL   IGAI+L 
Sbjct: 138 ETIRTTKMTGTIWNSYLATGGGILGAFLYALLHVLFDTAGTWIVAIILLS--IGAIILT 194


>gi|281308302|gb|ADA58299.1| NADH dehydrogenase subunit 6 [Buteo polyosoma]
 gi|281308304|gb|ADA58300.1| NADH dehydrogenase subunit 6 [Buteo polyosoma]
          Length = 172

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2   AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            ++V F++ + +       A    +    G+  + +L   +I   +
Sbjct: 62  GMLVVFVYSVCLAADPFPEAWGDWRVLGYGAGMVLVLVVGVIAGGA 107


>gi|28975377|gb|AAO61765.1| NADH dehydrogenase subunit 6 [Busarellus nigricollis]
 gi|28975379|gb|AAO61766.1| NADH dehydrogenase subunit 6 [Busarellus nigricollis
          leucocephalus]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M   F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY
Sbjct: 1  MMVYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89
          +G ++V F++ + +       A    +
Sbjct: 61 LGGMLVVFVYSVCLAADPFPEAWGDWR 87


>gi|327199738|gb|AEA36004.1| NADH dehydrogenase subunit 6 [Cacatua pastinator butleri]
          Length = 172

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++++  V +  +P Y V  L+   V   G  + LG  F++++  +VY+G
Sbjct: 2   AYFVXFLGVSFVLAALAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVSFMSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F++ + +       A    +   +G     +L   L      +
Sbjct: 62  GMLVVFVYSVSLAADPFPQAWGDWR--AVGYAVGFVLVVGLGFAVGGW 107


>gi|311788502|gb|ADQ12884.1| NADH dehydrogenase subunit 6 [Protosalanx chinensis]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLAGLVLGLVAVASNPAPYFAALGLVVAAGAGCGILVGHGGPFLSLVLFLIYLGGMLVV 66

Query: 70  FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +  +   E    R   G++  +F+ ++          +
Sbjct: 67  FAYSAALAAEPYPETWGDRSVLGYVVGYFLAVVVMAGWFWGGWY 110


>gi|29569566|gb|AAO85251.1| NADH dehydrogenase subunit 6 [Buteo albicaudatus hypospodius]
 gi|281308244|gb|ADA58270.1| NADH dehydrogenase subunit 6 [Buteo albicaudatus]
          Length = 172

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|71658118|ref|YP_272013.1| NADH dehydrogenase subunit 6 [Plesiobatis daviesi]
 gi|49066393|gb|AAT49288.1| NADH dehydrogenase subunit 6 [Plesiobatis daviesi]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 42/110 (38%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +     ++    V +  +P ++   L+ +     GL +  G+ F+++I  ++Y+G ++V 
Sbjct: 7   ILMVSFVLGLVAVASNPSPYFAALGLVISAGVGCGLLVGFGSSFLSLILFLIYLGGMMVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           F +   +       +            + GIL    +    ++      G
Sbjct: 67  FAYTAALAAEPYPESWGDWSVLAYVVGYFGILFGVGLNFVVDWSWGGWVG 116


>gi|55583356|ref|YP_138264.1| NADH dehydrogenase subunit 6 [Bombina bombina]
 gi|46981591|gb|AAT07845.1| NADH dehydrogenase subunit 6 [Bombina bombina]
          Length = 169

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
            F    ++    V +  +P Y+   L+ A      + +  GA F++++  ++Y+G ++V 
Sbjct: 7   FFMVGLVLGLVAVASNPSPYYAALGLVVAAGAGCCVIVSFGASFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           F +   +       AEP  +     S    +L   L+V    +MV
Sbjct: 67  FAYSAALT------AEPYPEAWGSWSVVGYVLVYLLLVTGGCYMV 105


>gi|284794727|ref|YP_003412081.1| NADH dehydrogenase subunit 6 [Raiamas senegalensis]
 gi|284507281|dbj|BAI67707.1| NADH dehydrogenase subunit-6 [Raiamas senegalensis]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 1/112 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            +  F  +A++   + V     P +    L+       G+ +  G  F+++I  ++Y+G 
Sbjct: 3   LYSCFLLVALVMGLIAVASNPTPYFGALGLVMVAGVGCGILVSCGGPFLSLILFLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           ++V F +   +       A   +      S ++  ++   +V    +   S 
Sbjct: 63  MLVVFAYSTALAAESYPEAWGSRSVAMYASMYLFGVSMVALVFWGGWYEGSW 114


>gi|219524130|ref|YP_002456280.1| NADH dehydrogenase subunit 6 [Manouria impressa]
 gi|149193526|gb|ABR21226.1| NADH dehydrogenase subunit 6 [Manouria impressa]
          Length = 174

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y VFSL+    +  G+ + +G  FV+++  +VY+G +
Sbjct: 4   FMFLFGFCFVFWMIGVSCSSSPYYGVFSLVLGAASGCGVLVGMGGSFVSLVLFLVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +V F +   +      V             ++ ++   ++   S +
Sbjct: 64  LVIFAYSSALAAEPYPVGWGGLDAVIYWLCYMIVVMWFMMADYSWW 109


>gi|165932463|ref|YP_001650747.1| NADH dehydrogenase subunit 6 [Macroramphosus scolopax]
 gi|154758874|dbj|BAF75014.1| NADH dehydrogenase subunit 6 [Macroramphosus scolopax]
          Length = 173

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V F +   +   
Sbjct: 17  IAVASNPSPYFAALGLVIVAGVGCGILVWHGGPFLSLILFLIYLGGMLVVFAYSAAL--- 73

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
               AEP  +     S  + ++   + V   + M +    E S +   
Sbjct: 74  ---AAEPYPESWGSRSVAVSMVGYMVGVTLISGMFWGGWHEGSWVPVD 118


>gi|91702463|gb|ABE48036.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702575|gb|ABE48140.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065611|gb|ABY79937.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065835|gb|ABY80145.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066003|gb|ABY80301.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066171|gb|ABY80457.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493742|gb|ACE02373.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493756|gb|ACE02386.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493770|gb|ACE02399.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493784|gb|ACE02412.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493798|gb|ACE02425.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493980|gb|ACE02594.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493994|gb|ACE02607.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494106|gb|ACE02711.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494134|gb|ACE02737.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494246|gb|ACE02841.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|17737329|ref|NP_008482.4|ND6_15041 NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|108561311|ref|YP_626739.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|167716876|ref|YP_001686722.1| NADH dehydrogenase subunit 6 [Canis lupus chanco]
 gi|207849013|ref|YP_002221511.1| NADH dehydrogenase subunit 6 [Canis lupus laniger]
 gi|14917021|sp|Q9ZZ56|NU6M_CANFA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|122064631|sp|Q1HK79|NU6M_CANLU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|7534310|gb|AAD04774.2| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301817|gb|AAT74137.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301831|gb|AAT74150.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301845|gb|AAT74163.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301859|gb|AAT74176.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301873|gb|AAT74189.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301887|gb|AAT74202.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301901|gb|AAT74215.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301915|gb|AAT74228.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301929|gb|AAT74241.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301943|gb|AAT74254.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301957|gb|AAT74267.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301971|gb|AAT74280.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301985|gb|AAT74293.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50301999|gb|AAT74306.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50302013|gb|AAT74319.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50302027|gb|AAT74332.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50302041|gb|AAT74345.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50302055|gb|AAT74358.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|50302069|gb|AAT74371.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|51872065|gb|AAU12158.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702407|gb|ABE47984.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702421|gb|ABE47997.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702435|gb|ABE48010.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702449|gb|ABE48023.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702477|gb|ABE48049.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702491|gb|ABE48062.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702505|gb|ABE48075.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702519|gb|ABE48088.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702533|gb|ABE48101.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702547|gb|ABE48114.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702561|gb|ABE48127.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702589|gb|ABE48153.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|91702617|gb|ABE48179.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|91702631|gb|ABE48192.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|91702645|gb|ABE48205.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|91702659|gb|ABE48218.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|91702673|gb|ABE48231.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|166065527|gb|ABY79859.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065541|gb|ABY79872.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065555|gb|ABY79885.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065569|gb|ABY79898.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065583|gb|ABY79911.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065597|gb|ABY79924.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065625|gb|ABY79950.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065639|gb|ABY79963.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065653|gb|ABY79976.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065667|gb|ABY79989.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065681|gb|ABY80002.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065695|gb|ABY80015.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065723|gb|ABY80041.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065737|gb|ABY80054.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065751|gb|ABY80067.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065779|gb|ABY80093.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065793|gb|ABY80106.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065807|gb|ABY80119.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065821|gb|ABY80132.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065849|gb|ABY80158.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065863|gb|ABY80171.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065877|gb|ABY80184.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065891|gb|ABY80197.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065905|gb|ABY80210.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065919|gb|ABY80223.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065933|gb|ABY80236.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065947|gb|ABY80249.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065961|gb|ABY80262.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065975|gb|ABY80275.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166065989|gb|ABY80288.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066017|gb|ABY80314.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066031|gb|ABY80327.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066045|gb|ABY80340.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066059|gb|ABY80353.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066073|gb|ABY80366.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066087|gb|ABY80379.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066101|gb|ABY80392.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066115|gb|ABY80405.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066129|gb|ABY80418.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066143|gb|ABY80431.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066157|gb|ABY80444.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066185|gb|ABY80470.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066199|gb|ABY80483.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066213|gb|ABY80496.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066227|gb|ABY80509.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066241|gb|ABY80522.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066255|gb|ABY80535.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066269|gb|ABY80548.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066283|gb|ABY80561.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066297|gb|ABY80574.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066311|gb|ABY80587.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066325|gb|ABY80600.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066339|gb|ABY80613.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066353|gb|ABY80626.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066367|gb|ABY80639.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066381|gb|ABY80652.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066395|gb|ABY80665.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|166066409|gb|ABY80678.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|167030929|gb|ABZ05796.1| NADH dehydrogenase subunit 6 [Canis lupus chanco]
 gi|189492230|gb|ACE00969.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492244|gb|ACE00982.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492258|gb|ACE00995.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492272|gb|ACE01008.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492286|gb|ACE01021.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492300|gb|ACE01034.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492314|gb|ACE01047.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492328|gb|ACE01060.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492342|gb|ACE01073.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492356|gb|ACE01086.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492370|gb|ACE01099.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492384|gb|ACE01112.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492412|gb|ACE01138.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492426|gb|ACE01151.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492440|gb|ACE01164.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492454|gb|ACE01177.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492468|gb|ACE01190.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492482|gb|ACE01203.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492496|gb|ACE01216.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492510|gb|ACE01229.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492524|gb|ACE01242.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492538|gb|ACE01255.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492552|gb|ACE01268.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492566|gb|ACE01281.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492580|gb|ACE01294.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492608|gb|ACE01320.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492622|gb|ACE01333.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492650|gb|ACE01359.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492678|gb|ACE01385.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492692|gb|ACE01398.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492706|gb|ACE01411.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492720|gb|ACE01424.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492734|gb|ACE01437.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492748|gb|ACE01450.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492762|gb|ACE01463.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492776|gb|ACE01476.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492804|gb|ACE01502.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492818|gb|ACE01515.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492832|gb|ACE01528.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492846|gb|ACE01541.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492860|gb|ACE01554.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492874|gb|ACE01567.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492888|gb|ACE01580.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492902|gb|ACE01593.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492916|gb|ACE01606.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492930|gb|ACE01619.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492944|gb|ACE01632.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492972|gb|ACE01658.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189492986|gb|ACE01671.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493000|gb|ACE01684.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493014|gb|ACE01697.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493028|gb|ACE01710.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493042|gb|ACE01723.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493056|gb|ACE01736.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493070|gb|ACE01749.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493084|gb|ACE01762.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493098|gb|ACE01775.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493112|gb|ACE01788.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493126|gb|ACE01801.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493140|gb|ACE01814.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493154|gb|ACE01827.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493168|gb|ACE01840.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493182|gb|ACE01853.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493196|gb|ACE01866.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493210|gb|ACE01879.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493224|gb|ACE01892.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493238|gb|ACE01905.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493252|gb|ACE01918.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493266|gb|ACE01931.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493280|gb|ACE01944.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493294|gb|ACE01957.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493308|gb|ACE01970.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493322|gb|ACE01983.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493336|gb|ACE01996.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493350|gb|ACE02009.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493364|gb|ACE02022.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493378|gb|ACE02035.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493392|gb|ACE02048.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493406|gb|ACE02061.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493420|gb|ACE02074.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493434|gb|ACE02087.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493448|gb|ACE02100.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493462|gb|ACE02113.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493476|gb|ACE02126.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493490|gb|ACE02139.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493504|gb|ACE02152.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493518|gb|ACE02165.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493532|gb|ACE02178.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493546|gb|ACE02191.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493560|gb|ACE02204.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493574|gb|ACE02217.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493588|gb|ACE02230.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493602|gb|ACE02243.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493616|gb|ACE02256.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493630|gb|ACE02269.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493658|gb|ACE02295.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493672|gb|ACE02308.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493686|gb|ACE02321.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493700|gb|ACE02334.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493714|gb|ACE02347.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493728|gb|ACE02360.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493812|gb|ACE02438.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493826|gb|ACE02451.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493840|gb|ACE02464.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493854|gb|ACE02477.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493896|gb|ACE02516.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493910|gb|ACE02529.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493924|gb|ACE02542.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493938|gb|ACE02555.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493952|gb|ACE02568.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493966|gb|ACE02581.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494008|gb|ACE02620.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494022|gb|ACE02633.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494036|gb|ACE02646.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494064|gb|ACE02672.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494078|gb|ACE02685.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494092|gb|ACE02698.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494120|gb|ACE02724.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494148|gb|ACE02750.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494162|gb|ACE02763.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494176|gb|ACE02776.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494190|gb|ACE02789.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494204|gb|ACE02802.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494218|gb|ACE02815.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494232|gb|ACE02828.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494260|gb|ACE02854.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494274|gb|ACE02867.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494288|gb|ACE02880.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494302|gb|ACE02893.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189494316|gb|ACE02906.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|189494330|gb|ACE02919.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|197941130|gb|ACH78266.1| NADH dehydrogenase subunit 6 [Canis lupus laniger]
 gi|225543872|gb|ACN91385.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|225543886|gb|ACN91398.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|225543900|gb|ACN91411.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|225543914|gb|ACN91424.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|225543928|gb|ACN91437.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|225543942|gb|ACN91450.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|225543956|gb|ACN91463.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|254028465|gb|ACT53161.1| NADH dehydrogenase subunit 6 [Canis lupus chanco]
 gi|294679617|gb|ADF29621.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|294774359|dbj|BAJ05642.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|294774373|dbj|BAJ05655.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|294774387|dbj|BAJ05668.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|294774401|dbj|BAJ05681.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|294774415|dbj|BAJ05694.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|294774443|dbj|BAJ05720.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|294774457|dbj|BAJ05733.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|294774471|dbj|BAJ05746.1| NADH dehydrogenase subunit 6 [Canis lupus]
 gi|294774485|dbj|BAJ05759.1| NADH dehydrogenase subunit 6 [Canis lupus]
          Length = 175

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|189492958|gb|ACE01645.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGVGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|71658035|ref|YP_271975.1| NADH dehydrogenase subunit 6 [Alectura lathami]
 gi|38048816|gb|AAR10289.1| NADH dehydrogenase subunit 6 [Alectura lathami]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++ S  V +  +P Y V  L+   V   G  L LG  FV+++  +VY+G
Sbjct: 2  TYFVLFLGVSFMLGSLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGGSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVALAADPFPGAWGDWR 86


>gi|5835329|ref|NP_008327.1|ND6_11652 NADH dehydrogenase subunit 6 [Polypterus ornatipinnis]
 gi|2499296|sp|Q95919|NU6M_POLOR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1663761|gb|AAC60316.1| NADH dehydrogenase subunit 6 [Polypterus ornatipinnis]
          Length = 167

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS M +IS   V +  +P ++ F L+       G+ +  G  F++MI  ++Y+G 
Sbjct: 2   VLMVVFSVMFLISLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMILFLIYLGG 61

Query: 66  VIVFFLF--IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           ++V F +   +                  L   F+ I+A    V
Sbjct: 62  MLVVFAYSPALAAEPYPNAWGSWEVFSYVLVYMFLVIVAWVAFV 105


>gi|153128017|ref|YP_001382283.1| NADH dehydrogenase subunit 6 [Canis lupus lupus]
 gi|151416774|emb|CAM98648.1| NADH6 protein [Canis lupus lupus]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|91702701|gb|ABE48257.1| NADH dehydrogenase subunit 6 [Canis latrans]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|83309083|ref|YP_423960.1| NADH dehydrogenase subunit 6 [Lipotes vexillifer]
 gi|55274428|gb|AAV49122.1| NADH dehydrogenase subunit 6 [Lipotes vexillifer]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++S   V +  +PIY    LI       G+    G  F+ ++  +VY
Sbjct: 1   MMMYVAFIMSIIFMVSLVGVSSKPSPIYGGLGLIVGGAMGCGIVFSFGGSFLGLMMFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M       A     +  LG F +G++   L V
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEA-WISNKVVLGGFLLGLVVEILAV 104


>gi|42632199|ref|NP_976189.1| NADH dehydrogenase subunit 6 [Sebastes schlegelii]
 gi|38640818|gb|AAR26019.1| NADH dehydrogenase subunit 6 [Sebastes schlegelii]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF    ++    V +  +P ++   L+       G+ +  G  F +++  ++Y+G
Sbjct: 2   TYIMSLFLIGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVAHGGPFKSLLLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +    G     +L   + V  ++ + +    E S +
Sbjct: 62  GMLVVFAYSAAL------AAEPYPESWVSGPVVGDMLMYLVGVGVASSVFWGGWYESSWV 115

Query: 125 VFK 127
              
Sbjct: 116 PAD 118


>gi|299829045|ref|YP_003734935.1| NADH dehydrogenase subunit 6 [Callorhinchus milii]
 gi|298110885|gb|ADI57838.1| NADH dehydrogenase subunit 6 [Callorhinchus milii]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 6   LFFYLFSFMA-IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++F +   M  II    V +  +P ++ F L+ +     GL    G  F++ +  ++Y+G
Sbjct: 2   IYFVMLMLMCFIIGLVGVASNPSPYFAAFGLVMSAAIGCGLLASHGTSFLSFVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F++   +       AEP  +        + ++   L V    +  F     +  +
Sbjct: 62  GMLVVFVYSAALT------AEPYPESWLDWPVLVNVMMYLLGVGVGVYYFFGEWNMMHWM 115

Query: 125 VFKGNN 130
                N
Sbjct: 116 GVDELN 121


>gi|239997535|gb|ACS37051.1| NADH dehydrogenase subunit 6 [Dermophis mexicanus]
          Length = 164

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 50/126 (39%), Gaps = 1/126 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F  F    ++    V +  +P ++   L+ A  +   + + LG  F++++  +VY
Sbjct: 1   MSYVIFLGF-LGMMLGMIGVASNPSPYFAALGLVIAASSGCWILVGLGMTFLSLVLFLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   M       A       +    +  +L         + ++ + +  + 
Sbjct: 60  LGGMLVVFAYSAAMAAEPFPEAWGNLYVIYYMFVYGCVLLIVWGFVNIDVVLSAGDFSMI 119

Query: 123 RLVFKG 128
           R  + G
Sbjct: 120 RCDWGG 125


>gi|221145546|ref|YP_002519818.1| NADH dehydrogenase subunit 6 [Thylacinus cynocephalus]
 gi|218135487|gb|ACK57337.1| NADH dehydrogenase subunit 6 [Thylacinus cynocephalus]
 gi|218135501|gb|ACK57350.1| NADH dehydrogenase subunit 6 [Thylacinus cynocephalus]
          Length = 166

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 43/98 (43%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +L S M ++      +  +P+Y   SL+ +     G+ + LG  F+ +I  ++Y
Sbjct: 1   MKMMVIFLLSLMLVMGFVAFASKPSPVYGGLSLVISGGIGCGIVVSLGNVFLGLIVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI 100
           +G ++V F +   M   +   +       F    F  +
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNLVAFSMLVFAFL 98


>gi|119360789|ref|YP_913807.1| NADH dehydrogenase subunit 6 [Phoxinus percnurus mantschuricus]
 gi|119225567|dbj|BAF41907.1| NADH dehydrogenase subunit 6 [Phoxinus perenurus mantschuricus]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 8   FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F   S + +I   + V     P ++   L+ A     G+ +  G  F++++  ++Y+G +
Sbjct: 4   FVFLSLLVLIVGLIAVASNPTPYFAALGLVVAAGVGCGVLVSCGGSFLSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   +       AEP  +     S    +L   + V     M +    E S ++ 
Sbjct: 64  LVVFAYSAAL------AAEPFPEAWGSRSVIGYVLVYLVGVTLMAGMFWGEWYEGSWVII 117

Query: 127 KG 128
            G
Sbjct: 118 DG 119


>gi|14010691|ref|NP_114332.1| NADH dehydrogenase subunit 6 [Cebus albifrons]
 gi|13940267|emb|CAC37917.1| NADH subunit 6 [Cebus albifrons]
          Length = 177

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L S M +       +  +PIY    L+F+      L L LG  ++ ++  ++Y
Sbjct: 1   MMYILF-LLSIMLVTGFVGFSSKPSPIYGGLVLVFSGAVGCVLMLYLGGSYMGLMVFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V F +   M  +D            LG   +G+    ++V    
Sbjct: 60  LGGMMVVFGYTAAM-AVDEYPETWVSSVDILGMLVLGLAMEVVVVLLLG 107


>gi|189494050|gb|ACE02659.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|29569556|gb|AAO85246.1| NADH dehydrogenase subunit 6 [Buteo platypterus platypterus]
 gi|281308298|gb|ADA58297.1| NADH dehydrogenase subunit 6 [Buteo platypterus]
 gi|281308300|gb|ADA58298.1| NADH dehydrogenase subunit 6 [Buteo platypterus]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGMPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|317134188|ref|YP_004123440.1| NADH dehydrogenase subunit 6 [Pseudopungtungia tenuicorpus]
 gi|223951254|gb|ACN29549.1| NADH dehydrogenase subunit 6 [Pseudopungtungia tenuicorpus]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGVLIGCGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +   +       A   R   G++  + IG++ A  +     +
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLVYLIGVILAAGLFWGGWY 110


>gi|37596477|gb|AAQ94999.1| NADH dehydrogenase subunit 6 [Vidua interjecta]
 gi|37596481|gb|AAQ95001.1| NADH dehydrogenase subunit 6 [Vidua orientalis aucupum]
          Length = 159

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +     
Sbjct: 19  VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAA--D 76

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
              E     G +G  F   L   + +  S  +    +
Sbjct: 77  PYPETWTDWGVVGYGFGMGLVVMVGLVMSGVLGLLTD 113


>gi|81230417|ref|YP_398784.1| NADH dehydrogenase subunit 6 [Nisaetus nipalensis]
 gi|77999949|dbj|BAE46844.1| NADH dehydrogenase subunit 6 [Spizaetus nipalensis]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGAGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|270155269|gb|ACZ62668.1| NADH dehydrogenase subunit 6 [Eleginops maclovinus]
          Length = 174

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 43/103 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F YLF    ++   +V    +P ++ F L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   AYFVYLFMVGLVLGMAVVAVNLSPYFAAFGLVVVAGMGCGVIISFGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F +   +       +             +G++    I+
Sbjct: 62  GMLVVFAYSAALAAEPFPESFGTTGAVLYFMGLVGVVGVFAIL 104


>gi|29569572|gb|AAO85254.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus harrisi]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVFLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|29569564|gb|AAO85250.1| NADH dehydrogenase subunit 6 [Buteo albicaudatus colonus]
 gi|76009066|gb|ABA38995.1| NADH dehydrogenase subunit 6 [Buteo albicaudatus]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|25006448|dbj|BAC23943.1| NADH dehydrogenase subunit 6 [Polypterus ornatipinnis]
          Length = 167

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 47/110 (42%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS M +IS   V +  +P ++ F L+       G+ +  G  F++MI  ++Y+G 
Sbjct: 2   VLMVVFSVMFLISLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           ++V F +   +       A    +       ++ ++    +    +  +F
Sbjct: 62  MLVVFAYSAALAAEPYPNAWGSWEVFSYVLVYMFLVIVAWVAFVGDMELF 111


>gi|222837025|ref|YP_002586866.1| NADH dehydrogenase subunit 6 [Gyrinomimus sp. UW 113191]
 gi|222051570|dbj|BAH15257.1| NADH dehydrogenase subunit 6 [Gyrinomimus sp. UW 113191]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 9   YLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           YL SF+ +   +    V +  +P Y+   L+       GL +  G  F++++  ++Y+G 
Sbjct: 3   YLMSFLLVGFVVGLIAVASNPSPFYAALGLVVVAGLGCGLLVGHGGPFLSLVLFLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           ++V F +   +       AEP  +     S F       + V  + +       E+  + 
Sbjct: 63  MLVVFAYSAAL------AAEPFPESWGSWSVFGQAFIYFMGVVLAFWYFRGGWSEVCWVP 116

Query: 126 FK 127
             
Sbjct: 117 VD 118


>gi|213136079|gb|ACJ43633.1| NADH dehydrogenase subunit 6 [Echinotriton chinhaiensis]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          +L   M ++    V +  +P ++ F L+ A V    L    GA F++++  +VY+G ++V
Sbjct: 6  FLSMIMMLVGLIAVASNPSPYFAAFGLVLASVGGCCLLADFGASFLSLVLFLVYLGGMMV 65

Query: 69 FFLFIIMMLDIDIEVAEPRKK 89
           F +   +       A     
Sbjct: 66 VFAYSASLAAEPYPEAWGSWS 86


>gi|75055386|sp|Q5ULB0|NU6M_BOSMU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|54654338|gb|AAV37053.1| NADH dehydrogenase subunit 6 [Bos grunniens]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F   +L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WLLNKAVLGAFITALLMEFFMV 104


>gi|281308358|gb|ADA58327.1| NADH dehydrogenase subunit 6 [Leucopternis melanops]
 gi|281308360|gb|ADA58328.1| NADH dehydrogenase subunit 6 [Leucopternis melanops]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|281308346|gb|ADA58321.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|149173388|ref|ZP_01852018.1| thiol:disulfide interchange protein dsbD (precursor) [Planctomyces
           maris DSM 8797]
 gi|148847570|gb|EDL61903.1| thiol:disulfide interchange protein dsbD (precursor) [Planctomyces
           maris DSM 8797]
          Length = 779

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 23  VTVRNPIYSVFSLIFAFVNAAGLFLLLGA---------EFVAMITLVVYVGAVIVFFLFI 73
           +   N  YS   ++  F+  A L +  G          +F  ++  +VY   + +  +F 
Sbjct: 411 IFALNIFYS-LGVLTVFLGLASLAVFAGLGWGGLFQSTKFNIIMACIVYAMGLSMLGVFE 469

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           I +  +    A  ++K G  G+F  GILA  L    S 
Sbjct: 470 IPVPGMVGSAASGQQKEGLTGAFLTGILATLLATPCSG 507


>gi|327492721|ref|YP_004347611.1| NADH dehydrogenase subunit 6 [Auriglobus modestus]
 gi|327392348|dbj|BAK09793.1| NADH dehydrogenase subunit 6 [Auriglobus modestus]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 44/113 (38%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +L   LF    ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TLVMSLFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F +   +               FL   + G++    ++       +S 
Sbjct: 62  GMLVVFAYSAALAAEPYPETLGSWPVLFLVVAYCGVVVLSYVMLLGWEGDYSW 114


>gi|189492398|gb|ACE01125.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
 gi|189493882|gb|ACE02503.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|166065709|gb|ABY80028.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|194277576|ref|YP_492579.2| NADH dehydrogenase subunit 6 [Coreoleuciscus splendidus]
 gi|190888464|gb|ABC56378.2| NADH dehydrogenase subunit 6 [Coreoleuciscus splendidus]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFMLLMAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGILVGSGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   +       AEP  +     S F  ++   + V  +  M +    E S
Sbjct: 60  LGGMLVVFAYSAAL------AAEPFPEAWGSRSVFGYVMIYLVGVVLTAGMSWGGWYEGS 113

Query: 123 RLVFKG 128
            ++  G
Sbjct: 114 WVMIDG 119


>gi|194442196|ref|YP_002038856.1| NADH dehydrogenase subunit 6 [Tomistoma schlegelii]
 gi|81295137|emb|CAH18641.1| NADH dehydrogenase subunit 6 [Tomistoma schlegelii]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F+  S + ++   LV       Y V SL+FA +++ GL  + G  F+ M+ L++Y+G 
Sbjct: 3   MTFFALSSLMLVGVVLVSAGATTHYGVISLLFAALSSGGLLAVGGGSFMPMVVLLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAE 104
           ++V F F +   D    E       +G +G    G++   
Sbjct: 63  LLVVFTFCVGFTDDKYCEFWGVGASKGLVGVCGAGLMVVG 102


>gi|126792912|gb|ABO27312.1| NADH dehydrogenase subunit 6 [Cyanoliseus patagonus]
          Length = 170

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
                    +++S LV +  +P Y V  L+F  +   G  + LG  FV+++  +VY+G +
Sbjct: 4   LLVFLGVSFVLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGTSFVSLVLFMVYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +V F++ + +       A           + +G++ A   +    +
Sbjct: 64  LVVFVYSVSLAADPFPQAWGG---WHAMGYVLGLVPAGAGLVVWGW 106


>gi|223468823|gb|ACM89976.1| NADH dehydrogenase subunit 6 [Hieraaetus fasciatus]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGAGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|254500159|ref|ZP_05112310.1| NADH-Ubiquinone/plastoquinone (complex I), domain protein
           [Labrenzia alexandrii DFL-11]
 gi|222436230|gb|EEE42909.1| NADH-Ubiquinone/plastoquinone (complex I), domain protein
           [Labrenzia alexandrii DFL-11]
          Length = 794

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 2/138 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + + + +    +A++    V+  +  + ++ SL       A +FLL GA  +A   L+
Sbjct: 602 MPIYTFYEWSIFLIAVLGLISVLVAKTRLTAIVSLGIQGFAVALIFLLFGAPDLAFTQLM 661

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           V   +V++  L  +M                 +       +   L +          +  
Sbjct: 662 VETLSVVILAL--VMTRLNLSPRDHRNGVSTLITGAISVSVGLGLGLTLMAITQQPFDRR 719

Query: 121 LSRLVFKGNNVENIGKVL 138
           LS    + +N    G+ +
Sbjct: 720 LSDFFTEYSNSIAYGRNI 737


>gi|19481572|gb|AAL88858.1|AF407125_1 NADH dehydrogenase subunit 6 [Prunella montanella]
          Length = 159

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|16357386|ref|NP_443695.1| NADH dehydrogenase subunit 6 [Helicolenus hilgendorfi]
 gi|16267296|dbj|BAB70415.1| NADH dehydrogenase subunit 6 [Helicolenus hilgendorfi]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF    ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TYIMSLFLIGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGYGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +    G     ++   + V  ++ + +    E S +
Sbjct: 62  GMLVVFAYSAAL------AAEPYPESWVSGPVVGDMVMYLVGVGVASSVFWGGWYESSWV 115

Query: 125 VFK 127
              
Sbjct: 116 PAD 118


>gi|301353460|ref|YP_003795682.1| NADH dehydrogenase subunit 6 [Miichthys miiuy]
 gi|300069604|gb|ADJ66707.1| NADH dehydrogenase subunit 6 [Miichthys miiuy]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 47/118 (39%), Gaps = 3/118 (2%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF F  ++    V +  +P +    L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TYIMSLFLFGLVLGVIAVASNPSPYFGALGLVVVAGLGCGVLVGHGGHFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
            ++V F++   +       +   +    +  + +  +A  ++V    +  +      S
Sbjct: 62  GMLVVFVYSTALAAEPYPESWGSRS---VMVYVLAYVAGVIMVSGLFWEGWHGAFWAS 116


>gi|239997661|gb|ACS37168.1| NADH dehydrogenase subunit 6 [Schistometopum thomense]
          Length = 170

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 49/121 (40%)

Query: 14  MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73
             ++S   V +  +P ++ F L+   +    + ++ G  F++++  ++Y+G ++V F + 
Sbjct: 11  FLVVSMIGVASNPSPYFAAFGLVIGALAGCWVLVVFGMSFLSLVLFMIYLGGMLVVFAYS 70

Query: 74  IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133
             ++     +A   +        +  +L   L      + V  ++     + +    V  
Sbjct: 71  AALVAEPYPMAWGSRLVINYMMVYCVVLWVSLFYVDDCWDVMISDSSFFAVRYDWGGVSM 130

Query: 134 I 134
           +
Sbjct: 131 L 131


>gi|224476050|ref|YP_002633656.1| monovalent cation/H+ antiporter subunit A [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222420657|emb|CAL27471.1| putative Na+/H+ antiporter subunit [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 805

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   M + S+F++V  R+ ++S+  L     + A  F+   A  +A+   VV   +    
Sbjct: 627 IIVIMILASAFMIVFARSRLFSIIMLSAVGYSMAIFFIFFNAPDLALTQFVVETISTA-- 684

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            LF++    +         K   +G+  I      ++V     + +  +   S   +   
Sbjct: 685 -LFLLCFYHLPNLNRYNESKSFKVGNALIAA-GVGIVVTVLGLIAYGNKHFESIASYYKE 742

Query: 130 NVENIGK 136
           NV ++  
Sbjct: 743 NVHSLAH 749


>gi|14141876|ref|NP_115362.1|ND6_15666 NADH dehydrogenase subunit 6 [Casuarius casuarius]
 gi|14039595|gb|AAK53331.1|AF338713_13 NADH dehydrogenase subunit VI [Casuarius casuarius]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      I+ +  V +  +P Y V  L+   V   G  L LG  F++++  +VY+G
Sbjct: 2   TYFIFFLGLCFILGALAVASNPSPYYGVLGLVVGSVVGCGWLLSLGVSFISLVLFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
            ++V F++ + +        E       LG      L   + V   +FM
Sbjct: 62  GMLVVFVYSVSLAA--DPFPETWGDWRVLGYGVGLALVVFVGVVMGDFM 108


>gi|29569570|gb|AAO85253.1| NADH dehydrogenase subunit 6 [Buteo leucorrhous]
 gi|281308370|gb|ADA58333.1| NADH dehydrogenase subunit 6 [Buteo leucorrhous]
 gi|281308372|gb|ADA58334.1| NADH dehydrogenase subunit 6 [Buteo leucorrhous]
 gi|281308374|gb|ADA58335.1| NADH dehydrogenase subunit 6 [Buteo leucorrhous]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|76009074|gb|ABA38999.1| NADH dehydrogenase subunit 6 [Leucopternis semiplumbeus]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|325126689|ref|YP_004285839.1| NADH dehydrogenase subunit 6 [Nymphicus hollandicus]
 gi|304365599|gb|ADM26402.1| NADH dehydrogenase subunit 6 [Nymphicus hollandicus]
          Length = 171

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
               + ++++  V +  +P Y V  L+   +   G  + LG  FV+++  +VY+G ++V 
Sbjct: 7   FMGIVFVLAALAVASNPSPYYGVVGLVLGSIAGCGWLVSLGVSFVSLVLFMVYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILA 102
           F++ + +       A   R   G++    + I+ 
Sbjct: 67  FVYSVSLAADPYPQAWGDRHVMGYIVGLGLVIVL 100


>gi|322422839|ref|YP_004222623.1| NADH dehydrogenase subunit 6 [Heterocephalus glaber]
 gi|316891383|gb|ADU57108.1| NADH dehydrogenase subunit 6 [Heterocephalus glaber]
          Length = 176

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    +Y  S + +I         +PIY   SLI +      + L  G  F+ ++  +V+
Sbjct: 1   MTLNVYYFLSILFVIGCVGFSVKPSPIYGGLSLIVSGALGCVIILGYGGSFLGLMVFLVF 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +   M       +       +    F   +   L     N+
Sbjct: 61  LGGMMVVFGYTTAMSMEQYPESWVSNVAVWSVMLFSLFMEGLLSYVWLNY 110


>gi|313768472|ref|YP_004062151.1| NADH dehydrogenase subunit 6 [Cuora amboinensis]
 gi|225194544|gb|ACN81799.1| NADH dehydrogenase subunit 6 [Cuora amboinensis]
          Length = 174

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +L  F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4   FMFLLGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   ++     V     +  F G +++ I+   ++       ++S EG  +  V 
Sbjct: 64  LVIFAYSSALMAESFPVGWVSLEGVFYGLYYLFII---VVFMQMGCHLWSIEGIGADTVD 120

Query: 127 KGN 129
            G 
Sbjct: 121 AGG 123


>gi|25057740|ref|NP_739969.1| NADH dehydrogenase subunit 6 [Allocyttus niger]
 gi|25005941|dbj|BAC23565.1| NADH dehydrogenase subunit 6 [Allocyttus niger]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P Y+   L+       G+ ++ G  F++++  ++Y+G ++V F +   +       
Sbjct: 21  SNPSPYYAALGLVLVAGAGCGVLVVCGGGFLSLVLFLIYLGGMLVVFAYSAAL------A 74

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           AEP  +     + F  +L   ++V  +++       E S +  
Sbjct: 75  AEPYPEAWGGRAVFGYVLIYIMLVLGASWWAGGGWYEGSWVPV 117


>gi|207559824|gb|ACI24430.1| NADH dehydrogenase subunit 6 [Budorcas taxicolor]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+M  +F  + S + ++      +  +PIY    LI +     G+ L  G  F+ ++  +
Sbjct: 1   MIMYIVF--ILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNYGGSFLGLMVFL 58

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           VY+G ++V F +   M             +  LG+F  G+L    ++
Sbjct: 59  VYLGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFFMI 104


>gi|226463970|ref|YP_002734927.1| NADH dehydrogenase subunit 6 [Chamaeleo zeylanicus]
 gi|124055076|gb|ABM89693.1| NADH dehydrogenase subunit 6 [Chamaeleo zeylanicus]
          Length = 171

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
            V +  +P +   SL  A V  A +   L + F++++ ++VY+G ++V F++ + M    
Sbjct: 15  GVASNPSPYFGGVSLALASVFGACIMAGLSSTFISLVLMLVYLGGMLVVFIYSVAMSSDV 74

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
              A   +        F+G L         
Sbjct: 75  YPEAWGNRSVFLYVVGFLGYLFCLWWYIGG 104


>gi|76009044|gb|ABA38984.1| NADH dehydrogenase subunit 6 [Buteo albicaudatus]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|29570681|ref|NP_818902.1| NADH dehydrogenase subunit 6 [Chalceus macrolepidotus]
 gi|29501120|dbj|BAC67479.1| NADH dehydrogenase subunit 6 [Chalceus macrolepidotus]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F LF    ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G +
Sbjct: 4   IFCLFLLGLVVGLVAVASNPAPYFAALGLVVAAGVGCGILVGHGGSFLSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   +       AEP  +     S    +LA  L+V  + +       E S  V 
Sbjct: 64  LVVFAYSAAL------AAEPFPESWGDRSVIGYVLAYLLVVGVAGWWAQGGWYEGSWFVV 117

Query: 127 KG 128
             
Sbjct: 118 DS 119


>gi|281308348|gb|ADA58322.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|28493607|ref|NP_787768.1| DNA recombination protein RmuC-like protein [Tropheryma whipplei
           str. Twist]
 gi|28476649|gb|AAO44737.1| DNA recombination protein RmuC-like protein [Tropheryma whipplei
           str. Twist]
          Length = 482

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 8/44 (18%)

Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRR------DIKRQDISKQL 180
            +   ++  +LL+++IGA+++  R           K Q++S Q+
Sbjct: 42  IWLFILT--VLLVALIGAVLISERKTSSCNRLLSKKNQELSDQV 83


>gi|319948605|ref|ZP_08022730.1| putative monovalent cation/H+ antiporter subunit A [Dietzia
           cinnamea P4]
 gi|319437735|gb|EFV92730.1| putative monovalent cation/H+ antiporter subunit A [Dietzia
           cinnamea P4]
          Length = 1014

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           +++     +RN + +V  +       A +F   GA  +A+   +V    ++V F+ ++  
Sbjct: 613 VAAVAATVLRNRLAAVICMSVTGYGVAVIFAFHGAPDLALTQALVET-LMMVAFVLVLRT 671

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +  ++ +++  ++        +G+L   +   A N
Sbjct: 672 MPAEVPLSDGFRRLRAWLGIGVGLLVVIVGAYAIN 706


>gi|296164199|ref|ZP_06846796.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900447|gb|EFG79856.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 187

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
            + +++ + +A+++   V  V +   + ++L  +FV    + L+L   ++ ++T+++ V 
Sbjct: 4   DVVYWICAVIAVLAGAAVFRVTSMARATYALAVSFVAVGVVVLVLAQNYIGVVTILMMVM 63

Query: 65  AVIVFFLFIIMMLDIDIEVAEPR----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            + V  ++++M + ++  +        K+R    +    +L A  I+          +  
Sbjct: 64  EMAVMAVYMVMFMGMNPALMPMSMVHDKRRALAAAVGTFVLLASGILVV--------DWP 115

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL-MLRHRRDIKRQDISKQ 179
             R     +   ++G+ L       + +   I++ +++  IVL   R R D    D+ ++
Sbjct: 116 SRRGAPPPDVTASLGQELMGPKMLAMAVISPIMVATIVAGIVLAAKRSRYDRFGDDLKQR 175

Query: 180 LESNPD 185
              +P 
Sbjct: 176 PARDPQ 181


>gi|229927536|ref|YP_002887596.1| NADH dehydrogenase subunit 6 [Diceros bicornis]
 gi|229473095|gb|ACQ73070.1| NADH dehydrogenase subunit 6 [Diceros bicornis]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S M +I      +  +PIY    LI +     G+ +  G  F+ ++  +VY
Sbjct: 1   MMTYIGFILSIMFVIGFVGFSSKPSPIYGGLVLIMSGGFGCGIVMSFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +    +  +            LG+F +G+L   +++ 
Sbjct: 61  LGGMLVVFGYT-TAMATEQYPETWVSNATVLGAFVLGVLMEVMLIL 105


>gi|94481707|gb|ABF21419.1| NADH dehydrogenase subunit 6 [Gadus ogac]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            ++    V +  +P Y+   L+        + +  G  F++++  ++Y+G ++V F +  
Sbjct: 12  MVLGVISVASNPSPYYAALGLVLVAXVGCVVLMGHGGSFLSLVLFLIYLGGMLVVFAYCA 71

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
            +       AEP  +     S    +L   L+V  +    +    E   +   
Sbjct: 72  AL------AAEPYPEAWGEWSVLGSVLGYLLLVVGAGSWFWGGWYEGMWVPVD 118


>gi|38349487|ref|NP_941389.1| NADH dehydrogenase subunit 6 [Acinonyx jubatus]
 gi|33340793|gb|AAQ14963.1|AF344830_12 NADH dehydrogenase subunit 6 [Acinonyx jubatus]
 gi|38373510|gb|AAR19078.1| NADH dehydrogenase subunit 6 [Acinonyx jubatus]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTIFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   LG F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGMFITGVLAELLTAC 105


>gi|29569560|gb|AAO85248.1| NADH dehydrogenase subunit 6 [Buteo polyosoma polyosoma]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|220914395|ref|YP_002489704.1| monovalent cation/H+ antiporter subunit A [Arthrobacter
           chlorophenolicus A6]
 gi|219861273|gb|ACL41615.1| NADH dehydrogenase (quinone) [Arthrobacter chlorophenolicus A6]
          Length = 1004

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 3/118 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +     +I +   V       +V  +       A +F L GA  +A+  ++V     I+ 
Sbjct: 619 VAGIGIVIGALAAVKANKRFLAVLMVSVTGYGIALMFALQGAPDLALTQMLV---ETIIL 675

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
             F++ M  +  E+ +    +  +    IG      +V A+ + + +   +   L F 
Sbjct: 676 VAFVLGMRRLPPELRDRTGGKYRVVRVIIGAAFGATMVFAAIYAMGARVAQPISLQFP 733


>gi|190349536|ref|YP_001974771.1| NADH dehydrogenase subunit 6 [Canthigaster rivulata]
 gi|89885702|dbj|BAE86980.1| NADH dehydrogenase subunit 6 [Canthigaster rivulata]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 38/94 (40%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V F +   +       
Sbjct: 21  SNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
                      S + G+++   ++    +  +S 
Sbjct: 81  TLGSWPVLASMSMYFGVVSLVFVLFLGGWGEYSW 114


>gi|304322921|ref|YP_003856759.1| NADH dehydrogenase subunit 6 [Sturnus sericeus]
 gi|302377864|gb|ADL32016.1| NADH dehydrogenase subunit 6 [Sturnus sericeus]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          V +  +P Y V  L+ A V   G  + LG  FV ++ ++VY+G ++V F++ + +
Sbjct: 19 VASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVGLVLVMVYLGGMLVVFVYSVSL 73


>gi|45685689|ref|YP_003724.1| NADH dehydrogenase subunit 6 [Rhyncholestes raphanurus]
 gi|45598239|emb|CAD48224.1| NADH dehydrogenase subunit 6 [Rhyncholestes raphanurus]
          Length = 165

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 41/107 (38%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ L  ++FS +         +  +P+Y   SL+ +      + + L   F+ ++  +VY
Sbjct: 1   MKMLVIFMFSLLLTFGFVAFASKPSPVYGGLSLVASGGLGCAMMVCLEDTFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +   M   +   +            F  ++   L    
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWIGNFVALGMLLFTLVVELILFFML 107


>gi|29569540|gb|AAO85238.1| NADH dehydrogenase subunit 6 [Buteo albigula]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|313666489|ref|YP_004061422.1| NADH dehydrogenase subunit 6 [Protopterus aethiopicus]
 gi|313474916|dbj|BAJ40861.1| NADH dehydrogenase subunit 6 [Protopterus aethiopicus]
          Length = 170

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 33/66 (50%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          S  F++     + S   V +   P ++   L+F      G+ + LG  F++++  ++Y+G
Sbjct: 2  SFLFFIMLVGFLASLVGVASNPAPYFAALGLVFGAGIGCGILIWLGNSFLSLVLFLIYLG 61

Query: 65 AVIVFF 70
           ++V F
Sbjct: 62 GMLVVF 67


>gi|312233406|ref|YP_004021642.1| NADH dehydrogenase subunit 6 [Leggadina lakedownensis]
 gi|161621712|gb|ABX75326.1| NADH dehydrogenase subunit 6 [Leggadina lakedownensis]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +  S  +    +PIY  F L+        + L  G  F+ ++  +VY+G ++V
Sbjct: 6   FILSLVFLTGSLGLALKPSPIYGGFGLVICGCMGCLMVLGFGGSFLGLMVFLVYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   M   +           F     +G+    + V   N+
Sbjct: 66  VFGYTTAMATEEYPETWGSNWLVF-WLLIVGVFMEMVYVYFLNY 108


>gi|189493644|gb|ACE02282.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFVLSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|28975383|gb|AAO61768.1| NADH dehydrogenase subunit 6 [Aquila chrysaetos chrysaetos]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGAGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|5836014|ref|NP_008775.1|ND6_15100 NADH dehydrogenase subunit 6 [Chelonia mydas]
 gi|5103700|dbj|BAA79208.1| NADH dehydrogenase subunit 6 [Chelonia mydas]
          Length = 174

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +LF F  +     V    +P Y V SL+       GL + +G  FV+++  ++Y+G ++V
Sbjct: 6   FLFGFCFVFWMVGVSCNPSPYYGVLSLVLGAAFGCGLLVSMGGSFVSVVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F +   +++    VA   +        ++ ++    ++C   + ++S EG  S  V  G
Sbjct: 66  IFAYSSALVEEPYPVAWGSQGGVVYVVSYVLVVLVYGMMC---YWLWSMEGYGSVTVDAG 122

Query: 129 N 129
            
Sbjct: 123 G 123


>gi|189464675|ref|ZP_03013460.1| hypothetical protein BACINT_01018 [Bacteroides intestinalis DSM
           17393]
 gi|189436949|gb|EDV05934.1| hypothetical protein BACINT_01018 [Bacteroides intestinalis DSM
           17393]
          Length = 1114

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 9/129 (6%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           ++  + +   I   +   T +N +    S +           LLG  F    T  V +G 
Sbjct: 265 VYIIVLAGSIIWGIYESYTEKNKMRMAISFVLTI-------ALLGIPFYGHGTSAVVIGI 317

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +++ FLF    L   ++ +   K R    +    +L   +IV   +          +   
Sbjct: 318 IVIAFLF--FYLSPKMQASMKEKYRISARTLNTSLLCTMMIVIGYSSYAIIVIRSTANTP 375

Query: 126 FKGNNVENI 134
              N+ E+I
Sbjct: 376 MDQNSPEDI 384


>gi|76009028|gb|ABA38976.1| NADH dehydrogenase subunit 6 [Leucopternis melanops]
 gi|76009030|gb|ABA38977.1| NADH dehydrogenase subunit 6 [Leucopternis melanops]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|281308344|gb|ADA58320.1| NADH dehydrogenase subunit 6 [Ictinia plumbea]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|281308336|gb|ADA58316.1| NADH dehydrogenase subunit 6 [Haliaeetus leucocephalus]
 gi|281308338|gb|ADA58317.1| NADH dehydrogenase subunit 6 [Haliaeetus leucocephalus]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|280978501|ref|YP_003345422.1| NADH dehydrogenase subunit 6 [Robinsia catherinae]
 gi|271280132|dbj|BAI53222.1| NADH dehydrogenase subunit 6 [Robinsia catherinae]
 gi|293329593|dbj|BAJ04322.1| NADH dehydrogenase subunit 6 [Robinsia catherinae]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M    F     + ++    V +   P Y    L+ A     G+    G  F++++  ++Y
Sbjct: 1  MSYFVFSFLGMV-VVGFLCVASNPAPYYGALGLVLAAAGGCGILADFGGSFISLVLFLIY 59

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89
          +G ++V F +   +       +     
Sbjct: 60 LGGMLVVFAYSAALAAEPYPESWGNWS 86


>gi|190349522|ref|YP_001974758.1| NADH dehydrogenase subunit 6 [Canthigaster coronata]
 gi|89885688|dbj|BAE86967.1| NADH dehydrogenase subunit 6 [Canthigaster coronata]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 37/94 (39%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V F +   +       
Sbjct: 21  SNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
                        + G+++   ++    +  +S 
Sbjct: 81  TLGSWPVLISMLMYFGVVSLVFVLFLGGWGEYSW 114


>gi|91702603|gb|ABE48166.1| NADH dehydrogenase subunit 6 [Canis lupus]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY  F LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGFVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|296392805|ref|YP_003657689.1| NADH/Ubiquinone/plastoquinone complex I [Segniliparus rotundus DSM
           44985]
 gi|296179952|gb|ADG96858.1| NADH/Ubiquinone/plastoquinone (complex I) [Segniliparus rotundus
           DSM 44985]
          Length = 956

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + + M +I +   V + + I +V +          LF L GA  +A+   +V     +  
Sbjct: 599 VVAVMMMIGAVAAVALTHRIGAVLAAGVTGYGCGVLFSLHGAPDLALTQFLV---ETLTL 655

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            +F +++   D    EP     +       +     +   + F + SA G  +  +    
Sbjct: 656 VVFTLVLRKFDARTNEPIPVFSYAVRIVFSLAVGGALSLLALFAI-SARGAGAPALAGSL 714

Query: 130 NVENIGKV 137
             E + + 
Sbjct: 715 AAEGLARA 722


>gi|157939565|ref|YP_001496989.1| NADH dehydrogenase subunit 6 [Bufo japonicus]
 gi|157908536|dbj|BAF81504.1| NADH dehydrogenase subunit 6 [Bufo japonicus]
          Length = 164

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 40/102 (39%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    I+    V +  +P Y+   L+ +      + +  GA F+ ++  +VY+G ++V 
Sbjct: 4   LFELGLIVGLLAVASNPSPYYAALGLVGSAGAGCLILMDGGASFLCLVLFLVYLGGMMVV 63

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           F +   ++      A            +  +L    +V   +
Sbjct: 64  FAYSAALVAEPYPEAWGGGVVWSYIVVYTVLLGVWWVVGGVS 105


>gi|327492861|ref|YP_004347741.1| NADH dehydrogenase subunit 6 [Tetraodon biocellatus]
 gi|327392404|dbj|BAK09845.1| NADH dehydrogenase subunit 6 [Tetraodon biocellatus]
          Length = 173

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 41/108 (37%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           F +   +                    + GI+    I+    +  +S 
Sbjct: 67  FAYSAALAAEPYPETLGSWPVLASMLMYSGIVVLVFILFLGGWGEYSW 114


>gi|262188109|ref|YP_003276034.1| NADH dehydrogenase subunit 6 [Cuon alpinus]
 gi|261840647|gb|ACY00247.1| NADH dehydrogenase subunit 6 [Cuon alpinus]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY  F LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGFVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105


>gi|219524227|ref|YP_002456370.1| NADH dehydrogenase subunit 6 [Lama guanicoe]
 gi|186968993|gb|ACC97315.1| NADH dehydrogenase subunit 6 [Lama guanicoe]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S M +I      +  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIMFVIGFISFSSKPSPIYGGLGLIVSGGVGCMIVLSYGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G++   L+V 
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKTVLGAFTFGLVVEMLMVV 105


>gi|223976146|ref|YP_002601083.1| NADH dehydrogenase subunit 6 [Lama glama]
 gi|38602639|emb|CAD98824.1| NADH6 protein [Lama pacos]
 gi|223972343|dbj|BAH23378.1| NADH dehydrogenase subunit 6 [Lama glama]
          Length = 175

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S M +I      +  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIMFVIGFISFSSKPSPIYGGLGLIVSGGVGCMIVLSYGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G++   L+V 
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKTVLGAFTFGLVVEMLMVV 105


>gi|28975385|gb|AAO61769.1| NADH dehydrogenase subunit 6 [Aquila chrysaetos chrysaetos]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGAGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|81230459|ref|YP_398797.1| NADH dehydrogenase subunit 6 [Nisaetus alboniger]
 gi|77999963|dbj|BAE46857.1| NADH dehydrogenase subunit 6 [Spizaetus alboniger]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGAGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|281308246|gb|ADA58271.1| NADH dehydrogenase subunit 6 [Buteo albigula]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|45686006|ref|YP_003711.1| NADH dehydrogenase subunit 6 [Caenolestes fuliginosus]
 gi|45597943|emb|CAD48237.1| NADH dehydrogenase subunit 6 [Caenolestes fuliginosus]
          Length = 166

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 43/115 (37%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  ++FS +         +  +P+Y   SL+ +      + + L   F+ ++  +VY
Sbjct: 1   MKMMVIFMFSLLLTFGFVAFASKPSPVYGGLSLVVSGGLGCAIVVSLEDIFLGLVVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M   +   +            F  ++     +      + S 
Sbjct: 61  LGGMLVVFGYTAAMATEEYPESWVGNSVALSMLLFTLVVELVWFLTLGEVELISN 115


>gi|76009050|gb|ABA38987.1| NADH dehydrogenase subunit 6 [Leucopternis polionotus]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|76009054|gb|ABA38989.1| NADH dehydrogenase subunit 6 [Leucopternis polionotus]
          Length = 172

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|294494334|gb|ADE93030.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494340|gb|ADE93034.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494346|gb|ADE93038.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494349|gb|ADE93040.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494352|gb|ADE93042.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494355|gb|ADE93044.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494358|gb|ADE93046.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494361|gb|ADE93048.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494364|gb|ADE93050.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494367|gb|ADE93052.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
          Length = 173

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +  +   E    R    ++  +  G++    +     +
Sbjct: 62  GMLVVFAYSAALAAEPYPETWGSRPVVTYMVVYLAGVVLVSALFWGGWY 110


>gi|29569568|gb|AAO85252.1| NADH dehydrogenase subunit 6 [Buteo magnirostris saturatus]
 gi|76009036|gb|ABA38980.1| NADH dehydrogenase subunit 6 [Buteo magnirostris]
 gi|76009062|gb|ABA38993.1| NADH dehydrogenase subunit 6 [Buteo magnirostris]
 gi|281308290|gb|ADA58293.1| NADH dehydrogenase subunit 6 [Buteo magnirostris]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|21310271|gb|AAM46177.1|AF384097_2 NADH dehydrogenase subunit 6 [Trichosurus caninus]
          Length = 164

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +LFS + I       +  +PIY   SL+ +    + + + LG  F+ ++  +VY+G ++V
Sbjct: 4   FLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLGNTFLGLVVFLVYLGGMLV 63

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   M   +   +       F    F   +       +    V +A
Sbjct: 64  VFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEVEVDTA 112


>gi|25057706|ref|NP_739943.1| NADH dehydrogenase subunit 6 [Parazen pacificus]
 gi|25005913|dbj|BAC23539.1| NADH dehydrogenase subunit 6 [Parazen pacificus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 42/102 (41%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +  +P Y+   L+       G+ ++ G  F++++  ++Y+G ++V F +   
Sbjct: 13  VVGLMGVASNPSPYYAALGLVVVAGAGCGMLMMYGGGFLSLVLFLIYLGGMLVVFAYSAA 72

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +       A   +        ++ ++   L   +  + V S 
Sbjct: 73  LAAEPYPEAWGGRAVLGYVIAYVVLVLGALWCVSGEWYVGSW 114


>gi|327199752|gb|AEA36017.1| NADH dehydrogenase subunit 6 [Calyptorhynchus lathami]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        I+++  V +  +P Y V  L+   +   G  + LG  FV+++  +VY+G
Sbjct: 2  AYFVLFLGVSFILAALAVASNPSPYYGVIGLVLGSIVGCGWLMSLGVSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|229925766|ref|YP_002887583.1| NADH dehydrogenase subunit 6 [Coelodonta antiquitatis]
 gi|229473081|gb|ACQ73057.1| NADH dehydrogenase subunit 6 [Coelodonta antiquitatis]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    L+ +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYMGFILSIVFVISFVGFSSKPSPIYGGLVLVVSGGVGCGIVMSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A        LG+F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEA-WVSNVTVLGAFILGVLMEVVLVL 105


>gi|207559810|gb|ACI24417.1| NADH dehydrogenase subunit 6 [Hemitragus jayakari]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFVTGLLMEFFMV 104


>gi|187250421|ref|YP_001874838.1| NADH dehydrogenase subunit 6 [Naemorhedus swinhoei]
 gi|145967300|gb|ABP99016.1| NADH dehydrogenase subunit 6 [Naemorhedus swinhoei]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSILFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +    +  +  +      +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYT-TAMATEQYLKVWVSSKVVLGTFITGLLMEFFMV 104


>gi|76009024|gb|ABA38974.1| NADH dehydrogenase subunit 6 [Leucopternis occidentalis]
 gi|76009026|gb|ABA38975.1| NADH dehydrogenase subunit 6 [Leucopternis occidentalis]
 gi|281308350|gb|ADA58323.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis]
 gi|281308362|gb|ADA58329.1| NADH dehydrogenase subunit 6 [Leucopternis occidentalis]
 gi|281308364|gb|ADA58330.1| NADH dehydrogenase subunit 6 [Leucopternis occidentalis]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|108793404|ref|YP_636943.1| NADH dehydrogenase subunit 6 [Diretmus argenteus]
 gi|25005829|dbj|BAC23461.1| NADH dehydrogenase subunit 6 [Diretmus argenteus]
          Length = 171

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  +FF       +    +VV   +  Y+   LIF  V  +G     G  F+ +   +
Sbjct: 1   MPMLEIFFV---SGVLFGMLMVVCTSSTYYASLGLIFVCVLGSGAVCCSGGVFLCLALAL 57

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           +Y+  ++V F+F   +        E       L +  +GI         S    +
Sbjct: 58  IYLAGMLVVFIFCTALSPEAYPEDEGSSWNMNLVAM-VGIFWVVTCFFWSWVPSY 111


>gi|332886942|dbj|BAK23054.1| NADH dehydrogenase subunit 6 [Luciosoma bleekeri]
          Length = 178

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 2/121 (1%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++    V +   P +    L+       G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLAALVVGMIAVASNPTPYFGALGLVVVAGVGCGILVGHGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
             +F            E       +G   + +L   LI        +     +    +  
Sbjct: 66  --VFAYSTALAAESYPEAWGSLSVVGYVIMYMLGVGLIAMYLGAGWYEGSWMVMNGTWGF 123

Query: 129 N 129
           +
Sbjct: 124 S 124


>gi|281308260|gb|ADA58278.1| NADH dehydrogenase subunit 6 [Buteo brachyurus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|221143426|ref|YP_002519444.1| NADH dehydrogenase subunit 6 [Rudarius ercodes]
 gi|219806991|dbj|BAH10497.1| NADH dehydrogenase subunit 6 [Rudarius ercodes]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 40/96 (41%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ L  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVLVSGLGCGILLGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPY 78

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
             +   +       +++ ++ A  +     +  FS 
Sbjct: 79  PDSWGSEPVVVSALWYVVMVTAASMFFWGGWYEFSW 114


>gi|109689593|ref|YP_659471.1| NADH dehydrogenase subunit 6 [Presbytis melalophos]
 gi|88174272|gb|ABD39277.1| NADH dehydrogenase subunit 6 [Presbytis melalophos]
          Length = 174

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L S + ++      +  +PIY   +LI + V   G+ L  G  ++ ++  ++Y
Sbjct: 1   MSYILF-LLSVLLVMGFVGFSSKPSPIYGGLALIISGVIGCGIILNYGGTYMGLMMFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +    + I+            LGS  +G+     +V  
Sbjct: 60  LGGMMVVFGYT-TAMAIEEYPEAWVSGFEVLGSLLVGLAMEVGLVLW 105


>gi|330466405|ref|YP_004404148.1| putative monovalent cation/H+ antiporter subunit A [Verrucosispora
           maris AB-18-032]
 gi|328809376|gb|AEB43548.1| putative monovalent cation/H+ antiporter subunit A [Verrucosispora
           maris AB-18-032]
          Length = 946

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 2/111 (1%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
            +  +++ L V  R  + ++  +       A  F+L GA  +A+   +V    + VF L 
Sbjct: 593 VVISVAALLAVGARRRMTAMLLVGMTGYGTAMFFVLYGAPDLALTQFLVETVTIAVFVL- 651

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
            ++          P     +L      I+   +   A           +S 
Sbjct: 652 -VLRRLPKRFSVRPLWSSRWLRRGIGAIVGLTVAGLAVAAATARHARSISE 701


>gi|156544413|ref|XP_001607522.1| PREDICTED: similar to ENSANGP00000021441 [Nasonia vitripennis]
          Length = 397

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 148 ISGFILLLSMIGAIVLMLRHRRD 170
           I+   LLL++IGAI+++L  RR 
Sbjct: 351 IASIFLLLAIIGAILILLGKRRH 373


>gi|119360397|ref|YP_913261.1| NADH dehydrogenase subunit 6 [Rhodeus ocellatus kurumeus]
 gi|119224937|dbj|BAF41322.1| NADH dehydrogenase subunit 6 [Rhodeus ocellatus kurumeus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 42/113 (37%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +L     I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G
Sbjct: 2   TYFVFLLMVALILGLIAVASNPTPYFAALGLVVAAGVGCGILIGSGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F +   +       A   +   F    ++  +          +   S 
Sbjct: 62  GMLVVFAYSAALAAEPFPEAWGSRSVLFYVLVYVVGVVLAAGSLWGGWYEGSW 114


>gi|5835790|ref|NP_008599.1|ND6_15063 NADH dehydrogenase subunit 6 [Carassius auratus]
 gi|51235016|ref|YP_063506.1| NADH dehydrogenase subunit 6 [Carassius auratus x Cyprinus carpio]
 gi|52221022|ref|YP_087042.1| NADH dehydrogenase subunit 6 [Carassius carassius]
 gi|55338290|ref|YP_133904.1| NADH dehydrogenase subunit 6 [Carassius auratus x Cyprinus carpio x
           Carassius cuvieri]
 gi|56912179|ref|YP_173347.1| NADH dehydrogenase subunit 6 [Carassius auratus auratus]
 gi|189095554|ref|YP_001936261.1| NADH dehydrogenase subunit 6 [Carassius cuvieri]
 gi|254033657|ref|YP_003058376.1| NADH dehydrogenase subunit 6 [natural gynogenetic Carassius auratus
           red var.]
 gi|261866649|ref|YP_003264302.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama
           amblycephala triploid hybrid]
 gi|261866677|ref|YP_003264328.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama
           amblycephala pentaploid hybrid]
 gi|296940263|ref|YP_003667945.1| NADH dehydrogenase subunit 6 [Carassius gibelio]
 gi|323481947|ref|YP_004237294.1| NADH dehydrogenase subunit 6 [Carassius auratus ssp. 'Pingxiang']
 gi|6647613|sp|O78689|NU6M_CARAU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|3288698|dbj|BAA31249.1| NADH dehydrogenase subunit 6 [Carassius auratus]
 gi|13516949|dbj|BAB40359.1| NADH dehydrogenase subunit 6 [Carassius cuvieri]
 gi|50657573|gb|AAT79577.1| NADH dehydrogenase subunit 6 [Carassius auratus x Cyprinus carpio]
 gi|51339773|gb|AAU00640.1| NADH dehydrogenase subunit 6 [Carassius carassius]
 gi|54288031|gb|AAV31466.1| NADH dehydrogenase subunit 6 [Carassius auratus x Cyprinus carpio x
           Carassius cuvieri]
 gi|56798140|dbj|BAD82940.1| NADH dehydrogenase subunit 6 [Carassius auratus auratus]
 gi|146142369|gb|ABQ01632.1| NADH dehydrogenase subunit 6 [Carassius auratus]
 gi|251765228|gb|ACT15383.1| NADH dehydrogenase subunit 6 [natural gynogenetic Carassius auratus
           red var.]
 gi|260595485|gb|ACX46740.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama
           amblycephala triploid hybrid]
 gi|260595499|gb|ACX46753.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama
           amblycephala pentaploid hybrid]
 gi|262211494|gb|ACY35582.1| NADH dehydrogenase subunit 6 [Carassius auratus auratus]
 gi|262211508|gb|ACY35595.1| NADH dehydrogenase subunit 6 [Carassius auratus auratus]
 gi|262211522|gb|ACY35608.1| NADH dehydrogenase subunit 6 [Carassius auratus auratus]
 gi|268373362|gb|ACZ03935.1| NADH dehydrogenase subunit 6 [Carassius gibelio]
 gi|269849172|gb|ACZ49740.1| NADH dehydrogenase subunit 6 [Carassius gibelio]
 gi|270301403|gb|ACZ69583.1| NADH dehydrogenase subunit 6 [Carassius auratus x Cyprinus carpio]
 gi|311087983|gb|ADP68061.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama
           amblycephala pentaploid hybrid]
 gi|322506161|gb|ADX01617.1| NADH dehydrogenase subunit 6 [Carassius auratus ssp. 'Pingxiang']
 gi|326320988|gb|ADZ53489.1| NADH dehydrogenase subunit 6 [Carassius gibelio]
 gi|326321002|gb|ADZ53502.1| NADH dehydrogenase subunit 6 [Carassius gibelio]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V  +F            E    R  LG   + +L   L+        +    
Sbjct: 60  LGGMLV--VFAYSAALAAEPYPEAWGSRSVLGYVLVYLLGVGLVAGFFWGGWYEGSW 114


>gi|327493029|ref|YP_004347977.1| NADH dehydrogenase subunit 6 [Arothron manilensis]
 gi|327392516|dbj|BAK09949.1| NADH dehydrogenase subunit 6 [Arothron manilensis]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 42/108 (38%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           F +   +                    ++GI+    ++    F  +S 
Sbjct: 67  FAYSAALAAEPYPETLGSWPVLASMLMYLGIVVLVFVLFLGGFGEYSW 114


>gi|257062395|gb|ACV40213.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  +VY
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|281308342|gb|ADA58319.1| NADH dehydrogenase subunit 6 [Ictinia mississippiensis]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|194214495|ref|XP_001490114.2| PREDICTED: similar to mCG21813 [Equus caballus]
          Length = 1598

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 13/127 (10%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMIT--LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92
           L+ A      +++  G  F       +V+Y    +V FLF + +  +  E    R  + F
Sbjct: 603 LVVAMFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYE-WWRRILKYF 661

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK------VLYTQYAYPL 146
             S  I  +   + +    F  F    + +    K   +E++G        L+T+   P 
Sbjct: 662 WMSVVIYTMLVLIFIYTYQFENFPGLWQ-NMTGLKREKLEDLGLKQFTVAELFTRIFIP- 719

Query: 147 EISGFIL 153
             + F+L
Sbjct: 720 --TSFLL 724


>gi|148543113|ref|YP_001260510.1| NADH dehydrogenase subunit 6 [Ammotragus lervia]
 gi|126742207|gb|ABO27126.1| NADH dehydrogenase subunit 6 [Ammotragus lervia]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFVTGLLMEFFMV 104


>gi|76009048|gb|ABA38986.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis
          costaricensis]
          Length = 171

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPAAWGDWR 86


>gi|291612440|ref|YP_003540908.1| NADH dehydrogenase subunit 6 [Leptodeira septentrionalis
           polysticta]
 gi|189164528|gb|ACD77460.1| NADH dehydrogenase subunit 6 [Leptodeira septentrionalis
           polysticta]
          Length = 166

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           L F +   M + ++ +      P + V +L+          +LLG  FVA++  +VY+G 
Sbjct: 9   LVFVILGVMVLGAAVV------PYHGVVALMGVSFFCCVFMVLLGRTFVALVVYIVYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           +IV F + + +   +++V      + F+   F+ ++           +V+     L  L 
Sbjct: 63  LIVVFSYCVSVEKDEVDVRGVGMLKYFVVFMFVLVVFILWWGVMGGILVYEDWENLVCLE 122

Query: 126 FKGNNV 131
             G +V
Sbjct: 123 VNGGSV 128


>gi|190349508|ref|YP_001974720.1| NADH dehydrogenase subunit 6 [Arothron firmamentum]
 gi|89885674|dbj|BAE86954.1| NADH dehydrogenase subunit 6 [Arothron firmamentum]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 43/108 (39%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           F +   +                    ++GI+A   ++    F  ++ 
Sbjct: 67  FAYSAALAAEPYPETLGSWPVLASMLMYLGIVALVFVLFLGGFGEYTW 114


>gi|119365179|ref|YP_913430.1| NADH dehydrogenase subunit 6 [Barbonymus gonionotus]
 gi|119225119|dbj|BAF41491.1| NADH dehydrogenase subunit 6 [Barbonymus gonionotus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 3/117 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++ F L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFVLLMAL-VVGLVAVASNPTPYFAAFGLVVAAGVGCGVLVGHGGTFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V  +F            E    R  LG   + +L   L+        +    
Sbjct: 60  LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVGLVAVFFWGGWYEGSW 114


>gi|84488690|ref|YP_448892.1| NADH dehydrogenase subunit 6 [Testudo kleinmanni]
 gi|67005717|gb|AAY62509.1| NADH dehydrogenase subunit 6 [Testudo kleinmanni]
          Length = 174

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y VFSL+       G+ + +G  FV++I  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +V F +   +       AEP           I  L   + V       +S  G
Sbjct: 64  LVIFAYSCAL------AAEPYPASWGTLDVVIYGLCYLICVLWLMLTDYSWWG 110


>gi|55378235|ref|YP_136085.1| hypothetical protein rrnAC1453 [Haloarcula marismortui ATCC 43049]
 gi|55230960|gb|AAV46379.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 132

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 94  GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT------------- 140
           GSF  G+ A  L V      +  +    +         +++G  L+              
Sbjct: 11  GSFVAGLAAIALFVVLGAVFMGVSFPAPAGFGEGAAITKSLGAALFDIAPSAIMGEGETA 70

Query: 141 ----QYAYPLEISGFILLLSMIGAIVLMLRH 167
                +    EI   +L+ +++GA++L  R 
Sbjct: 71  VPGEGFLVAFEIIDIVLVAALVGAVMLARRE 101


>gi|325126661|ref|YP_004285813.1| NADH dehydrogenase subunit 6 [Leptotila verreauxi]
 gi|304365585|gb|ADM26389.1| NADH dehydrogenase subunit 6 [Leptotila verreauxi]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 41/84 (48%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + +       
Sbjct: 21  SNPSPYYGVVGLVVASVTGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPE 80

Query: 84  AEPRKKRGFLGSFFIGILAAELIV 107
           A    +    G  F+ ++   ++V
Sbjct: 81  AWGDWRVVGYGLGFVLVVMIGMVV 104


>gi|281308284|gb|ADA58290.1| NADH dehydrogenase subunit 6 [Buteo lagopus]
          Length = 170

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|157778255|gb|ABV70424.1| NADH dehydrogenase subunit 6 [Bos taurus]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F +   M             +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFGYTTAMATEQYPEI-WLSNKVVLGAFVTGLLMEFFMV 104


>gi|163634472|gb|AAO85229.2| NADH dehydrogenase subunit 6 [Buteo auguralis]
 gi|281308262|gb|ADA58279.1| NADH dehydrogenase subunit 6 [Buteo brachyurus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|82395883|gb|ABB72511.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
 gi|327555493|gb|AEB01107.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G 
Sbjct: 3  ITFFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62

Query: 66 VIVFFLFIIMMLD 78
          ++V F F +   D
Sbjct: 63 LLVVFAFCVGFTD 75


>gi|29569558|gb|AAO85247.1| NADH dehydrogenase subunit 6 [Buteo nitidus costaricensis]
 gi|281308294|gb|ADA58295.1| NADH dehydrogenase subunit 6 [Buteo nitidus]
 gi|281308296|gb|ADA58296.1| NADH dehydrogenase subunit 6 [Buteo nitidus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLFLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|328671406|gb|AEB26574.1| NADH dehydrogenase subunit 6 [Nannoperca obscura]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 39/98 (39%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   ++  
Sbjct: 17  IAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSTALVAE 76

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
               +   +        ++ ++    ++    +   S 
Sbjct: 77  PYPESWGSRPVAVYMVMYLAVVTVASVLLGGGWYETSW 114


>gi|71658048|ref|YP_272000.1| NADH dehydrogenase subunit 6 [Cobitis sinensis]
 gi|44887487|gb|AAS48076.1| NADH dehydrogenase subunit 6 [Cobitis sinensis]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F L   + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYLVFLLLMAL-IVGLVAVASNPAPYFAALGLVVAAGVGCGVLISHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +   +       +   R   G++  + +G+       C   +
Sbjct: 60  LGGMLVVFAYSTALAAEPFPESWGDRSVLGYVLVYLVGVGLVMSFFCEGWY 110


>gi|9695371|ref|NP_037593.1| NADH dehydrogenase subunit 6 [Paralichthys olivaceus]
 gi|6683105|dbj|BAA89044.1| NADH dehydrogenase subunit-6 [Paralichthys olivaceus]
 gi|225690868|gb|ACO06118.1| NADH dehydrogenase subunit 6 [Scophthalmus maximus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    L  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFVMCLVLFCLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLIGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +  +   E    R    +  S+ +G++   ++     +
Sbjct: 62  GMLVVFAYSAALAAEPYPETWGSRPVMVYSASYMVGVVLVSVLFWGGWY 110


>gi|296387151|ref|ZP_06876650.1| hypothetical protein PaerPAb_03409 [Pseudomonas aeruginosa PAb1]
          Length = 258

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%)

Query: 34  SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93
            L ++        +++G  F+   T+ V V A+     FI++ + I ++        G+L
Sbjct: 86  YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 144

Query: 94  GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
                  F+G +   L++        +  G           V+ +  +            
Sbjct: 145 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 190

Query: 150 GFILL--LSMIGAIVL 163
             ILL  + +I AI L
Sbjct: 191 -IILLPIVGIIAAIAL 205


>gi|227834044|ref|YP_002835751.1| hypothetical protein cauri_2222 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262183470|ref|ZP_06042891.1| hypothetical protein CaurA7_05709 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227455060|gb|ACP33813.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 438

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 65/167 (38%), Gaps = 11/167 (6%)

Query: 9   YLFSFMAIISSFLV---VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           Y F+  A+ ++ +          + +V  LI  F   + L  L   +F A ++ + Y   
Sbjct: 189 YFFTTEAVAAAGVADPSEFSSGYVAAVLFLIPGFPLFSALIDLARFDFEAGLSRLTYALT 248

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
           VI    F + ++    E+        +   +++   AA  +  +    +F++   +  + 
Sbjct: 249 VITAATFTVALVSWTTELTPEPGIPDYAPVWYLAAAAASFLGISGFAFLFNSSRRMVLVA 308

Query: 126 FKGNNVENIGKVLY-----TQYAYPLEISGFILLLSMIGAIVLMLRH 167
                V N+ +++      T Y      +G  L++ ++GA+     H
Sbjct: 309 AAVGTVANLVRLVLIGVGATAYVGAF--AGG-LIVGLLGAVASTRAH 352


>gi|195947080|dbj|BAG68444.1| NADH dehydrogenase subunit 6 [Varanus rudicollis]
          Length = 179

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            ++   LV +  +P++ V SL+   + A G+ ++ G  F++++  +VY+G +IV F + +
Sbjct: 15  LVVCGLLVGSNPSPVFGVVSLVLLALVACGVLVVCGYSFLSLVLFLVYLGGMIVVFAYSV 74

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
            M       +E + +  F  S     L   L V     M+   +
Sbjct: 75  SM------SSELQPEAWFGWSVLPFFLGGSLGVVFVVVMILGGD 112


>gi|190349424|ref|YP_001974603.1| NADH dehydrogenase subunit 6 [Platichthys stellatus]
 gi|125657056|gb|ABN48623.1| NADH dehydrogenase subunit 6 [Platichthys stellatus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFVMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +     S  +  +     V   + + +    E S +
Sbjct: 62  GMLVVFAYSAAL------AAEPHPESWGSWSVMVYGVVYVAGVVLVSGLFWGGWYESSWV 115

Query: 125 VFK 127
           +  
Sbjct: 116 LVD 118


>gi|52547317|ref|YP_087190.1| NADH dehydrogenase subunit 6 [Monodelphis domestica]
 gi|52345260|emb|CAD48211.1| NADH dehydrogenase subunit 6 [Monodelphis domestica]
          Length = 166

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 2/117 (1%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M M  +F  + S + I       +  +P+Y   SL+ +      + +     F+ ++  +
Sbjct: 1   MTMMMIF--IISLLLIFGFVAFSSKPSPVYGGLSLVASGGLGCVMVVNFEDSFLGLVVFL 58

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VY+G ++V F +   M   +           F    F+ ++         N  V S 
Sbjct: 59  VYLGGMLVVFGYTAAMATEEYPETWVGNILAFCMLLFVLLMEIMWYFIFGNTYVDSN 115


>gi|29569542|gb|AAO85239.1| NADH dehydrogenase subunit 6 [Buteo galapagoensis]
 gi|29569544|gb|AAO85240.1| NADH dehydrogenase subunit 6 [Buteo swainsoni]
 gi|29569546|gb|AAO85241.1| NADH dehydrogenase subunit 6 [Buteo swainsoni]
 gi|73666523|gb|AAZ79934.1| NADH dehydrogenase subunit 6 [Buteo swainsoni X Buteo lagopus]
 gi|281308270|gb|ADA58283.1| NADH dehydrogenase subunit 6 [Buteo galapagoensis]
 gi|281308272|gb|ADA58284.1| NADH dehydrogenase subunit 6 [Buteo galapagoensis]
 gi|281308322|gb|ADA58309.1| NADH dehydrogenase subunit 6 [Buteo swainsoni]
 gi|281308324|gb|ADA58310.1| NADH dehydrogenase subunit 6 [Buteo swainsoni]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|5836042|ref|NP_008801.1|ND6_15103 NADH dehydrogenase subunit 6 [Hippopotamus amphibius]
 gi|6647640|sp|Q9ZZY0|NU6M_HIPAM RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|4127875|emb|CAA09439.1| NADH6 [Hippopotamus amphibius]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  +VY
Sbjct: 1   MMTYVVFILSIVFVIGLIGSPSKPSPIYGGLGLIVSGGAGCGMVLNFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G++   L V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFLLGLMMEFLAVL 105


>gi|327492623|ref|YP_004347520.1| NADH dehydrogenase subunit 6 [Sphoeroides parvus]
 gi|327392306|dbj|BAK09754.1| NADH dehydrogenase subunit 6 [Sphoeroides parvus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 43/108 (39%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLVLGLVAVASNPSPYFGALSLVVVAGFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           F +   +       A            + G++A   ++    +  +S 
Sbjct: 67  FAYSAALAAEPYPEALGSWPVLVSMLMYSGVVALVFVMFFGGWGEYSW 114


>gi|226304992|ref|YP_002764950.1| Na(+)/H(+) antiporter subunit A/B [Rhodococcus erythropolis PR4]
 gi|226184107|dbj|BAH32211.1| putative Na(+)/H(+) antiporter subunit A/B [Rhodococcus
           erythropolis PR4]
          Length = 945

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 13/169 (7%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +  + M I ++     +RN + SV  +         LF L GA  +A+   +V     + 
Sbjct: 599 FTIALMMISAAIAATLMRNRLASVILVGLTGYGCGVLFALHGAPDLALTQFLV---ETLT 655

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-----LSR 123
             +F++++     EV E +          + +     +   + F   +         L  
Sbjct: 656 LVIFVLVLRKFPAEVDESKAIGFKWPRAALAVAVGITVTTIAAFATNARNTRPIYELLPD 715

Query: 124 LVFKGNNVENIGKVLYTQ---YAYPLEISGFILLLSMIGAIVLMLRHRR 169
             +   N +N+  VL      +    EIS  +LL++  G   L+ R+RR
Sbjct: 716 AAYDLGNGKNVVNVLLVDIRAWDTLGEIS--VLLVAATGVASLVFRNRR 762


>gi|327555479|gb|AEB01094.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G 
Sbjct: 3  ITFFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62

Query: 66 VIVFFLFIIMMLD 78
          ++V F F +   D
Sbjct: 63 LLVVFAFCVGFTD 75


>gi|280978124|ref|YP_003345072.1| NADH dehydrogenase subunit 6 [Coloconger cadenati]
 gi|271280668|dbj|BAI53443.1| NADH dehydrogenase subunit 6 [Coloconger cadenati]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +LF FM ++    V +   P ++   L+ A     G+    G  FV+++  ++Y+G
Sbjct: 2   TYFIFLFMFMLVLGIIGVASNPAPYFAALGLVLAAGGGCGILAGYGGSFVSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            ++V  +F            E       LG      +   + V    
Sbjct: 62  GMLV--VFAYSAALAAEPYPEGWGDWAVLGRVVGCFMLCFIGVFFGG 106


>gi|158420581|ref|YP_001527644.1| NADH dehydrogenase subunit 6 [Taenia saginata]
 gi|55793082|gb|AAV65592.1| NADH dehydrogenase subunit 6 [Taenia saginata]
          Length = 150

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV+++L    F  + + S    ++     Y V  ++ A ++    +L+ G  + +++  +
Sbjct: 1   MVLEALVTSYFFVLLLFS----LSSHCVYYCVLLVVNALISCLICYLVYGFSWYSLVFCL 56

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVG V + F+F+ +    D      +     +   F+  L    + C    + FS+
Sbjct: 57  VYVGGVYILFIFVSVFNPNDSFPIYHKVGESNVVLCFVVGLLCVCLFCGLVNVEFSS 113


>gi|229918857|ref|YP_002887518.1| NADH dehydrogenase subunit 6 [Istiophorus platypterus]
 gi|229619821|dbj|BAH58303.1| NADH dehydrogenase subunit 6 [Istiophorus platypterus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 40/113 (35%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL     ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFIMYLILLSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F +   +           +        ++  +     +    +   S 
Sbjct: 62  GMLVVFAYSAALAAEPYPETWGSRPVVAYMVVYMVGVVLVSGLFWGGWYESSW 114


>gi|229918843|ref|YP_002887505.1| NADH dehydrogenase subunit 6 [Makaira indica]
 gi|229919627|ref|YP_002887544.1| NADH dehydrogenase subunit 6 [Tetrapturus audax]
 gi|229922371|ref|YP_002887557.1| NADH dehydrogenase subunit 6 [Tetrapturus angustirostris]
 gi|229619807|dbj|BAH58290.1| NADH dehydrogenase subunit 6 [Makaira indica]
 gi|229619892|dbj|BAH58251.1| NADH dehydrogenase subunit 6 [Tetrapturus audax]
 gi|229619906|dbj|BAH58264.1| NADH dehydrogenase subunit 6 [Tetrapturus angustirostris]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 40/113 (35%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL     ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFIMYLILLSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F +   +           +        ++  +     +    +   S 
Sbjct: 62  GMLVVFAYSAALAAEPYPETWGSRPVVMYMVVYMVGVVLVSGLFWGGWYESSW 114


>gi|226463827|ref|YP_002727934.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon]
 gi|124055174|gb|ABM89784.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon]
          Length = 169

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 41/92 (44%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
            V +  +P +   SL  A V  AG+   L + FV+++ ++VY+G ++V F++ + M    
Sbjct: 15  GVASNPSPYFGGVSLALASVFGAGVVAGLSSTFVSLVLMLVYLGGMLVVFVYSVAMSSDM 74

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
              A   +      + F+G L          +
Sbjct: 75  YPEAWGNRSVFLYVAGFLGYLFCLWWYMEWKW 106


>gi|119360551|ref|YP_913456.1| NADH dehydrogenase subunit 6 [Labeo senegalensis]
 gi|119225147|dbj|BAF41517.1| NADH dehydrogenase subunit 6 [Labeo senegalensis]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V  +F            E    R  LG   + +L   L+        +    
Sbjct: 60  LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVSLVAGLFWGGWYEGSW 114


>gi|8573075|ref|NP_059467.1| NADH dehydrogenase subunit 6 [Paragonimus westermani]
 gi|8132793|gb|AAF73395.1|AF219379_9 NADH dehydrogenase subunit 6 [Paragonimus westermani]
          Length = 150

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F    F ++I    V      +Y +  L  A   +  L+ +LG  +  ++  +VYVG 
Sbjct: 3  VVFLSLYFSSLIGFSFV--SHPVVYCILLLTGALGISGYLYTVLGLSWYLVLFCLVYVGG 60

Query: 66 VIVFFLFI 73
          + V F+F+
Sbjct: 61 ICVLFIFV 68


>gi|15987287|ref|NP_387497.1|ND6_15796 NADH dehydrogenase subunit 6 [Buteo buteo]
 gi|15963589|gb|AAL11093.1|AF380305_13 NADH dehydrogenase subunit 6 [Buteo buteo]
 gi|163634470|gb|AAO85224.2| NADH dehydrogenase subunit 6 [Buteo japonicus japonicus]
 gi|163634486|gb|AAO61761.2| NADH dehydrogenase subunit 6 [Buteo hemilasius]
 gi|281308268|gb|ADA58282.1| NADH dehydrogenase subunit 6 [Buteo buteo]
 gi|281308274|gb|ADA58285.1| NADH dehydrogenase subunit 6 [Buteo hemilasius]
 gi|281308276|gb|ADA58286.1| NADH dehydrogenase subunit 6 [Buteo hemilasius]
 gi|281308316|gb|ADA58306.1| NADH dehydrogenase subunit 6 [Buteo rufinus]
 gi|281308380|gb|ADA58338.1| NADH dehydrogenase subunit 6 [Buteo rufinus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|2459599|gb|AAB71751.1| NADH dehydrogenase subunit 6 [Cacomantis flabelliformis]
          Length = 148

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%)

Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          +    V +  +P Y V  L+ A V   G  L LG  FV+++  ++Y+G ++V F++ + +
Sbjct: 2  LGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMIYLGGMLVVFVYSVSL 61

Query: 77 LDIDIEVA 84
                 A
Sbjct: 62 AADPFPEA 69


>gi|238550549|gb|ACR44403.1| NADH dehydrogenase subunit 6 [Arborophila gingica]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   ++Y+G
Sbjct: 2  TYFVLFLGAGFVLGILAVASNPSPYYGVVGLVLASVMGCGWLVNLGVSFVSLALFMIYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR 86


>gi|289183145|ref|YP_003457133.1| NADH dehydrogenase subunit 6 [Sladenia gardineri]
 gi|288908719|dbj|BAI76979.1| NADH dehydrogenase subunit 6 [Sladenia gardineri]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 41/110 (37%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    I+   +V +  +P +    L+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLVGVILGMVVVASNPSPFFGALGLVVVAGLGCGVLMGHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           F +   +           +   F  S ++  +          +   S + 
Sbjct: 67  FAYSAALAAEPFPEGLGSRPVAFSVSVYLAGVGLASSFFWGGWYEGSWQS 116


>gi|284178621|ref|YP_003406753.1| NADH dehydrogenase subunit 6 [Larimichthys polyactis]
 gi|220961444|gb|ACL93173.1| NADH dehydrogenase subunit 6 [Larimichthys polyactis]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVVVAGLGCGILVGHGGHFLSLILFLIYLGGMLVVFAYSAAL----- 73

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
             AEP  +     S  + IL   + V   + + +    E S +   
Sbjct: 74  -AAEPYPESWGSRSVMVYILVYVVGVVMVSGLFWGGWYETSWVPVD 118


>gi|215511504|gb|ACJ67951.1| NADH dehydrogenase subunit 6 [Fundulus grandis]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 2/115 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  ++F LFS +  +++  V +  +P ++   L+       G+ +  G  F+++I  ++Y
Sbjct: 2   MYMMYFLLFSLVLGLAA--VASNPSPYFAALGLVVVAGIGCGVLIWHGGGFLSLILFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +                L   ++  +     + +S+    S 
Sbjct: 60  LGGMLVVFAYSAALAAEPYPEGWGSWPVLGLMLGYLLGVGGVGTLFSSSMYDGSW 114


>gi|187250387|ref|YP_001874812.1| NADH dehydrogenase subunit 6 [Uncia uncia]
 gi|145558806|gb|ABP73330.1| NADH dehydrogenase subunit 6 [Uncia uncia]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+M  +F  + S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  +
Sbjct: 1   MMMYIVF--ILSTIFVVSFVSFSSKPSPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFL 58

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +Y+G ++V F +   M       A    K   LG+F  G+LA  L  C
Sbjct: 59  IYLGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGAFITGVLAELLTAC 105


>gi|119360340|ref|YP_913508.1| NADH dehydrogenase subunit 6 [Gymnocypris przewalskii]
 gi|119225203|dbj|BAF41569.1| NADH dehydrogenase subunit 6 [Gymnocypris przewalskii]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  L F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYLMFVLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVSHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V  +F            E    R  LG   I ++   L         +    
Sbjct: 60  LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVVIYLVMTSLAAGLLWGGWYEGSW 114


>gi|28975367|gb|AAO61760.1| NADH dehydrogenase subunit 6 [Buteo refectus]
 gi|281308264|gb|ADA58280.1| NADH dehydrogenase subunit 6 [Buteo refectus]
 gi|281308266|gb|ADA58281.1| NADH dehydrogenase subunit 6 [Buteo refectus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|26284407|gb|AAN84908.1|AF460846_12 NADH subunit 6 [Galeopterus variegatus]
          Length = 174

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 44/104 (42%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +L S + ++      +  +PIY    L+ +     G+ + LG  F+ ++  +VY+G ++V
Sbjct: 6   FLLSVIFVVGFVGFSSKPSPIYGGVGLLVSGGVGCGIVVSLGGSFLGLMVFLVYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   M   +   A          S    ++   +++   N+
Sbjct: 66  VFGYTTAMAIEEYPEAWGSNVVVLGASLLGLVMELLVVLWMVNY 109


>gi|325126702|ref|YP_004285851.1| NADH dehydrogenase subunit 6 [Labeo bata]
 gi|325053254|dbj|BAJ83456.1| NADH dehydrogenase subunit 6 [Labeo bata]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V  +F            E    R  LG   + +L   L+        +    
Sbjct: 60  LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVGLVAGFFWGGWYEGSW 114


>gi|222616447|gb|EEE52579.1| hypothetical protein OsJ_34868 [Oryza sativa Japonica Group]
          Length = 864

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 24/172 (13%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSL--IFAFVNAAGLFLLLGA---EFVAMIT 58
           Q   F     + +IS      +     S   +    +   +  LF L+G+   E +   +
Sbjct: 146 QEFGFVRIGLVYLISGLGGSLM-----SALFIRSSISVGASGALFGLIGSMLSELITNWS 200

Query: 59  LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-- 116
           L     A ++  +F+I ++++ + +         +G    G L   ++     F   +  
Sbjct: 201 LYANKVAALLTLVFVI-VVNLALGILPRVDNFAHIGGLISGFLLGFVMFIRPQFAWINQR 259

Query: 117 --AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             A G+    V + +            Y      +  +L++    AIVL+LR
Sbjct: 260 RVAPGQQPAPVKRKHKTYQ--------YILW-LAAAIMLIVGFTVAIVLLLR 302


>gi|270267548|ref|YP_003331234.1| NADH dehydrogenase subunit 6 [Eothenomys chinensis]
 gi|215882409|gb|ACJ70831.1| NADH dehydrogenase subunit 6 [Eothenomys chinensis]
          Length = 174

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             Y  S +  +         +PIY    LI +  +     L  G  F+ ++  ++Y+G +
Sbjct: 4   LIYFLSLLICMGCLGTSLKPSPIYGGLCLIISGCSGCLAVLGFGGSFLGLMVFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +V F +   M       AE   +        +G+L   + +      V
Sbjct: 64  LVVFGYTTAM------SAEEYPETWVSSWLVLGVLVMSVFMEVGMLFV 105


>gi|325282538|ref|YP_004255079.1| NADH dehydrogenase (quinone) [Deinococcus proteolyticus MRP]
 gi|324314347|gb|ADY25462.1| NADH dehydrogenase (quinone) [Deinococcus proteolyticus MRP]
          Length = 827

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 1/106 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           S    L   + +  +  V   RN + +V  +      ++  FL   A  +A+  +++   
Sbjct: 585 SFSLILIVTLLVAGAIGVSLSRNRLTAVVLMGLTGFGSSAAFLAFRAPDLALTQMIIETV 644

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            V + FL     +     +A  R +        +      +    S
Sbjct: 645 TV-ILFLLAFRYMPGIRALARTRTQYLVDLGIALSAGVGIMAYLLS 689


>gi|161824345|gb|ABX79726.1| NADH dehydrogenase subunit 6 [Mus musculus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + ++    +    + IY    LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FVLSSLFLVGCLGLALKPSLIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   M   +            LG   +G++    ++C  N+
Sbjct: 66  VFGYTTAMATEEYPETWG-SNWLILGFLVLGVIMEVFLICVLNY 108


>gi|160902053|ref|YP_001567634.1| hypothetical protein Pmob_0577 [Petrotoga mobilis SJ95]
 gi|160359697|gb|ABX31311.1| hypothetical protein Pmob_0577 [Petrotoga mobilis SJ95]
          Length = 258

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          S+ F   S + +  S  +++ ++ +  +       V  + LF LL A  VA + + +  G
Sbjct: 4  SIIFLFLSLIVL--SLYILSQKSYVNVIIGYGVFSVATSVLFFLLNAPDVAFVEITI--G 59

Query: 65 AVIVFFLFIIMM 76
          A  V F+++I +
Sbjct: 60 AAFVIFIYLIAI 71


>gi|52551373|ref|YP_089627.1| NADH dehydrogenase subunit 6 [Uraeotyphlus cf. oxyurus MW-212]
 gi|42406160|gb|AAS13755.1| NADH dehydrogenase subunit 6 [Uraeotyphlus cf. oxyurus MW-212]
          Length = 165

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 41/95 (43%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F  ++    V +  +P ++ F L+ +      + + +   F++++  ++Y+G ++V F +
Sbjct: 10  FGLVLGLVGVASNPSPYFAAFGLVISSAAGCLILVTVELSFLSLVFFLIYLGGMLVVFAY 69

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
              M       A       ++  +   ++   L++
Sbjct: 70  SAAMAAEPYPEAWGGVSIFYVMGYICVLVLGSLMI 104


>gi|16357344|ref|NP_443643.1| NADH dehydrogenase subunit 6 [Antigonia capros]
 gi|16267223|dbj|BAB70350.1| NADH dehydrogenase subunit 6 [Antigonia capros]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 11/122 (9%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            I     V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +  
Sbjct: 12  LIFGLIAVASNPSPYFAALGLVIVAGLGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSA 71

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
            +       +                +A  +++  +  ++ S         F    VE +
Sbjct: 72  ALAAEPYPESWGSWP-----------VAMSMLIYLAGVVLVSGLFWGGWYEFSWTTVEEL 120

Query: 135 GK 136
           G+
Sbjct: 121 GE 122


>gi|71402426|ref|XP_804128.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70866932|gb|EAN82277.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 898

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 30/156 (19%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + S+ F+    + +  +   ++ R P  SV        N  G+ L L   F+ ++     
Sbjct: 668 LSSVVFFFALTVFLRKTLGTISCRAPWRSVSY--TTMFNLDGIMLTLFGYFMLVLL---- 721

Query: 63  VGAVIVFFLFIIMMLDIDI---------------EVAEPRKKRGFLGSFFIGILAAELIV 107
                  F F ++                     E    R     +  + IGI  A  + 
Sbjct: 722 -----ATFAFALVYSRWHTREEIEAHVQEFQALPEFWTFRNTTKVVAVYVIGIGQALCLG 776

Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143
                 ++     +       +    IG VLY  + 
Sbjct: 777 YLMKLWIYRTSNVVWNWEASPS----IGAVLYMTFL 808


>gi|317097355|ref|YP_004123555.1| NADH dehydrogenase subunit 6 [Cynoglossus abbreviatus]
 gi|254763724|gb|ACT80254.1| NADH dehydrogenase subunit 6 [Cynoglossus abbreviatus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 39/96 (40%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   Y    + ++    VV   +P +   +L+     A  + ++ G  F+A++  +VY+G
Sbjct: 2   TFILYTALLVMVVGLGAVVAHPSPYFGSLTLVVVSGAACVVLIMYGGTFLALVMFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI 100
            ++V F +   +                  + ++GI
Sbjct: 62  GMLVVFAYTTALAADSFPYTLTYGDVMLYWALYMGI 97


>gi|288903190|ref|YP_003433801.1| NADH dehydrogenase subunit 6 [Sebastiscus marmoratus]
 gi|284468532|gb|ADB90326.1| NADH dehydrogenase subunit 6 [Sebastiscus marmoratus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF    ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TYIMSLFLIGLVLGLVAVASNPSPYFAALRLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +    G     ++   + V  ++ + +    E S +
Sbjct: 62  GMLVVFAYSAAL------AAEPYPESWVSGPVVGDMVMYLVGVGVASSVFWGGWYESSWV 115

Query: 125 VFK 127
              
Sbjct: 116 PAD 118


>gi|164454838|dbj|BAF96963.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F + S + ++      +  +P Y   SLI +     G+ +  G  F+ ++  +VY
Sbjct: 1   MMYIVF-VMSVLYVVGFIGFSSKPSPDYGGMSLIVSGGLGCGIIMSSGGSFLGLVVFLVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V F + I M   +                   ++   +IV    
Sbjct: 60  LGGMMVVFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFT 108


>gi|119360245|ref|YP_913313.1| NADH dehydrogenase subunit 6 [Notemigonus crysoleucas]
 gi|119224993|dbj|BAF41374.1| NADH dehydrogenase subunit-6 [Notemigonus crysoleucas]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 1/115 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFAFLLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGVLVSCGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +       A   +        ++  +     V    +   S 
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLIYLAGVVLMAGVFWGGWYEGSW 114


>gi|29569548|gb|AAO85242.1| NADH dehydrogenase subunit 6 [Buteo albonotatus albonotatus]
 gi|281308248|gb|ADA58272.1| NADH dehydrogenase subunit 6 [Buteo albonotatus]
 gi|281308250|gb|ADA58273.1| NADH dehydrogenase subunit 6 [Buteo albonotatus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|12667717|ref|NP_075406.1| NADH dehydrogenase subunit 6 [Thryonomys swinderianus]
 gi|12657508|emb|CAC27810.1| NADH dehydrogenase subunit 6 [Thryonomys swinderianus]
          Length = 170

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y  S   +I         +P+Y   +LI +      + L  G  F+ ++  +VY+G ++V
Sbjct: 7   YFLSVAFVICYIGFSVKPSPVYGGLALIVSGGVGCFIILSYGGSFLGLMVFLVYLGGMMV 66

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            F +   M       +       +  +F   ++   +I 
Sbjct: 67  VFGYTTAMATDQYPDSWGSNVIIWSATFMGLLMELLMIY 105


>gi|29569524|gb|AAO85230.1| NADH dehydrogenase subunit 6 [Buteo lagopus kamtschatkensis]
 gi|281308282|gb|ADA58289.1| NADH dehydrogenase subunit 6 [Buteo lagopus]
 gi|281308310|gb|ADA58303.1| NADH dehydrogenase subunit 6 [Buteo regalis]
 gi|281308312|gb|ADA58304.1| NADH dehydrogenase subunit 6 [Buteo regalis]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|238550536|gb|ACR44391.1| NADH dehydrogenase subunit 6 [Arborophila rufogularis]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 36/80 (45%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  FV+++  ++Y+G ++V 
Sbjct: 7  FLGVGFVLGILAVASNPSPYYGVVGLVLASVMGCGWLVNLGVSFVSLVLFMIYLGGMLVV 66

Query: 70 FLFIIMMLDIDIEVAEPRKK 89
          F++ + +       A    +
Sbjct: 67 FVYSVSLAADPYPEAWGSWR 86


>gi|281308318|gb|ADA58307.1| NADH dehydrogenase subunit 6 [Buteo solitarius]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|260150977|ref|YP_003208293.1| NADH dehydrogenase subunit 6 [Lucinella divaricata]
 gi|116257523|gb|ABJ91106.1| NADH dehydrogenase subunit 6 [Lucinella divaricata]
          Length = 160

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          +L   + +    L++   +PI      I      A    +  + +V  +   VYVGA++V
Sbjct: 2  WLVVGVLLGILSLIIYSEHPISVGLWFIMYSFMVAIWVGVEWSSYVGYLMFFVYVGALLV 61

Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99
           F  ++M+    +    P      LG+   G
Sbjct: 62 MFCMVVMLTPNPVFRVVPFVGLFPLGNSLAG 92


>gi|16356951|ref|NP_443617.1| NADH dehydrogenase subunit 6 [Myripristis berndti]
 gi|16267178|dbj|BAB70311.1| NADH dehydrogenase subunit 6 [Myripristis berndti]
          Length = 169

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-IIMMLDID 80
           V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   +  +  
Sbjct: 15  VASNPSPYFAALGLVAVAGLGCGVLVGYGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPH 74

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            E    R   G+   + IG+ AA        +
Sbjct: 75  PESWGSRSVAGYFLLYLIGVFAASSYFWGGWY 106


>gi|296236327|ref|XP_002763279.1| PREDICTED: tetraspanin-15-like [Callithrix jacchus]
          Length = 304

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 28  PIYS-VFSLIFAFVNAAGLFL--------LLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78
            IYS VF LI   V + G++          L + F+A + +++ +G V+    FI ++  
Sbjct: 25  IIYSTVFWLIGVLVLSVGIYAEVERQKYKTLESAFLAPVIILILLGVVMCMVSFIGVLAS 84

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +   +   +     LG   I  L   ++   
Sbjct: 85  LRDNLFLLQAFMYILGICLIMELIGGVMALI 115


>gi|255563681|ref|XP_002522842.1| GDP-mannose transporter, putative [Ricinus communis]
 gi|223537926|gb|EEF39540.1| GDP-mannose transporter, putative [Ricinus communis]
          Length = 485

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 46  FLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           F+L   +F A I+L+VY   + V  + ++  L I     EP   R       + ++   +
Sbjct: 98  FVLSSYDFNAGISLMVYQNFISVIIVSVLSFLGI--ISTEPLTWRLIKVWLPVNVIFVGM 155

Query: 106 IVCASNFMVFSAEGELSRLVFKGNNVENIGKV-LYTQY 142
           +V +   + +     ++ L    N +  +G++ L++++
Sbjct: 156 LVTSMFSLKYINVAMVTVLKNVTNVITALGEMYLFSKH 193


>gi|16117422|ref|NP_395464.1| NADH dehydrogenase subunit 6 [Heterodontus francisci]
 gi|16030062|emb|CAC84223.1| NADH subunit 6 [Heterodontus francisci]
          Length = 169

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++     ++    V +  +P ++   L+ A     GL +  G  F++++  ++Y+G ++V
Sbjct: 2   FVMMIGLVLGLMAVASNPSPYFAALGLVVASGVGCGLLVGYGGSFMSLVLFLIYLGGMLV 61

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
            F++   +         P     +    ++ I    LI   S F+ 
Sbjct: 62  VFVYTAAL----AAEPYPESWGSWSVLLYVSIYLTGLIFVGSYFVT 103


>gi|29570625|ref|NP_818811.1| NADH dehydrogenase subunit 6 [Chanos chanos]
 gi|29501162|dbj|BAC67518.1| NADH dehydrogenase subunit 6 [Chanos chanos]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF F  ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLFGLVVGLVAVASNPAPYFAALGLVVAAGVGCGVLIGHGGLFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
           F +   +       AEP  +     S    +L   + V A   + +    E S +V  G
Sbjct: 67  FAYSAAL------AAEPFPESWVDRSVIWYVLVYLIGVVAVAGLFWGGWYESSWVVVDG 119


>gi|1589126|prf||2210305M NADH dehydrogenase:SUBUNIT=6
          Length = 781

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
            M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++
Sbjct: 606 EMMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGTGCGIVLNFGGSFLGLMVFLI 665

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           Y+G ++V F +   M       A    K   L  F  G+LA  L  C
Sbjct: 666 YLGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 711


>gi|255733000|ref|XP_002551423.1| chitin synthase 2 [Candida tropicalis MYA-3404]
 gi|240131164|gb|EER30725.1| chitin synthase 2 [Candida tropicalis MYA-3404]
          Length = 1108

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 29/140 (20%)

Query: 30  YSVFSLIFAFVNAAGLFLL-------LGAE--------FVAMITLVVYVGAVIVFFLFII 74
           Y + +++ ++ + A  FL+       LGA+        ++A+I L  YVG+V+  F+   
Sbjct: 766 YQLVTILVSWFSLASFFLVFRILTANLGADDMNFNVGKYLAIIFLWFYVGSVVCTFVLAF 825

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR------LVFKG 128
                        KK   + + F  +L A ++  A    V +    +S       +V   
Sbjct: 826 ------GNTPRGTKKFYLVIAIFFAVLMAYMMFAAIFLAVHTVTSIVSDHKTDFSIVLVF 879

Query: 129 NNVE--NIGKVLYTQYAYPL 146
            N +  ++   + + Y    
Sbjct: 880 TNTKFRDLVVSMVSTYVLYF 899


>gi|197311126|ref|YP_002154476.1| NADH dehydrogenase subunit 6 [Paratilapia polleni]
 gi|197304623|dbj|BAG69548.1| NADH dehydrogenase subunit 6 [Paratilapia polleni]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F    F  ++    V +  +P ++   L+       G+    G  F++++  ++Y
Sbjct: 1   MVYILFMFL-FGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLAGFGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   +       AEP  +          +LA  + +C +  M +    E+S
Sbjct: 60  LGGMLVVFAYSAAL------AAEPYPEGWGSWPVLGMMLAYVVGLCMAGGMFWGGWYEVS 113

Query: 123 RLVFKG 128
                 
Sbjct: 114 WAPVDD 119


>gi|29569516|gb|AAO85226.1| NADH dehydrogenase subunit 6 [Buteo rufofuscus]
 gi|281308314|gb|ADA58305.1| NADH dehydrogenase subunit 6 [Buteo rufofuscus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|29569528|gb|AAO85232.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis]
 gi|29569532|gb|AAO85234.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis borealis]
 gi|29569534|gb|AAO85235.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis borealis]
 gi|29569536|gb|AAO85236.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis borealis]
 gi|29569538|gb|AAO85237.1| NADH dehydrogenase subunit 6 [Buteo ventralis]
 gi|281308278|gb|ADA58287.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis]
 gi|281308280|gb|ADA58288.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|5835677|ref|NP_008495.1|ND6_15043 NADH dehydrogenase subunit 6 [Artibeus jamaicensis]
 gi|4164485|gb|AAD05448.1| NADH dehydrogenase subunit 6 [Artibeus jamaicensis]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +      + +     F+ ++  ++Y
Sbjct: 1   MMTYIVFVLSTIFVLSFVGFSSKPSPIYGGLGLIVSGGTGCSIVMSFNGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F +   M             +  +GSF +G++   ++V  +
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEV-WVSNKTVMGSFIVGVVMEFILVLVA 107


>gi|76009056|gb|ABA38990.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis
          ghiesbreghti]
 gi|76009058|gb|ABA38991.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis
          ghiesbreghti]
 gi|281308352|gb|ADA58324.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis]
 gi|281308354|gb|ADA58325.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPAAWGDWR 86


>gi|281308258|gb|ADA58277.1| NADH dehydrogenase subunit 6 [Buteo augur]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|207266430|ref|YP_002261416.1| NADH dehydrogenase subunit 6 [Falco tinnunculus]
 gi|158187490|gb|ABW23057.1| NADH dehydrogenase subunit 6 [Falco tinnunculus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F +      +  +  V +  +P Y V  L+   V   G  + LG  F++++  +VY+G
Sbjct: 2  TYFVFFLGVCFVFGALAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVSFISLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVALAADPFPEAWGNWR 86


>gi|25057417|ref|NP_739995.1| NADH dehydrogenase subunit 6 [Hypoptychus dybowskii]
 gi|25005969|dbj|BAC23591.1| NADH dehydrogenase subunit 6 [Hypoptychus dybowskii]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 43/108 (39%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF    ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFVMCLFLLGLVLGLVAVASNPSPYFAALGLVAVAGMGCGVLVSHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +           ++ G     ++G +A    V    +
Sbjct: 62  GMLVVFAYSAALAAEPFPEGWGSRQVGAYAGLYVGGVAGLSSVFREGW 109


>gi|332887124|dbj|BAK23223.1| NADH dehydrogenase subunit 6 [Barilius bendelisis]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 2/110 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +     I+    V +  +P +    L+       G+ +  G  F++M+ L++Y+G ++V 
Sbjct: 7   VLLVALIVGLIAVASNPSPYFGALGLVMVAGVGCGILVGCGGSFLSMVLLLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            +F            E    R  +G     IL   L+  A     +    
Sbjct: 66  -VFAYSTALAAESYPEAWGSRSVVGYVTAYILGVSLVAVAFWGGWYEGSW 114


>gi|325652665|gb|ADZ37162.1| NADH dehydrogenase subunit 6 [Nasalis concolor]
          Length = 174

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L S + I+      +  +PIY   +L+ + V    + L  G  ++ ++  ++Y
Sbjct: 1   MSYILF-LLSVLLIMGFVGFSSKPSPIYGGLALVVSGVVGCVIILNCGGAYMGLMMFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +    + I+            LGS  IG++    +V  
Sbjct: 60  LGGMMVVFGYT-TAMAIEEYPEAWVSGFEVLGSLLIGLVMEVGLVLW 105


>gi|315465333|emb|CBQ72568.1| hypothetical protein sr17125 [Sporisorium reilianum]
          Length = 157

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156
           +   +A G           +++IG  +YT  A  L ++  ILLL+
Sbjct: 106 YTFNTAFGATDTQFASFLQIQSIGYSIYTTGALWLIVTSVILLLA 150


>gi|37596479|gb|AAQ95000.1| NADH dehydrogenase subunit 6 [Vidua obtusa]
          Length = 159

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 33/55 (60%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +
Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL 73


>gi|28572803|ref|NP_789583.1| secreted protein [Tropheryma whipplei TW08/27]
 gi|28410936|emb|CAD67321.1| putative secreted protein [Tropheryma whipplei TW08/27]
          Length = 433

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 8/44 (18%)

Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRR------DIKRQDISKQL 180
            +   ++  +LL+++IGA+++  R           K Q++S Q+
Sbjct: 3   IWLFILT--VLLVALIGAVLISERKTSSCNRLLSKKNQELSDQV 44


>gi|28975381|gb|AAO61767.1| NADH dehydrogenase subunit 6 [Kaupifalco monogrammicus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F  +     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G +
Sbjct: 4  FVLILGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F++ + +       A    +
Sbjct: 64 LVVFVYSVCLAADPFPEAWGDWR 86


>gi|29569514|gb|AAO85225.1| NADH dehydrogenase subunit 6 [Buteo hemilasius]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|320161611|ref|YP_004174836.1| hypothetical protein ANT_22100 [Anaerolinea thermophila UNI-1]
 gi|319995465|dbj|BAJ64236.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
          Length = 167

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 33/103 (32%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L     +  +   +     + S   L       + +   +GA  VA++ L V  G V V 
Sbjct: 5   LIGAGILFCAVKAMQENRLLVSALWLALTSALVSWMMYRVGAAEVAVVELSVGAGLVTVL 64

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F+F I +   +    +    R       +  +   + +     
Sbjct: 65  FVFAINIAGDESLTRQSLVPRPLAWFAVVFSMGLLVWMIMPTL 107


>gi|294774429|dbj|BAJ05707.1| NADH dehydrogenase subunit 6 [Canis lupus]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           +G ++V F +   M             +  L +F  G+L+  L
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELL 102


>gi|189492790|gb|ACE01489.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     T  +PIY    LI +      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  L +F  G+L+  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLAAFITGLLSELLTAC 105


>gi|254568636|ref|XP_002491428.1| hypothetical protein [Pichia pastoris GS115]
 gi|238031225|emb|CAY69148.1| Hypothetical protein PAS_chr2-1_0516 [Pichia pastoris GS115]
 gi|328352062|emb|CCA38461.1| TRP-like ion channel pkd2 [Pichia pastoris CBS 7435]
          Length = 889

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 27/166 (16%)

Query: 4   QSLFFY---------LFSFMAIISSFLVVTVRNPIYSVFSL--IFAFVNAAGLFLLLGAE 52
           + +FF+         L   + +++    V   N       L  +  F  +  + LLL A 
Sbjct: 382 EWIFFFANFGALYGILILLLTVVTFIAAVYRPNLNPGAKWLKNVLIFFLSTLITLLLHAF 441

Query: 53  FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            +  +        V+ F+LF       D  V      R ++ +  I I  A + + +   
Sbjct: 442 VIPFL--------VLTFYLF--STFSSDDTVEYLTSPRAYILALAILIFFAFICLVSFFI 491

Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQY------AYPLEISGFI 152
             ++      + ++   N   +  +LY +Y       Y  E++  +
Sbjct: 492 FRYALSKSRKQKLYSSFNTMMLWGLLYFEYDPRLLFFYIFEVAEVL 537


>gi|148922780|ref|YP_001293786.1| NADH dehydrogenase subunit 6 [Nematalosa japonica]
 gi|148762658|dbj|BAF64099.1| NADH dehydrogenase subunit 6 [Nematalosa japonica]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 42/102 (41%)

Query: 16  IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75
           ++    V +   P Y    L+ +      +  +LG  F+A+   ++Y+G ++V F +   
Sbjct: 13  LLGIIAVASNPAPYYGALGLVVSSGLGCAILAMLGMPFLALALFLIYLGGMLVVFGYSSA 72

Query: 76  MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +    +  +   +       F++ ++ A ++        FSA
Sbjct: 73  LAADPVPESWGDESVFEYTVFYLLLVVAGVLYFGPTAHNFSA 114


>gi|15990570|gb|AAK60399.1| NADH dehydrogenase subunit 6 [Haliaeetus albicilla]
          Length = 164

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|217574699|gb|ACK55905.1| NADH dehydrogenase subunit 6 [Taenia multiceps]
          Length = 150

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV++ L  + F  + + S    ++     Y V  +I A V+    +L+ G  + +++  +
Sbjct: 1   MVLEILVTFYFFILLLFS----LSSHCVYYCVLLVINALVSCLICYLVYGFSWYSLVFCL 56

Query: 61  VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           VYVG V + F+F+ +   +    +     +   +  F IG+L   L     N
Sbjct: 57  VYVGGVYILFIFVSVFNPNDSFAIYHKVGESSIVLCFVIGLLCMCLFYSLVN 108


>gi|225697471|ref|YP_002734989.1| NADH dehydrogenase subunit 6 [Arborophila rufipectus]
 gi|204305246|gb|ACH99468.1| NADH dehydrogenase subunit 6 [Arborophila rufipectus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 36/80 (45%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++    V +  +P Y V  L+ A V   G  + LG  FV+++  ++Y+G ++V 
Sbjct: 7  FLGAGFMLGVLAVASNPSPYYGVVGLVLASVMGCGWLVSLGVSFVSLVLFMIYLGGMLVV 66

Query: 70 FLFIIMMLDIDIEVAEPRKK 89
          F++ + +       A    +
Sbjct: 67 FVYSVSLAADPYPEAWGSWR 86


>gi|28975371|gb|AAO61762.1| NADH dehydrogenase subunit 6 [Buteo brachypterus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|327492889|ref|YP_004347847.1| NADH dehydrogenase subunit 6 [Tetraodon miurus]
 gi|327392418|dbj|BAK09858.1| NADH dehydrogenase subunit 6 [Tetraodon miurus]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 43/108 (39%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           F + + +                L   ++GI+    ++       +S 
Sbjct: 67  FAYSVALAAEPYPETLGSWPVLVLMLMYLGIVMLVFVLFLGGGGEYSW 114


>gi|63259170|gb|AAY40289.1| NADH dehydrogenase subunit 6 [Platysternon megacephalum]
          Length = 174

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 46/106 (43%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SL+    +  G+ + +G  F++++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVLSLVLGAASGCGVLVSVGGSFISLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +V F +   ++     +             ++ ++   +++    +
Sbjct: 64  LVIFAYSAALVVEPYPIGWGSLWGVVYMVVYVLVIIGLVVIGHWLW 109


>gi|107736039|ref|YP_626405.1| NADH dehydrogenase subunit 6 [Microtus levis]
 gi|63081263|gb|AAY30382.1| NADH dehydrogenase subunit 6 [Microtus levis]
          Length = 174

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             YL S +  +         +PIY    LI +  +     L  G  F+  +  ++Y+G +
Sbjct: 4   LIYLLSSVIALGCMGTSLKPSPIYGGLCLIVSGCSGCLAVLGFGGSFLGFMVFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +V F +   M   D   A        +G  F+ I      V  SN+
Sbjct: 64  LVVFGYTTAMSAEDYPEA-LVSSWLTIGILFMSIFMELGAVFVSNY 108


>gi|229493700|ref|ZP_04387484.1| NADH-Ubiquinone/plastoquinone [Rhodococcus erythropolis SK121]
 gi|229319369|gb|EEN85206.1| NADH-Ubiquinone/plastoquinone [Rhodococcus erythropolis SK121]
          Length = 945

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 13/169 (7%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +  + M I ++     +RN + SV  +         LF L GA  +A+   +V     + 
Sbjct: 599 FTIALMMISAAIAATLMRNRLASVILVGLTGYGCGVLFALHGAPDLALTQFLV---ETLT 655

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-----LSR 123
             +F++++     EV E +          + +     +   + F   +         L  
Sbjct: 656 LVIFVLVLRKFPAEVDESKAIGFKWPRAALAVAVGITVTTIAAFATNARNTRPIYELLPD 715

Query: 124 LVFKGNNVENIGKVLYTQ---YAYPLEISGFILLLSMIGAIVLMLRHRR 169
             +   N +N+  VL      +    EIS  +LL++  G   L+ R+RR
Sbjct: 716 AAYDLGNGKNVVNVLLVDIRAWDTLGEIS--VLLVAATGVASLVFRNRR 762


>gi|182434582|ref|YP_001822301.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326775107|ref|ZP_08234372.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           cf. griseus XylebKG-1]
 gi|178463098|dbj|BAG17618.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326655440|gb|EGE40286.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces
           cf. griseus XylebKG-1]
          Length = 186

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 4/140 (2%)

Query: 30  YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89
            + F L+ +F+  A + L+ G  ++  + +++ +  +++  +F+IM +     +      
Sbjct: 28  RATFCLLASFIAVAVMILMTGLAYLGTVIILMMIIEMVIMAVFMIMYMMNPAGLMPMSMF 87

Query: 90  RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149
               G+  I      L+       +F A+    R     +    +G+ L   +   +   
Sbjct: 88  HNTRGAALIS----GLLFAGLTAGIFLADWPEKRGERPKDPTTALGETLMEGHMLTMMTL 143

Query: 150 GFILLLSMIGAIVLMLRHRR 169
           G  L  +++  +VL     R
Sbjct: 144 GVTLFSTIVATVVLATGRGR 163


>gi|164421111|ref|YP_001648516.1| NADH dehydrogenase subunit 6 [Pteragogus flagellifer]
 gi|222839617|ref|YP_002587012.1| NADH dehydrogenase subunit 6 [Pseudolabrus eoethinus]
 gi|124387731|gb|ABN10232.1| NADH dehydrogenase subunit 6 [Pteragogus flagellifer]
 gi|170292927|gb|ACB12510.1| NADH dehydrogenase subunit 6 [Pseudolabrus eoethinus]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V    +P ++   L+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLIGLVLGLAAVAANPSPYFAALGLVVVAGMGCGVLVGNGGPFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           F +   +                    ++  +    ++    +  F   G+
Sbjct: 67  FAYSAALAAEPYPEGWFNGSVALYMGLYLMGVGLAGMIFRGGWYSFCLPGD 117


>gi|110238769|dbj|BAE97660.1| ND6 [Cyprinus carpio]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V  +F            E    R  LG   + +L   L+        +    
Sbjct: 60  LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVGLVAGVFWGGWYEGSW 114


>gi|7329132|gb|AAF59910.1| NADH dehydrogenase subunit 6 [Buteo rufinus rufinus]
 gi|7329134|gb|AAF59911.1| NADH dehydrogenase subunit 6 [Buteo buteo buteo]
 gi|7329136|gb|AAF59912.1| NADH dehydrogenase subunit 6 [Buteo buteo vulpinus]
          Length = 164

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|108802840|ref|YP_637138.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
 gi|81295109|emb|CAH18602.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus]
          Length = 175

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F+L   + +IS  LV +     Y V SL+FA +  + L ++ G  F+ ++ L++Y+G 
Sbjct: 3  ITFFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62

Query: 66 VIVFFLFIIMMLD 78
          ++V F F +   D
Sbjct: 63 LLVVFAFCVGFTD 75


>gi|41353107|ref|NP_958776.1| NADH dehydrogenase subunit 6 [Ochotona princeps]
 gi|41016108|emb|CAD60958.1| NADH dehydrogenase subunit 6 [Ochotona princeps]
          Length = 174

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 39/108 (36%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L S M +       +  +PIY    LI +     G+ L  GA F+ ++  +VY+G ++V 
Sbjct: 7   LLSMMFVAGFVGFSSKPSPIYGGLGLIVSGGVGCGIILSYGASFLGLMMFLVYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           F +   M   +   +               ++   L+       V   
Sbjct: 67  FGYTTAMATEEYPESWGSNVVVLGTLVAGLVMELALVGLFMGDGVIDW 114


>gi|299829073|ref|YP_003735090.1| NADH dehydrogenase subunit 6 [Chimaera fulva]
 gi|298110899|gb|ADI57851.1| NADH dehydrogenase subunit 6 [Chimaera fulva]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRN-PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++F     M  I   + V     P ++ F L+ +     GL    G  F++++  ++Y+G
Sbjct: 2   IYFVFLMLMCFIMGLVAVASNPAPYFAAFGLVMSAAVGCGLLASHGVSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F++   +       AEP  +     S  I +    L V  +          +S L
Sbjct: 62  GMLVVFVYSAALT------AEPHPESWLDWSVLINVFMYALGVSVAAGYFCGGWSMMSWL 115

Query: 125 VFKGNN 130
               +N
Sbjct: 116 GVDESN 121


>gi|256985417|ref|YP_003162847.1| NADH dehydrogenase subunit 6 [Sinocyclocheilus grahami]
 gi|238683595|gb|ACR54081.1| NADH dehydrogenase subunit 6 [Sinocyclocheilus grahami]
          Length = 173

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 3/127 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+    G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGILAGHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V  +F            E    R  LG     +L   L+        +     ++
Sbjct: 60  LGGMLV--VFAYSAALAAEPFPEAWGNRSVLGYVVAYLLGVSLVAGFFWGGWYEGSWVVA 117

Query: 123 RLVFKGN 129
             + + +
Sbjct: 118 DGLKEFS 124


>gi|68989214|ref|YP_254634.1| NADH dehydrogenase subunit 6 [Okamejei kenojei]
 gi|41216618|gb|AAR99697.1| NADH dehydrogenase subunit 6 [Okamejei kenojei]
          Length = 172

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 42/94 (44%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++     I+    V +  +P Y+   L+ +     GL +  G+ F++++  ++Y+G ++V
Sbjct: 6   FIMMLGFIMGLVAVASNPSPYYAALGLVISAGVGCGLLVSSGSSFLSLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102
            F +   ++      +           F++G+L 
Sbjct: 66  VFAYTAALVAEPYPESWGDWSVFVYVLFYVGVLV 99


>gi|58045613|ref|YP_192925.1| NADH dehydrogenase subunit 6 [Bombina orientalis]
 gi|46242525|gb|AAS83379.1| NADH dehydrogenase subunit 6 [Bombina orientalis]
          Length = 169

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
            F    ++    V +  +P Y+   L+ A      + +  GA F++++  ++Y+G ++V 
Sbjct: 7   FFLVGLVLGLVAVASNPSPYYAALGLVMAAGAGCCVIVNFGASFLSLVLFLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
            +F            E       +G   + +L   +       + FS
Sbjct: 66  -VFAYSAALTAEPYPEAWGSWSVVGYILVYLLLVTMGYYVVGGLTFS 111


>gi|16357288|ref|NP_443383.1| NADH dehydrogenase subunit 6 [Scopelogadus mizolepis]
 gi|16267088|dbj|BAB70233.1| NADH dehydrogenase subunit 6 [Scopelogadus mizolepis]
          Length = 169

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-IIMMLD 78
             V +  +P ++   L+       GL +  G  F++++  ++Y+G ++V F +   +  +
Sbjct: 13  IAVASNPSPYFAALGLVVVAGLGCGLLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAE 72

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
              E    R   G++ ++ +G+L          + V
Sbjct: 73  PHPEGWGSRSVVGYVMAYCVGVLLVSGCFWGGWYEV 108


>gi|300859186|ref|YP_003784169.1| hypothetical protein cpfrc_01769 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686640|gb|ADK29562.1| putative membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206876|gb|ADL11218.1| Putative membrane protein [Corynebacterium pseudotuberculosis C231]
 gi|308277130|gb|ADO27029.1| Putative membrane protein [Corynebacterium pseudotuberculosis I19]
          Length = 433

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           + +V  L+  F   + +  L   +F A ++ +VY   V +   F + M+       +P  
Sbjct: 216 VAAVLFLVPGFPLFSAMIDLGRFDFDAGVSRLVYAVTVTLTATFSVAMIS-RATGLDPVP 274

Query: 89  KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY-----TQYA 143
                G  ++  L A  I      ++F++   ++ +        N+ K+L      T Y 
Sbjct: 275 VMVEPGDSWLIALFASFIGIGGFALLFNSSRRMALVAAAVGTTANMIKLLLEANNATDYV 334

Query: 144 YPLEISGFILLLSMIGA 160
               I+G I  + ++GA
Sbjct: 335 SVF-IAGLI--VGLLGA 348


>gi|288903551|ref|YP_003434307.1| NADH dehydrogenase subunit 6 [Palea steindachneri]
 gi|219562446|gb|ACL27739.1| NADH dehydrogenase subunit 6 [Palea steindachneri]
          Length = 175

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 48/110 (43%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M   F +LF    ++    V +  +  Y V  L+F  V+   +   +G  F++++  ++Y
Sbjct: 1   MMVFFMFLFEVCFVLWVISVASGPSSYYGVVGLVFGAVSGCLMLAGIGGSFISLVLFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F + + +       A       F  + ++ ++   ++ C   +
Sbjct: 61  LGGMLVVFAYSVALTGDPYPSAWRDYGSLFCMAGYVLLVVGAVMFCFDVW 110


>gi|269216417|ref|ZP_06160271.1| putative LPXTG-motif protein cell wall anchor domain protein
           [Slackia exigua ATCC 700122]
 gi|269129946|gb|EEZ61028.1| putative LPXTG-motif protein cell wall anchor domain protein
           [Slackia exigua ATCC 700122]
          Length = 550

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 107 VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166
             A+ + V  +    +           IG +L+T       + G +L+ + + AI+L  R
Sbjct: 494 TVATTYTVTQSIFNTTDFTLPK--TGGIGTILFT-------VGGIVLVGAAV-AIILTSR 543

Query: 167 HRRDIKR 173
            ++ +K+
Sbjct: 544 KKKVVKK 550


>gi|148922808|ref|YP_001293838.1| NADH dehydrogenase subunit 6 [Odaxothrissa vittata]
 gi|148762714|dbj|BAF64151.1| NADH dehydrogenase subunit 6 [Odaxothrissa vittata]
          Length = 173

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F LF F  ++    V +   P ++   L+ +      +  + G+ F+A+   ++Y+G 
Sbjct: 5   ISFLLFGF--VLGMVGVASNPAPYFAALGLVLSSGVGCAILAMFGSPFLALALFLIYLGG 62

Query: 66  VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           ++V F +   +  D   E             + +G+L A +    + +
Sbjct: 63  MLVVFGYSAALAADAHPESWGDASVFEHAMFYVVGVLVASMYFGPTAY 110


>gi|131839362|ref|YP_001096026.1|ND6_20621 NADH dehydrogenase subunit 6 [Cyprinodon rubrofluviatilis]
 gi|127461930|gb|ABO28472.1| NADH dehydrogenase subunit 6 [Cyprinodon rubrofluviatilis]
          Length = 173

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 39/104 (37%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y   F  ++    V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YCLLFGLVVGLAAVASNPSPYFAALGLVLVAGMGCGVLVGHGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   +                L   ++G +     +    +
Sbjct: 66  VFAYSAALAAEPYPEGWGSWPVLGLVVGYLGGVGVAAGMVVGGW 109


>gi|156142540|gb|ABU52035.1| NADH dehydrogenase subunit 6 [Tiaris olivaceus]
          Length = 166

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 ++    V +  +P Y V  L+ A V   G  + LG  F++++ ++VY+G ++V 
Sbjct: 1   FXGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELS 122
           F++ + +        E     G +G  F IG++    ++ +  F + + EG ++
Sbjct: 61  FVYSVSLAA--EPYPEAWGSSGVIGYGFGIGLVVVVGLMVSGVFGLLTGEGTVN 112


>gi|121582411|ref|YP_980189.1| NADH dehydrogenase subunit 6 [Coleonyx variegatus]
 gi|121309359|dbj|BAF43977.1| NADH dehydrogenase subunit 6 [Coleonyx variegatus]
          Length = 173

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 46/111 (41%), Gaps = 1/111 (0%)

Query: 8   FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F L + +  ++    V+   +P +    L+       GL ++ G  F++++  ++Y+G +
Sbjct: 4   FVLMASLCFLAGSAAVSANPSPFFGAVGLVVTAAFGCGLLVVSGWSFISLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +V F + + +                    + G++    ++    F+ +S+
Sbjct: 64  LVVFAYSVALSAEAYPETWADFSVVLYLVGYGGLVFVLGLLNGGPFIGYSS 114


>gi|29569520|gb|AAO85228.1| NADH dehydrogenase subunit 6 [Buteo augur]
          Length = 172

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|255506409|ref|YP_003097162.1| NADH dehydrogenase subunit 6 [Budorcas taxicolor]
 gi|197107937|gb|ACH42514.1| NADH dehydrogenase subunit 6 [Budorcas taxicolor]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+M  +F  + S + ++      +  +PIY    LI +     G+ L  G  F+ ++  +
Sbjct: 1   MIMYIVF--ILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNYGGSFLGLMVFL 58

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +Y+G ++V F +   M             +  LG+F  G+L    ++
Sbjct: 59  IYLGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFFMI 104


>gi|257062371|gb|ACV40201.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIVNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|165932477|ref|YP_001650734.1| NADH dehydrogenase subunit 6 [Eurypegasus draconis]
 gi|154758804|dbj|BAF74949.1| NADH dehydrogenase subunit 6 [Eurypegasus draconis]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L S + ++    V +  +P ++   L+       G+ +  G  F+++I  ++Y
Sbjct: 1   MTYIMFVLLSAL-VLGLVAVASNPSPYFAALGLVVVAGAGCGVLVGYGGSFLSLILFLIY 59

Query: 63  VGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +   +  +   E    R    ++G + + ++          +
Sbjct: 60  LGGMLVVFAYSSALAAEPYPETLGSRSVAVYIGMYMLAVMGFSTSFIGGWY 110


>gi|118573111|sp|Q074N0|POLG_YEFVE RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|81249972|gb|ABB69689.1| polyprotein [Yellow fever virus]
          Length = 3412

 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 3    MQSLFFYLFSFMAIISSFLVVTVRNPI-YSVFSLIFAFVNAAGLFLLLGAEFVAMITL-- 59
            M  +  ++ +   +++S +V+   +P   S  S+    +  +G  +     F+  +    
Sbjct: 2158 MTIVMLFILAG--LLTSGMVIFFMSPKGMSRMSMAMGTMAGSGYLM-----FLGGVKPTH 2210

Query: 60   VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            + YV    +   F++M++ I     +   +   +    IGIL    IV A
Sbjct: 2211 ISYV----MLIFFVLMVVIIPEPGQQRTIQDNQVAYLIIGILTLLSIVAA 2256


>gi|16357400|ref|NP_443448.1| NADH dehydrogenase subunit 6 [Kareius bicoloratus]
 gi|16267339|dbj|BAB70454.1| NADH dehydrogenase subunit 6 [Kareius bicoloratus]
 gi|225690864|gb|ACO06116.1| NADH dehydrogenase subunit 6 [Pseudopleuronectes herzensteini]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFVMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +     S  +  +     V   + + +    E S +
Sbjct: 62  GMLVVFAYSAAL------AAEPYPESWGSWSVMVYGVVYVAGVAMVSGLFWGGWYESSWV 115

Query: 125 VFK 127
           +  
Sbjct: 116 LVD 118


>gi|317097229|ref|YP_004123361.1| NADH dehydrogenase subunit 6 [Rattus fuscipes]
 gi|290573438|gb|ADD46555.1| NADH dehydrogenase subunit 6 [Rattus fuscipes]
          Length = 172

 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +     +    +PIY  F LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FILSLLFLAGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
             +F         E  E      F+   F+     +L++ 
Sbjct: 66  --VFGYTTAMATEEYPETWGSNWFIFGVFVLGFLMDLVML 103


>gi|19481538|gb|AAL88841.1|AF407108_1 NADH dehydrogenase subunit 6 [Vidua paradisaea]
          Length = 159

 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 33/55 (60%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +
Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL 73


>gi|328671393|gb|AEB26562.1| NADH dehydrogenase subunit 6 [Nannoperca australis]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 39/98 (39%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   ++  
Sbjct: 17  IAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSTALVAE 76

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
               +   +        ++ ++    ++    +   S 
Sbjct: 77  PYPESWGSRPVAVYMIMYLAVVTVVSVLLGGGWYETSW 114


>gi|240266450|ref|YP_002970802.1| NADH dehydrogenase subunit 6 [Cynoglossus semilaevis]
 gi|164519776|gb|ABY59945.1| NADH dehydrogenase subunit 6 [Cynoglossus semilaevis]
 gi|254763710|gb|ACT80241.1| NADH dehydrogenase subunit 6 [Cynoglossus semilaevis]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 40/96 (41%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   Y+   + ++    VV   +P +   +L+     A  + ++ G  F+A++  +VY+G
Sbjct: 2   TFIMYIALLVMVVGLGAVVAHPSPYFGSLTLVVVSGAACVVLIVYGGTFLALVMFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI 100
            ++V F +   +                  + ++G+
Sbjct: 62  GMLVVFAYTTALAADSFPYTLTYGDVMLYWTLYMGL 97


>gi|190349494|ref|YP_001974655.1| NADH dehydrogenase subunit 6 [Cyclemys atripons]
 gi|116518545|gb|ABJ99500.1| NADH dehydrogenase subunit 6 [Cyclemys atripons]
          Length = 174

 Score = 35.4 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  F++++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGVLSGCGVLVSMGGSFISLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   ++     +     +    G ++   L   ++       ++S EG  +  V 
Sbjct: 64  LVIFAYSSALMAESFPLGCVSLEGVIYGLYY---LFIVVVFMKMGCHLWSIEGVGADTVD 120

Query: 127 KGN 129
            G 
Sbjct: 121 AGG 123


>gi|190349382|ref|YP_001974694.1| NADH dehydrogenase subunit 6 [Pyxidea mouhotii]
 gi|108863145|gb|ABG22137.1| NADH dehydrogenase subunit 6 [Pyxidea mouhotii]
          Length = 174

 Score = 35.4 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 46/99 (46%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SLIF  ++  G+ + +G  FV+++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           +V F +    +     VA   +        ++ I+   +
Sbjct: 64  LVIFAYSSAWMAEPYPVAWGSQGGVVYVVSYVFIIVVFM 102


>gi|281308378|gb|ADA58337.1| NADH dehydrogenase subunit 6 [Rostrhamus sociabilis]
          Length = 172

 Score = 35.4 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|119360439|ref|YP_913573.1| NADH dehydrogenase subunit 6 [Barbus trimaculatus]
 gi|119225273|dbj|BAF41634.1| NADH dehydrogenase subunit 6 [Barbus trimaculatus]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 1/115 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +L  +L + +A+ S   VV+   P ++ F L+ A     G+ L  G  F++++  ++Y
Sbjct: 1   MTNLMSFLLAALAV-SLVSVVSNPTPYFAAFGLVVAAGVGCGVLLSCGGSFLSVVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +       A            ++  LA   +     +   S 
Sbjct: 60  LGGMLVVFAYAAALAAESFPEAWGSSSVLIYVLVYLLALALMAMFFGGGWYEGSW 114


>gi|257062377|gb|ACV40204.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|257062361|gb|ACV40196.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|257062359|gb|ACV40195.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|207269744|ref|YP_002261376.1| NADH dehydrogenase subunit 6 [Rhinolophus formosae]
 gi|158142298|gb|ABW20503.1| NADH dehydrogenase subunit 6 [Rhinolophus formosae]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTIFVISFVGFSSKPSPIYGGVGLIVSGGVGCGIVMSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F  G++   + V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFVAGLVVEIMFVL 105


>gi|5835413|ref|NP_007444.1|ND6_12189 NADH dehydrogenase subunit 6 [Ceratotherium simum]
 gi|3122556|sp|O03206|NU6M_CERSI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|2052163|emb|CAA69017.1| NADH-ubiquinone oxidoreductase subunit VI [Ceratotherium simum]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S M +IS     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMAYIGFILSIMFVISFVGFSSKPSPIYGGLVLIMSGGFGCGIVMSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                LG+F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSSAAVLGAFVLGVLMEVVLVL 105


>gi|289183271|ref|YP_003457250.1| NADH dehydrogenase subunit 6 [Ceratias uranoscopus]
 gi|288909049|dbj|BAI77285.1| NADH dehydrogenase subunit 6 [Ceratias uranoscopus]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 37/96 (38%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ +  GA F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVVVAGLGCGVLVGYGASFLSLVLFLIYLGGMLVVFAYSAALAAEPY 78

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
                  +     + ++  +          +  FS 
Sbjct: 79  PEGFGSWRVLGSAAIYLVGVGVAAGFFWGRWYEFSW 114


>gi|148922822|ref|YP_001293851.1| NADH dehydrogenase subunit 6 [Pellonula leonensis]
 gi|148762728|dbj|BAF64164.1| NADH dehydrogenase subunit 6 [Pellonula leonensis]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F LF F  ++    V +   P ++   L+ +      +  + G+ F+A+   ++Y+G 
Sbjct: 5   ISFLLFGF--VLGMVGVASNPAPYFAALGLVLSSGVGCAILAMFGSPFLALALFLIYLGG 62

Query: 66  VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           ++V F +   +  D   E             + +G+L A +    + +
Sbjct: 63  MLVVFGYSAALAADAHPESWGDASVFEHAMFYVVGVLIASMYFGPTAY 110


>gi|212725576|ref|YP_002317322.1| NADH dehydrogenase subunit 6 [Culaea inconstans]
 gi|212374493|dbj|BAG83064.1| NADH dehydrogenase subunit 6 [Culaea inconstans]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 46/107 (42%), Gaps = 3/107 (2%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +L + + +  +  V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V
Sbjct: 8   FLLAMVLVGGA--VSSGPSPFFAALGLVMVAGMGCGVLVSHGGPFLSLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMV 114
            F +   +           ++ G    F+ +G+     + C   + V
Sbjct: 66  VFAYSAALAAEPFPEGWGSRQVGVYMIFYALGVGLMSNMFCGGWYEV 112


>gi|126215485|ref|YP_001054826.1| NADH dehydrogenase subunit 6 [Odax cyanomelas]
 gi|125625495|dbj|BAF46855.1| ND6 [Odax cyanomelas]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       GL   LG  F+++I  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVLVAGMGCGLLASLGGPFLSLILFLIYLGGMLVVFAYSAAL----- 73

Query: 82  EVAEPRKKRGFLGSFFIGIL 101
             AEP       G   +GIL
Sbjct: 74  -AAEPYPDSWLSGPVVLGIL 92


>gi|56548675|ref|YP_161284.1| NADH dehydrogenase subunit 6 [Potorous tridactylus]
 gi|56398572|emb|CAG26444.1| NADH dehydrogenase subunit 6 [Potorous tridactylus]
          Length = 167

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 2/109 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ +  +LFS + I       +  +P+Y   SL+ +      + + L   F+ +I  ++Y
Sbjct: 1   MKMMIVFLFSVLLIFGFVAFASKPSPVYGGLSLVVSGGLGCAIVVSLEDVFLGLIVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V  +F         E  E         S  +  L  EL+    +
Sbjct: 61  LGGMLV--VFGYTAAMATEEYPESWVGNTVALSMLMFTLFMELVWYLMS 107


>gi|229931191|ref|YP_002887622.1| NADH dehydrogenase subunit 6 [Dicerorhinus sumatrensis]
 gi|229473123|gb|ACQ73096.1| NADH dehydrogenase subunit 6 [Dicerorhinus sumatrensis]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIGFILSVVFVISFVGFSSKPSPIYGGLVLIVSGGVGCGIVMSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                LG+F +G++   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNATVLGAFILGVMMEVVLVL 105


>gi|209886993|ref|YP_002290816.1| NADH dehydrogenase subunit 6 [Bungarus multicinctus]
 gi|170774091|gb|ACB36663.1| NADH dehydrogenase subunit 6 [Bungarus multicinctus]
          Length = 164

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 28  PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87
           P   V +L+    +   L +LLG  F A++  +VY+G ++V F + + +   +    E  
Sbjct: 26  PYQGVIALMGVSFSCCMLMVLLGRTFAALVMYIVYLGGLVVVFGYCVSV---EKGGKESF 82

Query: 88  KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
           K        F+ ++   L       + +S    ++ +   G  V
Sbjct: 83  KVSWSSYLVFLIVVLVSLYSDFGGLLTYSDWENMACMEINGGAV 126


>gi|161561765|ref|YP_001586257.1| NADH dehydrogenase subunit 6 [Archilochus colubris]
 gi|143024825|gb|ABO93121.1| NADH dehydrogenase subunit 6 [Archilochus colubris]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+ + V   G  + LG  FV+++  +VY+G
Sbjct: 2  TYFMLFLGLCFVLGGLAVASNPSPYYGVVGLVLSSVVGCGWLMSLGLSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVSLAADPFPETWGDWR 86


>gi|29569574|gb|AAO85255.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus unicinctus]
 gi|29569576|gb|AAO85256.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus unicinctus]
 gi|281308376|gb|ADA58336.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus]
          Length = 172

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|76009068|gb|ABA38996.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus]
 gi|76009070|gb|ABA38997.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus]
          Length = 172

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86


>gi|257062383|gb|ACV40207.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|126792879|gb|ABO27293.1| NADH dehydrogenase subunit 6 [Guaruba guarouba]
          Length = 170

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        +++S LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G
Sbjct: 2  TYFLMFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGTSFVSLVLFMVYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F++ + +
Sbjct: 62 GMLVVFVYSVSL 73


>gi|289833322|gb|ADD21344.1| NADH dehydrogenase subunit 6 [Larimichthys polyactis]
          Length = 172

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVVVAGLGCGILVGHGGHFLSLILFLIYLGGMLVVFAYSAAL----- 73

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
             AEP  +     S  + IL   + V   + + +    E S +   
Sbjct: 74  -AAEPYPESWGSRSVMVYILVYVVGVVMVSGLFWGGWYETSWVPVD 118


>gi|260150997|ref|YP_003208312.1| NADH dehydrogenase subunit 6 [Mesocricetus auratus]
 gi|186694662|gb|ACC86271.1| NADH dehydrogenase subunit 6 [Mesocricetus auratus]
          Length = 174

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+S+   + S    +         +PIY    LI +        + LG  F+ ++  ++Y
Sbjct: 2   MESIL--ILSSFIALGCLGTSLKPSPIYGGMCLIISGCAGCLAVMGLGGSFLGLMVFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   M       +       ++ S+ +  +    I         +   E  
Sbjct: 60  LGGMMVVFGYTTAM-------SAEEYPETWVSSWLMFGVLVMSIFMELGMTFVTNYYEGV 112

Query: 123 RLVFKGNN 130
            +V   N+
Sbjct: 113 EVVLNFNS 120


>gi|330467098|ref|YP_004404841.1| hypothetical protein VAB18032_15645 [Verrucosispora maris
           AB-18-032]
 gi|328810069|gb|AEB44241.1| hypothetical protein VAB18032_15645 [Verrucosispora maris
           AB-18-032]
          Length = 302

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 148 ISGFILLLSMIGAIVLMLRHRR 169
           ++G  LL++++G  VL  R RR
Sbjct: 277 LAGLFLLVALVGGGVLAARRRR 298


>gi|257062401|gb|ACV40216.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|281210989|gb|EFA85155.1| hypothetical protein PPL_02155 [Polysphondylium pallidum PN500]
          Length = 548

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 71  LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130
           L + +M D +     P K+   +       L   L+             ++S     GN 
Sbjct: 262 LLVALMTDWNQSCDFPLKQWATIQIIIQASLIINLLFLF---------FDISPTDTDGNI 312

Query: 131 VENIGKVLYTQYAYPLEISGFIL 153
           +  + ++L + Y     + G IL
Sbjct: 313 IPYLARILSSSYVIWFIV-GVIL 334


>gi|147917512|gb|ABQ52619.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|147917538|gb|ABQ52643.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062341|gb|ACV40186.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062349|gb|ACV40190.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062363|gb|ACV40197.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062381|gb|ACV40206.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062385|gb|ACV40208.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062387|gb|ACV40209.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062389|gb|ACV40210.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062403|gb|ACV40217.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|121582632|ref|YP_980202.1| NADH dehydrogenase subunit 6 [Lepidophyma flavimaculatum]
 gi|121309373|dbj|BAF43990.1| NADH dehydrogenase subunit 6 [Lepidophyma flavimaculatum]
          Length = 174

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L S   I+    V    +P + V  L+ + V  +G+  L+G  FV++   ++Y+G ++V 
Sbjct: 7   LLSVCIILGQLTVAANPSPYFGVIGLVLSAVFGSGMMALIGNSFVSLALFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           F + + +         P     +  S +  +  + ++     F+
Sbjct: 67  FAYSMALSSDPF----PETIGAWSASLYFLVFCSAVVFFGFMFV 106


>gi|242912968|ref|YP_002970913.1| NADH dehydrogenase subunit 6 [Trionyx triunguis]
 gi|239937441|dbj|BAH79155.1| NADH dehydrogenase subunit 6 [Trionyx triunguis]
          Length = 174

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 48/109 (44%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            F ++F    +     V +  +P Y V  L+F  V    + + LG  F++++  +VY+G 
Sbjct: 3   FFIFMFEICFVFWVVSVASGPSPYYGVVGLVFGAVFGCLVLIGLGGSFISLVLFLVYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           ++V F + + +      VA            ++ ++   ++VC   + +
Sbjct: 63  MLVVFAYSVALTGDSYPVAWCDYSNLSCMVGYLLLVFGGVVVCYGMWSL 111


>gi|194303999|gb|ACF41517.1| NADH dehydrogenase subunit 6 [Gadus morhua]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
              ++    V +  +P ++   L+        + +  G  F++++  ++Y+G ++V F +
Sbjct: 10  IGMVLGVISVASNPSPYFAALGLVLVAGVGCVVLMGHGGSFLSLVLFLIYLGGMLVVFAY 69

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
            + +       AEP  +     S    +L   L+V  +    +    E   +   
Sbjct: 70  CVAL------AAEPYPEAWGEWSVLGSVLGYLLLVVGAGSWFWGGWYEGMWVPVD 118


>gi|109689621|ref|YP_659497.1| NADH dehydrogenase subunit 6 [Piliocolobus badius]
 gi|88174300|gb|ABD39303.1| NADH dehydrogenase subunit 6 [Piliocolobus badius]
          Length = 174

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 1/110 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L S + ++      +  +PIY   +L+ + V    + L  G  ++ ++  ++Y
Sbjct: 1   MAYILF-LLSVLLVMGFIGFSSKPSPIYGGLALVISGVVGCVIILNYGGTYMGLMMFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +   M   +   A       F        +   LI+    +
Sbjct: 60  LGGMMVVFGYTTAMAIEEYPEAWGSGFEVFGSLLAGLAMEVGLILWVLEY 109


>gi|208433813|ref|YP_002265625.1| NADH dehydrogenase subunit 6 [Lactoria diaphana]
 gi|207367085|dbj|BAG72058.1| NADH dehydrogenase subunit 6 [Lactoria diaphana]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 42/115 (36%), Gaps = 1/115 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F LF F  ++    V    +P ++   L+       G+ +  G  F++++  ++Y
Sbjct: 1   MTYIMF-LFLFGLVVGLMAVAANPSPYFAALGLVVVAGLGCGVLVGHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +       +   +        +   +     V    +   S 
Sbjct: 60  LGGMLVVFAYSAALAAEPYPESWGSRPVVLSMMVYGAAVILASGVFWGGWYESSW 114


>gi|166851958|ref|YP_001661444.1| NADH dehydrogenase subunit 6 [Eremitalpa granti]
 gi|166788102|emb|CAP17692.1| NADH dehydrogenase subunit 6 [Eremitalpa granti]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +I      +  +P+Y    LI +     G+ +  G  F+ ++  +VY+G ++V
Sbjct: 6   FMLSVIFVIGFISFSSKPSPVYGGLGLIVSGGLGCGIVIYFGGSFLGLMVFLVYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            F +   M   +   A               +L   ++V         + G +  + +  
Sbjct: 66  VFGYTTAMATEEYPEAWGSNMVIMGAMMIGVVLEVLMMVLLVGNFGMDSYGYIGLVDWVI 125

Query: 129 NN 130
            N
Sbjct: 126 YN 127


>gi|111022734|ref|YP_705706.1| hypothetical protein RHA1_ro05770 [Rhodococcus jostii RHA1]
 gi|110822264|gb|ABG97548.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 702

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 4/140 (2%)

Query: 32  VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK-KR 90
             +L+ A    A L +       A ++++V+   V    L    +  + + +A  RK + 
Sbjct: 337 AVALVMALGAVALLVVSTEHRSAAYLSILVFAALVPTHQLTPYWLFGVTVALAVTRKIRP 396

Query: 91  GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK--VLYTQYAYPLEI 148
            +L   +  IL A L+        +      + +    +NV  +G    ++T        
Sbjct: 397 WWLPVPYFAILVAYLVPRLDIVAPYGLLSGFNPVDNAASNVTAVGTFGKIFTSAVCRSLS 456

Query: 149 SGFILLLSMIGAIVLMLRHR 168
           +G +LL +++ AI+L  R R
Sbjct: 457 AGIVLL-AVVCAILLWRRKR 475


>gi|29569518|gb|AAO85227.1| NADH dehydrogenase subunit 6 [Buteo augur]
          Length = 172

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|257062375|gb|ACV40203.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|257062347|gb|ACV40189.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062351|gb|ACV40191.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062353|gb|ACV40192.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|147917524|gb|ABQ52630.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|202071080|gb|ACH95425.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062337|gb|ACV40184.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062339|gb|ACV40185.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062343|gb|ACV40187.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062345|gb|ACV40188.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062365|gb|ACV40198.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062369|gb|ACV40200.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062373|gb|ACV40202.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062379|gb|ACV40205.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062399|gb|ACV40215.1| NADH dehydrogenase subunit 6 [Equus caballus]
 gi|257062407|gb|ACV40219.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|61200927|gb|AAX39830.1| NADH dehydrogenase subunit 6 [Bombina orientalis]
          Length = 169

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
            F    ++    V +  +P Y+   L+ A      + +  GA F++++  ++Y+G ++V 
Sbjct: 7   FFLVGLVLGLVAVASNPSPYYAALGLVMAAGAGCCVIVNFGASFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           F +   +       AEP  +     S    IL   L+V    +MV
Sbjct: 67  FAYSAALT------AEPYPEAWGSWSVVGYILVYLLLVIMGYYMV 105


>gi|84579697|dbj|BAE72275.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 44/109 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++    V +  +P ++   L+     + G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLIGLVLGLAAVASNPSPYFTALGLVTVAGVSCGILVSYGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L  F++ ++    +  +S +   S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSTLMLFYVLLVVCASVFFSSGWFEGSW 114


>gi|76009034|gb|ABA38979.1| NADH dehydrogenase subunit 6 [Busarellus nigricollis]
          Length = 172

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G +
Sbjct: 4  FVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGM 63

Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89
          +V F++ + +       A    +
Sbjct: 64 LVVFVYSVCLAADPFPEAWGDWR 86


>gi|115375580|ref|ZP_01462838.1| NADH-ubiquinone/plastoquinone family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|310818333|ref|YP_003950691.1| NADH-ubiquinone oxidoreductase, chain 5 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367447|gb|EAU66424.1| NADH-ubiquinone/plastoquinone family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309391405|gb|ADO68864.1| NADH-ubiquinone oxidoreductase, chain 5 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 763

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
           L V  R+ + ++ +L    +  + +++LLGA  +A+  +VV    V + F  I     + 
Sbjct: 611 LAVMTRSVLTALMALSVVGLTESFVYVLLGAPDLALTQVVVQTLTV-ILFALIFSRFPVQ 669

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELI 106
                 R++   L     G+++  L+
Sbjct: 670 PSGGRSRRRDAALSLAAGGLISWTLL 695


>gi|29569530|gb|AAO85233.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis borealis]
          Length = 107

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + LG  FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|298367387|gb|ADI79586.1| NADH dehydrogenase subunit 6 [Gekko gecko]
          Length = 169

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           +    V    + ++ V +LI   V+  G+ + LG  FV ++ L+VY+G ++V F + I +
Sbjct: 14  VGVAGVTANPSAVFGVGALILGAVSGCGILVGLGGSFVGLVLLLVYIGGMLVVFAYSIAL 73

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +   +E          +  +F+G L    ++ 
Sbjct: 74  V---VEPHLESWLEYAVLVYFVGYLVVTAVLW 102


>gi|148922626|ref|YP_001293799.1| NADH dehydrogenase subunit 6 [Sardinella maderensis]
 gi|148762672|dbj|BAF64112.1| NADH dehydrogenase subunit 6 [Sardinella maderensis]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 3/113 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F LF F  I+    V +   P ++   L+ +      +  + G+ F+A+   ++Y+G 
Sbjct: 5   ISFLLFGF--ILGMVGVASNPAPYFAALGLVLSSGVGCAILAMFGSPFLALALFLIYLGG 62

Query: 66  VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           ++V F +   +  D   E             + +G++ A +    + +   + 
Sbjct: 63  MLVVFGYSAALAADAHPESWGDASVFEHAMLYIVGVVGASMYFGPAAYGFSTG 115


>gi|44843559|emb|CAE48114.1| NADH deydrogenase subunit 6 [Bufo melanostictus]
          Length = 164

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 40/97 (41%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF F  ++    V +  +P Y+   L+ +      + +  G  F+ ++  +VY+G ++V 
Sbjct: 4   LFEFGLVVGLLAVASNPSPYYAALGLVGSAGAGCLILMDSGISFLCLVLFLVYLGGMMVV 63

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106
           F +   ++      A            ++ +L A  +
Sbjct: 64  FAYSAALVAEPYPEAWGGGAVWSYIIVYVFLLGAWWM 100


>gi|257062355|gb|ACV40193.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVISFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|218157299|ref|YP_002364453.1| NADH dehydrogenase subunit 6 [Larimichthys crocea]
 gi|162946605|gb|ABY21294.1| NADH dehydrogenase subunit 6 [Larimichthys crocea]
 gi|219560090|gb|ACL27253.1| NADH dehydrogenase subunit 6 [Larimichthys crocea]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V  +F         
Sbjct: 19  VASNPSPYFAALGLVVVAGLGCGILVGHGGHFLSLILFLIYLGGMLV--VFAYSAALAAE 76

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
              E    R  +   F+ ++   ++        +    
Sbjct: 77  PYPESWGSRRVMAYIFVYVVGVAMVSGLFWGGWYETSW 114


>gi|157778787|gb|ABV70918.1| NADH dehydrogenase subunit 6 [Bos taurus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           +G ++V F      +  +         +  LG+F  G+L    +V
Sbjct: 61  LGGMMVVFG-CTTAMATEQYPEIWLSNKAVLGAFVTGLLMEFFMV 104


>gi|19481566|gb|AAL88855.1|AF407122_1 NADH dehydrogenase subunit 6 [Plocepasser mahali]
          Length = 159

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV++  ++VY
Sbjct: 2  MEFVLF--LGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFVSLALVLVY 59

Query: 63 VGAVIVFFLFIIMM 76
          +G ++V F++ + +
Sbjct: 60 LGGMLVVFVYSVSL 73


>gi|302201534|gb|ADL09096.1| NADH dehydrogenase subunit 6 [Turtur tympanistria]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 40/84 (47%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G ++V F++ + +       
Sbjct: 21  SNPSPYYGVVGLVVASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPE 80

Query: 84  AEPRKKRGFLGSFFIGILAAELIV 107
           A    +    G  F+ +L    ++
Sbjct: 81  AWGDWRVVGYGLGFVLVLIVGAVM 104


>gi|13116580|ref|NP_076855.1| NADH dehydrogenase subunit 6 [Emeus crassus]
 gi|14039580|gb|AAK53318.1|AF338712_13 NADH dehydrogenase subunit VI [Emeus crassus]
 gi|12957466|gb|AAK07701.1| NADH dehydrogenase subunit 6 [Emeus crassus]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        I+ +  V +  +P Y V  L+   V   G  L LGA F++++  +VY+G
Sbjct: 2  TYFVLFLGVCFILGALAVASNPSPYYGVLGLVVGSVVGCGWLLSLGASFISLVLFLVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|76009072|gb|ABA38998.1| NADH dehydrogenase subunit 6 [Leucopternis princeps]
          Length = 172

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          L     ++    V +  +P Y V  L+   V   G  + LG  FV ++  +VY+G ++V 
Sbjct: 7  LLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVGLVLFMVYLGGMLVV 66

Query: 70 FLFIIMMLDIDIEVAEPRKK 89
          F++ + +            +
Sbjct: 67 FVYSVCLAADPFPETWGDWR 86


>gi|167951304|ref|ZP_02538378.1| hypothetical protein Epers_35080 [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 38

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPI 29
          M  + + FY+ + + I ++ +V+T RNP+
Sbjct: 4  MTFEKIVFYVLAALLIFAATMVITRRNPV 32


>gi|119360747|ref|YP_913729.1| NADH dehydrogenase subunit 6 [Misgurnus nikolskyi]
 gi|119225455|dbj|BAF41803.1| NADH dehydrogenase subunit 6 [Misgurnus nikolskyi]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            II    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V  +F  
Sbjct: 12  LIIGLIAVASNPAPYFAALGLVVAAGFGCGVLISHGGSFLSLVLFLIYLGGMLV--VFAY 69

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
                     E    R  LG   I ++   L++   +   +    
Sbjct: 70  SAALAAEPYPESWGDRSVLGYVLIYVVGVSLVMSFLHEGWYEGSW 114


>gi|111924889|dbj|BAF02829.1| NADH dehydrogenase subunit 6 [Biwia zezera]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGILVGSGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V  +F            E    R   G   I +L   L+  A     +    
Sbjct: 60  LGGMLV--VFAYSAALAAEPFPEAWGSRSVAGYVMIYLLGVVLMAGALWGGWYEGSW 114


>gi|83309055|ref|YP_423934.1| NADH dehydrogenase subunit 6 [Gekko gecko]
 gi|37538483|gb|AAQ93005.1| NADH dehydrogenase subunit 6 [Gekko gecko]
          Length = 169

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 17  ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
           +    V    + ++ V +LI   V+  G+ + LG  FV ++ L+VY+G ++V F + I +
Sbjct: 14  VGVAGVTANPSAVFGVGALILGAVSGCGILVGLGGSFVGLVLLLVYIGGMLVVFAYSIAL 73

Query: 77  LDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +   +E          +  +F+G L    ++ 
Sbjct: 74  V---VESHLESWLEYAVLVYFVGYLVVTAVLW 102


>gi|270267418|ref|YP_003331118.1| NADH dehydrogenase subunit 6 [Talismania bifurcata]
 gi|269994332|dbj|BAI50323.1| NADH dehydrogenase subunit 6 [Talismania bifurcata]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    I+    V +   P ++ F L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLIVGLIAVASNPAPYFAAFGLVVAAGVGCGVLVGHGGAFLSLVLFLIYLGGMLVV 66

Query: 70  FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +  +   E    R   G++ ++F+G++ A        +
Sbjct: 67  FAYSAALAAEPFPETWGDRSVVGYVVAYFVGVVLAAGWFWGGWY 110


>gi|238801615|ref|YP_002922020.1| polyprotein [Wesselsbron virus]
 gi|197631351|gb|ACH70606.1| polyprotein [Wesselsbron virus]
          Length = 3405

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 51/114 (44%), Gaps = 15/114 (13%)

Query: 1    MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSL---IFAFVNAAGLFLLLGAEF--VA 55
            M+ ++   +L   +AII +  V+        +F L     + ++ A + +L+ A    + 
Sbjct: 2148 MMPEATTIFLLVMLAIICTSGVI--------MFFLAPKGLSRMSMAMMTMLVSAYLMSLG 2199

Query: 56   MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
             +  V     ++VFF+F+++++       +       +    +G+L+  L+V A
Sbjct: 2200 GMNPVQISCVMLVFFIFMVVLIP--EPGTQRSTYDNQIIYLLVGVLSLILLVAA 2251


>gi|119360649|ref|YP_913443.1| NADH dehydrogenase subunit 6 [Labeo batesii]
 gi|119225133|dbj|BAF41504.1| NADH dehydrogenase subunit 6 [Labeo batesii]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 3/117 (2%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++ F L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLVAVASNPTPYFAAFGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V  +F            E    R  LG   + +L   L+        +    
Sbjct: 60  LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVGLVAGLFWGGWYEGSW 114


>gi|116734799|ref|YP_842437.1| NADH dehydrogenase subunit 6 [Ardea novaehollandiae]
 gi|109676614|gb|ABG37706.1| NADH dehydrogenase subunit 6 [Ardea novaehollandiae]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++    V +  +P Y V  L+   V   G  L LG  F++++  +VY+G
Sbjct: 2  TYFVIFLGVCFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLLSLGVSFISLVLFLVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +       A    +
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86


>gi|5835217|ref|NP_008262.1|ND6_10685 NADH dehydrogenase subunit 6 [Felis catus]
 gi|1352592|sp|P48926|NU6M_FELCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1098535|gb|AAC48580.1| NADH dehydrogenase subunit 6 [Felis catus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGTGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   L  F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105


>gi|302331442|gb|ADL21636.1| Integral membrane protein [Corynebacterium pseudotuberculosis 1002]
          Length = 425

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88
           + +V  L+  F   + +  L   +F A ++ +VY   V +   F + M+       +P  
Sbjct: 208 VAAVLFLVPGFPLFSAMIDLGRFDFDAGVSRLVYAVTVTLTATFSVAMIS-RATGLDPVP 266

Query: 89  KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY-----TQYA 143
                G  ++  L A  I      ++F++   ++ +        N+ K+L      T Y 
Sbjct: 267 VMVEPGDSWLIALFASFIGIGGFALLFNSSRRMALVAAAVGTTANMIKLLLEANNATDYV 326

Query: 144 YPLEISGFILLLSMIGA 160
               I+G I  + ++GA
Sbjct: 327 SVF-IAGLI--VGLLGA 340


>gi|49616814|ref|YP_044724.1| NADH dehydrogenase subunit 6 [Abronia graminea]
 gi|49256970|dbj|BAD24774.1| NADH dehydrogenase subunit 6 [Abronia graminea]
          Length = 171

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 47/108 (43%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             Y+F    +++   V T  +P +    L+ + V   G+ + +G  FV+++  ++Y+G +
Sbjct: 4   LIYIFFLCLMLALIWVATNPSPYFGAAGLVGSSVVGCGVLVGVGYSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +V F + + +       A       F   F + ++   L++      +
Sbjct: 64  LVVFAYTVSLASEPYPEAVGDSAGYFWSYFGLFVMMGMLMIMEGTVGL 111


>gi|257062393|gb|ACV40212.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|270267562|ref|YP_003331247.1| NADH dehydrogenase subunit 6 [Alepocephalus umbriceps]
 gi|269994164|dbj|BAI50167.1| NADH dehydrogenase subunit 6 [Alepocephalus umbriceps]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    I+    V +   P ++ F L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLIVGLVAVASNPAPYFAAFGLVVAAGVGCGILVGHGGAFLSLVLFLIYLGGMLVV 66

Query: 70  FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +  +   E    R   G++ ++F+G++ A        +
Sbjct: 67  FAYSAALAAEPFPETWGDRSVIGYVVAYFVGVVLAAGWFWGGWY 110


>gi|148922556|ref|YP_001293864.1| NADH dehydrogenase subunit 6 [Sardina pilchardus]
 gi|148762742|dbj|BAF64177.1| NADH dehydrogenase subunit 6 [Sardina pilchardus]
          Length = 199

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 34/101 (33%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL+    +I +  V     P ++   L+        + +   A  +A++ L++Y+G ++V
Sbjct: 11  YLWLVGFVIGALGVGINPAPHFAALGLVMCSGACCVILVFSKATALAVVLLLIYLGGMLV 70

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
              F                      +F I      ++   
Sbjct: 71  VLAFSCACAGGLSFDEPFEASPHDAAAFVIIGFIVGMMYLV 111


>gi|5835119|ref|NP_007171.1|ND6_10543 NADH dehydrogenase subunit 6 [Equus caballus]
 gi|1352594|sp|P48657|NU6M_HORSE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|577583|emb|CAA56090.1| NADH dehydrogenase [Equus caballus]
 gi|47156692|gb|AAT12243.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|322422462|ref|YP_004221887.1| NADH dehydrogenase subunit 6 [Heterotis niloticus]
 gi|317176381|dbj|BAJ54205.1| NADH dehydrogenase subunit 6 [Heterotis niloticus]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L   M II    V +   P Y+ F L+ A V    + +  G  F++++  ++Y+G ++V 
Sbjct: 7   LLMVMLIIGLVAVASNPAPYYAAFGLVLAAVMGCCVLMWHGGPFLSLVLFMIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           F +   +       AEP  +  +  S F  +L   L +      +     +   +V  
Sbjct: 67  FAYSAAL------AAEPYPEVWWDLSVFSYVLVYLLGLGVVGGWLSDGWYKNFWVVVD 118


>gi|269994136|dbj|BAI50141.1| NADH dehydrogenase subunit 6 [Alepocephalus longiceps]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    I+    V +   P ++ F L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLIVGLVAVASNPAPYFAAFGLVVAAGVGCGVLVGHGGTFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +       A   R   G++ ++ +G++ A        +
Sbjct: 67  FAYSAALAAEPFPEAWGDRSGIGYVFAYLVGVVLAAGWFWGGWY 110


>gi|238927418|ref|ZP_04659178.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531]
 gi|238884700|gb|EEQ48338.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531]
          Length = 526

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 22/32 (68%)

Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174
            + +++   +L++++I A VLM R ++ ++R+
Sbjct: 427 IFYMQVGAVLLIIALIVAAVLMYRRKKRLERE 458


>gi|114052874|ref|YP_740094.1| NADH dehydrogenase subunit 6 [Biwia zezera]
 gi|111924869|dbj|BAF02816.1| NADH dehydrogenase subunit 6 [Biwia zezera]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + I+    V +   P ++   L+ A     G+    G  F++++  ++Y
Sbjct: 1   MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGILFGSGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   +       AEP  +     S    ++   L V     +++    E S
Sbjct: 60  LGGMLVVFAYSAAL------AAEPFPEAWGSRSVAGYVMIYLLGVVLMAGVLWGGWYEGS 113

Query: 123 RLVFKG 128
            ++  G
Sbjct: 114 WVMIDG 119


>gi|14039336|gb|AAK53181.1| NADH dehydrogenase subunit 6 [Galaxias brevipinnis]
          Length = 173

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78

Query: 82  EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
             +   R   G++ ++F+G+L    +     +
Sbjct: 79  PESWGDRSVLGYVLAYFVGVLVTAGLFWGGWY 110


>gi|226365243|ref|YP_002783026.1| hypothetical protein ROP_58340 [Rhodococcus opacus B4]
 gi|226243733|dbj|BAH54081.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 702

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 4/141 (2%)

Query: 32  VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK-KR 90
             +L+ A    A L +       A ++++V+   V    L    +  +   +A  RK + 
Sbjct: 337 AVALVMALGVVALLVVSTEHRSAAYLSILVFAALVPTHQLTPYWLFGVTAALAVTRKIRP 396

Query: 91  GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKV--LYTQYAYPLEI 148
            +L   +  IL A L+        +      + +    +NV  +G V  ++T        
Sbjct: 397 WWLPVPYFAILVAYLVPRLDIVAPYGLLSGFNPVDNAASNVTAVGTVGKIFTSAVCRSLS 456

Query: 149 SGFILLLSMIGAIVLMLRHRR 169
           +G ILL +++ AI+L    R 
Sbjct: 457 AGIILL-AVVCAILLWRSKRP 476


>gi|84579641|dbj|BAE72223.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
          Length = 173

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++    V +  +P ++   L+     + G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L   ++ ++A   +  +  +   S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVAWASVFFSGGWFEGSW 114


>gi|25057226|ref|NP_739722.1| NADH dehydrogenase subunit 6 [Lota lota]
 gi|25005619|dbj|BAC23279.1| NADH dehydrogenase subunit 6 [Lota lota]
          Length = 173

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
              ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +
Sbjct: 10  IGMVLGVISVASNPSPYFAALGLVLVAGVGCGVLMGHGGSFLSLVLFLIYLGGMLVVFAY 69

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
              +       AEP  +     S    +L   L+V       +    E + +   
Sbjct: 70  CAAL------AAEPYPEAWGEWSVLGSVLGYLLLVFGGVSWFWGGWYEGAWVPVD 118


>gi|89953627|ref|YP_525475.1| NADH dehydrogenase subunit 6 [Siphonops annulatus]
 gi|62002045|gb|AAX58672.1| NADH dehydrogenase subunit 6 [Siphonops annulatus]
          Length = 167

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F       ++    V +  +P ++ F L+ +      + +  G  F++++  ++Y
Sbjct: 1   MTYVIFLGL-IGLVLGMVGVASNPSPYFAAFGLVLSSACGCLILVSFGMSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           +G ++V F +   M       A       F    +  +L     +     ++F A+
Sbjct: 60  LGGMLVVFAYSAAMAAEPYPEAWGSLSVVFYVLIYCVVLIVGWNLMGEVDVMFKAQ 115


>gi|327492609|ref|YP_004347507.1| NADH dehydrogenase subunit 6 [Lagocephalus sceleratus]
 gi|327392558|dbj|BAK09988.1| NADH dehydrogenase subunit 6 [Lagocephalus sceleratus]
          Length = 173

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 38/98 (38%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V F +   +   
Sbjct: 17  IAVASNPSPYFGALSLVVVAGFGCGVLIWHGGSFLSLVLFLIYLGGMLVVFAYSAALAAE 76

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
                            + G++ +  ++     + +S 
Sbjct: 77  PYPETLGSGPVLVSMLMYFGVVVSTFVLFLGGALEYSW 114


>gi|327492819|ref|YP_004347702.1| NADH dehydrogenase subunit 6 [Tetraodon palembangensis]
 gi|327392390|dbj|BAK09832.1| NADH dehydrogenase subunit 6 [Tetraodon palembangensis]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 41/108 (37%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGILVWHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           F +   +                    ++ ++    ++    +  +S 
Sbjct: 67  FAYSAALAAEPYPETLGSWPVLVSMLMYVSVVVLVFMLFLGGWGEYSW 114


>gi|296099638|gb|ADG95242.1| NADH dehydrogenase subunit 6 [Polypterus sp. golden dust]
          Length = 167

 Score = 35.0 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 36/67 (53%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          L   +FS + +IS   V +  +P ++ F L+       G+ +  G  F++MI  ++Y+G 
Sbjct: 2  LLMVVFSIIFLISLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGVTFLSMILFLIYLGG 61

Query: 66 VIVFFLF 72
          ++V F +
Sbjct: 62 MLVVFAY 68


>gi|225690858|gb|ACO06113.1| NADH dehydrogenase subunit 6 [Paralichthys lethostigma]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    L  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFVMCLVLFCLVLGLVAVASNPSPFFAALGLVVVAGMGCGVLIGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNF 112
            ++V F +   +       +         G S+ +G++ A        +
Sbjct: 62  GMLVVFAYSAALAAEPYPESWGSWPVMIYGASYMVGVILASATFWGGWY 110


>gi|257062391|gb|ACV40211.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.0 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|109689579|ref|YP_659484.1| NADH dehydrogenase subunit 6 [Rhinopithecus roxellana]
 gi|88174286|gb|ABD39290.1| NADH dehydrogenase subunit 6 [Rhinopithecus roxellana]
          Length = 174

 Score = 35.0 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F LFS + I+      +  +PIY   +L+ + V    + L  G  ++ ++  ++Y
Sbjct: 1   MSYILF-LFSMLLIMGFVGFSSKPSPIYGGLALVISGVIGCIIILNYGGTYMGLMMFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +    + I+            LGS   G++    ++  
Sbjct: 60  LGGMMVVFGYT-TAMAIEEYPEAWVSGWEVLGSLLTGLMMEVGLILW 105


>gi|257791375|ref|YP_003181981.1| cell divisionFtsK/SpoIIIE [Eggerthella lenta DSM 2243]
 gi|317490517|ref|ZP_07948995.1| FtsK/SpoIIIE family protein [Eggerthella sp. 1_3_56FAA]
 gi|325831520|ref|ZP_08164774.1| FtsK/SpoIIIE family protein [Eggerthella sp. HGA1]
 gi|257475272|gb|ACV55592.1| cell divisionFtsK/SpoIIIE [Eggerthella lenta DSM 2243]
 gi|316910368|gb|EFV31999.1| FtsK/SpoIIIE family protein [Eggerthella sp. 1_3_56FAA]
 gi|325486774|gb|EGC89222.1| FtsK/SpoIIIE family protein [Eggerthella sp. HGA1]
          Length = 842

 Score = 35.0 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 24/156 (15%)

Query: 11  FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLL-LGAEFVAMITLVVYVGAVIVF 69
           F+ +A++     V   N +      + +FV+ A    L LGA  +  + L++  GA    
Sbjct: 61  FAVLAVVLFVAAVLPTNAV------VTSFVSTALHLSLGLGAYLLPFLLLII--GA---- 108

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
                 +   D E    R   G +  F   +    L    S             L  +G 
Sbjct: 109 ----SFLARFDRERVPVRVAVGLVMIFVAALSLLALFTPESAPDSVDRLFLSDELAARGG 164

Query: 130 ----NVENIGKVLYTQYAYPLEISGFIL--LLSMIG 159
                +  +G  L+ Q    + + G +L  L+ +IG
Sbjct: 165 YLGAGIAWVGISLFGQAVTCIIMIGIVLAGLV-IIG 199


>gi|25057685|ref|NP_739930.1| NADH dehydrogenase subunit 6 [Sargocentron rubrum]
 gi|25005899|dbj|BAC23526.1| NADH dehydrogenase subunit 6 [Sargocentron rubrum]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   +   
Sbjct: 17  VAVASNPSPYFAALGLVGVAGLGCGVLVGYGGPFLSLVLFLIYLGGMLVVFAYSAALAAE 76

Query: 80  DIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMV 114
               +   R   G++ ++ IG+L          + V
Sbjct: 77  PYPESWGSRSVVGYVVAYLIGVLLVSSYFWGGWYEV 112


>gi|212725464|ref|YP_002317218.1| NADH dehydrogenase subunit 6 [Aulichthys japonicus]
 gi|212374521|dbj|BAG83090.1| NADH dehydrogenase subunit 6 [Aulichthys japonicus]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 40/96 (41%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+    G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VSSNPSPYFAALGLVLVSGMGCGVLASHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
                 ++ GF    ++  + A   + A  +  +S 
Sbjct: 79  PEGLGSRQVGFYMMLYVAGVVALSNMYAGGWYEWSW 114


>gi|29570709|ref|NP_818824.1| NADH dehydrogenase subunit 6 [Sarcocheilichthys variegatus
           microoculus]
 gi|29501036|dbj|BAC67401.1| NADH dehydrogenase subunit 6 [Sarcocheilichthys variegatus
           microoculus]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGVLVGSGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   +       AEP  +     S    ++   L V     + +    E S
Sbjct: 60  LGGMLVVFAYSAAL------AAEPFPEAWGSRSVVGYVVVYFLGVVLMGGVFWGGWYEGS 113

Query: 123 RLVFKG 128
            ++  G
Sbjct: 114 WVIIDG 119


>gi|222837521|ref|YP_002586879.1| NADH dehydrogenase subunit 6 [Gyrinomimus myersi]
 gi|222051584|dbj|BAH15270.1| NADH dehydrogenase subunit 6 [Gyrinomimus myersi]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +          ++    V +  +P ++   L+       GL +  G  F++++  ++Y+G
Sbjct: 2   TYLMSFLLVGLVVGLIAVASNPSPFFAALGLVVVAGLGCGLLVGYGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +     S F       + V  + +       E+  +
Sbjct: 62  GMLVVFAYSAAL------AAEPFPESWGSWSVFGQAFIYFMGVVLAFWYFRGGWSEVCWV 115

Query: 125 VFK 127
             +
Sbjct: 116 PVE 118


>gi|115531621|ref|YP_784007.1| NADH dehydrogenase subunit 6 [Neofelis nebulosa]
 gi|78157547|gb|ABB22891.1| NADH dehydrogenase subunit 6 [Neofelis nebulosa]
          Length = 175

 Score = 35.0 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A      + L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTIFVVSFVSFSSKPSPIYGGFGLIVAGGVGCAIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   LG F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGMFITGVLAELLTAC 105


>gi|95929675|ref|ZP_01312417.1| TM2 domain protein [Desulfuromonas acetoxidans DSM 684]
 gi|95134372|gb|EAT16029.1| TM2 domain protein [Desulfuromonas acetoxidans DSM 684]
          Length = 314

 Score = 35.0 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 7/121 (5%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFV--NAAGLFLLLGAEFVAMITLV---VYVGAVIVFFLF 72
               V   RN +  V  L+  F      G    L      ++ L+    Y+  ++ F  F
Sbjct: 97  CGVRVAPPRNVVNKVALLVITFFLGGLGGHKFYLKKNLQGVLYLLFFWTYIPTLVAFIEF 156

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132
           II     + E+ E   +    G F + ++   L +      +   +    R   K  NV 
Sbjct: 157 IIYACKSEPELQEKYPETSTGGIFIVLLVPVLLAIVGILAAIAIPQYVAYRQ--KAGNVA 214

Query: 133 N 133
            
Sbjct: 215 A 215


>gi|301353446|ref|YP_003795669.1| NADH dehydrogenase subunit 6 [Collichthys lucidus]
 gi|300069590|gb|ADJ66694.1| NADH dehydrogenase subunit 6 [Collichthys lucidus]
          Length = 172

 Score = 35.0 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVVVAGLGCGILVGHGGHFLSLILFLIYLGGMLVVFAYSAAL----- 73

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
             AEP  +        + ILA  + V   +   +    E S +   
Sbjct: 74  -AAEPYPESWGSRPVMVYILAYVVGVVMVSGQFWGGWYETSWVPVD 118


>gi|284162680|ref|YP_003401303.1| hypothetical protein Arcpr_1584 [Archaeoglobus profundus DSM 5631]
 gi|284012677|gb|ADB58630.1| hypothetical protein Arcpr_1584 [Archaeoglobus profundus DSM 5631]
          Length = 147

 Score = 35.0 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   + +      +  R+  YS   +    +  AG++   G      +  ++++GA+   
Sbjct: 10  ILYVLIVTFGIASLLSRDNFYSALYMCLTMICIAGVYAYYGIHSAFALIALIFIGALGAV 69

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
            L  ++      + +   K R    +  + +  A +
Sbjct: 70  TL--VLAYSYREKASIKYKLRWIFFALAVAVFLALV 103


>gi|5081437|gb|AAD39381.1|AF123901_1 NADH dehydrogenase subunit 6 [Grus canadensis canadensis]
 gi|5081439|gb|AAD39382.1|AF123902_1 NADH dehydrogenase subunit 6 [Grus canadensis rowani]
 gi|5081441|gb|AAD39383.1|AF123903_1 NADH dehydrogenase subunit 6 [Grus canadensis pratensis]
 gi|5081443|gb|AAD39384.1|AF123904_1 NADH dehydrogenase subunit 6 [Grus canadensis pratensis]
 gi|5081445|gb|AAD39385.1|AF123905_1 NADH dehydrogenase subunit 6 [Grus canadensis pulla]
 gi|224504190|gb|ACN53760.1| NADH dehydrogenase subunit 6 [Grus canadensis]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 2/109 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F +      ++    V +  +P Y V  L+ A V   G  L LG  FV+++  +VY+G
Sbjct: 2   TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVVASVVGCGWLLSLGVSFVSLVLFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
            ++V F++ + +        E    R  +G     +L   + V    F+
Sbjct: 62  GMLVVFVYSVSLAA--DPYPEAWGDRRVVGYVAGLVLVLVMGVVIGGFV 108


>gi|308522851|gb|ACA80587.2| NADH dehydrogenase subunit 6 [Homo sapiens]
          Length = 174

 Score = 35.0 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 39/103 (37%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             +L S   ++      +  +PIY    LI + V    + L  G  ++ ++  ++Y+G +
Sbjct: 4   ALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +V F +   M   +   A        +       +   L++  
Sbjct: 64  MVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWV 106


>gi|183982355|ref|YP_001850646.1| MmpL family transport protein [Mycobacterium marinum M]
 gi|183175681|gb|ACC40791.1| conserved transmembrane transport protein, MmpL family
           [Mycobacterium marinum M]
          Length = 1457

 Score = 35.0 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 17/129 (13%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLI----FAFVNAAGL-----FLLLGAEFV 54
             + F +F+ + I+   LV+ +R  + +   LI     +F++A GL      L+LG +  
Sbjct: 837 HDIQFIVFATILIVFLILVILLRAIV-APLYLIGSVLVSFLSALGLGVIVFQLILGKDLH 895

Query: 55  AMI-----TLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
             +      L+V VGA     L  I  +  +            +GS    I +A LI  A
Sbjct: 896 WSLPGLSFILLVAVGADYNMLL--ISRIRDESPHGVRVGVIRTVGSTGGVITSAGLIFAA 953

Query: 110 SNFMVFSAE 118
           S F + +A 
Sbjct: 954 SMFGLLAAS 962


>gi|146411779|gb|ABI54474.1| polyprotein [Wesselsbron virus]
          Length = 3405

 Score = 35.0 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 51/114 (44%), Gaps = 15/114 (13%)

Query: 1    MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSL---IFAFVNAAGLFLLLGAEF--VA 55
            M+ ++   +L   +AII +  V+        +F L     + ++ A + +L+ A    + 
Sbjct: 2148 MMPEATTIFLLVMLAIICTSGVI--------MFFLAPKGLSRMSMAMMTMLVSAYLMSLG 2199

Query: 56   MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
             +  V     ++VFF+F+++++       +       +    +G+L+  L+V A
Sbjct: 2200 GMNPVQISCVMLVFFIFMVVLIP--EPGTQRSTYDNQIIYLLVGVLSLILLVAA 2251


>gi|332886830|dbj|BAK22950.1| NADH dehydrogenase subunit 6 [Leptobarbus hoevenii]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G
Sbjct: 2   TYFMSLLLVALIVGLVAVASNPTPYFAALGLVVAAGVGCGILVGCGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +     S    +L   L V       +    E S +
Sbjct: 62  GMLVVFAYSAAL------AAEPFPEAWGSRSVVGYVLVYLLGVGLMAGFFWGGWYEGSWV 115

Query: 125 VFKG 128
           V  G
Sbjct: 116 VIDG 119


>gi|126792873|gb|ABO27289.1| NADH dehydrogenase subunit 6 [Diopsittaca nobilis]
 gi|126792876|gb|ABO27291.1| NADH 6 [Diopsittaca nobilis]
          Length = 170

 Score = 35.0 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        +++S LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G +
Sbjct: 4  FLMFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|226310865|ref|YP_002770759.1| hypothetical protein BBR47_12780 [Brevibacillus brevis NBRC 100599]
 gi|226093813|dbj|BAH42255.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 645

 Score = 35.0 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 49  LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           LG   + +  +VV  G +    L    ++D   E     ++   L    +   A E    
Sbjct: 81  LGDTLLGLWNVVVDAGDIASTALPTSYLVDAIYEGVTGEERPSLLERNDLARGAVETATN 140

Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPL 146
           A N++  +  G  S    K ++ +++G+ LY  Y  P 
Sbjct: 141 AVNYVGDTVTGNKSWEQIK-SDAKSVGQGLYDDYIDPF 177


>gi|25057288|ref|NP_739852.1| NADH dehydrogenase subunit 6 [Cetostoma regani]
 gi|25057628|ref|NP_739865.1| NADH dehydrogenase subunit 6 [Eutaeniophorus sp. 033-Miya]
 gi|222834812|ref|YP_002586801.1| NADH dehydrogenase subunit 6 [Parataeniophorus gulosus]
 gi|25005773|dbj|BAC23409.1| NADH dehydrogenase subunit 6 [Cetostoma regani]
 gi|25005787|dbj|BAC23422.1| NADH dehydrogenase subunit 6 [Eutaeniophorus sp. 033-Miya]
 gi|222051612|dbj|BAH15296.1| NADH dehydrogenase subunit 6 [Parataeniophorus gulosus]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       GL +  G  F++++  ++Y+G ++V F +   +   
Sbjct: 17  IAVASNPSPYFAALGLVVVAGLGCGLLIGYGGPFLSLVLFLIYLGGMLVVFAYSAAL--- 73

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
               AEP  +     S     +   ++V + +   +    E S +   
Sbjct: 74  ---AAEPFPESWCNWSVVGYAMTYLILVVSISSYFWGDWYEASWVPAD 118


>gi|331090822|ref|ZP_08339668.1| hypothetical protein HMPREF9477_00311 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399681|gb|EGG79343.1| hypothetical protein HMPREF9477_00311 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 385

 Score = 35.0 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 9/139 (6%)

Query: 4   QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFL-LLGAEFVAMITLVVY 62
            ++ F +     +  + +++     + S   LIF FV    L+L ++   F    + VV 
Sbjct: 133 TTILFAMIGVFLL--ALVLIGRGKGVTSALGLIFTFVCILYLYLPMMYLGFSPFFSAVV- 189

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
              V +    + M               G +G   I  + A L       +      ++ 
Sbjct: 190 ---VTILTTLVTMYFIGGFSKKTLCAIVGTVGGVVIAGIFANL-FGKLGHITGHNVSDIE 245

Query: 123 RLVFKGNNVE-NIGKVLYT 140
            L++ G N +  IG +L++
Sbjct: 246 TLLYIGQNSKLQIGGLLFS 264


>gi|16357162|ref|NP_443266.1|ND6_15810 NADH dehydrogenase subunit 6 [Saurida undosquamis]
 gi|16266860|dbj|BAB70051.1| NADH dehydrogenase subunit 6 [Saurida undosquamis]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 42/115 (36%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF F  ++    V +   P ++   L+ +     G+ L  G  F++++  +VY+G
Sbjct: 2   AYLMSLFLFGFVVGMVGVASNPAPYFAALGLVLSAGFGCGVMLSCGGSFLSLVLFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            ++V F +   +       +   +        ++G +          +   +   
Sbjct: 62  GMLVVFAYSAALAAEPYPTSWGDRSVAGYVVVYLGGVVMAGFGLLGGWYDITWIT 116


>gi|270155282|gb|ACZ62678.1| NADH dehydrogenase subunit 6 [Notothenia coriiceps]
          Length = 174

 Score = 35.0 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 9/141 (6%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL  F  ++    V    +P Y+   L+       G  + LG  F  ++  ++Y+G ++V
Sbjct: 6   YLLMFGVVVGMAAVAANPSPFYAALGLVMVAAMGCGFIMCLGGTFSCLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
            F + + +    +   +AE    +  +G   +  + A     +   + +   G+ S +  
Sbjct: 66  VFAYSVALCSDALPTGLAEGSVLKSMVGYLGLTGVVALFQQSSEAPLFWWFVGQESEMSV 125

Query: 127 KGNNVENI-------GKVLYT 140
                E +       G +L T
Sbjct: 126 MQGETEGVSEAYGSGGILLLT 146


>gi|25057827|ref|NP_740060.1| NADH dehydrogenase subunit 6 [Carangoides armatus]
 gi|25006066|dbj|BAC23681.1| NADH dehydrogenase subunit 6 [Carangoides armatus]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 33/68 (48%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2  TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLIGHGGPFLSLVLFLIYLG 61

Query: 65 AVIVFFLF 72
           ++V F +
Sbjct: 62 GMLVVFAY 69


>gi|299823674|ref|YP_003734470.1| NADH dehydrogenase subunit 6 [Collichthys niveatus]
 gi|297242126|gb|ADI24736.1| NADH dehydrogenase subunit 6 [Collichthys niveatus]
          Length = 172

 Score = 35.0 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVVVAGLGCGILVGHGGHFLSLILFLIYLGGMLVVFAYSAAL----- 73

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
             AEP  +     S  + IL   + V   + + +    E S +   
Sbjct: 74  -AAEPYPESWGSRSVMVYILVYVVGVVMVSGLFWGGWYETSWVPVD 118


>gi|238550522|gb|ACR44378.1| NADH dehydrogenase subunit 6 [Bambusicola fytchii]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ + V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGTCFMLGVLAVASNPSPYYGVVGLVVSSVVGCGWLVSLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
            ++V F++ + +       A    +   +G     IL   +      F+ F
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWR--VVGYGLGFILVVFVGAVLGGFVDF 110


>gi|119360259|ref|YP_913391.1| NADH dehydrogenase subunit 6 [Opsariichthys uncirostris]
 gi|119225077|dbj|BAF41452.1| NADH dehydrogenase subunit 6 [Opsariichthys uncirostris]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 1/115 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGILVGYGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +       A   +        ++  +A    V    +   S 
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLVYLAGVALAAGVFWGGWYEGSW 114


>gi|42717972|ref|NP_976098.1| NADH dehydrogenase subunit 6 [Rhinolophus monoceros]
 gi|62510827|sp|Q94VK5|NU6M_RHIMO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|15420942|gb|AAK97519.1|AF406806_12 NADH dehydrogenase subunit 6 [Rhinolophus monoceros]
          Length = 175

 Score = 35.0 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 2/107 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTIFVISFVGFSSKPSPIYGGVGLIVSGGVGCGIVMSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V  +F         +  E       +   FI  L  E++   
Sbjct: 61  LGGMLV--VFGYTTAMATEQYPEVWVSNKVVMGAFISGLIVEVVFVL 105


>gi|5835287|ref|NP_008314.1|ND6_10917 NADH dehydrogenase subunit 6 [Crossostoma lacustre]
 gi|464251|sp|P34196|NU6M_CROLA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|336715|gb|AAB96822.1| NADH dehydrogenase subunit 6 [Crossostoma lacustre]
 gi|284507253|dbj|BAI67681.1| NADH dehydrogenase subunit-6 [Crossostoma lacustre]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 2/110 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L     I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LLLMALIVGLIAVASNPAPYFAALGLVVAAGVGCGVLVSHGGSFLSLVLFLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            +F            E    R  +G   I +L   L+V       +    
Sbjct: 66  -VFAYSAALAAEPFPEAWGDRSVVGYVMIYLLGVGLMVGVFWEGWYEGSW 114


>gi|315142312|gb|ADT82255.1| NADH dehydrogenase subunit 6 [Hylobates muelleri]
          Length = 174

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 43/105 (40%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   +L S + ++      +  +PIY    L+ + V    + L  G  ++ ++  ++Y+G
Sbjct: 2   TYTLFLLSVILVMGFVGFSSKPSPIYGGLVLVISGVVGCAIILNYGGGYLGLMVFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            ++V F +   M   +   A         G     ++   L++ A
Sbjct: 62  GMMVVFGYTTAMAIEEYPEAWGSGVEVLAGVLVGLVMEVGLVLWA 106


>gi|208433916|ref|YP_002265638.1| NADH dehydrogenase subunit 6 [Chilomycterus reticulatus]
 gi|207367099|dbj|BAG72071.1| NADH dehydrogenase subunit 6 [Chilomycterus reticulatus]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 43/105 (40%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +
Sbjct: 10  FGLVLGLVAVASNPSPYFAALGLVLVAGLGCGVLVSHGGSFLSLVLFLIYLGGMLVVFAY 69

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
              +       +   +   F G  ++G++     V    +   S 
Sbjct: 70  SAALAAEPFPESLGSRSVAFSGVVYVGVVFMVSSVFWGGWYESSW 114


>gi|84488772|ref|YP_448814.1| NADH dehydrogenase subunit 6 [Manouria emys]
 gi|67005631|gb|AAY62429.1| NADH dehydrogenase subunit 6 [Manouria emys]
          Length = 174

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 42/106 (39%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SL+    +  G+ + +G  FV+++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMIGVSCSSSPYYGVLSLVLGAASGCGVLVGMGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +V F +   +                     +      ++V  S +
Sbjct: 64  LVIFAYSSALAAEPYPAGWGSLDAIIYVVSCMIAAVWFMMVDYSWW 109


>gi|8844994|ref|NP_059961.1| NADH dehydrogenase subunit 6 [Typhlonectes natans]
 gi|8650319|gb|AAF78157.1|AF154051_12 NADH dehydrogenase subunit 6 [Typhlonectes natans]
          Length = 171

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 8/115 (6%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F+      ++    V +  +P Y+   L+    +   + + +G  F+++I  ++Y
Sbjct: 1   MSYIAFFSL-IGVVLGLIGVASNPSPYYAALGLVVGAASGCVVLIGVGVNFLSLILFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   M      VA             +G +   L+V    + +   
Sbjct: 60  LGGMLVVFSYSAAMAAESYPVAWGEWS-------VVGNVVGYLVVFGGGWALIDG 107


>gi|84488704|ref|YP_448879.1| NADH dehydrogenase subunit 6 [Testudo marginata]
 gi|67005703|gb|AAY62496.1| NADH dehydrogenase subunit 6 [Testudo marginata]
          Length = 174

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y VFSL+       G+ + +G  FV++I  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFMIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +V F +   +                 G  ++  +   ++   S +
Sbjct: 64  LVIFAYSCALAAEPYPAGWGTLDVVIYGLCYLVCVLWLMLTDYSWW 109


>gi|169627739|ref|YP_001701388.1| putative monovalent cation/H+ antiporter subunit A [Mycobacterium
           abscessus ATCC 19977]
 gi|169239706|emb|CAM60734.1| Putative cation antiporter NADH dehydrogenase subunit
           [Mycobacterium abscessus]
          Length = 949

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 40/107 (37%), Gaps = 3/107 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   + + ++     +RN + +V  +         +F L GA  +A+   +V     +  
Sbjct: 599 VVGLLILAAAIGATVMRNRLAAVLLVGITGYGTGTIFALHGAPDLALTQFLV---ETLTL 655

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
            +F++++  +  E    +  R  L    + I     +     + + +
Sbjct: 656 VIFVLVLRALPAESDIQQANRFRLPRAVLAIAVGCTVTALGVYAMAA 702


>gi|3551904|gb|AAC34851.1| NADH dehydrogenase subunit 6 [Schistolais leucopogon]
          Length = 159

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%)

Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          +    V +  +P Y V  L+ A +   G    LG  F++++ ++VY+G ++V F++ + +
Sbjct: 14 LGGLAVASNPSPYYGVVGLVMASIAGCGWLAGLGVSFMSLVLVMVYLGGMLVVFVYSVSL 73


>gi|84579599|dbj|BAE72184.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 42/109 (38%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++    V +  +P ++   L+     + G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L   ++ ++    +  +  +   S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSTLMLVYVLLVTCASVFFSGGWFEGSW 114


>gi|256427207|ref|YP_003126977.1| NADH dehydrogenase subunit 6 [Scorpis lineolata]
 gi|256353359|dbj|BAH97868.1| NADH dehydrogenase subunit 6 [Scorpis lineolata]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF    I+    V +  +P ++   L+       G+ +  G  F+ ++  ++Y+G
Sbjct: 2   TFVMSLFLICLIVGLVAVASNPSPYFAALGLVVVSGMGCGVLVGHGGSFLPLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +     +  + + +  ++V     + +    E S +
Sbjct: 62  GMLVVFAYCSAL------AAEPYPESWGSRAVAVYMASYVVLVVVMAGLFWGGWYESSWV 115

Query: 125 VFK 127
             +
Sbjct: 116 TVE 118


>gi|124007622|ref|ZP_01692326.1| serine/threonine kinase with GAF domain, putative [Microscilla
           marina ATCC 23134]
 gi|123986920|gb|EAY26685.1| serine/threonine kinase with GAF domain, putative [Microscilla
           marina ATCC 23134]
          Length = 771

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 28  PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF---------IIMMLD 78
           P +S   L+FA VNAA +F    A  + +  L+  + A+ V  +          II    
Sbjct: 293 PRHSFMFLVFALVNAAVMFFAWSATVLWVYQLICGIEALRVTIVAIRRKKKGAKIIFAGV 352

Query: 79  IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           + + +  P     FL      ++++ +I    NF + S  G +S
Sbjct: 353 VGLIIFTPLGTLAFLFPAIGQLISSNIIALMVNFGILSVTGTVS 396


>gi|45685717|ref|YP_003672.1| NADH dehydrogenase subunit 6 [Thylamys elegans]
 gi|45598343|emb|CAD48250.1| NADH dehydrogenase subunit 6 [Thylamys elegans]
          Length = 166

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 40/96 (41%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M+ +  +L SF+ I+      +  +P+Y   SL+ +      + + L   F+ ++  +VY
Sbjct: 1  MKMMIIFLISFLLIVGFVAFASKPSPVYGGLSLVASGGLGCAVVICLEDVFLGLVVFLVY 60

Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
          +G ++V F +   M   +           F    F 
Sbjct: 61 LGGMLVVFGYTAAMATEEYPETWVGNTVAFGMLLFA 96


>gi|326909370|ref|YP_004327639.1| NADH dehydrogenase subunit 6 [Niwaella delicata]
 gi|300508089|dbj|BAJ11474.1| NADH dehydrogenase subunit-6 [Niwaella delicata]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L     I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LLLMALIVGLVAVASNPAPYFAALGLVVAAGVGCGVLISHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +       +   R   G++  + IG+       C   +
Sbjct: 67  FAYSAALAAEPFPESWGDRSVLGYVSVYLIGVGLTLSFFCEGWY 110


>gi|118196948|emb|CAL37045.1| NADH dehydrogenase subunit 6 [Eunectes notaeus]
          Length = 173

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M++   FF +     ++ + ++       Y V SL+     +     ++G  F+A++  +
Sbjct: 1   MLIVDYFFCMIMMFMVVGAVILSMTLVSYYGVISLMGFVFLSCIFMSVMGRTFIALVMYI 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEG 119
           VY+G +IV F + I +     +V +    + F   F  +G++    +V    F  F  E 
Sbjct: 61  VYLGGLIVVFGYCISVEKDMGDVYKATMSKFFTYLFVCVGVMVYLWVVVFIGFGSFIVEL 120

Query: 120 ELSRLVFKGNN 130
           +    V  G N
Sbjct: 121 DQDCFVPIGVN 131


>gi|5835343|ref|NP_007379.1|ND6_11653 NADH dehydrogenase subunit 6 [Rhinoceros unicornis]
 gi|2499297|sp|Q96070|NU6M_RHIUN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1666205|emb|CAA66012.1| NADH subunit 6 [Rhinoceros unicornis]
          Length = 175

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S + +IS     +  +PIY    LI +     G+ +  G  F+ ++  ++Y+G ++V
Sbjct: 7   FILSIVFVISFVGFSSKPSPIYGGLVLIVSGGVGCGIVMSFGGSFLGLMVFLIYLGGMLV 66

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            F +   M                L +F +G+L   ++V   
Sbjct: 67  VFGYTTAMATEQYPEV-WVSNATVLSTFILGVLMEAMLVLYM 107


>gi|295394961|ref|ZP_06805174.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit
           Na+/H+ antiporter, MnhA subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972294|gb|EFG48156.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit
           Na+/H+ antiporter, MnhA subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 1006

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           + + + ++      +    +V  +          F + GA  +A+   +V    ++V F+
Sbjct: 598 AAITVPAALAATVAKKRFQAVVIVGVTGYGMVAFFAMQGAPDLALTQALVETITIVV-FI 656

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFF---IGILAAELIVCASNFMVFSA----EGELSRL 124
            ++  L +D+     +     + +      G+L    +V A    + +      GEL+  
Sbjct: 657 LVLRRLPVDMAGDPSKNFSPPIRAIIGASFGLLMMVGVVVAMGNRIHTPVSDVWGELAYN 716

Query: 125 VFKGNNVENIGKV 137
           V  G N+ N+  V
Sbjct: 717 VGHGKNIVNVALV 729


>gi|257062367|gb|ACV40199.1| NADH dehydrogenase subunit 6 [Equus caballus]
          Length = 175

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY    L+ +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLVVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105


>gi|5836084|ref|NP_008067.1|ND6_15107 NADH dehydrogenase subunit 6 [Amblyraja radiata]
 gi|4406281|gb|AAD19940.1| NADH dehydrogenase subunit 6 [Amblyraja radiata]
          Length = 172

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 41/93 (44%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++     I+    V +  +P Y+   L+ +     GL +  G+ F++++  ++Y+G ++V
Sbjct: 6   FIMMLGFIMGLVAVASNPSPYYAALGLVISAGVGCGLLVSSGSSFLSLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
            F +   ++      +           F++G L
Sbjct: 66  VFAYTAALVAEPYPESWGDWSVLIYVLFYVGGL 98


>gi|71411790|ref|XP_808129.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70872268|gb|EAN86278.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 887

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 30/156 (19%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           + S+ F+    + +  +   ++ R P  SV        N  G+ L +   F+ ++     
Sbjct: 657 LSSVVFFFAITVFLRKTLGTISCRAPWRSVSY--TTMFNLDGIMLTMFGYFMLVLL---- 710

Query: 63  VGAVIVFFLFIIMMLDIDI---------------EVAEPRKKRGFLGSFFIGILAAELIV 107
                  F F ++                     E    R     +  + IGI  A  + 
Sbjct: 711 -----ATFAFALVYSRWHTREEIEAHVQEFQALPEFWTFRNTTKVVAVYVIGIGQALCLG 765

Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143
                 ++     +       +    IG VLY  + 
Sbjct: 766 YLMKLWIYRTSNVVWNWEASPS----IGAVLYMTFL 797


>gi|307720750|ref|YP_003891890.1| hypothetical protein Saut_0829 [Sulfurimonas autotrophica DSM
           16294]
 gi|306978843|gb|ADN08878.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 601

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 32  VFSLIFAFVNAAGLFLLLGAEFVAMITLVV---YV-GAVIVFFLFIIMMLDIDIEVAEPR 87
           + +L   F+  +G+ L+     +     V+   +V G++ V  LF++  L   I+ +  +
Sbjct: 5   LINLDMLFMFLSGILLMDYFHVIWSYFRVIEFLHVFGSIAVTVLFVLPFLYKHIKESMVQ 64

Query: 88  KKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            K   L     G++   +IV      +    G
Sbjct: 65  FKHKSLSGVLFGLVFFIIIVSGVYLFLVGNRG 96


>gi|218782540|ref|YP_002433858.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763924|gb|ACL06390.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 934

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 14/134 (10%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIF-------AFVNAAGLFLLLGAEFV 54
            +  + FY   F  + S  L  +  N ++++  LI         F+  A  F L+    +
Sbjct: 51  SLYLILFYYLFFGLLDSRLLADSTVNAVFTIRFLIVGPIITLALFLTYAKFFKLVMQPVL 110

Query: 55  AMITLVVYVGAVIVFFL------FIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
           A +  +   G V+V  +      F   + L +    A    K  F+ +   G     L  
Sbjct: 111 AAVMFITGAGIVMVLIIAPPPLNFAYYVGLILVFIHAYTFTKIRFIWASLAGWGLVILYE 170

Query: 108 CASNFMVFSAEGEL 121
             + +++++    L
Sbjct: 171 IVTVWVIYTPAAIL 184


>gi|38707638|ref|NP_944709.1| NADH dehydrogenase subunit 6 [Platanista minor]
 gi|38602527|emb|CAD87986.1| NADH6 protein [Platanista minor]
          Length = 175

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++S   V +  +P+Y    LI       G+ L  G  F+ ++  +VY
Sbjct: 1   MMMYIVFIMSIIFVVSIVGVSSKPSPVYGGLGLIVGGGAGCGIILNFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F      +  D         +  LG+F +G++   L+V 
Sbjct: 61  LGGMLVVFGHT-TAMAADQHPKVWTSTKIVLGAFLLGLVMEFLVVL 105


>gi|166066479|gb|ABY80743.1| NADH dehydrogenase subunit 6 [Pseudopungtungia nigra]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGVLIGCGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +   +       A   R   G++  + +G++ A  +     +
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLIYLVGVILAAGLFWGEWY 110


>gi|117165272|emb|CAJ88834.1| putative NADH dehydrogenase I complex, subunit [Streptomyces
           ambofaciens ATCC 23877]
          Length = 971

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 1/117 (0%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           + +   ++ L + VR  + +V          A LF+  GA  +A+    V   + ++ F+
Sbjct: 599 AVLTCAAALLCMGVRRRMKAVVLAGLTGYGTALLFVTQGAPDLALTQFCVETVS-MIVFV 657

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            ++  + +  E    R +R       +   A   +V         A+   + +V + 
Sbjct: 658 LVLRRMPVHFEENYSRWRRLLRMPVALAGGACVALVVWIMAGHRRADSAGAAMVEET 714


>gi|294494337|gb|ADE93032.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494343|gb|ADE93036.1| NADH dehydrogenase subunit 6 [Seriola dumerili]
 gi|294494379|gb|ADE93060.1| NADH dehydrogenase subunit 6 [Seriola rivoliana]
 gi|294494382|gb|ADE93062.1| NADH dehydrogenase subunit 6 [Seriola rivoliana]
 gi|294494385|gb|ADE93064.1| NADH dehydrogenase subunit 6 [Seriola rivoliana]
 gi|294494388|gb|ADE93066.1| NADH dehydrogenase subunit 6 [Seriola rivoliana]
 gi|294494391|gb|ADE93068.1| NADH dehydrogenase subunit 6 [Seriola rivoliana]
 gi|294494394|gb|ADE93070.1| NADH dehydrogenase subunit 6 [Seriola rivoliana]
 gi|294494397|gb|ADE93072.1| NADH dehydrogenase subunit 6 [Seriola rivoliana]
 gi|294494400|gb|ADE93074.1| NADH dehydrogenase subunit 6 [Seriola rivoliana]
 gi|294494403|gb|ADE93076.1| NADH dehydrogenase subunit 6 [Seriola rivoliana]
 gi|294494406|gb|ADE93078.1| NADH dehydrogenase subunit 6 [Seriola rivoliana]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 33/68 (48%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          +   YL  F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2  TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65 AVIVFFLF 72
           ++V F +
Sbjct: 62 GMLVVFAY 69


>gi|126792882|gb|ABO27295.1| NADH dehydrogenase subunit 6 [Guaruba guarouba]
          Length = 170

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%)

Query: 7  FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
          F        +++S LV +  +P Y V  L+F  V   G  + LG  FV+++  +VY+G +
Sbjct: 4  FLMFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGTSFVSLVLFMVYLGGM 63

Query: 67 IVFFLFIIMM 76
          +V F++ + +
Sbjct: 64 LVVFVYSVSL 73


>gi|255537321|ref|XP_002509727.1| conserved hypothetical protein [Ricinus communis]
 gi|223549626|gb|EEF51114.1| conserved hypothetical protein [Ricinus communis]
          Length = 297

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 37  FAFVNAAGLFLLLGA--EFVAMITLV--VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92
           F FV    ++LL G     ++ + +   + VGA  +  L II+ +++ + +         
Sbjct: 146 FGFVRVGLIYLLAGFGGSILSALFIQRNISVGASALLTLVIIIAINLAVGILPHVDNFAH 205

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152
           +G F  G     +I+    F  + +    +    K  + +         Y Y   +   +
Sbjct: 206 IGGFLTGFFLGFVILLRPQFGWYESRHLPADARVKSRH-KA--------YQYAFLLIAVV 256

Query: 153 LLLS 156
           LL++
Sbjct: 257 LLVA 260


>gi|148922738|ref|YP_001293773.1| NADH dehydrogenase subunit 6 [Ilisha elongata]
 gi|148762644|dbj|BAF64086.1| NADH dehydrogenase subunit 6 [Ilisha elongata]
          Length = 171

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 1/97 (1%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
           F  +++   V +   P +  F L+FA  +  G+  + G  F+A++  ++Y+G ++V F++
Sbjct: 10  FGMVVAMVGVASNPAPYFGAFGLVFASGSVCGVLAVYGMPFLALVLFLIYLGGMLVVFVY 69

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
               L  D+   +  +   F+     G+    + VC 
Sbjct: 70  S-SGLAADLFPEDWSEVAVFMSVVLYGVGLVYVGVCV 105


>gi|14039316|gb|AAK53171.1| NADH dehydrogenase subunit 6 [Galaxias postvectis]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78

Query: 82  EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
             +   R   G++ ++F+G+LA   +     +
Sbjct: 79  PESWGDRSVLGYVLAYFMGVLATAGLFWGGWY 110


>gi|16357049|ref|NP_443604.1| NADH dehydrogenase subunit 6 [Beryx splendens]
 gi|16267162|dbj|BAB70298.1| NADH dehydrogenase subunit 6 [Beryx splendens]
 gi|118457155|gb|ABK92201.1| NADH dehydrogenase subunit 6 [Beryx splendens]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   +   
Sbjct: 17  IAVASNPSPYFAALGLVVVAGLGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAE 76

Query: 80  DIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMV 114
               +   R   G++ ++ +G+L          + V
Sbjct: 77  PYPESWGSRSVMGYVVAYSVGVLLVSGCFWGGWYEV 112


>gi|315427290|dbj|BAJ48902.1| hypothetical protein HGMM_F09F01C38 [Candidatus Caldiarchaeum
          subterraneum]
 gi|315428205|dbj|BAJ49789.1| hypothetical protein HGMM_F20G01C38 [Candidatus Caldiarchaeum
          subterraneum]
          Length = 82

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
          + SV +L+        +F +LGA  VA++ L+VY G +I  F+F+I++ 
Sbjct: 29 VRSVIALLGYTATLGVIFFVLGAYPVAILQLLVYAGGIIALFIFVILLT 77


>gi|32709266|gb|AAP86875.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 2/120 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    ++    V +  +P ++   L+       G+    G  F++++  ++Y+G ++V 
Sbjct: 7   IFLLGLVLGLTAVASNPSPYFAALGLVVVAGMGCGILSGYGGPFLSLVLFLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            +F            E    R  L    + IL   ++        F             +
Sbjct: 66  -VFAYSAALAAEPFPETLGSRPVLAFVVVYILGGVILSSLFWGGWFEYAWVPGDEFGDYS 124


>gi|25005996|dbj|BAC23616.1| NADH dehydrogenase subunit 6 [Synbranchus marmoratus]
          Length = 174

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 36/87 (41%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             + +  +P ++   L+     A G+ +  G  F++++  +VY+G ++V F +   +   
Sbjct: 17  VAIASNPSPYFAALGLVVVSGMACGVLVSHGGPFLSLVLFLVYLGGMLVVFAYSAALAAE 76

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELI 106
               +            ++G +   ++
Sbjct: 77  PYPESWGSWSVFVYMMLYVGGVILAVL 103


>gi|333028806|ref|ZP_08456870.1| putative monovalent cation/H+ antiporter subunit A [Streptomyces
           sp. Tu6071]
 gi|332748658|gb|EGJ79099.1| putative monovalent cation/H+ antiporter subunit A [Streptomyces
           sp. Tu6071]
          Length = 987

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           + +  + + L + VR  + +V  +  +      LF++ GA  +A+    V   +++V   
Sbjct: 599 AVLTCVVALLCLGVRRRMKAVVLVGLSGYGTGLLFVVQGAPDLALTQFCVETVSMVV--- 655

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           F++++  + +   E   +   +    + +L A  I C    M
Sbjct: 656 FVLVLRRMPVHFEENYTRWRRVIRAPVALLGAAAIGCVVWIM 697


>gi|302633035|gb|ADL59811.1| NADH dehydrogenase subunit 6 [Misgurnus anguillicaudatus]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L     I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LLLIALIVGLVAVASNPAPYFAALGLVVAAGVGCGVLISHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +       +   R   G++  +F+G+       C   +
Sbjct: 67  FAYSAALAAEPFPESWGDRSVFGYVVIYFVGVGLMMKFFCGGWY 110


>gi|270267488|ref|YP_003331183.1| NADH dehydrogenase subunit 6 [Alepocephalus bairdii]
 gi|269994122|dbj|BAI50128.1| NADH dehydrogenase subunit 6 [Alepocephalus bairdii]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    I+    V +   P ++ F L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLIVGLIAVASNPAPYFAAFGLVVAAGVGCGVLVGHGGAFLSLVLFLIYLGGMLVV 66

Query: 70  FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +  +   E    R   G++ ++F+G++ A        +
Sbjct: 67  FAYSAALAAEPFPETWGDRSVIGYVVAYFVGVVLAASWFWGGWY 110


>gi|242097249|emb|CAY39926.1| NADH dehydrogenase subunit 6 [Ursus spelaeus]
          Length = 153

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +PIY    LI +     G+ L  G  F+ ++  +VY+G ++V F +   M          
Sbjct: 3   SPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEV-W 61

Query: 87  RKKRGFLGSFFIGILAAELIVC 108
              +  LG+F +G+L+  LI C
Sbjct: 62  VSNKAVLGAFIVGLLSELLIAC 83


>gi|155624803|gb|ABU24814.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   L  F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAQLLTAC 105


>gi|89257328|ref|YP_514628.1| NADH dehydrogenase subunit 6 [Rhodeus uyekii]
 gi|71979974|gb|AAZ57215.1| NADH dehydrogenase subunit 6 [Rhodeus uyekii]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L   M I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYVMFSLL-VMLILGLIAVASNPTPYFAALGLVVAAGVGCGILVGSGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F +   +       A   R   G++  + +G+  A  +    
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGTRSVLGYVMIYLVGVGLAAGLFWMG 108


>gi|241140664|gb|ACS66815.1| NADH dehydrogenase subunit 6 [Lagocephalus lunaris]
          Length = 170

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 35/98 (35%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
              ++    V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V F +
Sbjct: 8   LGLVVGMVAVASNPSPYFGALSLVVVSGFGCGVLVWHGGSFLSLVLFLIYLGGMLVVFAY 67

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
              +                    + G++    +    
Sbjct: 68  SAALAAEPYPETLGSWPVLVSMLMYFGVVVLMFVAFLG 105


>gi|119380113|gb|ABL73209.1| NADH dehydrogenase subunit 6 [Meleagris gallopavo]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 45/103 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  F+++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVVGCGWLVNLGVSFISLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G  FI ++   +++
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFIFVIYVGVVL 104


>gi|5835007|ref|NP_007067.1|ND6_10457 NADH dehydrogenase subunit 6 [Balaenoptera musculus]
 gi|730209|sp|P41300|NU6M_BALMU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|414138|emb|CAA51006.1| NADH-ubiquinone oxidoreductase subunit 6 [Balaenoptera musculus]
          Length = 175

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS   V +  +PIY    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MVTYIVFVLSIIFVISFVGVSSKPSPIYGGLGLIVGGGAGCGVVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G++   LIV 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFILGLVVESLIVI 105


>gi|288904159|ref|YP_003434427.1| NADH dehydrogenase subunit 6 [Beryx mollis]
 gi|115279600|gb|ABI85290.1| NADH dehydrogenase subunit 6 [Beryx mollis]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   +   
Sbjct: 17  IAVASNPSPYFAALGLVVVAGLGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAE 76

Query: 80  DIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMV 114
               +   R   G++ ++ +G+L          + V
Sbjct: 77  PYPESWGSRSVVGYVVAYSVGVLLVSGCFWGGWYEV 112


>gi|126215513|ref|YP_001054761.1| NADH dehydrogenase subunit 6 [Anomalurus sp. GP-2005]
 gi|118140639|emb|CAJ43823.1| NADH dehydrogenase subunit 6 [Anomalurus sp. GP-2005]
          Length = 175

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   YL S + ++S   V +  +PIY    L+       G+ L  G  F+ ++  +VY
Sbjct: 1   MLTYVIYLLSIIFVLSFVGVSSKPSPIYGGLGLVVGGGVGCGIVLGYGGSFLGLLVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +    +  +      +     LG+F + +L   ++     +
Sbjct: 61  LGGMLVVFGYT-TAMAAEEYPDSLKSNVLMLGAFVVTLLLEFMLYMWGVY 109


>gi|326909342|ref|YP_004327613.1| NADH dehydrogenase subunit 6 [Rana ishikawae]
 gi|300508176|dbj|BAJ10924.1| NADH dehydrogenase subunit 6 [Rana ishikawae]
          Length = 166

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
              ++    V +  +P Y+   L++       + +  G  F++++  ++Y+G ++V F +
Sbjct: 5   LCLLVGLLAVASNPSPYYAALGLVWGSGMGCLVLVKGGVNFLSLVLFLIYLGGMMVVFAY 64

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
              ++      A   +         IG L    ++    + V +  GE+  L   G 
Sbjct: 65  CAALVAEPYPEAWGSR-------VVIGYLVTYNVLLLILWGVLAEHGEMKVLSEGGG 114


>gi|222834571|ref|YP_002586788.1| NADH dehydrogenase subunit 6 [Eutaeniophorus festivus]
 gi|222835112|ref|YP_002586814.1| NADH dehydrogenase subunit 6 [Ataxolepis apus]
 gi|222051598|dbj|BAH15283.1| NADH dehydrogenase subunit 6 [Eutaeniophorus festivus]
 gi|222051626|dbj|BAH15309.1| NADH dehydrogenase subunit 6 [Ataxolepis apus]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +          ++    V +  +P ++   L+       GL +  G  F++++  ++Y+G
Sbjct: 2   TYLMSFLLVGLVVGLIAVASNPSPFFAALGLVVVAGLGCGLLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
            ++V  +F            E        G  FI  +   L   
Sbjct: 62  GMLV--VFAYSAALAAEPFPESWGNWSVFGQAFIYFMGVALAFW 103


>gi|148274179|ref|YP_001220615.1| hypothetical protein pAb5S9_16 [Aeromonas bestiarum]
 gi|146453410|gb|ABQ41452.1| TraG [Aeromonas bestiarum]
          Length = 837

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 2   VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGA---EFVAMIT 58
           +M + FFYL       +       +NP+    +L  +F+  + + +LL     +      
Sbjct: 237 IMTAWFFYLILICFFGAYIAYKRRQNPVLVALALGLSFLPTSVVMMLLYIFIPQIPGFAM 296

Query: 59  LVVYVGAVIVFFLFIIMMLDI 79
           L + VG  +  +L    + + 
Sbjct: 297 LAITVGGTVATYLNAGKVFNW 317


>gi|241203718|ref|YP_002974814.1| membrane-bound PQQ-dependent dehydrogenase,
           glucose/quinate/shikimate family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857608|gb|ACS55275.1| membrane-bound PQQ-dependent dehydrogenase,
           glucose/quinate/shikimate family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 779

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 37  FAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF 96
            A +  +  F+++G         +V +G   VF+LF  +M  I   +   RK        
Sbjct: 1   MAIIVTSIFFIIVGLTLSGGGLWLVTLGG-SVFYLFAGLMFLITAGLLLMRKAVALW--- 56

Query: 97  FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143
               + A L+V A  + ++    +  +L  +G  +  +G  L T + 
Sbjct: 57  ----VYAVLVVAALAWAIWEVGFDWWQLGPRGGMIILLGLWLLTPWI 99


>gi|222479145|ref|YP_002565382.1| NADH dehydrogenase-like complex, subunit J2 [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222452047|gb|ACM56312.1| NADH dehydrogenase-like complex, subunit J2 [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 119

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 13/85 (15%)

Query: 97  FIGILAAELIVCASNFMVFSAE-GELSRLVFKGNNVENIGKVLYT------------QYA 143
            +  +A  L+       V SA+ GE++      + V NIG  L+              + 
Sbjct: 12  LVPAVAVGLLFAIMALTVLSADFGEVAAFPADASIVHNIGYALFNLSEYELGSVPSEGFL 71

Query: 144 YPLEISGFILLLSMIGAIVLMLRHR 168
               I+   L +++ GAI L  R +
Sbjct: 72  AAFLIAAVALDVAVDGAIYLAKREK 96


>gi|195933704|ref|YP_002117983.1| NADH dehydrogenase subunit 6 [Echinococcus canadensis]
 gi|145207833|dbj|BAF56496.1| NADH dehydrogenase subunit 6 [Echinococcus canadensis]
 gi|145207898|dbj|BAF56556.1| NADH dehydrogenase subunit 6 [Echinococcus canadensis]
          Length = 151

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+++      F  +         T     Y V  ++ A + +   +++ G  + +++  +
Sbjct: 1   MLLEIFIVMYFCVLMFFCF----TSHCIYYCVLLVVNALLASCICYIVYGFSWYSLLLCL 56

Query: 61  VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VY+G V V F+F+ +   +    +     + G    F  G+L   L+  A   + FS 
Sbjct: 57  VYIGGVYVLFIFVSVFGPNSSFVLYRSTWELGLCVLFGFGLLVCGLVYYALIGVEFSG 114


>gi|118573113|sp|Q1X880|POLG_YEFVU RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|63147729|gb|AAY34248.1| polyprotein [Yellow fever virus]
          Length = 3412

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 3    MQSLFFYLFSFMAIISSFLVVTVRNPI-YSVFSLIFAFVNAAGLFLLLGAEFVAMITL-- 59
            M  +  ++ +   +++S +V+   +P   S  S+    +  +G  +     F+  +    
Sbjct: 2158 MTIVMLFILAG--LLTSGMVIFFMSPKGMSRMSMAMGTMAGSGYLM-----FLGGVKPTH 2210

Query: 60   VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            + YV    +   F++M++ I     +   +   +    IGIL    +V A
Sbjct: 2211 ISYV----MLIFFVLMVVIIPEPGQQRSIQDNQVAYLIIGILTLLSVVAA 2256


>gi|5835776|ref|NP_008586.1|ND6_15061 NADH dehydrogenase subunit 6 [Orycteropus afer]
 gi|4691365|emb|CAB41632.1| NADH dehydrogenase subunit 6 [Orycteropus afer]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++ S +  +      +  +PIY    LI +     GL +  G  F+ ++  +VY+G ++V
Sbjct: 6   FMLSVILAVGFVGFSSKPSPIYGGLCLIVSGGVGCGLVINFGGSFLGLMVFLVYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            F +   M   +   A       FL      ++   LI+   +
Sbjct: 66  VFGYTTAMATEEYPEAWVSDVVVFLSLCVGLMMEFGLIMWLVS 108


>gi|62184464|ref|YP_220613.1| NADH dehydrogenase subunit 6 [Salanx ariakensis]
 gi|58430885|dbj|BAD89226.1| NADH dehydrogenase subunit 6 [Salanx ariakensis]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLMGLVLGLVAVASNPAPYFAALGLVVAAGAGCGVLVGHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
           F +   +       AEP  +     S    +L   L+V  +   +     E S +V  
Sbjct: 67  FAYSAAL------AAEPYPETWGDRSVLGYVLGYLLVVMVTAGWLSGGWYESSWVVVD 118


>gi|318057952|ref|ZP_07976675.1| putative monovalent cation/H+ antiporter subunit A [Streptomyces
           sp. SA3_actG]
          Length = 987

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           + +  + + L + VR  + +V  +  +      LF++ GA  +A+    V   +++V   
Sbjct: 599 AVLTCVVALLCLGVRRRMKAVVLVGLSGYGTGLLFVVQGAPDLALTQFCVETVSMVV--- 655

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113
           F++++  + +   E   +   +    + +L A  I C    M
Sbjct: 656 FVLVLRRMPVHFEENYTRWRRVIRAPVALLGAAAIGCVVWIM 697


>gi|242610097|ref|YP_003001980.1| NADH dehydrogenase subunit 6 [Taenia multiceps]
 gi|239997762|gb|ACS37256.1| NADH dehydrogenase subunit 6 [Taenia multiceps]
          Length = 150

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MV++ L  + F  + + S    ++     Y V  +I A V+    +L+ G  + +++  +
Sbjct: 1   MVLEILVTFYFFILLLFS----LSSHCVYYCVLLVINALVSCLICYLVYGFSWYSLVFCL 56

Query: 61  VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           VYVG V + F+F+ +   +    +     +   +  F IG+L   L     N
Sbjct: 57  VYVGGVYILFIFVSVFNPNDSFAIYHKVGESSIVLCFVIGLLCMCLFYSLVN 108


>gi|195379302|ref|XP_002048419.1| GJ11362 [Drosophila virilis]
 gi|194155577|gb|EDW70761.1| GJ11362 [Drosophila virilis]
          Length = 903

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 14/126 (11%)

Query: 3   MQSLFFYLFSFMAIISSFLV--VTVRNP-----IYSVFSLIFAFVNAAGLFLLLGAEFVA 55
           M  + F++  F+ +    L+  V  R       + ++  ++     A  ++ L+    V 
Sbjct: 109 MDLIIFFVICFVLLWLFILIGSVLPRKLDLTLDV-AILFIVGFLFLAIAIYFLMYRFLVH 167

Query: 56  MITL---VVYVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCA 109
            + +   +V+  AV +  LF +M     I     AE R     LGS  +      +    
Sbjct: 168 QVEIHSYIVFEVAVTIIILFFVMYHAQTINGGRFAEMRLNDALLGSLILFHDFLIIYWLT 227

Query: 110 SNFMVF 115
             + + 
Sbjct: 228 FYWQIL 233


>gi|299829142|ref|YP_003735154.1| NADH dehydrogenase subunit 6 [Rhinochimaera pacifica]
 gi|298110941|gb|ADI57890.1| NADH dehydrogenase subunit 6 [Rhinochimaera pacifica]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 62/152 (40%), Gaps = 4/152 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRN-PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++F +   +  I   + V     P +  F L+ +     GL    G  F++ +  ++Y+G
Sbjct: 2   IYFVILMLVCFIMGLVAVASNPAPYFGAFGLVVSAAVGCGLLASHGTSFLSFVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--ELS 122
            ++V F++   +       +   +        ++  +   ++    ++ + +  G  E S
Sbjct: 62  GMLVVFVYSAALTAEPFPKSWWDRSVLINVLLYLAGVGVGVLYFYGDWNMLNWLGVDEFS 121

Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154
            L     ++     ++Y+     L ++G+ILL
Sbjct: 122 GLSLWRGDLSGT-SLMYSSGVLLLILAGWILL 152


>gi|14039352|gb|AAK53189.1| NADH dehydrogenase subunit 6 [Galaxias anomalus]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78

Query: 82  EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
             +   R   G++ ++F+G+L    +     +
Sbjct: 79  PESWGDRSVLGYVLAYFVGVLVTAGLFWGGWY 110


>gi|229924024|ref|YP_002887570.1| NADH dehydrogenase subunit 6 [Makaira mazara]
 gi|229619920|dbj|BAH58277.1| NADH dehydrogenase subunit 6 [Makaira mazara]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 40/113 (35%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   YL     ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TFIMYLILLSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F +   +           +        ++  +     +    +   S 
Sbjct: 62  GMLVVFAYSAALAAEPYPETWGSRPVVMYMVVYMVGVVLVSGLFWGGWYESSW 114


>gi|14039312|gb|AAK53169.1| NADH dehydrogenase subunit 6 [Galaxias fasciatus]
          Length = 173

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78

Query: 82  EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
             +   R   G++ ++F+G+L    +     +
Sbjct: 79  PESWGDRSVLGYVLAYFVGVLLTGGLFWGGWY 110


>gi|11499411|ref|NP_070650.1| F420H2:quinone oxidoreductase, 16.5 kDa subunit, putative
           [Archaeoglobus fulgidus DSM 4304]
 gi|24638412|sp|O28452|Y1823_ARCFU RecName: Full=Uncharacterized protein AF_1823
 gi|2648721|gb|AAB89426.1| F420H2:quinone oxidoreductase, 16.5 kDa subunit, putative
           [Archaeoglobus fulgidus DSM 4304]
          Length = 154

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +L   +    A+ SS  V+  ++  Y+   +    +  A ++     + V +I  +
Sbjct: 1   MNIDTLIIAVAGLFAVASSIGVLLTKDNFYAALYMSVTMLFVAAIYAAFNIQPVVVIIAL 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           ++VGAV +    + + +         RK   F     I + A   +  AS
Sbjct: 61  IFVGAVGI----VTVAIAATYRAGVSRKVNIFWVVPVIVVFAILALAYAS 106


>gi|37596557|gb|AAQ95039.1| NADH dehydrogenase subunit 6 [Heteromunia pectoralis]
          Length = 159

 Score = 34.6 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 32/53 (60%)

Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          +  +P Y V  L+ A V   G  + LG  FV+++ ++VY+G ++V F++ + +
Sbjct: 21 SNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL 73


>gi|14010677|ref|NP_114358.1| NADH dehydrogenase subunit 6 [Nycticebus coucang]
 gi|13940443|emb|CAC38001.1| NADH subunit 6 [Nycticebus coucang]
          Length = 175

 Score = 34.6 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L S + ++      +  +PIY  F LI +     G+ +  G  F+ ++  +VY+G ++V 
Sbjct: 7   LLSVLFVLGFVGFSSKPSPIYGGFGLIISGGVGCGIVMGFGGSFMGLMVFLVYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           F +   M   +   +      G LG+  +G+    ++V  + 
Sbjct: 67  FGYTTAMATEEYPESWGSSV-GILGALVLGMAVEMILVLLAG 107


>gi|25057343|ref|NP_739800.1| NADH dehydrogenase subunit 6 [Melanotaenia lacustris]
 gi|25005717|dbj|BAC23370.1| NADH dehydrogenase subunit 6 [Melanotaenia lacustris]
          Length = 173

 Score = 34.6 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 6   LFFYLFSFM--AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           + F++FS +   ++    V +  +P ++   L+       G+ +  G  F+++I  ++Y+
Sbjct: 1   MVFFMFSLLFGLVLGLAAVASNPSPYFAALGLVVVAGTGFGVLVGHGGSFLSLILFLIYL 60

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           G ++V  +F            E       LG   + +L   ++        +      + 
Sbjct: 61  GGMLV--VFAYSAALAAEPYPEGWGSWPVLGMMLVYLLGVGVVAGGFWGGWYEGSWISAD 118

Query: 124 LVFKGN 129
            + + +
Sbjct: 119 ELSEVS 124


>gi|109689677|ref|YP_659549.1| NADH dehydrogenase subunit 6 [Squalogadus modificatus]
 gi|109452347|dbj|BAE96382.1| NADH dehydrogenase subunit 6 [Squalogadus modificatus]
          Length = 173

 Score = 34.6 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 35/100 (35%)

Query: 13  FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
              I     V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +
Sbjct: 10  IGVIFGVISVASNPSPYFAALGLVLLAGVGCGILIGHGGSFLSLVLFLIYLGGMLVVFAY 69

Query: 73  IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
              +       A            +  ++   L      +
Sbjct: 70  CAALAAEPYPEAWGEWSILGSVLGYFSLVLGALFWFVGGW 109


>gi|53686514|ref|YP_097126.1| NADH dehydrogenase subunit 6 [Plethodon petraeus]
 gi|51979895|gb|AAU20563.1| NADH dehydrogenase subunit 6 [Plethodon petraeus]
          Length = 171

 Score = 34.6 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            II   ++ +  +P ++   L+   V   G+ + +G  F++++ +++Y+G ++V F +  
Sbjct: 12  LIIGFIIMASNPSPYFAALGLVMGAVCGCGILVSVGVSFLSLVLMLIYLGGMLVVFAYAA 71

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            +        +       L    +  +   + + A + ++F  
Sbjct: 72  SLAA--ESYPKLWTNWFVLMYAIMVCVGGFIYILAGDVLIFDG 112


>gi|255077699|gb|ACU00337.1| NADH dehydrogenase subunit 6 [Siren intermedia]
          Length = 171

 Score = 34.6 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 54/138 (39%), Gaps = 1/138 (0%)

Query: 11  FSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
            S + +    + V+   +P ++ F L+ + V+   + + LG  F++++ ++VY+G ++V 
Sbjct: 7   LSVLGLFVGLIAVSANPSPYFAAFGLVVSAVSGCLMLVFLGISFLSLVLMLVYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
           F +   +       A            +  +L     +     +      +L+  +  GN
Sbjct: 67  FAYSASLAADPYPNAWGDLSVVLYMIMYFLVLIFMYFINFDFGIEVIFSWDLTCFLGIGN 126

Query: 130 NVENIGKVLYTQYAYPLE 147
           +   +G++          
Sbjct: 127 DWGGVGEMYLGGGLLLFI 144


>gi|197311082|ref|YP_002154489.1| NADH dehydrogenase subunit 6 [Tylochromis polylepis]
 gi|197304637|dbj|BAG69561.1| NADH dehydrogenase subunit 6 [Tylochromis polylepis]
          Length = 173

 Score = 34.6 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             ++F F  ++    V +  +P ++   L+       G+ +  G  F+++I  ++Y+G +
Sbjct: 4   IMFMFLFGLVLGLAAVASNPSPYFAALGLVAVAGMGCGVLVGHGGSFLSLILFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   +       AEP  +          +    + VC +    +S   E + +  
Sbjct: 64  LVVFAYSAAL------AAEPYPESWGSWPVLGAMTVYVVGVCGAAGFFWSGWYEGTWVSA 117

Query: 127 K 127
            
Sbjct: 118 D 118


>gi|38639894|ref|NP_943615.1| NADH dehydrogenase subunit 6 [Erpetoichthys calabaricus]
 gi|38304769|gb|AAR16114.1| NADH dehydrogenase subunit 6 [Erpetoichthys calabaricus]
          Length = 167

 Score = 34.6 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 47/110 (42%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           +   +FS M +IS   V +  +P ++   L+       G+    G  F++MI  ++Y+G 
Sbjct: 2   VMMIVFSVMFLISLIAVASNPSPYFAALGLMIGAGVGCGMLTQFGMTFLSMILFLIYLGG 61

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           ++V F +   +       A    +       ++ ++    ++  ++F  F
Sbjct: 62  MLVVFAYSAALAAEPYPSAWGSLEVFSYVVGYLMLVVVMWMLLVNDFGAF 111


>gi|21492456|ref|NP_659336.1| NADH dehydrogenase subunit 6 [Lepus europaeus]
 gi|21425405|emb|CAD13292.1| NADH dehydrogenase subunit 6 [Lepus europaeus]
          Length = 174

 Score = 34.6 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +L S M +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y+G ++V
Sbjct: 6   FLLSVMFVIGFVGFASKPSPIYGGLGLIVSGGVGCGIILSFGGSFLGLMMFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            F +   M   +                   +L A L++  +
Sbjct: 66  VFGYTTAMATEEYPETWGSNIMILSMLVLGVLLEAGLVMFMA 107


>gi|116734764|ref|YP_842398.1| NADH dehydrogenase subunit 6 [Micrastur gilvicollis]
 gi|109676656|gb|ABG37745.1| NADH dehydrogenase subunit 6 [Micrastur gilvicollis]
          Length = 172

 Score = 34.6 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F        ++ +  V +  +P Y V  L+   V   G  + LG  F++++  +VY+G
Sbjct: 2  TYFVIFLGVCFVLGALAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVSFISLVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98
           ++V F++ + +       A         G  FI
Sbjct: 62 GMLVVFVYSVSLAADPFPEAWVDWHVVVYGMGFI 95


>gi|227502037|ref|ZP_03932086.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A
           [Corynebacterium accolens ATCC 49725]
 gi|227077192|gb|EEI15155.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A
           [Corynebacterium accolens ATCC 49725]
          Length = 1002

 Score = 34.6 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 1/110 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + + + ++++       N + +V  +     + + +F + GA  +A+  L+     ++V 
Sbjct: 611 VAAIIMMVAAIAATVTDNRLSAVIIVGITGYSLSFVFAIHGAPDLALTQLLTET-IIMVL 669

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           F+ ++  +    E  +  K         +G      IV        SAE 
Sbjct: 670 FMLVLRRIPASTEWKQDPKMGRLRAWLSVGTGLTVTIVAMFAINARSAEP 719


>gi|192293720|ref|YP_001994443.1| NADH dehydrogenase subunit 6 [Bathytroctes microlepis]
 gi|190715126|dbj|BAG49369.1| NADH dehydrogenase subunit 6 [Bathytroctes microlepis]
          Length = 173

 Score = 34.6 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    I+    V +   P ++ F L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLLGLIVGLIAVASNPAPYFAAFGLVVAAGVGCGVLVGHGGAFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +       +   R   G++ ++ +G++ A        +
Sbjct: 67  FAYSAALAAEPFPESWGDRSVAGYVVAYLVGVMLAAGWFWGGWY 110


>gi|14193057|ref|NP_115847.1| NADH dehydrogenase subunit 6 [Iguana iguana]
 gi|14161125|emb|CAC37094.2| NADH dehydrogenase subunit 6 [Iguana iguana]
          Length = 174

 Score = 34.6 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61
           M    F LF    ++   + V    +P +    L+ +     G+ +  G  FV+++  ++
Sbjct: 1   MAYFLFILF--FCLVGGLMAVASNPSPYFGAAGLVVSAAVGCGVLVGFGGSFVSLVLFLI 58

Query: 62  YVGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEG 119
           Y+G ++V F + + +           +  G   +G  F+  +   L+     F  +   G
Sbjct: 59  YLGGMLVVFAYSVALASEPYPETWGNRSVGLYLVGYLFLIFVLWGLLGGEWGFSGYGLGG 118


>gi|107991016|ref|YP_626542.1| NADH dehydrogenase subunit 6 [Echinococcus granulosus]
 gi|14009623|gb|AAK51687.1| NADH dehydrogenase subunit 6 [Echinococcus granulosus]
          Length = 151

 Score = 34.6 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 5/118 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+++      F  + +       T     Y V  ++ A + +   +L+ G  + +++  +
Sbjct: 1   MLLEVFIVMYFCVLVLFCF----TSHCIYYCVMLVVNALLASCICYLVYGFSWYSLLLCL 56

Query: 61  VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVG V V F+F+ +   + +  +     + G    F  G+    LI        FS 
Sbjct: 57  VYVGGVYVLFIFVSVFSPNSNFVLYYSVWEVGICLWFGFGLFICVLIYYLLVGSEFSG 114


>gi|242624423|ref|YP_003002337.1| NADH dehydrogenase subunit 6 [Branchiostegus argentatus]
 gi|193875971|gb|ACF24639.1| NADH dehydrogenase subunit 6 [Branchiostegus argentatus]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V    +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VACNPSPYFAALGLVGVAGLGCGVLVCHGGSFLSLVLFLIYLGGMLVVFAYTAALAAEPF 78

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
                  +    G  ++G +   +      +   S 
Sbjct: 79  PEGWGSGRVMVAGVVYMGGVLWSMYYAFGQWHEASW 114


>gi|222836329|ref|YP_002586840.1| NADH dehydrogenase subunit 6 [Procetichthys kreffti]
 gi|222051528|dbj|BAH15218.1| NADH dehydrogenase subunit 6 [Procetichthys kreffti]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 39/116 (33%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF F  +     V +  +P ++   L+       G+    G  F++++  ++Y+G
Sbjct: 2   TYIMSLFLFGLVFGLVAVASNPSPYFAALGLVVVAGLGCGVLAGHGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
            ++V F +   +           +        ++  +         N+   S    
Sbjct: 62  GMLVVFAYSAALAAEPYPEGWGNRSVLVYVVVYLVGVVLVSFYFWGNWYEASWVPS 117


>gi|197253945|ref|YP_002149689.1| NADH dehydrogenase subunit 6 [Pseudopungtungia nigra]
 gi|171676005|gb|ACB49315.1| NADH dehydrogenase subunit 6 [Pseudopungtungia nigra]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGVLIGCGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112
           +G ++V F +   +       A   R   G++  + +G++ A  +     +
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGSRAVAGYVLIYLVGVILAAGLFWGEWY 110


>gi|253960489|dbj|BAH84969.1| NADH dehydrogenase subunit 6 [Oryzias celebensis]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YLF    ++    + +  +P ++   L+       G+    G  F+++I  ++Y+G ++V
Sbjct: 6   YLFIMGLVLGLAAIASNPSPYFAALGLVLVAGMGCGMLAGHGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L   ++ I+          +   S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSLLMMLYLFIVGLMGSYLCEGWFEGSW 114


>gi|227122225|gb|ACP19601.1| NADH dehydrogenase subunit 6 [Callicebus donacophilus]
          Length = 180

 Score = 34.6 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 1/117 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F   S M ++      +  +PIY    L+F+      + L LG  +V ++  ++Y
Sbjct: 1   MTYVLFS-LSIMLVMGFMGFSSKPSPIYGGLVLVFSGAVGCAITLYLGGSYVGLMVFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
           +G ++V F +   M   +   +               I+   ++       + + EG
Sbjct: 60  LGGMMVVFGYTAAMAIDEHPESWLSSMDILGTMLMGLIMEFTMVFLLGGDPIKTVEG 116


>gi|254409466|ref|ZP_05023247.1| dolichyl-phosphate-mannose-protein mannosyltransferase [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183463|gb|EDX78446.1| dolichyl-phosphate-mannose-protein mannosyltransferase [Microcoleus
           chthonoplastes PCC 7420]
          Length = 963

 Score = 34.6 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 19/124 (15%)

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA---SNFMVFSAEG---- 119
            +FFLFI ++    I     R+  G L    +G+L + L+      +N+++    G    
Sbjct: 245 ALFFLFIPIV--WVIVGTIRRRYWGRLVQLIVGLLVSGLVFAPWYRTNWLLILTSGKRAT 302

Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI---KR 173
               ++      N +E    + Y +   P  +S  +LL+ ++G ++L  R +  +   +R
Sbjct: 303 LDSAIAEGDPALNTLEA--WLYYGK-ILPFLVSWVLLLVPIVG-LILYWRKKERVWGRER 358

Query: 174 QDIS 177
           +D+ 
Sbjct: 359 EDVF 362


>gi|134303115|ref|YP_001122872.1| NADH dehydrogenase subunit 6 [Macrochelys temminckii]
 gi|116739705|gb|ABK20577.1| NADH dehydrogenase subunit 6 [Macrochelys temminckii]
          Length = 176

 Score = 34.6 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 38/88 (43%)

Query: 27  NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86
           +P Y V SL+    +   + +++G  FV+++  ++Y+G ++V F +   ++     V   
Sbjct: 24  SPYYGVLSLVLGAASGCAVLVVMGGSFVSLVLFLIYLGGMLVLFAYSAALVAEPRPVGFG 83

Query: 87  RKKRGFLGSFFIGILAAELIVCASNFMV 114
              R       I +L    +     ++ 
Sbjct: 84  LDYRESAFYVVIYVLCIVFVGVCYCWVW 111


>gi|73962215|ref|XP_547676.2| PREDICTED: similar to CG8486-PA, isoform A [Canis familiaris]
          Length = 2714

 Score = 34.6 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 13/127 (10%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMIT--LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92
           L+ A      +++  G  F       +V+Y    +V FLF + +  +  E    R  + F
Sbjct: 664 LVVAMFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYE-WWRRILKYF 722

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK------VLYTQYAYPL 146
             S  I  +   + +    F  F    + +    K   +E++G        L+T+   P 
Sbjct: 723 WMSVVIYTMLVLIFIYTYQFENFPGLWQ-NMTGLKKEKLEDLGLKQFTVAELFTRIFIP- 780

Query: 147 EISGFIL 153
             + F+L
Sbjct: 781 --TSFLL 785


>gi|307589139|gb|ADN64335.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 1/115 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLIAVASNPTPYFAALGLVVAAGVGCGILVGYGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +       A   +        ++  +     +    +   S 
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGSRSVVGYVLVYLLGVVLAAGLFWGGWYEGSW 114


>gi|307589137|gb|ADN64334.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 1/115 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLIAVASNPTPYFAALGLVVAAGVGCGILVGYGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +       A   +        ++  +     +    +   S 
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGSRSVVGYVLVYLLGVVLAAGLFWGGWYEGSW 114


>gi|52221036|ref|YP_086891.1| NADH dehydrogenase subunit 6 [Geocalamus acutus]
 gi|47026724|gb|AAT08540.1| NADH dehydrogenase subunit 6 [Geocalamus acutus]
          Length = 178

 Score = 34.6 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          +   YL   M ++S   V     P +    L+ A + +  +  LLG  F++++ L++Y+G
Sbjct: 2  AYLMYLLGLMFVVSIMGVAMHPLPQFGAGGLVVATLFSCAMLALLGGSFISIVLLLIYLG 61

Query: 65 AVIVFFLFIIMM 76
           ++V F + + +
Sbjct: 62 GMLVVFAYSVAL 73


>gi|66800793|ref|XP_629322.1| hypothetical protein DDB_G0293176 [Dictyostelium discoideum AX4]
 gi|60462738|gb|EAL60940.1| hypothetical protein DDB_G0293176 [Dictyostelium discoideum AX4]
          Length = 1692

 Score = 34.6 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 8    FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLL----------GAEFVAMI 57
            FY    +AII    ++     ++ +  +IF F+    ++  L           A+++ ++
Sbjct: 1428 FYQLIIVAIIRFKKIIHRFELVHLLLFMIFVFLLVRTIYFFLLPSGKLSNSAVADYILVV 1487

Query: 58   TLVVYVGA----VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
                +  +    +IV +  I++++  +   +    +   +      I+   L+     F
Sbjct: 1488 LPTFFYFSCFTIIIVLWYVIVVLVLKNNSASNFSNRLFSMVGLVNFIIYLLLVAIVLVF 1546


>gi|229929323|ref|YP_002887609.1| NADH dehydrogenase subunit 6 [Rhinoceros sondaicus]
 gi|229473109|gb|ACQ73083.1| NADH dehydrogenase subunit 6 [Rhinoceros sondaicus]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +IS     +  +PIY    L+ +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMMYIGFILSIVFVISFVGFSSKPSPIYGGLVLVMSGGIGCGIVMSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F +   M       A        L +F +G+L   ++V   
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEA-WVSNATVLSAFILGVLMEVMLVLYM 107


>gi|155624671|gb|ABU24715.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   L  F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105


>gi|32347361|gb|AAP33905.1| NADH dehydrogenase subunit 6 [Aotus trivirgatus]
 gi|227122197|gb|ACP19575.1| NADH dehydrogenase subunit 6 [Aotus lemurinus]
          Length = 177

 Score = 34.6 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +   +L S + ++      +  +PIY    LIF+      + L  G  ++ ++  ++Y+G
Sbjct: 2   TYALFLLSIILVMGFVGFSSKPSPIYGGLVLIFSGAVGCMITLYFGGSYMGLMVFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            ++V F +   M  ID            LG F +G++    +V    
Sbjct: 62  GMMVVFGYTAAM-AIDEHPETWVSSTDILGIFMLGLMMEMTMVALLG 107


>gi|74315089|ref|YP_313653.1| NADH dehydrogenase subunit 6 [Merlangius merlangus]
 gi|66802169|gb|AAY56620.1| NADH dehydrogenase subunit 6 [Merlangius merlangus]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            ++    V +  +P ++   L+        + +  G  F++++  ++Y+G ++V F +  
Sbjct: 12  MVLGVISVASNPSPYFAALGLVLVAGVGCVVLMGHGGSFLSLVLFLIYLGGMLVVFAYCA 71

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
            +       AEP  +     S    +L   L+V  +    +    E   +   
Sbjct: 72  AL------AAEPYPEAWGEWSVLGAVLGYLLLVVGAGSWFWGGWYEGMWVPVD 118


>gi|256427151|ref|YP_003126925.1| NADH dehydrogenase subunit 6 [Platax orbicularis]
 gi|256353303|dbj|BAH97816.1| NADH dehydrogenase subunit 6 [Platax orbicularis]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ +  G  F+++I  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVVVAGLGCGVLVGHGGSFLSLILFLIYLGGMLVVFAYSAAL----- 73

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
             AEP  +     S    +LA  ++V   + +      E+S +   
Sbjct: 74  -AAEPYPESWGDWSVGGSMLAYAVVVALVSGLFLGGWYEVSWVPAD 118


>gi|291612272|ref|YP_003540706.1| NADH dehydrogenase subunit 6 [Hypsiglena chlorophaea chlorophaea]
 gi|189164570|gb|ACD77499.1| NADH dehydrogenase subunit 6 [Hypsiglena chlorophaea chlorophaea]
          Length = 169

 Score = 34.6 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            F +     I     +     P   V +L+          ++LG  F A++  +VY+G +
Sbjct: 4   LFSVVMVFVIFGVLALGVAVVPYQGVVALMGVSFICCVFMVMLGRTFAALVMYIVYLGGL 63

Query: 67  IVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123
           IV F + + +   +++   V   +    FL   F+G L   L+      +V+    +L  
Sbjct: 64  IVVFSYCVSVEKDEVDDCGVVGFKYFVIFLFVLFVGFLWWVLVGEVGGLLVYVNWEDLVC 123

Query: 124 LVFKGNNV 131
           L   G++V
Sbjct: 124 LEVNGSSV 131


>gi|220908918|ref|YP_002484229.1| hypothetical protein Cyan7425_3547 [Cyanothece sp. PCC 7425]
 gi|219865529|gb|ACL45868.1| putative multicomponent Na+:H+ antiporter subunit B [Cyanothece
          sp. PCC 7425]
          Length = 198

 Score = 34.6 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          Y+ + +  +++ +V+   NP +++         AA  + +LGA  VA+   +V  G ++ 
Sbjct: 6  YMITALLPLAAVMVMFQTNPYHALVMRGILGAVAALTYSVLGAPDVALTEALV--GTLLA 63

Query: 69 FFLFII 74
            L+ +
Sbjct: 64 VLLYAV 69


>gi|165932533|ref|YP_001650773.1| NADH dehydrogenase subunit 6 [Solenostomus cyanopterus]
 gi|154758748|dbj|BAF74897.1| NADH dehydrogenase subunit 6 [Solenostomus cyanopterus]
          Length = 174

 Score = 34.6 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            ++    V +  +P ++   L+    +   L L  G  F++++  ++Y+G ++V F +  
Sbjct: 12  ILVGFIAVASNPSPYFAALGLVVVSGSGCALLLDQGGSFLSLVLFLIYLGGMLVVFAYSA 71

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134
            +       A      G   + ++ + +A ++       +    G     V  G + E I
Sbjct: 72  ALSAEPFPSAWGMWGVGLNVAAYLFMFSAMVV----GLRIMGLGGSEVSQVVLGGSTEVI 127


>gi|157736269|ref|YP_001491303.1| NADH dehydrogenase subunit 6 [Parapristipoma trilineatum]
 gi|139000635|dbj|BAF51827.1| NADH dehydrogenase subunit 6 [Parapristipoma trilineatum]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 39/100 (39%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   +   
Sbjct: 17  IAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAE 76

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
               +   +        ++  +A    +C   +   S  G
Sbjct: 77  PYPESWGSRPVAVSMLVYMVGVALISGLCWGGWYESSWIG 116


>gi|109689565|ref|YP_659510.1| NADH dehydrogenase subunit 6 [Pygathrix nemaeus]
 gi|88174314|gb|ABD39316.1| NADH dehydrogenase subunit 6 [Pygathrix nemaeus]
 gi|325652679|gb|ADZ37175.1| NADH dehydrogenase subunit 6 [Pygathrix nemaeus]
          Length = 174

 Score = 34.6 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L S + ++      +  +PIY   +L+ + V    + L  G  ++ ++  ++Y
Sbjct: 1   MSYILF-LLSVLLVMGFVGFSSKPSPIYGGLALVVSGVIGCAIILSYGGTYMGLMMFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +    + I+            LGSF +G+     +V  
Sbjct: 60  LGGMMVVFGYT-TAMAIEEYPEAWVSGFEVLGSFLVGLAMEVYLVLW 105


>gi|32402565|ref|NP_861513.1| NADH dehydrogenase subunit 6 [Elephantulus sp. VB001]
 gi|32188020|dbj|BAC78436.1| NADH dehydrogenase subunit 6 [Elephantulus sp. VB001]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 18  SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77
            +  V +  +PI+    LI +     GL +  G  F+ ++  +VY+G ++V F +   M 
Sbjct: 15  GAVGVSSKPSPIFGGVGLILSGGVGCGLIVCSGGSFLGLMVFLVYLGGMLVVFGYTTAMA 74

Query: 78  DIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
             +   A    K   LG   +G L   LI+   
Sbjct: 75  TEEYPEAWGSNK-VILGGMLVGALFELLIMVWL 106


>gi|25057667|ref|NP_739917.1| NADH dehydrogenase subunit 6 [Ostichthys japonicus]
 gi|25005885|dbj|BAC23513.1| NADH dehydrogenase subunit 6 [Ostichthys japonicus]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVGVAGLGCGVLVGYGGPFLSLVLFLIYLGGMLVVFAYSAAL----- 73

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
             AEP  +     S    +LA  + V  ++   +    E S +   
Sbjct: 74  -AAEPYPESWGSRSVVGYVLAYLVGVLVASSYFWGGWYEASWVPAD 118


>gi|323690844|ref|YP_004243720.1| NADH dehydrogenase subunit 6 [Meleagris gallopavo]
 gi|323366907|gb|ADX43876.1| NADH dehydrogenase subunit 6 [Meleagris gallopavo]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 45/103 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  F+++   +VY+G
Sbjct: 2   TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVVGCGWLVNLGVSFISLALFMVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            ++V F++ + +       A    +    G  FI ++   +++
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFIFVIYVGVVL 104


>gi|166091635|ref|YP_001654977.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|165935042|gb|ABY74765.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589107|gb|ADN64319.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589109|gb|ADN64320.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589111|gb|ADN64321.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589113|gb|ADN64322.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589115|gb|ADN64323.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589117|gb|ADN64324.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589119|gb|ADN64325.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589121|gb|ADN64326.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589123|gb|ADN64327.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589125|gb|ADN64328.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589127|gb|ADN64329.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589129|gb|ADN64330.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589131|gb|ADN64331.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589133|gb|ADN64332.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589135|gb|ADN64333.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589141|gb|ADN64336.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589143|gb|ADN64337.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589145|gb|ADN64338.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589147|gb|ADN64339.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589149|gb|ADN64340.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589151|gb|ADN64341.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589153|gb|ADN64342.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589155|gb|ADN64343.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589157|gb|ADN64344.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589159|gb|ADN64345.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589163|gb|ADN64347.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589165|gb|ADN64348.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589167|gb|ADN64349.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589169|gb|ADN64350.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589171|gb|ADN64351.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589173|gb|ADN64352.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589175|gb|ADN64353.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589177|gb|ADN64354.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589179|gb|ADN64355.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589181|gb|ADN64356.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589183|gb|ADN64357.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589185|gb|ADN64358.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589187|gb|ADN64359.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589189|gb|ADN64360.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589191|gb|ADN64361.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589193|gb|ADN64362.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589195|gb|ADN64363.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589197|gb|ADN64364.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589199|gb|ADN64365.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589201|gb|ADN64366.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589203|gb|ADN64367.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589205|gb|ADN64368.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589207|gb|ADN64369.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589209|gb|ADN64370.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589211|gb|ADN64371.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589213|gb|ADN64372.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589215|gb|ADN64373.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589217|gb|ADN64374.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589219|gb|ADN64375.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589221|gb|ADN64376.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589223|gb|ADN64377.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|307589225|gb|ADN64378.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
 gi|322506178|gb|ADX01633.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 1/115 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLMAL-VVGLIAVASNPTPYFAALGLVVAAGVGCGILVGYGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +       A   +        ++  +     +    +   S 
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGSRSVVGYVLVYLLGVVLAAGLFWGGWYEGSW 114


>gi|154818480|gb|ABS87692.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra]
 gi|154818484|gb|ABS87695.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra]
 gi|154818488|gb|ABS87698.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra]
 gi|154818506|gb|ABS87711.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra]
 gi|154818514|gb|ABS87717.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra]
 gi|154818518|gb|ABS87720.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818526|gb|ABS87726.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818530|gb|ABS87729.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818534|gb|ABS87732.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818538|gb|ABS87735.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818542|gb|ABS87738.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata]
 gi|154818570|gb|ABS87759.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818574|gb|ABS87762.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818578|gb|ABS87765.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818582|gb|ABS87768.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818593|gb|ABS87776.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818597|gb|ABS87779.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818605|gb|ABS87785.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818609|gb|ABS87788.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818613|gb|ABS87791.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818617|gb|ABS87794.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818621|gb|ABS87797.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818625|gb|ABS87800.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818629|gb|ABS87803.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818633|gb|ABS87806.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818637|gb|ABS87809.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818641|gb|ABS87812.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818649|gb|ABS87818.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|154818653|gb|ABS87821.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|155624348|gb|ABU24473.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624352|gb|ABU24476.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624356|gb|ABU24479.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624360|gb|ABU24482.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624364|gb|ABU24485.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624368|gb|ABU24488.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624372|gb|ABU24491.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624376|gb|ABU24494.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624384|gb|ABU24500.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624388|gb|ABU24503.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624392|gb|ABU24506.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624396|gb|ABU24509.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624400|gb|ABU24512.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624404|gb|ABU24515.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624408|gb|ABU24518.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624412|gb|ABU24521.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624416|gb|ABU24524.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624420|gb|ABU24527.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624424|gb|ABU24530.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624428|gb|ABU24533.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624432|gb|ABU24536.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624436|gb|ABU24539.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624440|gb|ABU24542.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624444|gb|ABU24545.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624448|gb|ABU24548.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624456|gb|ABU24554.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624464|gb|ABU24560.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624468|gb|ABU24563.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624472|gb|ABU24566.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624476|gb|ABU24569.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624480|gb|ABU24572.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624484|gb|ABU24575.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624488|gb|ABU24578.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624492|gb|ABU24581.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624496|gb|ABU24584.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624500|gb|ABU24587.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624504|gb|ABU24590.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624508|gb|ABU24593.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624516|gb|ABU24599.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624524|gb|ABU24605.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624528|gb|ABU24608.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624536|gb|ABU24614.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624540|gb|ABU24617.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624544|gb|ABU24620.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624548|gb|ABU24623.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624555|gb|ABU24628.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624559|gb|ABU24631.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624575|gb|ABU24643.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624595|gb|ABU24658.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624611|gb|ABU24670.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624615|gb|ABU24673.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624627|gb|ABU24682.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624631|gb|ABU24685.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624635|gb|ABU24688.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624639|gb|ABU24691.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624647|gb|ABU24697.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624655|gb|ABU24703.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624659|gb|ABU24706.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624663|gb|ABU24709.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624667|gb|ABU24712.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624675|gb|ABU24718.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624679|gb|ABU24721.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624687|gb|ABU24727.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624695|gb|ABU24733.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624703|gb|ABU24739.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624711|gb|ABU24745.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624715|gb|ABU24748.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624719|gb|ABU24751.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624723|gb|ABU24754.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624727|gb|ABU24757.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624735|gb|ABU24763.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624739|gb|ABU24766.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624743|gb|ABU24769.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624747|gb|ABU24772.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624751|gb|ABU24775.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624755|gb|ABU24778.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624763|gb|ABU24784.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624767|gb|ABU24787.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624771|gb|ABU24790.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624775|gb|ABU24793.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624779|gb|ABU24796.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624783|gb|ABU24799.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624787|gb|ABU24802.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624791|gb|ABU24805.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624811|gb|ABU24820.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   L  F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105


>gi|154818546|gb|ABS87741.1| NADH dehydrogenase subunit 6 [Felis margarita]
 gi|154818550|gb|ABS87744.1| NADH dehydrogenase subunit 6 [Felis margarita]
 gi|154818554|gb|ABS87747.1| NADH dehydrogenase subunit 6 [Felis margarita]
 gi|154818558|gb|ABS87750.1| NADH dehydrogenase subunit 6 [Felis margarita]
 gi|154818645|gb|ABS87815.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
 gi|155624512|gb|ABU24596.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624571|gb|ABU24640.1| NADH dehydrogenase subunit 6 [Felis silvestris]
 gi|155624731|gb|ABU24760.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   L  F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105


>gi|109689607|ref|YP_659445.1| NADH dehydrogenase subunit 6 [Semnopithecus entellus]
 gi|88174244|gb|ABD39251.1| NADH dehydrogenase subunit 6 [Semnopithecus entellus]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +L S + I+      +  +PIY   +LI + +    + L  G  ++ ++  ++Y+G ++V
Sbjct: 6   FLLSVLLIMGFVGFSSKPSPIYGGLALIVSGIVGCVIILNYGGTYMGLMMFLIYLGGMMV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
            F +    + I+            LGS  +G+     +V  
Sbjct: 66  VFGYT-TAMAIEEYPETWVSGFEVLGSLLVGLAMEVGLVLW 105


>gi|288903434|ref|YP_003434154.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709335|gb|AAP86921.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|226346390|gb|ACO49646.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 2/120 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    ++    V +  +P ++   L+       G+    G  F++++  ++Y+G ++V 
Sbjct: 7   IFLLGLVLGLTAVASNPSPYFAALGLVVVAGMGCGILSGYGGPFLSLVLFLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            +F            E    R  L    + IL   ++        F             +
Sbjct: 66  -VFAYSAALAAEPFPETLGSRSVLAFMVVYILGGVILSSLFWGGWFEYAWVPGDEFGDYS 124


>gi|295065690|ref|YP_003587632.1| NADH dehydrogenase subunit 6 [Oreochromis sp. 'red tilapia']
 gi|294679499|gb|ADF29543.1| NADH dehydrogenase subunit 6 [Oreochromis sp. 'red tilapia']
          Length = 173

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++F F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V
Sbjct: 6   FMFLFGLVLGLAAVASNPSPYFAALGLVAVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNF 112
            F +   +               G + ++ +G+ AA  +     +
Sbjct: 66  VFAYSAALAAEPYPEGWGSWPVLGVMVAYLVGVCAAAGLFWGGWY 110


>gi|219849785|ref|YP_002464218.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485]
 gi|219544044|gb|ACL25782.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485]
          Length = 790

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 5   SLFFY--LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
            L FY  L + +  I     +  R  + ++ ++       + LF+L  A  +A+  L++ 
Sbjct: 598 QLQFYEILAASLIPIGVIATIRARTRLGAIIAVGVVGAMVSLLFVLFSAPDLALTQLLIE 657

Query: 63  V-GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
           V   V +  +F ++ +  +   A   ++R  + +  +G+L   L++  +    F++    
Sbjct: 658 VLSTVFLLLVFSVLPVRFESFSAAWVRRRDAIIATVMGVLMGGLVLAIATNTSFASLAPF 717


>gi|14039391|gb|AAK53208.1| NADH dehydrogenase subunit 6 [Galaxias gollumoides]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 28  PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE-P 86
           P ++   L+ A     G+ +  G  F++++  ++Y+G ++V F +   +       +   
Sbjct: 25  PYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPESWGD 84

Query: 87  RKKRGFLGSFFIGILAAELIVCASNF 112
           R   G++ ++F+G+L    +     +
Sbjct: 85  RSVLGYVLAYFVGVLVIAGLFWGGWY 110


>gi|328672364|ref|YP_004362953.1| NAD(P)H-quinone oxidoreductase subunit 6 [Pichia pastoris CBS 7435]
 gi|308152313|emb|CBI83578.2| NU6M (ND6) subunit of mitochondrial NADH:ubiquinone oxidoreductase
           (complex I) [Pichia pastoris]
 gi|328354783|emb|CCA41179.1| NAD(P)H-quinone oxidoreductase subunit 6 [Pichia pastoris CBS 7435]
          Length = 161

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M ++ L   +  F ++ISS       N   S+  L+   +          ++  A++  +
Sbjct: 1   MNLEILDLSILGFYSLISS-------NSFESIAILVATIMPVITELWYNYSQLFALLYTL 53

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-VFSAEG 119
           +YVGAV++ F+FI+ +++   E          L    +     +     +++  V+  + 
Sbjct: 54  IYVGAVVILFVFILSVINEKEEYEYEYSGLFILILVLLLDDLDDNESNDNDYNNVYITDY 113

Query: 120 ELSRLVFKGNNVENIGKVLYTQY 142
                 +  +++  IG +L+T+Y
Sbjct: 114 ADWFNNYNESDLSVIGNLLFTEY 136


>gi|192288403|ref|YP_001994456.1| NADH dehydrogenase subunit 6 [Gonorynchus abbreviatus]
 gi|190715140|dbj|BAG49382.1| NADH dehydrogenase subunit 6 [Gonorynchus abbreviatus]
          Length = 174

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 39/115 (33%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +    +     ++    V +   P Y+   L+ A     G+    G  F+ ++  ++Y
Sbjct: 1   MITYLMCVLLCAFVVGLVAVASNPAPYYAALGLVLAAGAGCGVLAGHGGTFLCLVLFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +           +    L   +   +      C  ++   S 
Sbjct: 61  LGGMLVVFAYSAALAAEPFPETWGDESVMKLVVVYWSCVLGAGAWCWESWHAGSW 115


>gi|154940289|gb|ABS88961.1| NADH dehydrogenase subunit 6 [Sebastes ruberrimus]
          Length = 115

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF    ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2   TYIMSLFLIGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +    G     +L   + V  ++ + +    E S +
Sbjct: 62  GMLVVFAYSAAL------AAEPYPESWVSGPVVGDMLMYLVGVGVASSVFWGGWYEASWV 115


>gi|52220966|ref|YP_086917.1| NADH dehydrogenase subunit 6 [Bipes biporus]
 gi|47026780|gb|AAT08592.1| NADH dehydrogenase subunit 6 [Bipes biporus]
          Length = 172

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 41/97 (42%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y      +++   V     P ++  +L  A +  + + +  G  F+ ++ L++Y+G ++V
Sbjct: 6   YFLGVGLLLAVIGVAVNPAPYFAAGALAVAALFGSAILVWCGGLFLPVVLLLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
            F + I ++  +        +     S  + ++   +
Sbjct: 66  VFAYAIALVPGERAGVYGGWQVWACVSGLVFVVFCLV 102


>gi|295641269|gb|ADG22805.1| NADH dehydrogenase subunit 6 [Nasua nasua]
          Length = 177

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + ++S     +  +PIY    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MTVYVVFILSIIFVMSFVGFSSKPSPIYGGLVLIVGGAIGCGIVLCFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +    + I+         +  L +F +G+L+  L  C
Sbjct: 61  LGGMLVVFGYT-TAMAIEQYPEVWVSNKAVLVTFVMGLLSELLTAC 105


>gi|37496473|emb|CAD22010.1| NADH dehydrogenase subunit 6 [Tapirus terrestris]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYVVFVLSVIFVIGFVGFSSKPSPIYGGLVLIVSGGVGCGIILNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +   M                LG+F +G+    ++V  
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNVVVLGAFILGLFMEFVLVLW 106


>gi|145207911|dbj|BAF56568.1| NADH dehydrogenase subunit 6 [Echinococcus canadensis]
          Length = 151

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 5/118 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+++      F  +         T     Y V  ++ A + +   +++ G  + +++  +
Sbjct: 1   MLLEIFIVMYFCVLMFFCF----TSHCIYYCVLLVVNALLASCICYMVYGFSWYSLLLCL 56

Query: 61  VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VY+G V V F+F+ +   + +  +     + G    F  G+L   L+        FS 
Sbjct: 57  VYIGGVYVLFIFVSVFSPNSNFVLYRSTWELGLCVLFGFGLLVCGLVYYVLIGAEFSG 114


>gi|119182333|ref|XP_001242309.1| predicted protein [Coccidioides immitis RS]
          Length = 446

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 145 PLEISGFIL-LLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184
              I G IL L++M+ A+ L     R    ++  +Q E   
Sbjct: 82  LFIILGLILFLMAMVVAMALGFSSTRLGDIENTEQQKEVRR 122


>gi|32709131|gb|AAP86785.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709134|gb|AAP86787.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709137|gb|AAP86789.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709140|gb|AAP86791.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709143|gb|AAP86793.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709146|gb|AAP86795.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709149|gb|AAP86797.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709152|gb|AAP86799.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709155|gb|AAP86801.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709158|gb|AAP86803.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709161|gb|AAP86805.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709164|gb|AAP86807.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709167|gb|AAP86809.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709170|gb|AAP86811.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709173|gb|AAP86813.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709176|gb|AAP86815.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709179|gb|AAP86817.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709182|gb|AAP86819.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709185|gb|AAP86821.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
 gi|32709188|gb|AAP86823.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo]
 gi|32709191|gb|AAP86825.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo]
 gi|32709194|gb|AAP86827.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo]
 gi|32709197|gb|AAP86829.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo]
 gi|32709200|gb|AAP86831.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo]
 gi|32709203|gb|AAP86833.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo]
 gi|32709206|gb|AAP86835.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo]
 gi|32709209|gb|AAP86837.1| NADH dehydrogenase subunit 6 [Hypoplectrus guttavarius]
 gi|32709212|gb|AAP86839.1| NADH dehydrogenase subunit 6 [Hypoplectrus aberrans]
 gi|32709215|gb|AAP86841.1| NADH dehydrogenase subunit 6 [Hypoplectrus aberrans]
 gi|32709218|gb|AAP86843.1| NADH dehydrogenase subunit 6 [Hypoplectrus aberrans]
 gi|32709221|gb|AAP86845.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709224|gb|AAP86847.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709227|gb|AAP86849.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709230|gb|AAP86851.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709233|gb|AAP86853.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709236|gb|AAP86855.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709239|gb|AAP86857.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709242|gb|AAP86859.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709248|gb|AAP86863.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709251|gb|AAP86865.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709254|gb|AAP86867.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709257|gb|AAP86869.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709260|gb|AAP86871.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709263|gb|AAP86873.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
 gi|32709269|gb|AAP86877.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709272|gb|AAP86879.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709275|gb|AAP86881.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709278|gb|AAP86883.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709281|gb|AAP86885.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709284|gb|AAP86887.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709287|gb|AAP86889.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709290|gb|AAP86891.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709293|gb|AAP86893.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709296|gb|AAP86895.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709299|gb|AAP86897.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709302|gb|AAP86899.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709305|gb|AAP86901.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709308|gb|AAP86903.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709311|gb|AAP86905.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709314|gb|AAP86907.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709317|gb|AAP86909.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709320|gb|AAP86911.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709323|gb|AAP86913.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709326|gb|AAP86915.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709329|gb|AAP86917.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709332|gb|AAP86919.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor]
 gi|32709338|gb|AAP86923.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709341|gb|AAP86925.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709344|gb|AAP86927.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709347|gb|AAP86929.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709350|gb|AAP86931.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709353|gb|AAP86933.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709356|gb|AAP86935.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709359|gb|AAP86937.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709362|gb|AAP86939.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709365|gb|AAP86941.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709368|gb|AAP86943.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709371|gb|AAP86945.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma]
 gi|32709374|gb|AAP86947.1| NADH dehydrogenase subunit 6 [Hypoplectrus sp. 'blue'-MLR-2003]
 gi|32709377|gb|AAP86949.1| NADH dehydrogenase subunit 6 [Hypoplectrus sp. 'blue'-MLR-2003]
 gi|32709380|gb|AAP86951.1| NADH dehydrogenase subunit 6 [Hypoplectrus sp. 'blue'-MLR-2003]
 gi|32709383|gb|AAP86953.1| NADH dehydrogenase subunit 6 [Hypoplectrus sp. 'tan'-MLR-2003]
 gi|32709386|gb|AAP86955.1| NADH dehydrogenase subunit 6 [Hypoplectrus sp. 'tan'-MLR-2003]
 gi|32709389|gb|AAP86957.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 2/120 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    ++    V +  +P ++   L+       G+    G  F++++  ++Y+G ++V 
Sbjct: 7   IFLLGLVLGLTAVASNPSPYFAALGLVVVAGMGCGILSGYGGPFLSLVLFLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            +F            E    R  L    + IL   ++        F             +
Sbjct: 66  -VFAYSAALAAEPFPETLGSRPVLAFMVVYILGGVILSSLFWGGWFEYAWVPGDEFGDYS 124


>gi|19481540|gb|AAL88842.1|AF407109_1 NADH dehydrogenase subunit 6 [Vidua macroura]
          Length = 159

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 33/55 (60%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +
Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL 73


>gi|84488631|ref|YP_448827.1| NADH dehydrogenase subunit 6 [Psammobates pardalis]
 gi|67005644|gb|AAY62441.1| NADH dehydrogenase subunit 6 [Psammobates pardalis]
          Length = 174

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 43/108 (39%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F +LF F  +     V    +P Y V SL+       G  + +G  F++++  ++Y+G +
Sbjct: 4   FMFLFGFCFVFWMIGVSCSSSPYYGVLSLVLGAAFGCGALVGMGGSFISLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           +V F +   +                 G  ++  +   + V  S + +
Sbjct: 64  LVIFAYSSALAAEPYPGGWGGLGAFIYGLCYLVSVVWLMSVDYSWWSI 111


>gi|146142456|gb|ABQ01710.1| NADH dehydrogenase subunit 6 [Rhodeus uyekii]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L   M I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYVMFSLL-VMLILGLIAVASNPTPYFAALGLVVAAGVGCGILVGSGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   +       AEP  +     S F  +L   + V  +  + +    E S
Sbjct: 60  LGGMLVVFAYSAAL------AAEPFPEAWGARSVFGYVLIYLVGVGLAAGLFWMGWHEGS 113

Query: 123 RLVFK 127
            +V  
Sbjct: 114 WVVVD 118


>gi|269201738|ref|YP_003281007.1| conserved hypothetical protein, transposon-related protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|262074028|gb|ACY10001.1| conserved hypothetical protein, transposon-related protein
           [Staphylococcus aureus subsp. aureus ED98]
          Length = 637

 Score = 34.6 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAE------FVAMITLV 60
            F L   +A+   FL ++    I+S F+LI  F+  A  +L+          F A+   +
Sbjct: 302 MFTLIITIALSIIFLSISFAKVIFSAFALIL-FLFLAFSWLISFIPGFEISVFKALARTL 360

Query: 61  VYVG-AVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116
            Y+  +  + FLF+++   IDI    V    ++  FL   F+ I+   L    S  + F 
Sbjct: 361 GYIILSACMTFLFVVIGFSIDIANAFVKPESQQAYFLNVIFLMIILFVLYKKRSEIIDFV 420

Query: 117 AEGELS 122
             G LS
Sbjct: 421 TRGNLS 426


>gi|91176274|ref|YP_537143.1| NADH dehydrogenase subunit 6 [Balaenoptera omurai]
 gi|90265618|dbj|BAE91838.1| NADH6 [Balaenoptera omurai]
 gi|90265632|dbj|BAE91851.1| NADH6 [Balaenoptera omurai]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S   V +  +P+Y    LI       G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFVLSIIFVVSFVGVSSKPSPVYGGLGLIVGGGVGCGVVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G++   LIV 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFILGLVVELLIVA 105


>gi|237666227|ref|ZP_04526214.1| putative membrane protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237658317|gb|EEP55870.1| putative membrane protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 490

 Score = 34.6 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 24  TVRNPIYS--VFSLIFAFVNAAGLFLLL-GAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
             +  +YS  +  LI  F   + +++ L    +V +  + +Y        L    +  I 
Sbjct: 21  FTKFVVYSLFILFLIVFFTAFSSVYINLKNINYVNITLIGIY------LILTGGFIYGIR 74

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY- 139
            ++++ +     L S FI  LA  L+  ++    F    + +  +  G+N   +G   + 
Sbjct: 75  KKISKKKMFYAILISGFILRLAWALVTKSTPISDFKTIYDSATNLLAGDNSSFVGLGYFA 134

Query: 140 -----TQYAYPLEIS 149
                T Y     + 
Sbjct: 135 RFPHMTPYVLLFSLI 149


>gi|59410567|gb|AAW84390.1| NADH dehydrogenase subunit 6 [Vidua codringtoni]
 gi|59410575|gb|AAW84394.1| NADH dehydrogenase subunit 6 [Vidua codringtoni]
          Length = 159

 Score = 34.6 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 33/55 (60%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +
Sbjct: 19 VASNPSPYYGVVGLVVASIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL 73


>gi|29570723|ref|NP_818837.1| NADH dehydrogenase subunit 6 [Cobitis striata]
 gi|29501050|dbj|BAC67414.1| NADH dehydrogenase subunit 6 [Cobitis striata]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L     ++    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LLLMALVVGLVAVASNPAPYFAALGLVVAAGVGCGVLISHGGSFLSLVLFLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107
            +F            E    R  LG   + ++   L+V
Sbjct: 66  -VFAYSAALAAEPFPESWGDRSVLGYVLVYLIGVGLLV 102


>gi|42632283|ref|NP_976111.1| NADH dehydrogenase subunit 6 [Rhinolophus pumilus]
 gi|16416420|dbj|BAB70629.1| NADH dehydrogenase subunit 6 [Rhinolophus pumilus]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS     +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTIFVISFVGFSSKPSPIYGGVGLIVSGGVGCGIVMSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V F +   M            K          I+ A  ++C  N
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEVWVSNKVVMGAFISGLIVEAVFVLCVLN 109


>gi|16357077|ref|NP_443409.1|ND6_15821 NADH dehydrogenase subunit 6 [Zenopsis nebulosus]
 gi|16267208|dbj|BAB70337.1| NADH dehydrogenase subunit 6 [Zenopsis nebulosus]
          Length = 169

 Score = 34.6 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P Y+   L+       G+ +  G  F++++  ++Y+G ++V F +   +       
Sbjct: 17  SNPSPYYAALGLVLVSGAGCGVLVAYGGGFLSLVLFLIYLGGMLVVFAYSAAL------A 70

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           AEP  +     + F  ++   ++V ++   + S   E S +  
Sbjct: 71  AEPYPEAWGGWAVFGYVITYAVLVWSAALWMGSGWYEESWVPV 113


>gi|215979775|ref|YP_002333269.1| NADH dehydrogenase subunit 6 [Lagocephalus wheeleri]
 gi|215422725|dbj|BAG85559.1| NADH dehydrogenase subunit 6 [Lagocephalus wheeleri]
          Length = 172

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
             +     VV+  +P +   SL+       G+ +  G  F++++  ++Y+G ++V F +
Sbjct: 10 LGLVFGLIAVVSNPSPYFGALSLVVVAGFGCGVLVWHGGSFLSLVLFLIYLGGMLVVFAY 69


>gi|213028652|ref|ZP_03343099.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 37

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 22/36 (61%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFV 40
             FY+   +AI+++  V+T  NP++++  L+ + +
Sbjct: 2  EFAFYICGLIAILATLRVITHTNPVHALLYLVISLL 37


>gi|155624532|gb|ABU24611.1| NADH dehydrogenase subunit 6 [Felis silvestris]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   L  F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105


>gi|154818566|gb|ABS87756.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   L  F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105


>gi|228472482|ref|ZP_04057244.1| hypothetical protein CAPGI0001_0749 [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276167|gb|EEK14914.1| hypothetical protein CAPGI0001_0749 [Capnocytophaga gingivalis ATCC
           33624]
          Length = 365

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 141 QYAYPLEISGFILLLS 156
           +Y  P  +S F+LL +
Sbjct: 6   KYFLPFILSSFLLLTA 21


>gi|67005591|gb|AAY62392.1| NADH dehydrogenase subunit 6 [Testudo hermanni]
          Length = 175

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 46/116 (39%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  LF F  +     V    +P Y VFSL+       G+ + +G  FV++I  ++Y+G +
Sbjct: 4   FVLLFGFCFVFWMAGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYMGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +V F +   +       +         G  ++  +   ++   S +      G  +
Sbjct: 64  LVIFAYSCALAAEPYPASWGTMDMIVYGLCYLISVLWLMLTDCSWWWHMEGFGNST 119


>gi|289183313|ref|YP_003457289.1| NADH dehydrogenase subunit 6 [Gigantactis vanhoeffeni]
 gi|288909063|dbj|BAI77298.1| NADH dehydrogenase subunit 6 [Gigantactis vanhoeffeni]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 24  TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83
           +  +P ++   L+       G+ +  GA F++++  ++Y+G ++V F +   +       
Sbjct: 21  SNPSPYFAALGLVGVAGAGCGVLVGHGAPFLSLVLFLIYLGGMLVVFAYSAALAAKPYPE 80

Query: 84  AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136
           +   +            +A+ ++       + S              VE +G+
Sbjct: 81  SLGSRP-----------VASSMVGYLMGVGLISTFFWGGWYQVSWLTVEELGE 122


>gi|126215457|ref|YP_001054865.1| NADH dehydrogenase subunit 6 [Abudefduf vaigiensis]
 gi|126143590|dbj|BAF47326.1| NADH dehydrogenase subunit 6 [Abudefduf vaigiensis]
          Length = 173

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++F F  I+    V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V
Sbjct: 6   FMFLFGLILGLAAVASNPSPYFAALGLVMVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
            F +   +       AEP  +          +L   L V  ++ + +    E S +   
Sbjct: 66  VFAYSAAL------AAEPYPEGWGSWPVLGVMLVYVLGVVLTSGLFWGGWYEGSWVSAD 118


>gi|8714506|gb|AAF78823.1| NADH dehydrogenase subunit 6 [Chelonia mydas]
          Length = 88

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 39/80 (48%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          +LF F  +     V    +P Y V SL+       GL + +G  FV+++  ++Y+G ++V
Sbjct: 6  FLFGFCFVFWMVGVSCNPSPYYGVLSLVLGAAFGCGLLVSMGGSFVSVVLFLIYLGGMLV 65

Query: 69 FFLFIIMMLDIDIEVAEPRK 88
           F +   +++    VA   +
Sbjct: 66 IFAYSSALVEEPYPVAWGNQ 85


>gi|282163947|ref|YP_003356332.1| hypothetical protein MCP_1277 [Methanocella paludicola SANAE]
 gi|282156261|dbj|BAI61349.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 283

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 104 ELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLE--ISGFILLLSMIGAI 161
            L+  A +  +     E   +   G   EN G      +  P    ++  ILL +  G I
Sbjct: 113 LLLFPADDLAILKDLNESLPVTADGGTTENQG------WLLPFIVVLATAILLAA--GGI 164

Query: 162 VLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195
            L+++ RR IK +   + + + PD +   V + +
Sbjct: 165 YLLMKKRRPIKPEPQQESVPAAPDATPAPVSMDA 198


>gi|154818601|gb|ABS87782.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris]
          Length = 175

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY  F LI A     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M       A    K   L  F  G+LA  L  C
Sbjct: 61  LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105


>gi|148910942|gb|ABR18523.1| NADH dehydrogenase subunit 6 [Takifugu obscurus]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 7  FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63
           FY   F+ +     ++V   NP   Y VF+L+   +   G  +L G   ++++ L++Y+
Sbjct: 1  MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTSLSLVLLMIYM 60

Query: 64 GAVIVFFLF 72
          G ++V F++
Sbjct: 61 GGMLVVFIY 69


>gi|269128819|ref|YP_003302189.1| NADH/Ubiquinone/plastoquinone (complex I) [Thermomonospora curvata
           DSM 43183]
 gi|268313777|gb|ACZ00152.1| NADH/Ubiquinone/plastoquinone (complex I) [Thermomonospora curvata
           DSM 43183]
          Length = 1040

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +   + + ++     VR  + +   L        GLF+L GA  +A+  LVV    +I+ 
Sbjct: 705 VLGVLVVTAALAATRVRRRLSAALLLSATGYGVVGLFVLHGAPDLALTALVVETLTLIIL 764

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125
              +  + +       P   R    +   GI A   +      +  +A     R +
Sbjct: 765 VFVLRRLPEWFPPSRRPLGLRAASTAVSAGIGAFAALFLLVAVLSRTARPVGPRYI 820


>gi|157736129|ref|YP_001491485.1| NADH dehydrogenase subunit 6 [Heniochus diphreutes]
 gi|157679342|dbj|BAF80400.1| NADH dehydrogenase subunit 6 [Heniochus diphreutes]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           F    ++    V +  +P ++   L+       G+ +  G  F+++I  +VY+G ++V 
Sbjct: 7  FFLIGLVLGLIAVASNPSPFFAALGLVVVAGFGCGILIGHGGSFLSLILFLVYLGGMLVV 66

Query: 70 FLF 72
          F +
Sbjct: 67 FAY 69


>gi|29569526|gb|AAO85231.1| NADH dehydrogenase subunit 6 [Buteo regalis]
          Length = 172

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+   V   G  + L   FVA++  +VY+G
Sbjct: 2  AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLEVPFVALVLFMVYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F++ + +            +
Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86


>gi|23194448|gb|AAN15180.1| NADH dehydrogenase subunit 6 [Paragonimus westermani]
          Length = 150

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 6  LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
          + F    F ++I    V      +Y +  L  A   +  L+ +LG  +  ++  +VYVG 
Sbjct: 3  VVFLSLYFSSLIGFSFV--SHPVVYCILLLTGALGISGYLYTVLGLSWYLVLFCLVYVGG 60

Query: 66 VIVFFLFI 73
          + V F+F+
Sbjct: 61 IYVLFIFV 68


>gi|5835357|ref|NP_007392.1|ND6_12144 NADH dehydrogenase subunit 6 [Equus asinus]
 gi|3122561|sp|P92486|NU6M_EQUAS RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1805758|emb|CAA66025.1| NADH dehydrogenase subunit 6 [Equus asinus]
          Length = 175

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +I      +  +PIY    LI +     G+ +  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVIFVIGFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M                +G F +G+L   ++V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNATVMGVFLLGLLMEVMLVL 105


>gi|331746991|ref|YP_004425135.1| NADH dehydrogenase subunit 6 [Rhinopithecus bieti]
 gi|297340664|gb|ADI32830.1| NADH dehydrogenase subunit 6 [Rhinopithecus bieti]
          Length = 174

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L S + I+      +  +PIY   +L+ + V    + L  G  ++ ++  ++Y
Sbjct: 1   MSYILF-LLSVLLIMGFVGFSSKPSPIYGGLALVVSGVIGCIIILNYGGTYMGLMMFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +    + I+            LGS  IG++    ++  
Sbjct: 60  LGGMMVVFGYT-TAMAIEEYPEAWVSGFEVLGSLLIGLMMEVGLILW 105


>gi|325679765|ref|ZP_08159339.1| conserved domain protein [Ruminococcus albus 8]
 gi|324108580|gb|EGC02822.1| conserved domain protein [Ruminococcus albus 8]
          Length = 371

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 54  VAMITLVVYVGAVIVFF--LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
            A+  ++++VGA+ V    +F+I+++ +  +    +   GF  +  + +L   LI   + 
Sbjct: 55  FALGEVLMFVGALAVVLCPIFLILLIFLHKKAKYRKFCAGFHKTVLMTLLCVVLIYMPTW 114

Query: 112 FMVFSAEGELSRLVFKGNNV--ENIGKVL 138
           ++ FS        V + +N   + +G +L
Sbjct: 115 YIPFSGTLLGEGTVARRDNFDNDQVGTLL 143


>gi|322422673|ref|YP_004222238.1| NADH dehydrogenase subunit 6 [Petrocephalus microphthalmus]
 gi|317176465|dbj|BAJ54283.1| NADH dehydrogenase subunit 6 [Petrocephalus microphthalmus]
          Length = 172

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    ++    V +   P ++   L+ +     G+ ++ G  F+++I  ++Y+G ++V 
Sbjct: 7   MFLIGLVLGLVAVASNPAPYFAALGLVLSAALGCGVLVMCGGSFLSLILFLIYLGGMLVV 66

Query: 70  FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F +   +  +   E         ++  + +G+L          +
Sbjct: 67  FAYSAALAAEPHPEAWGDWSVLSYVVVYILGVLVVGGWALGGWY 110


>gi|205374697|ref|ZP_03227491.1| monovalent cation/H+ antiporter subunit A [Bacillus coahuilensis
           m4-4]
          Length = 798

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + + + ++ +  ++  ++ + ++ +L     + A  F+L  A  +A+  L++   +V   
Sbjct: 631 VLAVILVLGTVTILFAKSRLTAIIALGSVGYSVALFFVLFKAPDLALTQLLIETVSVA-- 688

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
            LF++    +        +     G+  I      L+   S
Sbjct: 689 -LFLLCFYHLPRLSRHEERTSFKFGNLLISAAVGVLVTLIS 728


>gi|119360733|ref|YP_913716.1| NADH dehydrogenase subunit 6 [Leptobotia mantschurica]
 gi|119225441|dbj|BAF41790.1| NADH dehydrogenase subunit 6 [Leptobotia mantschurica]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 2/110 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L     I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V 
Sbjct: 7   LLLIALIVGLVAVASNPAPYFAALGLVVAAGVGCGVLIGHGGSFLSLVLFLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119
            +F            E    R  +G   + +L   L+V       +    
Sbjct: 66  -VFAYSAALAAEPFPEAWGDRSVVGYVLVYLLGVGLMVGLFWENWYEGSW 114


>gi|108767322|ref|YP_636172.1| NADH dehydrogenase subunit 6 [Campostoma anomalum]
 gi|105873539|gb|ABF74772.1| NADH dehydrogenase subunit 6 [Campostoma anomalum]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F  L     I+    V +   P ++   L+ A     G+ L  G  F++++  ++Y+G
Sbjct: 2   TYFVSLLLMALIVGLIAVASNPTPYFAALGLVVAAGVGCGVLLGSGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112
            ++V F +   +       A   R   G++  + +G+L A  +     +
Sbjct: 62  GMLVVFAYSAALAAEPFPEAWGSRSVMGYVFVYLVGVLVAGGLFWGGWY 110


>gi|28894764|ref|NP_795844.1| NADH dehydrogenase subunit 6 [Salangichthys microdon]
 gi|28804966|dbj|BAC58249.1| NADH dehydrogenase subunit 6 [Salangichthys microdon]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +   P ++   L+ A     G+ +  G  F+++I  ++Y+G ++V 
Sbjct: 7   LFLIGLVLGLVAVASNPAPYFAALGLVMAAGAGCGVLVGHGGSFLSLILFLIYLGGMLVV 66

Query: 70  FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104
           F +   +  +   E    R   G++  +F+ + A  
Sbjct: 67  FAYSAALAAEPYPETWGDRSVLGYVAGYFLAVSAMA 102


>gi|317507735|ref|ZP_07965440.1| NADH-Ubiquinone/plastoquinone [Segniliparus rugosus ATCC BAA-974]
 gi|316253988|gb|EFV13353.1| NADH-Ubiquinone/plastoquinone [Segniliparus rugosus ATCC BAA-974]
          Length = 954

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           + + + II +   V + + + +V +          L+ + GA  +A+   +V     +  
Sbjct: 599 VVAVVIIIGAVAAVVLTHRMGAVLASGVTGYGCGMLYAMHGAPDLALTQFLV---ETLTL 655

Query: 70  FLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121
            +F +++   D    EP      F+ + F   + A L V A   +     G  
Sbjct: 656 VVFTLVLRKFDAHTNEPIPALSHFVRTVFSLGVGAGLSVLALYAISARPTGAP 708


>gi|238800155|gb|ACR55945.1| NADH dehydrogenase subunit 6 [Anilius scytale]
          Length = 174

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M + +  F++   + +    ++ T   P + V +L+      + + +++G  F+A++ LV
Sbjct: 1   MTLFNFLFFVGLVLILAGVLVLNTTTVPYFGVVALMSVVALCSFVMVVMGRMFMALVVLV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           VY+G +++ F + +  ++ D+E          +   F+ ++ A  +    
Sbjct: 61  VYLGGMMIIFGYCVS-VEKDLESGYWSIGFKVVSYLFVFVVVAICLWSIM 109


>gi|219524159|ref|YP_002456307.1| NADH dehydrogenase subunit 6 [Francolinus pintadeanus]
 gi|157678157|gb|ABV60476.1| NADH dehydrogenase subunit 6 [Francolinus pintadeanus]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           + F        ++    V +  +P Y V  L+ A V   G  + LG  FV++   +VY+G
Sbjct: 2   TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVVASVVGCGWLVNLGVSFVSLALFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
            ++V F++ + +       A    +   LG     +L   + V    F+ F
Sbjct: 62  GMLVVFVYSVSLAADPYPEAWGSWR--VLGYGVGFVLVICVGVVLGGFVDF 110


>gi|157736115|ref|YP_001491472.1| NADH dehydrogenase subunit 6 [Chaetodon auripes]
 gi|157679328|dbj|BAF80387.1| NADH dehydrogenase subunit 6 [Chaetodon auripes]
          Length = 172

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
           + F+LF    +     V    +P ++ F L+   +   G     G  F+++I  ++Y+G 
Sbjct: 5   VVFFLFGL--VFGLVGVAANPSPFFAAFGLVVVAIFGCGALAQEGGVFLSLILFLIYLGG 62

Query: 66  VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           ++V F +   +  D   E        G++  +   ++ A  +  
Sbjct: 63  MLVVFAYSAALAADPHPESLGDSSVMGYMAFYLAVVVVASGLFW 106


>gi|156741749|ref|YP_001431878.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
 gi|156233077|gb|ABU57860.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
          Length = 792

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           + + I ++  V+   + + +V  L F     A +FLL     +A+    V    V + F+
Sbjct: 606 ALIIIAATTFVIRATSRMAAVVGLGFVGYGTALVFLLFSGPDLAITQFAVET-LVAILFV 664

Query: 72  FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131
            ++  L     ++    +    G    G   A + V     +    E  +S  + + +  
Sbjct: 665 LVVYRLPRFSNLSTAGARVRSAGLAIAG--GALMTVLTLMALASPTESRVSGFLAENSVP 722

Query: 132 ENIGK 136
           +  G+
Sbjct: 723 QAFGR 727


>gi|326535977|ref|YP_004300418.1| NADH dehydrogenase subunit 6 [Galaxias gollumoides]
 gi|14039387|gb|AAK53206.1| NADH dehydrogenase subunit 6 [Galaxias gollumoides]
 gi|311788407|gb|ADQ12796.1| NADH dehydrogenase subunit 6 [Galaxias gollumoides]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78

Query: 82  EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
             +   R   G++ ++F+G+L    +     +
Sbjct: 79  PESWGDRSVLGYVLAYFVGVLVIAGLFWGGWY 110


>gi|59939176|gb|AAX12371.1| polyprotein [Pronghorn antelope pestivirus]
          Length = 1653

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 77   LDIDIEVAEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135
             D++ +         FL    + +L    ++     +M  +   + + LV  G+ V  IG
Sbjct: 1012 FDLEADDHHKNWFNEFLVVVVVALLGGRYILWLIIIYMTLTYYPDDAALVNTGDTV-AIG 1070

Query: 136  KVLYTQYAYPLEISGFILLL 155
             +L++      E+  + LL+
Sbjct: 1071 NILFSNN---FEVVSYFLLI 1087


>gi|315604982|ref|ZP_07880036.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
            F0310]
 gi|315313261|gb|EFU61324.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
            F0310]
          Length = 1140

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 35/175 (20%)

Query: 17   ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
            +   L+ +V N +  +  L+ AFV+ + +                 V ++++  +  I +
Sbjct: 993  VMGSLMSSVTNIVNIISWLLIAFVSISLI-----------------VSSIMIAIITYISV 1035

Query: 77   LDIDIEV--------AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
            L+   E+        ++    R F     I  L A LI     + + +    + +  F+ 
Sbjct: 1036 LERRKEIGILRSIGASKGDVSRVFNAETVIEGLLAGLIGVGVTYGLCAIANAVVKASFEV 1095

Query: 129  NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183
             N+  +  +  T           +L +  I  I+   R      RQD  + L S 
Sbjct: 1096 ENIAQLSAL--TAAIL--IAVSVLLTV--IAGIIPAAR----ASRQDPVEALRSE 1140


>gi|238924319|ref|YP_002937835.1| DNA translocase FtsK [Eubacterium rectale ATCC 33656]
 gi|238875994|gb|ACR75701.1| DNA translocase FtsK [Eubacterium rectale ATCC 33656]
          Length = 943

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y+F  + ++ SF  V+ +   Y++  L+   V            F+  I + +Y   + V
Sbjct: 71  YIFPLVLLVGSFFAVSNKGNSYAIMKLVMTIV------------FIWFICVFMY---LAV 115

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           +  F +  +   I+  E     GF+G+    IL   + +  +  +  
Sbjct: 116 YGEFAVSPVQSYIDSVERHSGGGFIGALIGCILVPAVGIIGAYVVTI 162


>gi|195934722|ref|YP_002120657.1| NADH dehydrogenase subunit 6 [Meles meles]
 gi|155368609|emb|CAM98622.1| NADH dehydrogenase subunit 6 [Meles meles]
          Length = 177

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + ++S     +  +PIY   +LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MMTYIVFILSVVFVVSFVGFSSKPSPIYGGLALIISGAVGCGIVLSFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G+L+  L+ C
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVVGLLSELLMAC 105


>gi|147742962|ref|YP_001218778.1| NADH dehydrogenase subunit 6 [Echinococcus vogeli]
 gi|145207872|dbj|BAF56532.1| NADH dehydrogenase subunit 6 [Echinococcus vogeli]
          Length = 151

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 5/118 (4%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           M+++      F  + +       T     + V  +I A + +   +++ G  + +++  +
Sbjct: 1   MLLEIFVVMYFCVLMVFC----YTSHCVYHCVLLVINALLASCICYVVYGFSWYSLLFCL 56

Query: 61  VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           VYVG V V F+F+ +   + +  +     + G L      +L    I  +     FS 
Sbjct: 57  VYVGGVYVLFIFVSVFSPNSNFVLYSGSLEIGALVCGGFWLLVCGFIFYSLVGGEFSG 114


>gi|29570765|ref|NP_818928.1| NADH dehydrogenase subunit 6 [Gonorynchus greyi]
 gi|29501176|dbj|BAC67531.1| NADH dehydrogenase subunit 6 [Gonorynchus greyi]
          Length = 174

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 39/115 (33%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +    +     ++    V +   P Y+   L+ A     G+    G  F+ ++  ++Y
Sbjct: 1   MITYLMCVLLCGVVVGLIAVASNPAPYYAALGLVLASGVGCGVLAGHGGTFLCLVLFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +           K    L   +   + A  +     +   S 
Sbjct: 61  LGGMLVVFAYSAALAAEPFPETWGDKSVMSLVVVYSSGVLAGGVWSWETWYGGSW 115


>gi|16357148|ref|NP_443253.1| NADH dehydrogenase subunit 6 [Harpadon microchir]
 gi|16266845|dbj|BAB70038.1| NADH dehydrogenase subunit 6 [Harpadon microchir]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 46/111 (41%), Gaps = 1/111 (0%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           +    LF F  +I    V +   P ++   L+ +     G+ L  G  F++++  +VY+G
Sbjct: 2   AYLMSLFLFGFVIGMVGVASNPAPYFAALGLVLSAGFGCGVMLSCGGSFLSLVLFLVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMV 114
            ++V F +   +       +   R   G++  +  G++   +      + +
Sbjct: 62  GMLVVFAYSAALAAEPYPTSWGDRSVVGYVVVYLSGVVLVGVSFMGGWYDI 112


>gi|327492595|ref|YP_004347494.1| NADH dehydrogenase subunit 6 [Polyspina piosae]
 gi|327392292|dbj|BAK09741.1| NADH dehydrogenase subunit 6 [Polyspina piosae]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 22 VVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          +V   NP   Y VF+L+   +   G  +L G  F++++ L++Y+G ++V F++
Sbjct: 17 IVLSTNPAPFYGVFNLVLVALFCCGASVLHGGTFLSLVLLMIYMGGMLVVFIY 69


>gi|14602397|ref|NP_148775.1| NADH dehydrogenase subunit 6 [Trachurus japonicus]
 gi|58372109|ref|YP_194935.1| NADH dehydrogenase subunit 6 [Trachurus trachurus]
 gi|14588631|dbj|BAB61822.1| NADH dehydrogenase subunit 6 [Trachurus japonicus]
 gi|14588645|dbj|BAB61835.1| NADH dehydrogenase subunit 6 [Trachurus japonicus]
 gi|38603506|dbj|BAD02889.1| NADH dehydrogenase subunit 6 [Trachurus trachurus]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 32/68 (47%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          +   YL  F  +     V +  +P ++   L+       G+ +  G  F++++  ++Y+G
Sbjct: 2  TFIMYLVLFSFVFGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61

Query: 65 AVIVFFLF 72
           ++V F +
Sbjct: 62 GMLVVFAY 69


>gi|326513180|dbj|BAK06830.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 353

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 149 SGFILLL--SMIGAIVLMLRHRRDIK 172
            G +LL+  +++GA VL  R R D K
Sbjct: 43  VGALLLVGGAIVGAAVLAWRRRGDGK 68


>gi|326489239|dbj|BAK01603.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 325

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 149 SGFILLL--SMIGAIVLMLRHRRDIK 172
            G +LL+  +++GA VL  R R D K
Sbjct: 15  VGALLLVGGAIVGAAVLAWRRRGDGK 40


>gi|291529410|emb|CBK94996.1| DNA translocase FtsK [Eubacterium rectale M104/1]
          Length = 943

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y+F  + ++ SF  V+ +   Y++  L+   V            F+  I + +Y   + V
Sbjct: 71  YIFPLVLLVGSFFAVSNKGNSYAIMKLVMTIV------------FIWFICVFMY---LAV 115

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           +  F +  +   I+  E     GF+G+    IL   + +  +  +  
Sbjct: 116 YGEFAVSPVQSYIDSVERHSGGGFIGALIGCILVPAVGIIGAYVVTI 162


>gi|332886956|dbj|BAK23067.1| NADH dehydrogenase subunit 6 [Horadandia atukorali]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           L   + I     V +   P ++   L+       G+ +  G  F+++I  ++Y+G ++V 
Sbjct: 7   LLLVVLITGLVAVASNPTPYFAAIGLVVTAGVGCGVLVYCGGTFLSLILFLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            +F            E    R  +    I +L   L+        +     +S  + + +
Sbjct: 66  -VFAYSAALAAEPFPEAWGGRSVVEYVLIYLLGVGLVAGFFWGSWYEGYWVVSDSLKEFS 124


>gi|260831914|ref|XP_002610903.1| hypothetical protein BRAFLDRAFT_126287 [Branchiostoma floridae]
 gi|229296272|gb|EEN66913.1| hypothetical protein BRAFLDRAFT_126287 [Branchiostoma floridae]
          Length = 1366

 Score = 34.6 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 10/124 (8%)

Query: 13  FMAIISSFLVVTVRNPIYSV----FSLIFAFVNAAGLFLLLGAEFVAMITLVVY------ 62
              I    LV+  + P   V    F LI +      L+ L            VY      
Sbjct: 397 LYVIAPGLLVLLYKKPKLGVGLVTFFLILSMFLTGILYHLFVNVPSGSYYATVYKFTFTR 456

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G  +V  L   ++   D +V      +  +   + G  A  ++   +   + +      
Sbjct: 457 MGPYMVGLLMGYILFTTDRKVPNTGSTKALMLLGWFGATAVAVLFVGAPGWIGTPFSIWG 516

Query: 123 RLVF 126
           +  +
Sbjct: 517 QPAW 520


>gi|84579669|dbj|BAE72249.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 42/109 (38%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++    V +  +P ++   L+     + G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L   ++ ++    +  +  +   S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVVCVSVFFSGGWFEGSW 114


>gi|90418819|ref|ZP_01226730.1| putative NADH, ubiquinone oxidoreductase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336899|gb|EAS50604.1| putative NADH, ubiquinone oxidoreductase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 785

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++   + +   F VV  +N + ++ SL       A +F+L+GA  ++    +V   +V++
Sbjct: 608 WIVLALLLCGLFAVVVAKNRLTAIVSLGIQGFAVALIFMLMGAPDLSFTQFMVETLSVVI 667

Query: 69  FFL 71
             L
Sbjct: 668 LAL 670


>gi|38707518|ref|NP_944618.1| NADH dehydrogenase subunit 6 [Balaena mysticetus]
 gi|38602429|emb|CAD87895.1| NADH6 protein [Balaena mysticetus]
 gi|62086662|dbj|BAD91757.1| NADH dehydrogenase subunit 6 [Balaena mysticetus]
          Length = 175

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M +   ++ S + +IS   V +  +PIY    LI       G+ L  G  F+ ++  +VY
Sbjct: 1   MMTYIVFILSIIFVISFVGVSSKPSPIYGGLGLIVGGGAGCGVVLNFGGSFLGLMVFLVY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108
           +G ++V F +   M             +  LG+F +G++   L+V 
Sbjct: 61  LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFVLGLMVEFLVVV 105


>gi|322422715|ref|YP_004222427.1| NADH dehydrogenase subunit 6 [Micromesistius poutassou]
 gi|317423518|emb|CBY85666.1| NADH dehydrogenase 6 [Micromesistius poutassou]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 15  AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74
            ++    V +  +P ++   L+        + +  G  F++++  ++Y+G ++V F +  
Sbjct: 12  MVLGVISVASNPSPYFAALGLVLVAGVGCVILMGHGGSFLSLVLFLIYLGGMLVVFAYCA 71

Query: 75  MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127
            +       AEP  +     S    +L   L+V  +    +    E   +   
Sbjct: 72  AL------AAEPYPEAWGEWSVLGSVLGYLLLVVGAGSWFWEGWYEAMWVPVD 118


>gi|317097340|ref|YP_004123542.1| NADH dehydrogenase subunit 6 [Microphysogobio koreensis]
 gi|223951296|gb|ACN29588.1| NADH dehydrogenase subunit 6 [Microphysogobio koreensis]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 1/115 (0%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGILVGSGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +G ++V F +   +       A   +        ++  +     V    +   S 
Sbjct: 60  LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLVYLLGVVLMAGVFWGGWYEGSW 114


>gi|291525101|emb|CBK90688.1| DNA translocase FtsK [Eubacterium rectale DSM 17629]
          Length = 943

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           Y+F  + ++ SF  V+ +   Y++  L+   V            F+  I + +Y   + V
Sbjct: 71  YIFPLVLLVGSFFAVSNKGNSYAIMKLVMTIV------------FIWFICVFMY---LAV 115

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115
           +  F +  +   I+  E     GF+G+    IL   + +  +  +  
Sbjct: 116 YGEFAVSPVQSYIDSVERHSGGGFIGALIGCILVPAVGIIGAYVVTI 162


>gi|289183216|ref|YP_003457199.1| NADH dehydrogenase subunit 6 [Astrospartus mediterraneus]
 gi|288995559|emb|CBH40160.1| NADH dehydrogenase subunit 6 [Astrospartus mediterraneus]
          Length = 159

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF F  I  S +V+   +P YSV  ++   +         G  F  +I L+VYVG ++V 
Sbjct: 4   LFIFAIISGSVIVLWSSSPYYSVLGVLLQSLGYCFFLCFFGFPFFGLIFLLVYVGGMMVV 63

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGELSRLVFK 127
           FLF  ++       +   +   FL SF I IL     L      F   S   E+      
Sbjct: 64  FLFSTVLSAERYLNSSILEVLFFLFSFNIIILPYLEFLFPWIYGFSFLSLSKEIQVC--- 120

Query: 128 GNNVENIGKVLYTQYAYPLEI 148
               E +G +++        +
Sbjct: 121 ----ELMGSLMFLTCLVAFIL 137


>gi|215979579|ref|YP_002333087.1| NADH dehydrogenase subunit 6 [Chelonodon patoca]
 gi|215422767|dbj|BAG85598.1| NADH dehydrogenase subunit 6 [Chelonodon patoca]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 37/97 (38%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P +   SL+       G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFGALSLVVVAAFGCGVLIWHGGAFLSLVLFLIYLGGMLVVFAYSAALAAEPY 78

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
                          ++GI+    ++       ++  
Sbjct: 79  PETLGSWSVLVWMLTYLGIVVLVYVILLGWGDEYTWP 115


>gi|198447341|ref|YP_002221352.1| NADH dehydrogenase subunit 6 [Rhodeus ocellatus]
 gi|63081763|gb|AAY30630.1| NADH dehydrogenase subunit 6 [Rhodeus ocellatus]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 8   FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F L   +A+I   + V     P ++   L+ A     G+ +  G  F++++  ++Y+G +
Sbjct: 4   FMLLMMVALILGLIAVASNPTPYFAALGLVVAAGVGCGILIGSGGPFLSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
           +V F +   +       AEP  +     S  + +L     V            E S +V 
Sbjct: 64  LVVFAYSAAL------AAEPFPEAWGSRSVLLYVLVYSTGVLLVGGSFLGGWYEGSWVVV 117

Query: 127 KG 128
            G
Sbjct: 118 DG 119


>gi|118196934|emb|CAL37032.1| NADH dehydrogenase subunit 6 [Ramphotyphlops australis]
          Length = 175

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 49/113 (43%)

Query: 5   SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
             F +L     +I  + + +   P + V  +I + V + GL    G+ FV+++  +VY+G
Sbjct: 2   EFFIFLLCLCIVIGLYGLCSSVVPYFGVVCVIISSVFSCGLIAAFGSAFVSLLLFIVYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            ++V F + + M +         +   +      G+L   +++      V S+
Sbjct: 62  GMMVVFAYSVAMTEGFEFADMKGRIFVWESMVLSGVLGVVIMLSLWVSGVGSS 114


>gi|51038595|ref|YP_063371.1| NADH dehydrogenase subunit 6 [Pelodiscus sinensis]
 gi|50402837|gb|AAT76646.1| NADH dehydrogenase subunit 6 [Pelodiscus sinensis]
          Length = 174

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 46/109 (42%)

Query: 6   LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65
            F +LF    +     V +  +P Y V  L+F  V    + + +G  F++++  ++Y+G 
Sbjct: 3   FFMFLFEVCFVFWIISVASGPSPYYGVVGLVFGAVFGCLMLVGVGGSFISLVLFLIYLGG 62

Query: 66  VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
           ++V F + + +       A       F    ++  +   ++ C   + +
Sbjct: 63  MLVVFAYSVALTGDPYPSAWRGYGDLFCMVGYVLFVVGAVMYCFDKWSL 111


>gi|16357302|ref|NP_443396.1|ND6_15820 NADH dehydrogenase subunit 6 [Poromitra oscitans]
 gi|16267103|dbj|BAB70246.1| NADH dehydrogenase subunit 6 [Poromitra oscitans]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 35/98 (35%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       G+   +G  F++++  ++Y+G ++V F +   +   
Sbjct: 17  IAVASNPSPYFAALGLVLVSGIGCGILFGMGGPFLSLVLFLIYLGGMLVVFAYSAALAAE 76

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
               +            + GI+          +   S 
Sbjct: 77  AYPESWGSWSVMGYVLAYCGIVLLFSGYFWGGWYEVSW 114


>gi|223007706|gb|ACM69958.1| NADH dehydrogenase subunit 6 [Homo sapiens]
          Length = 174

 Score = 34.2 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 39/103 (37%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             +L S   ++      +  +PIY    LI + V    + L  G  ++ ++  ++Y+G +
Sbjct: 4   ALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +V F +   M   +   A        +       +   L++  
Sbjct: 64  MVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWV 106


>gi|300780412|ref|ZP_07090268.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A
           [Corynebacterium genitalium ATCC 33030]
 gi|300534522|gb|EFK55581.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A
           [Corynebacterium genitalium ATCC 33030]
          Length = 1016

 Score = 34.2 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 12  SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71
           + + +I +      RN +  V  +       A +F L GA  +A+  ++V    V+V F+
Sbjct: 619 AIILMICAVAATRARNRLSIVILVGMTGYALAFMFALHGAPDLALTQVLVET-IVMVVFM 677

Query: 72  FIIMMLDIDIEVAEPRKKR 90
            ++  L  D++V +    R
Sbjct: 678 LVLRKLPTDVDVRKDLDNR 696


>gi|34106440|gb|AAQ62221.1| NADH dehydrogenase subunit 6 [Vidua purpurascens]
 gi|34106464|gb|AAQ62233.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106470|gb|AAQ62236.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106472|gb|AAQ62237.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106476|gb|AAQ62239.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106478|gb|AAQ62240.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106480|gb|AAQ62241.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106482|gb|AAQ62242.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106486|gb|AAQ62244.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106492|gb|AAQ62247.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106494|gb|AAQ62248.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106498|gb|AAQ62250.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106500|gb|AAQ62251.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106502|gb|AAQ62252.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106504|gb|AAQ62253.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106506|gb|AAQ62254.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106508|gb|AAQ62255.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106510|gb|AAQ62256.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106512|gb|AAQ62257.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106514|gb|AAQ62258.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106516|gb|AAQ62259.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106520|gb|AAQ62261.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106522|gb|AAQ62262.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106524|gb|AAQ62263.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|34106554|gb|AAQ62278.1| NADH dehydrogenase subunit 6 [Vidua larvaticola]
 gi|34106558|gb|AAQ62280.1| NADH dehydrogenase subunit 6 [Vidua larvaticola]
 gi|34106584|gb|AAQ62293.1| NADH dehydrogenase subunit 6 [Vidua maryae]
 gi|34106586|gb|AAQ62294.1| NADH dehydrogenase subunit 6 [Vidua maryae]
 gi|34106634|gb|AAQ62318.1| NADH dehydrogenase subunit 6 [Vidua raricola]
 gi|34106638|gb|AAQ62320.1| NADH dehydrogenase subunit 6 [Vidua raricola]
 gi|34106672|gb|AAQ62337.1| NADH dehydrogenase subunit 6 [Vidua wilsoni]
 gi|34106674|gb|AAQ62338.1| NADH dehydrogenase subunit 6 [Vidua wilsoni]
 gi|59410417|gb|AAW84315.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|59410421|gb|AAW84317.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|59410429|gb|AAW84321.1| NADH dehydrogenase subunit 6 [Vidua camerunensis]
 gi|59410633|gb|AAW84422.1| NADH dehydrogenase subunit 6 [Vidua larvaticola]
 gi|59410657|gb|AAW84434.1| NADH dehydrogenase subunit 6 [Vidua maryae]
 gi|59410747|gb|AAW84479.1| NADH dehydrogenase subunit 6 [Vidua raricola]
 gi|59410759|gb|AAW84485.1| NADH dehydrogenase subunit 6 [Vidua raricola]
 gi|59410761|gb|AAW84486.1| NADH dehydrogenase subunit 6 [Vidua raricola]
 gi|59410763|gb|AAW84487.1| NADH dehydrogenase subunit 6 [Vidua wilsoni]
          Length = 159

 Score = 34.2 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 33/55 (60%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +
Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL 73


>gi|223468821|gb|ACM89975.1| NADH dehydrogenase subunit 6 [Accipiter gentilis]
          Length = 172

 Score = 34.2 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%)

Query: 5  SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
          + F  L     ++    V +  +P Y V  L+       G  + LG  FVA++  + Y+G
Sbjct: 2  AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSAMGCGWVVSLGVPFVALVLFMGYLG 61

Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89
           ++V F+  + M       +    +
Sbjct: 62 GMLVVFVSSVCMAADPFPESWGDWR 86


>gi|218681048|ref|ZP_03528945.1| putative monovalent cation/H+ antiporter subunit A [Rhizobium etli
           CIAT 894]
          Length = 419

 Score = 34.2 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 1/121 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           +    +A      V+  R+ + ++ SL       A +FLL GA  +A    +V   +V++
Sbjct: 293 WAVLLIAAFGLAAVLVARDRLTAIVSLGIQGFAVAIIFLLFGAPDLAFTQFMVETLSVVI 352

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128
             L ++  L +      P   R F G+  +  +A    V     + F     L  +    
Sbjct: 353 LAL-VMTRLLLSPGDRRPLAHRLFDGALALAWIAHGANVVNVIIVDFRGTDTLGEIASSR 411

Query: 129 N 129
           +
Sbjct: 412 S 412


>gi|89257244|ref|YP_514695.1| NADH dehydrogenase subunit 6 [Ranzania laevis]
 gi|86604658|dbj|BAE79241.1| NADH dehydrogenase subunit 6 [Ranzania laevis]
          Length = 173

 Score = 34.2 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 40/96 (41%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVVVAGLGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPY 78

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
             +   +    L   +  I+AA   +    +  FS 
Sbjct: 79  PESWGSRPVVMLMLVYTVIVAAVSGMFWGGWYEFSW 114


>gi|84579585|dbj|BAE72171.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
 gi|84579613|dbj|BAE72197.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
 gi|84579627|dbj|BAE72210.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
 gi|253960433|dbj|BAH84917.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
          Length = 173

 Score = 34.2 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 42/109 (38%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++    V +  +P ++   L+     + G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L   ++ ++    +  +  +   S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVMWASVFFSGGWFEGSW 114


>gi|331746977|ref|YP_004425122.1| NADH dehydrogenase subunit 6 [Rhinopithecus avunculus]
 gi|297340650|gb|ADI32817.1| NADH dehydrogenase subunit 6 [Rhinopithecus avunculus]
 gi|325652637|gb|ADZ37136.1| NADH dehydrogenase subunit 6 [Rhinopithecus avunculus]
          Length = 174

 Score = 34.2 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L S + I+      +  +PIY   +L+ + V    + L  G  ++ ++  ++Y
Sbjct: 1   MSYILF-LLSVLLIMGFVGFSSKPSPIYGGLALVISGVIGCIIILNYGGTYMGLMMFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109
           +G ++V F +    + I+            LGS  IG++    ++  
Sbjct: 60  LGGMMVVFGYT-TAMAIEEYPEAWVSGFEVLGSLLIGLMMEVGLILW 105


>gi|291002171|gb|ADD71176.1| NADH dehydrogenase subunit 6 [Oreochromis niloticus]
          Length = 173

 Score = 34.2 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++F F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V
Sbjct: 6   FMFLFGLVLGLAAVASNPSPYFAALGLVAVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNF 112
            F +   +               G + ++ +G+ AA  +     +
Sbjct: 66  VFAYSAALAAEPYPEGWGSWPVLGVMVAYLVGVCAAAGLFWGGWY 110


>gi|121709548|ref|XP_001272451.1| hypothetical protein ACLA_066610 [Aspergillus clavatus NRRL 1]
 gi|119400600|gb|EAW11025.1| hypothetical protein ACLA_066610 [Aspergillus clavatus NRRL 1]
          Length = 304

 Score = 34.2 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 9   YLFSFMAIISSFLVV--TVRNPIYSVFS--LIFAFVNAAGLFLLLG-AEFVAMITLVVYV 63
           +LF  MA++    ++  T  N +Y V    LI  FV  +G +  LG A+  A   +VV  
Sbjct: 187 FLFISMAVLMVIFMICATRTNVVYVVIFATLIIVFVLLSGAYWRLGVADATAGNRMVVGA 246

Query: 64  GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           GA     LF+  +L   + +A+     GF     +G L +  
Sbjct: 247 GAA----LFLASLLGFYLLIAQLFDSVGFPVRLPVGDLTSLW 284


>gi|49616800|ref|YP_044776.1| NADH dehydrogenase subunit 6 [Smaug warreni]
 gi|49256956|dbj|BAD24761.1| NADH dehydrogenase subunit 6 [Smaug warreni]
          Length = 172

 Score = 34.2 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 38/103 (36%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                 I+    V +   P Y V  L+++ +    + +L G  F++++  ++Y+G ++V 
Sbjct: 7   FLGLCFIVGVVSVASNPAPYYGVVGLVWSALVGCCVLVLSGVSFLSLVLFMIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           F + + +                     +G++          F
Sbjct: 67  FAYSVALASEPYPETWGNFGVMVHFLGGMGLVFVLAWWYLEGF 109


>gi|39972333|ref|XP_367557.1| hypothetical protein MGG_07468 [Magnaporthe oryzae 70-15]
 gi|145016655|gb|EDK01085.1| hypothetical protein MGG_07468 [Magnaporthe oryzae 70-15]
          Length = 1210

 Score = 34.2 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 151 FILLLSMIGAI---VLMLRHRRDIKRQDI--SKQLESNP-DNSIVMVKV 193
            ILL++ I  I    L  R RR+ ++QD      +  +P DN+  +V V
Sbjct: 11  LILLVAAIITILRSTLTNRGRRNAQKQDPDSPNAMMVDPIDNATHVVDV 59


>gi|46237744|ref|YP_005969.1| NADH dehydrogenase subunit 6 [Mola mola]
 gi|46092366|dbj|BAD14273.1| NADH dehydrogenase subunit 6 [Mola mola]
          Length = 173

 Score = 34.2 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 38/96 (39%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVVVAGLGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPY 78

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
             +   +    L   +  I+     +    +  FS 
Sbjct: 79  PESWGSRPVVVLMLVYTAIVVLVSGMFWGGWYEFSW 114


>gi|280978208|ref|YP_003345150.1| NADH dehydrogenase subunit 6 [Monognathus jesperseni]
 gi|271280704|dbj|BAI53521.1| NADH dehydrogenase subunit 6 [Monognathus jesperseni]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
               V +  +P Y+ F L+ A      L +  G  F++++  ++Y+G ++V F +
Sbjct: 14 GGFIGVASNPSPYYAAFGLVVAAGAGCILLMFTGGTFISLVLFLIYLGGMLVVFAY 69


>gi|32709245|gb|AAP86861.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 2/120 (1%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           +F    ++    V +  +P ++   L+       G+    G  F++++  ++Y+G ++V 
Sbjct: 7   IFLLGLVLGLTAVASNPSPYFAALGLVVVAGMGCGILSGYGGPFLSLVLFLIYLGGMLV- 65

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
            +F            E    R  L    + IL   ++        F             +
Sbjct: 66  -VFAYSAALAAEPFPETLGSRPVLAFMVVYILGGVILSSLFWEGWFEYAWVPGDEFGDYS 124


>gi|34106424|gb|AAQ62213.1| NADH dehydrogenase subunit 6 [Vidua purpurascens]
          Length = 159

 Score = 34.2 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 33/55 (60%)

Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76
          V +  +P Y V  L+ A +   G  + LG  FV+++ ++VY+G ++V F++ + +
Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL 73


>gi|74325213|ref|YP_313757.1| NADH dehydrogenase subunit 6 [Cypselurus hiraii]
 gi|73991766|dbj|BAE43655.1| NADH dehydrogenase subunit 6 [Cypselurus hiraii]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 38/106 (35%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
            +Y      I+    V +   P  +   L+       G   + G  + A+I L++Y+G +
Sbjct: 4   LWYTCLLSMILGMASVASNPIPHIAALFLVLVAGVGCGSLAIHGGTYFALILLIIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           ++ F++ + +                +   FI  +A    +    +
Sbjct: 64  LIVFVYSMALASDPYSEEWWVWSAAGVMGTFIFFVAVLAGMFWGGW 109


>gi|187250403|ref|YP_001874825.1| NADH dehydrogenase subunit 6 [Mecistops cataphractus]
 gi|145315408|gb|ABP62970.1| NADH dehydrogenase subunit 6 [Mecistops cataphractus]
          Length = 175

 Score = 34.2 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 3  MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
          M ++ F+L   M + S  LV       Y V SL+FA +  +GL +  G  FV ++ L++Y
Sbjct: 1  MGTMLFFLCCLMMV-SVVLVAFGVTIHYGVVSLLFAAMFGSGLLVAGGGSFVPLVVLLIY 59

Query: 63 VGAVIVFFLFIIMMLD 78
          +G ++V F F +   D
Sbjct: 60 LGGMLVVFAFCVGFTD 75


>gi|326917434|ref|XP_003205004.1| PREDICTED: protein PIEZO2-like [Meleagris gallopavo]
          Length = 2712

 Score = 34.2 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 35  LIFAFVNAAGLFLLLGAEFVAMIT--LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92
           L+ A      +++  G  F       +V+Y    +V FLF + +  +  E    R  + F
Sbjct: 644 LVMAMFIKYWIYVCGGMFFFVSFEGRIVMYKIIYMVLFLFCVALYQVHYE-WWRRILKYF 702

Query: 93  LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK------VLYTQYAYP- 145
             S  +  +   + +    F  F    + +      N + ++G        L+T+   P 
Sbjct: 703 WMSVVVYTMLVLIFIYTYQFESFPGLWK-NMTGLDENKLADLGLKRFSVAELFTRIFIPT 761

Query: 146 -LEISGFI 152
              ++  +
Sbjct: 762 SFLLACIL 769


>gi|119360217|ref|YP_913339.1| NADH dehydrogenase subunit 6 [Tinca tinca]
 gi|119225021|dbj|BAF41400.1| NADH dehydrogenase subunit 6 [Tinca tinca]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M    F L   + I+    V +   P ++   L+ A     G+ +  G  F++++  ++Y
Sbjct: 1   MTYFMFLLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGILVGCGGSFLSLVLFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122
           +G ++V F +   +       AEP  +     S    +L   L V     + +    E S
Sbjct: 60  LGGMLVVFAYSAAL------AAEPFPEAWGSRSVAGYVLVYLLGVVLMGALFWGDWYEGS 113

Query: 123 RLVFKG 128
            ++  G
Sbjct: 114 WVIIDG 119


>gi|240266554|ref|YP_002970926.1| NADH dehydrogenase subunit 6 [Leiocephalus personatus]
 gi|239735228|dbj|BAH70445.1| NADH dehydrogenase subunit 6 [Leiocephalus personatus]
          Length = 174

 Score = 34.2 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 8   FYLFSFMAIISSF-LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F    F  ++S    V    +P +    L+ +      + + LG  FV++I  ++Y+G +
Sbjct: 4   FMFLVFFCLVSGLVGVAANPSPFFGAAGLVVSAAFGCCILVELGVSFVSLILFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105
           +V F + + +              G     ++ ++    
Sbjct: 64  LVVFAYSVALASDPFPETWGSWSVGIYLLGYLSLVMWVW 102


>gi|197311197|ref|YP_002154567.1| NADH dehydrogenase subunit 6 [Paretroplus maculatus]
 gi|197304567|dbj|BAG69496.1| NADH dehydrogenase subunit 6 [Paretroplus maculatus]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 41/111 (36%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
             ++F F  I+    V +  +P ++   L+       G+ +  G  F++++  ++Y+G +
Sbjct: 4   LMFMFLFGLILGLAAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
           +V F +   +                +   ++        +C   +   S 
Sbjct: 64  LVVFAYSAALAAEPYPEGWGSWPVLGVMLAYVVGAGLASGLCWGGWYGESW 114


>gi|84488760|ref|YP_448853.1| NADH dehydrogenase subunit 6 [Indotestudo forstenii]
 gi|67005675|gb|AAY62470.1| NADH dehydrogenase subunit 6 [Indotestudo forstenii]
          Length = 174

 Score = 34.2 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%)

Query: 7   FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
           F  LF F  +     V    +P Y VFS++       G+ +++G  FV+++  ++Y+G +
Sbjct: 4   FMILFGFCFVFGMVGVSCSLSPYYGVFSMVLGAAFGCGMLVVMGGSFVSLVLFLIYLGGM 63

Query: 67  IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
           +V F +   +                 G  ++  +    ++  S +
Sbjct: 64  LVIFAYSCALAAEPFPGGWDGLVMIIYGLCYLVFVLLFALMDCSWW 109


>gi|84579571|dbj|BAE72158.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
 gi|253960419|dbj|BAH84904.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 42/109 (38%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++    V +  +P ++   L+     + G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L   ++ ++    +  +  +   S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVVCVSVFFSGGWFEGSW 114


>gi|14039372|gb|AAK53199.1| NADH dehydrogenase subunit 6 [Galaxias depressiceps]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +   P ++   L+ A     G+ +  G  F++++  ++Y+G ++V F +   +     
Sbjct: 19  VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78

Query: 82  EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112
             +   R   G++ ++F+G+L    +     +
Sbjct: 79  PESWGDRSVLGYVLAYFVGVLVIAGLFWGGWY 110


>gi|25057325|ref|NP_739904.1| NADH dehydrogenase subunit 6 [Beryx decadactylus]
 gi|25005871|dbj|BAC23500.1| NADH dehydrogenase subunit 6 [Beryx decadactylus]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 40/96 (41%), Gaps = 1/96 (1%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V F +   +   
Sbjct: 17  IAVASNPSPYFAALGLVVVAGLGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAE 76

Query: 80  DIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMV 114
               +   R   G++ ++ IG+           + V
Sbjct: 77  PYPESWGSRSVVGYVVAYSIGVFLVSGCFWGGWYEV 112


>gi|322784874|gb|EFZ11654.1| hypothetical protein SINV_05379 [Solenopsis invicta]
          Length = 1144

 Score = 34.2 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 12/99 (12%)

Query: 100  ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPL-----EISGFILL 154
            I    + +C        +       V    +V       +  Y          I+  ++L
Sbjct: 967  ITVIPMGICLGELTGVHSPDSHVPPVDDSTSVGA----FHDDYLLTFVLPAIIIAAMLIL 1022

Query: 155  LSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKV 193
              +I  +   L  RR   +  +S+Q +         + V
Sbjct: 1023 AGIIACV---LHKRRRSGKMSVSEQDDERQSFRSKGIPV 1058


>gi|218157257|ref|YP_002364414.1| NADH dehydrogenase subunit 6 [Pampus argenteus]
 gi|164370753|gb|ABY51660.1| NADH dehydrogenase subunit 6 [Pampus sp. LY-2009]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 40/104 (38%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++F    +I    V    +P ++  +L+     A G+ +     F +++  ++Y+G ++V
Sbjct: 6   FVFLLGLVIGLVAVAANPSPYFASLALVIVSGMACGVLIWYRGAFFSLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
            F +   +       +   +         +G+L    +     +
Sbjct: 66  VFAYSAALAAEPFPESWGNQGVMLNAMVHVGLLMFLYVYLGRKW 109


>gi|145315788|gb|ABP63323.1| NADH dehydrogenase subunit 6 [Sus scrofa]
          Length = 175

 Score = 34.2 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 1/99 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M     ++ S + +I      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MTMYIAFILSTIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101
           +G ++V F +    +  ++        +  LG+F  G++
Sbjct: 61  LGGMLVVFGYT-TAMATEMYPEVWVSNKTVLGAFVSGLM 98


>gi|84579683|dbj|BAE72262.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 41/109 (37%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     +     V +  +P ++   L+     + G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLVGLVFGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L   ++ ++    +  +  +   S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVVCVSVFFSGGWFEGSW 114


>gi|124055202|gb|ABM89810.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon]
 gi|124055216|gb|ABM89823.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon]
 gi|124055230|gb|ABM89836.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon]
          Length = 169

 Score = 34.2 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%)

Query: 21  LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80
            V +  +P +   SL  A V  A +   L + F++++ ++VY+G ++V F++ + M    
Sbjct: 15  GVASNPSPYFGGVSLALASVFGAVVMAGLSSTFISLVLMLVYLGGMLVVFIYSVAMSSDM 74

Query: 81  IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112
              A   +        F+G L          +
Sbjct: 75  YPEAWGNRSVFLYVIGFLGYLFCLWWYMGGKW 106


>gi|221052192|ref|XP_002257672.1| hypothetical protein, conserved in P. knowlesi [Plasmodium knowlesi
           strain H]
 gi|193807502|emb|CAQ38008.1| hypothetical protein, conserved in P. knowlesi [Plasmodium knowlesi
           strain H]
          Length = 375

 Score = 34.2 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 26/103 (25%)

Query: 88  KKRGFLGSFFIGILAAELIVCA------SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141
           K R F+    IGIL++ LIV          F         S  V    ++     +L+  
Sbjct: 273 KYRVFVPLVVIGILSSILIVFIVITEFSGTFSSLPLFAGFSGSVGSFTSI----VLLFIS 328

Query: 142 YAYPLEISGFILLLSMIGA---IVL--------MLRHRRDIKR 173
           Y  P            IGA   +VL        M R R+ IK+
Sbjct: 329 YLLPFMFVAL-----AIGAYDLLVLYYARKLDKMRRSRKYIKK 366


>gi|37596485|gb|AAQ95003.1| NADH dehydrogenase subunit 6 [Philetairus socius]
          Length = 159

 Score = 34.2 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M+ + F       ++    V +  +P Y V  L+ A V   G  + LG  FV+++ ++VY
Sbjct: 2   MEFVLF--LGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGGGWLVSLGVSFVSLVLVMVY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111
           +G ++V F++ + +        E     G +G  F   L   + +    
Sbjct: 60  LGGMLVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGLVVMVGLVMGG 106


>gi|5835385|ref|NP_008340.1|ND6_12183 NADH dehydrogenase subunit 6 [Latimeria chalumnae]
 gi|3122554|sp|O03175|NU6M_LATCH RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|1916829|gb|AAC60329.1| NADH dehydrogenase subunit 6 [Latimeria chalumnae]
 gi|121308893|dbj|BAF43547.1| NADH dehydrogenase subunit 6 [Latimeria chalumnae]
 gi|121308907|dbj|BAF43560.1| NADH dehydrogenase subunit 6 [Latimeria chalumnae]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 6   LFFYLFSFMAIISSFLVVTVRN-PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64
           ++F     M ++   + V     P ++   L+F+ V   G  +  G  F++++  ++Y+G
Sbjct: 2   IYFVFVVLMGLVVGLMAVASNPAPYFAALGLVFSAVVGCGFLVGYGGSFLSLVLFLIYLG 61

Query: 65  AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124
            ++V F +   +       AEP  +     S F+ IL          +  +    +   +
Sbjct: 62  GMLVVFAYSAAL------AAEPYPESWGSWSVFLYILVYLFGFLLVGYYCYGWWYDFYWM 115

Query: 125 VFK 127
              
Sbjct: 116 SLD 118


>gi|327199724|gb|AEA35991.1| NADH dehydrogenase subunit 6 [Cacatua moluccensis]
          Length = 172

 Score = 34.2 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 37/83 (44%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
                ++++  V +  +P Y V  L+   V   G  + LG  F++++  +VY+G ++V 
Sbjct: 7  FLGISFVLAALAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVSFMSLVLFMVYLGGMLVV 66

Query: 70 FLFIIMMLDIDIEVAEPRKKRGF 92
          F++ + +       A       +
Sbjct: 67 FVYSVSLAADPFPQAWGXXXXXW 89


>gi|300508201|dbj|BAJ10939.1| NADH dehydrogenase subunit 6 [Amolops larutensis]
          Length = 162

 Score = 34.2 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 32/76 (42%)

Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72
          F  ++   +V +  +P Y+   L+     +  + +  G  F+ +   +VY+G ++V F +
Sbjct: 5  FCLLMGLLVVASNPSPYYAALGLVVGAGASCFILVNEGLSFLPLTLFLVYLGGMMVVFAY 64

Query: 73 IIMMLDIDIEVAEPRK 88
             ++      A    
Sbjct: 65 SAALVAEPYPEAWGSH 80


>gi|157736227|ref|YP_001491368.1| NADH dehydrogenase subunit 6 [Trixiphichthys weberi]
 gi|139000729|dbj|BAF51892.1| NADH dehydrogenase subunit 6 [Trixiphichthys weberi]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    I+    V +   P ++ F L+       G+    G  F++++  ++Y+G ++V 
Sbjct: 7   LFMVGLILGLIAVASNPAPYFAAFGLVMVAGLGCGILAGHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNF 112
           F +   +       +            F  G+L A ++   S +
Sbjct: 67  FAYSAALAAEPFPESWGSWPVMGSTLVFSTGVLLASVLFWGSWY 110


>gi|5835538|ref|NP_007560.1|ND6_13726 NADH dehydrogenase subunit 6 [Oryctolagus cuniculus]
 gi|6093586|sp|O79438|NU6M_RABIT RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
 gi|3293018|emb|CAA04858.1| NADH dehydrogenase subunit 6 [Oryctolagus cuniculus]
          Length = 174

 Score = 34.2 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 3   MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62
           M  + F L S M ++      +  +PIY    LI +     G+ L  G  F+ ++  ++Y
Sbjct: 1   MTYVVF-LLSVMFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMMFLIY 59

Query: 63  VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110
           +G ++V F +   M   +            LG F +G+L    +V   
Sbjct: 60  LGGMLVVFGYTTAMATEEYPETWGSNV-MILGMFVLGVLMEVGLVVYM 106


>gi|313890212|ref|ZP_07823847.1| cell envelope-like function transcriptional attenuator common
           domain protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121573|gb|EFR44677.1| cell envelope-like function transcriptional attenuator common
           domain protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 488

 Score = 34.2 bits (78), Expect = 9.7,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 29  IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG-AVIVFFLFIIMMLDIDIEVAEPR 87
           I S   +++  ++    F++    F+A   L V +G A+   F   + ++     +++  
Sbjct: 22  INSALFVLYTLLSLTVAFMMYTYNFLAFRHLNVIIGVALSALFFLALFLI-----MSKKA 76

Query: 88  KKRGFLGSFFIGILAAELIVCASNFMVFSAE 118
           K    LG   + I  A ++    + +  +A+
Sbjct: 77  KWLTMLGMIIVNIALALVLFTFKSTIDLTAQ 107


>gi|25057168|ref|NP_739826.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
 gi|25005745|dbj|BAC23850.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 42/109 (38%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++    V +  +P ++   L+     + G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L   ++ ++    +  +  +   S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVVCVSVFFSGGWFEGSW 114


>gi|239618143|ref|YP_002941465.1| hypothetical protein Kole_1776 [Kosmotoga olearia TBF 19.5.1]
 gi|239506974|gb|ACR80461.1| hypothetical protein Kole_1776 [Kosmotoga olearia TBF 19.5.1]
          Length = 231

 Score = 34.2 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
          +FS + ++++  +V  +    +V         ++ + LLLGA  VA+    V V  VI+ 
Sbjct: 7  IFSSLYLLAALAIVGAKTNFKAVIWYGILGFFSSVMMLLLGAPDVALTQFTVGVTLVILV 66

Query: 70 FLFII 74
          ++  I
Sbjct: 67 YIMAI 71


>gi|221143496|ref|YP_002519509.1| NADH dehydrogenase subunit 6 [Paraluteres prionurus]
 gi|219806779|dbj|BAH10432.1| NADH dehydrogenase subunit 6 [Paraluteres prionurus]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 10  LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69
           LF    ++    V +  +P ++   L+       G+ L  G  F++++  ++Y+G ++V 
Sbjct: 7   LFLVGLVLGLLAVASNPSPYFAALGLVVVSGLGCGVLLGHGGSFLSLVLFLIYLGGMLVV 66

Query: 70  FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129
           F +   +       AEP  +        + +L    +V A + + +    E S +  +  
Sbjct: 67  FAYSSAL------AAEPYPESWGSKPVMVSMLWYVFVVGAVSGLFWGGWYEFSWVSVEEV 120

Query: 130 NV 131
           N+
Sbjct: 121 NI 122


>gi|16356965|ref|NP_443526.1| NADH dehydrogenase subunit 6 [Mugil cephalus]
 gi|16267029|dbj|BAB70181.1| NADH dehydrogenase subunit 6 [Mugil cephalus]
          Length = 173

 Score = 34.2 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 38/93 (40%)

Query: 22  VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81
           V +  +P ++   L+       G+ L  G  F++++ +++Y+G ++V F +   +     
Sbjct: 19  VASNPSPYFAALGLVVVAGMGCGILLGHGGSFLSLVLVLIYLGGMLVVFAYSAALAAEPY 78

Query: 82  EVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
                      + S +I  +   + + +  +  
Sbjct: 79  PEGWGDWPVMGMLSLYIACVLLSVNMFSGGWYW 111


>gi|219560213|gb|ACL27338.1| NADH dehydrogenase subunit 6 [Globicephala melas]
 gi|294679541|gb|ADF29582.1| NADH dehydrogenase subunit 6 [Globicephala melas]
 gi|326370262|gb|ADZ56102.1| NADH dehydrogenase subunit 6 [Globicephala melas]
          Length = 175

 Score = 34.2 bits (78), Expect = 10.0,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 1  MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
          MVM  +F  + S + +IS   V +  +PIY    LI       G+    G  F+ ++  +
Sbjct: 1  MVMYIIF--IMSTIFVISLVGVSSKPSPIYGGLGLIVGGAMGCGIVFSFGGSFLGLMVFL 58

Query: 61 VYVGAVIVFF 70
          +Y+G ++V F
Sbjct: 59 IYLGGMLVVF 68


>gi|148239303|ref|YP_001224690.1| subunit of the multisubunit Na+/H+ antiporter [Synechococcus sp.
          WH 7803]
 gi|147847842|emb|CAK23393.1| Predicted subunit of the Multisubunit Na+/H+ antiporter
          [Synechococcus sp. WH 7803]
          Length = 177

 Score = 34.2 bits (78), Expect = 10.0,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAA-GLFLLLGAEFVAMITLVVYVGAVIV 68
          + + + ++S  +V    NP Y    L   F + A  L++LLGA  VA+   +V  G ++ 
Sbjct: 22 ITALLPLVSVLMV-CQDNP-YQALMLRGVFGSVATLLYVLLGAPDVALTEAMV--GTLLS 77

Query: 69 FFLFIIMMLDIDIEVAEPRKK 89
            L++I +        E R+ 
Sbjct: 78 TTLYVIALRSSMTLRLEDRRS 98


>gi|197935718|ref|YP_002213662.1| NADH dehydrogenase subunit 6 [Chelydra serpentina]
 gi|78157492|gb|ABB22866.1| NADH dehydrogenase subunit 6 [Chelydra serpentina]
 gi|118412512|gb|ABK81689.1| NADH dehydrogenase subunit 6 [Chelydra serpentina]
          Length = 174

 Score = 34.2 bits (78), Expect = 10.0,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 40/95 (42%)

Query: 20  FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79
             V    +P Y V SL+    +   + +++G  FV+++  ++Y+G ++V F +   ++  
Sbjct: 17  VGVSCQPSPYYGVLSLVLGAASGCAVLVIMGGSFVSLVLFLIYLGGMLVLFAYSTALVAE 76

Query: 80  DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114
              +     +  F    ++  +    +     + V
Sbjct: 77  SGHIGWNYWESAFYVVIYVLCIVFAGVYYYWAWSV 111


>gi|71657950|ref|YP_272026.1| NADH dehydrogenase subunit 6 [Oreochromis mossambicus]
 gi|51011734|gb|AAT92278.1| NADH dehydrogenase subunit 6 [Oreochromis mossambicus]
          Length = 173

 Score = 34.2 bits (78), Expect = 10.0,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           ++F F  ++    V +  +P ++   L+       G+ +  G  F++++  ++Y+G ++V
Sbjct: 6   FMFLFGLVLGLAAVRSNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNF 112
            F +   +               G + ++ +G+ AA  +     +
Sbjct: 66  VFAYSAALAAEPYPEGWGSWPVLGVMVAYLVGVCAAAGLFWGGWY 110


>gi|84579655|dbj|BAE72236.1| NADH dehydrogenase subunit 6 [Oryzias latipes]
          Length = 173

 Score = 34.2 bits (78), Expect = 10.0,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 42/109 (38%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
           YL     ++    V +  +P ++   L+     + G+ +  G  F+++I  ++Y+G ++V
Sbjct: 6   YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65

Query: 69  FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117
            F +   +                L   ++ ++    +  +  +   S 
Sbjct: 66  VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVVCVSVFFSGGWFEGSW 114


>gi|223536|prf||0812187A cytochrome b
          Length = 459

 Score = 34.2 bits (78), Expect = 10.0,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%)

Query: 9  YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68
          ++ S + +     +    +PIY  F LI +      + L  G  F+ ++  ++Y+G ++V
Sbjct: 6  FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65

Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSF 96
           F +   M   +  +   RK        
Sbjct: 66 VFGYTTAMATEEYPMTNIRKSHPLFKII 93


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.319    0.179    0.541 

Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,343,991,644
Number of Sequences: 14124377
Number of extensions: 249748081
Number of successful extensions: 1475060
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 8675
Number of HSP's successfully gapped in prelim test: 16160
Number of HSP's that attempted gapping in prelim test: 1445048
Number of HSP's gapped (non-prelim): 37324
length of query: 199
length of database: 4,842,793,630
effective HSP length: 132
effective length of query: 67
effective length of database: 2,978,375,866
effective search space: 199551183022
effective search space used: 199551183022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 78 (34.2 bits)