BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62] (199 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62] gi|254040539|gb|ACT57335.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/199 (100%), Positives = 199/199 (100%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV Sbjct: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE Sbjct: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL Sbjct: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 Query: 181 ESNPDNSIVMVKVKSGKGI 199 ESNPDNSIVMVKVKSGKGI Sbjct: 181 ESNPDNSIVMVKVKSGKGI 199 >gi|315122716|ref|YP_004063205.1| NADH dehydrogenase subunit J [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496118|gb|ADR52717.1| NADH dehydrogenase subunit J [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 148 Score = 233 bits (595), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 115/144 (79%), Positives = 130/144 (90%) Query: 56 MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 MITLVVYVGAVIV FLFIIMMLDID+E A+PR+ R FLG+FFIGILAAEL VCASN +VF Sbjct: 1 MITLVVYVGAVIVLFLFIIMMLDIDVEEAKPRRNRPFLGAFFIGILAAELFVCASNLLVF 60 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 EGE+SRLVF+GNN E+IG+VLYT+Y YPLEISGFILLLSMIGAIVLMLRHR IKRQ+ Sbjct: 61 GLEGEVSRLVFRGNNTEDIGEVLYTKYIYPLEISGFILLLSMIGAIVLMLRHRPGIKRQN 120 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 ISKQL+SNP NS+ +VKVKSG+GI Sbjct: 121 ISKQLKSNPGNSVTVVKVKSGEGI 144 >gi|150396122|ref|YP_001326589.1| NADH dehydrogenase subunit J [Sinorhizobium medicae WSM419] gi|150027637|gb|ABR59754.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium medicae WSM419] Length = 222 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 108/213 (50%), Positives = 141/213 (66%), Gaps = 23/213 (10%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP+YSV LI F NAAGLFLL GAEF+AMI LV Sbjct: 19 MGLQALFFYLFAFIAVASAFMVIAAKNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 78 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVGAV V FLF++MMLDID AE R + +G+ ILAAELIV A + FS Sbjct: 79 VYVGAVAVLFLFVVMMLDIDF--AELRAGVLEYAPIGALIGMILAAELIVVAGGW-AFSP 135 Query: 118 EGELSRLVFKG-----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 E + KG N +G VLYT Y Y +I+G +LL++MIGAIVL LR Sbjct: 136 E------IAKGIAMPIPAPSERTNTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLR 189 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 HR++IKRQ I +Q+ P+ ++ +V VK G+GI Sbjct: 190 HRQNIKRQSIPQQVARTPETAVEVVTVKPGQGI 222 >gi|222085586|ref|YP_002544116.1| NADH-ubiquinone oxidoreductase chain J protein [Agrobacterium radiobacter K84] gi|221723034|gb|ACM26190.1| NADH-ubiquinone oxidoreductase chain J protein [Agrobacterium radiobacter K84] Length = 204 Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 105/207 (50%), Positives = 142/207 (68%), Gaps = 11/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFY+F+F+A+ S+F+V++ RNP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 1 MGLQALFFYIFAFVAVASAFMVISARNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G+ ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFSELRAGILEYAPIGALIGIILAAELIVVVGGSVI---SP 117 Query: 120 ELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 E++R V + N +G VLYT Y Y EI+G +LL++MIGAIVL LRHR IK Sbjct: 118 EIARSVAMPIPALTERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTHIK 177 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQ+IS+Q+ P ++ +VKVK G+G+ Sbjct: 178 RQNISQQVARTPATAVEVVKVKPGQGV 204 >gi|222148284|ref|YP_002549241.1| NADH dehydrogenase subunit J [Agrobacterium vitis S4] gi|221735272|gb|ACM36235.1| NADH ubiquinone oxidoreductase chain J [Agrobacterium vitis S4] Length = 204 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 101/204 (49%), Positives = 137/204 (67%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++FFYLF+F+A+ S+F+V++ RNP++SV LI FVNAAGLF+L GAEF+AMI LV Sbjct: 1 MGLQAIFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFVNAAGLFMLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ K G L + I+AAELI + A Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGASKYGPLAALIGAIVAAELIFVIGGSAISPAAK 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y + +I+G +LL++MIGAIVL LRHR+ IKRQ+ Sbjct: 121 QAITMPIPALADRQNTAALGDVLYTNYVFFFQIAGLVLLVAMIGAIVLTLRHRQHIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q+ P +I +VKVK G+GI Sbjct: 181 IAHQVARGPATAIKVVKVKPGQGI 204 >gi|15965028|ref|NP_385381.1| NADH dehydrogenase subunit J [Sinorhizobium meliloti 1021] gi|307301100|ref|ZP_07580869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti BL225C] gi|307317834|ref|ZP_07597272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti AK83] gi|15074207|emb|CAC45854.1| Probable NADH dehydrogenase I chain J transmembrane protein [Sinorhizobium meliloti 1021] gi|306896596|gb|EFN27344.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti AK83] gi|306904055|gb|EFN34641.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti BL225C] Length = 204 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 106/211 (50%), Positives = 138/211 (65%), Gaps = 19/211 (9%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ RNP+YSV LI F NAAGLFLL GAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFIAVASAFMVIAARNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G+ ILAAELIV FS E Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGALIGLILAAELIVVVGG-SAFSPE- 118 Query: 120 ELSRLVFKG-----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + KG N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR Sbjct: 119 -----IAKGIAMPIPAPSERTNTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLRHR 173 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 ++IKRQ I +Q+ P+ ++ +V VK G+GI Sbjct: 174 QNIKRQSIPQQVARTPETAVEVVTVKPGQGI 204 >gi|163759531|ref|ZP_02166616.1| NADH dehydrogenase subunit J [Hoeflea phototrophica DFL-43] gi|162283128|gb|EDQ33414.1| NADH dehydrogenase subunit J [Hoeflea phototrophica DFL-43] Length = 204 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/205 (49%), Positives = 139/205 (67%), Gaps = 7/205 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFY+F+F+A+ S+F+V+ RNP++SV LI F NAAGLFLL GAEF+AMI LV Sbjct: 1 MGLQALFFYMFAFVAVASAFMVIAARNPVHSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G+ ILAAELI+ FS Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTEMKSGALEYAPVGALVGIILAAELIIVLGG-NAFSPSA 119 Query: 120 ELS-----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S + + +N + +G VLYT Y + +I+G +L ++MIGAIVL LRHR IKRQ Sbjct: 120 ATSGANPIPALSERSNTQALGDVLYTDYIFFFQIAGLVLFVAMIGAIVLTLRHREHIKRQ 179 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 DI++Q+ P+ ++ +VKVK G+GI Sbjct: 180 DINQQVARTPETAVEVVKVKPGQGI 204 >gi|227821628|ref|YP_002825598.1| NADH dehydrogenase subunit J [Sinorhizobium fredii NGR234] gi|227340627|gb|ACP24845.1| NADH dehydrogenase subunit J [Sinorhizobium fredii NGR234] Length = 204 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 106/206 (51%), Positives = 140/206 (67%), Gaps = 9/206 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q LFFYLF+F+A+ S+F+V+ +NP+YSV LI F NAAGLFLL GAEF+AMI LV Sbjct: 1 MGLQVLFFYLFAFIAVASAFMVIAAKNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELI--VCASNFMVF 115 VYVGAV V FLF++MMLDID AE R + +G+ ILAAELI V S F Sbjct: 61 VYVGAVAVLFLFVVMMLDIDF--AELRAGVLEYAPVGALIGLILAAELIIVVGGSTFSPE 118 Query: 116 SAEGELSRL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 A+G + V + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IKR Sbjct: 119 IAKGIAMPIPAVTERTNTAALGDVLYTHYIYFFQIAGLVLLVAMIGAIVLTLRHRENIKR 178 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q I +Q+ +P+ ++ +V VK G+G+ Sbjct: 179 QSIPRQVARSPETAVEVVTVKPGQGL 204 >gi|15888608|ref|NP_354289.1| NADH dehydrogenase subunit J [Agrobacterium tumefaciens str. C58] gi|15156330|gb|AAK87074.1| NADH ubiquinone oxidoreductase chain J [Agrobacterium tumefaciens str. C58] Length = 204 Score = 181 bits (458), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 135/206 (65%), Gaps = 9/206 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++FFY+F+F+A+ S+F+V+ +NP++SV LI F NAA LFLL GAEF+AMI LV Sbjct: 1 MGLHAVFFYIFAFVAVASAFMVIASKNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVGAV V FLF++MMLD+D AE R + +G+ ILAAELIV M+ Sbjct: 61 VYVGAVAVLFLFVVMMLDVDF--AELRSGVLQYAPIGALIGVILAAELIVVVGGSMLNPI 118 Query: 118 EGELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + N +G VLYT Y Y +++G +LL++MIGAIVL LRHR DIKR Sbjct: 119 AAKSITMPIPPAAERTNTAALGDVLYTNYVYFFQLAGLVLLVAMIGAIVLTLRHRTDIKR 178 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDIS Q+ +P ++ VKVK G+GI Sbjct: 179 QDISTQVGRDPKTAVTTVKVKPGQGI 204 >gi|209548873|ref|YP_002280790.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534629|gb|ACI54564.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 204 Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 139/207 (67%), Gaps = 11/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 117 Query: 120 ELSRLVF-------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 E+++ V + N +G VLYT Y Y EI+G +LL++MIGAIVL LRHR +IK Sbjct: 118 EIAKSVAMPIPALSERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTNIK 177 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQ+I +Q+ P ++ +V VK G+G+ Sbjct: 178 RQNIPRQVARTPATAVEVVSVKPGQGV 204 >gi|116251476|ref|YP_767314.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. viciae 3841] gi|115256124|emb|CAK07205.1| putative NADH-quinone oxidoreductase subunit 10 [Rhizobium leguminosarum bv. viciae 3841] Length = 204 Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 101/207 (48%), Positives = 139/207 (67%), Gaps = 11/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGVILAAELIVVIGGSVI---SP 117 Query: 120 ELSRLVF-------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 E+++ V + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IK Sbjct: 118 EIAKTVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 177 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQ+I +Q+ P ++ +V VK G+G+ Sbjct: 178 RQNIPRQVARTPATAVEVVSVKPGQGV 204 >gi|241204097|ref|YP_002975193.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857987|gb|ACS55654.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 204 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/207 (48%), Positives = 139/207 (67%), Gaps = 11/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGVILAAELIVVIGGSVI---SP 117 Query: 120 ELSRLVF-------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 E+++ V + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IK Sbjct: 118 EIAKSVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 177 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQ+I +Q+ P ++ +V VK G+G+ Sbjct: 178 RQNIPRQVARTPATAVKVVSVKPGQGV 204 >gi|86357248|ref|YP_469140.1| NADH dehydrogenase subunit J [Rhizobium etli CFN 42] gi|86281350|gb|ABC90413.1| NADH-ubiquinone oxidoreductase chain J protein [Rhizobium etli CFN 42] Length = 204 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/207 (48%), Positives = 140/207 (67%), Gaps = 11/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 117 Query: 120 ELSRLVF-------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 ++++ V + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IK Sbjct: 118 DIAKSVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 177 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQ+IS+Q+ P ++ +V VK G+G+ Sbjct: 178 RQNISRQVARTPATAVEVVSVKPGQGV 204 >gi|218679751|ref|ZP_03527648.1| NADH dehydrogenase subunit J [Rhizobium etli CIAT 894] Length = 206 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 138/207 (66%), Gaps = 11/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+AI S+F+V+ +NP++SV LI F NAAGLFLL GAEF+AMI LV Sbjct: 3 MGLQALFFYLFAFVAIASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLAGAEFLAMILLV 62 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 63 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 119 Query: 120 ELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 E+++ V + N +G VLYT Y Y EI+G +LL++MIGAIVL LRHR +IK Sbjct: 120 EIAKSVAMPIPALTERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTNIK 179 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQ+I +Q+ P ++ +V VK G+G+ Sbjct: 180 RQNIPRQVARTPATAVEVVSVKPGQGV 206 >gi|327188497|gb|EGE55711.1| NADH dehydrogenase subunit J [Rhizobium etli CNPAF512] Length = 251 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/207 (48%), Positives = 139/207 (67%), Gaps = 11/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 48 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 107 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 108 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 164 Query: 120 ELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 E+++ V + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IK Sbjct: 165 EIAKTVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 224 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQ+I +Q+ P ++ +V VK G+G+ Sbjct: 225 RQNIPRQVARTPATAVEVVSVKPGQGV 251 >gi|190891296|ref|YP_001977838.1| NADH-ubiquinone oxidoreductase, chain J [Rhizobium etli CIAT 652] gi|190696575|gb|ACE90660.1| NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli CIAT 652] Length = 204 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/207 (48%), Positives = 138/207 (66%), Gaps = 11/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+AI S+F+V+ +NP++SV LI F NAAGLFLL GAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFVAIASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLAGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 117 Query: 120 ELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 E+++ V + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IK Sbjct: 118 EIAKTVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 177 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQ+I +Q+ P ++ +V VK G+G+ Sbjct: 178 RQNIPRQVARTPATAVEVVSVKPGQGV 204 >gi|218462498|ref|ZP_03502589.1| NADH dehydrogenase subunit J [Rhizobium etli Kim 5] Length = 230 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/207 (48%), Positives = 139/207 (67%), Gaps = 11/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 27 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 86 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 87 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVI---SP 143 Query: 120 ELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 E+++ V + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IK Sbjct: 144 EIAKSVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIK 203 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQ+I +Q+ P ++ +V VK G+G+ Sbjct: 204 RQNIPRQVARTPATAVEVVTVKPGQGV 230 >gi|325292643|ref|YP_004278507.1| NADH dehydrogenase I chain J [Agrobacterium sp. H13-3] gi|325060496|gb|ADY64187.1| NADH dehydrogenase I chain J [Agrobacterium sp. H13-3] Length = 204 Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 135/206 (65%), Gaps = 9/206 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++FFY+F+F+A+ S+F+V+ +NP++SV LI F NAA LFLL GAEF+AMI LV Sbjct: 1 MGLHAVFFYIFAFVAVASAFMVIASKNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVGAV V FLF++MMLD+D AE R + +G+ ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDVDF--AELRSGVLQYAPIGALIGIILAAELIVVVGGSVLNPQ 118 Query: 118 EGELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + N +G VLYT Y Y +++G +LL++MIGAIVL LRHR DIKR Sbjct: 119 AAKSITMPIPSPAVRTNTAALGDVLYTNYVYFFQLAGLVLLVAMIGAIVLTLRHRTDIKR 178 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q+IS Q+ +P ++ VKVK G+GI Sbjct: 179 QNISTQVGRDPKTAVTTVKVKPGQGI 204 >gi|260462241|ref|ZP_05810485.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium opportunistum WSM2075] gi|259032101|gb|EEW33368.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 98/205 (47%), Positives = 138/205 (67%), Gaps = 11/205 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FFYLF+F+A+ S+F+V++ RNP++SV LI F NAAGLF+L GAEF+AMI LVVY Sbjct: 5 LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV+V FLF++MMLD+D E+ E + +G+ ILAAELIV ++ +L Sbjct: 65 VGAVMVLFLFVVMMLDVDFAEMKEGALQYAPIGALVGLILAAELIVVLGG---YTFAPQL 121 Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + V K +N +G +LYT Y Y +ISG ILL++MIGAIVL LRH+ +KRQ Sbjct: 122 ASTVAKPIPDLAARSNTAALGDILYTDYLYYFQISGLILLVAMIGAIVLTLRHKEGVKRQ 181 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q+ P + + KVKSG+G+ Sbjct: 182 SIAAQVGRTPATGMEIRKVKSGEGV 206 >gi|13471397|ref|NP_102963.1| NADH dehydrogenase subunit J [Mesorhizobium loti MAFF303099] gi|14022139|dbj|BAB48749.1| NADH-ubiquinone dehydrogenase chain 10 [Mesorhizobium loti MAFF303099] Length = 206 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/203 (46%), Positives = 137/203 (67%), Gaps = 7/203 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FFYLF+F+A+ S+F+V++ RNP++SV LI F NAAGLF+L GAEF+AMI LVVY Sbjct: 5 LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFS 116 VGAV+V FLF++MMLD+D E+ E + +G+ ILAAELI+ + + + Sbjct: 65 VGAVMVLFLFVVMMLDVDFAEMKEGALQYAPIGALVGLILAAELIIVLGGYTFAPKLAAT 124 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + L + +N +G +LYT Y Y +ISG ILL++MIGAIVL LRH+ +KRQ I Sbjct: 125 VSKPIPDLATR-SNTAALGDILYTDYLYYFQISGLILLVAMIGAIVLTLRHKEGVKRQSI 183 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 + Q+ P + + KVKSG+G+ Sbjct: 184 AAQVGRTPATGMEIRKVKSGEGV 206 >gi|295689615|ref|YP_003593308.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Caulobacter segnis ATCC 21756] gi|295431518|gb|ADG10690.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Caulobacter segnis ATCC 21756] Length = 205 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/207 (47%), Positives = 137/207 (66%), Gaps = 12/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYL +F+ I + LVV+ RNP++SV LI AF +AAGLF+LLGAEF+AM+ +V Sbjct: 1 MALQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMV- 114 VYVGAV V FLF++MMLD+D AE R+ GF +G GIL E+I A+ Sbjct: 61 VYVGAVAVLFLFVVMMLDVDF--AELRQ--GFAQYLPIGGLVGGILTLEMIFVAATVATN 116 Query: 115 -FSAEGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +A+ L G N E IG+VLYT Y + +++G +LL++MIGAIVL LRH+ +K Sbjct: 117 GAAAKNGLPNASPGGVPNTEAIGRVLYTDYIFFFQLAGLVLLVAMIGAIVLTLRHKPGVK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQDI KQ+ P + +V++K G+GI Sbjct: 177 RQDIGKQVARTPKTGMTLVQIKPGEGI 203 >gi|319782991|ref|YP_004142467.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168879|gb|ADV12417.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 95/205 (46%), Positives = 136/205 (66%), Gaps = 11/205 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FFYLF+F+A+ S+F+V++ RNP++SV LI F NAAGLF+L GAEF+AMI LVVY Sbjct: 5 LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV+V FLF++MMLD+D E+ + +G+ ILAAELIV ++ +L Sbjct: 65 VGAVMVLFLFVVMMLDVDFAELKSGALQYAPIGALVGLILAAELIVVLGG---YTFAPQL 121 Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + V K N +G +LYT Y Y +ISG +LL++MIGAIVL LRH+ +KRQ Sbjct: 122 ASTVSKPIPDLATRTNTAALGDILYTDYLYYFQISGLVLLVAMIGAIVLTLRHKPGVKRQ 181 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q+ P + + KVK+G+G+ Sbjct: 182 SIAAQVGRTPATGMEIRKVKTGEGL 206 >gi|312116311|ref|YP_004013907.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodomicrobium vannielii ATCC 17100] gi|311221440|gb|ADP72808.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodomicrobium vannielii ATCC 17100] Length = 200 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 96/201 (47%), Positives = 135/201 (67%), Gaps = 4/201 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FFYLFS + I S +V++ RNP++SV LI AF+NAAGLF+LLGAEF+AMI ++ Sbjct: 1 MTIAGYFFYLFSIVLISSGAMVISARNPVHSVLFLILAFLNAAGLFVLLGAEFLAMILVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++M LDID R +G +L ELI+ F + A G Sbjct: 61 VYVGAVAVLFLFVVMTLDIDFGQLRKGMSRYLPIGILVGLVLVTELILVVGGFTM--APG 118 Query: 120 ELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + + + +N E IG+VLYT Y Y ++SG +LL++MIGAIVL LRHR D KRQ++++ Sbjct: 119 AIRPVASAQVSNTEAIGRVLYTDYLYFFQLSGLVLLVAMIGAIVLTLRHRPDSKRQNVAR 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ +++I +VKV++GKGI Sbjct: 179 QVGRKREDAIEVVKVETGKGI 199 >gi|110633385|ref|YP_673593.1| NADH dehydrogenase subunit J [Mesorhizobium sp. BNC1] gi|110284369|gb|ABG62428.1| NADH dehydrogenase subunit J [Chelativorans sp. BNC1] Length = 206 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/203 (43%), Positives = 139/203 (68%), Gaps = 7/203 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++++FFYLF+F+ + ++F+V++ RNP++SV LI F NAA LFLL GAEF+AMI L+VY Sbjct: 5 LEAIFFYLFAFIGVAAAFMVISARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLIVY 64 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--- 118 VGAV V FLF++MMLD+D E+ + + +G+ ILA ELIV + F+ E Sbjct: 65 VGAVAVLFLFVVMMLDVDFAELKQGALQYAPVGAIVGIILAVELIVVLGGY-AFTPEIAA 123 Query: 119 --GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + + + +N +G +LYT Y Y +++G ILL++M+GAIVL LRH+ +++RQ+I Sbjct: 124 EIAQPAPAIAERHNTAALGDILYTNYFYFFQVAGLILLVAMVGAIVLTLRHKPNVRRQNI 183 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 + Q+ P +I + KV++G+GI Sbjct: 184 AAQVARTPATAIEIRKVETGEGI 206 >gi|146341104|ref|YP_001206152.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. ORS278] gi|146193910|emb|CAL77927.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) (NDH-1, chain J) [Bradyrhizobium sp. ORS278] Length = 212 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 136/206 (66%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +V+ +NP++SV LI AFVNA+GLF+L+GAEF+AMI +V Sbjct: 1 MILPALFFYLFAAVCVASAVMVIVSKNPVHSVLYLILAFVNASGLFVLMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFMVF 115 VYVGAV V FLF+IMMLD+D + GFL IG++ EL++ S +++ Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFT----ELREGFLQYMPIGLVIGGIFLFELLLTVSYWVIN 116 Query: 116 SAEGELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + N N E +G VLYT+Y + ++SG ILL++MIGAIVL LRH+ +KR Sbjct: 117 PSTPKAITAAIPTNVTNTEALGLVLYTKYVHYFQLSGMILLVAMIGAIVLTLRHKASVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDI+ Q PD ++ + KV G+G+ Sbjct: 177 QDINVQNARTPDMAMAVRKVAVGQGL 202 >gi|167646785|ref|YP_001684448.1| NADH dehydrogenase subunit J [Caulobacter sp. K31] gi|167349215|gb|ABZ71950.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Caulobacter sp. K31] Length = 203 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 92/205 (44%), Positives = 130/205 (63%), Gaps = 12/205 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ++ FYL + +++ LVV+ RNP++SV LI AF +AAGLF+LLGAEF+AM+ +VVY Sbjct: 1 MQAIAFYLLAVATVVAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA 117 VGAV V FLF++MMLD+D ++GF +G G L E+I A+ Sbjct: 61 VGAVAVLFLFVVMMLDVDFT----ELRQGFAQYLPIGGLVAGFLTLEMIFIAATVATNGK 116 Query: 118 EG--ELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G L G N E IG+VLYT Y + +++G +LL++MIGAIVL LRH+ +KRQ Sbjct: 117 AGLNALPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKAGVKRQ 176 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 DI KQ+ P + +V++K G+GI Sbjct: 177 DIGKQIARTPKTGMEIVQIKPGEGI 201 >gi|307942128|ref|ZP_07657479.1| NADH-quinone oxidoreductase subunit j [Roseibium sp. TrichSKD4] gi|307774414|gb|EFO33624.1| NADH-quinone oxidoreductase subunit j [Roseibium sp. TrichSKD4] Length = 204 Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 94/208 (45%), Positives = 142/208 (68%), Gaps = 13/208 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FFYLF+ + + S+F+V+ RNP++SV LI AFVN+AGLF+LLGAE++AM+ +V Sbjct: 1 MFLNAFFFYLFAGVTVASAFMVIAARNPVHSVLFLILAFVNSAGLFVLLGAEYLAMLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFM-- 113 VYVGAV V FLF++MM+D+D AE R+ GFL G L EL++ S ++ Sbjct: 61 VYVGAVAVLFLFVVMMMDVDF--AELRQ--GFLQYLPAGALVGLVLLIELLMGVSAWILA 116 Query: 114 --VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + E + + + +N+E IG+VLYT+Y Y ++SG +LL++MIGAIVL LRH+ Sbjct: 117 PGLIGQGSEPTPALNEVSNIEAIGQVLYTKYIYFFQVSGLVLLVAMIGAIVLTLRHKPYA 176 Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199 KRQDI+ Q+ ++++ + KV++GKGI Sbjct: 177 KRQDIATQVGRRREDAVEVRKVETGKGI 204 >gi|329850719|ref|ZP_08265564.1| NADH-quinone oxidoreductase subunit J [Asticcacaulis biprosthecum C19] gi|328841034|gb|EGF90605.1| NADH-quinone oxidoreductase subunit J [Asticcacaulis biprosthecum C19] Length = 204 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 132/206 (64%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FYL + + +++ LVVT RNP++SV LI AF +AAGLF+LLGAEF+AM+ +V Sbjct: 1 MTLMAIAFYLMAAVTLVAGLLVVTARNPVHSVLYLILAFFSAAGLFVLLGAEFLAMLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL-----GSFFIGILAAELIVCASNFMVF 115 VYVGAV V FLF++MMLD+D + ++GF G+ GILA ELI Sbjct: 61 VYVGAVAVLFLFVVMMLDVDF----IKLRQGFANYLAPGAVVAGILAFELIFVGWAVAGR 116 Query: 116 SAEGELSRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 A + + N++ IG LYT YAY E +GF+LL++MIGAIVL LRHR +KR Sbjct: 117 GAAAGNAPQAARPDATNIQTIGLELYTTYAYVFEAAGFVLLVAMIGAIVLTLRHRTYVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDI KQ+ +++ +V K+G+GI Sbjct: 177 QDIYKQVTRRRKDAVAVVPAKTGEGI 202 >gi|299135023|ref|ZP_07028214.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Afipia sp. 1NLS2] gi|298590000|gb|EFI50204.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Afipia sp. 1NLS2] Length = 212 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 138/206 (66%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +VVT RNP++SV LI FVNAAGLF+LL AEF+AMI +V Sbjct: 1 MILPALFFYLFAGVCVASAVMVVTARNPVHSVLFLILTFVNAAGLFVLLNAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVF 115 VYVGAV V FLF+IMMLD+D AE R+ GF+ +G+L AEL++ A +++ Sbjct: 61 VYVGAVAVLFLFVIMMLDVDF--AELRQ--GFIEYLPVGLLIGAIFLAELLLVAGGWVLS 116 Query: 116 S--AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 A + + N E IG VLYT+Y + +++G +LL++MIGAIVL LRH+ +KR Sbjct: 117 PNVAHSITAPIPATVTNTEAIGLVLYTRYIHYFQLAGLVLLVAMIGAIVLTLRHKPSVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q+IS Q ++ + +V SG+G+ Sbjct: 177 QNISAQNARGKATAMAVRQVPSGQGL 202 >gi|254469512|ref|ZP_05082917.1| NADH-quinone oxidoreductase chain j [Pseudovibrio sp. JE062] gi|211961347|gb|EEA96542.1| NADH-quinone oxidoreductase chain j [Pseudovibrio sp. JE062] Length = 204 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/208 (48%), Positives = 148/208 (71%), Gaps = 13/208 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+Q+LFFYLF+ +A+ S+F+V+ RNP++SV LI F NAAGLF+L+GAE++AM+ +V Sbjct: 1 MVLQALFFYLFAALAVASAFMVIASRNPVHSVLFLILCFFNAAGLFVLIGAEYLAMLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVF 115 VYVGAV+V FLF++MMLD+D AE R+ GFL IG IL EL++ S + + Sbjct: 61 VYVGAVMVLFLFVVMMLDVDF--AEMRQ--GFLQYLPIGALIGVILLVELLMVVSGWYIA 116 Query: 116 S---AEGEL-SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 EG + V + N+ IG++LYT+Y Y +++G +LL++MIGAIVL LRH+ + Sbjct: 117 PGMLGEGSAPTPPVEQTQNIAAIGELLYTRYIYWFQVAGLVLLVAMIGAIVLTLRHKPGV 176 Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199 +RQ+IS+Q+ P+ +I +VKV+SGKG+ Sbjct: 177 RRQNISEQVARRPETAIEVVKVESGKGL 204 >gi|114771828|ref|ZP_01449221.1| NADH dehydrogenase subunit J [alpha proteobacterium HTCC2255] gi|114547644|gb|EAU50535.1| NADH dehydrogenase subunit J [alpha proteobacterium HTCC2255] Length = 204 Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 5/197 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS A++S+ VV RNP++SV LI F +AA +F+L+GAEFVAM+ +VYVGAV Sbjct: 8 FYLFSITAVMSALFVVVARNPVHSVLWLILTFFSAASMFVLMGAEFVAMLLAIVYVGAVA 67 Query: 68 VFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL----S 122 V FLF++MMLD+D +E+ +K +GS +L EL + S++ V G L + Sbjct: 68 VLFLFVVMMLDVDFVELKSGMQKYFLIGSSIGLVLLMELGLVISHWKVAPEAGSLLQSPT 127 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N +G++LY+ Y Y +I+G ILL +MIGAIVL LRHR D+KRQ + Q++ Sbjct: 128 PPIDTTHNTLALGQILYSDYIYLFQIAGLILLTAMIGAIVLTLRHRTDVKRQSVVDQMQR 187 Query: 183 NPDNSIVMVKVKSGKGI 199 +P +++ ++ VK G+G+ Sbjct: 188 DPADAMEVITVKPGQGL 204 >gi|209885061|ref|YP_002288918.1| j subunit of NADH dehydrogenase i [Oligotropha carboxidovorans OM5] gi|209873257|gb|ACI93053.1| j subunit of NADH dehydrogenase i [Oligotropha carboxidovorans OM5] Length = 212 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 134/206 (65%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +VVT RNP++SV LI FVNAAGLF+LL AEF+AMI +V Sbjct: 1 MILPALFFYLFAGVCVASAVMVVTARNPVHSVLFLILTFVNAAGLFVLLNAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFMVF 115 VYVGAV V FLF+IMMLD+D ++GF+ +G+L EL++ +++ Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFAA----LRQGFIEYLPVGLLVGAIFLVELLLVVGGWVLS 116 Query: 116 S--AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 A + + N E IG VLYT+Y + +++G +LL++MIGAIVL LRH+ ++KR Sbjct: 117 PDVAHSITAPIPTTVTNTEAIGLVLYTRYIHYFQLAGLVLLVAMIGAIVLTLRHKPNVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q+IS Q +I M KV G+G+ Sbjct: 177 QNISVQNARGKATAIAMRKVAPGQGL 202 >gi|27380019|ref|NP_771548.1| NADH dehydrogenase subunit J [Bradyrhizobium japonicum USDA 110] gi|27353173|dbj|BAC50173.1| NADH ubiquinone oxidoreductase chain J [Bradyrhizobium japonicum USDA 110] Length = 212 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/202 (44%), Positives = 134/202 (66%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +V+ RNP++SV LI AFVNA+GLF+L+GAEF+ M+ +V Sbjct: 1 MILPALFFYLFAGVCVASAVMVIVSRNPVHSVLYLILAFVNASGLFVLMGAEFLGMMLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF+IMMLD+D +E+ E + +G GI EL++ +++ Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFLELREGFIEYLPVGLVIGGIFLFELLLTVGFWVINPGVS 120 Query: 120 ELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + N N E +G VLYT+Y Y +++G +LL++MIGAIVL LRH+ +KRQDI+ Sbjct: 121 KTITAAIPTNVSNTEALGLVLYTKYVYYFQLAGMVLLVAMIGAIVLTLRHKVSVKRQDIN 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q PD ++ M KV G+G+ Sbjct: 181 VQNARTPDMAMAMRKVAPGQGL 202 >gi|75676069|ref|YP_318490.1| NADH dehydrogenase subunit J [Nitrobacter winogradskyi Nb-255] gi|74420939|gb|ABA05138.1| NADH dehydrogenase subunit J [Nitrobacter winogradskyi Nb-255] Length = 212 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 141/206 (68%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +V++ RNP++SV LI AFVNAAGLF+L+GAEF+AMI +V Sbjct: 1 MILPALFFYLFAGVCVASAAMVISSRNPVHSVLFLILAFVNAAGLFILMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAE 118 VYVGAV V FLF+IMMLD+D AE R+ GFL G++ A + + +V ++ Sbjct: 61 VYVGAVAVLFLFVIMMLDVDF--AELRE--GFLEYLPFGLVIAAIFLLELLLVVGGWTLN 116 Query: 119 GELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 +++ + +N E +G VLYT+Y + +++G +LL++MIGAIVL LRHR +KR Sbjct: 117 PAVTKSITAAIPGDVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHRAGVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDI+ Q P+ ++ + +V SG+G+ Sbjct: 177 QDINVQNARTPEMAMSVRQVASGQGL 202 >gi|115524539|ref|YP_781450.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisA53] gi|115518486|gb|ABJ06470.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] Length = 212 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 131/206 (63%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + LFFYL+S + S+ +V+ RNP+++V LI F N+AGLF+LLGAEF+AMI ++ Sbjct: 1 MTLPDLFFYLYSAGCVASAVMVIVSRNPVHAVLFLILVFANSAGLFVLLGAEFLAMILVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115 VYVGAV V FLF+IMMLDID + + + GFL +G+L + + + Sbjct: 61 VYVGAVAVLFLFVIMMLDIDFK----QLREGFLSHLPVGLLVGAVFLAELLLLAAGWAIR 116 Query: 116 -SAEGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + ++ + G N E +G VLYT Y + +I+G +LL+SMIGAIVL +RHR +KR Sbjct: 117 PTVTKAITSPIPSGVGNTEALGLVLYTTYIHYFQIAGMVLLVSMIGAIVLTMRHRSSVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDI+ Q +P+ ++ + KV SG+G+ Sbjct: 177 QDIAAQNARSPETAMAVRKVASGQGL 202 >gi|90417834|ref|ZP_01225746.1| NADH dehydrogenase I, J subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337506|gb|EAS51157.1| NADH dehydrogenase I, J subunit [Aurantimonas manganoxydans SI85-9A1] Length = 205 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/207 (45%), Positives = 135/207 (65%), Gaps = 15/207 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++FFYLF+ +A+ S +VV RNP++SV LI FV AAGLFLL GAEF+A+I +VVY Sbjct: 4 LQAVFFYLFALVAVGSGLMVVLARNPVHSVLFLILTFVAAAGLFLLAGAEFLALILIVVY 63 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCAS-NF---- 112 VGAV + FLF++MMLDID R KR L +G +L AEL++ A+ N+ Sbjct: 64 VGAVAILFLFVVMMLDIDFG----RVKRDTLKYAPVGVIIGVVLLAELVIAATGNYYDPQ 119 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 M + + L +N+E +G VLYT+Y +++G IL ++M+GAIVL LRH+ +K Sbjct: 120 MAVATSMPIPPLEVV-SNIEALGSVLYTRYILFFQLAGLILFVAMVGAIVLTLRHKEGLK 178 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQ I +Q+ P ++ + KV+SGKGI Sbjct: 179 RQSIPQQVGRTPATAVEIRKVESGKGI 205 >gi|300023444|ref|YP_003756055.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hyphomicrobium denitrificans ATCC 51888] gi|299525265|gb|ADJ23734.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hyphomicrobium denitrificans ATCC 51888] Length = 216 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 134/202 (66%), Gaps = 6/202 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ FFYLF+ +A+ S +V+ RNP+++V L+ AF NAAGLFLLLGAEF+AM+ ++VYV Sbjct: 3 EAGFFYLFAVLAVASGAMVILARNPVHAVLFLVLAFFNAAGLFLLLGAEFLAMLLVIVYV 62 Query: 64 GAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS--NFMVFSAEGE 120 GAV V FLF++MMLD+D E+ K +G+ G++ AEL+ S F + Sbjct: 63 GAVSVIFLFVVMMLDVDFAELKAGFIKNAKIGAIVGGVVLAELVALFSFRGFSIAPTVNV 122 Query: 121 LSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + G+ + N +G++LYT+Y Y + SG ILL++MIGAIVL L+HR ++KRQ I+ Sbjct: 123 AAPMPAAGSTLTNTAALGQILYTKYVYLFQASGMILLVAMIGAIVLTLKHRTNVKRQSIA 182 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ +VKV +G + Sbjct: 183 AQVSRDPAKTLEVVKVPTGGSV 204 >gi|304391411|ref|ZP_07373353.1| NADH-quinone oxidoreductase chain 10 [Ahrensia sp. R2A130] gi|303295640|gb|EFL89998.1| NADH-quinone oxidoreductase chain 10 [Ahrensia sp. R2A130] Length = 203 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/211 (45%), Positives = 137/211 (64%), Gaps = 20/211 (9%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +LFFYLF+ + + S+F+V+ RNP++SV LI F NAAGLF+L GAEF+A+I +V Sbjct: 1 MGVAALFFYLFATICVASAFMVIASRNPVHSVLFLILCFFNAAGLFMLTGAEFLALILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVF 115 VYVGAV V FLF++MMLD+D AE R GFL IG ILA ELI+ Sbjct: 61 VYVGAVAVLFLFVVMMLDVDF--AELRD--GFLQYMPIGAVIGIILAVELILVLGG---L 113 Query: 116 SAEGELSRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 S + E++ + +N++ IG +LYT+Y + ++ G ILL++MIGAIVL L HR Sbjct: 114 SFDPEIAARAVQPIPDLAEVSNIQAIGDLLYTKYIFFFQLCGLILLVAMIGAIVLTLSHR 173 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 D++RQ+I+ Q+ +P N + + VK G+GI Sbjct: 174 PDVRRQNIADQVARDP-NDVELRSVKPGEGI 203 >gi|90423914|ref|YP_532284.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisB18] gi|90105928|gb|ABD87965.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18] Length = 212 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 131/206 (63%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + LFFYL+S + + ++ +V+ RNP+++V LI FVNAAGLF+L+GAEF+AMI ++ Sbjct: 1 MTLPDLFFYLYSGVCVAAATMVIVSRNPVHAVLFLILVFVNAAGLFMLMGAEFLAMILII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL--IVCASNFMVFSAE 118 VYVGAV V FLF+IMMLDID + + + GF G+L + + Sbjct: 61 VYVGAVAVLFLFVIMMLDIDFK----QLREGFFEYLPFGLLIGVIFLAELLLLAGGWVIH 116 Query: 119 GELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 L++ + +N E +G VLYT+Y + +ISG ILL++MIGAIVL +RHR +KR Sbjct: 117 PTLTKAITAPIPDNISNTEALGMVLYTRYIHYFQISGLILLVAMIGAIVLTMRHRVSVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q+IS Q NP+ ++ + KV SG+G+ Sbjct: 177 QNISAQNARNPETAMDVRKVASGQGL 202 >gi|85717020|ref|ZP_01047982.1| NADH dehydrogenase subunit J [Nitrobacter sp. Nb-311A] gi|85696144|gb|EAQ34040.1| NADH dehydrogenase subunit J [Nitrobacter sp. Nb-311A] Length = 211 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/200 (45%), Positives = 136/200 (68%), Gaps = 11/200 (5%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFYLF+ + + S+ +V++ RNP++SV LI AFVNAAGLF+LLGAEF+AMI +VVYVGAV Sbjct: 6 FFYLFAGVCVASAVMVISSRNPVHSVLFLILAFVNAAGLFILLGAEFLAMILIVVYVGAV 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAEGELSRL 124 V FLF+IMMLD+D AE R+ GFL G++ A + + +V ++ +++ Sbjct: 66 AVLFLFVIMMLDVDF--AELRE--GFLEYLPFGLVIAAIFLLELLLVVGGWTLNPTVTKS 121 Query: 125 VFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +N E +G VLYT+Y + +++G +LL++MIGAIVL LRHR +KRQDI+ Q Sbjct: 122 ITAAIPGDVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHRVSVKRQDINVQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 P+ ++ + +V SG+G+ Sbjct: 182 NARTPEMAMSVRQVASGQGL 201 >gi|58696815|ref|ZP_00372343.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225630632|ref|YP_002727423.1| NADH dehydrogenase I, J subunit [Wolbachia sp. wRi] gi|58536985|gb|EAL60140.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225592613|gb|ACN95632.1| NADH dehydrogenase I, J subunit [Wolbachia sp. wRi] Length = 195 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/195 (44%), Positives = 135/195 (69%), Gaps = 8/195 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFY FS ++I+S+ V++VRNP+++V LIF FVN+A LF+LLGAEF+AM+ L+VY+GAV Sbjct: 4 FFYFFSILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVLIVYIGAV 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV- 125 V FLF++MMLDID R ++GF F +G + + +F++ S+ +S ++ Sbjct: 64 AVLFLFVVMMLDID----YIRLRQGFAKHFTLGAILCVVFFLVISFVIRSSTLNISNVIN 119 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLESNP 184 + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ IKRQ++ KQL + Sbjct: 120 YNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGIKRQNVLKQLTQS- 178 Query: 185 DNSIVMVKVKSGKGI 199 +S+ +VK K GKG+ Sbjct: 179 -SSVKLVKAKFGKGV 192 >gi|182679343|ref|YP_001833489.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beijerinckia indica subsp. indica ATCC 9039] gi|182635226|gb|ACB96000.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beijerinckia indica subsp. indica ATCC 9039] Length = 202 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 134/206 (65%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+ FF LFS + I+S+ +V+ RNP++SV LI AF NAAGLF++LGAEF+AMI +V Sbjct: 1 MDVQAFFFTLFSTVMIVSAIMVIAARNPVHSVLFLILAFCNAAGLFVMLGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---A 117 VYVGA+ V FLF++MMLD+D K+GFL +G L +++ ++ S Sbjct: 61 VYVGAIAVLFLFVVMMLDVDFT----EFKQGFLQYLPVGALIGAVVLVELFLVLGSWVAG 116 Query: 118 EGELSRL---VFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 G ++ + V G +N +G+VLYTQY Y + + +LL +MIGAIVL LRH+ +KR Sbjct: 117 SGSVTAIATPVPPGMSNTMALGRVLYTQYLYLFQAAAMVLLTAMIGAIVLTLRHKVGVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDI+ Q P ++I + KV SG+G+ Sbjct: 177 QDIAAQNARTPVDAIEIRKVASGQGL 202 >gi|319405689|emb|CBI79312.1| NADH dehydrogenase I chain J [Bartonella sp. AR 15-3] Length = 206 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 93/198 (46%), Positives = 129/198 (65%), Gaps = 5/198 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFY+F+F+ +IS+ +VVT RNP++SV LI F NAA LFLL GAEF+ +I LVVYVGAV Sbjct: 9 FFYIFAFIMLISAVIVVTARNPVHSVLFLILVFFNAAVLFLLAGAEFLGLILLVVYVGAV 68 Query: 67 IVFFLFIIMMLDIDI-EVAEPRKKRGFLGSF--FIGILAAELIVCASNFMVFSAEGELSR 123 V FLF++MMLD+D E+ K +GSF I + + ++ F + S Sbjct: 69 AVLFLFVVMMLDVDFAELKSGALKYAPIGSFIGIIIAIELIFVFISNGFSLVSGVHITQP 128 Query: 124 L--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + + + N + +G +LYT Y + +ISG ILL++MIGAIVL LRHR IKRQ I+ Q+ Sbjct: 129 MPDLAQRTNTQALGDILYTDYVFYFQISGIILLVAMIGAIVLTLRHRSGIKRQSIAAQVA 188 Query: 182 SNPDNSIVMVKVKSGKGI 199 +N+I + KV+SGKGI Sbjct: 189 RTAENAIEIKKVESGKGI 206 >gi|149914593|ref|ZP_01903123.1| NADH dehydrogenase subunit J [Roseobacter sp. AzwK-3b] gi|149811386|gb|EDM71221.1| NADH dehydrogenase subunit J [Roseobacter sp. AzwK-3b] Length = 202 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 89/203 (43%), Positives = 126/203 (62%), Gaps = 5/203 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M + FYLF+ A+ V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++ Sbjct: 1 MSMTVMSFYLFAISALAGGLFTVISRNPVHSVLWLILAFISSAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D + R + IG IL + + N+ + S Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAALKAEMARYMPLALLIGVILLMQFGLAFGNWQM-SEGA 119 Query: 120 ELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 E +R + VEN +G +LY +Y + SG ILL++MIGAIVL LRHR DIKRQD+ Sbjct: 120 EAARAAVTPDGVENTAALGMLLYDKYFLLFQTSGLILLVAMIGAIVLTLRHRSDIKRQDV 179 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 180 LAQMYRDPAKAMELKDVKPGQGL 202 >gi|328543696|ref|YP_004303805.1| NADH dehydrogenase I chain J transmembrane protein [polymorphum gilvum SL003B-26A1] gi|326413440|gb|ADZ70503.1| Probable NADH dehydrogenase I chain J transmembrane protein [Polymorphum gilvum SL003B-26A1] Length = 204 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/210 (45%), Positives = 144/210 (68%), Gaps = 17/210 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++++LFFYLF+ + + S+F+V+ RNP++SV LI AFVN+AGLF+LLGAE++AM+ +V Sbjct: 1 MILKALFFYLFAGVTVASAFMVIASRNPVHSVLFLILAFVNSAGLFVLLGAEYLAMLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D +E+ ++GFL +G L +I+ +V A Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVEL-----RQGFLQYLPVGALVG-VILMVELLLVVGAWA 114 Query: 120 ELSRLVFKG----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 ++ G +NVE IG+VLYT+Y + +++G +LL++M+GAIVL LRH+ Sbjct: 115 IAPEVIAHGSQPIPPLDQMSNVEAIGQVLYTKYVFFFQVAGLVLLVAMVGAIVLTLRHKE 174 Query: 170 DIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 +KRQDI Q+ N ++I + KV+SGKGI Sbjct: 175 GVKRQDIPTQVARNKKSAIEIRKVESGKGI 204 >gi|91204900|ref|YP_537255.1| NADH dehydrogenase subunit J [Rickettsia bellii RML369-C] gi|157827775|ref|YP_001496839.1| NADH dehydrogenase subunit J [Rickettsia bellii OSU 85-389] gi|122426098|sp|Q1RKE8|NUOJ_RICBR RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|91068444|gb|ABE04166.1| NADH dehydrogenase I chain J [Rickettsia bellii RML369-C] gi|157803079|gb|ABV79802.1| NADH dehydrogenase subunit J [Rickettsia bellii OSU 85-389] Length = 205 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/198 (45%), Positives = 131/198 (66%), Gaps = 5/198 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + IISS VV +N +YSV LIFAF+N +GL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFAFINGSGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121 V V FLF+IMMLD+ A + K + S F+ I+ A+L+V + + FS++ Sbjct: 63 VAVLFLFVIMMLDMHFNKAIMQLKEKPILSIFVSLIMFADLVVIILLGTKNIHFSSDLSF 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + + +N + IGK+LYT + P +I+G IL ++MIG I L LR R +KRQ+I+KQL Sbjct: 123 A-IASDVSNTKAIGKILYTDFMIPFQIAGLILFVAMIGCITLTLRKRDGVKRQNIAKQLS 181 Query: 182 SNPDNSIVMVKVKSGKGI 199 N +N+++M K KGI Sbjct: 182 HNKENAVLMTKPLINKGI 199 >gi|291613547|ref|YP_003523704.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sideroxydans lithotrophicus ES-1] gi|291583659|gb|ADE11317.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sideroxydans lithotrophicus ES-1] Length = 215 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 133/200 (66%), Gaps = 8/200 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++++ FY F+ + ++++ V+T RNP+++V L+ AFV++AG++LLL AEF+A++ ++ Sbjct: 1 MNLETVLFYFFAIVTVLAALRVITARNPLHAVLFLVLAFVSSAGIWLLLEAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+IE R + GF +G+L A LI +++ + E Sbjct: 61 VYVGAVMVLFLFVVMMLDINIE----RLREGFWRWLPVGLLLAALIGVQMVWVLGAKETS 116 Query: 121 LSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 V K +N + +G+++YT Y YP E++ +LL++M+ AI L LR RRD KRQDI Sbjct: 117 AGMRVVKHAADYSNTKELGRLVYTDYVYPFELAAILLLVAMVAAIALTLRRRRDAKRQDI 176 Query: 177 SKQLESNPDNSIVMVKVKSG 196 ++Q++ + + +V V S Sbjct: 177 NQQVKVKKQDRLRIVSVPSA 196 >gi|310816704|ref|YP_003964668.1| NADH dehydrogenase subunit J [Ketogulonicigenium vulgare Y25] gi|308755439|gb|ADO43368.1| NADH dehydrogenase subunit J [Ketogulonicigenium vulgare Y25] Length = 204 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 129/198 (65%), Gaps = 9/198 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ +I + VT RNP+++V LI AF++AAGLF+L GAEFVAMI ++VYVGAV Sbjct: 5 FYVFAAGTLIGGLMTVTARNPVHAVLWLISAFLSAAGLFVLQGAEFVAMILMIVYVGAVA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGF--LGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V FLF++MMLD+D A K R F +G +LAA+L++ ++ +A G +RL Sbjct: 65 VLFLFVVMMLDVDFA-ALRAKSRAFVPVGVVIGAVLAAQLVMVFGDWS--AAPGASARLA 121 Query: 126 FKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 +N + +LY +Y +++G +LL++MIGAIVL +RHR+D+KRQ++ +Q+ Sbjct: 122 TPTPAGVDNTHALALILYDRYFIAFQLAGLVLLVAMIGAIVLTMRHRQDVKRQNVLEQMS 181 Query: 182 SNPDNSIVMVKVKSGKGI 199 +P +I M SG+G+ Sbjct: 182 RDPAKAIRMANPGSGQGL 199 >gi|42520778|ref|NP_966693.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410518|gb|AAS14627.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 195 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/195 (43%), Positives = 135/195 (69%), Gaps = 8/195 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFY F+ ++I+S+ V++VRNP+++V LIF FVN+A LF+LLGAEF+AM+ L+VY+GAV Sbjct: 4 FFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVLIVYIGAV 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV- 125 V FLF++MMLDID R ++GF F +G + + +F++ S+ +S ++ Sbjct: 64 AVLFLFVVMMLDID----YIRLRQGFAKHFTLGAILCGVFFLIISFVIRSSTLNISNVIN 119 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLESNP 184 + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ +K+Q++ KQL + Sbjct: 120 YNANNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQLTQS- 178 Query: 185 DNSIVMVKVKSGKGI 199 +S+ +VK K GKG+ Sbjct: 179 -SSVKLVKAKFGKGV 192 >gi|110680453|ref|YP_683460.1| NADH dehydrogenase subunit J [Roseobacter denitrificans OCh 114] gi|109456569|gb|ABG32774.1| NADH-quinone oxidoreductase chain J [Roseobacter denitrificans OCh 114] Length = 200 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 124/198 (62%), Gaps = 9/198 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ I V RNP++SV LI AF++AAGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISVIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVLLGAEFVAMLLIIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVFSAEGELS 122 V FLF++MMLD+D + + + IG++ A SN +AEG + Sbjct: 66 VLFLFVVMMLDVDFAELKAEMSKYLPLALLIGVVLLMQFAIAFGAWESN---AAAEGMRA 122 Query: 123 RLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 ++ +N E +G +LY QY ++SG ILL++MIGAIVL LRHR D+KRQD+ Q+ Sbjct: 123 QVTPVDRHNTEALGMILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRSDVKRQDVVAQMM 182 Query: 182 SNPDNSIVMVKVKSGKGI 199 +P ++ + VKSG+G+ Sbjct: 183 RDPAKAMELKDVKSGQGL 200 >gi|294677070|ref|YP_003577685.1| NADH-quinone oxidoreductase subunit J [Rhodobacter capsulatus SB 1003] gi|1709410|sp|P50975|NUOJ_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|3282575|gb|AAC25001.1| NUOJ [Rhodobacter capsulatus] gi|294475890|gb|ADE85278.1| NADH-quinone oxidoreductase, J subunit [Rhodobacter capsulatus SB 1003] gi|1586524|prf||2204231E NADH ubiquinone oxidoreductase Length = 202 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 130/198 (65%), Gaps = 9/198 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ +A+++ +VV +NP+++V LI F++AAGLF+L+GAEFVAM+ ++VYVGAV Sbjct: 8 FYLFAVVAVVAGLMVVLSKNPVHAVLWLILTFLSAAGLFVLMGAEFVAMLLIIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR-GFLGSFFIGILAAELIVCASNFMVF----SAEGELS 122 V FLF++MMLDID + R +G ++ A+L A+ MV+ +A G + Sbjct: 68 VLFLFVVMMLDIDFAALRGQLVRYAPVGGLIALVMLAQL---ATGLMVWNTADAANGLRA 124 Query: 123 RLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 +G N +G +LY +Y Y + +G +LL++MIGAI+L LRHR DIKRQ++ Q+ Sbjct: 125 APAPEGVENTAALGMILYDRYLYLFQGAGLVLLVAMIGAILLTLRHRTDIKRQNVLAQMH 184 Query: 182 SNPDNSIVMVKVKSGKGI 199 +P ++ MV VK G+G+ Sbjct: 185 RDPAKALEMVDVKPGQGL 202 >gi|114569914|ref|YP_756594.1| NADH dehydrogenase (quinone) [Maricaulis maris MCS10] gi|114340376|gb|ABI65656.1| NADH dehydrogenase subunit J [Maricaulis maris MCS10] Length = 203 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 127/204 (62%), Gaps = 11/204 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + +L F+ FS +AI+S+ +VV RNP+ SV LI AF +AAGLF+LLGAEF+AM+ +VVY Sbjct: 2 LANLAFWAFSGVAILSALMVVIARNPVRSVLFLILAFFSAAGLFVLLGAEFLAMLLIVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVFSA 117 VGAV V FLF++MMLD+D K+GFL +G ILA EL + + Sbjct: 62 VGAVAVLFLFVVMMLDVDFT----ELKQGFLSYLPLGGLVAIILAVELGMIGMTWQASEQ 117 Query: 118 EGELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 L NVE +G V+Y QY Y + +G +LL++MIGAIVL LRH+ ++RQ Sbjct: 118 AMALRDAAIPDGLTNVEALGLVIYDQYVYFFQAAGLVLLVAMIGAIVLTLRHKPGVRRQS 177 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 +S Q+ + +++ M +K G+GI Sbjct: 178 VSAQVARDRKDAVTMHDIKPGQGI 201 >gi|103486786|ref|YP_616347.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingopyxis alaskensis RB2256] gi|98976863|gb|ABF53014.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingopyxis alaskensis RB2256] Length = 203 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/207 (44%), Positives = 134/207 (64%), Gaps = 17/207 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + FYLF+ + I S+ +V+ RNP++SV LI AF NAAGL LL GAEF+AM+ ++VY Sbjct: 2 IQLIAFYLFATIVIASAAMVIFARNPVHSVMWLILAFFNAAGLMLLAGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA 117 VGAV V FLF++MMLDID AE R GF LG+ ILAAELI +SA Sbjct: 62 VGAVAVLFLFVVMMLDIDF--AELRA--GFVRYLPLGALVAIILAAELIFAVG---AWSA 114 Query: 118 EG-----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 G + +V +N++ IG++LYT+Y + E +G +LL++MIGAIVL R R ++ Sbjct: 115 GGVDLAARTAPVVSDKSNIQQIGELLYTKYIFLFEAAGIVLLVAMIGAIVLTHRQRGGVR 174 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 Q+IS+Q+ P+++ +V +G+G+ Sbjct: 175 AQNISQQVRRRPEDATRLVDPGTGQGV 201 >gi|163732048|ref|ZP_02139494.1| NADH dehydrogenase subunit J [Roseobacter litoralis Och 149] gi|161394346|gb|EDQ18669.1| NADH dehydrogenase subunit J [Roseobacter litoralis Och 149] Length = 200 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 124/198 (62%), Gaps = 9/198 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ I V RNP++SV LI AF++AAGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISVIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVLLGAEFVAMLLIIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVFSAEGELS 122 V FLF++MMLD+D + + + IG++ A SN +AEG + Sbjct: 66 VLFLFVVMMLDVDFAELKAEMSKYLPLALLIGVVLLMQFAIAFGAWESN---AAAEGMRA 122 Query: 123 RLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 ++ +N E +G +LY QY ++SG ILL++MIGAIVL LRHR D+KRQD+ Q+ Sbjct: 123 QVTPVDRHNTEALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRSDVKRQDVVAQMM 182 Query: 182 SNPDNSIVMVKVKSGKGI 199 +P ++ + VKSG+G+ Sbjct: 183 RDPAKAMELKDVKSGQGL 200 >gi|260434166|ref|ZP_05788137.1| NADH-quinone oxidoreductase subunit j [Silicibacter lacuscaerulensis ITI-1157] gi|260417994|gb|EEX11253.1| NADH-quinone oxidoreductase subunit j [Silicibacter lacuscaerulensis ITI-1157] Length = 200 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/200 (43%), Positives = 123/200 (61%), Gaps = 13/200 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISAITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----SAEGELSR 123 V FLF++MMLD+D + R + IG L++ M F SA+G + Sbjct: 66 VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAFGAWESAQGAAAN 120 Query: 124 LV----FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L +N E +G +LY QY +++G ILL++MIGAIVL LRHR+D+KRQD+ Q Sbjct: 121 LAQPIPADRHNTEALGLILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRKDVKRQDVIAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPAQALELKDVKPGQGL 200 >gi|296116525|ref|ZP_06835135.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter hansenii ATCC 23769] gi|295976737|gb|EFG83505.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter hansenii ATCC 23769] Length = 257 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/201 (43%), Positives = 129/201 (64%), Gaps = 4/201 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+F+ + ++S+ +VV+ RNP++SV LI AF NAAGLFL+ GAEF+AMI ++VY Sbjct: 2 MTQIVFYIFAAVLVLSASMVVSARNPVHSVLFLILAFFNAAGLFLIAGAEFLAMILVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLDI I A E ++ G+ +L EL++ ++ V S G++ Sbjct: 62 VGAVAVLFLFVVMMLDIRIAQAREGLQRYAPFGAAIGAVLLGELVLAFMHWRVASNIGDV 121 Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + LV +N IG VLYT Y + + +LL++MIGAIVL LR R +RQDI + Sbjct: 122 AHLVPSTPTRSNTAAIGDVLYTHYIFLFQACALVLLVAMIGAIVLTLRDRPTGRRQDIER 181 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q E +P S+ M+ + G+ + Sbjct: 182 QHERDPAESMEMLSLPLGRSV 202 >gi|254476174|ref|ZP_05089560.1| NADH dehydrogenase i, j subunit [Ruegeria sp. R11] gi|214030417|gb|EEB71252.1| NADH dehydrogenase i, j subunit [Ruegeria sp. R11] Length = 200 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 122/200 (61%), Gaps = 13/200 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----SAEGELSR 123 V FLF++MMLD+D + R + IG L++ M F SA S+ Sbjct: 66 VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAFGAWESAPAAGSQ 120 Query: 124 LV----FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L +N E +G +LY QY ++SG ILL++MIGAIVL LRHR+D+KRQD+ Q Sbjct: 121 LAQPIPADKHNTEALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200 >gi|126729569|ref|ZP_01745382.1| NADH dehydrogenase subunit J [Sagittula stellata E-37] gi|126709688|gb|EBA08741.1| NADH dehydrogenase subunit J [Sagittula stellata E-37] Length = 200 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 127/202 (62%), Gaps = 7/202 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FYLF+ I V RNP++SV LI AF+++AGLF+L+GAEFVAM+ ++VY Sbjct: 1 MMAFAFYLFALGVIAGGLFTVVSRNPVHSVLWLILAFLSSAGLFVLMGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE---- 118 VGAV V FLF++MMLD+D + R + IG++ L+ A F V+ A Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVI--LMQLAMAFGVWEASDLAA 118 Query: 119 GELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 G+LS +G N +G +LY +Y ++SG ILL++MIGAIVL LRHR+D+KRQD+ Sbjct: 119 GQLSAPAPEGIENTAALGMILYDKYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVL 178 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + V+ G+G+ Sbjct: 179 AQMYRDPAKAMELRDVRPGQGL 200 >gi|56697605|ref|YP_167974.1| NADH dehydrogenase subunit J [Ruegeria pomeroyi DSS-3] gi|56679342|gb|AAV96008.1| NADH dehydrogenase I, J subunit [Ruegeria pomeroyi DSS-3] Length = 200 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 13/200 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----SAEGELSR 123 V FLF++MMLD+D + R + IG L++ M + +AEG Sbjct: 66 VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAYGAWETAEGAAGH 120 Query: 124 LV----FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L +N E +G ++Y QY +++G ILL++MIGAIVL LRHR+D+KRQDI Q Sbjct: 121 LAQPMPADRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDIVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200 >gi|163738811|ref|ZP_02146225.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis BS107] gi|161388139|gb|EDQ12494.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis BS107] Length = 200 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 84/200 (42%), Positives = 124/200 (62%), Gaps = 13/200 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLIIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGE 120 V FLF++MMLD+D + R + IG L++ M F +A + Sbjct: 66 VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAFGAWETAPAAATQ 120 Query: 121 LSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L++ + +N E +G ++Y QY ++SG ILL++MIGAIVL LRHR+D+KRQD+ Q Sbjct: 121 LAQPIPADQHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPATAMELKDVKPGQGL 200 >gi|254509596|ref|ZP_05121663.1| NADH dehydrogenase i, j subunit [Rhodobacteraceae bacterium KLH11] gi|221533307|gb|EEE36295.1| NADH dehydrogenase i, j subunit [Rhodobacteraceae bacterium KLH11] Length = 200 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 123/200 (61%), Gaps = 13/200 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ AI V R P++SV LI +F+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISAITGGLFTVISRQPVHSVLWLILSFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----SAEGELSR 123 V FLF++MMLD+D + R + IG L++ M F SA+G + Sbjct: 66 VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAFGAWDSAQGAAAN 120 Query: 124 LV----FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L +N E +G +LY QY +++G ILL++MIGAIVL LRHR+DIKRQDI Q Sbjct: 121 LAQPVPTDRHNTEALGVILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDIKRQDIIGQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200 >gi|163741478|ref|ZP_02148869.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis 2.10] gi|161385212|gb|EDQ09590.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis 2.10] Length = 200 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 124/195 (63%), Gaps = 3/195 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLV 125 V FLF++MMLD+D + R + IG IL ++ + +A +L++ + Sbjct: 66 VLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAYGAWETAPAAATQLAQPI 125 Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 +N E +G ++Y QY ++SG ILL++MIGAIVL LRHR+D+KRQD+ Q+ +P Sbjct: 126 PTDQHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQMMRDP 185 Query: 185 DNSIVMVKVKSGKGI 199 ++ + VK G+G+ Sbjct: 186 ATAMELKDVKPGQGL 200 >gi|306843748|ref|ZP_07476347.1| NADH dehydrogenase subunit J [Brucella sp. BO1] gi|306275939|gb|EFM57652.1| NADH dehydrogenase subunit J [Brucella sp. BO1] Length = 205 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/192 (47%), Positives = 122/192 (63%), Gaps = 12/192 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M Sbjct: 18 IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 77 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127 MLD+D KRG L +G IL ELI V AS F +G L V Sbjct: 78 MLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVAT 133 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187 N +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ IS Q+ P+ + Sbjct: 134 RTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSISAQVARTPETA 193 Query: 188 IVMVKVKSGKGI 199 I + KV++GKGI Sbjct: 194 IEIRKVETGKGI 205 >gi|190571385|ref|YP_001975743.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357657|emb|CAQ55101.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 195 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 134/195 (68%), Gaps = 8/195 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFY F+ ++I+S+ V++VRNP+++V LIF FVN+A LF+LLGAEF+AM+ ++VY+GAV Sbjct: 4 FFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVMIVYIGAV 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV- 125 V FLF++MMLDID R ++GF +G + + +F++ S+ +S ++ Sbjct: 64 AVLFLFVVMMLDID----YIRLRQGFAKHCTLGAMLCVVFFLVISFVIRSSAPNISNVIN 119 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLESNP 184 + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ +K+Q++ KQL + Sbjct: 120 YNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQLTQS- 178 Query: 185 DNSIVMVKVKSGKGI 199 +S+ +VK K GKG+ Sbjct: 179 -SSVKLVKAKFGKGV 192 >gi|157804159|ref|YP_001492708.1| NADH dehydrogenase subunit J [Rickettsia canadensis str. McKiel] gi|157785422|gb|ABV73923.1| NADH dehydrogenase subunit J [Rickettsia canadensis str. McKiel] Length = 205 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 126/201 (62%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISSF VV +N +YSV LIFAF+N + L +LLGAEF+AMI +V+YVGA Sbjct: 3 IFFYLFATLITISSFCVVLNKNSVYSVLWLIFAFLNGSSLMILLGAEFLAMILIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121 V V FLF+IMMLD+ A + K S I I+ A+L++ + + FS++ Sbjct: 63 VAVLFLFVIMMLDMHFNKAITQLKENLTLSILISLIMFADLVIIILLGTKNINFSSD--- 119 Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 L NN+ N IG +LYT + P +++G IL ++MI IVL LR R IKRQDI K Sbjct: 120 -ILFATTNNISNTKAIGNILYTDFMIPFQMAGLILFVAMISCIVLTLRKREGIKRQDILK 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N +N+++M K KGI Sbjct: 179 QLSHNKENAVLMTKPLLNKGI 199 >gi|89070161|ref|ZP_01157490.1| NADH dehydrogenase I, J subunit [Oceanicola granulosus HTCC2516] gi|89044278|gb|EAR50424.1| NADH dehydrogenase I, J subunit [Oceanicola granulosus HTCC2516] Length = 196 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 123/195 (63%), Gaps = 3/195 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ I V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 2 FYVFAVTTIAGGLFTVVSRNPVHSVLWLILAFLSSAGLFILLGAEFVAMLLVIVYVGAVA 61 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLV 125 V FLF++MMLD+D + R + IGI+ + A F A + L+ V Sbjct: 62 VLFLFVVMMLDVDFAALKAEMARYMPLALLIGIVILMQLALAFGVWTFGAGVDERLAAPV 121 Query: 126 FKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 G +N E +G +LY +Y +++G ILL++MIGAIVL LRHR D+KRQ++ +Q+ +P Sbjct: 122 VGGVHNTEGLGFLLYDRYILLFQLAGLILLVAMIGAIVLTLRHREDVKRQNVLEQMYRDP 181 Query: 185 DNSIVMVKVKSGKGI 199 ++ + VK G+G+ Sbjct: 182 ATAMELRDVKPGQGL 196 >gi|15604622|ref|NP_221140.1| NADH dehydrogenase subunit J [Rickettsia prowazekii str. Madrid E] gi|20139313|sp|Q9ZCG3|NUOJ_RICPR RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|3861317|emb|CAA15216.1| NADH DEHYDROGENASE I CHAIN J (nuoJ) [Rickettsia prowazekii] gi|292572439|gb|ADE30354.1| NADH dehydrogenase I chain J [Rickettsia prowazekii Rp22] Length = 205 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 125/201 (62%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + IISS VV +N +YSV LIF F+N +GL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFTFINGSGLMILLGAEFLAMLLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAE--GELS 122 V V FLF+IMMLDI+ A + + S FI I+ A+L++ ++ S + S Sbjct: 63 VAVLFLFVIMMLDINFNQAITKLRENLSLSIFITLIMFADLVIT----IILSTKNINYSS 118 Query: 123 RLVFK-GNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + F NN+ N IG VLYT++ P +I+G IL ++MI I L L+ R IK QDI K Sbjct: 119 NISFAIANNISNTKAIGNVLYTEFMLPFQIAGLILFVAMISCITLTLKKRDRIKHQDIRK 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N N I+M K KG+ Sbjct: 179 QLSHNKSNVILMTKPILNKGV 199 >gi|225631322|ref|ZP_03787996.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590973|gb|EEH12181.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 195 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 134/195 (68%), Gaps = 8/195 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFY F+ ++I+S+ V++VRNP+++V LIF FVN+A LF+LLGAEF+AM+ ++VY+GAV Sbjct: 4 FFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVMIVYIGAV 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV- 125 V FLF++MMLDID R ++GF +G + + +F++ S+ +S ++ Sbjct: 64 AVLFLFVVMMLDID----YIRLRQGFAKHCTLGAMLCVVFFLVISFVIRSSAPNISNVIN 119 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLESNP 184 + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ +K+Q++ KQL + Sbjct: 120 YNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQLTQS- 178 Query: 185 DNSIVMVKVKSGKGI 199 +S+ ++K K GKG+ Sbjct: 179 -SSVKLIKAKFGKGV 192 >gi|86137585|ref|ZP_01056162.1| NADH dehydrogenase I, J subunit [Roseobacter sp. MED193] gi|85825920|gb|EAQ46118.1| NADH dehydrogenase I, J subunit [Roseobacter sp. MED193] Length = 200 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 123/195 (63%), Gaps = 3/195 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLV 125 V FLF++MMLD+D + + + IG IL ++ S A +L++ + Sbjct: 66 VLFLFVVMMLDVDFAALKAEMAQYMPLALLIGLVILMQFVMAYGSWESAHGAAAQLAQPI 125 Query: 126 FKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 + +N E +G ++Y QY ++SG ILL++MIGAI L LRHR+D+KRQD+ Q+ +P Sbjct: 126 PEDRHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAITLTLRHRKDVKRQDVMLQMSRDP 185 Query: 185 DNSIVMVKVKSGKGI 199 ++ + +K G+G+ Sbjct: 186 AKAMELKDIKPGQGL 200 >gi|288958980|ref|YP_003449321.1| NADH dehydrogenase I chain J [Azospirillum sp. B510] gi|288911288|dbj|BAI72777.1| NADH dehydrogenase I chain J [Azospirillum sp. B510] Length = 204 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 132/204 (64%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++Q + FY+F+ + + S +V++ RNP++SV LI AF AAGL +L+GAEF+AMI ++ Sbjct: 1 MIVQGIAFYVFAALLVASGVMVISARNPVHSVLYLILAFFQAAGLCVLMGAEFIAMILVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VF 115 VYVGAV V FLF++MMLDI+ E+ + + LG+ IL AEL ++ V Sbjct: 61 VYVGAVAVLFLFVVMMLDINFRELRQGAMEALPLGALVGLILLAELAAVLGGWIVAPNVA 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + G + + + N +G+++YTQY Y + SG ILL++MIGAIVL LRHR +++Q+ Sbjct: 121 ATIGAPTPALDQVTNTHALGRLIYTQYVYLFQASGIILLIAMIGAIVLTLRHRAGVRKQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q+ ++ + + KV +G+G+ Sbjct: 181 VGVQIARRREDVVAIRKVTTGEGV 204 >gi|260574772|ref|ZP_05842775.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodobacter sp. SW2] gi|259023189|gb|EEW26482.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodobacter sp. SW2] Length = 204 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/199 (42%), Positives = 128/199 (64%), Gaps = 9/199 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+F+ + S+ LV RNP++SV LI AF++ AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 8 FYLFAFVTLTSALLVTVSRNPVHSVLWLILAFISTAGLFVLLGAEFVAMLLMIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS---R 123 V FLF++MMLDID + R +G F +L E + F+ A+G ++ Sbjct: 68 VLFLFVVMMLDIDFAALRGKMTRYLPIGLAFGVVLLLEF--SMALFVWVQADGAVAMRQA 125 Query: 124 LVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + VEN +G ++Y +Y Y + +G ILL++MIGAI+L LRHR+DIKRQ++ Q+ Sbjct: 126 VAPDPGQVENTRALGLLIYDKYIYLFQAAGLILLVAMIGAILLTLRHRKDIKRQNVLHQM 185 Query: 181 ESNPDNSIVMVKVKSGKGI 199 +P ++ + +K G+G+ Sbjct: 186 WRDPAKTMEIKDIKPGQGL 204 >gi|99080597|ref|YP_612751.1| NADH dehydrogenase subunit J [Ruegeria sp. TM1040] gi|99036877|gb|ABF63489.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040] Length = 200 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 122/195 (62%), Gaps = 3/195 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISAITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLV 125 V FLF++MMLD+D + R + IG IL +I S S LS+ + Sbjct: 66 VLFLFVVMMLDVDFAELKAEMARYTPLALLIGLVILMQFVIAYGSWESAHSVAENLSQPI 125 Query: 126 FKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 +N E +G +LY QY +++G ILL++MIGAIVL LRHR+D+KRQD+ Q+ +P Sbjct: 126 PTDRHNTEALGLILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDVLAQMYRDP 185 Query: 185 DNSIVMVKVKSGKGI 199 ++ + +K G+G+ Sbjct: 186 AKAMELKDIKPGQGL 200 >gi|17987432|ref|NP_540066.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 1 str. 16M] gi|17983124|gb|AAL52330.1| NADH-quinone oxidoreductase chain j [Brucella melitensis bv. 1 str. 16M] Length = 189 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/192 (47%), Positives = 121/192 (63%), Gaps = 12/192 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M Sbjct: 2 IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 61 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127 MLD+D KRG L +G IL ELI V AS F +G L V Sbjct: 62 MLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVAT 117 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187 N +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ I Q+ P+ + Sbjct: 118 RTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETA 177 Query: 188 IVMVKVKSGKGI 199 I + KV++GKGI Sbjct: 178 IEIRKVETGKGI 189 >gi|23501698|ref|NP_697825.1| NADH dehydrogenase subunit J [Brucella suis 1330] gi|62289760|ref|YP_221553.1| NADH dehydrogenase subunit J [Brucella abortus bv. 1 str. 9-941] gi|82699688|ref|YP_414262.1| NADH dehydrogenase subunit J [Brucella melitensis biovar Abortus 2308] gi|148559090|ref|YP_001258789.1| NADH dehydrogenase subunit J [Brucella ovis ATCC 25840] gi|161618775|ref|YP_001592662.1| NADH dehydrogenase subunit J [Brucella canis ATCC 23365] gi|163843084|ref|YP_001627488.1| NADH dehydrogenase subunit J [Brucella suis ATCC 23445] gi|189024005|ref|YP_001934773.1| NADH dehydrogenase subunit J [Brucella abortus S19] gi|225852327|ref|YP_002732560.1| NADH dehydrogenase subunit J [Brucella melitensis ATCC 23457] gi|254689067|ref|ZP_05152321.1| NADH dehydrogenase subunit J [Brucella abortus bv. 6 str. 870] gi|254693549|ref|ZP_05155377.1| NADH dehydrogenase subunit J [Brucella abortus bv. 3 str. Tulya] gi|254697201|ref|ZP_05159029.1| NADH dehydrogenase subunit J [Brucella abortus bv. 2 str. 86/8/59] gi|254701579|ref|ZP_05163407.1| NADH dehydrogenase subunit J [Brucella suis bv. 5 str. 513] gi|254704126|ref|ZP_05165954.1| NADH dehydrogenase subunit J [Brucella suis bv. 3 str. 686] gi|254706974|ref|ZP_05168802.1| NADH dehydrogenase subunit J [Brucella pinnipedialis M163/99/10] gi|254709919|ref|ZP_05171730.1| NADH dehydrogenase subunit J [Brucella pinnipedialis B2/94] gi|254713920|ref|ZP_05175731.1| NADH dehydrogenase subunit J [Brucella ceti M644/93/1] gi|254717022|ref|ZP_05178833.1| NADH dehydrogenase subunit J [Brucella ceti M13/05/1] gi|254730097|ref|ZP_05188675.1| NADH dehydrogenase subunit J [Brucella abortus bv. 4 str. 292] gi|256031412|ref|ZP_05445026.1| NADH dehydrogenase subunit J [Brucella pinnipedialis M292/94/1] gi|256044490|ref|ZP_05447394.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 1 str. Rev.1] gi|256060923|ref|ZP_05451081.1| NADH dehydrogenase subunit J [Brucella neotomae 5K33] gi|256113346|ref|ZP_05454204.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 3 str. Ether] gi|256159533|ref|ZP_05457301.1| NADH dehydrogenase subunit J [Brucella ceti M490/95/1] gi|256254820|ref|ZP_05460356.1| NADH dehydrogenase subunit J [Brucella ceti B1/94] gi|256257316|ref|ZP_05462852.1| NADH dehydrogenase subunit J [Brucella abortus bv. 9 str. C68] gi|256264174|ref|ZP_05466706.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis bv. 2 str. 63/9] gi|256369243|ref|YP_003106751.1| NADH dehydrogenase subunit J [Brucella microti CCM 4915] gi|260168546|ref|ZP_05755357.1| NADH dehydrogenase subunit J [Brucella sp. F5/99] gi|260545490|ref|ZP_05821231.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella abortus NCTC 8038] gi|260563844|ref|ZP_05834330.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis bv. 1 str. 16M] gi|260566625|ref|ZP_05837095.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella suis bv. 4 str. 40] gi|260754565|ref|ZP_05866913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 6 str. 870] gi|260757786|ref|ZP_05870134.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 4 str. 292] gi|260761611|ref|ZP_05873954.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 2 str. 86/8/59] gi|260883592|ref|ZP_05895206.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 9 str. C68] gi|261213814|ref|ZP_05928095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 3 str. Tulya] gi|261218829|ref|ZP_05933110.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M13/05/1] gi|261222001|ref|ZP_05936282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti B1/94] gi|261314437|ref|ZP_05953634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis M163/99/10] gi|261317465|ref|ZP_05956662.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis B2/94] gi|261321672|ref|ZP_05960869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M644/93/1] gi|261324923|ref|ZP_05964120.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella neotomae 5K33] gi|261752132|ref|ZP_05995841.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis bv. 5 str. 513] gi|261754792|ref|ZP_05998501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis bv. 3 str. 686] gi|261758019|ref|ZP_06001728.1| NADH dehydrogenase subunit J [Brucella sp. F5/99] gi|265988501|ref|ZP_06101058.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis M292/94/1] gi|265990914|ref|ZP_06103471.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella melitensis bv. 1 str. Rev.1] gi|265994752|ref|ZP_06107309.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella melitensis bv. 3 str. Ether] gi|265997965|ref|ZP_06110522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M490/95/1] gi|294852168|ref|ZP_06792841.1| NADH dehydrogenase I subunit J [Brucella sp. NVSL 07-0026] gi|297248165|ref|ZP_06931883.1| NADH dehydrogenase I subunit J [Brucella abortus bv. 5 str. B3196] gi|23347621|gb|AAN29740.1| NADH dehydrogenase I, J subunit [Brucella suis 1330] gi|62195892|gb|AAX74192.1| NuoJ, NADH dehydrogenase I, J subunit [Brucella abortus bv. 1 str. 9-941] gi|82615789|emb|CAJ10787.1| Photosynthetic reaction centre protein:NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Brucella melitensis biovar Abortus 2308] gi|148370347|gb|ABQ60326.1| NADH dehydrogenase I, J subunit [Brucella ovis ATCC 25840] gi|161335586|gb|ABX61891.1| NADH-quinone oxidoreductase chain J [Brucella canis ATCC 23365] gi|163673807|gb|ABY37918.1| NADH-quinone oxidoreductase chain J [Brucella suis ATCC 23445] gi|189019577|gb|ACD72299.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Brucella abortus S19] gi|225640692|gb|ACO00606.1| NADH-quinone oxidoreductase subunit J [Brucella melitensis ATCC 23457] gi|255999403|gb|ACU47802.1| NADH dehydrogenase subunit J [Brucella microti CCM 4915] gi|260096897|gb|EEW80772.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella abortus NCTC 8038] gi|260153860|gb|EEW88952.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis bv. 1 str. 16M] gi|260156143|gb|EEW91223.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella suis bv. 4 str. 40] gi|260668104|gb|EEX55044.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 4 str. 292] gi|260672043|gb|EEX58864.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 2 str. 86/8/59] gi|260674673|gb|EEX61494.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 6 str. 870] gi|260873120|gb|EEX80189.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 9 str. C68] gi|260915421|gb|EEX82282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 3 str. Tulya] gi|260920585|gb|EEX87238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti B1/94] gi|260923918|gb|EEX90486.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M13/05/1] gi|261294362|gb|EEX97858.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M644/93/1] gi|261296688|gb|EEY00185.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis B2/94] gi|261300903|gb|EEY04400.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella neotomae 5K33] gi|261303463|gb|EEY06960.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis M163/99/10] gi|261738003|gb|EEY25999.1| NADH dehydrogenase subunit J [Brucella sp. F5/99] gi|261741885|gb|EEY29811.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis bv. 5 str. 513] gi|261744545|gb|EEY32471.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis bv. 3 str. 686] gi|262552433|gb|EEZ08423.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M490/95/1] gi|262765865|gb|EEZ11654.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella melitensis bv. 3 str. Ether] gi|263001698|gb|EEZ14273.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella melitensis bv. 1 str. Rev.1] gi|263094392|gb|EEZ18237.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis bv. 2 str. 63/9] gi|264660698|gb|EEZ30959.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis M292/94/1] gi|294820757|gb|EFG37756.1| NADH dehydrogenase I subunit J [Brucella sp. NVSL 07-0026] gi|297175334|gb|EFH34681.1| NADH dehydrogenase I subunit J [Brucella abortus bv. 5 str. B3196] gi|326408834|gb|ADZ65899.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Brucella melitensis M28] gi|326538550|gb|ADZ86765.1| NADH-quinone oxidoreductase subunit J [Brucella melitensis M5-90] Length = 205 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/192 (47%), Positives = 121/192 (63%), Gaps = 12/192 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M Sbjct: 18 IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 77 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127 MLD+D KRG L +G IL ELI V AS F +G L V Sbjct: 78 MLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVAT 133 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187 N +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ I Q+ P+ + Sbjct: 134 RTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETA 193 Query: 188 IVMVKVKSGKGI 199 I + KV++GKGI Sbjct: 194 IEIRKVETGKGI 205 >gi|225627308|ref|ZP_03785345.1| NADH-quinone oxidoreductase subunit J [Brucella ceti str. Cudo] gi|237815247|ref|ZP_04594245.1| NADH-quinone oxidoreductase subunit J [Brucella abortus str. 2308 A] gi|225617313|gb|EEH14358.1| NADH-quinone oxidoreductase subunit J [Brucella ceti str. Cudo] gi|237790084|gb|EEP64294.1| NADH-quinone oxidoreductase subunit J [Brucella abortus str. 2308 A] Length = 215 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/192 (47%), Positives = 121/192 (63%), Gaps = 12/192 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M Sbjct: 28 IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 87 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127 MLD+D KRG L +G IL ELI V AS F +G L V Sbjct: 88 MLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVAT 143 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187 N +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ I Q+ P+ + Sbjct: 144 RTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETA 203 Query: 188 IVMVKVKSGKGI 199 I + KV++GKGI Sbjct: 204 IEIRKVETGKGI 215 >gi|114707378|ref|ZP_01440275.1| NADH dehydrogenase subunit J [Fulvimarina pelagi HTCC2506] gi|114537259|gb|EAU40386.1| NADH dehydrogenase subunit J [Fulvimarina pelagi HTCC2506] Length = 205 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/187 (44%), Positives = 123/187 (65%), Gaps = 5/187 (2%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ +VV +NP++SV LI FV AAGLFLL GAEF+A+I +VVYVGAV + FLF++MML Sbjct: 19 SALMVVLAKNPVHSVLFLILTFVAAAGLFLLAGAEFLALILIVVYVGAVAILFLFVVMML 78 Query: 78 DIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFM---VFSAEGELSRLVFKG-NNVE 132 D+D+ + R + G+ +L AELI+ S + V +++ L G +N+E Sbjct: 79 DLDVGQLKSRAIQYAPFGAIIAVLLLAELIIAGSGTIADPVLASQTALPMAEAGGASNIE 138 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 +G VLYT+Y +++G IL ++MIGAIVL LRH+ ++RQ I Q+ NP SI + + Sbjct: 139 ALGNVLYTRYILFFQLAGLILFVAMIGAIVLTLRHKEKVRRQSIPDQVARNPSTSIEVKQ 198 Query: 193 VKSGKGI 199 V+SG+GI Sbjct: 199 VESGRGI 205 >gi|254294093|ref|YP_003060116.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hirschia baltica ATCC 49814] gi|254042624|gb|ACT59419.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hirschia baltica ATCC 49814] Length = 204 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/203 (44%), Positives = 127/203 (62%), Gaps = 12/203 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + FY+ S + +IS+ V+ RNP++SV LI +F AAGL +L+GAEF+AM+ +VVY Sbjct: 1 MQLIAFYILSTVVLISAISVIASRNPVHSVLWLILSFFTAAGLLVLIGAEFLAMLLIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVFSA 117 VGAV V FLF++MMLD+D AE RK GF F +G L AE+ V A++ S Sbjct: 61 VGAVAVLFLFVVMMLDVDF--AEMRK--GFADYFVVGGLVALALLAEIGVVAAS--ANSV 114 Query: 118 EGE-LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 EG N E + VLYT Y +++G +LL++MIGAIVL LRHR D+KRQ + Sbjct: 115 EGRNFDPSPGADTNAEALSNVLYTDYLLLFQMAGIVLLVAMIGAIVLTLRHRPDVKRQKV 174 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + ++ ++KV G+GI Sbjct: 175 EEQTARRREEAVELIKVNPGQGI 197 >gi|209964541|ref|YP_002297456.1| NADH-quinone oxidoreductase chain J [Rhodospirillum centenum SW] gi|209958007|gb|ACI98643.1| NADH-quinone oxidoreductase chain J [Rhodospirillum centenum SW] Length = 204 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 127/204 (62%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ + FY+F+ + + + +VV+ RNP++SV LI AF NAA LFLL+GAEF+AMI ++ Sbjct: 1 MVLSAAAFYVFAAILLAAGVMVVSARNPVHSVLYLIVAFFNAAVLFLLIGAEFIAMILII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDI E+ ++ LG+ IL AEL + ++ V Sbjct: 61 VYVGAVAVLFLFVVMMLDISFQEIRRTYRQYVPLGALIGTILMAELALVTVSWAVAPDAA 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 NN E +G+VLYT Y + ++SG ILL++MIGAIVL LR R ++RQ Sbjct: 121 ASLAAPTPADTAVNNTEALGQVLYTHYVFAFQVSGLILLVAMIGAIVLTLRSRGGLRRQV 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I++Q+ P+ + + KV + G+ Sbjct: 181 IAQQIRRRPEEVLSVRKVPTRGGV 204 >gi|239946839|ref|ZP_04698592.1| NADH-quinone oxidoreductase subunit J [Rickettsia endosymbiont of Ixodes scapularis] gi|239921115|gb|EER21139.1| NADH-quinone oxidoreductase subunit J [Rickettsia endosymbiont of Ixodes scapularis] Length = 205 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 125/201 (62%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + IS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISGLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL---IVCASNFMVFSAEGEL 121 V V FLF+IMMLD+ + K S FI I+ A+L I+ + + FS++ Sbjct: 63 VAVLFLFVIMMLDMHFNKTITQLKENLALSIFIALIMFADLVTVILLGTKNINFSSDISF 122 Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + NN+ N IG VLYT + P +++G IL ++MI I L L+ R +KRQDISK Sbjct: 123 AI----TNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N +N+++M K KG+ Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199 >gi|153009742|ref|YP_001370957.1| NADH dehydrogenase subunit J [Ochrobactrum anthropi ATCC 49188] gi|151561630|gb|ABS15128.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 124/192 (64%), Gaps = 12/192 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M Sbjct: 18 IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 77 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127 MLD+D KRG L +G IL ELI V ASN F +G + + + Sbjct: 78 MLDVDFS----ELKRGALQYAPVGALVGLILLGELIFVFASNMFAPKLGQGAVPIPNIAE 133 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187 +N +G +LYT + + +++G +LL++MIGAIVL LRH+ ++KRQ I Q+ P+ + Sbjct: 134 RSNTAALGDILYTDFVFYFQVAGLVLLVAMIGAIVLTLRHKPNVKRQSIPTQVARTPETA 193 Query: 188 IVMVKVKSGKGI 199 I + KV++GKGI Sbjct: 194 IEIKKVETGKGI 205 >gi|51473958|ref|YP_067715.1| NADH dehydrogenase subunit J [Rickettsia typhi str. Wilmington] gi|81610752|sp|Q68VV9|NUOJ_RICTY RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|51460270|gb|AAU04233.1| NADH dehydrogenase (ubiquinone) subunit J [Rickettsia typhi str. Wilmington] Length = 205 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 124/201 (61%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + IISS VV +N +YSV LIF F+NAAGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFTFINAAGLMILLGAEFLAMLLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAE--GELS 122 V V FLF+IMMLDI+ A + + S FI I+ +L++ ++ S + S Sbjct: 63 VAVLFLFVIMMLDINFNQAITKLRENLSLSIFITLIMFVDLVIT----VILSTKNINHSS 118 Query: 123 RLVFK-GNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + F NN+ N IG VLYT + P +++G IL ++MI I L L+ R +K QDI K Sbjct: 119 NISFAIANNISNTKAIGSVLYTDFMLPFQMAGLILFVAMISCITLTLKKRERVKYQDIRK 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N N I+M K KG+ Sbjct: 179 QLSHNKGNVILMTKPILNKGV 199 >gi|84516723|ref|ZP_01004081.1| NADH dehydrogenase subunit J [Loktanella vestfoldensis SKA53] gi|84509191|gb|EAQ05650.1| NADH dehydrogenase subunit J [Loktanella vestfoldensis SKA53] Length = 201 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 121/194 (62%), Gaps = 2/194 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ + V RNP++SV LI AF+++AGLF+ LGAEFVAM+ ++VYVGAV Sbjct: 8 FYLFAISTVTGGLFTVISRNPVHSVLWLILAFLSSAGLFVTLGAEFVAMLMIIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGELSRLV 125 V FLF++MMLD+D + + + IG++ + A FS EG ++ V Sbjct: 68 VLFLFVVMMLDVDFAGLKAEMTKYLPLALLIGVVILMQLAMALGVWGFSEGVEGRIAAPV 127 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 + +N +G +LY QY ++SG ILL++MIGAIVL LRHR DIKRQ++ Q+ +P Sbjct: 128 GELDNTRALGMLLYDQYFLLFQLSGLILLVAMIGAIVLTLRHRVDIKRQNVLNQMYRDPA 187 Query: 186 NSIVMVKVKSGKGI 199 ++ + VK G+G+ Sbjct: 188 KAMELRDVKPGQGL 201 >gi|259418750|ref|ZP_05742667.1| NADH-quinone oxidoreductase subunit j [Silicibacter sp. TrichCH4B] gi|259344972|gb|EEW56826.1| NADH-quinone oxidoreductase subunit j [Silicibacter sp. TrichCH4B] Length = 198 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 4 FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLV 125 V FLF++MMLD+D + R + IG IL +I S LS+ + Sbjct: 64 VLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVIAYGSWESAHDVAQNLSQPI 123 Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 +N E +G ++Y QY +++G ILL++MIGAIVL LRHR+D+KRQD+ Q+ +P Sbjct: 124 PVDRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDVLAQMYRDP 183 Query: 185 DNSIVMVKVKSGKGI 199 ++ + +K G+G+ Sbjct: 184 AKAMELKDIKPGQGL 198 >gi|254450873|ref|ZP_05064310.1| NADH dehydrogenase i, j subunit [Octadecabacter antarcticus 238] gi|198265279|gb|EDY89549.1| NADH dehydrogenase i, j subunit [Octadecabacter antarcticus 238] Length = 197 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 87/196 (44%), Positives = 125/196 (63%), Gaps = 6/196 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F+ I + V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 4 FYAFAVTTIGGGLMTVLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRLVF 126 V FLF++MMLD+D + R + IG++ L+ A F V+ ++G +RLV Sbjct: 64 VLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVL--LMQLALAFGVWDYSDGFETRLVQ 121 Query: 127 KGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 +VEN +G VLY Y ++SG ILL++MIGAIVL LRHR D+KRQ++ Q+ + Sbjct: 122 PIMDVENTKQLGLVLYDDYFLIFQLSGLILLVAMIGAIVLTLRHRTDVKRQNVMVQMSRD 181 Query: 184 PDNSIVMVKVKSGKGI 199 P + + VK G+G+ Sbjct: 182 PAKQMELKDVKPGQGL 197 >gi|15893147|ref|NP_360861.1| NADH dehydrogenase subunit J [Rickettsia conorii str. Malish 7] gi|238650810|ref|YP_002916665.1| NADH dehydrogenase subunit J [Rickettsia peacockii str. Rustic] gi|20139034|sp|Q92G99|NUOJ_RICCN RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|15620356|gb|AAL03762.1| NADH dehydrogenase I chain J [Rickettsia conorii str. Malish 7] gi|238624908|gb|ACR47614.1| NADH dehydrogenase subunit J [Rickettsia peacockii str. Rustic] Length = 205 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 88/201 (43%), Positives = 125/201 (62%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121 V V FLF+IMMLD+ + K S FI I+ A+L++ + + F++ Sbjct: 63 VAVLFLFVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122 Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + NN+ N IG VLYT + P +++G IL ++MI I L L+ R +KRQDISK Sbjct: 123 TI----TNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N +N+++M K KG+ Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199 >gi|229587152|ref|YP_002845653.1| NADH dehydrogenase subunit J [Rickettsia africae ESF-5] gi|228022202|gb|ACP53910.1| NADH dehydrogenase I chain J [Rickettsia africae ESF-5] Length = 205 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 88/201 (43%), Positives = 125/201 (62%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121 V V FLF+IMMLD+ + K S FI I+ A+L++ + + F++ Sbjct: 63 VAVLFLFVIMMLDMHFNKKITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122 Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + NN+ N IG VLYT + P +++G IL ++MI I L L+ R +KRQDISK Sbjct: 123 TI----TNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N +N+++M K KG+ Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199 >gi|254718920|ref|ZP_05180731.1| NADH dehydrogenase subunit J [Brucella sp. 83/13] gi|265983907|ref|ZP_06096642.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella sp. 83/13] gi|306838232|ref|ZP_07471084.1| NADH dehydrogenase subunit J [Brucella sp. NF 2653] gi|264662499|gb|EEZ32760.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella sp. 83/13] gi|306406676|gb|EFM62903.1| NADH dehydrogenase subunit J [Brucella sp. NF 2653] Length = 205 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/192 (47%), Positives = 120/192 (62%), Gaps = 12/192 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M Sbjct: 18 IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 77 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127 MLD+D KRG L +G IL ELI V AS F +G L V Sbjct: 78 MLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVAT 133 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187 N +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ I Q+ P+ + Sbjct: 134 RTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETA 193 Query: 188 IVMVKVKSGKGI 199 I + KV+ GKGI Sbjct: 194 IEIRKVEMGKGI 205 >gi|34581183|ref|ZP_00142663.1| NADH dehydrogenase I chain J [Rickettsia sibirica 246] gi|28262568|gb|EAA26072.1| NADH dehydrogenase I chain J [Rickettsia sibirica 246] Length = 205 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/201 (43%), Positives = 125/201 (62%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121 V V FLF+IMMLD+ + K S FI I+ A+L++ + + F++ Sbjct: 63 VAVLFLFVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122 Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + NN+ N IG +LYT + P +++G IL ++MI I L L+ R +KRQDISK Sbjct: 123 TI----TNNISNTKAIGGILYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N +N+++M K KG+ Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199 >gi|126727167|ref|ZP_01743004.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2150] gi|126703595|gb|EBA02691.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2150] Length = 204 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/197 (43%), Positives = 128/197 (64%), Gaps = 5/197 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ + + S L V R P++SV LI AF ++AGLF+LLGAEF+AM+ ++VYVGAV Sbjct: 8 FYLFAIVTVGSGLLCVLARQPVHSVLWLICAFFSSAGLFVLLGAEFIAMLLVIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL-IVCASNFMVFSAEGELSRLV 125 V FLF++MMLD+D + + + IG +L EL +V S + AEG + + Sbjct: 68 VLFLFVVMMLDVDFAQLKAEMAKFMPVALLIGVVLLMELGLVFGSWTVSPDAEGLRAAVT 127 Query: 126 FKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + V N +G+++YT+Y Y + +G ILL++MIGAIVL LRHR+D+KRQ I Q+ Sbjct: 128 PALDEVHNTAALGQLIYTKYIYLFQAAGLILLVAMIGAIVLTLRHRKDVKRQVIRDQILR 187 Query: 183 NPDNSIVMVKVKSGKGI 199 +P +++ + VK G+G+ Sbjct: 188 DPKDAMEIKDVKPGQGL 204 >gi|157826242|ref|YP_001493962.1| NADH dehydrogenase subunit J [Rickettsia akari str. Hartford] gi|157800200|gb|ABV75454.1| NADH dehydrogenase subunit J [Rickettsia akari str. Hartford] Length = 205 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/201 (43%), Positives = 121/201 (60%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N IYSV LIF F+N AGL +LLGAEF+AMI +V+YVGA Sbjct: 3 IFFYLFATLITISSLCVVLSKNSIYSVLCLIFTFINGAGLMILLGAEFLAMILIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121 V V FLF+IMMLD+ + K S FI I+ +LI+ + + FS++ Sbjct: 63 VAVLFLFVIMMLDMHFNKTITQLKENLALSIFIALIMFCDLIIIILLGTKNINFSSDISF 122 Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + NN+ N IG VLYT + P +++G IL ++MI I L L+ R +K QDI+K Sbjct: 123 AI----TNNISNTKAIGNVLYTNFMLPFQMAGLILFVAMIACITLTLKKREGVKHQDITK 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N N ++M K KG+ Sbjct: 179 QLSHNKGNVVLMTKPTLNKGV 199 >gi|67459647|ref|YP_247271.1| NADH dehydrogenase subunit J [Rickettsia felis URRWXCal2] gi|75535957|sp|Q4UK29|NUOJ_RICFE RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|67005180|gb|AAY62106.1| NADH dehydrogenase I chain J [Rickettsia felis URRWXCal2] Length = 205 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/204 (43%), Positives = 122/204 (59%), Gaps = 17/204 (8%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVC------ASNFM---VF 115 V V FLF+IMMLD+ + K L SF I+ A+L+ NF+ F Sbjct: 63 VAVLFLFVIMMLDMHFNKTITQLKENLALSSFIALIMFADLVTIILLGTKNINFISDVSF 122 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ++S N + IGKVLYT + P +++G IL ++MI I L L+ R +K QD Sbjct: 123 TITNDIS-------NTKAIGKVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKHQD 175 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I+KQL N N ++M K KG+ Sbjct: 176 ITKQLSHNKSNVVLMTKPTLNKGV 199 >gi|83858405|ref|ZP_00951927.1| NADH dehydrogenase subunit J [Oceanicaulis alexandrii HTCC2633] gi|83853228|gb|EAP91080.1| NADH dehydrogenase subunit J [Oceanicaulis alexandrii HTCC2633] Length = 202 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 126/199 (63%), Gaps = 11/199 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S A++S+ +VV +NP+ +V LI AF +AAGLF+LLGAEF+AMI ++VYVGAV Sbjct: 7 FYILSATAVLSALMVVIAKNPVRAVLFLILAFFSAAGLFVLLGAEFLAMILVIVYVGAVA 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSAEGELSRL 124 V FLF++MMLDID + K GF+ +G LA I+ + SA+ + L Sbjct: 67 VLFLFVVMMLDIDFA----QLKEGFISHAPLGGVVALALAGILAMTGLSWVSADSASAAL 122 Query: 125 VFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 NV +G ++Y +Y +I+G +LL++MIGAIVL LRHR +KRQD+ Q+ Sbjct: 123 QSPTPDDMTNVAALGALIYDRYVLFFQIAGLVLLVAMIGAIVLTLRHRDGVKRQDMHAQV 182 Query: 181 ESNPDNSIVMVKVKSGKGI 199 ++S+ +V +KSG+GI Sbjct: 183 NRKREDSVEIVDIKSGEGI 201 >gi|126740390|ref|ZP_01756078.1| NADH dehydrogenase subunit J [Roseobacter sp. SK209-2-6] gi|126718526|gb|EBA15240.1| NADH dehydrogenase subunit J [Roseobacter sp. SK209-2-6] Length = 200 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGEL--SRL 124 V FLF++MMLD+D + + + IG ++ + ++ ++ EL Sbjct: 66 VLFLFVVMMLDVDFAALKAEMAQYMPLALLIGLVILMQFVMAYGSWESAHGASELLAQPT 125 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 +N E +G ++Y QY ++SG ILL++MIGAI+L LRHR+D+KRQD+ Q+ +P Sbjct: 126 PADKHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIMLTLRHRQDVKRQDVLAQMYRDP 185 Query: 185 DNSIVMVKVKSGKGI 199 ++ + VK G+G+ Sbjct: 186 AKAMELKDVKPGQGL 200 >gi|85703192|ref|ZP_01034296.1| NADH dehydrogenase subunit J [Roseovarius sp. 217] gi|85672120|gb|EAQ26977.1| NADH dehydrogenase subunit J [Roseovarius sp. 217] Length = 202 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 129/204 (63%), Gaps = 7/204 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FYLF+ +I V RNP++SV LI +F++AAGLF+LLGAEFVAM+ ++ Sbjct: 1 MTIAAMAFYLFAVSLLIGGLFTVISRNPVHSVLWLILSFISAAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D + + + IG IL + + N+ + A+G Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMAKYMPLALLIGVILLMQFGLVFGNWQM--ADG 118 Query: 120 -ELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 E +R + VEN +G +LY Y +++G ILL++MIGAIVL LRHR D+KRQD Sbjct: 119 AEAARRSVTPDGVENTAALGLLLYDTYFILFQLAGLILLVAMIGAIVLTLRHRTDVKRQD 178 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q+ +P ++ + VK G+G+ Sbjct: 179 VLAQMYRDPAKAMELRDVKPGQGL 202 >gi|87200305|ref|YP_497562.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Novosphingobium aromaticivorans DSM 12444] gi|87135986|gb|ABD26728.1| NADH dehydrogenase subunit J [Novosphingobium aromaticivorans DSM 12444] Length = 205 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 128/206 (62%), Gaps = 13/206 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q FYLF+ + I S + + RNP++SV LI AF NAAGL +L GAEF+AM+ ++VY Sbjct: 2 IQVFAFYLFATLCIFSGAVTILARNPVHSVLWLILAFFNAAGLMVLAGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFM 113 VGAV V FLF++MMLDID AE R GF+ +F +G+ A L+V S + Sbjct: 62 VGAVAVLFLFVVMMLDIDF--AELRA--GFIKNFPLGMALAVVLFVELFVGLVVRGSGAV 117 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + +N+E+IG +LY++Y + E +G +LL++MIGAIVL R R D + Sbjct: 118 ALGKADGSAMQAAGASNIESIGALLYSRYLFLFEAAGIVLLVAMIGAIVLTHRQRTDTRG 177 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q++SKQ+ P+++ V ++ + GKG+ Sbjct: 178 QNVSKQVARRPEDATVNLQPEVGKGV 203 >gi|239831695|ref|ZP_04680024.1| NADH-quinone oxidoreductase subunit J [Ochrobactrum intermedium LMG 3301] gi|239823962|gb|EEQ95530.1| NADH-quinone oxidoreductase subunit J [Ochrobactrum intermedium LMG 3301] Length = 215 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/192 (46%), Positives = 124/192 (64%), Gaps = 12/192 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF++M Sbjct: 28 IASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVVM 87 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVFK 127 MLD+D KRG L +G IL ELI V ASN F +G + + + Sbjct: 88 MLDVDFS----ELKRGALQYAPVGALVGLILLGELIFVFASNMFAPKLGQGAVPIPNIAE 143 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187 +N +G +LYT + + +++G +LL++MIGAIVL LRH+ ++KRQ I Q+ P+ + Sbjct: 144 RSNTAALGDILYTDFVFYFQVAGLVLLVAMIGAIVLTLRHKPNVKRQSIPAQVARTPETA 203 Query: 188 IVMVKVKSGKGI 199 I + +V++GKGI Sbjct: 204 IEIKQVETGKGI 215 >gi|157964938|ref|YP_001499762.1| NADH dehydrogenase subunit J [Rickettsia massiliae MTU5] gi|157844714|gb|ABV85215.1| NADH dehydrogenase I chain J [Rickettsia massiliae MTU5] Length = 208 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/201 (43%), Positives = 124/201 (61%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 6 IFFYLFATLITISSLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 65 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121 V V FLF+IMMLD+ + K S I I+ A+L++ + + F++ Sbjct: 66 VAVLFLFVIMMLDMHFNKTITQLKENLALSILIALIMFADLVIIILLGTKNINFNSNVSF 125 Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + NN+ N IG VLYT + P +++G IL ++MI I L L+ R +KRQDISK Sbjct: 126 AI----TNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 181 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N +N+++M K KG+ Sbjct: 182 QLRHNKENTVLMTKPILNKGV 202 >gi|149202656|ref|ZP_01879628.1| NADH dehydrogenase subunit J [Roseovarius sp. TM1035] gi|149143938|gb|EDM31972.1| NADH dehydrogenase subunit J [Roseovarius sp. TM1035] Length = 202 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 127/204 (62%), Gaps = 7/204 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FYLF+ + + V RNP++SV LI +F++AAGLF+LLGAEFVAM+ ++ Sbjct: 1 MTFAAMAFYLFAVSLLTGGLMTVISRNPVHSVLWLILSFISAAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D + + + IG IL + + N+ + A+G Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMAKYMPLALLIGVILLMQFGLAFGNWEM--ADG 118 Query: 120 -ELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 E +R VEN +G +LY Y ++SG ILL++MIGAIVL LRHR D+KRQD Sbjct: 119 AEAARRAVTPEGVENTAALGLLLYDTYFILFQLSGLILLVAMIGAIVLTLRHRTDVKRQD 178 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q+ +P ++ + VK G+G+ Sbjct: 179 VLAQMYRDPAKAMELRDVKPGQGL 202 >gi|254439778|ref|ZP_05053272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Octadecabacter antarcticus 307] gi|198255224|gb|EDY79538.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Octadecabacter antarcticus 307] Length = 201 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 120/194 (61%), Gaps = 2/194 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F+ I + V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 8 FYAFAATTIGGGLMTVLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLV 125 V FLF++MMLD+D + R + IG++ + A +S E L++ + Sbjct: 68 VLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVLLMQLAMAFGVWDYSDGFETRLAQPI 127 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 N + +G V+Y Y ++SG ILL++MIGAIVL LRHR D+KRQ++ Q+ +P Sbjct: 128 VDVENTKQLGLVIYDDYFLIFQLSGLILLVAMIGAIVLTLRHRTDVKRQNVMVQMSRDPA 187 Query: 186 NSIVMVKVKSGKGI 199 ++ + VK G+G+ Sbjct: 188 KAMELKDVKPGQGL 201 >gi|254466369|ref|ZP_05079780.1| NADH dehydrogenase i, j subunit [Rhodobacterales bacterium Y4I] gi|206687277|gb|EDZ47759.1| NADH dehydrogenase i, j subunit [Rhodobacterales bacterium Y4I] Length = 200 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 120/197 (60%), Gaps = 7/197 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ I V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISTITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V FLF++MMLD+D + R + IG++ V A F V+ + L+ Sbjct: 66 VLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMA--FGVWETAHQAPELLAN 123 Query: 128 G-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 +N E +G ++Y QY +++G ILL++MIGAIVL LRHR D+KRQD+ Q+ Sbjct: 124 PVPADRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRTDVKRQDVVAQMMR 183 Query: 183 NPDNSIVMVKVKSGKGI 199 +P ++ + VK G+G+ Sbjct: 184 DPAKAMELRDVKPGQGL 200 >gi|114327957|ref|YP_745114.1| NADH-quinone oxidoreductase chain J [Granulibacter bethesdensis CGDNIH1] gi|114316131|gb|ABI62191.1| NADH-quinone oxidoreductase chain J [Granulibacter bethesdensis CGDNIH1] Length = 247 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/199 (41%), Positives = 132/199 (66%), Gaps = 5/199 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FY+FS + I+S +VV+ RNP+++V LI AF NAAGLFLL GAEF+AMI ++VYVG Sbjct: 4 AIAFYVFSAILIVSGAMVVSARNPVHAVLFLILAFFNAAGLFLLTGAEFLAMILVIVYVG 63 Query: 65 AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 AV V FLF++MML+I+ EV + ++ +G+ G+L EL + + V L R Sbjct: 64 AVAVLFLFVVMMLNINFAEVRDGWQRYAPVGAAIGGVLLVELAMVLGGWQVAPGASAL-R 122 Query: 124 LVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + ++V+N +G+++YT Y +++G ILL++MIGAIVL LR R+ + Q+I++Q+ Sbjct: 123 FSPRPDHVQNTVALGQIVYTHYVMLFQMAGLILLVAMIGAIVLTLRDRKTSRHQNIAEQV 182 Query: 181 ESNPDNSIVMVKVKSGKGI 199 ++++ +V G+GI Sbjct: 183 NRRIEDTLQLVNAPVGQGI 201 >gi|92117734|ref|YP_577463.1| NADH dehydrogenase subunit J [Nitrobacter hamburgensis X14] gi|91800628|gb|ABE63003.1| NADH dehydrogenase subunit J [Nitrobacter hamburgensis X14] Length = 212 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +V++ RNP++SV LI AFVNAAGLF+L+GAEF+AMI +V Sbjct: 1 MILPALFFYLFAGVCVASAAMVISSRNPVHSVLFLILAFVNAAGLFILMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAE 118 VYVGAV V FLF+IMMLD++ AE R+ GFL +G++ A + + +V ++ Sbjct: 61 VYVGAVAVLFLFVIMMLDVNF--AELRE--GFLEYLPLGLVIAAIFLLELLLVVGGWTLN 116 Query: 119 GELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 +++ + +N E IG VLYT+Y + +++G +LL++M+GAIVL LRHR +KR Sbjct: 117 PTVTKSITAAIPGDVSNTEAIGLVLYTKYIHYFQLAGMVLLVAMVGAIVLTLRHRASVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDI+ Q P+ ++ + KV SG+G+ Sbjct: 177 QDINVQNARTPEMAMSVRKVASGRGL 202 >gi|86749701|ref|YP_486197.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris HaA2] gi|86572729|gb|ABD07286.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] Length = 212 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 92/211 (43%), Positives = 132/211 (62%), Gaps = 21/211 (9%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M LFFYL++ AI ++ +VV RNP++S LI FVNAAG+F+L+GAEF+AMI +V Sbjct: 1 MSMPVLFFYLYAGAAIAAAVMVVFARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL------------AAELIVC 108 VYVGAV V FLF+IMMLD+D R + GFL G+L A ++ Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFS----RLREGFLEYLPFGLLIGFIFLAELLLLAGGWVIT 116 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +A + +N E +G VLYT+Y + +ISG ILL++MIGAIVL LRH+ Sbjct: 117 PTVTKTITAP-----IPTDVSNTEALGLVLYTRYIHYFQISGVILLVAMIGAIVLTLRHK 171 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 + +KRQ+IS+Q + + ++ + KVK G+G+ Sbjct: 172 KSVKRQNISEQNARSKETAMAIRKVKPGQGL 202 >gi|158423301|ref|YP_001524593.1| NADH ubiquinone oxidoreductase chain J protein [Azorhizobium caulinodans ORS 571] gi|158330190|dbj|BAF87675.1| NADH ubiquinone oxidoreductase chain J protein [Azorhizobium caulinodans ORS 571] Length = 202 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 90/190 (47%), Positives = 129/190 (67%), Gaps = 13/190 (6%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+F+V++ RNP+YSV LI AFVNAAGLF+LLG EF+A+I +VVYVGAV V FLF++MML Sbjct: 18 SAFMVISSRNPVYSVLFLILAFVNAAGLFILLGVEFLALILVVVYVGAVAVLFLFVVMML 77 Query: 78 DID-IEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVFSAEGELSRLV--FKGN 129 D+D +E+ ++GFL +G I AEL++ + + V + Sbjct: 78 DVDFVEL-----RQGFLQYLPVGAIVGLIFLAELVLVVGTWAAGPGVTVATNAVMTYPRG 132 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 N +G+VLYT Y Y +I+GF+LL++MIGAIVL LRH+ ++KRQ+IS Q+ P+ ++ Sbjct: 133 NTHALGQVLYTDYIYFFQIAGFVLLVAMIGAIVLTLRHKPNVKRQNISAQVARTPETAME 192 Query: 190 MVKVKSGKGI 199 +VKVK G+GI Sbjct: 193 VVKVKPGQGI 202 >gi|148255904|ref|YP_001240489.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. BTAi1] gi|146408077|gb|ABQ36583.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. BTAi1] Length = 212 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 135/206 (65%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +V+ +NP++SV LI AFVNA+GLF+L+GAEF+AMI +V Sbjct: 1 MILPALFFYLFAAVCVASAVMVIVSKNPVHSVLYLILAFVNASGLFVLMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFMVF 115 VYVGAV V FLF+IMMLD+D + GFL IG++ EL++ S +++ Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFT----ELREGFLQYMPIGLVIGGIFLFELLLTVSYWVIN 116 Query: 116 SAEGELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + N N E +G VLYT+Y + ++SG ILL++MIGAIVL LRH+ +KR Sbjct: 117 PTTPKAITAAIPTNVTNTEALGLVLYTKYIHYFQLSGMILLVAMIGAIVLTLRHKVSVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDI+ Q P+ ++ + KV G+G+ Sbjct: 177 QDINVQNARTPEMAMAVRKVAVGQGL 202 >gi|162148802|ref|YP_001603263.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter diazotrophicus PAl 5] gi|209545450|ref|YP_002277679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter diazotrophicus PAl 5] gi|161787379|emb|CAP56974.1| putative NADH-quinone oxidoreductase chain J [Gluconacetobacter diazotrophicus PAl 5] gi|209533127|gb|ACI53064.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter diazotrophicus PAl 5] Length = 253 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 85/200 (42%), Positives = 127/200 (63%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+F+ + ++S+ +VV+ RNP++SV LI AF NAAGLFL+ GAEF+AMI ++VY Sbjct: 2 MAQIVFYVFATVLVLSAGMVVSARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMILVIVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD+ E+ E ++ G+ +L AEL + ++ V ++ Sbjct: 62 VGAVAVLFLFVVMMLDVRFTEMREGLQRYAPFGAAVGAVLFAELALAFGHWQVARNIADV 121 Query: 122 SRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 S LV N +G VLYT Y + E G +LL++MIGAIVL LR R +RQ+I +Q Sbjct: 122 SHLVPTPGRTNTAALGDVLYTHYIFLFESCGLVLLVAMIGAIVLTLRERPVGRRQNIERQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 E +S+ M+ + G+G+ Sbjct: 182 HERTAADSLDMMALPLGQGV 201 >gi|89053681|ref|YP_509132.1| NADH dehydrogenase subunit J [Jannaschia sp. CCS1] gi|88863230|gb|ABD54107.1| NADH dehydrogenase subunit J [Jannaschia sp. CCS1] Length = 205 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 123/204 (60%), Gaps = 18/204 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ + VT +NP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 8 FYLFALSVVAGGLFTVTSKNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLMIIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFI-------GILAAELIVCASNFMVF 115 V FLF++MMLD+D E+A+ G +G + G+ A V S + Sbjct: 68 VLFLFVVMMLDVDFAELKAEMAKYVPLGGLIGVILLMQLTLAFGVWEAADGVDISATPIG 127 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + EG +N + +G ++Y Y ++SG ILL++M+GAIVL LRHR D+KRQD Sbjct: 128 TPEGA------GDHNTQALGLIVYDDYFLAFQLSGLILLVAMVGAIVLTLRHRVDVKRQD 181 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q+ +P ++ + VK G+G+ Sbjct: 182 VVAQMMRDPAKAMELKDVKPGQGL 205 >gi|255263382|ref|ZP_05342724.1| NADH-quinone oxidoreductase subunit j [Thalassiobium sp. R2A62] gi|255105717|gb|EET48391.1| NADH-quinone oxidoreductase subunit j [Thalassiobium sp. R2A62] Length = 201 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 84/196 (42%), Positives = 124/196 (63%), Gaps = 6/196 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F+ I V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 8 FYAFAVSTIAGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRLVF 126 V FLF++MMLD+D + + IG++ L+ + F V+ +EG +RL Sbjct: 68 VLFLFVVMMLDVDFAELKAEMSKYLPLGLLIGVIV--LMQLSLAFGVWDYSEGYQTRLAA 125 Query: 127 -KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 +G+ N E +G +LY +Y +++G ILL++MIGAIVL LRHR D+KRQ+I Q+ + Sbjct: 126 PEGDAMNTEALGLLLYDKYILLFQLAGLILLVAMIGAIVLTLRHREDVKRQNIVSQILRD 185 Query: 184 PDNSIVMVKVKSGKGI 199 P + + VK G+G+ Sbjct: 186 PAKQMKLKDVKPGQGL 201 >gi|258542713|ref|YP_003188146.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-01] gi|256633791|dbj|BAH99766.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-01] gi|256636850|dbj|BAI02819.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-03] gi|256639903|dbj|BAI05865.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-07] gi|256642959|dbj|BAI08914.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-22] gi|256646014|dbj|BAI11962.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-26] gi|256649067|dbj|BAI15008.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-32] gi|256652054|dbj|BAI17988.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655111|dbj|BAI21038.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-12] Length = 243 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 85/200 (42%), Positives = 129/200 (64%), Gaps = 4/200 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L FY+F+ + + S+ +V++ RNP++SV LI AF NAAGLFL+ GAEF+AM+ ++VY Sbjct: 8 MAQLVFYVFATVLLFSAVMVISARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMLLVIVY 67 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--G 119 VGAV V FLF++MMLDID + E +K LG G+L AEL++ SN+ + A Sbjct: 68 VGAVAVLFLFVVMMLDIDFSSLREGFQKHAPLGVCVGGVLFAELLMAFSNWKMAPANIVA 127 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L+ V + N E +G V+YT Y + + G +LL++MIGAIVL LR R +RQ+I +Q Sbjct: 128 PLNP-VPQLTNTEALGTVIYTHYVFLFQACGLVLLVAMIGAIVLTLRERATGRRQNIDQQ 186 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + ++ +V++ G+ + Sbjct: 187 HARTVEETLELVQLPLGENV 206 >gi|165933782|ref|YP_001650571.1| NADH:ubiquinone oxidoreductase subunit J [Rickettsia rickettsii str. Iowa] gi|165908869|gb|ABY73165.1| NADH-quinone oxidoreductase chain J [Rickettsia rickettsii str. Iowa] Length = 205 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 124/201 (61%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121 V + FL +IMMLD+ + K S FI I+ A+L++ + + F++ Sbjct: 63 VALLFLSVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122 Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + NN+ N IG VLYT + P +++G IL ++MI I L L+ R +KRQDISK Sbjct: 123 TI----TNNISNTKAIGSVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N +N+++M K KG+ Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199 >gi|329114687|ref|ZP_08243446.1| NADH-quinone oxidoreductase subunit J [Acetobacter pomorum DM001] gi|326696167|gb|EGE47849.1| NADH-quinone oxidoreductase subunit J [Acetobacter pomorum DM001] Length = 243 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 85/200 (42%), Positives = 128/200 (64%), Gaps = 4/200 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L FY+F+ + + S+ +V++ RNP++SV LI AF NAAGLFL+ GAEF+AM+ ++VY Sbjct: 8 MAQLVFYVFATVLLFSAVMVISARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMLLVIVY 67 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--G 119 VGAV V FLF++MMLDID + E +K LG G+L AEL++ SN+ + A Sbjct: 68 VGAVAVLFLFVVMMLDIDFSSLREGFQKHAPLGVCVGGVLFAELLMAFSNWKMAPANIVA 127 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L+ + N E +G V+YT Y + + G +LL++MIGAIVL LR R +RQ+I KQ Sbjct: 128 PLNP-APQLTNTEALGTVIYTHYVFLFQACGLVLLVAMIGAIVLTLRERATGRRQNIDKQ 186 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + ++ +V++ G+ + Sbjct: 187 HARTVEETLELVQLPLGENV 206 >gi|189184496|ref|YP_001938281.1| NADH dehydrogenase subunit J [Orientia tsutsugamushi str. Ikeda] gi|189181267|dbj|BAG41047.1| NADH dehydrogenase I chain J [Orientia tsutsugamushi str. Ikeda] Length = 202 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 86/196 (43%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LFFYLFS +A++ S V+T +NP+Y+V LIF F N +GL +LLGAEF+A + ++VY GA Sbjct: 2 LFFYLFSVLALLGSIGVITSKNPVYAVLWLIFVFCNTSGLLILLGAEFLAFLLVIVYAGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V + FLF++MML+I + K R L I++ I+ S +V G + Sbjct: 62 VAILFLFVVMMLNIKSDNLVLVKTRTILNIPIYVIISFIFIIDLSIIIVMGF-GNYCPIH 120 Query: 126 FKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 ++ NN ++ IG+VLYT+YA P ++SG ILL++MIG +VL +R R +KRQD Q+ N Sbjct: 121 YEENNLDIKAIGRVLYTEYALPFQLSGIILLIAMIGCVVLTVRKRSGVKRQDHYSQINRN 180 Query: 184 PDNSIVMVKVKSGKGI 199 ++SI +VKV+ KGI Sbjct: 181 RNSSIQVVKVEVNKGI 196 >gi|157829056|ref|YP_001495298.1| NADH dehydrogenase subunit J [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801537|gb|ABV76790.1| NADH dehydrogenase subunit J [Rickettsia rickettsii str. 'Sheila Smith'] Length = 205 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 124/201 (61%), Gaps = 11/201 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIV---CASNFMVFSAEGEL 121 V + FL +IMMLD+ + K S FI I+ A+L++ + + F++ Sbjct: 63 VALLFLSVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122 Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + NN+ N IG VLYT + P +++G IL ++MI I L L+ R +KRQDISK Sbjct: 123 TI----TNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISK 178 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 QL N +N+++M K KG+ Sbjct: 179 QLRHNKENTVLMTKPILNKGV 199 >gi|126736050|ref|ZP_01751794.1| NADH dehydrogenase (quinone) [Roseobacter sp. CCS2] gi|126714607|gb|EBA11474.1| NADH dehydrogenase (quinone) [Roseobacter sp. CCS2] Length = 201 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/194 (40%), Positives = 119/194 (61%), Gaps = 2/194 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ + + V RNP++SV LI AF+++AGLF+ LGAEFVAM+ ++VYVGAV Sbjct: 8 FYLFAVTTVTGGLMTVVSRNPVHSVLWLILAFLSSAGLFVTLGAEFVAMLLIIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGELSRLV 125 V FLF++MMLD+D + + IG++ + A F+ EG ++ Sbjct: 68 VLFLFVVMMLDVDFAELKAEMTKYLPLGLLIGVVILMQLALAFGVWGFADGVEGRIAAPT 127 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 +N +G ++Y +Y ++SG ILL++MIGAIVL LRHR DIKRQ++ Q+ +P Sbjct: 128 GDLDNTRALGLLIYDKYILLFQLSGLILLVAMIGAIVLTLRHRVDIKRQNVLAQMYRDPA 187 Query: 186 NSIVMVKVKSGKGI 199 ++ + VK G+G+ Sbjct: 188 KAMELKDVKPGQGL 201 >gi|260428617|ref|ZP_05782596.1| NADH-quinone oxidoreductase subunit j [Citreicella sp. SE45] gi|260423109|gb|EEX16360.1| NADH-quinone oxidoreductase subunit j [Citreicella sp. SE45] Length = 200 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/198 (41%), Positives = 124/198 (62%), Gaps = 9/198 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS I+ V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFSLCTILGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS----AEGELSR 123 V FLF++MMLD+D + + IG++ L+ F + A G+LS Sbjct: 66 VLFLFVVMMLDVDFAELRAGMAKYMPLALLIGVVI--LMQLGMAFGAWETSDLAAGQLSA 123 Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 V G+ N +G ++Y +Y +++G ILL++MIGAIVL LRHR+D+KRQ++ Q+ Sbjct: 124 PV-PGDMQNTAALGVLIYDRYFLAFQLAGLILLVAMIGAIVLTLRHRQDVKRQNVLAQMW 182 Query: 182 SNPDNSIVMVKVKSGKGI 199 +P ++ + VK G+G+ Sbjct: 183 RDPAKAMELKDVKPGQGL 200 >gi|254419970|ref|ZP_05033694.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Brevundimonas sp. BAL3] gi|196186147|gb|EDX81123.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Brevundimonas sp. BAL3] Length = 208 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/204 (44%), Positives = 136/204 (66%), Gaps = 10/204 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + FYL + A++S LVVT RNP++SV LI AF +AAGLF+LLGAEF+AM+ +VVY Sbjct: 2 LQGIAFYLLAATAVVSGLLVVTARNPVHSVLWLILAFFSAAGLFVLLGAEFLAMLLVVVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD+D +++ E + +G+ +L AE+I+ +S + G Sbjct: 62 VGAVAVLFLFVVMMLDVDFLKLREGYARYLPIGAVIAAVLLAEMILVSSAVI---QGGAT 118 Query: 122 SRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + L G +NVE IG+VLYT Y Y + +G +LL++MIGAI L LRH+ IKRQ+ Sbjct: 119 AGLAGPGAPDPDMSNVEAIGRVLYTDYIYFFQAAGIVLLIAMIGAITLTLRHKPHIKRQN 178 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q+ + ++ + V++G+G+ Sbjct: 179 ITDQVNRSAAKAMEVKSVQTGQGV 202 >gi|114765007|ref|ZP_01444154.1| NADH dehydrogenase subunit J [Pelagibaca bermudensis HTCC2601] gi|114542554|gb|EAU45579.1| NADH dehydrogenase subunit J [Roseovarius sp. HTCC2601] Length = 202 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/199 (41%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ I+ V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFALCTIVGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS----AEGELSR 123 V FLF++MMLD+D + + IG++ L+ F V+ A +LS Sbjct: 66 VLFLFVVMMLDVDFAELRAGMAKYMPLALLIGVIL--LMQLGMAFGVWEVSEIAASQLSA 123 Query: 124 ---LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 L + N +G +LY +Y +++G ILL++MIGAIVL LRHR+D+KRQ++ Q+ Sbjct: 124 PTPLATETQNTAALGLLLYDRYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQNVLAQM 183 Query: 181 ESNPDNSIVMVKVKSGKGI 199 +P ++ + VK G+G+ Sbjct: 184 YRDPKKAMELRDVKPGQGL 202 >gi|316933902|ref|YP_004108884.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rhodopseudomonas palustris DX-1] gi|315601616|gb|ADU44151.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodopseudomonas palustris DX-1] Length = 212 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 133/206 (64%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M LFFYL++ +AI ++ +VV RNP++S LI FVNAAG+F+L+GAEF+AMI +V Sbjct: 1 MSMPVLFFYLYAGVAIAAAVMVVFARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG----SFFIGILAAELIVCASNFMVFS 116 VYVGAV V FLF+IMMLD+D + GFL IG++ ++ + V S Sbjct: 61 VYVGAVAVLFLFVIMMLDVDYS----ELREGFLEYLPFGLLIGVIFLAELLLLAGGWVIS 116 Query: 117 ---AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + + +N E +G VLYT+Y + ++SG ILL++M+GAIVL LRH++ +KR Sbjct: 117 PTVTKTVTAPIPADVSNTEALGLVLYTRYIHYFQVSGMILLVAMVGAIVLTLRHKKKVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDI+ Q + + ++ + VK+G+G+ Sbjct: 177 QDIAAQNARSKETAMAIRHVKTGQGL 202 >gi|39936006|ref|NP_948282.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris CGA009] gi|192291661|ref|YP_001992266.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris TIE-1] gi|39649860|emb|CAE28382.1| NADH-ubiquinone dehydrogenase chain J [Rhodopseudomonas palustris CGA009] gi|192285410|gb|ACF01791.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodopseudomonas palustris TIE-1] Length = 212 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 133/206 (64%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M LFFYL++ +AI ++ +VV RNP++S LI FVNAAG+F+L+GAEF+AMI +V Sbjct: 1 MSMPVLFFYLYAGVAIAAAVMVVVARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG----SFFIGILAAELIVCASNFMVFS 116 VYVGAV V FLF+IMMLD+D + + GFL IG + ++ + V S Sbjct: 61 VYVGAVAVLFLFVIMMLDVDYS----QLREGFLEYLPFGLLIGFIFLAELLLLAGGWVIS 116 Query: 117 ---AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + S + +N E +G VLYT+Y + ++SG +LL++M+GAIVL LRH++ +KR Sbjct: 117 PTVTKAVTSPIPTGVSNTEALGLVLYTRYIHYFQVSGMVLLVAMVGAIVLTLRHKKKVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDI+ Q + + ++ + VK+G+G+ Sbjct: 177 QDIAAQNARSKETAMAIRHVKTGQGL 202 >gi|254501714|ref|ZP_05113865.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Labrenzia alexandrii DFL-11] gi|222437785|gb|EEE44464.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Labrenzia alexandrii DFL-11] Length = 204 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/209 (44%), Positives = 145/209 (69%), Gaps = 15/209 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++++LFFYLF+ + + S+F+V+ RNP+ SV LI AFVN+AGLF+LLGAE++A++ +V Sbjct: 1 MILKALFFYLFAGVTVASAFMVIAARNPVTSVLFLILAFVNSAGLFILLGAEYLALLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMV 114 VYVGAV V FLF++MMLD+D +E+ ++GFL +G IL EL++ +++ Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVEL-----RQGFLQYLPVGGLVGLILLVELLMGFGAWVI 115 Query: 115 F----SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + E + + + N+E +G VLYT+Y Y +++G ILL++MIGAIVL LRH+ + Sbjct: 116 LPELTANTVEPTPPLTEMTNIEALGSVLYTKYIYFFQVAGLILLVAMIGAIVLTLRHKPN 175 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGKGI 199 +KRQDI Q+ + ++ + KV++GKGI Sbjct: 176 VKRQDIPTQVGRTREAAVEVRKVETGKGI 204 >gi|118590028|ref|ZP_01547432.1| NADH dehydrogenase subunit J [Stappia aggregata IAM 12614] gi|118437525|gb|EAV44162.1| NADH dehydrogenase subunit J [Stappia aggregata IAM 12614] Length = 229 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/209 (44%), Positives = 143/209 (68%), Gaps = 15/209 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++++LFFYLF+ + + S+F+V+ RNP+ SV LI AFVN+AGLF+LLGAE++A++ +V Sbjct: 26 MILKALFFYLFAGVTLASAFMVIASRNPVTSVLFLILAFVNSAGLFILLGAEYLALLLVV 85 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFM- 113 VYVGAV V FLF++MMLD+D +E+ ++GFL +G IL EL++ ++ Sbjct: 86 VYVGAVAVLFLFVVMMLDVDFVEL-----RQGFLQYLPVGALVGVILLVELLMGLGAWVI 140 Query: 114 ---VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 V E + +N++ IG VLYT+Y Y +++G +LL++MIGAIVL LRH+ + Sbjct: 141 APGVLGHGAEPMPALSDVSNIQAIGSVLYTKYIYFFQVAGLVLLVAMIGAIVLTLRHKPN 200 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGKGI 199 +KRQ I Q+ N + SI + KV++GKGI Sbjct: 201 VKRQSIPDQVARNRETSIEVRKVETGKGI 229 >gi|83942658|ref|ZP_00955119.1| NADH dehydrogenase I, J subunit [Sulfitobacter sp. EE-36] gi|83953897|ref|ZP_00962618.1| NADH dehydrogenase subunit J [Sulfitobacter sp. NAS-14.1] gi|83841842|gb|EAP81011.1| NADH dehydrogenase subunit J [Sulfitobacter sp. NAS-14.1] gi|83846751|gb|EAP84627.1| NADH dehydrogenase I, J subunit [Sulfitobacter sp. EE-36] Length = 200 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 122/200 (61%), Gaps = 13/200 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ I V RNP++SV LI +F++AAGLF+LL AEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISVIAGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLNAEFVAMLLIIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGE 120 V FLF++MMLD+D + R + IG L++ M F +AEG Sbjct: 66 VLFLFVVMMLDVDFAELKAEMARYMPLALLIG-----LVILMQFVMAFGAWDANSAAEGL 120 Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 ++++ +N +G +LY QY ++SG ILL++MIGAIVL LRHR D+KRQ++ Q Sbjct: 121 RTQVITDEVHNTAALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRADVKRQNVVDQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPKLAMKLNDVKPGQGL 200 >gi|163746213|ref|ZP_02153572.1| NADH dehydrogenase subunit J [Oceanibulbus indolifex HEL-45] gi|161380958|gb|EDQ05368.1| NADH dehydrogenase subunit J [Oceanibulbus indolifex HEL-45] Length = 200 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ I V RNP++SV LI +F++AAGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 6 FYLFAISVITGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLGAEFVAMLLVIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V FLF++MMLD+D + R + I ++ V A SA E RL Sbjct: 66 VLFLFVVMMLDVDFAELKAEMARYMPLALLIALVILMQFVMAFGAWEQSAAAEGLRLNTI 125 Query: 128 GN---NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N E +G +LY +Y +++G ILL++MIGAIVL LRHR+D+KRQD+ Q+ +P Sbjct: 126 DPDRFNTEALGLLLYDRYFLLFQLAGLILLVAMIGAIVLTLRHRKDVKRQDVVAQMMRDP 185 Query: 185 DNSIVMVKVKSGKGI 199 ++ + VKSG+G+ Sbjct: 186 AKAMELRDVKSGQGL 200 >gi|154253656|ref|YP_001414480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Parvibaculum lavamentivorans DS-1] gi|154157606|gb|ABS64823.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Parvibaculum lavamentivorans DS-1] Length = 204 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 127/206 (61%), Gaps = 9/206 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ FYLF+ + + + F+V++ RNP++SV LI AF NAA LF+LLGAEF+A I ++ Sbjct: 1 MIGTAIAFYLFAGITVAAGFMVISARNPVHSVLFLILAFFNAAALFVLLGAEFIAFILVI 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAE------PRKKRGFLGSFFIGILAAELIVCASNFM 113 VYVGAV V FLF++MMLD+D +E+ E P + +L V A Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVELREGFLQYLPIGALIGIILLIELLLVLGGWVIAPG-- 118 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 S + ++ +N +G+V+YTQY Y + +G ILL++M+GAIVL LRH+ ++KR Sbjct: 119 AGSVAASPTPILTDVDNTRALGQVIYTQYVYLFQAAGLILLVAMVGAIVLTLRHKTNVKR 178 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q IS Q+ + + + KV+ G+G+ Sbjct: 179 QVISDQVARTRETGVELKKVEPGQGL 204 >gi|254459906|ref|ZP_05073322.1| NADH-quinone oxidoreductase chain j [Rhodobacterales bacterium HTCC2083] gi|206676495|gb|EDZ40982.1| NADH-quinone oxidoreductase chain j [Rhodobacteraceae bacterium HTCC2083] Length = 202 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 7/197 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 8 FYLFAICTFTGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL--- 124 V FLF++MMLDID AE + + + I L+ F V+ A + + L Sbjct: 68 VLFLFVVMMLDIDF--AELKAEMVKYMPLALLIGLVLLMQFTMAFGVWEASDQAAGLRGA 125 Query: 125 --VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 +N E +G +LY +Y ++SG ILL++MIGAIVL LRHR D+KRQD+ Q+ Sbjct: 126 VTPTDAHNTEALGLLLYDKYFLIFQLSGMILLVAMIGAIVLTLRHRTDVKRQDVMAQMHR 185 Query: 183 NPDNSIVMVKVKSGKGI 199 +P ++ + VK G+G+ Sbjct: 186 DPAKAMELKDVKPGQGL 202 >gi|83951756|ref|ZP_00960488.1| NADH dehydrogenase subunit J [Roseovarius nubinhibens ISM] gi|83836762|gb|EAP76059.1| NADH dehydrogenase subunit J [Roseovarius nubinhibens ISM] Length = 202 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 125/202 (61%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +L FYLF+ I+ V RNP++SV LI +F++AAGLF+LLGAEFVAM+ ++ Sbjct: 1 MTVFALAFYLFATCVIVGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLD+D + R + IG++ A F+ E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVLLMQFALAYGAWDFAEGAE 120 Query: 121 LSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 +R + VEN +G ++Y +Y ++SG ILL++M+GAI L LRHR+D+KRQ++ Sbjct: 121 AARGAVTPDGVENTAALGLLIYDKYFLLFQLSGLILLVAMVGAIALTLRHRQDVKRQNVL 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 181 AQMYRDPAKAMELRDVKPGQGL 202 >gi|159043873|ref|YP_001532667.1| NADH dehydrogenase subunit J [Dinoroseobacter shibae DFL 12] gi|157911633|gb|ABV93066.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dinoroseobacter shibae DFL 12] Length = 204 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/205 (41%), Positives = 125/205 (60%), Gaps = 7/205 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FYLF+ + + V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++ Sbjct: 1 MTVADITFYLFAITVVTAGLFVTLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D + + IGI L +L + N+ FS E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMASYIPMAALIGIVLLMQLAMVFGNW-TFSEEA 119 Query: 120 ELSR--LVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 R + N V+N +G ++Y Y + SG ILL++MIGAIVL LRHR IKRQ Sbjct: 120 LAQRGAVTPDLNEVQNTAALGLLIYDDYILLFQASGLILLVAMIGAIVLTLRHRVGIKRQ 179 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 ++ Q++ +P ++ + VK G+G+ Sbjct: 180 NVVAQMQRDPAKAMELKDVKPGQGL 204 >gi|298291837|ref|YP_003693776.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Starkeya novella DSM 506] gi|296928348|gb|ADH89157.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Starkeya novella DSM 506] Length = 201 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 136/206 (66%), Gaps = 12/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +LFFYLF+ +A+ S+F+V+ RNP++SV LI FVNA+GLF+L+GAE++AM+ +V Sbjct: 1 MSLAALFFYLFAGVAVASAFMVIASRNPVHSVLFLILTFVNASGLFILIGAEYLAMLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILA-----AELIVCASNFMV 114 VYVGAV V FLF++MMLD+D +E+ ++GFL +G+L AEL++ + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVEL-----RQGFLQYLPVGVLVGLVFLAELVLVLGTWTF 115 Query: 115 FSA-EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 G ++ +N IG+VLYT Y + + +G ILL++MIGAIVL LRH+ ++KR Sbjct: 116 GEGVTGAVASAAPGASNAVQIGRVLYTDYVFFFQAAGLILLVAMIGAIVLTLRHKENVKR 175 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q + Q +I +VKV SGKG+ Sbjct: 176 QSVPVQNARTKAMAIDVVKVPSGKGL 201 >gi|319761771|ref|YP_004125708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alicycliphilus denitrificans BC] gi|330826551|ref|YP_004389854.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alicycliphilus denitrificans K601] gi|317116332|gb|ADU98820.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alicycliphilus denitrificans BC] gi|329311923|gb|AEB86338.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alicycliphilus denitrificans K601] Length = 222 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/210 (39%), Positives = 131/210 (62%), Gaps = 16/210 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FFYLFS + + ++F V+T RNP+++V LI AF AAG++LLL AEF+A+ ++ Sbjct: 1 MDVKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAGVWLLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF----FIGILAA-EL-IVCASNFMV 114 VY+GAV+V FLF++MMLDI + +RGF F FIG L A E+ V + F Sbjct: 61 VYLGAVMVLFLFVVMMLDIRFDTV----RRGFWKHFPLAAFIGALVAFEMAAVLMTGFRG 116 Query: 115 FSAEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + LV +N + +G+++YT+Y YP+EI+ ILL++MI AI L LR R Sbjct: 117 VEEPKAVPALVNAAGQVLPYSNTQALGRLMYTEYLYPVEIAAVILLVAMISAIALTLRQR 176 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGKG 198 +D+K D + QL + + +V++K+ + + Sbjct: 177 KDVKAGDATAQLRARASDRLVVLKMPTTQA 206 >gi|148285164|ref|YP_001249254.1| NADH dehydrogenase subunit J [Orientia tsutsugamushi str. Boryong] gi|146740603|emb|CAM81257.1| NADH dehydrogenase I chain J [Orientia tsutsugamushi str. Boryong] Length = 202 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/203 (41%), Positives = 125/203 (61%), Gaps = 17/203 (8%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LFFYLFS +A++ S V+T +NP+Y+ LIF F N +GL +LLGAEF+A + ++VY GA Sbjct: 2 LFFYLFSVLALLGSIGVITSKNPVYAALWLIFVFCNTSGLLILLGAEFLAFLLVIVYAGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--------AELIVCASNFM-VFS 116 V + FLF++MML+I + K R L I+A +++C SN+ + Sbjct: 62 VAILFLFVVMMLNIKSDNLVLVKTRTILNIPIYVIIAFIFIIDLSIIIVMCFSNYCPIHY 121 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 E L +++ IG+VLYT+YA ++SG ILL++MIG +VL +R R +KRQD Sbjct: 122 EENNL--------DIKAIGRVLYTEYALQFQLSGIILLIAMIGCVVLTVRKRSGVKRQDH 173 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 Q+ N ++SI +VKV+ KGI Sbjct: 174 YSQINRNRNSSIQVVKVEVNKGI 196 >gi|83311877|ref|YP_422141.1| NADH:ubiquinone oxidoreductase subunit 6 [Magnetospirillum magneticum AMB-1] gi|82946718|dbj|BAE51582.1| NADH:ubiquinone oxidoreductase subunit 6 [Magnetospirillum magneticum AMB-1] Length = 202 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/205 (41%), Positives = 131/205 (63%), Gaps = 16/205 (7%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY+F+ +A+ S +V++ RNP++SV LI AF NAAGLFLLLGAEF+AM+ ++VYVG Sbjct: 4 ALIFYMFAAIAVASGVMVISSRNPVHSVLWLILAFFNAAGLFLLLGAEFLAMVLVIVYVG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVFSAEG 119 AV V FLF++MMLDI++ K GFL G +L EL+ + F+ + Sbjct: 64 AVAVLFLFVVMMLDINMV----EMKEGFLQYLPTGALIGLVLLVELLAMFGGW-AFAPDV 118 Query: 120 EL-----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 E + + + +N +GK++YT Y Y + SG +LL++MIG I+L R R +++Q Sbjct: 119 EAMIKAPTPTLDQASNTVALGKLIYTNYVYLFQASGLVLLVAMIGTILLTHRKRTGVRKQ 178 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 I++Q+ + D S+ + KV+SG+GI Sbjct: 179 VIAEQVNRSRD-SVELKKVQSGRGI 202 >gi|91977346|ref|YP_570005.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisB5] gi|91683802|gb|ABE40104.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] Length = 212 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 129/206 (62%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M LFFYL++ AI ++ +VV RNP++S LI FVNAAG+F+L+GAEF+AMI +V Sbjct: 1 MSMPVLFFYLYAGAAIAAAVMVVVARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-------FM 113 VYVGAV V FLF+IMMLD+D R + GFL G+L + + Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFS----RLREGFLEYLPFGLLIGAIFLAELLLLAGGWVIT 116 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + + +N E +G VLYT+Y + +ISG ILL++MIGAIVL LRH++ +KR Sbjct: 117 PTITKTITAPIPTNVSNTEALGLVLYTRYIHYFQISGVILLVAMIGAIVLTLRHKKSVKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q+I++Q + ++ + +VK G+G+ Sbjct: 177 QNINEQNARTKEAAMAIRQVKPGQGL 202 >gi|146278032|ref|YP_001168191.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides ATCC 17025] gi|145556273|gb|ABP70886.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides ATCC 17025] Length = 204 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 126/204 (61%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + L FY F+ A+ ++ +VVT RN +++V LI F+++AG+F+LLGAEFVAM+ ++ Sbjct: 1 MSVADLAFYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AE 118 VYVGAV V FLF++MMLD+D E + R + IGI+ + V + A Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFEALKSEMARYMPVAALIGIVILLQLSMGIGAWVTAEGAP 120 Query: 119 GELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G N +EN +G ++Y +Y Y + +G ILL++M+GAI+L LR RRD+KRQ+ Sbjct: 121 GLRQAPTPDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q+ +P ++ + VK G+G+ Sbjct: 181 VLAQMWRDPAEAMELKDVKPGQGL 204 >gi|315499799|ref|YP_004088602.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Asticcacaulis excentricus CB 48] gi|315417811|gb|ADU14451.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Asticcacaulis excentricus CB 48] Length = 202 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 92/204 (45%), Positives = 135/204 (66%), Gaps = 11/204 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ FY+ + + ++S LV+T RNP++SV LI AF +AAGLF+L+GAEF+AM+ +VVY Sbjct: 1 MLAIAFYILAAVTVVSGALVITARNPVHSVLFLILAFFSAAGLFVLMGAEFLAMLLVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFMVFSA 117 VGAV V FLF++MMLD+D + ++GF IG++ ELI+ +S A Sbjct: 61 VGAVAVLFLFVVMMLDVDF----TKLRQGFANYLPIGMVVGILLLIELIMISSAVAQRGA 116 Query: 118 EGELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 S V+ +N+E IG+VLYT Y Y + SG +LL++MIGAIVL L+HR +KRQD Sbjct: 117 AAGQSPQVYGAEMSNIEAIGRVLYTDYVYVFQASGLVLLVAMIGAIVLTLQHRTYVKRQD 176 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I Q+ +++ +VKVK+G+GI Sbjct: 177 IHTQVTRRRKDAVAIVKVKTGEGI 200 >gi|16126184|ref|NP_420748.1| NADH dehydrogenase subunit J [Caulobacter crescentus CB15] gi|13423398|gb|AAK23916.1| NADH dehydrogenase I, J subunit [Caulobacter crescentus CB15] Length = 205 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 95/207 (45%), Positives = 137/207 (66%), Gaps = 12/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYL +F+ I + LVV+ RNP++SV LI AF +AAGLF+LLGAEF+AM+ +V Sbjct: 1 MPVQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL-----GSFFIGILAAELIV--CASNFM 113 VYVGAV V FLF++MMLD+D AE R+ GF+ G ++A E+++ A Sbjct: 61 VYVGAVAVLFLFVVMMLDVDF--AELRQ--GFVQYLPFGGLIALVIAIEMVMVVAAVATN 116 Query: 114 VFSAEGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +A+ L G N E IG+VLYT Y + +++G +LL++MIGAIVL LRH+ +K Sbjct: 117 GAAAKNPLPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKPGVK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQDI KQ+ P + +V++K G+GI Sbjct: 177 RQDIGKQVARTPKTGMELVQIKPGEGI 203 >gi|221234956|ref|YP_002517392.1| NADH dehydrogenase subunit J [Caulobacter crescentus NA1000] gi|220964128|gb|ACL95484.1| NADH-quinone oxidoreductase chain J [Caulobacter crescentus NA1000] Length = 217 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/207 (45%), Positives = 137/207 (66%), Gaps = 12/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYL +F+ I + LVV+ RNP++SV LI AF +AAGLF+LLGAEF+AM+ +V Sbjct: 13 MPVQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLVV 72 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL-----GSFFIGILAAELIV--CASNFM 113 VYVGAV V FLF++MMLD+D AE R+ GF+ G ++A E+++ A Sbjct: 73 VYVGAVAVLFLFVVMMLDVDF--AELRQ--GFVQYLPFGGLIALVIAIEMVMVVAAVATN 128 Query: 114 VFSAEGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +A+ L G N E IG+VLYT Y + +++G +LL++MIGAIVL LRH+ +K Sbjct: 129 GAAAKNPLPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKPGVK 188 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 RQDI KQ+ P + +V++K G+GI Sbjct: 189 RQDIGKQVARTPKTGMELVQIKPGEGI 215 >gi|85708743|ref|ZP_01039809.1| NADH dehydrogenase subunit J [Erythrobacter sp. NAP1] gi|85690277|gb|EAQ30280.1| NADH dehydrogenase subunit J [Erythrobacter sp. NAP1] Length = 207 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/212 (41%), Positives = 130/212 (61%), Gaps = 23/212 (10%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q L FYLF+ + I S+ +V+ RNP++SV LI +F NAAGL +L+GAEF+AM+ ++VY Sbjct: 2 IQVLAFYLFAGLVIASAVMVIMARNPVHSVLWLILSFFNAAGLMVLVGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF------- 115 VGAV V FLF++MMLDID + GF+ +F +GI A LI+ A F+ Sbjct: 62 VGAVAVLFLFVVMMLDIDFAA----MRAGFIKNFPLGI-AVALILLAELFLGLGAYGAGG 116 Query: 116 ----SAEGELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + +G + +G+ N++ IG +LY +Y EI+G ILL++MIGAIVL R + Sbjct: 117 IELGTPDGTAAE---RGDVSNIQAIGALLYGRYIVLFEIAGIILLVAMIGAIVLTHREAK 173 Query: 170 D--IKRQDISKQLESNPDNSIVMVKVKSGKGI 199 RQDI KQ+ P+ + VM + GKG+ Sbjct: 174 PGARGRQDIGKQIRRRPEEATVMKNPEYGKGV 205 >gi|326387452|ref|ZP_08209061.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Novosphingobium nitrogenifigens DSM 19370] gi|326208108|gb|EGD58916.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Novosphingobium nitrogenifigens DSM 19370] Length = 205 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 130/206 (63%), Gaps = 13/206 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q+ FYLF+ + I+S + + RNP++SV LI AF NAAGL +L GAEF+AM+ ++VY Sbjct: 2 IQAFAFYLFATLMIVSGAVTILARNPVHSVLWLILAFFNAAGLMVLAGAEFIAMLLIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFM 113 VGAV V FLF++MMLDID AE R GF+ + +G++ A ++V ++ M Sbjct: 62 VGAVAVLFLFVVMMLDIDF--AELRA--GFIRNAPLGVILAVVLFVELFVGILVRSAGDM 117 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 G + + +N IG +LYT+Y + E +GFILL++MIGAIVL R R ++ Sbjct: 118 AIGTAGAATAVPAGLSNTAAIGALLYTRYLFVFEAAGFILLVAMIGAIVLTHRQRSGVRG 177 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q+I+KQ+ P+ + + ++ + GKG+ Sbjct: 178 QNIAKQIARRPEEATINLQPEVGKGV 203 >gi|120609959|ref|YP_969637.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Acidovorax citrulli AAC00-1] gi|120588423|gb|ABM31863.1| NADH dehydrogenase subunit J [Acidovorax citrulli AAC00-1] Length = 222 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/199 (41%), Positives = 123/199 (61%), Gaps = 8/199 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFYLFS + + ++F V+T RNP+++V LI AF AA ++LLL AEF+A+ L+VY+GAV Sbjct: 7 FFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALLLVYLGAV 66 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-AAEL-IVCASNFMVFSAEGELSRL 124 +V FLF++MMLDI I+ R F + FIG L A E+ V F ++ + Sbjct: 67 MVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEPKAVAAM 126 Query: 125 VFKGNNV------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 V NV + +GK+LYT+Y YP+EI+ ILL++MI AI L LR R+D K +S+ Sbjct: 127 VDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTKVTKVSE 186 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ + + +VKV + + Sbjct: 187 QVRVRAADRVELVKVAATQ 205 >gi|84502625|ref|ZP_01000744.1| NADH dehydrogenase subunit J [Oceanicola batsensis HTCC2597] gi|84389020|gb|EAQ01818.1| NADH dehydrogenase subunit J [Oceanicola batsensis HTCC2597] Length = 201 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 116/191 (60%), Gaps = 24/191 (12%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV V FLF++MMLDID Sbjct: 22 TVIARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGAVAVLFLFVVMMLDIDF 81 Query: 82 EVAEPRKKRGFLGSFFIGIL-------------AAELIVCASNFMVFSAEGELSRLVFKG 128 + + + IG++ A+++ ASN + EGE Sbjct: 82 AALKAEMAKYMPLALLIGVILLMQFGLAYGSWEASDM--AASNRLAAMPEGE-------- 131 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188 N +G ++Y QY +++G ILL++MIGAIVL LRHR DIKRQ++ Q+ +P S+ Sbjct: 132 -NTAGLGLLIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRTDIKRQNVLAQMWRDPAKSM 190 Query: 189 VMVKVKSGKGI 199 + VK G+G+ Sbjct: 191 ELKDVKPGQGL 201 >gi|319943357|ref|ZP_08017639.1| NADH-quinone oxidoreductase subunit J [Lautropia mirabilis ATCC 51599] gi|319743172|gb|EFV95577.1| NADH-quinone oxidoreductase subunit J [Lautropia mirabilis ATCC 51599] Length = 254 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/196 (37%), Positives = 128/196 (65%), Gaps = 9/196 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S+ F+LF+ + + ++ V+T RNP++S L+ FV++A ++LL+ AEF+A++ ++VYVG Sbjct: 5 SVLFFLFALVTVFAATRVITARNPVHSALFLVLTFVSSAAIWLLMKAEFLAIVLVLVYVG 64 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-----AEG 119 AV+V FLF++MMLDID++ + GF S +G+ A +IV + ++++ E Sbjct: 65 AVMVLFLFVVMMLDIDLD----NLRVGFWRSLPVGLFVAAIIVVELSLVLWAHFGGVQEA 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 +L + +N + +G++LYT Y YPLEI+G ILL++M+ AI L LR R+D K Q+ S+Q Sbjct: 121 DLVQPAADYDNAKALGELLYTGYIYPLEIAGMILLVAMVAAIALTLRRRKDRKSQNPSQQ 180 Query: 180 LESNPDNSIVMVKVKS 195 + + + +V + + Sbjct: 181 VRVRAADRVRLVSMSA 196 >gi|326316108|ref|YP_004233780.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372944|gb|ADX45213.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 222 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/199 (41%), Positives = 123/199 (61%), Gaps = 8/199 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFYLFS + + ++F V+T RNP+++V LI AF AA ++LLL AEF+A+ ++VY+GAV Sbjct: 7 FFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALVLVYLGAV 66 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-AAEL-IVCASNFMVFSAEGELSRL 124 +V FLF++MMLDI I+ R F + FIG L A E+ V F ++ + Sbjct: 67 MVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEPKAVAAM 126 Query: 125 VFKGNNV------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 V NV + +GK+LYT+Y YP+EI+ ILL++MI AI L LR R+D K +S+ Sbjct: 127 VDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTKVTKVSE 186 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ + + +VKV + + Sbjct: 187 QVRVRAADRVALVKVAATQ 205 >gi|148555901|ref|YP_001263483.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas wittichii RW1] gi|148501091|gb|ABQ69345.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas wittichii RW1] Length = 203 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/204 (40%), Positives = 126/204 (61%), Gaps = 11/204 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++ FYLF+ + + S L + RNP++SV LI AF NAAGL +L+GAEF+AM+ ++VY Sbjct: 2 IQTIAFYLFAALVVASGTLTILARNPVHSVLWLILAFFNAAGLMILVGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA 117 VGAV V FLF++MMLDID AE R GF G + +LAAE+I + Sbjct: 62 VGAVAVLFLFVVMMLDIDF--AELRA--GFAQYLPFGILLVLVLAAEMIFAIGAWKAGGI 117 Query: 118 E--GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ++ + N+E IG ++YT+Y Y E +G ILL++++GAIVL R R +K Q+ Sbjct: 118 DMGARIAPTPSEVPNIEAIGTLIYTRYLYIFEGAGLILLVALVGAIVLTHRTRGGVKTQN 177 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 ++ Q P+++ VK G+G+ Sbjct: 178 VTAQNMRRPEDATRNVKPAVGQGV 201 >gi|197105258|ref|YP_002130635.1| NADH dehydrogenase I, J subunit [Phenylobacterium zucineum HLK1] gi|196478678|gb|ACG78206.1| NADH dehydrogenase I, J subunit [Phenylobacterium zucineum HLK1] Length = 207 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/209 (42%), Positives = 132/209 (63%), Gaps = 14/209 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYL + + + + F VV+ RNP++SV LI AF +AAGLF+L+GAEF+AM+ +V Sbjct: 1 MALQAIAFYLMAAVTVSAGFGVVSARNPVHSVLWLILAFFSAAGLFVLMGAEFLAMLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVF 115 VYVGAV V FLF++MMLD+D ++GF +G +LA E+IV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFTA----LRQGFARYMPVGLLIAAVLAVEMIVVSTTVATR 116 Query: 116 SA--EGELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 A E +G N E IG+VLYT Y Y + +G +LL++MIGAIVL LRH+ Sbjct: 117 GAARANETPMAAGQGADVTNAEAIGRVLYTDYVYFFQAAGLVLLVAMIGAIVLTLRHKPG 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGKGI 199 +KRQ ++ Q+ +P + +V +K G+G+ Sbjct: 177 VKRQLVADQVLRSPKTGMRVVSLKPGEGV 205 >gi|222110095|ref|YP_002552359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax ebreus TPSY] gi|221729539|gb|ACM32359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax ebreus TPSY] Length = 221 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 130/208 (62%), Gaps = 24/208 (11%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+T RNP+++V LI AF AAG++ LL AEF+A+ ++ Sbjct: 1 MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAGVWFLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF----FIGILAA-EL-IVCASNF-- 112 VY+GAV+V FLF++MMLDI I+ +RGF F FIG L A E+ V + F Sbjct: 61 VYLGAVMVLFLFVVMMLDIRIDTV----RRGFWKHFPLAAFIGALVAFEMAAVLMTGFRG 116 Query: 113 --------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 ++ +A G+ V +N + +GK+LYT+Y YP+E++ ILL++MI AI L Sbjct: 117 IEEPKAVEVLVNAAGQ----VVPYSNTKALGKLLYTEYLYPVEVAAVILLVAMIAAIALT 172 Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVK 192 LR R+D K D S+Q+ + +VMV+ Sbjct: 173 LRQRKDSKAIDPSEQVRVRARDRLVMVQ 200 >gi|84686446|ref|ZP_01014340.1| NADH dehydrogenase subunit J [Maritimibacter alkaliphilus HTCC2654] gi|84665629|gb|EAQ12105.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2654] Length = 204 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 122/205 (59%), Gaps = 7/205 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY F+ ++ V RNP++SV LI AF+ +AGLF++LGAEF+AM+ ++ Sbjct: 1 MTVADFAFYAFAVTTLVGGLFTVLARNPVHSVLWLIMAFIGSAGLFVVLGAEFLAMLLMI 60 Query: 61 VYVGAVIVFFLFIIMMLDID---IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVGAV V FLF++MMLD+D ++ + L + ++ +I F A Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAGMAKYMPLALLIAVVLLMQMGMIYGTWQF-ADGA 119 Query: 118 EGELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 E + VEN +G+++Y Y ++SG +LL++MIGAIVL LRHR+DIKRQ Sbjct: 120 EAARRAVTPDMTEVENTAALGQLIYDDYFLLFQLSGLVLLVAMIGAIVLTLRHRKDIKRQ 179 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 D+ Q+ +P ++ +V VK G+G+ Sbjct: 180 DVLAQMYRDPAKALELVDVKPGQGL 204 >gi|121998535|ref|YP_001003322.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Halorhodospira halophila SL1] gi|121589940|gb|ABM62520.1| NADH dehydrogenase subunit J [Halorhodospira halophila SL1] Length = 203 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 76/200 (38%), Positives = 127/200 (63%), Gaps = 9/200 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+F+ + + ++ +V++VRNP+++ L+ AF NAA +++L GAEF+ + ++VY Sbjct: 1 MEQVIFYIFAGVLLFAATMVISVRNPVHAALFLVLAFFNAAVIWVLAGAEFLGIALVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA 117 VGAV+V FLF++MMLDI+I P ++ GF +G+ ++AA+L+ + Sbjct: 61 VGAVMVLFLFVLMMLDINI---APMRE-GFTRYLPVGALVAVLMAAQLVAVIVSERADLI 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 G + NN++ IG VLYT Y YP EI+ ILLL+++ AI L LR R +QD+S Sbjct: 117 SGTIPEPAADVNNIQAIGGVLYTVYVYPFEIAAVILLLAIVAAITLTLRRREGTHKQDVS 176 Query: 178 KQLESNPDNSIVMVKVKSGK 197 +QL D+ + +V++KS + Sbjct: 177 RQLSVKKDDRLRLVRMKSSR 196 >gi|77463083|ref|YP_352587.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides 2.4.1] gi|126461955|ref|YP_001043069.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides ATCC 17029] gi|332557956|ref|ZP_08412278.1| NADH:ubiquinone oxidoreductase subunit J [Rhodobacter sphaeroides WS8N] gi|77387501|gb|ABA78686.1| NADH dehydrogenase I-ubiquinone oxidoreductase subunit 6 (chain J) [Rhodobacter sphaeroides 2.4.1] gi|126103619|gb|ABN76297.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029] gi|332275668|gb|EGJ20983.1| NADH:ubiquinone oxidoreductase subunit J [Rhodobacter sphaeroides WS8N] Length = 204 Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 126/197 (63%), Gaps = 5/197 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F+ A+ ++ +VVT RN +++V LI F+++AG+F+LLGAEFVAM+ ++VYVGAV Sbjct: 8 FYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLVIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126 V FLF++MMLD+D E + R + +GI + +L + ++ + + V Sbjct: 68 VLFLFVVMMLDVDFEALKSEVVRYMPVAALMGIVILLQLSMGIGAWVTADGAPAMRQAVT 127 Query: 127 KG-NNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 N +EN +G ++Y +Y Y + +G ILL++M+GAI+L LR RRD+KRQ++ Q+ Sbjct: 128 PDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQNVLAQMWR 187 Query: 183 NPDNSIVMVKVKSGKGI 199 +P ++ + VK G+G+ Sbjct: 188 DPAKAMELKDVKPGQGL 204 >gi|221638939|ref|YP_002525201.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides KD131] gi|221159720|gb|ACM00700.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131] Length = 199 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 126/197 (63%), Gaps = 5/197 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F+ A+ ++ +VVT RN +++V LI F+++AG+F+LLGAEFVAM+ ++VYVGAV Sbjct: 3 FYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLVIVYVGAVA 62 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126 V FLF++MMLD+D E + R + +GI + +L + ++ + + V Sbjct: 63 VLFLFVVMMLDVDFEALKSEVVRYMPVAALMGIVILLQLSMGIGAWVTADGAPAMRQAVT 122 Query: 127 KG-NNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 N +EN +G ++Y +Y Y + +G ILL++M+GAI+L LR RRD+KRQ++ Q+ Sbjct: 123 PDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQNVLAQMWR 182 Query: 183 NPDNSIVMVKVKSGKGI 199 +P ++ + VK G+G+ Sbjct: 183 DPAKAMELKDVKPGQGL 199 >gi|262277292|ref|ZP_06055085.1| NADH-quinone oxidoreductase, j subunit [alpha proteobacterium HIMB114] gi|262224395|gb|EEY74854.1| NADH-quinone oxidoreductase, j subunit [alpha proteobacterium HIMB114] Length = 206 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 136/206 (66%), Gaps = 11/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ +L FYLFSF+AI SS V++ +N +++VF LI FV+ + LF+++GAE++ M+TL+ Sbjct: 1 MLAHALVFYLFSFIAISSSLAVISSKNTVHAVFFLILDFVSISCLFIMMGAEYLGMLTLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MML+++ + + GFL G+L +I+ M+ + + + Sbjct: 61 VYVGAVAVLFLFVVMMLNVNFK----DLRTGFLSYLPFGLLIGIVIIIELGMMIGTWKYK 116 Query: 121 LS-------RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 S ++ K +N E +G VLYT + + +ISG ILL++MIGAI+L R + ++KR Sbjct: 117 DSFIKTSEIQISSKVSNTEALGNVLYTDFIHYFQISGIILLVAMIGAILLTFRQKENLKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 QDI+KQ+ D+ +++ +V+S KG+ Sbjct: 177 QDITKQVSRERDDGVLLEEVESFKGV 202 >gi|121593386|ref|YP_985282.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Acidovorax sp. JS42] gi|120605466|gb|ABM41206.1| NADH dehydrogenase subunit J [Acidovorax sp. JS42] Length = 222 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 77/199 (38%), Positives = 122/199 (61%), Gaps = 17/199 (8%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFYLF+ + + ++F V+T RNP+++V LI AF AAG++LLL AEF+A+ ++VY+GAV Sbjct: 7 FFYLFAVVLLYAAFRVITARNPVHAVLHLILAFSQAAGIWLLLKAEFLAITLVLVYLGAV 66 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI------VCASNFMVFSAEGE 120 +V FLF++MMLDI I+ ++GF F + L ++ V + F Sbjct: 67 MVLFLFVVMMLDIRIDAV----RKGFWKHFPVAALIGAIVTFEMAAVLMTGFRGMEEPKA 122 Query: 121 LSRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++ +V +N + +GK+LYT+Y YP+E++ ILL++MI AI L LR R+D K Sbjct: 123 IADVVVNAAGQAVPYSNTKALGKLLYTEYLYPVEVAAVILLVAMIAAIALTLRQRKDSKA 182 Query: 174 QDISKQLESNPDNSIVMVK 192 D S+Q+ + +VMV+ Sbjct: 183 IDPSEQVRVRARDRLVMVQ 201 >gi|218200865|gb|EEC83292.1| hypothetical protein OsI_28652 [Oryza sativa Indica Group] Length = 673 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 126/205 (61%), Gaps = 8/205 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+T RNP+++V LI AF AA ++LLL AEF+A+ ++ Sbjct: 452 MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALVL 511 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-AAEL-IVCASNFMVFSAE 118 VY+GAV+V FLF++MMLDI I+ R F + FIG L A E+ V F Sbjct: 512 VYLGAVMVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEP 571 Query: 119 GELSRLVFKGNNV------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 ++ +V NV + +GK+LYT+Y YP+EI+ ILL++MI AI L LR R+D K Sbjct: 572 KAVAAMVDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTK 631 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 +S+Q+ + + +VKV + + Sbjct: 632 VTKVSEQVRVRAADRVALVKVAATQ 656 >gi|149184626|ref|ZP_01862944.1| NADH dehydrogenase I, J subunit [Erythrobacter sp. SD-21] gi|148831946|gb|EDL50379.1| NADH dehydrogenase I, J subunit [Erythrobacter sp. SD-21] Length = 206 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 14/207 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++ FY+F+ + I S+ +V+T RNP++SV LI AF NAAGL +L+GAEF+AM+ ++VY Sbjct: 2 IQTIAFYMFAVLVIASAVMVITARNPVHSVLWLILAFFNAAGLMVLVGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS---------NFM 113 VGAV V FLF++MMLDIDI + GF+ + +G++ A +++ M Sbjct: 62 VGAVAVLFLFVVMMLDIDIAA----MRAGFVKNAPLGLVIALVLLAELVLGVGAYRVGVM 117 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK- 172 +N IG +LYT+Y + E +G ILL++MIGAIVL R + + Sbjct: 118 ELGTPMASEAPAMMESNTGAIGALLYTKYLFLFEAAGIILLVAMIGAIVLTHRPPKTTRG 177 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 QDI KQ NPD + VM + G+G+ Sbjct: 178 HQDIGKQNRRNPDEATVMKQPIVGEGV 204 >gi|241763297|ref|ZP_04761354.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax delafieldii 2AN] gi|241367572|gb|EER61859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax delafieldii 2AN] Length = 222 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/209 (39%), Positives = 128/209 (61%), Gaps = 24/209 (11%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+T RNP+++V LI AF AA ++LLL AEF+A++ ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF----FIG-ILAAELIVC------- 108 VY+GAV+V FLF++MMLDI I+ ++GF F FIG ++A E+ Sbjct: 61 VYLGAVMVLFLFVVMMLDIHIDTI----RKGFWKHFPLAAFIGAMIALEMAAVLMGGFRG 116 Query: 109 ----ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 + +V A G+ V +N + +GK+LYT+Y YP+EI+ ILL++MI AI L Sbjct: 117 LDEPKAAAVVLDAAGQ----VVPYSNAKALGKLLYTEYLYPVEIAAVILLVAMIAAIALT 172 Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKV 193 LR R+D K D S Q+ + + +VK+ Sbjct: 173 LRQRKDTKAIDPSSQIRVRAKDRLQVVKL 201 >gi|319898891|ref|YP_004158984.1| NADH dehydrogenase I chain J [Bartonella clarridgeiae 73] gi|319402855|emb|CBI76406.1| NADH dehydrogenase I chain J [Bartonella clarridgeiae 73] Length = 206 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 132/199 (66%), Gaps = 7/199 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFY+F+F+ +IS+ +VV+ RNP++SV LI AF NAA LFLL GAEF+ +I LVVYVGAV Sbjct: 9 FFYIFAFIMLISAVIVVSARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAV 68 Query: 67 IVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL---- 121 V FLF++MMLD+D E+ K +G+F I+A ELI N FS E+ Sbjct: 69 AVLFLFVVMMLDVDFAELKSGALKYAPIGAFIGVIIAIELIFVFINNR-FSPISEIHVTQ 127 Query: 122 -SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + N + +G +LYT Y + EISG ILL++MIGAI+L LRHR +KRQ ++ Q+ Sbjct: 128 PTSDSTQRTNTQALGDILYTDYVFYFEISGLILLVAMIGAIILTLRHRSGVKRQSVAVQV 187 Query: 181 ESNPDNSIVMVKVKSGKGI 199 +N+I + KV+SGKGI Sbjct: 188 ARTAENAIEIKKVESGKGI 206 >gi|85374151|ref|YP_458213.1| NADH dehydrogenase I, J subunit [Erythrobacter litoralis HTCC2594] gi|84787234|gb|ABC63416.1| NADH dehydrogenase I, J subunit [Erythrobacter litoralis HTCC2594] Length = 206 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/209 (41%), Positives = 133/209 (63%), Gaps = 16/209 (7%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++Q+ FYLF+ + I S L + RNP++SV LI AF NAAGL +LLGAEF+AM+ ++V Sbjct: 1 MIQAFAFYLFAALMIASGVLTIMSRNPVHSVLWLILAFFNAAGLMVLLGAEFIAMLLVIV 60 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC----------ASN 111 YVGAV V FLF++MMLDID AE R GF+ +F +GI A +++ A Sbjct: 61 YVGAVAVLFLFVVMMLDIDF--AELRA--GFIKNFPLGIAIALVLLAELVLGIGAYRAGI 116 Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + + +G + LV + N+E++G ++Y +Y + E +G ILL++MIGAIVL R ++ Sbjct: 117 VELGTPDGSAAPLVGE-TNIESLGALMYGKYLFLFEGAGLILLVAMIGAIVLTHRDLKNT 175 Query: 172 K-RQDISKQLESNPDNSIVMVKVKSGKGI 199 + Q+I KQ+ P+ + VM + + GKG+ Sbjct: 176 RGHQNIGKQVSRRPEEATVMKQPEIGKGV 204 >gi|154248543|ref|YP_001419501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xanthobacter autotrophicus Py2] gi|154162628|gb|ABS69844.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xanthobacter autotrophicus Py2] Length = 204 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/194 (46%), Positives = 131/194 (67%), Gaps = 15/194 (7%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 + S+F+V++ RNP+ SV LI AFVNAAGLF+L+GAEF+A+I +VVYVGAV V FLF++M Sbjct: 16 VASAFMVISSRNPVQSVLFLILAFVNAAGLFILIGAEFLALILVVVYVGAVAVLFLFVVM 75 Query: 76 MLDID-IEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFM----VFSAEGELSRLV 125 MLD+D +E+ ++GFL +G I AEL++ A ++ V SA Sbjct: 76 MLDVDFVEL-----RQGFLQYLPVGLVIGLIFLAELVLVAGAWVMGPGVASAVKSAPPSA 130 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 NV+ IG+VLYT Y Y + +GF+LL++MIGAIVL LRH+ ++KRQ+IS Q+ Sbjct: 131 GDVGNVQAIGQVLYTDYIYFFQAAGFVLLVAMIGAIVLTLRHKVNVKRQNISAQVARTAK 190 Query: 186 NSIVMVKVKSGKGI 199 ++ +VKV+ G+G+ Sbjct: 191 TAMDVVKVRPGQGL 204 >gi|221068603|ref|ZP_03544708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Comamonas testosteroni KF-1] gi|220713626|gb|EED68994.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Comamonas testosteroni KF-1] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/210 (39%), Positives = 123/210 (58%), Gaps = 17/210 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F VVT RNP+++V +LI AF AA ++LLL AEF+ + ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY+GAV+V FLF++MMLDI I+ +RGF F L LI ++ G+ Sbjct: 61 VYLGAVMVLFLFVVMMLDIRIDA----MRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGD 116 Query: 121 LSRLVFKG-------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + G +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR Sbjct: 117 VEDAKAVGTTMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRK 176 Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R+D K + + Q+ + I +VKV S K Sbjct: 177 RKDSKAMNPADQIRVRASDRIKLVKVDSTK 206 >gi|323138154|ref|ZP_08073227.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocystis sp. ATCC 49242] gi|322396616|gb|EFX99144.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocystis sp. ATCC 49242] Length = 200 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/200 (43%), Positives = 127/200 (63%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++FFY+F+ + I S+ +V+ RNP++SV LI AF N AGLFLL GAEF+AMI +VVY Sbjct: 1 MAAVFFYIFATIMIASACVVIFARNPVHSVLFLILAFCNGAGLFLLAGAEFLAMILIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFM--VFSAEG 119 VGAV V FLF++MMLD+D E+ + K +G+ ++ AEL + A + ++ Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKQGFNKYLPVGAAVGVVVLAELGMVAIGWQSAPSASSA 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +V +N +G+VLYT+Y + S +LL +MIGAIVL L H+ ++KRQ I++Q Sbjct: 121 AATPIVANVSNTAALGQVLYTKYVIFFQASALVLLTAMIGAIVLTLHHKPNVKRQKIAEQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 N DN I + KV G+ Sbjct: 181 NARNRDNVIEIKKVPFRTGV 200 >gi|319408588|emb|CBI82243.1| NADH dehydrogenase I chain J [Bartonella schoenbuchensis R1] Length = 190 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 123/193 (63%), Gaps = 13/193 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++S+ VV RNP++SV LI AF NAA LF+LLGAEF+ +I LVVYVGAV V FLF++M Sbjct: 2 LVSAVTVVAARNPVHSVLFLILAFFNAAALFVLLGAEFLGLILLVVYVGAVAVLFLFVVM 61 Query: 76 MLDIDIEVAEPRKKRGFL-----GSFFIGILAAELIVC--ASNF--MVFSAEGELSRLVF 126 MLD+D K G L G+F ++ ELI +S+F ++ S + + Sbjct: 62 MLDVDFA----ELKSGVLRYIPVGAFIGVVIVVELISVFISSHFSPVLRSYVTQPMPDLA 117 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186 + N + +G +LYT Y + +I+G ILL++MIGAIVL LRH+ +KRQ I+ Q+ + Sbjct: 118 QRTNTQALGDILYTDYIFYFQIAGMILLVAMIGAIVLTLRHKSGVKRQSIAVQVARTAKS 177 Query: 187 SIVMVKVKSGKGI 199 +I + +V+SGKGI Sbjct: 178 AIEIKQVESGKGI 190 >gi|299530751|ref|ZP_07044166.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas testosteroni S44] gi|298721267|gb|EFI62209.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas testosteroni S44] Length = 226 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/210 (39%), Positives = 123/210 (58%), Gaps = 17/210 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F VVT RNP+++V +LI AF AA ++LLL AEF+ + ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY+GAV+V FLF++MMLDI I+ +RGF F L LI ++ G+ Sbjct: 61 VYLGAVMVLFLFVVMMLDIRID----SMRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGD 116 Query: 121 LSRLVFKG-------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + G +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR Sbjct: 117 VEDAKAVGATMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRK 176 Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R+D K + + Q+ + I +VKV S K Sbjct: 177 RKDSKAMNPADQIRVRASDRIKLVKVDSTK 206 >gi|264677207|ref|YP_003277113.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas testosteroni CNB-2] gi|262207719|gb|ACY31817.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas testosteroni CNB-2] Length = 226 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/210 (39%), Positives = 123/210 (58%), Gaps = 17/210 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F VVT RNP+++V +LI AF AA ++LLL AEF+ + ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY+GAV+V FLF++MMLDI I+ +RGF F L LI ++ G+ Sbjct: 61 VYLGAVMVLFLFVVMMLDIRID----SMRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGD 116 Query: 121 LSRLVFKG-------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + G +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR Sbjct: 117 VEDAKAVGATMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRK 176 Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R+D K + + Q+ + I +VKV S K Sbjct: 177 RKDSKAMNPADQIRVRASDRIKLVKVDSTK 206 >gi|113867079|ref|YP_725568.1| NADH dehydrogenase subunit J [Ralstonia eutropha H16] gi|113525855|emb|CAJ92200.1| NADH dehydrogenase chain J [Ralstonia eutropha H16] Length = 214 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 128/207 (61%), Gaps = 21/207 (10%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+F+ + ++S+ V+T +NP++S L+ +F AA +++LL AEF+A++ ++ Sbjct: 1 MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLSFFTAAAIWMLLKAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114 VYVGAV+V FLF++MM+DIDIE +R F + S ++ AE+ IV NF+ Sbjct: 61 VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMASVVGALIIAEMAIVLVRNFI- 115 Query: 115 FSAEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G + + G +N +GK++YT Y Y E++G ILL+++I A+ L LR R Sbjct: 116 ----GTTTPVATNGSQDPGYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRR 171 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKS 195 +D+K QD+S QL + D + +V ++S Sbjct: 172 KDVKAQDVSAQLRTRRDERVRLVPMQS 198 >gi|254486921|ref|ZP_05100126.1| NADH-quinone oxidoreductase chain j [Roseobacter sp. GAI101] gi|214043790|gb|EEB84428.1| NADH-quinone oxidoreductase chain j [Roseobacter sp. GAI101] Length = 200 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 120/201 (59%), Gaps = 15/201 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ I V RNP++SV LI AF++AAGLF++L AEFVAM+ ++VYVGAV Sbjct: 6 FYLFATCLIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVMLNAEFVAMLLIIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-MVF-------SAEG 119 V FLF++MMLD+D + R ++ + ++ F M F +AEG Sbjct: 66 VLFLFVVMMLDVDFAELKAEMAR------YMPLALLIGLIILMQFVMAFGAWDANVAAEG 119 Query: 120 ELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + +V N +G +LY +Y ++SG ILL++MIGAIVL LRHR D+KRQD+ Sbjct: 120 LRAHVVTDDVQNTAALGLILYDEYFLLFQLSGLILLVAMIGAIVLTLRHRPDVKRQDVVA 179 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 180 QMMRDPKLAMKLNDVKPGQGL 200 >gi|266660|sp|P29922|NQO10_PARDE RecName: Full=NADH-quinone oxidoreductase chain 10; AltName: Full=NADH dehydrogenase I, chain 10; AltName: Full=NDH-1, chain 10 gi|150612|gb|AAA25596.1| NADH dehydrogenase [Paracoccus denitrificans] Length = 200 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/201 (43%), Positives = 131/201 (65%), Gaps = 5/201 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FYLF+ A ++ F+VV RNP++SV LI AF++AAGLF+L GAEFVAM+ +VVY Sbjct: 1 MMTFAFYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD+D + R + IG +L A+L + S + S + E Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTP-SDQAES 119 Query: 122 SRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 R VEN +G VLY +Y +++G +LL++MIGAIVL +RHR+D+KRQ++ + Sbjct: 120 LRAAPVDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVAMIGAIVLTMRHRKDVKRQNVLE 179 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 180 QMWRDPAKTMELKDVKPGQGL 200 >gi|58584882|ref|YP_198455.1| NADH:ubiquinone oxidoreductase chain J [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419198|gb|AAW71213.1| NADH:ubiquinone oxidoreductase chain J [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 177 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 120/179 (67%), Gaps = 8/179 (4%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 ++VRNP+++V LIF FV++ LF+LLGAEF+AM+ L+VY+GAV V FLF++MMLDID Sbjct: 2 ISVRNPVHAVLFLIFTFVSSTVLFILLGAEFIAMMVLIVYIGAVAVLFLFVVMMLDID-- 59 Query: 83 VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-FKGNNVENIGKVLYTQ 141 R +GF F I+ + +F++ S+ +S ++ + NNV+ IG +LYT Sbjct: 60 --YIRIHQGFAKHFTFSIILCVVFFLVISFVICSSVLNISSVIDYNANNVKAIGDLLYTD 117 Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLESNPDNSIVMVKVKSGKGI 199 Y Y +SG +LL++++GAI L L+ ++ IKRQ++ KQL + +S+ +VK K GKG+ Sbjct: 118 YMYAFHLSGILLLVAIVGAIALTLQDKKKGIKRQNVLKQLTQS--SSVKLVKAKFGKGV 174 >gi|302383059|ref|YP_003818882.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brevundimonas subvibrioides ATCC 15264] gi|302193687|gb|ADL01259.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brevundimonas subvibrioides ATCC 15264] Length = 208 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 90/208 (43%), Positives = 130/208 (62%), Gaps = 18/208 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + FYL S +A++S LVVT RNP++SV LI AF ++AGLF+LLGAEF+AM+ +VVY Sbjct: 2 LQGIAFYLLSAVAVVSGLLVVTARNPVHSVLWLILAFFSSAGLFVLLGAEFLAMLLVVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA 117 VGAV V FLF++MMLD+D R + G+ L + G+L AE+++ + +V Sbjct: 62 VGAVAVLFLFVVMMLDVDFV----RLREGYATYLPLAAIVAGVLLAEMVMIS---IVVVQ 114 Query: 118 EGELSRLV------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 G S V +NVE IG+VLYT Y Y + +G +LL++MIGAIVL LR + + Sbjct: 115 GGAASDAVAPAVATADASNVETIGRVLYTDYIYFFQAAGIVLLIAMIGAIVLTLRKKPSV 174 Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199 +RQD Q + S+ + V +G G+ Sbjct: 175 RRQDPGAQTNRDRKTSVEIKGVVTGAGV 202 >gi|198284337|ref|YP_002220658.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666659|ref|YP_002426999.1| NADH-quinone oxidoreductase, J subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248858|gb|ACH84451.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518872|gb|ACK79458.1| NADH-quinone oxidoreductase, J subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 198 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/202 (38%), Positives = 120/202 (59%), Gaps = 14/202 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + ++ FY+FS + + S+ LV+T RNP+Y+ L+ AF NAA LF+LLGAEF+ +I ++VY Sbjct: 4 VTTILFYIFSAILLGSATLVITARNPVYATLYLVLAFFNAAALFILLGAEFLGLILILVY 63 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF-------FIGILAAELIVCASNFMVF 115 VGAV+V FLF++MMLDI++ R K GFL +G+L ++ S+ Sbjct: 64 VGAVMVLFLFVVMMLDINLA----RIKEGFLSYLPLGLAIAILGVLELAVVFWTSSLGHI 119 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 A L +N +G +LYT+Y YP EI+ ILL+++I AI L LR R K Q+ Sbjct: 120 PAPAALPA---DTDNTRALGILLYTKYLYPFEIAAVILLVAIIAAIALTLRRRTGTKTQN 176 Query: 176 ISKQLESNPDNSIVMVKVKSGK 197 I+ Q+ + + +V ++ + Sbjct: 177 IAAQMAVRAKDRVQLVDLREPE 198 >gi|294011318|ref|YP_003544778.1| NADH dehydrogenase I chain J [Sphingobium japonicum UT26S] gi|292674648|dbj|BAI96166.1| NADH dehydrogenase I chain J [Sphingobium japonicum UT26S] Length = 203 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/200 (43%), Positives = 127/200 (63%), Gaps = 13/200 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ + + S L + RNP++SV LI AF NAAGL +LLGAEF+AM+ ++VYVGAV Sbjct: 7 FYLFAILVVSSGALTILSRNPVHSVLWLIMAFFNAAGLMVLLGAEFIAMLLVIVYVGAVA 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS---NFMVFSAEG-ELSR 123 V FLF++MMLDID AE R GF+ G+L A L++ A ++SA EL++ Sbjct: 67 VLFLFVVMMLDIDF--AELRA--GFVDYLPFGLLIA-LVLLAEIVLGIGLWSAGPIELAQ 121 Query: 124 LVFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N N++ IG +LYT+Y + E +G +LL++MIGAIVL R R ++ Q+++KQ Sbjct: 122 RAAPVNPELSNIQAIGALLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRGQNVAKQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 P++++ V G+G+ Sbjct: 182 NRRRPEDAVRNVNQPVGQGV 201 >gi|119384967|ref|YP_916023.1| NADH dehydrogenase subunit J [Paracoccus denitrificans PD1222] gi|119374734|gb|ABL70327.1| NADH dehydrogenase subunit J [Paracoccus denitrificans PD1222] Length = 199 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 87/196 (44%), Positives = 129/196 (65%), Gaps = 5/196 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ A ++ F+VV RNP++SV LI AF++AAGLF+L GAEFVAM+ +VVYVGAV Sbjct: 5 FYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVYVGAVA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRLVF 126 V FLF++MMLD+D + R + IG +L A+L + S + S + E R Sbjct: 65 VLFLFVVMMLDVDFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTP-SDQAESLRAAP 123 Query: 127 KGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 VEN +G VLY +Y +++G +LL++MIGAIVL +RHR+D+KRQ++ +Q+ + Sbjct: 124 VDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVAMIGAIVLTMRHRKDVKRQNVLEQMWRD 183 Query: 184 PDNSIVMVKVKSGKGI 199 P ++ + VK G+G+ Sbjct: 184 PAKTMELKDVKPGQGL 199 >gi|307730331|ref|YP_003907555.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1003] gi|307584866|gb|ADN58264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1003] Length = 229 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 125/207 (60%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDVLRKDFKRFVPMATLVG----AIIVLETALILWHGYGA 116 Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S +V +N IGKV+YT Y + EI+G +LL+++I AI L H++D Sbjct: 117 TSTVVRDTTAAASGMGDWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIALTTSHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ IS+Q++ + + +VK+ S K Sbjct: 177 SKRQKISQQVKVRAQDRVRVVKMPSEK 203 >gi|117926900|ref|YP_867517.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Magnetococcus sp. MC-1] gi|117610656|gb|ABK46111.1| NADH dehydrogenase subunit J [Magnetococcus sp. MC-1] Length = 196 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/194 (39%), Positives = 121/194 (62%), Gaps = 8/194 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + + ++++ V+T +NP+ SV L+ AF AAGLFLL+ AEF+A+I ++VY+GAV Sbjct: 7 FYLLAAIMLVAALRVITAKNPVSSVMFLVLAFFTAAGLFLLIEAEFLAVILVMVYMGAVA 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + FLF++MMLD+D + ++G +GI +++ + S E V Sbjct: 67 ILFLFVVMMLDVDFALL----RQGARDHLPLGIAVGAVVLFEFAAVASSIHPEQHGAVV- 121 Query: 128 GNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 G NV N IGK+LYT+Y +P E++ ILL+++IGA+ L R R +++ Q+I Q+ Sbjct: 122 GENVNNTLEIGKILYTKYLFPFEVASLILLVALIGAVALAHRKRNNVRTQNIPDQIARTR 181 Query: 185 DNSIVMVKVKSGKG 198 D S+ + KVKSG+G Sbjct: 182 DESVALKKVKSGEG 195 >gi|323525445|ref|YP_004227598.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1001] gi|323382447|gb|ADX54538.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1001] Length = 227 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 125/207 (60%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDVLRKDFKRFVPMATVVG----AIIVLETALILWHGYGA 116 Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S +V +N IGKV+YT Y + EI+G +LL+++I AI L H++D Sbjct: 117 TSTVVRDTTAAASGMGDWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIALTTSHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ IS+Q++ + + +VK+ S K Sbjct: 177 SKRQTISQQVKVRAQDRVRVVKMPSEK 203 >gi|307293261|ref|ZP_07573107.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobium chlorophenolicum L-1] gi|306881327|gb|EFN12543.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobium chlorophenolicum L-1] Length = 203 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/204 (41%), Positives = 127/204 (62%), Gaps = 11/204 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + L FYLF+ + + S L + RNP++SV LI AF NAAGL +LLGAEF+AM+ ++VY Sbjct: 2 IHVLAFYLFAILVVSSGALTILSRNPVHSVLWLIMAFFNAAGLMVLLGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFSAEG- 119 VGAV V FLF++MMLDID AE R GF+ G+L A +++ ++SA Sbjct: 62 VGAVAVLFLFVVMMLDIDF--AELRA--GFVNYLPFGLLIAFVLLAEIVLGIGLWSAGPI 117 Query: 120 ELSRLVFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 EL++ N N++ IG +LYT+Y + E +G +LL++MIGAIVL R R ++ Q+ Sbjct: 118 ELAQRAAPVNPELSNIQAIGGLLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRGQN 177 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 ++KQ P +++ V G+G+ Sbjct: 178 VAKQNRRRPQDAVRNVNQPVGQGV 201 >gi|91782621|ref|YP_557827.1| NADH dehydrogenase subunit J [Burkholderia xenovorans LB400] gi|296160638|ref|ZP_06843453.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. Ch1-1] gi|91686575|gb|ABE29775.1| NADH dehydrogenase subunit J [Burkholderia xenovorans LB400] gi|295889164|gb|EFG68967.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. Ch1-1] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 125/207 (60%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDVLRKDFKRFVPMATLVG----AIIVIETALILWHGYGA 116 Query: 121 LSRLVFKGNNVEN----------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + N IGK++YT Y + E++G +LL+++I AI L H++D Sbjct: 117 TATALRDTTAAANGMGDWSNTRLIGKIIYTDYIFAFEVAGLVLLVAIIAAIALTTSHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ++S+Q++ + + +VK+KS K Sbjct: 177 SKRQNVSEQVKVRAQDRVRVVKMKSEK 203 >gi|121604339|ref|YP_981668.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Polaromonas naphthalenivorans CJ2] gi|120593308|gb|ABM36747.1| NADH dehydrogenase subunit J [Polaromonas naphthalenivorans CJ2] Length = 215 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 126/207 (60%), Gaps = 19/207 (9%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + + ++F V+T RNP+++ L+ AF AA +++LL AEF+A+ ++ Sbjct: 1 MDAKTGLFYVFAAVLLFAAFRVITARNPVHAALFLVLAFFQAAAVWILLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VYVGAV+V FLF++MMLDI+++ ++GF F + +I ++++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDSV----RKGFWKHFPLAGTVGAIIALEMSYVLMGGFRE 116 Query: 118 ---------EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 GEL+ V +N + +GKVLY+QY YPLEI+ ILL+++I AI L LR R Sbjct: 117 PPQGASMPVSGELAAQV---SNTKELGKVLYSQYIYPLEIAAVILLVAIIAAIALTLRER 173 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKS 195 +D KR + + Q+ + + +VK+KS Sbjct: 174 KDSKRTNPADQVRVKSQDRVRLVKMKS 200 >gi|160900603|ref|YP_001566185.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Delftia acidovorans SPH-1] gi|160366187|gb|ABX37800.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Delftia acidovorans SPH-1] Length = 222 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/205 (39%), Positives = 123/205 (60%), Gaps = 16/205 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F VVT RNP+++V +LI AF AAG++LLL AEF+ + ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAGIWLLLKAEFLGVTLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSA 117 VY+GAV+V FLF++MMLDI I+ ++GF F L LI ++ FS Sbjct: 61 VYLGAVMVLFLFVVMMLDIRIDAV----RQGFWKHFPFAALIGALIAFEMGMVLMGGFSG 116 Query: 118 EGELSRLVFKGN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 E + N N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR R Sbjct: 117 VEEPKAIAATVNAAGQTVQYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRKR 176 Query: 169 RDIKRQDISKQLESNPDNSIVMVKV 193 +D K + ++Q+ + + +VKV Sbjct: 177 KDSKAVNPAQQIRVRAKDRLELVKV 201 >gi|94309881|ref|YP_583091.1| NADH dehydrogenase subunit J [Cupriavidus metallidurans CH34] gi|93353733|gb|ABF07822.1| NADH dehydrogenase chain J [Cupriavidus metallidurans CH34] Length = 225 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 125/204 (61%), Gaps = 21/204 (10%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+F+ + ++S+ V+T +NP++S L+ AF AA ++++L AEF+A++ L+ Sbjct: 13 MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLAFFTAAAIWMILKAEFLAILLLL 72 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114 VYVGAV+V FLF++MM+DIDIE +R F + S ++ AE+ IV NF+ Sbjct: 73 VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMASIIGALIIAEMAIVLVRNFI- 127 Query: 115 FSAEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G + ++ G +N +GK++YT Y Y E++G ILL+++I A+ L LR R Sbjct: 128 ----GTTNAVLPPGAQDPNYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRR 183 Query: 169 RDIKRQDISKQLESNPDNSIVMVK 192 +D+K QD+ QL D + +VK Sbjct: 184 KDVKAQDVGAQLRVRRDERVRLVK 207 >gi|254455980|ref|ZP_05069409.1| NADH dehydrogenase i chain j [Candidatus Pelagibacter sp. HTCC7211] gi|207082982|gb|EDZ60408.1| NADH dehydrogenase i chain j [Candidatus Pelagibacter sp. HTCC7211] Length = 210 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 126/208 (60%), Gaps = 11/208 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++FFYLFS +AI+S+ +V +N ++SVF LI F++ + LF+++GAEF+ MI L+ Sbjct: 1 MIAHAIFFYLFSLIAIVSAIMVTASKNTVHSVFFLILDFISISCLFIMIGAEFLGMIMLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFM-- 113 VYVGAV V FLF++MML++ + + G +G++ + ELI+ + Sbjct: 61 VYVGAVAVLFLFVVMMLNVAQQKNQWFASEESSGHIPVGLIISTLIFFELIIVIGGWKYK 120 Query: 114 --VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 +F ++ + +N +IG++LYT Y + +ISG ILL++M+GAIVL R R + Sbjct: 121 PDLFDLNNSMTN--YSLSNTHSIGQILYTDYIHIFQISGMILLVAMVGAIVLTFRKREGV 178 Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199 K Q KQ+ + +++V+S KG+ Sbjct: 179 KTQSYLKQISRERSEGVKIIEVESNKGV 206 >gi|254467844|ref|ZP_05081250.1| NADH-ubiquinone oxidoreductase chain 6 [beta proteobacterium KB13] gi|207086654|gb|EDZ63937.1| NADH-ubiquinone oxidoreductase chain 6 [beta proteobacterium KB13] Length = 198 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 78/200 (39%), Positives = 124/200 (62%), Gaps = 7/200 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ FYLFS + +++S V+T NP+YS SL+ AF +AAG++LLL AEF+A+ ++ Sbjct: 1 MIFTDYLFYLFSGILVLASLRVITANNPVYSALSLVLAFFSAAGIWLLLHAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSA 117 VYVGAV+V FLF++MMLDI+IE R F F + +L A L + +V F + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIEALRQR----FWSYFPVALLIALLFIFEIYLVVTDKFFS 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + + +N +IG VLYT Y P +++ ILL+++I AIVL + ++ K D Sbjct: 117 SSDPAGIPLEKSNTHSIGSVLYTDYLLPFQVAAVILLVAIISAIVLTMYGKKSHKAIDPK 176 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ N ++ + +VK+KS K Sbjct: 177 DQIKVNRNDRVRVVKMKSEK 196 >gi|330813991|ref|YP_004358230.1| NADH-ubiquinone oxidoreductase chain J [Candidatus Pelagibacter sp. IMCC9063] gi|327487086|gb|AEA81491.1| NADH-ubiquinone oxidoreductase chain J [Candidatus Pelagibacter sp. IMCC9063] Length = 205 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 131/205 (63%), Gaps = 10/205 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ S+ FY FSF+ I SS +V+ +N +++VF LI FV+ + LF+++GAEF+ M+TL+ Sbjct: 1 MLAHSIIFYFFSFITIASSLMVIASKNTVHAVFFLILDFVSISSLFIMMGAEFLGMLTLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MM++++ K GFL G+L +I+ M+ + + + Sbjct: 61 VYVGAVAVLFLFVVMMINVNFS----ELKSGFLEYIPFGLLIGLVILLELGMMIATWKYK 116 Query: 121 -----LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + ++ K N E++G V+YT Y + ++SGFILL++MIGAIVL R + ++RQ Sbjct: 117 PDFVPSNTIINKTITNTESLGLVIYTDYIFFFQLSGFILLVAMIGAIVLTFRRKESLRRQ 176 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 DI+ Q+ +S+ +V+VK +G+ Sbjct: 177 DITTQVSRERTDSVELVEVKHSEGV 201 >gi|91789107|ref|YP_550059.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Polaromonas sp. JS666] gi|91698332|gb|ABE45161.1| NADH dehydrogenase subunit J [Polaromonas sp. JS666] Length = 217 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 126/205 (61%), Gaps = 17/205 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + + ++F V+T RNP+++ L+ AF AA +++LL AEF+A+ ++ Sbjct: 1 MDAKTGLFYVFAAVLLFAAFRVITARNPVHAALYLVLAFFQAAAVWILLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115 VYVGAV+V FLF++MMLDI+I+ ++GF F + +I ++++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDSV----RKGFWKHFPLAGTVGAIIALEMSYVLMGGFRE 116 Query: 116 -----SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 SA G++ V +N + +GK+LY++Y YPLE++ ILL++MI AI L LR R+D Sbjct: 117 PPKAASAPGQIGAQV---SNTKELGKLLYSEYLYPLEVAAVILLVAMIAAIALTLRQRKD 173 Query: 171 IKRQDISKQLESNPDNSIVMVKVKS 195 K + S Q+ + + +VK+KS Sbjct: 174 TKYINPSDQIRVKRGDRVSLVKMKS 198 >gi|332185920|ref|ZP_08387667.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Sphingomonas sp. S17] gi|332014278|gb|EGI56336.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Sphingomonas sp. S17] Length = 203 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 122/202 (60%), Gaps = 7/202 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++ FY+F+ + I+S+ L + RNP++SV LI AF NAAGL +L GAEF+AM+ ++VY Sbjct: 2 IQAIAFYIFATVVIVSAGLTIASRNPVHSVMWLILAFFNAAGLMVLCGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119 VGAV V FLF++MMLDI++ R + + ++ A F +S G Sbjct: 62 VGAVAVLFLFVVMMLDIEVAAMRAGFARYLPLGLALAVALLAEVIIA--FQAWSVGGVQL 119 Query: 120 --ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + +N++ IG +LYT+Y + E +G +LL++MIGAIVL R R ++ Q+I+ Sbjct: 120 AARAAPIAPEVSNIQAIGNLLYTRYLFIFEGAGLVLLVAMIGAIVLTHRKRGGVRPQNIA 179 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 KQ P +I + G+G+ Sbjct: 180 KQNARQPHEAIRNINQPIGQGV 201 >gi|326403105|ref|YP_004283186.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum AIU301] gi|325049966|dbj|BAJ80304.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum AIU301] Length = 216 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/197 (40%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY+F+ + ++S+ +V+T RNP++SV LI AF+NA LF+L GAEF+AM+ ++VYVG Sbjct: 4 TLAFYVFAAILLLSACMVITARNPVHSVLFLILAFINAGALFVLAGAEFLAMVLVIVYVG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSR 123 AV V FLF++MMLD+D +R IG IL E+ A + + A S+ Sbjct: 64 AVAVLFLFVVMMLDVDFAALREGFQRYAPLGLLIGFILMVEIGAVAIGWTITPAAHLASQ 123 Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + + N +G ++YT+Y + E+ +LL++MIGAIVL R +RQDIS Q + Sbjct: 124 VPMPAHLSNTAALGDLIYTRYMFAFELVALLLLVAMIGAIVLTHSGERRSRRQDISTQHQ 183 Query: 182 SNPDNSIVMVKVKSGKG 198 D ++ MVK+ GKG Sbjct: 184 RPIDETLTMVKLGIGKG 200 >gi|194289168|ref|YP_002005075.1| NADH dehydrogenase subunit j [Cupriavidus taiwanensis LMG 19424] gi|193223003|emb|CAQ69008.1| NADH:ubiquinone oxidoreductase complex I, chain J [Cupriavidus taiwanensis LMG 19424] Length = 240 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 127/207 (61%), Gaps = 21/207 (10%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+F+ + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A++ ++ Sbjct: 27 MELTTTIFYVFALVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLQAEFLAILLVL 86 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114 VYVGAV+V FLF++MM+DIDIE +R F + S ++ AE+ IV NF+ Sbjct: 87 VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMASIVGALIIAEMAIVLVRNFV- 141 Query: 115 FSAEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G + + G +N +GK++YT Y Y E++G ILL+++I A+ L LR R Sbjct: 142 ----GTTTPVAPAGSQEPGYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRR 197 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKS 195 +D+K QD+S QL + D + +V + + Sbjct: 198 KDVKAQDVSAQLRTRRDERVRLVPMAA 224 >gi|329889340|ref|ZP_08267683.1| NADH-quinone oxidoreductase subunit J [Brevundimonas diminuta ATCC 11568] gi|328844641|gb|EGF94205.1| NADH-quinone oxidoreductase subunit J [Brevundimonas diminuta ATCC 11568] Length = 207 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 131/201 (65%), Gaps = 4/201 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ L FYL + +A++S+ LVVT RNP++SV LI F +AAGLF+LL AEF+AM+ +VVY Sbjct: 1 MQGLAFYLLATVAVVSALLVVTARNPVHSVLWLILTFFSAAGLFVLLSAEFLAMLLVVVY 60 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD+D +++ E + L G+L AE+I+ + + A + Sbjct: 61 VGAVAVLFLFVVMMLDVDFVKLREGYARYLPLAGIVAGVLLAEMIMVSITVVQGGAARDA 120 Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + V G N+E IG+VLYT Y Y + +G +LL++MIGAIVL LRHR + RQD++ Sbjct: 121 TSPVPAGPDVTNIETIGRVLYTDYVYFFQAAGVVLLIAMIGAIVLTLRHRPGVHRQDLAA 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q ++ + V +G+G+ Sbjct: 181 QANRERAKAVEIKSVTTGQGV 201 >gi|188580276|ref|YP_001923721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium populi BJ001] gi|179343774|gb|ACB79186.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium populi BJ001] Length = 206 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 13/195 (6%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A+ S F+V+ RNP+ SV LI AFVNAAGLF+++GAEF+AMI +VVYVGAV V FLF+ Sbjct: 14 LAVASGFMVIAARNPVTSVLFLILAFVNAAGLFVMMGAEFLAMILVVVYVGAVAVLFLFV 73 Query: 74 IMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLVF 126 +MMLD+D +R G +G+ F+ EL++ + + + L R Sbjct: 74 VMMLDVDFAALRQGFQRYLPIGGLIGAIFL----IELLLVVGTWTIDPGLVQAPLGRAAH 129 Query: 127 --KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N E +G+VLYT Y Y +I+G ILL++MIGAIVL LR R +KRQ+IS Q Sbjct: 130 GETATNTEALGRVLYTDYVYAFQIAGLILLVAMIGAIVLTLRERTGVKRQNISVQNARTQ 189 Query: 185 DNSIVMVKVKSGKGI 199 ++ +KV S +G+ Sbjct: 190 TMAVDTIKVPSRQGV 204 >gi|89900295|ref|YP_522766.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rhodoferax ferrireducens T118] gi|89345032|gb|ABD69235.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodoferax ferrireducens T118] Length = 219 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 123/207 (59%), Gaps = 15/207 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FFY FS + + ++F V+T RNP+Y+V L+ AF AA ++LLL AEF+A+ ++ Sbjct: 1 MDVKTGFFYFFSIVLLFAAFRVITSRNPVYAVLYLVLAFFQAAAIWLLLRAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF----FIGILAAELIVCASNFMVFS 116 VYVGAV+V FLF++MMLDI ++ + GF F +G+ A L + A F Sbjct: 61 VYVGAVMVLFLFVVMMLDIKVD----GLREGFWKHFPLAATVGVFIA-LEMAAVLMGGFR 115 Query: 117 AEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 E V G +N +GKVLY QY YPLEI+G ILL++MI AI L LR R+D Sbjct: 116 VGDEPQSAVALGQASAEFSNTRELGKVLYGQYVYPLEIAGAILLVAMIAAIALTLRQRKD 175 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 K+ S Q+ + + ++K+ S K Sbjct: 176 SKQVSPSMQVRVKARDRMTVLKMASTK 202 >gi|73540673|ref|YP_295193.1| NADH dehydrogenase subunit J [Ralstonia eutropha JMP134] gi|72118086|gb|AAZ60349.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] Length = 240 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 126/202 (62%), Gaps = 11/202 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+F+ + ++S+ V+T +NP++S L+ +F AA ++LLL AEF+A++ ++ Sbjct: 27 MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLSFFTAAAIWLLLKAEFLAILLVL 86 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114 VYVGAV+V FLF++MM+DIDIE +R F L S ++ AE+ IV NF+ Sbjct: 87 VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPLASVVGALIIAEMAIVLVRNFIG 142 Query: 115 FSAEGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 +A + G +N +GK++Y Y Y E++G ILL+++I A+ L LR R+D+K Sbjct: 143 TTAPVLPAGSQDPGYSNTAALGKLIYNDYIYAFEVAGIILLVAIIAAVALTLRRRKDVKG 202 Query: 174 QDISKQLESNPDNSIVMVKVKS 195 QDI QL + D+ + +V + + Sbjct: 203 QDIPSQLRTRRDDRVRLVAMPA 224 >gi|148259941|ref|YP_001234068.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Acidiphilium cryptum JF-5] gi|146401622|gb|ABQ30149.1| NADH dehydrogenase subunit J [Acidiphilium cryptum JF-5] Length = 216 Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/197 (40%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY+F+ + ++S+ +V+T RNP++SV LI AF+NA LF+L GAEF+AM+ ++VYVG Sbjct: 4 TLAFYVFAAILLLSACMVITARNPVHSVLFLILAFINAGALFVLAGAEFLAMVLVIVYVG 63 Query: 65 AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 AV V FLF++MMLD+D + E ++ LG IL E+ A + + A S+ Sbjct: 64 AVAVLFLFVVMMLDVDFAALREGFQRYAPLGLLIGFILMVEIGAVAIGWTITPAAHLASQ 123 Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + + N +G ++YT+Y + E+ +LL++MIGAIVL R +RQDIS Q + Sbjct: 124 VPMPAHLSNTAALGDLIYTRYMFAFELVALLLLVAMIGAIVLTHSGERRSRRQDISMQHQ 183 Query: 182 SNPDNSIVMVKVKSGKG 198 D ++ MVK+ GKG Sbjct: 184 RPIDETLTMVKLGIGKG 200 >gi|296536147|ref|ZP_06898275.1| NADH-quinone oxidoreductase subunit J [Roseomonas cervicalis ATCC 49957] gi|296263518|gb|EFH10015.1| NADH-quinone oxidoreductase subunit J [Roseomonas cervicalis ATCC 49957] Length = 241 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 88/205 (42%), Positives = 127/205 (61%), Gaps = 17/205 (8%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY+F+ + I S+ +VVT RNP++SV LI AF NAA LFL+ GAEF+AMI ++VYVG Sbjct: 4 ALAFYVFAAILIASAVMVVTSRNPVHSVLFLILAFFNAAALFLIAGAEFLAMILVIVYVG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSAEG 119 AV V FLFI+MMLDID R + GF +G+ IL EL+ ++ F+ + Sbjct: 64 AVAVLFLFIVMMLDIDFA----RLREGFQRYAPIGAVIGAILFLELLFVFGSWQ-FAPDA 118 Query: 120 ELSRLVFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQ 174 RL + N E +G ++YT Y + +++G ILL++MIGAIVL LR + + KRQ Sbjct: 119 AALRLNPAPDAGVTNTEALGLLVYTDYVFLFQLAGLILLVAMIGAIVLTLRDKPANSKRQ 178 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 DI+ Q+ ++ M +V S G+ Sbjct: 179 DIAVQVARG--EAVTMKQVPSRAGL 201 >gi|325983280|ref|YP_004295682.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas sp. AL212] gi|325532799|gb|ADZ27520.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas sp. AL212] Length = 201 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 127/204 (62%), Gaps = 12/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ Q + FY FS + I+S+ V+ VRNP+ S L+ +FV AGL+LLL AEF+A+ ++ Sbjct: 1 MIFQDILFYSFSAILIVSALGVIIVRNPVNSALLLVLSFVTCAGLWLLLEAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV----FS 116 VYVGAV+V FLF++MMLDI+++ R + GF F G + A +IV + ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLDINLD----RLREGFWKWFPFGAMIALVIVVEISMVLMGKYFG 116 Query: 117 AEGELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 E E+ KG +N + +G+++YT+Y Y E++ +LL++MI AI L LRHR D K Sbjct: 117 YE-EMPIPEPKGADYSNTKELGRLIYTEYVYAFELAAVLLLVAMIAAIALTLRHREDKKS 175 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 + KQ++ ++ I +V + + K Sbjct: 176 TNPFKQVKVKKEDRIRIVSMSAEK 199 >gi|170696390|ref|ZP_02887519.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia graminis C4D1M] gi|170138718|gb|EDT06917.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia graminis C4D1M] Length = 228 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 124/208 (59%), Gaps = 14/208 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V +R + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDVLRKDFRRFVPMATVVG----AIIVLETALILWHGYGA 116 Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S +V +N IGKV+YT Y + E++G +LL+++I AI L H++D Sbjct: 117 TSTVVPDTTAAAGGMGDWSNTRLIGKVIYTDYIFAFEVAGLVLLVAIIAAIALTTSHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGKG 198 KRQ IS Q++ + + +VK+ S K Sbjct: 177 SKRQKISDQVKVRAQDRVRVVKMPSEKS 204 >gi|207723882|ref|YP_002254280.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia solanacearum MolK2] gi|206589087|emb|CAQ36049.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia solanacearum MolK2] Length = 210 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 122/204 (59%), Gaps = 10/204 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114 VYVGAV+V FLF++MM+D+DIE +R F +G+F I+ E+ +V FM Sbjct: 61 VYVGAVMVLFLFVVMMIDVDIE----HLRRDFWTYVPMGAFVGAIIIMEMAVVLTKAFMG 116 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S + G N + +GK++YT Y Y EI+G +LLL+++ A+ L R R+D K Q Sbjct: 117 RSQPVQELPKALSGPNTQALGKLIYTDYLYAFEIAGAVLLLAIVAAVALTARRRKDTKAQ 176 Query: 175 DISKQLESNPDNSIVMVKVKSGKG 198 ++ Q+ + + +V + + K Sbjct: 177 KVADQVRVQRKDRVRLVSMPAEKA 200 >gi|83746306|ref|ZP_00943359.1| NADH-quinone oxidoreductase chain J [Ralstonia solanacearum UW551] gi|207742744|ref|YP_002259136.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia solanacearum IPO1609] gi|300703651|ref|YP_003745253.1| NADH-quinone oxidoreductase subunit j [Ralstonia solanacearum CFBP2957] gi|83727056|gb|EAP74181.1| NADH-quinone oxidoreductase chain J [Ralstonia solanacearum UW551] gi|206594138|emb|CAQ61065.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia solanacearum IPO1609] gi|299071314|emb|CBJ42632.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum CFBP2957] Length = 210 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 122/204 (59%), Gaps = 10/204 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114 VYVGAV+V FLF++MM+DIDIE +R F +G+F ++ E+ +V FM Sbjct: 61 VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMG 116 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S + G N + +GK++YT Y Y EI+G +LLL+++ A+ L R R+D K Q Sbjct: 117 RSQPVQELPKALSGPNTQALGKLIYTDYLYAFEIAGAVLLLAIVAAVALTARRRKDTKAQ 176 Query: 175 DISKQLESNPDNSIVMVKVKSGKG 198 ++ Q+ + + +V + + K Sbjct: 177 KVADQVRVQRKDRVRLVSMPAEKA 200 >gi|94496471|ref|ZP_01303048.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas sp. SKA58] gi|94424217|gb|EAT09241.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas sp. SKA58] Length = 203 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 125/201 (62%), Gaps = 15/201 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ + + S L + RNP++SV LI AF NAAGL +LLGAEF+AM+ ++VYVGAV Sbjct: 7 FYLFATIVVCSGALTILSRNPVHSVLWLILAFFNAAGLMILLGAEFIAMLLVIVYVGAVA 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-----GSFFIGILAAELIVCASNFMVFSAEGELS 122 V FLF++MMLDID AE R GF+ G +L AE+++ + V EL+ Sbjct: 67 VLFLFVVMMLDIDF--AELRA--GFVSYLPFGLLVALVLLAEIVLGIGLWSV--GPIELA 120 Query: 123 RLVFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + N N++ IG +LYT+Y + E +G +LL++MIGAIVL R R ++ Q+I++ Sbjct: 121 QRAGPVNPELSNIQAIGALLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRPQNIAR 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q + P +++ V G+G+ Sbjct: 181 QNQRRPQDAVRNVNQPVGQGV 201 >gi|296444803|ref|ZP_06886766.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylosinus trichosporium OB3b] gi|296257751|gb|EFH04815.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylosinus trichosporium OB3b] Length = 200 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/200 (45%), Positives = 124/200 (62%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FFYLFS + I S+F V+ RNP++SV LI AFVN AGLFLL GAEF+AMI +VVY Sbjct: 1 MAAAFFYLFSAVLIASAFAVIVARNPVHSVLFLILAFVNGAGLFLLAGAEFLAMILVVVY 60 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD+D E+ + K LG+ ++ EL + A + + E Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELRQGFSKHLPLGAGVGAVVLIELGMIAVGWQSAPSALEA 120 Query: 122 SRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 ++ +N +G+VLYT+Y + S +LL +MIGAIVL L HR +KRQ I++Q Sbjct: 121 AQTPIAAGVSNTAALGQVLYTKYFVFFQASALVLLTAMIGAIVLTLHHRPGVKRQKIAEQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 +N I + KV S G+ Sbjct: 181 NARTRENVIEIKKVPSRAGV 200 >gi|330994063|ref|ZP_08317993.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter sp. SXCC-1] gi|329759009|gb|EGG75523.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter sp. SXCC-1] Length = 257 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 126/201 (62%), Gaps = 4/201 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+F+ + ++S+ +VV RNP++SV LI AF NAAGLFL+ GAEF+AM ++VY Sbjct: 2 MTQIVFYVFAAVLVLSATMVVCARNPVHSVLFLILAFFNAAGLFLIAGAEFLAMTLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD++ + E ++ +G G+L EL++ + + S ++ Sbjct: 62 VGAVAVLFLFVVMMLDVNFTRMREGVQRYAPIGGLVGGVLLVELVMAFARWRSASNIDQI 121 Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + LV N +G V+YT Y + + +LL++MIGAIVL LR R +RQ+I + Sbjct: 122 AHLVPSSPTRTNTAALGDVIYTHYIFLFQSCALVLLVAMIGAIVLTLRDRPSGRRQNIDR 181 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q + P +S+ M++V G G+ Sbjct: 182 QHDRVPHDSLEMLQVPLGAGV 202 >gi|321268733|gb|ADW79182.1| NADH dehydrogenase subunit 6 [Cyanophora paradoxa] Length = 220 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/217 (40%), Positives = 127/217 (58%), Gaps = 39/217 (17%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LFF+LFS AIISSF+ +T + IYSVF LI F NAAGL ++LGAEF+AM+ LVVY+GA Sbjct: 12 LFFFLFSLGAIISSFIAITTNSSIYSVFYLILVFFNAAGLLIMLGAEFLAMLFLVVYLGA 71 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGS--FFIGIL---------------------- 101 + + FLF+IMML+I I K + LG+ FFI +L Sbjct: 72 IAILFLFVIMMLNIKI---NQFKNKIILGAQVFFITLLFSLIYINIPHNSFINLSEILTF 128 Query: 102 --AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK-----VLYTQYAYPLEISGFILL 154 + +LI+ +N+ + +L+ L + N+ I ++YTQYAY +S ILL Sbjct: 129 NDSEKLILFLNNYSI-----QLNNLFYNINSFNYITNSHQFFIVYTQYAYYFLLSALILL 183 Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMV 191 +S+IGAIVL L + ++K+QD++KQ+ N +I V Sbjct: 184 VSLIGAIVLTLHKKINVKKQDLNKQINRNFQTTIKTV 220 >gi|134296424|ref|YP_001120159.1| NADH dehydrogenase subunit J [Burkholderia vietnamiensis G4] gi|134139581|gb|ABO55324.1| NADH dehydrogenase subunit J [Burkholderia vietnamiensis G4] Length = 216 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 125/204 (61%), Gaps = 11/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDFL----RRDFKKFVPMATVVGAIIVVETALILWRGYGD 116 Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + +N IGKV+YT Y + EI+G +LL+++I AI L RH +D KR Sbjct: 117 THTVHAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTARHGKDSKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 Q +S Q++ ++ + +VK+++ K Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEADK 200 >gi|163850508|ref|YP_001638551.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium extorquens PA1] gi|218529205|ref|YP_002420021.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium chloromethanicum CM4] gi|240137573|ref|YP_002962044.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) [Methylobacterium extorquens AM1] gi|254560044|ref|YP_003067139.1| NADH-quinone oxidoreductase subunit J [Methylobacterium extorquens DM4] gi|163662113|gb|ABY29480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium extorquens PA1] gi|218521508|gb|ACK82093.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium chloromethanicum CM4] gi|240007541|gb|ACS38767.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) [Methylobacterium extorquens AM1] gi|254267322|emb|CAX23154.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) [Methylobacterium extorquens DM4] Length = 206 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 118/193 (61%), Gaps = 13/193 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 + S F+V+ RNP+ SV LI AFVNAAGLF+L+GAEF+AMI +VVYVGAV V FLF++M Sbjct: 16 VASGFMVIAARNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVVVYVGAVAVLFLFVVM 75 Query: 76 MLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLVF-- 126 MLD+D +R G +G+ F+ EL++ + + + L R Sbjct: 76 MLDVDFAALRQGFQRYLPIGGLIGAIFL----IELVLVVGTWTIDPGLVQAPLGRAAHGE 131 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186 N E +G+VLYT Y Y +I+G ILL++MIGAIVL LR R +KRQ+I+ Q Sbjct: 132 TATNTEALGRVLYTDYVYAFQIAGLILLVAMIGAIVLTLRERTGVKRQNIAVQNARTQGM 191 Query: 187 SIVMVKVKSGKGI 199 ++ +KV S +G+ Sbjct: 192 AVDTIKVPSRQGV 204 >gi|295676046|ref|YP_003604570.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1002] gi|295435889|gb|ADG15059.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1002] Length = 230 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 125/209 (59%), Gaps = 18/209 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVACALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSAE 118 VYVGAV+V FLF++MMLDI+++V KR F+ + +A +IV + +++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDVLRKDFKR------FVPMASAVGAIIVIETALILWHGY 114 Query: 119 GELSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G + + +N IGKV+YT Y + EI+G ILL+++I AI L H+ Sbjct: 115 GATATALHDTASAAAGMGDWSNTRLIGKVIYTNYIFAFEIAGLILLVAIIAAIALTTSHK 174 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGK 197 +D KRQ++S Q++ + + +VK+ S K Sbjct: 175 KDSKRQNVSAQVKVRAQDRVRVVKMPSEK 203 >gi|209518506|ref|ZP_03267327.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. H160] gi|209501051|gb|EEA01086.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. H160] Length = 230 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 124/209 (59%), Gaps = 18/209 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVACALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSAE 118 VYVGAV+V FLF++MMLD++++V KR F+ + +A +IV + +++ Sbjct: 61 VYVGAVMVLFLFVVMMLDVNLDVLRKDFKR------FVPMASAVGAIIVVETALILWHGY 114 Query: 119 GELSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G + + +N IGKV+YT Y + EI+G ILL+++I AI L H+ Sbjct: 115 GATTAALHDTASAAAGMGDWSNTRVIGKVIYTNYIFAFEIAGLILLVAIIAAIALTTSHK 174 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSGK 197 +D KRQ++S Q+ + + +VK+ S K Sbjct: 175 KDSKRQNVSAQVRVRAQDRVRVVKMPSEK 203 >gi|71083591|ref|YP_266310.1| NADH dehydrogenase I subunit J [Candidatus Pelagibacter ubique HTCC1062] gi|91761988|ref|ZP_01263953.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique HTCC1002] gi|71062704|gb|AAZ21707.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique HTCC1062] gi|91717790|gb|EAS84440.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique HTCC1002] Length = 210 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 7/206 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++FFY FSF+AI+S+ +V +N ++SVF LI F++ + LF+++GAEF+ MI L+ Sbjct: 1 MLAHAIFFYTFSFIAIVSAIMVTVSKNTVHSVFFLILDFISISCLFIMIGAEFLGMIMLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE-----VAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV V FLF++MML++ + A+ K +G I+ ELI+ + Sbjct: 61 VYVGAVAVLFLFVVMMLNVAQQKNQWFSAQESSKHIPIGLIVSVIIFFELIIVIGGWKYK 120 Query: 116 SAEGELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 L N N +IG VLYT Y + ++SG ILL++MIGAIVL R R +KR Sbjct: 121 PDLVSAMSLTIDKNITNTHSIGYVLYTDYIHVFQLSGMILLVAMIGAIVLTFRQRSGVKR 180 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q Q+ + + ++ V++ KG+ Sbjct: 181 QSYFSQISRERSDGVELIDVENNKGV 206 >gi|83592899|ref|YP_426651.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodospirillum rubrum ATCC 11170] gi|83575813|gb|ABC22364.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodospirillum rubrum ATCC 11170] Length = 205 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 87/208 (41%), Positives = 132/208 (63%), Gaps = 13/208 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++Q+L FY+ + + + S+F+VV RNP++SV LI FVN+AGLFLL+GAEFVAM+ +V Sbjct: 1 MIIQALIFYMLAAIMVASAFMVVISRNPVHSVLWLILTFVNSAGLFLLMGAEFVAMVVVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVF 115 VYVGAV V FLF++MMLDI+ R + GFL +G +L AE+ V A + + Sbjct: 61 VYVGAVAVLFLFVVMMLDINYL----RLREGFLSYMPLGAAMGVVLLAEIAVLAGGWAMA 116 Query: 116 SAEGELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 L R+ N + IG+VLYT Y Y + +G +LL++MIG+I+L R + Sbjct: 117 PDAMGLRRVPMVDPAALTNTQAIGQVLYTDYIYLFQAAGLVLLVAMIGSIMLTHRANPLV 176 Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199 KRQ+++ Q+ + ++ + KV +G+GI Sbjct: 177 KRQNVADQIARRKERTLKLNKVPTGRGI 204 >gi|121609753|ref|YP_997560.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Verminephrobacter eiseniae EF01-2] gi|121554393|gb|ABM58542.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Verminephrobacter eiseniae EF01-2] Length = 223 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 123/214 (57%), Gaps = 25/214 (11%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+T RNP+++V LI AF AA ++LLL AEF+A+ ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVITARNPVHAVLYLILAFSQAAAVWLLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC------------ 108 VY+GAV+V FLF++MMLDI I+ +RGF F + LI Sbjct: 61 VYLGAVMVLFLFVVMMLDIHID----SLRRGFWKHFPLAASVGALIALEMAAVLMGGFRA 116 Query: 109 -----ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 A + A G+L +N + +GK+LYT+Y +P+EI+ ILL++MI AI L Sbjct: 117 TDEPKAGVAIADDAAGQL----LAYSNSKALGKLLYTEYLFPVEIAAVILLVAMIAAIAL 172 Query: 164 MLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 LR R+D K D + Q+ + + +V++ + + Sbjct: 173 TLRQRKDSKAIDAAAQIRVRASDRLELVRMAATR 206 >gi|30249728|ref|NP_841798.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas europaea ATCC 19718] gi|30180765|emb|CAD85679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas europaea ATCC 19718] Length = 201 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 130/204 (63%), Gaps = 12/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q FY + + +I++ V+T+RNP++S L+ AFV ++GL+LLL AEF+A++ ++ Sbjct: 1 MNLQDFVFYSLASVVVIAALGVITLRNPVHSALLLVLAFVTSSGLWLLLEAEFLAIVLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAE--LIVCASNFM 113 VYVGAV+V FLF++MMLDI+++ R + GF F G I+ E +++ + F Sbjct: 61 VYVGAVMVLFLFVVMMLDINLD----RMREGFWKWFPFGAILALIMTGEIGIVLMSKQFG 116 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + +S+ V +N + +G++LYT Y Y E+S ILL++M+ AI + LR+R D K Sbjct: 117 PENIQIPVSKSV-DYSNTKELGQLLYTDYVYAFELSAVILLVAMVAAIAITLRYRTDKKS 175 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 ++SKQ+ ++ + + ++ + + + Sbjct: 176 SNVSKQVAASREKRLKVISIPAER 199 >gi|83718554|ref|YP_441623.1| NADH dehydrogenase subunit J [Burkholderia thailandensis E264] gi|167580431|ref|ZP_02373305.1| NADH dehydrogenase subunit J [Burkholderia thailandensis TXDOH] gi|167618540|ref|ZP_02387171.1| NADH dehydrogenase subunit J [Burkholderia thailandensis Bt4] gi|257139681|ref|ZP_05587943.1| NADH dehydrogenase subunit J [Burkholderia thailandensis E264] gi|83652379|gb|ABC36442.1| NADH dehydrogenase I, J subunit [Burkholderia thailandensis E264] Length = 218 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 127/205 (61%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSA 117 VYVGAV+V FLF++MMLDI+I+V +R F + + +IV + ++ + A Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDVL----RRDFKRFVPMATVVGAIIVVETALILWRGYGA 116 Query: 118 EGELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 G R + G N + IGKV+YT Y + EI+G +LL+++I A+ L + +D K Sbjct: 117 TGSPVRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ +S+Q++ ++ + +VK+++ K Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201 >gi|325524299|gb|EGD02411.1| NADH:ubiquinone oxidoreductase subunit J [Burkholderia sp. TJI49] Length = 216 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 122/200 (61%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G ++ LI+ +A Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDFLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHAA 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KRQ +S Sbjct: 121 HAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ D+ + +VK+++ K Sbjct: 181 DQVKVRRDDRVRLVKMEAEK 200 >gi|167585981|ref|ZP_02378369.1| NADH dehydrogenase subunit J [Burkholderia ubonensis Bu] Length = 217 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDFL----RRDFKKFVPMATVVGAIIVVETALVLWHGYGA 116 Query: 121 LS---RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 R + +G N IGKV+YT Y + EI+G +LL+++I A+ L R +D K Sbjct: 117 TEAPVRAMAQGAMATWPNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTERKGKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ +S Q++ D+ + +VK+++ K Sbjct: 177 RQRVSDQVKVRRDDRVRLVKMEADK 201 >gi|167836058|ref|ZP_02462941.1| NADH dehydrogenase subunit J [Burkholderia thailandensis MSMB43] Length = 218 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+V +R F + + +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDVL----RRDFRRFVPMATVVGAIIVVETALILWRGYGA 116 Query: 121 LSRLVFK--------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 V N + IGKV+YT Y + EI+G +LL+++I A+ L + +D K Sbjct: 117 TGSPVHDMAAGAAAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ +S+Q++ ++ + +VK+++ K Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201 >gi|217979058|ref|YP_002363205.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocella silvestris BL2] gi|217504434|gb|ACK51843.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocella silvestris BL2] Length = 201 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/204 (45%), Positives = 129/204 (63%), Gaps = 15/204 (7%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +LFFYLFS + I S+F V+T RNP++SV LI AF NAAGLFLLLGAEF+AM+ +VVYVG Sbjct: 4 ALFFYLFSAVLIASAFAVITSRNPVHSVLFLILAFFNAAGLFLLLGAEFLAMLLVVVYVG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVCASNFMVFSAEG 119 AV V FLF++MMLD+D K+GF+ +G I+ EL++ + V +A Sbjct: 64 AVAVLFLFVVMMLDVDFA----EFKQGFMRYLPVGGAIGAIVLLELVLVVGGWRVDAA-- 117 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 L+ + +N +G+VLYTQYA +G +LL +MIGAI+L L H+ IKRQD Sbjct: 118 SLANVASPAPPAMSNTLALGRVLYTQYACLFIAAGMVLLTAMIGAIILTLHHKVGIKRQD 177 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q P +++ + K +G+ Sbjct: 178 IAAQNARTPKDAVELRKKSFRQGV 201 >gi|17546772|ref|NP_520174.1| NADH dehydrogenase subunit J [Ralstonia solanacearum GMI1000] gi|17429072|emb|CAD15760.1| probable transmembrane nadh dehydrogenaseI(chain j) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 210 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 120/197 (60%), Gaps = 10/197 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114 VYVGAV+V FLF++MM+D+DIE +R F +G+F ++ E+ +V FM Sbjct: 61 VYVGAVMVLFLFVVMMIDVDIE----HLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMG 116 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S + G N + +GK++YT Y Y E++G +LLL+++ A+ L R R+D K Q Sbjct: 117 RSQPVQELPKALSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQ 176 Query: 175 DISKQLESNPDNSIVMV 191 +++ Q+ + + +V Sbjct: 177 NVADQIRVQRKDRVRLV 193 >gi|57239208|ref|YP_180344.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Welgevonden] gi|58579166|ref|YP_197378.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Welgevonden] gi|58617219|ref|YP_196418.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Gardel] gi|57161287|emb|CAH58208.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Welgevonden] gi|58416831|emb|CAI27944.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Gardel] gi|58417792|emb|CAI26996.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Welgevonden] Length = 200 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/197 (41%), Positives = 122/197 (61%), Gaps = 7/197 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF+ F+ + I+SS V+ V NP+YSV LI F ++ LF+LLGAE +AM+ ++VY Sbjct: 1 MIYFFFHFFAVLVILSSIAVIYVSNPVYSVLFLILTFFMSSTLFILLGAELIAMLVIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-FSAEGEL 121 VGAV V FLF++MMLDI+ R K GF F IG+++ ++ F++ SA +L Sbjct: 61 VGAVAVLFLFVVMMLDINYS----RFKHGFTKYFVIGLISGMILFVNMVFIIKHSATADL 116 Query: 122 -SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQ 179 + +NV IG ++YT+Y Y +SG +LL+S+IG++VL LR + +I+RQ Q Sbjct: 117 VTESKPYVSNVMAIGNLIYTKYMYIFHLSGVLLLISIIGSLVLTLRDKGNNIRRQSPDIQ 176 Query: 180 LESNPDNSIVMVKVKSG 196 + +P V VKV+ G Sbjct: 177 ISRSPFVKYVDVKVRGG 193 >gi|167562186|ref|ZP_02355102.1| NADH dehydrogenase subunit J [Burkholderia oklahomensis EO147] gi|167569431|ref|ZP_02362305.1| NADH dehydrogenase subunit J [Burkholderia oklahomensis C6786] Length = 218 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 127/205 (61%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V KR + +G +I+ + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINVDVLRRDFKRFVPMATAVG----AIIIVETALILWRGYGA 116 Query: 121 LS---RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + R V G N + IGKV+YT Y + EI+G +LL+++I A+ L + +D K Sbjct: 117 TASPVRDVAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ +S+Q++ ++ + +VK+++ K Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201 >gi|114777370|ref|ZP_01452367.1| NADH dehydrogenase I chain J [Mariprofundus ferrooxydans PV-1] gi|114552152|gb|EAU54654.1| NADH dehydrogenase I chain J [Mariprofundus ferrooxydans PV-1] Length = 194 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/196 (41%), Positives = 121/196 (61%), Gaps = 10/196 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++++FF LF+ ++++S VV RN ++SV LIF F NAAGLF LL AEF+ +I +++Y Sbjct: 2 LETVFFNLFAGLSVLSGMGVVLARNTMHSVMFLIFCFFNAAGLFFLLDAEFIGIIMILIY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI----VCASNFMVFS-- 116 VGAV+V F F++MML+I+ R + GFL +G L A ++ + A+ VFS Sbjct: 62 VGAVMVLFTFVVMMLEIN----TARMREGFLQYLPLGGLVAIVLLVEFISAAVSGVFSSG 117 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 A L NN IG+VLYT+Y EI+ ILL+++IGAIVL LR R+D K Q I Sbjct: 118 AMATADHLPQSVNNTVEIGQVLYTKYLLGFEIAALILLVALIGAIVLTLRTRKDAKYQKI 177 Query: 177 SKQLESNPDNSIVMVK 192 + Q+ ++ + V+ Sbjct: 178 AAQVGVRKEDRMRKVR 193 >gi|302879332|ref|YP_003847896.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gallionella capsiferriformans ES-2] gi|302582121|gb|ADL56132.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gallionella capsiferriformans ES-2] Length = 200 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/192 (37%), Positives = 125/192 (65%), Gaps = 8/192 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ + +++ VV RNP+++ L+ AF +AAG+++LL AEF+A+ ++VYVGAV+ Sbjct: 8 FYLFATITVLAGVGVVVARNPVHAALFLVLAFCSAAGIWMLLEAEFLAITLILVYVGAVM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-GELSRLVF 126 V FLF++MMLDI++ + + GF F G L A L+V +++ S + ++S+ + Sbjct: 68 VLFLFVVMMLDINLV----KLREGFWRWFPFGALLAGLMVFEMVWVLGSRQTADVSKAIV 123 Query: 127 KG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 +N + +G+++YTQY YP EI+ ILL++M+ AI L LR R +K Q+++ Q++ Sbjct: 124 HAADYSNTKELGRLIYTQYVYPFEIAAVILLVAMVAAIALTLRRRAGVKSQNVADQVKVK 183 Query: 184 PDNSIVMVKVKS 195 + + +V +KS Sbjct: 184 KADRLRIVSMKS 195 >gi|187929284|ref|YP_001899771.1| NADH dehydrogenase subunit J [Ralstonia pickettii 12J] gi|187726174|gb|ACD27339.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ralstonia pickettii 12J] Length = 210 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 123/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY F+ + ++++ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFALVLVLAALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG----SFFIG--ILAAELIVCASNFM- 113 VYVGAV+V FLF++MM+DIDIE +R F + F+G I+ +V FM Sbjct: 61 VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMAAFVGVVIILEMAVVLTKTFMG 116 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 EL + F G N + +GK++YT Y Y E++G +LLL+++ A+ L R R+D K Sbjct: 117 RVQPVQELPK-GFTGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDTKA 175 Query: 174 QDISKQLESNPDNSIVMVKVKSGKG 198 Q++S Q+ + + +V + + K Sbjct: 176 QNVSDQIRVKRKDRVRLVSMPAEKS 200 >gi|300691034|ref|YP_003752029.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum PSI07] gi|299078094|emb|CBJ50737.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum PSI07] Length = 210 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 119/197 (60%), Gaps = 10/197 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114 VYVGAV+V FLF++MM+D+DIE +R F +G+F ++ E+ +V FM Sbjct: 61 VYVGAVMVLFLFVVMMIDVDIE----NLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMG 116 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S + G N + +GK++YT Y Y E++G +LLL+++ A+ L R R+D K Q Sbjct: 117 RSQPVQELPKTLSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQ 176 Query: 175 DISKQLESNPDNSIVMV 191 ++ Q+ + + +V Sbjct: 177 KVADQIRVQRKDRVRLV 193 >gi|241663475|ref|YP_002981835.1| NADH dehydrogenase subunit J [Ralstonia pickettii 12D] gi|309781861|ref|ZP_07676594.1| NADH dehydrogenase (ubiquinone), J subunit [Ralstonia sp. 5_7_47FAA] gi|240865502|gb|ACS63163.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ralstonia pickettii 12D] gi|308919502|gb|EFP65166.1| NADH dehydrogenase (ubiquinone), J subunit [Ralstonia sp. 5_7_47FAA] Length = 210 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 123/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY F+ + ++++ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFALVLVLAALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG----SFFIG--ILAAELIVCASNFM- 113 VYVGAV+V FLF++MM+DIDIE +R F + F+G I+ +V FM Sbjct: 61 VYVGAVMVLFLFVVMMIDIDIE----HLRRDFWTYVPMAAFVGVVIILEMAVVLTKTFMG 116 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 EL + F G N + +GK++YT Y Y E++G +LLL+++ A+ L R R+D K Sbjct: 117 RVQPVQELPK-GFNGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDTKA 175 Query: 174 QDISKQLESNPDNSIVMVKVKSGKG 198 Q++S Q+ + + +V + + K Sbjct: 176 QNVSDQIRVKRKDRVRLVSMPAEKS 200 >gi|299066342|emb|CBJ37526.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum CMR15] Length = 210 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 120/197 (60%), Gaps = 10/197 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114 VYVGAV+V FLF++MM+D+DIE +R F +G+F ++ E+ +V FM Sbjct: 61 VYVGAVMVLFLFVVMMIDVDIE----HLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMG 116 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S + G N + +GK++YT Y Y E++G +LLL+++ A+ L R R+D K Q Sbjct: 117 RSQPVQELPKALSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQ 176 Query: 175 DISKQLESNPDNSIVMV 191 +++ Q+ + + ++ Sbjct: 177 NVADQVRVQRKDRVRLI 193 >gi|332528760|ref|ZP_08404737.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Hylemonella gracilis ATCC 19624] gi|332041826|gb|EGI78175.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Hylemonella gracilis ATCC 19624] Length = 217 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 127/205 (61%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FF+LFS + +I++ VVT RNP+++V L+ AF A+ ++LLL AEF+A+ ++ Sbjct: 1 MDVKTGFFFLFSAVLLIAALRVVTARNPVHAVLFLMLAFSQASAIWLLLQAEFLAVALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VY+GAV+V FLF++MMLDI I+ + ++GF + +L ++V ++ + Sbjct: 61 VYLGAVMVLFLFVVMMLDIRID----QLRQGFWKHLPLALLLGGIVVVEMAAVLLTGFDM 116 Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +L V + +N + +G +LYT+Y +P++I+ ILL++MI AI L LR R+D K Sbjct: 117 VDPQVAAQLPAGVAEESNAKALGILLYTRYVWPIQIAAAILLVAMIAAIALTLRARKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 D S Q+ + + +VKV+ + Sbjct: 177 AIDPSIQVRVRAADRLQLVKVEPTR 201 >gi|296283849|ref|ZP_06861847.1| NADH dehydrogenase I, J subunit [Citromicrobium bathyomarinum JL354] Length = 206 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/209 (42%), Positives = 132/209 (63%), Gaps = 16/209 (7%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++Q++ FYLF+ M I S L + RNP++SV LI AF NAAGL +LLGAEF+AM+ +VV Sbjct: 1 MIQAIAFYLFATMVIASGVLTIMSRNPVHSVLWLILAFFNAAGLMVLLGAEFIAMLLVVV 60 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI----------VCASN 111 YVGAV V FLF++MMLD+D+ AE R GF+ +F +GI A ++ + A Sbjct: 61 YVGAVAVLFLFVVMMLDVDM--AELRA--GFIKNFPLGIAIALVLLAELVLGIGALGAGP 116 Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + +A G + +N+ENIG +LY++Y + E +G ILL++MIGAIVL R + Sbjct: 117 LELGTASGA-NAPNLANSNIENIGALLYSKYIFVFEAAGLILLVAMIGAIVLTHRDLKTT 175 Query: 172 K-RQDISKQLESNPDNSIVMVKVKSGKGI 199 + Q+I+KQ+ NP + M + G+G+ Sbjct: 176 RGHQNITKQVRRNPKEATQMKQPTVGEGV 204 >gi|115352329|ref|YP_774168.1| NADH dehydrogenase subunit J [Burkholderia ambifaria AMMD] gi|170698118|ref|ZP_02889198.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia ambifaria IOP40-10] gi|171316312|ref|ZP_02905533.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia ambifaria MEX-5] gi|115282317|gb|ABI87834.1| NADH dehydrogenase subunit J [Burkholderia ambifaria AMMD] gi|170136976|gb|EDT05224.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia ambifaria IOP40-10] gi|171098538|gb|EDT43339.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia ambifaria MEX-5] Length = 216 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVVETALILWRGYGD 116 Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KR Sbjct: 117 THTVHAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 Q +S Q++ ++ + +VK+++ K Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEAEK 200 >gi|82702229|ref|YP_411795.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosospira multiformis ATCC 25196] gi|82410294|gb|ABB74403.1| NADH dehydrogenase subunit J [Nitrosospira multiformis ATCC 25196] Length = 201 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 122/204 (59%), Gaps = 12/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY FS + + S+ V+T RNP++S L+ AF +AGL+LLL AEF+A+ ++ Sbjct: 1 MSFTDIIFYFFSAVLVASALGVITARNPVHSALLLVLAFFASAGLWLLLEAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VYVGAV+V FLF++MMLDI++ R + GF F G+L L++ MV + + Sbjct: 61 VYVGAVMVLFLFVVMMLDINL----ARLREGFWKWFPFGLLLG-LVMSIEMAMVLTGKQF 115 Query: 119 --GELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 EL + +N + +G+++YT+Y Y E++ ILL++++ AI L LR R + K Sbjct: 116 GANELPAPAARAADYSNTKELGRLIYTEYVYAFELAAVILLVAIVAAIALTLRQRGESKS 175 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 D++KQ+ ++ I +V + S K Sbjct: 176 MDVAKQVAVKREDRIRIVSMASEK 199 >gi|206560694|ref|YP_002231459.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia J2315] gi|198036736|emb|CAR52636.1| NADH dehydrogenase I chain J [Burkholderia cenocepacia J2315] Length = 216 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116 Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KR Sbjct: 117 THTVHAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 Q +S Q++ ++ + +VK+++ K Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEADK 200 >gi|107023179|ref|YP_621506.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia AU 1054] gi|116690261|ref|YP_835884.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia HI2424] gi|170733600|ref|YP_001765547.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia MC0-3] gi|105893368|gb|ABF76533.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia AU 1054] gi|116648350|gb|ABK08991.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia HI2424] gi|169816842|gb|ACA91425.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia cenocepacia MC0-3] Length = 216 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116 Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KR Sbjct: 117 THTVHAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 Q +S Q++ ++ + +VK+++ K Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEADK 200 >gi|253996964|ref|YP_003049028.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera mobilis JLW8] gi|253983643|gb|ACT48501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera mobilis JLW8] Length = 226 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/199 (37%), Positives = 120/199 (60%), Gaps = 12/199 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + FY + + +I+ V+T RNP+Y+ L+ AF AAG++LLL AEF+A+ ++VYV Sbjct: 9 QDIVFYTLATILLIAGLRVITTRNPVYAALYLVLAFFTAAGIWLLLEAEFLAIALVLVYV 68 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAE--LIVCASNFMVFS 116 GAV+V FLF++MMLDI+++ + + GF + + G++A E ++V A NF V Sbjct: 69 GAVMVLFLFVVMMLDINLD----KLREGFWKALPVALPVGGLMAVEMVMVVGARNFGVDV 124 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + N E +G+VLYT Y E++ +LL++++ AI L LR RRD K D Sbjct: 125 VAAPPAHPADYSNTAE-LGRVLYTDYLLSFELASVVLLVAIVAAIALTLRDRRDSKSMDP 183 Query: 177 SKQLESNPDNSIVMVKVKS 195 +KQ+ + I +VK+++ Sbjct: 184 AKQVLVKKADRIRIVKMEA 202 >gi|53718856|ref|YP_107842.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei K96243] gi|53725806|ref|YP_103425.1| NADH dehydrogenase subunit J [Burkholderia mallei ATCC 23344] gi|67642183|ref|ZP_00440943.1| NADH dehydrogenase subunit J [Burkholderia mallei GB8 horse 4] gi|76809961|ref|YP_332853.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1710b] gi|121601517|ref|YP_992478.1| NADH dehydrogenase subunit J [Burkholderia mallei SAVP1] gi|124383891|ref|YP_001026719.1| NADH dehydrogenase subunit J [Burkholderia mallei NCTC 10229] gi|126440562|ref|YP_001058347.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 668] gi|126449514|ref|YP_001079996.1| NADH dehydrogenase subunit J [Burkholderia mallei NCTC 10247] gi|126453874|ref|YP_001065586.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106a] gi|167000359|ref|ZP_02266177.1| NADH dehydrogenase subunit J [Burkholderia mallei PRL-20] gi|167718854|ref|ZP_02402090.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei DM98] gi|167737862|ref|ZP_02410636.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 14] gi|167815045|ref|ZP_02446725.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 91] gi|167823461|ref|ZP_02454932.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 9] gi|167845013|ref|ZP_02470521.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei B7210] gi|167910236|ref|ZP_02497327.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 112] gi|226195411|ref|ZP_03791000.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei Pakistan 9] gi|242315732|ref|ZP_04814748.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106b] gi|254175409|ref|ZP_04882069.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 10399] gi|254190541|ref|ZP_04897048.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei Pasteur 52237] gi|254194999|ref|ZP_04901428.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei S13] gi|254202101|ref|ZP_04908464.1| NADH dehydrogenase I, J subunit [Burkholderia mallei FMH] gi|254207431|ref|ZP_04913781.1| NADH dehydrogenase I, J subunit [Burkholderia mallei JHU] gi|254258350|ref|ZP_04949404.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 1710a] gi|254298542|ref|ZP_04965994.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 406e] gi|254359853|ref|ZP_04976123.1| NADH dehydrogenase I, J subunit [Burkholderia mallei 2002721280] gi|52209270|emb|CAH35215.1| NADH dehydrogenase I chain J [Burkholderia pseudomallei K96243] gi|52429229|gb|AAU49822.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 23344] gi|76579414|gb|ABA48889.1| NADH dehydrogenase I chain J [Burkholderia pseudomallei 1710b] gi|121230327|gb|ABM52845.1| NADH dehydrogenase I, J subunit [Burkholderia mallei SAVP1] gi|124291911|gb|ABN01180.1| NADH dehydrogenase I, J subunit [Burkholderia mallei NCTC 10229] gi|126220055|gb|ABN83561.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 668] gi|126227516|gb|ABN91056.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 1106a] gi|126242384|gb|ABO05477.1| NADH dehydrogenase I, J subunit [Burkholderia mallei NCTC 10247] gi|147746348|gb|EDK53425.1| NADH dehydrogenase I, J subunit [Burkholderia mallei FMH] gi|147751325|gb|EDK58392.1| NADH dehydrogenase I, J subunit [Burkholderia mallei JHU] gi|148029093|gb|EDK86998.1| NADH dehydrogenase I, J subunit [Burkholderia mallei 2002721280] gi|157808368|gb|EDO85538.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 406e] gi|157938216|gb|EDO93886.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei Pasteur 52237] gi|160696453|gb|EDP86423.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 10399] gi|169651747|gb|EDS84440.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei S13] gi|225932613|gb|EEH28611.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei Pakistan 9] gi|238523279|gb|EEP86718.1| NADH dehydrogenase subunit J [Burkholderia mallei GB8 horse 4] gi|242138971|gb|EES25373.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106b] gi|243063693|gb|EES45879.1| NADH dehydrogenase subunit J [Burkholderia mallei PRL-20] gi|254217039|gb|EET06423.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 1710a] Length = 218 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 124/201 (61%), Gaps = 4/201 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLD++I+V KR + +G ++ LI+ S Sbjct: 61 VYVGAVMVLFLFVVMMLDVNIDVLRRDFKRFVPMATAVGAIIVVETALILWRGYGATASP 120 Query: 118 EGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 +++ G N + IGKV+YT Y + EI+G +LL+++I A+ L + +D KRQ + Sbjct: 121 VRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSKRQRV 180 Query: 177 SKQLESNPDNSIVMVKVKSGK 197 S+Q++ ++ + +VK+ + K Sbjct: 181 SEQVKVRREDRVRLVKMPADK 201 >gi|78067037|ref|YP_369806.1| NADH dehydrogenase subunit J [Burkholderia sp. 383] gi|77967782|gb|ABB09162.1| NADH dehydrogenase subunit J [Burkholderia sp. 383] Length = 216 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116 Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KR Sbjct: 117 TQTVHAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 Q +S Q++ ++ + +VK+++ K Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEAEK 200 >gi|172061200|ref|YP_001808852.1| NADH dehydrogenase subunit J [Burkholderia ambifaria MC40-6] gi|171993717|gb|ACB64636.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia ambifaria MC40-6] Length = 216 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVVETALILWRGYGD 116 Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KR Sbjct: 117 THAVHAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 Q +S Q++ ++ + +VK+++ K Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEAEK 200 >gi|294083720|ref|YP_003550477.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663292|gb|ADE38393.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Puniceispirillum marinum IMCC1322] Length = 201 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 90/198 (45%), Positives = 126/198 (63%), Gaps = 10/198 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++LFFYLF+ + + S+F+VV +NP+YSV LI +F NAAGLF+L+GAEF+AM+ +VVYV Sbjct: 3 EALFFYLFAGIMLASAFMVVISKNPVYSVLFLILSFFNAAGLFVLIGAEFLAMLLVVVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPR---KKRGFLGSFFIGILAAELIVCASNFMVFSAE-G 119 GAV V FLF++MMLDI+ AE R +K LG GIL EL+ A Sbjct: 63 GAVAVLFLFVVMMLDINF--AEMRAGFQKYLPLGLIVGGILVFELVAAMYGDAFKGATLP 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 E S + N +G VLYT+Y Y +++G ILL++MIGAI L +RHR ++RQ ++ Q Sbjct: 121 EASEI----PNTTRLGGVLYTKYIYLFQVAGLILLVAMIGAISLTMRHRPGVRRQVVANQ 176 Query: 180 LESNPDNSIVMVKVKSGK 197 D ++ +V V GK Sbjct: 177 NMRRRDETVEVVSVPVGK 194 >gi|163793196|ref|ZP_02187172.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199] gi|159181842|gb|EDP66354.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199] Length = 204 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 89/209 (42%), Positives = 131/209 (62%), Gaps = 15/209 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+Q+L FYLF+ +A+ S +V+T RNP++SV LI AF NAAGLF+L+GAEF+AMI +V Sbjct: 1 MVVQALVFYLFAAVAVASGAMVITSRNPVHSVLFLILAFFNAAGLFVLMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIG-------ILAAELIVCASNF 112 VYVGAV V FLF++MMLDI+ +E+ ++GF+ +G + LI A Sbjct: 61 VYVGAVAVLFLFVVMMLDINFVEL-----RQGFIRYVPVGAAIGLVLLAELLLITGAWTV 115 Query: 113 M--VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + +A G + N +G +LYT+Y Y + +G ILL++MIGAIVL LR R Sbjct: 116 APGIPNAMGAVIPPAADVTNTHALGGLLYTRYVYLFQAAGLILLIAMIGAIVLTLRSREG 175 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGKGI 199 ++RQ I Q ++++ ++KV G G+ Sbjct: 176 VRRQSILVQNARRREDAVEVMKVTRGGGV 204 >gi|254251870|ref|ZP_04945188.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia dolosa AUO158] gi|124894479|gb|EAY68359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia dolosa AUO158] Length = 216 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 127/204 (62%), Gaps = 11/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116 Query: 121 ------LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++ +G +N IGKV+YT Y + EI+G +LL+++I AI L + +D KR Sbjct: 117 THTVHAMTSAATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTAQKGKDSKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 Q +S+Q++ ++ + +VK+++ K Sbjct: 177 QRVSEQVKVRRNDRVRLVKMEADK 200 >gi|134283969|ref|ZP_01770665.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 305] gi|167893554|ref|ZP_02480956.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 7894] gi|167902000|ref|ZP_02489205.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei NCTC 13177] gi|167918269|ref|ZP_02505360.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei BCC215] gi|217420305|ref|ZP_03451811.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 576] gi|237811591|ref|YP_002896042.1| NADH dehydrogenase subunit j [Burkholderia pseudomallei MSHR346] gi|254181178|ref|ZP_04887775.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 1655] gi|134244758|gb|EBA44856.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 305] gi|184211716|gb|EDU08759.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 1655] gi|217397609|gb|EEC37625.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 576] gi|237502691|gb|ACQ95009.1| NADH dehydrogenase subunit j [Burkholderia pseudomallei MSHR346] Length = 218 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 124/201 (61%), Gaps = 4/201 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLD++I+V KR + +G ++ LI+ S Sbjct: 61 VYVGAVMVLFLFVVMMLDVNIDVLRRDFKRFVPMATAVGAIIVVETALILWRGYGATASP 120 Query: 118 EGELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 +++ G N + IGKV+YT Y + EI+G +LL+++I A+ L + +D KRQ + Sbjct: 121 VRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSKRQRV 180 Query: 177 SKQLESNPDNSIVMVKVKSGK 197 S+Q++ ++ + +VK+ + K Sbjct: 181 SEQVKVRREDRVRLVKMPAEK 201 >gi|221199665|ref|ZP_03572709.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2M] gi|221205435|ref|ZP_03578450.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2] gi|221174273|gb|EEE06705.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2] gi|221180950|gb|EEE13353.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2M] Length = 216 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 122/204 (59%), Gaps = 11/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDFL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116 Query: 121 -------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 S +N IGKV+YT Y + EI+G +LL+++I AI L +D KR Sbjct: 117 THAVHAMTSGATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTSHKGKDSKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 Q +S Q++ D+ + +VK+++ K Sbjct: 177 QRVSDQVKVRRDDRVRLVKMEADK 200 >gi|254247666|ref|ZP_04940987.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Burkholderia cenocepacia PC184] gi|124872442|gb|EAY64158.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Burkholderia cenocepacia PC184] Length = 216 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 11/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVPFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYL----RRDFKRFVPMATVVGAIIVIETALILWRGYGD 116 Query: 121 LSRL-------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KR Sbjct: 117 THTVHAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKR 176 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 Q +S Q++ ++ + +VK+++ K Sbjct: 177 QRVSDQVKVRRNDRVRLVKMEADK 200 >gi|238028134|ref|YP_002912365.1| NADH dehydrogenase subunit J [Burkholderia glumae BGR1] gi|237877328|gb|ACR29661.1| Hypothetical protein bglu_1g25850 [Burkholderia glumae BGR1] Length = 220 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 125/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + +IS+ V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVISALKVITARNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V +R F + + +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINVDVL----RRDFRRFVPMATVVGAIIVVETALILWRGYGA 116 Query: 121 LS---RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + R V G +N IGKV+YT Y + EI+G +LL+++I A+ L + K Sbjct: 117 TASPVRDVASGALANMSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAVSLTAGKGKYRK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ++S+Q+ ++ + +VK+ + K Sbjct: 177 RQNVSEQIRVRREDRVRLVKMAAEK 201 >gi|171463535|ref|YP_001797648.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193073|gb|ACB44034.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 215 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/193 (37%), Positives = 124/193 (64%), Gaps = 2/193 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++FFY F+ + IIS+ V+T RNP+++ L+ AF A+GL++LL AEF+++ ++VYVG Sbjct: 10 AVFFYGFAGLLIISALRVITARNPVHAALFLVLAFFCASGLWMLLKAEFLSLALILVYVG 69 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL-IVCASNFMVFSAEGELS 122 AV+V FLF++MMLD+D+E K+ +F +G ++ EL IV +F+ +A + Sbjct: 70 AVMVLFLFVVMMLDLDLEHLRRDFKKFLPVAFLMGAVIVLELSIVIIRSFIGTNAPVQPM 129 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 NN + +G +++ YAY E++G ILL+++I A+ L LR+R+D K Q+I +Q+ Sbjct: 130 PEEVMANNTQALGMLIFVDYAYAFEVAGVILLVAIIAAVALTLRNRKDSKSQNIHEQVNV 189 Query: 183 NPDNSIVMVKVKS 195 + +VK+ S Sbjct: 190 VAAERMRIVKMGS 202 >gi|304321907|ref|YP_003855550.1| NADH dehydrogenase subunit J [Parvularcula bermudensis HTCC2503] gi|303300809|gb|ADM10408.1| NADH dehydrogenase subunit J [Parvularcula bermudensis HTCC2503] Length = 200 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 122/197 (61%), Gaps = 9/197 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F +F+ ++ V+ RNP++SV LI AF++ AGLF+L+GAE++A + +VVYVGAV Sbjct: 8 FSIFATAVVVWGLGVIFARNPVHSVMCLIMAFISTAGLFVLIGAEYLAFLLVVVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF- 126 V FLF++MMLDID AE R G+ G++ A +V MV S G + Sbjct: 68 VLFLFVVMMLDIDF--AELRA--GYARYLPFGVVVAAALVIEIGVMVTSWSGAPAAQAPV 123 Query: 127 ----KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 NN E +G VLYT+Y + +I+G +LL++MIGAI+L R R+ IK QD+S+Q+ Sbjct: 124 AASDGPNNAEQLGMVLYTEYVHFFQIAGLVLLVAMIGAILLTFRQRQGIKTQDVSRQVGR 183 Query: 183 NPDNSIVMVKVKSGKGI 199 ++ + +V V +GKGI Sbjct: 184 RREDGVEVVSVPTGKGI 200 >gi|145589225|ref|YP_001155822.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047631|gb|ABP34258.1| NADH dehydrogenase subunit J [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 215 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 122/193 (63%), Gaps = 2/193 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++FFY F+ + +IS+ V+T RNP+++ L+ AF A+GL++LL AEF+++ ++VYVG Sbjct: 10 AVFFYGFAGLLVISALRVITARNPVHAALFLVLAFFCASGLWMLLKAEFLSLALILVYVG 69 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL-IVCASNFMVFSAEGELS 122 AV+V FLF++MMLD+DIE K+ +F +G ++ EL IV +F+ + Sbjct: 70 AVMVLFLFVVMMLDLDIEHLRRDFKKFLPVAFLMGTVIVLELSIVIIRSFIGTDTPVQPM 129 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 NN + +G +++ Y Y EI+G ILL+++I A+ L LR+R+D K Q+I +Q+ Sbjct: 130 PEEMMANNTQALGMLIFVDYVYAFEIAGVILLVAIIAAVALTLRNRKDSKSQNIHEQVNV 189 Query: 183 NPDNSIVMVKVKS 195 + + +VK+ S Sbjct: 190 VAADRMRIVKMDS 202 >gi|319794659|ref|YP_004156299.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax paradoxus EPS] gi|315597122|gb|ADU38188.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax paradoxus EPS] Length = 221 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 119/198 (60%), Gaps = 10/198 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FYLF+ + + ++F V+T RNP+Y+ L+ AF A+ ++LLL AEF+A+ ++ Sbjct: 1 MDVKTGLFYLFAAVLLFAAFRVITARNPVYAALYLVLAFFQASAIWLLLRAEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI------VCASNFMV 114 VYVGAV+V FLF++MMLDI+++ ++GF F + LI V F + Sbjct: 61 VYVGAVMVLFLFVVMMLDINVD----SLRQGFWKHFPLAAGVGALIALEMAAVLMGGFRL 116 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 A ++ +N +GK+LY++Y YPLEI+ ILL+++I AI L LR R+D K Sbjct: 117 GEAPRAMAVTSPNTSNTMELGKLLYSEYLYPLEIAAVILLVAIIAAIALTLRTRKDSKYT 176 Query: 175 DISKQLESNPDNSIVMVK 192 + S Q+ + + +V+ Sbjct: 177 NPSDQVRVKARDRVRIVQ 194 >gi|288942125|ref|YP_003444365.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Allochromatium vinosum DSM 180] gi|288897497|gb|ADC63333.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Allochromatium vinosum DSM 180] Length = 212 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 117/192 (60%), Gaps = 14/192 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + L FY+F+ + + ++ +V+T +NP++SV L+ AFV++A L++LL AEF+ ++ ++VYV Sbjct: 3 EKLIFYVFALITVWAAVMVITRKNPVHSVLFLVLAFVSSAALWVLLEAEFLGIVLILVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAE--LIVCASNFMVFS 116 GAV+V FLF++MMLDID+ + GF L I+A E LIV NF Sbjct: 63 GAVMVLFLFVVMMLDIDLATI----RAGFVQNLPLAGLIAAIMAVEILLIVGPGNFG-LD 117 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 A + L + +N +G +LY+ Y YP+EI+ ILLL+++ AI L LR R D K D Sbjct: 118 AFPKPEPLGAEVSNTRELGLLLYSVYIYPVEIAAVILLLAIVAAIRLTLRRRPDNKYVDP 177 Query: 177 SKQ--LESNPDN 186 ++Q + PD Sbjct: 178 ARQVRVRKGPDR 189 >gi|153871401|ref|ZP_02000582.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Beggiatoa sp. PS] gi|152072135|gb|EDN69420.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Beggiatoa sp. PS] Length = 195 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/194 (38%), Positives = 114/194 (58%), Gaps = 14/194 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ + I ++ V+TV+NP+++ L+ AF ++A ++LLL AEF+A+ ++VYVGAV+ Sbjct: 6 FYLFALILIFAASRVITVKNPVHAALFLVLAFFSSAAIWLLLQAEFLAIALILVYVGAVM 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG------ILAAELIVCASNFMVFSAEGEL 121 V FLF++MMLDI+ + + GF+ I IL ++V + V E Sbjct: 66 VLFLFVVMMLDINFT----QLREGFVRHLPIAGIVGALILLEMVLVVGTWHQVPIPEIAA 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 L N E +G+VLYT+Y YP EI+ ILL++MI AI L LR RR K Q +Q+ Sbjct: 122 DAL----PNTEALGQVLYTEYVYPFEIAAVILLVAMIAAIALTLRPRRQTKTQKPEQQVN 177 Query: 182 SNPDNSIVMVKVKS 195 + +VK+ + Sbjct: 178 VRRSERVRLVKMPA 191 >gi|161524213|ref|YP_001579225.1| NADH dehydrogenase subunit J [Burkholderia multivorans ATCC 17616] gi|189351030|ref|YP_001946658.1| NADH dehydrogenase subunit J [Burkholderia multivorans ATCC 17616] gi|221211744|ref|ZP_03584723.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD1] gi|160341642|gb|ABX14728.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia multivorans ATCC 17616] gi|189335052|dbj|BAG44122.1| NADH dehydrogenase I chain J [Burkholderia multivorans ATCC 17616] gi|221169105|gb|EEE01573.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD1] Length = 216 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G ++ LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDFLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHAV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 S +N IGKV+YT Y + EI+G +LL+++I AI L +D KRQ +S Sbjct: 121 HAMTSGATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTSHKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ ++ + +VK+++ K Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200 >gi|68171482|ref|ZP_00544866.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia chaffeensis str. Sapulpa] gi|88658094|ref|YP_507364.1| NADH dehydrogenase I, J subunit [Ehrlichia chaffeensis str. Arkansas] gi|67999088|gb|EAM85755.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia chaffeensis str. Sapulpa] gi|88599551|gb|ABD45020.1| NADH dehydrogenase I, J subunit [Ehrlichia chaffeensis str. Arkansas] Length = 200 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 118/192 (61%), Gaps = 7/192 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+ F+ + ++SS VV V NP+YSV LI F ++ LF+LLGAE +AM+ ++VYVGAV Sbjct: 6 FHFFAVLIVLSSISVVYVSNPVYSVLFLILTFFISSTLFILLGAELIAMLVIIVYVGAVA 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-FSAEGEL-SRLV 125 V FLF++MMLDI+ R K GF IG+L ++ F++ SA EL + V Sbjct: 66 VLFLFVVMMLDIN----YSRLKSGFTKYLAIGLLCGMILFVNIVFVIKQSATTELVTGSV 121 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQLESNP 184 +NV IG ++YT+Y Y +SG +LL+S+IG++VL LR + ++ RQ + Q+ + Sbjct: 122 SYVSNVIAIGNLIYTKYMYVFHLSGILLLISIIGSLVLTLRTKNGNVYRQSVGAQVNRSS 181 Query: 185 DNSIVMVKVKSG 196 V VKV+ G Sbjct: 182 TVKYVNVKVRQG 193 >gi|261856541|ref|YP_003263824.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Halothiobacillus neapolitanus c2] gi|261837010|gb|ACX96777.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Halothiobacillus neapolitanus c2] Length = 219 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 123/205 (60%), Gaps = 10/205 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+F+ A+IS+ VVTV+NP+++ L+ F + ++L+ AEF+ ++ L+ Sbjct: 1 MTLYQFLFYVFASSAVISAIRVVTVKNPVHAALFLVLTFFTTSLTWILMEAEFLGIVLLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI++ P ++ GF+ + +G+ A ++V +V S Sbjct: 61 VYVGAVMVLFLFVVMMLDINL---APLRE-GFVRNLPVGVFVALVMVIELGLIVGSHAFG 116 Query: 121 LSRLVFK------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 L+ +N +G VLYT+Y YP EI+ FILL++++ AI L R R + Q Sbjct: 117 LANYPAPTAAAAGTSNTLALGSVLYTEYVYPFEIAAFILLVAIVAAISLAHRKREGVLYQ 176 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 +I +Q++ N D+ + MVK+ S + Sbjct: 177 NIDQQVKVNRDDRVRMVKMVSSTPV 201 >gi|170748468|ref|YP_001754728.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium radiotolerans JCM 2831] gi|170654990|gb|ACB24045.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium radiotolerans JCM 2831] Length = 206 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 122/195 (62%), Gaps = 13/195 (6%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + + S F+V+ RNP+ SV LI AFVNAAGLF+L+GAEF+AMI +VVYVGAV V FLF+ Sbjct: 14 ITVASGFMVIASRNPVASVLFLILAFVNAAGLFVLMGAEFLAMILVVVYVGAVAVLFLFV 73 Query: 74 IMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSA--EGELSRLVF 126 +MMLD+D AE R+ GF +G+ I EL++ ++ + + L + Sbjct: 74 VMMLDVDF--AELRQ--GFQQYLPIGALIGAIFLVELLLVVGSWSIDPGLVQAPLGNVAA 129 Query: 127 KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N N + +G+V+YT YAY +++G ILL++MIGAIVL LR R +KRQ I+ Q Sbjct: 130 AENLTNAQALGRVIYTDYAYFFQLAGLILLVAMIGAIVLTLRDRPGVKRQSIAVQNARTQ 189 Query: 185 DNSIVMVKVKSGKGI 199 ++ KV S +G+ Sbjct: 190 AMAVETRKVPSRQGV 204 >gi|171058194|ref|YP_001790543.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leptothrix cholodnii SP-6] gi|170775639|gb|ACB33778.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leptothrix cholodnii SP-6] Length = 216 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 124/205 (60%), Gaps = 25/205 (12%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+FS + + ++F V+T R+P+++ L+ AF A+ +++LL AEF+A+ ++ Sbjct: 1 MDTTTALFYVFSAVLLFAAFRVITARSPVHAALYLVLAFFTASCVWMLLQAEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELIVC------- 108 VYVGAV+V FLF++MMLDI+++V ++GF F + I+A E+ V Sbjct: 61 VYVGAVMVLFLFVVMMLDINVDVL----RQGFWSHFPVAATVGVIIALEMAVVLLRGFNL 116 Query: 109 -ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + M +AEG N + +G LYT Y YPLEI+ ILL+++I AI L LR Sbjct: 117 PIAKAMPGAAEGV--------PNTKLLGIELYTDYLYPLEIAAVILLVAIIAAIALTLRR 168 Query: 168 RRDIKRQDISKQLESNPDNSIVMVK 192 R+D+K Q+ ++Q+++ + + +VK Sbjct: 169 RKDVKGQNPAEQVKAKKADRLRIVK 193 >gi|187477550|ref|YP_785574.1| NADH dehydrogenase I subunit J [Bordetella avium 197N] gi|115422136|emb|CAJ48660.1| NADH dehydrogenase I chain J [Bordetella avium 197N] Length = 210 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/198 (37%), Positives = 124/198 (62%), Gaps = 7/198 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M S+ FYL +F+ ++++F V+T R+P+ +V LI AF NAA L++LLGAEF+A++ ++ Sbjct: 1 MTFTSVLFYLLAFVLVVAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI I+ + G +G++ ++V F++F+ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDIRID----HLRHGLKTYLPLGLIIGGIMVVEMGFVLFTTWGD 116 Query: 121 LS-RLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 ++V G NN +G+ +YTQY + +E+ +LL+ M+ AI L LR RRD K D + Sbjct: 117 AGPQVVMAGDYNNARALGEAMYTQYVFGVEVGAALLLVGMVAAIALTLRRRRDAKYNDPA 176 Query: 178 KQLESNPDNSIVMVKVKS 195 + + MVK+++ Sbjct: 177 AAVRVRAKDRFRMVKMQA 194 >gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana) tropicalis] Length = 1458 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 104/173 (60%), Gaps = 16/173 (9%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+ RNP+++V SLI AF AAG++LLL AEF+ + ++ Sbjct: 1277 MDAKTGFFYLFSVVLLFAAFRVIMARNPVHAVLSLILAFSQAAGIWLLLKAEFLGITLVL 1336 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI------VCASNFMV 114 VY+GAV+V FLF++MMLDI I+ ++GF F + L +I V F Sbjct: 1337 VYLGAVMVLFLFVVMMLDIRIDSV----RQGFWKHFPLAALVGAIITFEMALVLMDGFRS 1392 Query: 115 FSAEGELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +S +V +N +GK+LYTQY YP+EI+ ILL++MI AI Sbjct: 1393 IDEPKAISAVVDAAGQAVPYSNTRVLGKLLYTQYLYPVEIAAVILLVAMIAAI 1445 >gi|186476755|ref|YP_001858225.1| NADH dehydrogenase subunit J [Burkholderia phymatum STM815] gi|184193214|gb|ACC71179.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia phymatum STM815] Length = 222 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 112/189 (59%), Gaps = 14/189 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + +S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFALLLTVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDVLRRDFKRFVPMATVVG----AIIVIETALILWHGYGA 116 Query: 121 LSRLV----------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + V +N IGK++YT Y + E++G +LL+++I AI L RH +D Sbjct: 117 TVQPVRDTTAAVAGAADWSNTRLIGKIIYTDYIFAFEVAGLVLLVAIIAAIALTTRHGKD 176 Query: 171 IKRQDISKQ 179 KRQ +S Q Sbjct: 177 SKRQRVSDQ 185 >gi|330817783|ref|YP_004361488.1| hypothetical protein bgla_1g29200 [Burkholderia gladioli BSR3] gi|327370176|gb|AEA61532.1| hypothetical protein bgla_1g29200 [Burkholderia gladioli BSR3] Length = 220 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 118/200 (59%), Gaps = 12/200 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + +IS V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVISGLKVITARNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+ +V +R F + + +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINTDVL----RRDFRRFVPMATVVGAIIVVETALILWRGYGA 116 Query: 121 LS---RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 S R + G N + IGKV+YT Y + EI+G +LL+++I A+ L ++ K Sbjct: 117 TSSPVREIASGALANMTNTQLIGKVIYTDYIFAFEIAGLVLLVAIIAAVSLTSGRGKERK 176 Query: 173 RQDISKQLESNPDNSIVMVK 192 RQ +S Q+ + + +VK Sbjct: 177 RQRVSDQVSVRRQDRVRLVK 196 >gi|73667097|ref|YP_303113.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia canis str. Jake] gi|72394238|gb|AAZ68515.1| NADH dehydrogenase subunit J [Ehrlichia canis str. Jake] Length = 200 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 7/197 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F+ F+ + ++SS VV + NP+YSV LI F ++ LF+LLGAE +AM+ ++VY Sbjct: 1 MVYFLFHFFAALIVLSSVAVVYISNPVYSVLFLILTFFISSTLFILLGAELIAMLVIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-SAEGEL 121 VGAV V FLF++MMLDI+ R K F IG+L ++ F++ SA EL Sbjct: 61 VGAVAVLFLFVVMMLDIN----YSRFKNVFTKYLAIGLLCGVILFVNIVFIIRQSATTEL 116 Query: 122 -SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQ 179 + V +NV IG ++YT+Y Y +SG +LL+S+IGA+VL LR + + RQ+I+ Q Sbjct: 117 VTESVQYVSNVVAIGNLIYTEYMYIFHLSGILLLISIIGALVLTLRAKNSSVHRQNINMQ 176 Query: 180 LESNPDNSIVMVKVKSG 196 + V VKVK G Sbjct: 177 INRPSSIKYVSVKVKEG 193 >gi|144900795|emb|CAM77659.1| NADH-quinone oxidoreductase chain 10 [Magnetospirillum gryphiswaldense MSR-1] Length = 203 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 126/201 (62%), Gaps = 7/201 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY+F+ +A+ S +V++ RNP++SV LI F NAAGLFLLLGAEF+AM+ +VVYVG Sbjct: 4 ALIFYMFAGLAVASGVMVISARNPVHSVLFLILCFFNAAGLFLLLGAEFLAMVLVVVYVG 63 Query: 65 AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122 AV V FLF++MMLDI+ + + E + G+ +L EL V + F+ + E Sbjct: 64 AVAVMFLFVVMMLDINFLRLREGVAQYLPTGAVIGLVLLVELAVMFGGW-AFAPDVEALL 122 Query: 123 ----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 V + N E +G+++YT+Y Y + SG +LL++M+GAI+L R R +++Q I Sbjct: 123 AAPIPAVSEMTNTEALGRLIYTKYVYLFQASGVVLLVAMVGAILLTHRSRTGVRKQKIYD 182 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ NS+ + KV +G GI Sbjct: 183 QVGRTAANSVEIRKVSTGGGI 203 >gi|114797370|ref|YP_760458.1| NADH-quinone oxidoreductase subunit J [Hyphomonas neptunium ATCC 15444] gi|114737544|gb|ABI75669.1| NADH-quinone oxidoreductase, J subunit [Hyphomonas neptunium ATCC 15444] Length = 197 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/199 (41%), Positives = 123/199 (61%), Gaps = 4/199 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L + + ++++ V+ RNP++SV LI F +AAGL +L+GAEF+AM+ +VVY Sbjct: 1 MALIAFSLIAAIVVLAAMFVIAARNPVHSVLWLILTFFSAAGLLVLIGAEFLAMLLVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL-IVCASNFMVFSAEGE 120 VGAV V FLF++MMLD+D + R + + +G IL AEL +V + + EG Sbjct: 61 VGAVAVLFLFVVMMLDVDFVELKQGTLRYWPFALLVGVILLAELALVSVAGDAI--PEGN 118 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 ++ N E IG V+YT Y ++SG +LL++M+GAIVL LRHR IKRQDI+KQ Sbjct: 119 MNASPNAPTNAEAIGYVMYTDYLLLFQLSGIVLLIAMVGAIVLTLRHRPHIKRQDIAKQT 178 Query: 181 ESNPDNSIVMVKVKSGKGI 199 +++ + G+GI Sbjct: 179 GRRRVDAVDLKDPTPGQGI 197 >gi|239816474|ref|YP_002945384.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax paradoxus S110] gi|239803051|gb|ACS20118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax paradoxus S110] Length = 218 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/197 (35%), Positives = 119/197 (60%), Gaps = 9/197 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FYLF+ + + ++F V+T RNP+Y+ L+ AF A+ ++LLL AEF+A+ ++ Sbjct: 1 MDVKTGLFYLFAAVLLFAAFRVITARNPVYAALYLVLAFFQASAIWLLLRAEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAELIVCASNFMVF 115 VYVGAV+V FLF++MMLDI+++ ++GF F + ++A E+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINVD----GLRQGFWKHFPLAAGVGALIALEMAAVLMGGFRL 116 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 A + G+N +GK+LY++Y YPLEI+ ILL++++ AI L LR R+D K + Sbjct: 117 EAPRAGAAAAAHGSNTLELGKLLYSEYLYPLEIAAVILLVAIVAAIALTLRTRKDSKYVN 176 Query: 176 ISKQLESNPDNSIVMVK 192 S Q+ + + +V+ Sbjct: 177 PSDQVRVKARDRVRIVQ 193 >gi|300311104|ref|YP_003775196.1| transmembrane NADH dehydrogenase I subunit J [Herbaspirillum seropedicae SmR1] gi|300073889|gb|ADJ63288.1| transmembrane NADH dehydrogenase I (Chain J) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 125/199 (62%), Gaps = 8/199 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FY+F+ + +I++ V+T RNP+++ L+ +F +AAG+++LL AEF+A++ ++ Sbjct: 1 MEFKTVLFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV----FS 116 VYVGAV+V FLF++MMLDI+++ + + GF G F + +IV ++ ++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINMD----KLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWT 116 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 E ++ + +GK+++T+Y Y EI+ ILL++++ A+ L LR R+D K D Sbjct: 117 PETQVPAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDP 176 Query: 177 SKQLESNPDNSIVMVKVKS 195 +K ++ + + +V +K+ Sbjct: 177 AKAVKVKASDRVRLVSMKA 195 >gi|296136697|ref|YP_003643939.1| hypothetical protein Tint_2259 [Thiomonas intermedia K12] gi|295796819|gb|ADG31609.1| hypothetical protein Tint_2259 [Thiomonas intermedia K12] Length = 219 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 125/209 (59%), Gaps = 18/209 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYLFS + + ++ V+T RNP++S L+ AF + ++LLL AEF+A++ ++ Sbjct: 11 MDVQTILFYLFSAVLLFAALRVITARNPVHSALYLVLAFFQMSAIWLLLRAEFLAIVLVL 70 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFSAE 118 VYVGAV+V FLF++MMLDI+++ ++GF F + L LIV A+ M Sbjct: 71 VYVGAVMVLFLFVVMMLDINLD----SIRKGFWRYFPVAALVGVLIVLEMAAVLMQGFQI 126 Query: 119 GELSRLVFKG------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 G ++R G +N +G VLY+QY + +EI+ ILL+++I AI L LR Sbjct: 127 GGMTRAAQVGAAASADNPLTHLSNTRALGVVLYSQYLFAVEIAAVILLVAIIAAIALTLR 186 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKS 195 R+D++ S+Q+++ + + +V + + Sbjct: 187 RRKDVRHMPASEQIKARRADRVRLVSMPA 215 >gi|294340852|emb|CAZ89247.1| putative NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) (NDH-1, chain J) (NuoJ) [Thiomonas sp. 3As] Length = 209 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 125/209 (59%), Gaps = 18/209 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYLFS + + ++ V+T RNP++S L+ AF + ++LLL AEF+A++ ++ Sbjct: 1 MDVQTILFYLFSAVLLFAALRVITARNPVHSALYLVLAFFQMSAIWLLLRAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFSAE 118 VYVGAV+V FLF++MMLDI+++ ++GF F + L LIV A+ M Sbjct: 61 VYVGAVMVLFLFVVMMLDINLD----SIRKGFWRYFPVAALVGVLIVLEMAAVLMQGFQI 116 Query: 119 GELSRLVFKG------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 G ++R G +N +G VLY+QY + +EI+ ILL+++I AI L LR Sbjct: 117 GGMTRAAQVGAAASADNPLTHLSNTRALGVVLYSQYLFAVEIAAVILLVAIIAAIALTLR 176 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKS 195 R+D++ S+Q+++ + + +V + + Sbjct: 177 RRKDVRHMPASEQIKARRADRVRLVSMPA 205 >gi|34496405|ref|NP_900620.1| NADH-ubiquinone oxidoreductase, chain J [Chromobacterium violaceum ATCC 12472] gi|34102258|gb|AAQ58624.1| NADH-ubiquinone oxidoreductase, chain J [Chromobacterium violaceum ATCC 12472] Length = 214 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 122/205 (59%), Gaps = 10/205 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY+ S + + + VVT +NP+++ L+ AF +AG +LL+ +EF+A+ ++ Sbjct: 1 MNLTTVIFYVLSAILVFAGLRVVTAKNPVHAALYLVLAFFTSAGHWLLMESEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+IE + + GF + + ++V ++ S + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIE----KLREGFWKNLPVAATVGAIMVFEMALILVSPQAS 116 Query: 121 LSR------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 LS+ L +NV+ +G LYT Y P EI+ +LLL+MI AI L +R R+D K Sbjct: 117 LSQYKAAAPLAADFSNVKMLGSQLYTTYLLPFEIAAVVLLLAMIAAIGLTMRTRKDSKVI 176 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 D + Q++ ++ + +VK+ + K + Sbjct: 177 DPAVQVKVRREDRVRIVKMDAVKKV 201 >gi|9653241|ref|NP_062487.1| NADH dehydrogenase subunit 6 [Chondrus crispus] gi|1352589|sp|P48924|NU6M_CHOCR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1334488|emb|CAA87610.1| NADH dehydrogenase (ubiquinone), subunit 6 [Chondrus crispus] Length = 204 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/196 (40%), Positives = 111/196 (56%), Gaps = 23/196 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS A+ISS +V+ + N ++SV LI F N AGL LLLG EF + + ++VYVGA+ Sbjct: 8 FYLFSIFALISSLMVIGLTNAVHSVLFLILVFCNVAGLLLLLGPEFFSFMLIIVYVGAIA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V FLF++MML+I ++ F + IGIL ++ S F FS+ EL + F+ Sbjct: 68 VLFLFVVMMLNIKLK----STNISFSSLWPIGILT--FVILLSQF--FSSFYELDLVKFQ 119 Query: 128 G---------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 G N++ IGKVLYT + I G ILL++MIG IVL + R D+K Sbjct: 120 GKELFFISWANENSNLTNIKVIGKVLYTHFNLLFLICGLILLVAMIGVIVLTMHQRVDVK 179 Query: 173 RQDISKQLESNPDNSI 188 +Q I+ QL N I Sbjct: 180 KQQIALQLARTAPNVI 195 >gi|220934171|ref|YP_002513070.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thioalkalivibrio sp. HL-EbGR7] gi|219995481|gb|ACL72083.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thioalkalivibrio sp. HL-EbGR7] Length = 197 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 117/195 (60%), Gaps = 8/195 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ FY FS + + ++ ++TVRNP+++ L+ F +A L+++L AEF+ ++ ++VYV Sbjct: 4 EAFLFYFFSVILVGAAVAMITVRNPVHAALFLVLTFFTSAALWIMLEAEFLGIVLVLVYV 63 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSAEGE 120 GAV+V FLF++MMLDI++ R + GF+ +GI+ A +V ++ F E Sbjct: 64 GAVMVLFLFVVMMLDINLA----RMREGFIRFLPVGIVVAVAMVSVMTLVIVRHFHMEAP 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 R NN E +G++LYT+Y YP EI+ ILL++++ AI L +R R K D ++Q+ Sbjct: 120 -ERAGADYNNTEALGQILYTEYVYPFEIAAVILLVAIVAAIALTMRRRPGTKAIDPAQQV 178 Query: 181 ESNPDNSIVMVKVKS 195 + MV +KS Sbjct: 179 RITRKGRVRMVDMKS 193 >gi|297538947|ref|YP_003674716.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera sp. 301] gi|297258294|gb|ADI30139.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera sp. 301] Length = 217 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 121/201 (60%), Gaps = 16/201 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + FY + + + ++ V+T RNP+Y+ L+ AF AAG++LLL AEF+A+ ++VYV Sbjct: 9 QDIVFYTLAAVLLYAAISVITTRNPVYAALYLVLAFFTAAGIWLLLEAEFLAIALVLVYV 68 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAE--LIVCASNFMVFS 116 GAV+V FLF++MMLDI+++ + + GF + + G++A E +IV N F Sbjct: 69 GAVMVLFLFVVMMLDINLD----KLREGFWNALPVALPVGGLMAVEMVMIVGVRN---FG 121 Query: 117 AEGELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 A+ ++ + N +G+VLYT Y P E++ +LL++++ AI L LR R++ K Sbjct: 122 ADKVIAPPAHAADYSNTAELGRVLYTDYLLPFELASVVLLVAIVAAIALTLRDRKESKSV 181 Query: 175 DISKQLESNPDNSIVMVKVKS 195 D SKQ+ + I ++K+ + Sbjct: 182 DPSKQVLVKKADRIRILKMDA 202 >gi|49475649|ref|YP_033690.1| NADH dehydrogenase subunit J [Bartonella henselae str. Houston-1] gi|49238456|emb|CAF27684.1| NADH dehydrogenase I, J subunit [Bartonella henselae str. Houston-1] Length = 206 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 122/191 (63%), Gaps = 13/191 (6%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ +V+T RNP++SV LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF++MML Sbjct: 20 SAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFVVMML 79 Query: 78 DID-IEVAEPRKKRGFLGSFFIGILAAELIV--CASNF------MVFSAEGELSRLVFKG 128 D+D E+ + +G+ I+A ELIV S F V +L+ + Sbjct: 80 DVDFAELKSGTLRYAPIGALVGSIVAVELIVVFVGSRFSPVLRAHVMQPMPDLA----QK 135 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188 N + +G +LYT Y + +I+G ILL++MIGAI+L LRH+ +KRQ I+ Q+ +N+I Sbjct: 136 TNTQALGDILYTDYVFYFQIAGIILLVAMIGAIILTLRHKSGVKRQSIAVQVSRKVENAI 195 Query: 189 VMVKVKSGKGI 199 + +++SGKGI Sbjct: 196 EIKQIESGKGI 206 >gi|217970165|ref|YP_002355399.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thauera sp. MZ1T] gi|217507492|gb|ACK54503.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thauera sp. MZ1T] Length = 201 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 118/203 (58%), Gaps = 10/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY + + ++++ V+T RNP+++ L+ F NA GL+LLL AEF+A+ ++ Sbjct: 1 MEFKTFVFYFLAAIMVLAALRVITARNPVHAALFLVLTFFNAGGLWLLLQAEFLAVTLVM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL------IVCASNFMV 114 VYVGAV+V FLF++MMLDI+++ R + GF +G L L +V ++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINLD----RLREGFWSYLPVGALVGILMLVEMVMVLGGSYFG 116 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 A + + +N +G+VLYT Y Y E++ +LL++M+ A+ L LR R+ +K Sbjct: 117 LEAMPAPAPVAADYSNTRELGRVLYTDYVYAFELASLVLLVAMVSAVALTLRKRKGLKSI 176 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 S+Q+ + + +VK++S K Sbjct: 177 PPSEQVAVRREGRVELVKMQSEK 199 >gi|38638285|ref|NP_943690.1| NADH dehydrogenase subunit 6 [Chara vulgaris] gi|32966599|gb|AAP92182.1| NADH dehydrogenase subunit 6 [Chara vulgaris] Length = 200 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 108/185 (58%), Gaps = 11/185 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +FS +A++S +V+ RNP++SV LI F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFSIFSSIALVSGVMVIRARNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MML+I I E+ E + +G I E+ + N + ELS Sbjct: 62 IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGLIFLLEIFLVVDNDYIPILPTELSTT 121 Query: 125 VFK----------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 VF+ N+E +G +LYT Y Y +S ILL++MIGAIVL + +KRQ Sbjct: 122 VFQYTVYASKIQSWTNLETLGNLLYTTYFYLFLVSSLILLVAMIGAIVLTMHKTTQVKRQ 181 Query: 175 DISKQ 179 D+ +Q Sbjct: 182 DVFQQ 186 >gi|186920131|ref|YP_001874785.1| NADH dehydrogenase subunit 6 [Hemiselmis andersenii] gi|186461077|gb|ACC78239.1| NADH dehydrogenase subunit 6 [Hemiselmis andersenii] Length = 208 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 23/207 (11%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+++ F FS + + V+T +NPI+SV L+ F N +GL +LLG EF+A + L+VY Sbjct: 1 MEAILFLFFSSLTLTCGLFVITSKNPIHSVLFLVLVFFNVSGLLILLGVEFLAFLFLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG-----FLGSFFIGILAAELIVCASNF--MVF 115 VGA+ V FLFI+MML I I + R LG+ G L LIV S ++ Sbjct: 61 VGAIAVLFLFIVMMLSIKIPEYKLIIYRYIPIGVILGT---GFLCEILIVFESELSSLIV 117 Query: 116 SAEGELSRLVFKGN-------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 S G+L+ F N N+E VLYT YAY I+G ILL+SMIGAI Sbjct: 118 SPFGKLTFNTFYLNSITLWDVNVVPITNIEVFAGVLYTHYAYFFIIAGIILLVSMIGAIT 177 Query: 163 LMLRHRRDIKRQDISKQLESNPDNSIV 189 L L R DIKRQ I KQ++ +I+ Sbjct: 178 LTLHRRIDIKRQKIYKQVQKEFAKTII 204 >gi|256821524|ref|YP_003145487.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kangiella koreensis DSM 16069] gi|256795063|gb|ACV25719.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kangiella koreensis DSM 16069] Length = 226 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/198 (37%), Positives = 120/198 (60%), Gaps = 10/198 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+F+ + I+S+ VVTVRN + +V L+ F +AA L++LL AEF+A+ ++ Sbjct: 1 MTAEQIVFYIFATLTIVSALGVVTVRNSVQAVLCLVLTFFSAAVLWMLLEAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VFS 116 VYVGAV+V FLF++MMLD+D +GF +GIL A ++ ++ VF Sbjct: 61 VYVGAVMVLFLFVVMMLDVDF----ASLNQGFTRYVPLGILVAIGLLIGLYWVLRGEVFG 116 Query: 117 AEG--ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 E E + + +NVE +G++LYT Y Y EI+G ILL++++ AI L R RR+ + Q Sbjct: 117 LEAMPEPVKHGAEHSNVEVLGRLLYTDYFYAFEIAGVILLVAIVAAISLTFRGRRERRGQ 176 Query: 175 DISKQLESNPDNSIVMVK 192 + Q ++ D + +VK Sbjct: 177 SVPSQHRASKDERLHIVK 194 >gi|187923349|ref|YP_001894991.1| NADH dehydrogenase subunit J [Burkholderia phytofirmans PsJN] gi|187714543|gb|ACD15767.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia phytofirmans PsJN] Length = 230 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 126/207 (60%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+V KR F+ + L +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDVLRKDFKR-FVP---MATLVGAIIVIETALILWHGYGA 116 Query: 121 LSRLVFKGNNVEN----------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + N IGKV+YT Y + E++G +LL+++I AI L H++D Sbjct: 117 TATALRDTTAAANGMGDWSNTRLIGKVIYTDYIFAFEVAGLVLLVAIIAAIALTASHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ++S+Q++ + + +VK+KS K Sbjct: 177 SKRQNVSEQVKVRAQDRVRVVKMKSEK 203 >gi|254491551|ref|ZP_05104730.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Methylophaga thiooxidans DMS010] gi|224463029|gb|EEF79299.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Methylophaga thiooxydans DMS010] Length = 199 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 122/197 (61%), Gaps = 8/197 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY F+ + + ++ +V+TVRNP+ + L+ AF +A ++L+L AEF+A+ ++VY Sbjct: 1 MEKIIFYAFAAILLFAATMVITVRNPVRAALFLVLAFFTSAAIWLMLQAEFLAISLVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV+V FLF++MMLDID+ P ++ GF +GI+ A LIV ++ + + +++ Sbjct: 61 VGAVLVLFLFVVMMLDIDL---APLQE-GFTKYLPLGIIVAALIVAEMITVLNAPQFDIA 116 Query: 123 RLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQL 180 G +N +G++LYT Y YP EI+ IL ++++ AI L LR H R K QD KQ+ Sbjct: 117 ATAVAGESNTRMLGRLLYTVYVYPFEIASVILTVAIVAAITLTLREHSR--KLQDPGKQV 174 Query: 181 ESNPDNSIVMVKVKSGK 197 + +V ++S K Sbjct: 175 AVRKQERVRLVDLRSAK 191 >gi|163868364|ref|YP_001609573.1| NADH dehydrogenase subunit J [Bartonella tribocorum CIP 105476] gi|161018020|emb|CAK01578.1| NADH dehydrogenase I chain J [Bartonella tribocorum CIP 105476] Length = 206 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 123/191 (64%), Gaps = 13/191 (6%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ +V+T RNP++SV LI AF NAA LFLL GAEF+ I LVVYVGAV V FLF++MML Sbjct: 20 SAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGFILLVVYVGAVAVLFLFVVMML 79 Query: 78 DID-IEVAEPRKKRGFLGSFFIGILAAELIV--CASNF------MVFSAEGELSRLVFKG 128 D+D E+ + +G+ I+A ELI+ +S+F V +L + Sbjct: 80 DVDFAELKSGTLRYAPIGALIGVIIAIELIIVFVSSHFSPVLRTHVTQPMPDLG----QR 135 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188 N + +G +LYT Y + +I+G ILL++MIGAIVL LRH+ +KRQ I+KQ+ +++I Sbjct: 136 TNTQALGDILYTDYVFYFQIAGIILLVAMIGAIVLTLRHKSGVKRQSIAKQVSRTVESAI 195 Query: 189 VMVKVKSGKGI 199 + +V+SGKGI Sbjct: 196 EIKQVESGKGI 206 >gi|124266605|ref|YP_001020609.1| NADH-ubiquinone oxidoreductase, subunit J [Methylibium petroleiphilum PM1] gi|124259380|gb|ABM94374.1| NADH-ubiquinone oxidoreductase, chain J [Methylibium petroleiphilum PM1] Length = 215 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/199 (35%), Positives = 118/199 (59%), Gaps = 9/199 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +S FY+FS + + +SF V+T R+ +Y+ L+ AF NAA +++LL AEF+A+ ++ Sbjct: 1 MNTESALFYVFSAILLFASFRVITARSAVYAALYLVLAFFNAACVWMLLEAEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAELIVCASNFMVF 115 VYVGAV+V FLF++MMLD + + ++GF F + ++AAE+I Sbjct: 61 VYVGAVMVLFLFVVMMLDANADTV----RKGFWQLFPVAGTIGAVIAAEMIWVLRRGFDL 116 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 L + + N + +G +YT Y YPL+I+ +LL+++I AI L LR R+D K D Sbjct: 117 PEAPPLDAVAAQMGNTKLLGIEIYTHYLYPLQIAAVLLLVAIIAAIALTLRKRKDSKYVD 176 Query: 176 ISKQLESNPDNSIVMVKVK 194 S Q++ + + +V+++ Sbjct: 177 PSAQVKVRKADRVRIVQMQ 195 >gi|149927550|ref|ZP_01915804.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Limnobacter sp. MED105] gi|149823823|gb|EDM83049.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Limnobacter sp. MED105] Length = 210 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 115/191 (60%), Gaps = 6/191 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFY+F+ + + ++ V+T N +++ L+ +F +A+ L++LL AEF+A+ ++VYVGAV Sbjct: 7 FFYVFAAILVFAAVRVITASNAVHAALYLVLSFFSASALWMLLEAEFLAISLVLVYVGAV 66 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRL 124 +V FLF++MM+D++++ + + GF + + + LI + ++ + L Sbjct: 67 MVLFLFVVMMVDVNMD----KVRAGFWKNLPVAAIVGSLIAFQMSVVLLRGFWDPNLETP 122 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 NN E +GK+LYT+Y YP E++ ILL++M+ AI L LR R+D K Q S Q+ Sbjct: 123 EQAANNTEALGKLLYTEYLYPFEVAALILLVAMVAAIALTLRKRKDTKGQVPSDQVRVKS 182 Query: 185 DNSIVMVKVKS 195 + + +V + + Sbjct: 183 TDRVKLVSMPA 193 >gi|312796892|ref|YP_004029814.1| NADH-quinone oxidoreductase chain J [Burkholderia rhizoxinica HKI 454] gi|312168667|emb|CBW75670.1| NADH-quinone oxidoreductase chain J (EC 1.6.5.3) [Burkholderia rhizoxinica HKI 454] Length = 265 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 113/192 (58%), Gaps = 17/192 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + +S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 36 MEFTTVLFYIFALLMTVSGLKVITARNPVSSALFLVLAFFNAAAIWMLLEAEFLAILLVL 95 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V +R F + + +IV + +++ G Sbjct: 96 VYVGAVMVLFLFVVMMLDINLDVL----RRDFRRFVPVATIVGAIIVIETALILWHGYGA 151 Query: 121 LSRLVFKG-------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V +N IG+++Y+ Y + E++G +LL++++ A+ L +R Sbjct: 152 TVSPVHDAVQATQAAGAGGALSNTRMIGRIIYSDYIFAFEVAGLVLLVAIVAALALTIRD 211 Query: 168 RRDIKRQDISKQ 179 +D+KRQ +S+Q Sbjct: 212 GKDVKRQRVSEQ 223 >gi|63025105|ref|YP_232799.1| NADH dehydrogenase subunit 6 [Geodia neptuni] gi|37961467|gb|AAP59164.1| NADH dehydrogenase subunit 6 [Geodia neptuni] Length = 185 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 112/182 (61%), Gaps = 8/182 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ IIS +V++ NP++SV L+ AF+ A+ LF+LL EF+A+I L+VYVGA+ Sbjct: 5 FYLFALSIIISGVMVISALNPVHSVLWLVVAFIGASALFILLEVEFLALILLIVYVGAIA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGIL-AAELIVCASNFMVFSAEGELSRLV 125 + FLF+IMML++ E + +L F IGI+ +E+++ + + + Sbjct: 65 ILFLFVIMMLNLT--GLEGTDRSNYLPAGFIIGIVFLSEVLILQTRISTVESYRNSNWNF 122 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI----SKQLE 181 + +N+E +G+VLYT Y Y ++ ILL+++IGAIVL R IKRQDI S+QL Sbjct: 123 MEASNIEVLGRVLYTNYCYLFILASLILLVALIGAIVLTHDTRVKIKRQDIFIQTSRQLW 182 Query: 182 SN 183 N Sbjct: 183 KN 184 >gi|164421182|ref|YP_001648568.1| NADH dehydrogenase subunit 6 [Ptilocaulis walpersi] gi|158938964|gb|ABW83889.1| NADH dehydrogenase subunit 6 [Ptilocaulis walpersi] Length = 185 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 113/180 (62%), Gaps = 11/180 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+F IIS +VV+ NP+YSVF LI AF+NA+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYLFAFNIIISGIMVVSALNPVYSVFWLIIAFINASILFILLDVDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGI---LAAELIVCASNFMVFSAEGELSR 123 + FLF+IMML++ I+ + +L F IG+ + +I+ ++ F F +++ Sbjct: 65 ILFLFVIMMLNL-IDYERGKDMSNYLPAGFVIGVIFFITCRIILLSNQFSTF----YVNK 119 Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 F N N+ G+VLYT Y Y I+ ILL++MIGAIVL +++ K QDI Q+ Sbjct: 120 FDFIENFSNITGFGRVLYTDYYYLFLIASLILLIAMIGAIVLTHEIKKEKKNQDIFIQIS 179 >gi|240850592|ref|YP_002971992.1| NADH dehydrogenase I subunit J [Bartonella grahamii as4aup] gi|240267715|gb|ACS51303.1| NADH dehydrogenase I subunit J [Bartonella grahamii as4aup] Length = 206 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/187 (43%), Positives = 124/187 (66%), Gaps = 5/187 (2%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ +V+T RNP++SV LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF++MML Sbjct: 20 SAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFVVMML 79 Query: 78 DID-IEVAEPRKKRGFLGSFFIGILAAELIVC-ASNFMVFSAEGELSRL---VFKGNNVE 132 D+D E+ + +G+ I+A ELIV S++ +++ + + N + Sbjct: 80 DVDFAELKSGTLRYAPIGALIGVIIAVELIVVFVSSYFSPVLRTHVTQPMPDLTQRTNTQ 139 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 +G +LYT Y + +I+G ILL++MIGAIVL LRH+ +KRQ I++Q+ +++I + + Sbjct: 140 ALGDILYTDYVFYFQIAGMILLVAMIGAIVLTLRHKLGVKRQSIAEQVSRTVESAIEIKQ 199 Query: 193 VKSGKGI 199 V+SGKG+ Sbjct: 200 VESGKGM 206 >gi|164421001|ref|YP_001648496.1| NADH dehydrogenase subunit 6 [Topsentia ophiraphidites] gi|158938931|gb|ABW83858.1| NADH dehydrogenase subunit 6 [Topsentia ophiraphidites] Length = 188 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 113/183 (61%), Gaps = 11/183 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+F IIS +V++ NP++SV LI AF +AA LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYLFAFNVIISGIMVISALNPVHSVLWLIVAFTSAAALFILLEVDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGIL-AAELIVCASNFMVFSAE----GEL 121 + FLF+IMML++ ++ +L F IG++ E+++ S F+ Sbjct: 65 ILFLFVIMMLNLT-DLGGGGDMSNYLPAGFIIGVVFLFEVLIFQSRMATFNLSYINYPHN 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI----S 177 + K N+E +G+VLYT Y Y ++ FILL++MIGAIVL R +IKRQDI S Sbjct: 124 WDFIEKAPNIEVLGRVLYTNYYYLFIMASFILLVAMIGAIVLTHSTREEIKRQDIFIQTS 183 Query: 178 KQL 180 +QL Sbjct: 184 RQL 186 >gi|49474186|ref|YP_032228.1| NADH dehydrogenase subunit J [Bartonella quintana str. Toulouse] gi|49239690|emb|CAF26065.1| NADH dehydrogenase I, J subunit [Bartonella quintana str. Toulouse] Length = 206 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/187 (44%), Positives = 124/187 (66%), Gaps = 5/187 (2%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ +V+T RNP++SV LI AF NAA LFLL GAEF+ +I L+VYVGAV V FLF+IMML Sbjct: 20 SAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLIVYVGAVAVLFLFVIMML 79 Query: 78 DID-IEVAEPRKKRGFLGSFFIGILAAELI--VCASNF--MVFSAEGELSRLVFKGNNVE 132 D+D E+ + +G+F ++A ELI +S+F +V + + + + N + Sbjct: 80 DVDFAELKSGALRYAPIGAFIGVVVAVELIFVFVSSHFSPVVRTHVTQPMPNLAQRTNTQ 139 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 +G +LYT Y + +++G ILL++MIGAIVL LRH+ ++RQ I+ Q+ N+I + + Sbjct: 140 ALGDILYTDYVFYFQVAGIILLVAMIGAIVLTLRHKSGVRRQSIAVQVSRTVANAIEIKQ 199 Query: 193 VKSGKGI 199 V+SGKGI Sbjct: 200 VESGKGI 206 >gi|292493659|ref|YP_003529098.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus halophilus Nc4] gi|291582254|gb|ADE16711.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus halophilus Nc4] Length = 201 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 122/202 (60%), Gaps = 13/202 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY F+ + + ++ +V+TVRNP+ + L+ AF +A ++LLL AEF+A++ ++VY Sbjct: 1 MEKILFYSFAAILLFAATMVITVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119 +GAV+V FLF++MMLDI++ P ++ GF +G L A LI V AE Sbjct: 61 IGAVMVLFLFVVMMLDINL---APLRE-GFARYLPVGFLVAALIAL-EMMAVLGAENFGL 115 Query: 120 -ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + +G +N + +G +LYT Y YP E++ ILL++++ AI L LR RR K QD Sbjct: 116 EQFTSPPPQGPDYSNTKELGNLLYTVYVYPFELASVILLVAIVAAIALTLR-RRTSKAQD 174 Query: 176 ISKQLESNPDNSIVMVKVKSGK 197 +Q+ + + +VK+ + K Sbjct: 175 PVQQIRVRRQDRVRLVKMAAEK 196 >gi|56478185|ref|YP_159774.1| NADH dehydrogenase I, chain J [Aromatoleum aromaticum EbN1] gi|56314228|emb|CAI08873.1| NADH dehydrogenase I, chain J [Aromatoleum aromaticum EbN1] Length = 200 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 118/203 (58%), Gaps = 10/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + V+T RNP+++ L+ +F +A G++LLL AEF+A++ ++ Sbjct: 1 MDFKTFVFYVLAVIMVFAGLRVITARNPVHAALFLVLSFFSAGGIWLLLAAEFLAVVLVM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC------ASNFMV 114 VYVGAV+V FLF++MMLDI+++ R ++GF +G L L+V + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLD----RLRQGFWSYLPVGALIGVLLVVEMALVLGGRYFG 116 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 A E +N +G++LYT Y YP E++ +LL++MI A+ L LR R+ ++ Sbjct: 117 LEAMPEPPAAQAGYSNTRELGRLLYTDYVYPFELASLLLLVAMIVAVTLTLRKRKGVRYL 176 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 + S+Q+ + + ++ + + K Sbjct: 177 NPSEQISIKRGDRVELISMPAEK 199 >gi|284794666|ref|YP_003412024.1| NADH dehydrogenase subunit 6 [Lubomirskia baicalensis] gi|284098135|gb|ADB78066.1| NADH dehydrogenase subunit 6 [Lubomirskia baicalensis] Length = 195 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/192 (42%), Positives = 113/192 (58%), Gaps = 17/192 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ IIS +V++ NP++SV LI AF +A+ LF+LL EF+A+I L+VYVGA+ Sbjct: 5 FYLFTLGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGIL-AAELIVCASNFMVFSAEGELSRL- 124 + FLF+IMML++ D+E F IG++ E+ MV G +S Sbjct: 65 ILFLFVIMMLNLTDLEGGGDMSNY-LPAGFIIGVVFLFEIAHVMGGRMVSWPHGGISGTL 123 Query: 125 --------VFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + GN NVE +G+VLYT Y Y I+ FILL++MIGAIVL + +IKRQD Sbjct: 124 SSDIAQPAILLGNPNVEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHDSKTEIKRQD 183 Query: 176 I----SKQLESN 183 I S+QL + Sbjct: 184 IFIQTSRQLWQD 195 >gi|91776404|ref|YP_546160.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Methylobacillus flagellatus KT] gi|91710391|gb|ABE50319.1| NADH dehydrogenase subunit J [Methylobacillus flagellatus KT] Length = 212 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 119/206 (57%), Gaps = 12/206 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ Q FY + + + + V+T RNP+++ L+ AF AAG++LLL AEF+A+ ++ Sbjct: 1 MIFQDYVFYALAAILLFAGVRVITTRNPVHATLFLVLAFFTAAGIWLLLEAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAE--LIVCASNFM 113 VYVGAV+V FLF++MMLDI+++ + + GF + + ++A E +I+ + +F Sbjct: 61 VYVGAVMVLFLFVVMMLDINLD----KMREGFWNALPVALPVGLLMAGEMVMILGSKHFS 116 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 R N E IG+ LYT Y P E++ +LL++++ AI L LR R+D K Sbjct: 117 PDMLSTPAPRPAGYSNTAE-IGRQLYTDYLLPFELASVVLLVAIVAAIALTLRERKDSKF 175 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 D ++Q++ + + +V + + K I Sbjct: 176 MDPAEQVKVKRADRVRIVSMPAEKEI 201 >gi|164420802|ref|YP_001648470.1| NADH dehydrogenase subunit 6 [Ephydatia muelleri] gi|158938918|gb|ABW83846.1| NADH dehydrogenase subunit 6 [Ephydatia muelleri] Length = 196 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 81/193 (41%), Positives = 113/193 (58%), Gaps = 18/193 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ IIS +V++ NP++SV LI AF +A+ LF+LL EF+A+I L+VYVGA+ Sbjct: 5 FYLFTLGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGIL-AAELIVCASNFMVFSAEGELSRL- 124 + FLF+IMML++ D+E F IG++ E+ MV G +S Sbjct: 65 ILFLFVIMMLNLTDLEGGGDMSNY-LPAGFIIGVVFLFEIAHVMGGRMVSWPHGGISGTL 123 Query: 125 ---------VFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + GN NVE +G+VLYT Y Y I+ FILL++MIGAIVL + +IKRQ Sbjct: 124 SSDIAAQPAILLGNPNVEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHDSKTEIKRQ 183 Query: 175 DI----SKQLESN 183 DI S+QL + Sbjct: 184 DIFIQTSRQLWQD 196 >gi|319407258|emb|CBI80897.1| NADH dehydrogenase I chain J [Bartonella sp. 1-1C] Length = 206 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/189 (43%), Positives = 118/189 (62%), Gaps = 5/189 (2%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 +IS+ +VV RNP++SV LI AF NAA LFLL GAEF+ +I LVVYVGA+ V FLF++M Sbjct: 18 LISAVIVVAARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAIAVLFLFVVM 77 Query: 76 MLDID---IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLVFKGNN 130 MLD+D ++ R I + + + +F S + + + + N Sbjct: 78 MLDVDFAELKSGTLRYAPIAAFIGIIIAIELIFVFISDSFSPVSGVHTTQPTPDLTQRTN 137 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190 + +G +LYT Y + +ISG ILL++MIGAIVL LRHR +KRQ I+ Q+ P+++I + Sbjct: 138 TQALGDILYTDYVFYFQISGLILLVAMIGAIVLTLRHRSGVKRQSIAVQVARTPESAIEI 197 Query: 191 VKVKSGKGI 199 KV+SGKGI Sbjct: 198 KKVESGKGI 206 >gi|170676855|ref|YP_001742098.1| NADH dehydrogenase subunit 6 [Suberites domuncula] gi|170649721|emb|CAM84213.1| NADH dehydrogenase subunit 6 [Suberites domuncula] Length = 189 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 110/179 (61%), Gaps = 7/179 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+F I+S +V++ NP++SVF LI AF +AA LF+LL EF+A I L+VYVGA+ Sbjct: 5 FYLFAFGVILSGIMVISALNPVHSVFWLIVAFTSAALLFILLEVEFIAFIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGS-FFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IMML++ P+ ++ + IG++ ++ S++ S R + Sbjct: 65 ILFLFVIMMLNLTDLGNNPQDMSNYMPTGLIIGVVVILEVLIFSSWKSNSEGSPYLRWDY 124 Query: 127 --KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD----ISKQ 179 K +N+E +G+VLYT Y Y ++ FILL +MIGAIVL IKRQD +S+Q Sbjct: 125 IEKTSNIEVLGRVLYTDYYYLFILASFILLSAMIGAIVLTQTKSVGIKRQDSFTQVSRQ 183 >gi|170742520|ref|YP_001771175.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium sp. 4-46] gi|168196794|gb|ACA18741.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium sp. 4-46] Length = 206 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 13/195 (6%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + + S +V+ RNP+ SV LI AFVNAAGLF+L+GAEF+AMI +VVYVGAV V FLF+ Sbjct: 14 ITVASGLVVIAARNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVVVYVGAVAVLFLFV 73 Query: 74 IMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 +MMLD+D AE R+ GF +G+ + EL++ ++ + V G Sbjct: 74 VMMLDVDF--AELRQ--GFQDYLPVGALIGAVFLIELLLVVGSWAIDPGLVHAPLAVAPG 129 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N + +G VLYT Y + +I+G ILL++MIGAIVL LR R +KRQDI+ Q Sbjct: 130 GEQITNTQALGLVLYTNYFFFFQIAGLILLVAMIGAIVLTLRDRPGVKRQDIAVQNARTQ 189 Query: 185 DNSIVMVKVKSGKGI 199 ++ + KV + +G+ Sbjct: 190 ALAVELRKVPTRQGV 204 >gi|62161302|ref|YP_214868.1| NADH dehydrogenase subunit 6 [Axinella corrugata] gi|55275033|gb|AAV49311.1| NADH dehydrogenase subunit 6 [Axinella corrugata] Length = 183 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 111/182 (60%), Gaps = 10/182 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF I+S +V++ NP++SV LI AF +A LF+LL EF+A++ L+VYVGA+ Sbjct: 5 FYLFXLSVILSGIMVISAFNPVHSVLWLIVAFTSATALFILLEVEFIALMFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFSAEGELSRL 124 + FLF+IMML++ D E E F IG++ LI C S+F S+ L Sbjct: 65 ILFLFVIMMLNLTDXEGGEDMSNY-LPAGFIIGVVF--LINCRMVSHFGQQSSYYISWDL 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI----SKQL 180 + K N+E +G+VLYT Y Y I+ FILL++MIG IVL R +IKRQ+I S+QL Sbjct: 122 IEKAPNIEVLGRVLYTNYYYLFIIASFILLVAMIGVIVLTHDTRSEIKRQNIFLQTSRQL 181 Query: 181 ES 182 + Sbjct: 182 WA 183 >gi|1352591|sp|P48925|NU6M_CYACA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|758173|emb|CAA88767.1| NADH dehydrogenase subunit 6 [Cyanidium caldarium] Length = 201 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 123/192 (64%), Gaps = 7/192 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY FS ++++S+ +V++V+NP++SV LI F N GL LLLGAEF++++ L+VYVGA+ Sbjct: 7 FYFFSGLSLVSASIVISVKNPVFSVVFLILVFFNVVGLLLLLGAEFLSLLFLIVYVGAIA 66 Query: 68 VFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL-- 124 V FLF++M+L++ IE+ F GS + I E+ + ++ + F++ L R Sbjct: 67 VLFLFVVMILNLKFIELRSSFFYYAFFGSLIMAIFLFEIFIILNSDLTFASSYFLERKRI 126 Query: 125 ----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 ++ N++ +G VLYT Y+Y +SGF+LL++++GAI+L L R I+RQD + Q+ Sbjct: 127 WVQELYSYTNLQILGNVLYTSYSYLFILSGFVLLVAILGAIILTLYQRSQIRRQDPNVQV 186 Query: 181 ESNPDNSIVMVK 192 N D++I K Sbjct: 187 VRNFDDTIRFFK 198 >gi|163855996|ref|YP_001630294.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella petrii DSM 12804] gi|163259724|emb|CAP42025.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella petrii] Length = 215 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/198 (36%), Positives = 118/198 (59%), Gaps = 7/198 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + +I++F V+T R+P+ +V LI AF NAA L++LLGAEF+A++ ++ Sbjct: 1 MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM---VFSA 117 VYVGAV+V FLF++MMLDI I+ + G +G+L ++V +F+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDIRIDTL----RHGLKTYLPLGLLIGAVLVVEMSFVLGATWYG 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 G + + NN +G+V+YTQY Y +E+ +LL+ MI AI L LR RRD K D S Sbjct: 117 AGPQASMAADYNNTRALGEVMYTQYVYAVEVGAALLLVGMIAAIALTLRRRRDAKYNDPS 176 Query: 178 KQLESNPDNSIVMVKVKS 195 + + +V + + Sbjct: 177 AAVRVRAKDRFRLVSMPA 194 >gi|164420978|ref|YP_001648600.1| NADH dehydrogenase subunit 6 [Xestospongia muta] gi|158938983|gb|ABW83907.1| NADH dehydrogenase subunit 6 [Xestospongia muta] Length = 187 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 20/186 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ IIS +V++ +P+YSV LI AFV+A+ LF+LL EF+A I L+VYVGA+ Sbjct: 5 FYLFTLGVIISGIMVISALSPVYSVLWLIMAFVSASALFILLEVEFIAFIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF- 126 + FLF+IMML++ E F IG+ + F+ ++ + S++V Sbjct: 65 ILFLFVIMMLNLTEETIGDDMSNYLPAGFIIGV-----VFLFEIFIFWNGTTDGSQMVLY 119 Query: 127 ---KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-----RDIKRQDI-- 176 K N+E +G+VLYT Y Y ++ FILL++MIGAIV L H +D KRQDI Sbjct: 120 WVVKNTNIEVLGRVLYTDYYYLFIVASFILLVAMIGAIV--LTHDTGTEIQDRKRQDIFV 177 Query: 177 --SKQL 180 S+QL Sbjct: 178 QTSRQL 183 >gi|319404250|emb|CBI77843.1| NADH dehydrogenase I chain J [Bartonella rochalimae ATCC BAA-1498] Length = 206 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/189 (43%), Positives = 119/189 (62%), Gaps = 5/189 (2%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 +IS+ +VV RNP++SV LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF++M Sbjct: 18 LISAVIVVVARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFVVM 77 Query: 76 MLDID---IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLVFKGNN 130 MLD+D ++ + I + + +++F S + + + + N Sbjct: 78 MLDVDFAELKSGTLKYAPIGAFIGIIIAIELIFVFISNSFFPVSGVHATQPTPDLTQRTN 137 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190 + +G +LYT Y + +ISG ILL++MIGAIVL LRHR +KRQ I+ Q+ P+++I + Sbjct: 138 TQALGDILYTDYVFYFQISGLILLVAMIGAIVLTLRHRSGVKRQSIAVQVARTPESAIEI 197 Query: 191 VKVKSGKGI 199 KV+SGKGI Sbjct: 198 KKVESGKGI 206 >gi|88812967|ref|ZP_01128210.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrococcus mobilis Nb-231] gi|88789745|gb|EAR20869.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrococcus mobilis Nb-231] Length = 202 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 119/203 (58%), Gaps = 18/203 (8%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L FY+F+ + + ++ +V+T +NP++S L+ AF N+A L+L+ AEF+ + ++VYVGA Sbjct: 5 LLFYVFAAVLLFAATMVITAKNPVHSALFLVLAFFNSAALWLMAEAEFLGIALVLVYVGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V+V FLF++MMLDI++ P ++ GF IG L ++V +V S + L+ Sbjct: 65 VMVLFLFVVMMLDINL---APMRE-GFARYLPIGALVGCVMVVEMALVVGSKD---VNLI 117 Query: 126 FKG-----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G +N + +G VLYT YAYP EI+ +LL++++ AI+L R R K+Q Sbjct: 118 HGGPVTSAAEGVGMSNTKALGSVLYTVYAYPFEIASVVLLVAIVAAIMLTHRRRPGTKQQ 177 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 +I +Q+ + + +V + K Sbjct: 178 NIDRQVRVRKEQRLRIVTMAPEK 200 >gi|11466532|ref|NP_044781.1| NADH dehydrogenase subunit 6 [Reclinomonas americana] gi|2258362|gb|AAD11896.1| NADH dehydrogenase subunit 6 [Reclinomonas americana] Length = 205 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/194 (39%), Positives = 118/194 (60%), Gaps = 10/194 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY FSF+A+ S+ LV+ NPI+SV L+ F + +GLF+L+ AEF+AMI ++VYVG Sbjct: 4 EILFYFFSFLALSSATLVIASSNPIHSVLFLVLVFCSTSGLFILIEAEFIAMIFIMVYVG 63 Query: 65 AVIVFFLFIIMMLDI-----DIEVAEPRKKRGFLGSFFIGILA----AELI-VCASNFMV 114 A+ V FLF++MML++ ++ + G +G F+ L ++LI + N Sbjct: 64 AIAVLFLFVVMMLNVRLVQFNVNMLRYLPLGGVIGLIFLLELFLIIDSDLIPLFGLNINN 123 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 A + + + NVE IGK+LYT Y Y +SG ILL++MIGAIVL + R ++RQ Sbjct: 124 NIAPFQWADTIDSITNVEAIGKLLYTHYFYLFLVSGMILLVAMIGAIVLTMYKRVGVRRQ 183 Query: 175 DISKQLESNPDNSI 188 DI++QL + +I Sbjct: 184 DINEQLSRDFKETI 197 >gi|110816045|ref|YP_684376.1| NADH dehydrogenase subunit 6 [Oltmannsiellopsis viridis] gi|86450256|gb|ABC96335.1| NADH dehydrogenase subunit 6 [Oltmannsiellopsis viridis] Length = 207 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 112/193 (58%), Gaps = 25/193 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS +A+IS+ V +NP++SV LI F NA+GL +L+G +F+A+I ++VYVGA+ Sbjct: 5 FYLFSSLALISAVFVTQAKNPVHSVLFLILVFFNASGLLILMGLDFIALILMIVYVGAIT 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMV-------F 115 FLF++M+LDI E ++ R G LG F+ ++ V N +V F Sbjct: 65 TLFLFVVMLLDIKTEEVSEKRLRYLPIGGLLGVLFL----VQIFVVIENSLVPHWVHVPF 120 Query: 116 SAEG---------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + + L N+E +G+VLYT Y+ ++ F+LL++MIG+IVL + Sbjct: 121 TNNPVILDHLQYLKWNTLTDNYTNIEALGQVLYTVYSLHFILASFVLLVAMIGSIVLTMV 180 Query: 167 HRRDIKRQDISKQ 179 +KRQ++S+Q Sbjct: 181 KGAYVKRQEVSEQ 193 >gi|121602205|ref|YP_989079.1| NADH dehydrogenase subunit J [Bartonella bacilliformis KC583] gi|120614382|gb|ABM44983.1| NADH dehydrogenase (quinone), J subunit [Bartonella bacilliformis KC583] Length = 206 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/205 (45%), Positives = 135/205 (65%), Gaps = 11/205 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FFYLFSF+ ++S+ +V+ RNP++SV LI AF NAA LFLL GAEF+ ++ LVVY Sbjct: 5 LAAAFFYLFSFIMLMSAIIVIAARNPVHSVLFLILAFFNAAALFLLAGAEFLGLLLLVVY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF----LGSFFIGILAAELIVC--ASNFMVFS 116 VGAV V FLF++MMLD+D AE K+ F +G+ I+A ELI+ +++F + Sbjct: 65 VGAVAVLFLFVVMMLDVDF--AE-LKRNAFQYVPVGALVGIIIAVELIIVFFSNDFSLIL 121 Query: 117 AEGELSRL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + + N + +G +LYT Y + +I+G ILL++MIGAIVL LRH+ +KRQ Sbjct: 122 GTHTTQPMPSLEHRTNTQALGDILYTDYVFYFQIAGMILLVAMIGAIVLTLRHKAGVKRQ 181 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 I Q+ NP+ +I + KV+SGKGI Sbjct: 182 SIGIQVARNPETAIEIKKVESGKGI 206 >gi|74317169|ref|YP_314909.1| NADH dehydrogenase I subunit J [Thiobacillus denitrificans ATCC 25259] gi|74056664|gb|AAZ97104.1| NADH dehydrogenase I chain J [Thiobacillus denitrificans ATCC 25259] Length = 211 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 116/196 (59%), Gaps = 10/196 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F+ + + + V+T RNP+++ L+ AF AAGL+LLL AEF+A+ ++VYVGAV+ Sbjct: 7 FYFFAAILVFAGLRVITARNPVHAALFLVLAFFTAAGLWLLLEAEFLAITLVLVYVGAVM 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------FSAEGEL 121 V FLF++MMLDI+++ + + GF + + A L+V ++ G Sbjct: 67 VLFLFVVMMLDINLD----QLREGFWNYLPLAGVVAILLVIEMALILGGRHFGLDVIGVP 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 +N + +G+++YT Y Y E++ ILL++++ AI L LR R+D K D ++Q++ Sbjct: 123 PAQPADYSNTKELGRLIYTDYVYAFELAAVILLVAIVAAIALTLRRRKDTKYIDPAQQVK 182 Query: 182 SNPDNSIVMVKVKSGK 197 ++ + ++K+ + K Sbjct: 183 VKRNDRLRIIKMPAEK 198 >gi|317097065|ref|YP_004123207.1| NADH dehydrogenase subunit 6 [Oscarella viridis] gi|308912700|gb|ADO51460.1| NADH dehydrogenase subunit 6 [Oscarella viridis] Length = 197 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 14/186 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ IIS +V++ NPI+SVF LI F+ A+ LF+LLG +F+A+I L+VYVGA+ Sbjct: 5 FYIFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119 + FLF+IMML++ D+E +GS +L E+++ +S Sbjct: 65 ILFLFVIMMLNLTDLEGGGDMSNYIPIGSVIGVLLLFEVLIMGREATAYSYRDIDHECLR 124 Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + S + K +N+E +G++LYT Y Y I+ FILL++MIGAIVL ++KR Sbjct: 125 GGVDAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGTELKR 184 Query: 174 QDISKQ 179 QD+ Q Sbjct: 185 QDLFTQ 190 >gi|11467107|ref|NP_054408.1| NADH dehydrogenase subunit 6 [Marchantia polymorpha] gi|585594|sp|P26850|NU6M_MARPO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|404360|gb|AAB27401.1| NADH dehydrogenase subunit 6=nad6 gene product [Marchantia polymorpha=liverworts, Peptide Mitochondrial, 199 aa] gi|786192|gb|AAC09405.1| nad6 [Marchantia polymorpha] Length = 199 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 111/204 (54%), Gaps = 23/204 (11%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+F +A++S +V+ +NP++SV LI F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFYVFVVLALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFF------------IGILAAELIVC 108 + V FLF++MML I IE R G +G F I IL +L Sbjct: 62 IAVLFLFVVMMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILPTKLSAT 121 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + V++ + + N+E +G +LYT Y + +S ILL+++IGAIVL + Sbjct: 122 YLTYTVYAGK------IHSWTNLETLGNLLYTTYFFLFLVSSLILLVALIGAIVLTMHKT 175 Query: 169 RDIKRQDISKQLESNPDNSIVMVK 192 +KRQD+ Q + N+I V+ Sbjct: 176 TKVKRQDVFIQNAIDFQNTIKKVR 199 >gi|325915548|ref|ZP_08177859.1| NADH dehydrogenase subunit J [Xanthomonas vesicatoria ATCC 35937] gi|325538264|gb|EGD09949.1| NADH dehydrogenase subunit J [Xanthomonas vesicatoria ATCC 35937] Length = 220 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 120/207 (57%), Gaps = 20/207 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S+ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 6 SIAFYAFSAIAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC------------ASNF 112 AV+V FLF++MMLDID R + G++ +G++ A ++ A+ F Sbjct: 66 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRTATPF 121 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 V +A + + +N+ + K LYT++ E + IL ++++ A++L LR R IK Sbjct: 122 PVDNAAAQAA----DSSNLTWLAKSLYTEFLLAFEFAAVILTVAVVAAVMLTLRKRTGIK 177 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 Q+ S+Q + + +VK+ K + Sbjct: 178 LQNASEQSRVKAGDRLRIVKMAVEKPV 204 >gi|11465629|ref|NP_049300.1| NADH dehydrogenase subunit 6 [Porphyra purpurea] gi|4106936|gb|AAD03103.1| NADH dehydrogenase subunit 6 [Porphyra purpurea] Length = 209 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 26/198 (13%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++FS ++++S+ LVV++ N +YSV LI F N A + LLLGAEF++ + L+VYVGA+ Sbjct: 7 FWIFSIISLLSACLVVSLANAVYSVLFLIIVFCNTASILLLLGAEFLSFLFLIVYVGAIA 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----------------AAELIVCAS 110 V FLF++MML++ I+ A+ L F I + L + Sbjct: 67 VLFLFVVMMLNVKIDGAKVNYTTILLIGFLISSILLFQFSSAMQIDLDAYSNIRLNLTEV 126 Query: 111 NF---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 NF +++ E L +NVE+IG VLYT Y+ + FILLL+MIG+I+L + Sbjct: 127 NFPTTTLWTQENSLP------SNVESIGLVLYTSYSLVFILCAFILLLAMIGSIILTMNQ 180 Query: 168 RRDIKRQDISKQLESNPD 185 R +K+Q I+ QL + + Sbjct: 181 RNGVKKQQITLQLHRDQN 198 >gi|317097445|ref|YP_004123644.1| NADH dehydrogenase subunit 6 [Oscarella tuberculata] gi|317134139|ref|YP_004123302.1| NADH dehydrogenase subunit 6 [Oscarella lobularis] gi|308912624|gb|ADO51389.1| NADH dehydrogenase subunit 6 [Oscarella tuberculata] gi|308912746|gb|ADO51503.1| NADH dehydrogenase subunit 6 [Oscarella lobularis] Length = 197 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 112/186 (60%), Gaps = 14/186 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ IIS +V++ NPI+SVF LI F+ A+ LF+LLG +F+A+I L+VYVGA+ Sbjct: 5 FYIFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIV-----CASNFMVFSAE--- 118 + FLF+IMML++ D+E +GS +L E+++ A N+ E Sbjct: 65 ILFLFVIMMLNLTDLEGGGDMSNYIPIGSGIGVLLLFEVLIMGREATAYNYRDIDHECLK 124 Query: 119 -----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + S + K +N+E +G++LYT Y Y I+ FILL++MIGAIVL ++KR Sbjct: 125 GGVDAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELKR 184 Query: 174 QDISKQ 179 QD+ Q Sbjct: 185 QDLFTQ 190 >gi|164421137|ref|YP_001648582.1| NADH dehydrogenase subunit 6 [Ectyoplasia ferox] gi|158668128|gb|ABW76588.1| NADH dehydrogenase subunit 6 [Ectyoplasia ferox] Length = 185 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 116/186 (62%), Gaps = 11/186 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+F IIS +V++ NPIYSVF LI AF+NA+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYLFAFNVIISGIMVISALNPIYSVFWLIIAFINASVLFILLEVDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGI---LAAELIVCASNFMVFSAEGELSR 123 + FLF+IMML++ I+ + R +L F IG+ + +I+ +S + L+R Sbjct: 65 ILFLFVIMMLNL-IDYEKGRDMSNYLPAGFVIGVIFFITCRIIILSSQ----LSLFSLNR 119 Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + N N+ +G+VLYT Y Y I+ ILL++MIGAI+L +++ K QD+ Q+ Sbjct: 120 FDYVENFSNIIGLGRVLYTDYYYLFLIASLILLVAMIGAIILTHETKKEKKDQDMFIQIS 179 Query: 182 SNPDNS 187 +S Sbjct: 180 RELWDS 185 >gi|237746742|ref|ZP_04577222.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229378093|gb|EEO28184.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 220 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 119/203 (58%), Gaps = 16/203 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FY F+ + +++ VVT RNP+++V L+ +F A L++LL AEF+A+I L+ Sbjct: 1 MEFETVLFYAFAAILTLAALRVVTSRNPVHAVLYLVLSFFTGAALWILLKAEFLALILLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115 VYVGAV+V FLF++MM+DI++ + ++ + F+G LIV + ++F Sbjct: 61 VYVGAVMVLFLFVVMMMDIELGELKRIARKNLALALFVG----GLIVLEMSAVIFRGFFA 116 Query: 116 ---SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 A + SR+ IGK L+T Y + +EI+ ILL+++I A+ L +R R D + Sbjct: 117 LDLHAPDDASRI----GLTSEIGKALFTDYLFSVEIAAIILLVALIAAVTLTIRRRSDAR 172 Query: 173 RQDISKQLESNPDNSIVMVKVKS 195 S + P++ + +V++K+ Sbjct: 173 YTSASVAIRVRPEDRLRVVEMKA 195 >gi|239811642|gb|ACS27129.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo] gi|239811682|gb|ACS27168.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo] gi|288871938|dbj|BAI70624.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo] Length = 204 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 17/202 (8%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFYLF+ + +IS+F+ +TV NP++SV LI FV +A + LL+ EF++++ +++YVGA+ Sbjct: 6 FFYLFAGLILISAFMTITVSNPVHSVLFLILVFVGSAAVLLLMEVEFLSLMFIIIYVGAI 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFF---------IGILAAELIVCASNF 112 V FLF++MMLDI + + R GFLG F + A + V +S Sbjct: 66 AVLFLFVVMMLDIKLSSSNNNYLRYLSIGGFLGFLFFVETYYLVETSVFAPQ--VDSSLV 123 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + S + ++RL N+E +G+ LYT Y + I+G +LL+ MIGAIVL L K Sbjct: 124 LESSYQDWITRLD-TLTNMECLGQFLYTYYFFHFLIAGIVLLVGMIGAIVLTLHVNHTSK 182 Query: 173 RQDISKQLESNPDNSIVMVKVK 194 Q I KQL N+ + + Sbjct: 183 NQLICKQLSRQVKNATFLTTIS 204 >gi|257095310|ref|YP_003168951.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047834|gb|ACV37022.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 200 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 115/186 (61%), Gaps = 11/186 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY S + + + V+T RNP+++ L+ AF A+G+++LL AEF+AM ++ Sbjct: 1 MEFKTFVFYFLSAILVFAGLRVITARNPVHAALFLVLAFFTASGVWILLQAEFLAMALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAEL-IVCASNFMV 114 VYVGAV+V FLF++MMLDI+++ R + GF LGS ++ AE+ +V N++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINLD----RLREGFWSYLPLGSIIALLMVAEMGLVLGGNYLG 116 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 E + + +NV+ +G++++T+Y YP E++ ILL+ ++ A+ L R +R K Sbjct: 117 LF-ESSVRQTGADESNVQAVGRLMFTEYVYPFELASVILLVGIVAAVALTQRGKRKNKAV 175 Query: 175 DISKQL 180 + S+Q+ Sbjct: 176 NPSQQV 181 >gi|33592016|ref|NP_879660.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis Tohama I] gi|33597902|ref|NP_885545.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella parapertussis 12822] gi|33602807|ref|NP_890367.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella bronchiseptica RB50] gi|33571660|emb|CAE41153.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis Tohama I] gi|33574331|emb|CAE38667.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella parapertussis] gi|33577249|emb|CAE35806.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella bronchiseptica RB50] gi|332381432|gb|AEE66279.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis CS] Length = 215 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 73/198 (36%), Positives = 119/198 (60%), Gaps = 7/198 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ +F+ +I++F V+T R+P+ +V LI AF NAA +++LLGAEF+A++ ++ Sbjct: 1 MTFTTVLFYILAFVLVIAAFRVITARSPVTAVLHLILAFANAAMIWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VYVGAV+V FLF++MMLDI I+ + G +G++ ++V F++ S Sbjct: 61 VYVGAVMVLFLFVVMMLDIRID----SLRDGLKTYLPLGLVIGVVLVLEMAFVLGSTWYG 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 G + + NN +G+V+YTQY Y +E+ +LL+ M+ AI L LR RRD K D Sbjct: 117 AGPQAPVAGDYNNARALGEVMYTQYVYAIEVGAALLLVGMVAAIALTLRRRRDAKYNDPV 176 Query: 178 KQLESNPDNSIVMVKVKS 195 + + MVK+ + Sbjct: 177 AAVRVRAKDRFRMVKMTA 194 >gi|126695328|ref|YP_001090215.1| NADH dehydrogenase subunit 6 [Oscarella carmela] gi|317097411|ref|YP_004123616.1| NADH dehydrogenase subunit 6 [Oscarella malakhovi] gi|116876184|gb|ABK30948.1| NADH dehydrogenase subunit 6 [Oscarella carmela] gi|312162788|gb|ADO51545.1| NADH dehydrogenase subunit 6 [Oscarella malakhovi] Length = 197 Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 112/186 (60%), Gaps = 14/186 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ IIS +V++ NPI+SVF LI F+ A+ LF+LLG +F+A+I L+VYVGA+ Sbjct: 5 FYIFALGIIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVC---ASNFMVFSAEGELSR 123 + FLF+IMML++ D+E +GS +L E+++ A+ + + E R Sbjct: 65 ILFLFVIMMLNLTDLEGGGDMSNYIPIGSIIGVLLLFEVLIMGREATGYNYRDIDHECLR 124 Query: 124 ----------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + K +N+E +G++LYT Y Y I+ FILL++MIGAIVL ++KR Sbjct: 125 GGVNAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELKR 184 Query: 174 QDISKQ 179 QD+ Q Sbjct: 185 QDLFTQ 190 >gi|317097235|ref|YP_004123364.1| NADH dehydrogenase subunit 6 [Plakortis simplex] gi|308912757|gb|ADO51513.1| NADH dehydrogenase subunit 6 [Plakortis simplex] Length = 197 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 14/190 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-------FFIGILAAELIVCA------SNFM 113 + FLF+IMML++ D+E +GS F I I+ E IV + +NFM Sbjct: 65 ILFLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNGDTDYANFM 124 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++S + K +N+E +G+VLYT Y Y ++ FILL++MIGAIVL ++KR Sbjct: 125 DVLDFSDVSLEIIKFSNIEALGRVLYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184 Query: 174 QDISKQLESN 183 QD+ Q+ N Sbjct: 185 QDLFIQISRN 194 >gi|237748882|ref|ZP_04579362.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229380244|gb|EEO30335.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 211 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 118/199 (59%), Gaps = 8/199 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY+F + ++++ V+T R+P+++V L+ +F A +++LL AEF+A+I L+ Sbjct: 4 MQLTNVLFYVFGAIMVLAALRVITSRHPVHAVLYLVLSFFTGAAIWILLKAEFLALILLL 63 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VYVGAV+V FLF++MM+D+D+ + ++ + + +G+ IV + ++F Sbjct: 64 VYVGAVMVLFLFVVMMMDLDLTELKRAARKNMISATIVGV----AIVLEMSAVLFRGFWM 119 Query: 118 -EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + + K IGK L+T Y + +EI+ ILL+++I A+ L R R D K Sbjct: 120 IDSHVPKSASKIGLTAEIGKALFTDYLFNVEIAAIILLVALIAAVTLTFRKRTDAKYTSA 179 Query: 177 SKQLESNPDNSIVMVKVKS 195 +K + ++ I +V++K+ Sbjct: 180 NKAIHVRAEDRIRIVEMKA 198 >gi|164421121|ref|YP_001648416.1| NADH dehydrogenase subunit 6 [Cinachyrella kuekenthali] gi|158938903|gb|ABW83832.1| NADH dehydrogenase subunit 6 [Cinachyrella kuekenthali] Length = 179 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 111/174 (63%), Gaps = 7/174 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ +IS +V++ NP++SV L+ AF+ AAGLF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYLFALSIVISGVMVISALNPVHSVLWLVVAFIGAAGLFILLEVDFLALILLIVYVGAIA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGS-FFIGIL-AAELIVCASNFMVFSAEGELSRLV 125 + FLF+IMML ++ E + +L + F IG++ +E+++ + S + + Sbjct: 65 ILFLFVIMML--NLTGLEGTDRSNYLPTGFIIGVVFLSEVLILQTR---ISMGVDPNWNF 119 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + N+E +G+VLYT Y Y ++ FILL++M+GAIVL + +KRQDI Q Sbjct: 120 MEAPNIEVLGRVLYTNYCYLFILASFILLVAMMGAIVLTHDTKIRVKRQDIFLQ 173 >gi|317134340|ref|YP_004123126.1| NADH dehydrogenase subunit 6 [Oscarella microlobata] gi|308912655|gb|ADO51418.1| NADH dehydrogenase subunit 6 [Oscarella microlobata] Length = 197 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 14/186 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ IIS +V++ NPI+SVF LI F+ A+ LF+LLG +F+A+I L+VYVG + Sbjct: 5 FYMFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGXIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119 + FLF+IMML++ D+E +GS +L E+++ +S Sbjct: 65 ILFLFVIMMLNLTDLEGGGDMSNYIPIGSVIGVLLLFEVLIMGREATAYSYRDIDHECLK 124 Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + S + K +N+E +G+VLYT Y Y I+ FILL++MIGAIVL ++KR Sbjct: 125 GGVDAWDTSIEIIKSSNIEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHELGAELKR 184 Query: 174 QDISKQ 179 QD+ Q Sbjct: 185 QDLFIQ 190 >gi|253807608|gb|ACT36186.1| NADH dehydrogenase subunit 6 [Helicosporidium sp. ex Simulium jonesi] Length = 207 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 30/199 (15%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FY+F+ ++S V+ RNP+YSV LI F NA+GL +LLG +F AMI LVVYVG Sbjct: 2 DLLFYIFASSLLLSGVFVIQSRNPVYSVLFLILGFFNASGLLVLLGLDFFAMIFLVVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKR--------GFLGSFFIGILAAELIVC-------- 108 A+ V FLF++MML+I +E +K R GFL F + IL I+ Sbjct: 62 AIAVLFLFVVMMLNIKVEEFHEKKLRYLPVGGILGFLFLFEVLILTNHDIISLVPYELNT 121 Query: 109 --------ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 +NF+ +S+ S N + +G ++YT Y Y ++ ILL++MIGA Sbjct: 122 SYLKDLFNQTNFIDWSSHYSTS------NTIHALGNIIYTYYFYFFLMASLILLVAMIGA 175 Query: 161 IVLMLRHRRDIKRQDISKQ 179 IVL ++ +K+Q + Q Sbjct: 176 IVLTMQKNLQVKKQQVYLQ 194 >gi|91208862|ref|YP_539023.1| NADH dehydrogenase subunit 6 [Physcomitrella patens] gi|90991402|dbj|BAE93094.1| NADH dehydrogenase subunit 6 [Physcomitrella patens] Length = 201 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 114/200 (57%), Gaps = 23/200 (11%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +FS +A++SS +V+ +NP++SV I F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFSVFSSIALVSSVMVIRAKNPVHSVLFFILVFFNTSGLLVLLGLDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKR----GFLGSFF------------IGILAAELIVC 108 + V FLF++MML+I I E+ E + G +G F I IL +L Sbjct: 62 IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGVIFLLEIFFIVDNDYIPILPTKL--- 118 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 ++ ++ ++ E + N+E +G +LYT Y +S ILL++MIGAIVL + Sbjct: 119 STTYLTYTVYAEKIQ---SWTNLETLGNLLYTTYFVLFLVSSLILLVAMIGAIVLTMHKT 175 Query: 169 RDIKRQDISKQLESNPDNSI 188 +KRQD+ +Q + N+I Sbjct: 176 TQVKRQDVFRQNAIDFKNTI 195 >gi|148361093|ref|YP_001252300.1| NADH dehydrogenase I subunit J [Legionella pneumophila str. Corby] gi|148282866|gb|ABQ56954.1| NADH dehydrogenase I, J subunit [Legionella pneumophila str. Corby] Length = 219 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 22/211 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ + ++S+ +V++ NP+ V L+ F +A L++L AEF+A+I ++VYVGAV+ Sbjct: 10 FYIFALLTVLSALMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVGAVM 69 Query: 68 VFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVC----------------- 108 FLF++MML+IDIE + K F G + +L L+V Sbjct: 70 TLFLFVVMMLNIDIESMKSHLIKYLPF-GLIIVALLTGLLMVAIPKDIFKNSVQIQEKPL 128 Query: 109 --ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +S M S + EL +N E +G VLYT Y EI+ ILL++++ AI L+ R Sbjct: 129 SVSSQLMDLSTQDELVPPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLVHR 188 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQDI++Q+ + + ++ +KS K Sbjct: 189 GAIRSKRQDITQQIMTRRAERVKLISMKSEK 219 >gi|54298763|ref|YP_125132.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str. Paris] gi|296108423|ref|YP_003620124.1| NADH dehydrogenase I chain J [Legionella pneumophila 2300/99 Alcoy] gi|53752548|emb|CAH13980.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str. Paris] gi|295650325|gb|ADG26172.1| NADH dehydrogenase I chain J [Legionella pneumophila 2300/99 Alcoy] Length = 219 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 22/211 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ + ++S+ +V++ NP+ V L+ F +A L++L AEF+A+I ++VYVGAV+ Sbjct: 10 FYIFALLTVLSALMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVGAVM 69 Query: 68 VFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVC----------------- 108 FLF++MML+IDIE + K F G + +L L+V Sbjct: 70 TLFLFVVMMLNIDIESMKSHLIKYLPF-GLIIVALLTGLLMVAIPKDLFKNSVQIQEKPL 128 Query: 109 --ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +S M S + EL +N E +G VLYT Y EI+ ILL++++ AI L+ R Sbjct: 129 SVSSQLMDLSTQDELVPPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLVHR 188 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQDI++Q+ + + ++ +KS K Sbjct: 189 GAIRSKRQDITQQIMTRRAERVKLISMKSEK 219 >gi|114330934|ref|YP_747156.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosomonas eutropha C91] gi|114307948|gb|ABI59191.1| NADH dehydrogenase subunit J [Nitrosomonas eutropha C91] Length = 201 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 127/204 (62%), Gaps = 12/204 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ Q FY + + II + V+T+RNP+YSV L+ AFV ++GL++LL AEF+A+ +V Sbjct: 1 MIFQDFVFYSLASVVIICALGVITLRNPVYSVLLLVLAFVTSSGLWILLEAEFLAIALVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++ + + GF F G + A I+ MV ++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINLD----QMREGFWKWFPFGAILA-FIMTVEMSMVLMSKQF 115 Query: 121 LSRLV----FKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 S ++ +K +N + +G+++YT+Y Y E++ ILL++M+ AI + LRHR D K Sbjct: 116 SSEIIQTPEYKSVDYSNTKELGRLIYTEYVYVFELAAVILLVAMVAAIAITLRHRTDKKS 175 Query: 174 QDISKQLESNPDNSIVMVKVKSGK 197 + S+Q+ + + + ++ + + K Sbjct: 176 SNASRQIAVSRNERLKVISMPAEK 199 >gi|164420963|ref|YP_001648530.1| NADH dehydrogenase subunit 6 [Callyspongia plicifera] gi|158668102|gb|ABW76564.1| NADH dehydrogenase subunit 6 [Callyspongia plicifera] Length = 183 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/185 (43%), Positives = 113/185 (61%), Gaps = 11/185 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ LFF +F+F AIIS F V+TV +P+ SV LI F++A+ LF+LL EF+A I L+VY Sbjct: 1 MEGLFF-IFAFGAIISGFKVITVFSPVASVLWLIMTFISASALFILLEVEFIAFIFLIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGA+ + FLF+IMML++ V F IG++ I+ F+ + +G Sbjct: 60 VGAIAILFLFVIMMLNLTEMVIFSNAANYFSAGLIIGVVFLFEIL---TFLKGTIDGGRM 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDI--- 176 + LV N+E +G+VLYT Y Y IS FILL++MIGAI+L H +D K QDI Sbjct: 117 VQYLVVPNPNIEVLGRVLYTDYYYLFIISSFILLVAMIGAIILTHDHIIQDRKGQDIFVQ 176 Query: 177 -SKQL 180 S+QL Sbjct: 177 TSRQL 181 >gi|253998392|ref|YP_003050455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus sp. SIP3-4] gi|313200469|ref|YP_004039127.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus sp. MP688] gi|253985071|gb|ACT49928.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus sp. SIP3-4] gi|312439785|gb|ADQ83891.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus sp. MP688] Length = 213 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 113/195 (57%), Gaps = 12/195 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + + + + V+T RNP+++ L+ AF AAG++LLL AEF+A+ ++VYVGAV+ Sbjct: 8 FYVLAAILLFAGLRVITSRNPVHAALHLVLAFFTAAGIWLLLEAEFLAIALVLVYVGAVM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-------LAAELIVCASNFMVFSAEGE 120 V FLF++MMLDI+++ + + GF + I + L +I+ + +F V Sbjct: 68 VLFLFVVMMLDINLD----KLREGFWEALPIALPVGILMTLEMVMILGSKHFGVDRVAAP 123 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 N E +G+ LYT Y P E++ +LL++++ AI L LR R+D K D ++Q+ Sbjct: 124 TPHPAGYSNTAE-LGRQLYTDYLLPFELASVVLLVAIVAAIALTLRDRKDSKFIDPAEQV 182 Query: 181 ESNPDNSIVMVKVKS 195 + + I MV + + Sbjct: 183 KVKRADRIRMVSMPA 197 >gi|22550345|ref|NP_689370.1| NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum] gi|22417011|gb|AAM96610.1|AF494279_15 NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum] Length = 195 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 116/202 (57%), Gaps = 20/202 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F LFS +A++S+ +V++ +NP++S+ LI F NA+ L +LLG +F AMI LVVYVG Sbjct: 2 TILFCLFSSIALVSAGMVISAKNPVHSILFLILVFCNASALLVLLGLDFFAMIFLVVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRG----------FLGSFFIGI--LAAELIVCASNF 112 A+ V FLF++MML+I+I R FL F+ + L I+ A + Sbjct: 62 AIAVLFLFVVMMLNINIAEIHENVVRYLPIGGIIALIFLLEMFLVVEGLPTSTIIQAPAY 121 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +F+ + E N+E +G +LYT Y I ILL++MIGAIVL + +K Sbjct: 122 TIFAEKIE------SLTNLEALGNLLYTTYFLLFLICSLILLIAMIGAIVLTMHKTTKVK 175 Query: 173 RQDISKQLESNPDNSIVMVKVK 194 RQD+ L+++ D S + K++ Sbjct: 176 RQDVF--LQNSVDFSTTIRKIR 195 >gi|327195240|ref|YP_004339022.1| NADH dehydrogenase subunit 6 [Coccomyxa sp. C-169] gi|325070736|gb|ADY75464.1| NADH dehydrogenase subunit 6 [Coccomyxa sp. C-169] Length = 205 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/193 (39%), Positives = 111/193 (57%), Gaps = 17/193 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF Y FS +A+IS +V+ RNP++SV LI F N+AGL +LLG EF AMI LVVY Sbjct: 1 MTSLF-YFFSSLALISGVMVIQARNPVHSVLFLILVFFNSAGLLVLLGLEFFAMIFLVVY 59 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------- 114 VGA+ V FLF++MML+I + E++E R + +G + E+ + N ++ Sbjct: 60 VGAIAVLFLFVVMMLNIKLAEISEKRLRYLPIGGLLGMLFLGEIFLIVDNDLIPWLGSAH 119 Query: 115 FSAEGELSRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S ELS + + +E +G ++YT Y Y ++ ILL++MIGAIVL L Sbjct: 120 LSEWAELSAMEWTPWSHLAEGVTPLEGVGVIIYTYYFYFFLLASLILLVAMIGAIVLTLH 179 Query: 167 HRRDIKRQDISKQ 179 +K Q++ Q Sbjct: 180 KGVAVKHQEVFHQ 192 >gi|160872240|ref|ZP_02062372.1| NADH-quinone oxidoreductase, j subunit [Rickettsiella grylli] gi|159121039|gb|EDP46377.1| NADH-quinone oxidoreductase, j subunit [Rickettsiella grylli] Length = 198 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 6/197 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +QS F++F+ + I S+ + + RN + S L+ F +AA L++LL AEF+ +I ++VY Sbjct: 4 IQSCVFFIFAGVLITSALMTIISRNSVRSALFLVLTFFSAAALWILLEAEFLGLILILVY 63 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV+ FLF+IM L++D + K+ GF+ +L +++ VF G Sbjct: 64 VGAVMTLFLFVIMTLNLD----KTEKQYGFVPYLVWAVLGVLILLALLIDAVFPLTGNKI 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 L L +N + +G VLYTQYAYP EI+G +LL+ +I I L R +R K QL Sbjct: 120 LIPLAANESNTQALGNVLYTQYAYPFEITGVLLLVGIIATIALSFREKRLNKAISPELQL 179 Query: 181 ESNPDNSIVMVKVKSGK 197 + P + + ++K+ + K Sbjct: 180 KIKPSDRLRIIKMPTEK 196 >gi|63025141|ref|YP_232806.1| NADH dehydrogenase subunit 6 [Tethya actinia] gi|37961475|gb|AAP59065.1| NADH dehydrogenase subunit 6 [Tethya actinia] Length = 187 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/195 (40%), Positives = 119/195 (61%), Gaps = 24/195 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++LF YLF+F IIS +V++ NP++S+ LI AF +AA LF+ L +F+A I L+VY Sbjct: 1 MEALF-YLFAFSVIISGIMVISALNPVHSILWLIVAFSSAAVLFIFLEVDFIAFIFLIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGEL 121 VGA+ + FLF+IMML++ + ++ F IG ++ ++FS+ G+L Sbjct: 60 VGAIAILFLFVIMMLNLTDLADSFQDMSNYVPIGFLIG------VIIFFKVLIFSS-GKL 112 Query: 122 S---------RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S R F K +N+E +G+VLYT Y Y ++ F+LL++MIGAIVL R + Sbjct: 113 SGLSGVINDFRWDFLEKVSNIEVLGRVLYTDYYYYFLLASFVLLVAMIGAIVLTHDLRVE 172 Query: 171 IKRQD----ISKQLE 181 IKRQD IS+QL+ Sbjct: 173 IKRQDIFIQISRQLK 187 >gi|220924014|ref|YP_002499316.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium nodulans ORS 2060] gi|219948621|gb|ACL59013.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium nodulans ORS 2060] Length = 206 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 118/195 (60%), Gaps = 13/195 (6%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + + S F+V+ RNP+ SV LI AFVNAAGLF+L+GAEF+AMI +VVYVGAV V FLF+ Sbjct: 14 ITVASGFMVIASRNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVVVYVGAVAVLFLFV 73 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAE-----LIVCASNFMVFSAEGELSRLVFKG 128 +MMLD+D AE R+ GF +G L L++ ++ + + V G Sbjct: 74 VMMLDVDF--AELRQ--GFQDYLPVGALIGAVFLVELLLVVGSWAIDPGLVQAPLAVAPG 129 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N + +G VLYT Y + +I+G +LL++MIGAIVL LR R +KRQD++ Q Sbjct: 130 GDRITNTQALGLVLYTNYFFFFQIAGLVLLVAMIGAIVLTLRERPGVKRQDVTVQNARTQ 189 Query: 185 DNSIVMVKVKSGKGI 199 ++ + V + +G+ Sbjct: 190 AMAVELRNVPTRQGV 204 >gi|269958708|ref|YP_003328495.1| NADH dehydrogenase subunit J [Anaplasma centrale str. Israel] gi|269848537|gb|ACZ49181.1| NADH dehydrogenase subunit J [Anaplasma centrale str. Israel] Length = 200 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/200 (37%), Positives = 120/200 (60%), Gaps = 11/200 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S F+ F+ +A++S+ V+ + NPIYSV SLI F ++ +F++LGAE VAM+ ++VY Sbjct: 1 MLSFLFFCFAGVAVLSAVGVILLPNPIYSVLSLILTFFVSSAVFIMLGAELVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL---IVCASNFMVFSAEG 119 VGAV V FLF++MMLDI + R + G + + +G+ L + S F V SA Sbjct: 61 VGAVAVLFLFVVMMLDI----SRVRSRHGLVKRYPLGVACMLLFFGCMVYSIFHVKSATI 116 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML---RHRRDIKRQDI 176 S V NV IG LYT+YAY +++G +LL++ +G++VL+ R+ +K QD+ Sbjct: 117 GASEGVVGVGNVFLIGSRLYTEYAYAFQLAGVLLLIAGVGSLVLVAGGGDGRKSLK-QDV 175 Query: 177 SKQLESNPDNSIVMVKVKSG 196 S+Q+ + ++ V +G Sbjct: 176 SQQIGRSSKIRLLSPGVGAG 195 >gi|317097125|ref|YP_004123257.1| NADH dehydrogenase subunit 6 [Plakina jani] gi|308912726|gb|ADO51484.1| NADH dehydrogenase subunit 6 [Plakina jani] Length = 197 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 14/190 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNMDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-------FFIGILAAELIVCAS------NFM 113 + FLF+IMML++ D+E A +GS F I I+ E IV ++ N M Sbjct: 65 ILFLFVIMMLNLTDLEGAGDMSNYIPIGSVMGVFLLFEIFIMGREAIVYSNRDTDYENLM 124 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++S + K +N+E +G++LYT Y Y ++ FILL++MIGAIVL ++KR Sbjct: 125 DVLDFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184 Query: 174 QDISKQLESN 183 QD+ Q N Sbjct: 185 QDLFIQTSRN 194 >gi|317134283|ref|YP_004123166.1| NADH dehydrogenase subunit 6 [Pseudocorticium jarrei] gi|308912684|gb|ADO51445.1| NADH dehydrogenase subunit 6 [Pseudocorticium jarrei] Length = 197 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 108/186 (58%), Gaps = 14/186 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + IIS +V++ NPI+SVF LI F A+ LF+LLG +F+A+I L+VYVGA+ Sbjct: 5 FYILALGVIISGIMVISALNPIHSVFWLIVVFSGASALFILLGIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119 + FLF+IMML++ D+E +GS +L E+++ +S Sbjct: 65 ILFLFVIMMLNLTDLEGDGDMSNYIPIGSIIGVLLLFEVLIMGREATAYSYRDIDHECLK 124 Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + S + K +N+E +G++LYT Y Y I+ FILL++MIGAIVL ++KR Sbjct: 125 RGGDAWDASIEIIKTSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELKR 184 Query: 174 QDISKQ 179 QD+ Q Sbjct: 185 QDLFTQ 190 >gi|21231951|ref|NP_637868.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767922|ref|YP_242684.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris str. 8004] gi|21113681|gb|AAM41792.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573254|gb|AAY48664.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas campestris pv. campestris str. 8004] Length = 219 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 121/207 (58%), Gaps = 20/207 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 5 TIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 64 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC------------ASNF 112 AV+V FLF++MMLDID R + G++ +G++ A ++ A+ F Sbjct: 65 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPVGVIVAVAMLAQMVTLIGVKARLATPF 120 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 V +A + + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Sbjct: 121 PVDNAAAQAT----DTSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 Q+ S+Q + + MVK+ K + Sbjct: 177 MQNASEQSRVRSTDRLRMVKMAVEKPV 203 >gi|29654730|ref|NP_820422.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA 493] gi|153207244|ref|ZP_01946008.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154707308|ref|YP_001423966.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii Dugway 5J108-111] gi|161831359|ref|YP_001597283.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA 331] gi|165918812|ref|ZP_02218898.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA 334] gi|212218222|ref|YP_002305009.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuK_Q154] gi|29541998|gb|AAO90936.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii RSA 493] gi|120576732|gb|EAX33356.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154356594|gb|ABS78056.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii Dugway 5J108-111] gi|161763226|gb|ABX78868.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA 331] gi|165917536|gb|EDR36140.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA 334] gi|212012484|gb|ACJ19864.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuK_Q154] Length = 201 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 67/194 (34%), Positives = 121/194 (62%), Gaps = 10/194 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++F+ + I ++ +V+ RNP+++V L+ AF +A L++++ AEF+A++ + VYVGAV+ Sbjct: 9 FFIFAAVLIAAAAMVIISRNPVHAVLFLVLAFFASAVLWMMMQAEFLALVLIFVYVGAVM 68 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS 122 FLF++MML+ID+ + + R G + + IG++ +IV +F V A L Sbjct: 69 TLFLFVVMMLNIDLSDLQQKFVRFLPFGLIAMALLIGMMV--VIVSPRHFTV--ATAHLP 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQLE 181 + +NV+ +G +LY Y YP EI+ ILL+++I AI L R+ + K Q + +QLE Sbjct: 125 HVASNFSNVKAMGSLLYVDYFYPFEIAAVILLVAIIAAITLAFHGRKPNTKSQRVREQLE 184 Query: 182 SNPDNSIVMVKVKS 195 + +N + ++K+K+ Sbjct: 185 AKKENRLRVIKMKT 198 >gi|254496131|ref|ZP_05109030.1| NADH dehydrogenase I, J subunit [Legionella drancourtii LLAP12] gi|254354672|gb|EET13308.1| NADH dehydrogenase I, J subunit [Legionella drancourtii LLAP12] Length = 219 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 116/210 (55%), Gaps = 20/210 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ + + S+ +V+T NP+ V L+ F ++ L++L AEF+A+I ++VYVGAV+ Sbjct: 10 FYVFAALTVGSALMVITQNNPVRCVLFLVLTFFTSSVLWILAEAEFLALILVLVYVGAVM 69 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVC--ASNFM----------- 113 FLF++MML+IDIE KR G + +L L+V A F Sbjct: 70 TLFLFVVMMLNIDIESMRGHFKRYLPFGLILVALLTGLLMVATPAGTFKDNVERQQNAGQ 129 Query: 114 -VFSAEGELSRL-----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +G S L + + +N E +G VLYT Y E++ +LL++++ AI L+ R Sbjct: 130 PILIQQGRTSELKTEPQLIEMSNTEALGMVLYTDYFLAFELAAVLLLVAIVSAITLVHRG 189 Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R KRQDI +Q+ + D + +V +K+ K Sbjct: 190 PRQSKRQDIKQQIMTRRDERVKLVSMKAEK 219 >gi|164421078|ref|YP_001648623.1| NADH dehydrogenase subunit 6 [Agelas schmidti] gi|158938993|gb|ABW83916.1| NADH dehydrogenase subunit 6 [Agelas schmidti] Length = 189 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 113/189 (59%), Gaps = 26/189 (13%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F+ I+S +V++ NP++SVF LI AF +A+ LF+LL EF+A++ L+VYVGA+ Sbjct: 6 FYFFALSVILSGIMVISAFNPVHSVFWLILAFTSASALFILLEVEFIALMFLIVYVGAIA 65 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-FFIGILAAELIVC-------ASNFMVFSAE 118 + FLF+IMML++ D E+ FL + F IG++ LI C +F FS + Sbjct: 66 ILFLFVIMMLNLMDFEMGGDMSN--FLATGFLIGVVF--LINCRVVSHLGRPSFYSFSWD 121 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD------IK 172 V K N+E IG+VLYT Y Y ++ FILL++M+GAIV L H R+ +K Sbjct: 122 -----FVGKTTNIEVIGRVLYTNYYYLFILASFILLVAMVGAIV--LTHDRESIVPSSLK 174 Query: 173 RQDISKQLE 181 RQ I Q+ Sbjct: 175 RQTIFAQIS 183 >gi|224824814|ref|ZP_03697921.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Lutiella nitroferrum 2002] gi|224603307|gb|EEG09483.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Lutiella nitroferrum 2002] Length = 214 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 105/178 (58%), Gaps = 10/178 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ S + I + V+T +NP+++ L+ AF +AG +LLL +EF+A+ ++ Sbjct: 1 MSFPTVVFYVLSAILIFAGLRVITAKNPVHAALYLVLAFFTSAGHWLLLESEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+ E + + GF + + ++V ++ S E Sbjct: 61 VYVGAVMVLFLFVVMMLDINFE----KLREGFWKNAPLAGTVGLIMVGEMVLILMSPEAS 116 Query: 121 L------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 L + L +N+ +G+++YT Y +P E++ +LL+ M+ AI L +R R+D K Sbjct: 117 LGSYKGAAPLAADASNIRELGRLIYTTYLWPFELAAVVLLVGMVAAIALTMRKRKDTK 174 >gi|293603928|ref|ZP_06686343.1| NADH-quinone oxidoreductase subunit J [Achromobacter piechaudii ATCC 43553] gi|292817765|gb|EFF76831.1| NADH-quinone oxidoreductase subunit J [Achromobacter piechaudii ATCC 43553] Length = 218 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/198 (35%), Positives = 120/198 (60%), Gaps = 7/198 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + +I++F V+T R+P+ +V LI AF NAA L++LLGAEF+A++ ++ Sbjct: 1 MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFSNAAMLWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---A 117 VYVGAV+V FLF++MMLDI ++ ++G +G++ ++V +F++ S Sbjct: 61 VYVGAVMVLFLFVVMMLDIRMDA----MRQGLKTYLPLGLVIGLVLVLEMSFVLGSTWYG 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 G + + NN +G+ +YTQY Y +E+ +LL+ M+ A+ L LR RRD+K D Sbjct: 117 AGPQAPVAGDYNNARALGEAMYTQYIYAVEVGAALLLVGMVAAVALTLRRRRDVKYNDPV 176 Query: 178 KQLESNPDNSIVMVKVKS 195 + + MVK+ + Sbjct: 177 AAVRVRSKDRFRMVKMPA 194 >gi|188991038|ref|YP_001903048.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris str. B100] gi|167732798|emb|CAP50992.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas campestris pv. campestris] Length = 219 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 121/207 (58%), Gaps = 20/207 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 5 TIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 64 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC------------ASNF 112 AV+V FLF++MMLDID R + G++ +G++ A ++ A+ F Sbjct: 65 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPVGVIVAVAMLAQMVTLIGVKGRLATPF 120 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 V +A + + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Sbjct: 121 PVDNAAAQAA----DTSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGKGI 199 Q+ S+Q + + MVK+ K + Sbjct: 177 MQNASEQSRVRSTDRLRMVKMAVEKPV 203 >gi|313768501|ref|YP_004062177.1| NADH dehydrogenase subunit 6 [Gracilariophila oryzoides] gi|312844628|gb|ADR03193.1| NADH dehydrogenase subunit 6 [Gracilariophila oryzoides] Length = 202 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 22/205 (10%) Query: 5 SLFFYL-FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 LF YL FS I+SS +V+++ N ++S+ LI F N AGL LLLGAEF++ + L+VYV Sbjct: 4 DLFLYLLFSSFTIVSSLMVISLSNAVHSILFLILVFCNVAGLLLLLGAEFLSFMLLIVYV 63 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--------ILAAELIVCASNFMVF 115 GA+ V FLF++MML++ +K LG F IG IL+ +L+ ++F F Sbjct: 64 GAIAVLFLFVVMMLNV-------KKTSTNLGFFAIGPVGLITFFILSNQLLGVFNDFDTF 116 Query: 116 SAEGE---LSRLVFKGNNVENI---GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + + NN+ NI GKVLYT+Y++ +SG ILL++M+GAIVL + R Sbjct: 117 GLKQKDLIWISWITEHNNITNIQAVGKVLYTKYSFLFILSGLILLVAMLGAIVLTMHQRT 176 Query: 170 DIKRQDISKQLESNPDNSIVMVKVK 194 D+K+Q I QL N SI + ++ Sbjct: 177 DVKKQRIELQLSRNFGGSIKFINLR 201 >gi|114321110|ref|YP_742793.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Alkalilimnicola ehrlichii MLHE-1] gi|114227504|gb|ABI57303.1| NADH dehydrogenase subunit J [Alkalilimnicola ehrlichii MLHE-1] Length = 198 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 111/182 (60%), Gaps = 9/182 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+F+ + + ++ +V+T RNP++ L+ AF N+A L+++ GAEF+ + +VVY Sbjct: 1 MEQVIFYVFAAVLLFAATMVITARNPVHCALFLVLAFFNSAILWVMAGAEFLGIALVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-----A 117 VGAV+V FLF++MMLDI V + GF G L A L+ ++ S A Sbjct: 61 VGAVMVLFLFVVMMLDIGRSV----HQEGFTRYLPAGALVAVLMAVQLGLVLVSDHTGIA 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 G + + +N+ +G +LYT Y YP EI+G ILL+++I AIVL LR R K QD++ Sbjct: 117 GGVIPEVPADVDNIRGLGGLLYTTYVYPFEIAGAILLVAIIAAIVLTLRRREGTKHQDVA 176 Query: 178 KQ 179 KQ Sbjct: 177 KQ 178 >gi|15836917|ref|NP_297605.1| NADH dehydrogenase subunit J [Xylella fastidiosa 9a5c] gi|9105137|gb|AAF83125.1|AE003884_10 NADH-ubiquinone oxidoreductase, NQO10 subunit [Xylella fastidiosa 9a5c] Length = 222 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 120/204 (58%), Gaps = 20/204 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS +A+ ++ V++VR+P+Y+V LI F + A ++LL+GAEF+ + ++VYVGAV+ Sbjct: 9 FYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 68 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVC-------ASNFMVF 115 V FLF++MMLDID R + G++ +G+L A +++V A+ F V Sbjct: 69 VLFLFVVMMLDIDTS----RLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPFPVD 124 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +A + + +N+ + L+T + +P E + IL +++I A++L LR R +K QD Sbjct: 125 NAAAQAAH----TSNLTWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQD 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + +V + + + + Sbjct: 181 PSQQTRVKAADRLRIVSMPTEEPV 204 >gi|300113274|ref|YP_003759849.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Nitrosococcus watsonii C-113] gi|299539211|gb|ADJ27528.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus watsonii C-113] Length = 201 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/203 (36%), Positives = 124/203 (61%), Gaps = 13/203 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+F+ + + ++ +VVTVRNP+ + L+ AF +A ++LLL AEF+A++ ++VY Sbjct: 1 MEKTLFYIFAAILLFAATMVVTVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119 +GAV+V FLF++MMLD+++ + GF +G+L A LI MV ++ Sbjct: 61 IGAVMVLFLFVVMMLDMNLAPLQ----EGFARYLPVGLLVAVLIAI-EMIMVLGSKNFGL 115 Query: 120 -ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + V +G NN + +G +LYT Y YP E++ ILL++++ AI L LR RR K QD Sbjct: 116 DQFTVPVARGADYNNTKELGNLLYTVYVYPFELASVILLVAIVAAIALALR-RRPSKTQD 174 Query: 176 ISKQLESNPDNSIVMVKVKSGKG 198 +Q+ P + + +VK+ + K Sbjct: 175 PVQQVRVRPQDRVRLVKMTAEKS 197 >gi|212212191|ref|YP_002303127.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuG_Q212] gi|212010601|gb|ACJ17982.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuG_Q212] Length = 201 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/194 (34%), Positives = 121/194 (62%), Gaps = 10/194 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++F+ + I ++ +V+ RNP+++V L+ AF +A L++++ AEF+A++ + VYVGAV+ Sbjct: 9 FFIFAAVLIAAAAMVIISRNPVHAVLFLVLAFFASAVLWMMMQAEFLALVLIFVYVGAVM 68 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS 122 FLF++MML+ID+ + + R G + + IG++ +IV +F V A L Sbjct: 69 TLFLFVVMMLNIDLSDLQQKFVRFLPFGLIAMALLIGMMV--VIVSPRHFTV--ATAHLP 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQLE 181 + +NV+ +G +LY Y YP EI+ ILL+++I AI L R+ + K Q + +QLE Sbjct: 125 HVASNFSNVKAMGSLLYVDYFYPFEIAAVILLVAIIAAITLAFHGRKPNTKFQRVREQLE 184 Query: 182 SNPDNSIVMVKVKS 195 + +N + ++K+K+ Sbjct: 185 AKKENRLRVIKMKT 198 >gi|289065180|ref|YP_003434232.1| NADH dehydrogenase subunit 6 [Chattonella marina] gi|288871892|dbj|BAI70579.1| NADH dehydrogenase subunit 6 [Chattonella marina] Length = 203 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 112/204 (54%), Gaps = 21/204 (10%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LFFYLFS + +IS+ +V+TV NP++SV LI FV +A + LLL EF++++ +++YVGA Sbjct: 5 LFFYLFSGLVLISATMVITVSNPVHSVLFLILGFVGSAAILLLLKVEFLSLMFVIIYVGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-----FSAEGE 120 + V FLF++MMLDI + +K LG +G ++ + + + FS+ Sbjct: 65 IAVLFLFVVMMLDIKL-----KKSGASLGYTALGAISGLFLFFQFFYFIEKISPFSSSFL 119 Query: 121 LSRL-----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 L L + K N+E +G+ LYT Y + I G +LL+ MIG IVL L Sbjct: 120 LEELFSPYYFDWIDTIDKLTNMECLGQFLYTYYFFHFLIGGILLLVGMIGGIVLTLHVNY 179 Query: 170 DIKRQDISKQLESNPDNSIVMVKV 193 K Q I KQL N+I + V Sbjct: 180 KSKNQLICKQLSRQLKNAIFLTTV 203 >gi|313768527|ref|YP_004062202.1| NADH dehydrogenase subunit 6 [Gracilariopsis andersonii] gi|312844654|gb|ADR03218.1| NADH dehydrogenase subunit 6 [Gracilariopsis andersonii] Length = 202 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 124/206 (60%), Gaps = 22/206 (10%) Query: 5 SLFFYL-FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 LF YL FS AI++S +V+++ N ++SV LI F N AGL LLLGAEF++ + L+VYV Sbjct: 4 DLFLYLLFSSFAILASLMVISLSNAVHSVLFLILVFCNVAGLLLLLGAEFLSFMLLIVYV 63 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--------ILAAELIVCASNFMVF 115 GA+ V FLF++MML++ +K LG F IG IL +L+ ++F F Sbjct: 64 GAIAVLFLFVVMMLNV-------KKTSTNLGFFAIGPIGLITFFILINQLLGIFNDFDTF 116 Query: 116 SAEGE----LSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + +S + N N++ +GKVLYT+Y++ +SG ILL++M+GAIVL + R Sbjct: 117 GLKQKDLIWISWITEHNNLTNIQAVGKVLYTKYSFLFILSGLILLVAMLGAIVLTMHQRT 176 Query: 170 DIKRQDISKQLESNPDNSIVMVKVKS 195 D+K+Q I QL N SI + ++ Sbjct: 177 DVKKQKIELQLNRNFGGSIKFINLRK 202 >gi|164421042|ref|YP_001648672.1| NADH dehydrogenase subunit 6 [Plakortis angulospiculatus] gi|158939032|gb|ABW83952.1| NADH dehydrogenase subunit 6 [Plakortis angulospiculatus] Length = 197 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 14/190 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAITLAILVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119 + FLF+IMML++ D+E +GS L E+ + +V+S E Sbjct: 65 ILFLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNEDTDYTNLT 124 Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++S + K +N+E +G++LYT Y Y ++ FILL++MIGAIVL ++KR Sbjct: 125 DLLDSWDISIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184 Query: 174 QDISKQLESN 183 QD+ Q N Sbjct: 185 QDLFIQTSRN 194 >gi|317097391|ref|YP_004123598.1| NADH dehydrogenase subunit 6 [Plakina crypta] gi|308912604|gb|ADO51370.1| NADH dehydrogenase subunit 6 [Plakina crypta] Length = 197 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 115/193 (59%), Gaps = 14/193 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAITLAVLVSGIMVISALNPIHSVFWLIAGFLGASALFILLNIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-------FFIGILAAELIVCAS------NFM 113 + FLF+IMML++ D+E A +GS F I+ E++V ++ N M Sbjct: 65 ILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEXFIIGREVVVYSNRDSDYENLM 124 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++S + K +N+E +G++LYT Y Y ++ FILL++MIGAIVL ++KR Sbjct: 125 DVLYFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184 Query: 174 QDISKQLESNPDN 186 QD+ Q+ N + Sbjct: 185 QDLFIQMSRNLEQ 197 >gi|328775205|gb|AEB39998.1| NADH dehydrogenase subunit 6 [Funaria hygrometrica] Length = 201 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 23/200 (11%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +FS +A++SS +V+ +NP++SV I F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFSVFSSIALVSSVMVIRAKNPVHSVLFFILVFFNTSGLLVLLGLDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKR----GFLGSFF------------IGILAAELIVC 108 + V FLF++MML+I I E+ E + G +G F I IL +L Sbjct: 62 IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGVIFLLEIFFIVDNDYIPILPTKL--- 118 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 ++ ++ ++ E + N+E +G +LYT Y +S ILL++MIGAIVL + Sbjct: 119 STTYLTYTVYAEKIQ---SWTNLETLGNLLYTTYFVLFLVSSLILLVAMIGAIVLTMHKT 175 Query: 169 RDIKRQDISKQLESNPDNSI 188 +K QD+ +Q + N+I Sbjct: 176 TQVKGQDVFRQNAIDFKNTI 195 >gi|307611650|emb|CBX01338.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila 130b] Length = 219 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 22/211 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ + ++S+ +V++ NP+ V L+ F +A L++L AEF+A+I ++VYVGAV+ Sbjct: 10 FYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWILAEAEFLALILILVYVGAVM 69 Query: 68 VFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVC----------------- 108 FLF++MML+IDIE + K F G + +L L+V Sbjct: 70 TLFLFVVMMLNIDIESMKSHLIKYLPF-GLIIVALLTGLLMVAIPKDLFKNSVQTQEKPL 128 Query: 109 --ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S M S E L +N E +G VLYT Y EI+ ILL++++ AI L+ R Sbjct: 129 SVNSQLMDLSTEDGLVTPKNATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLVHR 188 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQDI++Q+ + + ++ +KS K Sbjct: 189 GAIRSKRQDITQQIMTRRAERVKLISMKSEK 219 >gi|311104667|ref|YP_003977520.1| NADH-quinone oxidoreductase subunit J [Achromobacter xylosoxidans A8] gi|310759356|gb|ADP14805.1| NADH-quinone oxidoreductase subunit J [Achromobacter xylosoxidans A8] Length = 216 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 112/178 (62%), Gaps = 7/178 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + +I++F V+T R+P+ +V LI AF NAA L++LLGAEF+A++ ++ Sbjct: 1 MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFSNAAMLWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---A 117 VYVGAV+V FLF++MMLDI ++ ++G +G++ ++V F++ S Sbjct: 61 VYVGAVMVLFLFVVMMLDIRMDA----LRQGMKTYLPLGLIIGLVMVLEMAFVLGSTWYG 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN +G+ +YTQY Y +E+ +LL+ M+ AI L LR RRD+K D Sbjct: 117 AGPQAPVAGDYNNARALGEAMYTQYVYAIEVGAALLLVGMVAAIALTLRRRRDVKYND 174 >gi|71906597|ref|YP_284184.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Dechloromonas aromatica RCB] gi|71846218|gb|AAZ45714.1| NADH dehydrogenase subunit J [Dechloromonas aromatica RCB] Length = 198 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 109/187 (58%), Gaps = 14/187 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q+ FY S + + +S V+T RNP+++ LI AF G++ LL AEF+A+ ++ Sbjct: 1 MDFQTAVFYFLSAILVFASLRVITARNPVHAALHLILAFFTCGGIWALLQAEFLAIAIIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-------ILAAELIVCASNFM 113 VYVGAV+V FLF++MMLDI+I+ R + GF +G ++ L++ + F Sbjct: 61 VYVGAVMVLFLFVVMMLDINID----RIREGFWNYLPLGALLGLLMVMEMGLVLGSKYFQ 116 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 V +AE + V +N + IG ++++ Y YP E++ ILL+ MI AIVL R + K Sbjct: 117 VPAAEAMVPAGV---SNTKAIGALMFSDYVYPFELASLILLVGMIAAIVLTYRGPKKSKY 173 Query: 174 QDISKQL 180 + ++Q+ Sbjct: 174 TNPNQQV 180 >gi|152979954|ref|YP_001353161.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille] gi|151280031|gb|ABR88441.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille] Length = 213 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 115/202 (56%), Gaps = 8/202 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++++ V+T NP+++ L+ +F +AA L++LL AEF++++ ++ Sbjct: 1 MEFTTVLFYVFSAILVLAAIRVITESNPVHAALFLVLSFCSAAALWMLLKAEFLSIVLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----S 116 VYVGAV+V FLF++MM+DI + + + GF G + +IV ++F Sbjct: 61 VYVGAVMVLFLFVVMMVDIKLT----KLREGFWGYLPLAATIGVVIVLEMALVLFRGFWR 116 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + ++ + N + +GK++YT Y Y EI+ +LL+ MI A+ L +R R+D K Sbjct: 117 SHTQVPEVSANIGNAKELGKLIYTDYLYAFEIAAVLLLVGMIAAVALTMRKRKDSKYFAP 176 Query: 177 SKQLESNPDNSIVMVKVKSGKG 198 + + + +VK+K+ Sbjct: 177 GDAVRVKASDRLRVVKMKADSA 198 >gi|164421028|ref|YP_001648479.1| NADH dehydrogenase subunit 6 [Aplysina fulva] gi|158668077|gb|ABW76540.1| NADH dehydrogenase subunit 6 [Aplysina fulva] Length = 190 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/190 (39%), Positives = 109/190 (57%), Gaps = 14/190 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ LFF LF + S +V++ NP++SV LI AF NA+ LF+LL EF+A+I L++Y Sbjct: 1 MEGLFF-LFGVNVLFSGIMVISALNPVHSVLWLIVAFTNASALFILLNVEFIALIFLIIY 59 Query: 63 VGAVIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-------V 114 VGA+ + FLF+IMML++ D+ +E L IGI+ I N + Sbjct: 60 VGAIAILFLFVIMMLNLADLGGSEDMSNY-LLAGLIIGIVFLFEIWIWQNHQETPPMAFI 118 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 +SA N+E IG++LYT+ Y ++ F+LL++MIGAIVL +IKRQ Sbjct: 119 YSAGINYWDYTAAYTNIEIIGRILYTELYYLFIVASFVLLVAMIGAIVLTHDMGTEIKRQ 178 Query: 175 DI----SKQL 180 DI S+QL Sbjct: 179 DIFIQTSRQL 188 >gi|52842978|ref|YP_096777.1| NADH dehydrogenase I, J subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630089|gb|AAU28830.1| NADH dehydrogenase I, J subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 219 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 22/211 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ + ++S+ +V++ NP+ V L+ F +A L++L AEF+A+I ++VYVGAV+ Sbjct: 10 FYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVGAVM 69 Query: 68 VFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVC----------------- 108 FLF++MML+IDIE + K F G + +L L+V Sbjct: 70 TLFLFVVMMLNIDIESMKSHLIKYLPF-GLIIVALLTGLLMVAIPKDLFKNSVQTQEKPL 128 Query: 109 --ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S M S E L +N E +G VLYT Y EI+ ILL++++ AI L+ R Sbjct: 129 SVNSQLMDLSTEDGLVTPEKATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLVHR 188 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQDI++Q+ + + ++ +KS K Sbjct: 189 GAIRSKRQDITQQIMTRRAERVKLISMKSEK 219 >gi|319779207|ref|YP_004130120.1| NADH-ubiquinone oxidoreductase chain J [Taylorella equigenitalis MCE9] gi|317109231|gb|ADU91977.1| NADH-ubiquinone oxidoreductase chain J [Taylorella equigenitalis MCE9] Length = 263 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 112/198 (56%), Gaps = 7/198 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYL + + + + VV R+P+ V LI AF NA+ L++L+GAEF+ ++ ++ Sbjct: 1 MTFTDILFYLLAIVLLYAGVRVVLARHPVVGVLHLILAFFNASMLWILIGAEFLGLLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 +YVGAV+V FLF++MM+D+ E ++ F IG++ ++V F++ SA Sbjct: 61 IYVGAVMVLFLFVVMMVDVVPETL----RKDFRTYLPIGLVVGGVMVSEIAFILGSAYLD 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 NN +G +Y++Y+YP+++ ILL+ MI AI L LR R++ K +S Sbjct: 117 SSSPKSWPDTYNNTLALGIEMYSKYSYPIQVGALILLVGMIAAIALTLRERKNRKYVLVS 176 Query: 178 KQLESNPDNSIVMVKVKS 195 QL+ + + +V + S Sbjct: 177 DQLKVEAKDRVRLVSLPS 194 >gi|77166014|ref|YP_344539.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosococcus oceani ATCC 19707] gi|254436307|ref|ZP_05049813.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nitrosococcus oceani AFC27] gi|76884328|gb|ABA59009.1| NADH dehydrogenase subunit J [Nitrosococcus oceani ATCC 19707] gi|207087997|gb|EDZ65270.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nitrosococcus oceani AFC27] Length = 201 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 5/199 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+F+ + + ++ +VVTVRNP+ + L+ AF +A ++LLL AEF+A++ ++VY Sbjct: 1 MEKTLFYIFAAILLFAATMVVTVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-AAELIVC--ASNFMVFSAEG 119 +GAV+V FLF++MMLD+++ + R F + +L A E+I+ + NF + Sbjct: 61 IGAVMVLFLFVVMMLDMNLAPLQEGFARYLPVGFLVAVLIAIEMIIVLGSKNFGLDQFTA 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 SR +N + +G +LYT Y YP E++ ILL++++ AI L LR RR K QD ++Q Sbjct: 121 PASRGA-DYSNTKELGNLLYTVYVYPFELASVILLVAIVAAIALALR-RRPSKAQDPAQQ 178 Query: 180 LESNPDNSIVMVKVKSGKG 198 + P + + +VK+ + K Sbjct: 179 VRVRPQDRVRLVKMAAEKS 197 >gi|217331580|gb|ACK38306.1| NADH dehydrogenase subunit 6 [Isoetes engelmannii] gi|314908352|gb|ADT62123.1| NADH dehydrogenase subunit 6 [Isoetes engelmannii] Length = 208 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/196 (39%), Positives = 112/196 (57%), Gaps = 10/196 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +FS +A++S +V+ +NP++SV LI F + +GL L LG +F +MI LVVYVGA Sbjct: 2 ILFSVFSSIALVSGVMVMRAKNPVHSVLFLILVFCHTSGLLLWLGLDFFSMILLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASN--FMVFSAE-GEL 121 + V FLF++MML+I I E+ E + +G IL E+ + N + S L Sbjct: 62 IAVLFLFVVMMLNIKIAEIHEDVLRYLPVGGIIGFILGWEMFLIVDNDYIPILSTNMNTL 121 Query: 122 SRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQD 175 S V G N+E IG +LYT Y +S ILL++MIGAIV+ + HR +KRQ+ Sbjct: 122 SYTVCAGKIQSWTNLETIGNLLYTIYLVWFLVSSLILLVAMIGAIVITMEHRTTRVKRQN 181 Query: 176 ISKQLESNPDNSIVMV 191 S E + +S V V Sbjct: 182 WSFLEEPSKRSSQVRV 197 >gi|54295609|ref|YP_128024.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str. Lens] gi|53755441|emb|CAH16937.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str. Lens] Length = 219 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 114/210 (54%), Gaps = 20/210 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ + ++S+ +V++ NP+ V L+ F +A L++L AEF+A+I ++VYVGAV+ Sbjct: 10 FYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWILAEAEFLALILILVYVGAVM 69 Query: 68 VFFLFIIMMLDIDIEVAEPR--KKRGF---LGSFFIGILAAEL---------------IV 107 FLF++MML+IDIE + K F + + F G+L + + Sbjct: 70 TLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALFTGLLMVAIPKDLFKNSVQTQEKPLS 129 Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 S M S E L +N E +G VLYT Y EI+ ILL++++ AI L+ R Sbjct: 130 VNSQLMDLSTEDGLVTPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLVHRG 189 Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQDI++Q+ + + ++ +KS K Sbjct: 190 AIRSKRQDITQQIMTRRAERVKLISMKSEK 219 >gi|317134245|ref|YP_004123489.1| NADH dehydrogenase subunit 6 [Halisarca sp. DVL-2010] gi|315141536|gb|ADT81740.1| NADH dehydrogenase subunit 6 [Halisarca sp. DVL-2010] Length = 191 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/188 (38%), Positives = 110/188 (58%), Gaps = 19/188 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ I S +V++ NP++SV LIFAF NA+ LF+LL EF+A I L+VYVGA+ Sbjct: 5 FYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 + FLF+IMML+ I+ +++ +G+ F+ E+++ ++ + + Sbjct: 65 ILFLFVIMMLNLTDFGYNINSDMSNYLPAGLVIGTVFL----FEILIWHNHSEGYYLSSD 120 Query: 121 L----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 V N+E IG+VLYT + Y ++ FILL++MIGAIVL DI+RQDI Sbjct: 121 CVPIYYNCVISSPNIEIIGRVLYTDFYYLFLLASFILLVAMIGAIVLTHEINIDIRRQDI 180 Query: 177 ----SKQL 180 S+QL Sbjct: 181 FIQTSRQL 188 >gi|11466641|ref|NP_066324.1| NADH dehydrogenase subunit 6 [Malawimonas jakobiformis] gi|10178679|gb|AAG13691.1|AF295546_17 NADH dehydrogenase subunit 6 [Malawimonas jakobiformis] Length = 190 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 18/194 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY +S + I+S+ +V+ V NPI+S+ LI F+N +GL +LL EF+A+ ++VY Sbjct: 1 MSEILFYFYSILTIVSAIMVIAVTNPIHSILFLILVFINVSGLLILLEVEFLAITLIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASN---------- 111 VGA+ V FL + MM +I I V+ +G I E+I+C +N Sbjct: 61 VGAIAVLFLSVTMMPNIKIVVSNLNLLHYIPIGGIITIIFLLEMIICFNNDFISIFNLNN 120 Query: 112 ---FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 F EL + N+E+IG ++YT Y ISGFILLL+M GAIVL L Sbjct: 121 INDFDFIQWTNELKHMT----NIESIGILIYTHYYDLFIISGFILLLAMNGAIVLTLHIN 176 Query: 169 RDIKRQDISKQLES 182 +IKRQ I Q+ S Sbjct: 177 NNIKRQQIFFQIYS 190 >gi|317097475|ref|YP_004123691.1| NADH dehydrogenase subunit 6 [Plakina sp. DVL-2010] gi|308912635|gb|ADO51399.1| NADH dehydrogenase subunit 6 [Plakina sp. DVL-2010] Length = 197 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 14/190 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119 + FLF+IMML++ D+E A +GS L E+ + +V+S Sbjct: 65 ILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEIFIIGREAIVYSNRDSDYENLT 124 Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++S + K +N+E +G++LYT Y Y ++ FILL++MIGAIVL ++KR Sbjct: 125 DVLGFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184 Query: 174 QDISKQLESN 183 QD+ Q N Sbjct: 185 QDLFIQTSRN 194 >gi|124286766|ref|YP_001023660.1| NADH dehydrogenase subunit 6 [Savalia savaglia] gi|110083985|gb|ABG49162.1| NADH dehydrogenase subunit 6 [Savalia savaglia] Length = 221 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 42/224 (18%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY SF AI S +V++ NP++SVF L+ AF +++ LF+LLGA+F+A++ L+VY Sbjct: 1 MTWACFYTLSFGAIASGIMVISALNPVHSVFWLVVAFTSSSALFILLGADFIALMFLIVY 60 Query: 63 VGAVIVFFLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVC 108 VGA+ + FLF+IMML++ D P + G +G+ F +A+ ++ Sbjct: 61 VGAIAILFLFVIMMLNLTDFP---PAYRLGGETDMTNYVPVGLAIGTLFFSEIASSWLIM 117 Query: 109 ASNFMV---FSA--EGELSRL----------------VFKGNNVENIGKVLYTQYAYPLE 147 + + F A G S L + K +N+E IG++LYT Y Y Sbjct: 118 GGHSALAGPFGAATSGHASALRPLELGGNWNLANPWFLIKCHNIEAIGRLLYTDYYYLFI 177 Query: 148 ISGFILLLSMIGAIVLMLRHRRDI----KRQDISKQLESNPDNS 187 ++ FILL++MIGAIVL +I K+QDI Q+ P+ + Sbjct: 178 LASFILLVAMIGAIVLTQEIGEEIGATAKKQDIFLQISRAPEGA 221 >gi|78485171|ref|YP_391096.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Thiomicrospira crunogena XCL-2] gi|78363457|gb|ABB41422.1| NADH dehydrogenase I chain J [Thiomicrospira crunogena XCL-2] Length = 211 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 117/213 (54%), Gaps = 28/213 (13%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYL + +++ S+ +V++V+NP+ + L+ F+ AG++L AEF+ ++ ++ Sbjct: 1 MTFEQFIFYLLAGISVFSALMVISVKNPVKAALWLVLTFIATAGVWLTAQAEFLGLVLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115 VYVGAV+V FLF++MMLDI++ + K GF +G+LAA I A ++V Sbjct: 61 VYVGAVMVLFLFVVMMLDINLA----QLKEGFTRYLPLGVLAATAI-FALMYLVLGPERF 115 Query: 116 ---------SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 SA GE S N ++I LYT + Y ++ +LL+ ++ AI L LR Sbjct: 116 GLEQFAAPQSAGGEYS-------NTKSIAVPLYTTHVYAFILAAVLLLVGIVAAITLTLR 168 Query: 167 HR--RDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R +++ QDI KQ+ + MVK+ + K Sbjct: 169 RRPPKEVLYQDIDKQVRVQASDRFKMVKMDAVK 201 >gi|321401341|gb|ADW83096.1| NADH dehydrogenase subunit 6 [Pavlova lutheri] Length = 212 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/198 (39%), Positives = 116/198 (58%), Gaps = 21/198 (10%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 SL +LFS A++SS +V+T NP++SVF+LIF FVN A + L+L EF++++ LVVYVG Sbjct: 6 SLIIFLFSSFALVSSAVVITATNPVHSVFALIFVFVNVASVLLVLRVEFISLLFLVVYVG 65 Query: 65 AVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAEL-IVCASNFMVFSA----E 118 AV V FLF+IMML++ + E ++ LG + E+ ++ + + FS Sbjct: 66 AVAVLFLFVIMMLNVKLNEASDNSVSYLPLGLVLGVLFLLEVSLIITGDLLPFSGGFLYR 125 Query: 119 GELSRLVFKG---------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 E+S+ +F G NN++ IG V+YT +P ++G +LLLSMIGAIVL Sbjct: 126 SEISQNLFAGSPFSHLHLESVVAVPNNMQLIGSVVYTDLFFPFILAGLLLLLSMIGAIVL 185 Query: 164 MLRHRRDIKRQDISKQLE 181 L +QDI KQ+ Sbjct: 186 SLMKTSSALKQDIFKQVS 203 >gi|10802936|gb|AAG23684.1|AF288091_29 NADH dehydrogenase subunit 6 [Thraustochytrium aureum] Length = 204 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 118/204 (57%), Gaps = 12/204 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ F +FSF +SSF V+ V P+ +V SLIF+F NAAGL + AEF+A++ L+VY Sbjct: 1 MEFFLFCVFSFGLCVSSFNVIFVNKPVNAVLSLIFSFCNAAGLLFMAEAEFIAILFLIVY 60 Query: 63 VGAVIVFFLFIIMMLDI-DIEVAEPRKKRG-----FLGSFFIGILAAELIVCASNFMVFS 116 +GA+ V FLF+I+ML++ +I E + F FFI + +L + +F Sbjct: 61 IGAIAVLFLFVIIMLNLKNIFFTEKFNESFPIILIFSLLFFIILFFNQLTFYSFEVTLFE 120 Query: 117 AEGELS--RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH----RRD 170 + +L+ N++ G+VLYT Y L I+GFILL+++I +I+L ++D Sbjct: 121 LPSHIHWIKLIDSIGNIDLFGQVLYTYYFTYLLIAGFILLVAIIASIILTSNKSFLLKKD 180 Query: 171 IKRQDISKQLESNPDNSIVMVKVK 194 K+Q I QL NP+ ++ ++K K Sbjct: 181 FKKQLIFSQLSRNPNKAVFLIKKK 204 >gi|71275681|ref|ZP_00651966.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Dixon] gi|71897775|ref|ZP_00680001.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Ann-1] gi|170729498|ref|YP_001774931.1| NADH dehydrogenase subunit J [Xylella fastidiosa M12] gi|182680814|ref|YP_001828974.1| NADH dehydrogenase subunit J [Xylella fastidiosa M23] gi|71163572|gb|EAO13289.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Dixon] gi|71732330|gb|EAO34384.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Ann-1] gi|167964291|gb|ACA11301.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xylella fastidiosa M12] gi|182630924|gb|ACB91700.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xylella fastidiosa M23] Length = 221 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 119/204 (58%), Gaps = 20/204 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS + + ++ V++VR+P+Y+V LI F + A ++LL+GAEF+ + ++VYVGAV+ Sbjct: 8 FYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVC-------ASNFMVF 115 V FLF++MMLDID R + G++ +G+L A +++V A+ F V Sbjct: 68 VLFLFVVMMLDIDTS----RLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPFPVD 123 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +A + + +N+ + L+T + +P E + IL +++I A++L LR R +K QD Sbjct: 124 NAAAQAA----DTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQD 179 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + +V + + K I Sbjct: 180 PSQQTRVKSADRLRIVSMPTEKPI 203 >gi|28198180|ref|NP_778494.1| NADH dehydrogenase subunit J [Xylella fastidiosa Temecula1] gi|28056250|gb|AAO28143.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xylella fastidiosa Temecula1] Length = 222 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 119/204 (58%), Gaps = 20/204 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS + + ++ V++VR+P+Y+V LI F + A ++LL+GAEF+ + ++VYVGAV+ Sbjct: 9 FYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 68 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVC-------ASNFMVF 115 V FLF++MMLDID R + G++ +G+L A +++V A+ F V Sbjct: 69 VLFLFVVMMLDIDTS----RLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPFPVD 124 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +A + + +N+ + L+T + +P E + IL +++I A++L LR R +K QD Sbjct: 125 NAAAQAA----DTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQD 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + +V + + K I Sbjct: 181 PSQQTRVKSADRLRIVSMPTEKPI 204 >gi|307579281|gb|ADN63250.1| NADH dehydrogenase subunit J [Xylella fastidiosa subsp. fastidiosa GB514] Length = 229 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 119/204 (58%), Gaps = 20/204 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS + + ++ V++VR+P+Y+V LI F + A ++LL+GAEF+ + ++VYVGAV+ Sbjct: 16 FYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 75 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVC-------ASNFMVF 115 V FLF++MMLDID R + G++ +G+L A +++V A+ F V Sbjct: 76 VLFLFVVMMLDIDTS----RLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPFPVD 131 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +A + + +N+ + L+T + +P E + IL +++I A++L LR R +K QD Sbjct: 132 NAAAQAA----DTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQD 187 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + +V + + K I Sbjct: 188 PSQQTRVKSADRLRIVSMPTEKPI 211 >gi|317401997|gb|EFV82597.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54] Length = 216 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 111/178 (62%), Gaps = 7/178 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + +I++F V+T R+P+ +V LI AF NAA L++LLGAEF+A++ ++ Sbjct: 1 MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---A 117 VYVGAV+V FLF++MMLDI ++ ++G +G++ ++V F++ S Sbjct: 61 VYVGAVMVLFLFVVMMLDIRMDA----LRQGMKTYLPLGLVIGLVMVLEMAFVLGSTWYG 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN +G+ +YT Y Y +E+ +LL+ M+ AI L LR RRD+K D Sbjct: 117 AGPQAPVAGDYNNARALGEAMYTHYIYAIEVGAALLLVGMVAAIALTLRRRRDVKYND 174 >gi|317134294|ref|YP_004123149.1| NADH dehydrogenase subunit 6 [Plakina trilopha] gi|308912666|gb|ADO51428.1| NADH dehydrogenase subunit 6 [Plakina trilopha] Length = 197 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/190 (38%), Positives = 112/190 (58%), Gaps = 14/190 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-------FFIGILAAELIVCAS------NFM 113 + FLF+IMML++ D+ A +GS F I I+ E IV ++ N M Sbjct: 65 ILFLFVIMMLNLTDLGGAGDMSNYIPIGSVMGVFLLFEIFIMGREAIVYSNRDTDYENLM 124 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++S + K +N+E +G++LYT Y Y ++ FILL++MIGAIVL ++KR Sbjct: 125 DVLDFWDVSIEIIKFSNIEALGRILYTNYFYLFILASFILLVAMIGAIVLTHELGIELKR 184 Query: 174 QDISKQLESN 183 QD+ Q N Sbjct: 185 QDLFIQTSRN 194 >gi|71897863|ref|ZP_00680089.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Ann-1] gi|71732418|gb|EAO34472.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Ann-1] Length = 221 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 117/204 (57%), Gaps = 20/204 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS +A+ ++ V++VR+P+Y+V LI F + A ++LL+GAEF+ + ++VYVGAV+ Sbjct: 8 FYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA------------SNFMVF 115 V FLF++MMLDID R + G++ +G+L A +++ + F V Sbjct: 68 VLFLFVVMMLDIDTS----RLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMVTPFPVD 123 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +A + + +N+ + L+T + +P E + IL +++I A++L LR R +K QD Sbjct: 124 NAAAQAA----DTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQD 179 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 +Q + + +V + + K I Sbjct: 180 PGQQTRVKSADRLRIVSMPTEKPI 203 >gi|301353210|ref|YP_003795207.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae] gi|301353240|ref|YP_003795237.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae] gi|290573158|gb|ADD46345.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae] gi|290573188|gb|ADD46375.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae] Length = 197 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/199 (38%), Positives = 117/199 (58%), Gaps = 13/199 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++FF LF+ + +IS +VV+V N IYSV LIF+F N L LLLG +F+++I L++Y Sbjct: 1 MSNIFFNLFASLLLISLIMVVSVNNAIYSVLFLIFSFFNVMCLLLLLGVDFISLIFLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAEG 119 +GA+ V FLF+IMM+ + E F+ F +L I N FMVF E Sbjct: 61 LGAITVLFLFVIMMIQLK---TEDFGNFKFIPVFCFVVLFIFFIDIFKNNDVFMVFLNEN 117 Query: 120 -ELSRL-----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 L+ + + +N+ IG++ YT +A ISG ILL++MIGAI+L L+ + +++ Sbjct: 118 SNLNYMNWFLKIINIDNIRMIGQIAYTYFAVYFIISGIILLIAMIGAILLSLKKNQYVRK 177 Query: 174 -QDISKQLESNPDNSIVMV 191 Q+ S+QL +N+I V Sbjct: 178 WQNTSQQLSRCVENAIFFV 196 >gi|226939465|ref|YP_002794538.1| NuoJ [Laribacter hongkongensis HLHK9] gi|226714391|gb|ACO73529.1| NuoJ [Laribacter hongkongensis HLHK9] Length = 211 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 123/203 (60%), Gaps = 10/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY S + + + V+T +NP+++V L+ AF +AG +LL+ AEF+A+ ++ Sbjct: 1 MSFQLILFYALSVLLVYAGLRVITAKNPVHAVLHLVLAFFVSAGHWLLIEAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF-FIGILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLDI+ E + + GF F G++A LI + + A G Sbjct: 61 VYVGAVMVLFLFVVMMLDINFE----KLREGFWKHLPFAGLVAVVLIAELAYVLTSPAAG 116 Query: 120 -----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + L +NV+++G+ +YT Y YP E++ +LLL+++ AI L R+R+D K Sbjct: 117 LSDMPSPAALAADYSNVKDLGRQIYTVYLYPFELAAVLLLLAIVAAIALTQRNRKDTKWV 176 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 D + Q+ + ++ + +VK+++ K Sbjct: 177 DPAVQVMARREDRVRIVKMQAVK 199 >gi|332526756|ref|ZP_08402858.1| NADH-ubiquinone oxidoreductase, subunit J [Rubrivivax benzoatilyticus JA2] gi|332111159|gb|EGJ11191.1| NADH-ubiquinone oxidoreductase, subunit J [Rubrivivax benzoatilyticus JA2] Length = 210 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 118/203 (58%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYLFS + + ++ V+T R+ ++ V L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MNTTTALFYLFSAVLLFAALRVITARSTVHGVLYLVLAFFNAACIWMLLQAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115 VYVGAV+V FLF++MMLDI+ E + GF F + + +I + ++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINSESV----RTGFWKHFPLAGMVGAVIALEMSLVLLRGFQP 116 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + EL+ + N +G LYT Y YPL+++ +LL++++ AI L LRHR+D +R D Sbjct: 117 AQAPELTAQALEMGNTRLLGIELYTHYLYPLQLAAVLLLVAIVAAIALTLRHRKDSRRVD 176 Query: 176 ISKQLESNPDNSIVMVKVKSGKG 198 + + + + +VKV + K Sbjct: 177 PAMAVRVKRADRVRLVKVPTVKA 199 >gi|164420992|ref|YP_001648613.1| NADH dehydrogenase subunit 6 [Halisarca dujardini] gi|158668146|gb|ABW76605.1| NADH dehydrogenase subunit 6 [Halisarca dujardini] Length = 196 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/196 (38%), Positives = 104/196 (53%), Gaps = 24/196 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ I S +V++ NP++SV LIFAF NA+ LF+LL EF+A I L+VYVGA+ Sbjct: 5 FYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDIDIEV-------AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 + FLF+IMML++ A IGI+ I+ N +EG Sbjct: 65 ILFLFVIMMLNLTPNTGGEFGPNANSDMSNYLPAGLVIGIVFLFEILIWHN----HSEGY 120 Query: 121 ---------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 V N+E IG+VLYT + Y ++ FILL++MIGAIVL +I Sbjct: 121 YLSSGCVPVYYNCVISSPNIEIIGRVLYTDFYYLFLLASFILLVAMIGAIVLTHDINTEI 180 Query: 172 KRQDI----SKQLESN 183 + QDI S+QL + Sbjct: 181 RXQDIFIQTSRQLWAT 196 >gi|164421155|ref|YP_001648557.1| NADH dehydrogenase subunit 6 [Chondrilla aff. nucula CHOND] gi|158668116|gb|ABW76577.1| NADH dehydrogenase subunit 6 [Chondrilla aff. nucula CHOND] Length = 191 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/188 (39%), Positives = 105/188 (55%), Gaps = 19/188 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ I S +V++ NP++SV LIFAF NA+ LF+LL EF+A I L+VYVGA+ Sbjct: 5 FYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEGE----- 120 + FLF+IMML++ D +L IGI+ I+ N +EG Sbjct: 65 ILFLFVIMMLNLTDFGYNINSDMSNYLPAGLIIGIVFLFEILIWHN----HSEGYYLSSD 120 Query: 121 ----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 V N+E IG+VLYT + Y ++ FIL ++MIGAIVL +I+RQD+ Sbjct: 121 CVPIYYNCVIPSPNIEIIGRVLYTDFYYLFLLASFILXVAMIGAIVLTHEINIEIRRQDL 180 Query: 177 ----SKQL 180 S+QL Sbjct: 181 FIQTSRQL 188 >gi|289207902|ref|YP_003459968.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thioalkalivibrio sp. K90mix] gi|288943533|gb|ADC71232.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thioalkalivibrio sp. K90mix] Length = 217 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 116/202 (57%), Gaps = 12/202 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FYLF + + + +++VRNP+++ L+ FV AA ++LL AEF+ ++ ++ Sbjct: 1 MTFELILFYLFGAILLGGALAMISVRNPVHAALFLVLCFVAAAAVWLLAEAEFLGIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-----LAAELIVCASNFMVF 115 VYVGAV+V FLF++MMLDI++ + + GF +GI +A L+ + ++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINLA----KLREGFTEYLPVGIVVAVAMATVLVAVITRYITM 116 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 R + N E +G +LYT+Y YP EI+ ILL+++I AI L +R R D K D Sbjct: 117 DVP---ERAGPEYANTEALGAILYTEYVYPFEIAAVILLVAIIAAISLTMRKRPDNKSID 173 Query: 176 ISKQLESNPDNSIVMVKVKSGK 197 +Q+ + + + MV + S K Sbjct: 174 PGQQMAVSREGRVRMVSMASEK 195 >gi|329909996|ref|ZP_08275181.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium IMCC9480] gi|327546333|gb|EGF31352.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium IMCC9480] Length = 221 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 125/200 (62%), Gaps = 10/200 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY FS + ++++ V+T RNP++S L+ +F +AA ++LLL AEF+A++ ++ Sbjct: 1 MEFKTALFYAFSAILVMAALKVITDRNPVHSALFLVLSFFSAAAIWLLLQAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG----SFFIGILAAELIVCASNFMVFS 116 VYVGAV+V FLF++MMLDI+++ + + GF G + FIG+L L + A F Sbjct: 61 VYVGAVMVLFLFVVMMLDINVD----KMREGFWGYLPFAAFIGVLIV-LEMSAVLLQAFW 115 Query: 117 A-EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 A + ++ + +GK++YT+Y + EI+ ILLL+++ A+ L LR R+D K D Sbjct: 116 APDAQVPSAASTIGTTKELGKLIYTEYVFAFEIAAAILLLAIVAAVALTLRKRKDSKYFD 175 Query: 176 ISKQLESNPDNSIVMVKVKS 195 ++ ++ + + +VK+KS Sbjct: 176 PAEAVKVKASDRVRIVKMKS 195 >gi|194366595|ref|YP_002029205.1| NADH dehydrogenase subunit J [Stenotrophomonas maltophilia R551-3] gi|194349399|gb|ACF52522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Stenotrophomonas maltophilia R551-3] Length = 218 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 113/195 (57%), Gaps = 16/195 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++F+ A +S+ V++VRNP+++V L+ F + A ++LL+GAEF+ + ++VYVGAV+ Sbjct: 8 FWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVLVYVGAVM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR-GFLGSFFIGILAAELIVCASNFMVFSAEGE------ 120 V FLF++MMLDID P K R G++ +G++ A + + ++ +G Sbjct: 68 VLFLFVVMMLDID-----PTKLREGWVRYLPVGLIVA-VAMLVQMLILIGVKGRAVTPFP 121 Query: 121 ---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + L +NV + + L+T+Y P E + IL ++++ A++L LR R +K Q+ Sbjct: 122 ADNAAALAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNPG 181 Query: 178 KQLESNPDNSIVMVK 192 +Q D + MVK Sbjct: 182 EQTMVKADQRLRMVK 196 >gi|56416877|ref|YP_153951.1| NADH dehydrogenase chain J [Anaplasma marginale str. St. Maries] gi|222475242|ref|YP_002563658.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str. Florida] gi|254995065|ref|ZP_05277255.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str. Mississippi] gi|255003226|ref|ZP_05278190.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str. Puerto Rico] gi|255004354|ref|ZP_05279155.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str. Virginia] gi|56388109|gb|AAV86696.1| NADH dehydrogenase chain J [Anaplasma marginale str. St. Maries] gi|222419379|gb|ACM49402.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str. Florida] Length = 200 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 111/184 (60%), Gaps = 11/184 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S F+ F+ +A++S+ VV + NP+YSV SLI F ++ +F++LGAE VAM+ ++VY Sbjct: 1 MLSFLFFCFAGVAVLSAVGVVLLPNPVYSVLSLILTFFVSSAVFIMLGAELVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V FLF++MMLDI + + G + + +G+ L + VF A+ Sbjct: 61 VGAVAVLFLFVVMMLDI----SRVGSRHGLVKHYPLGVACMFLFFGCMVYSVFHAKSSAV 116 Query: 123 RLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRRDIKRQDI 176 G +NV IG LYT+YAY +++G +LL++ +G+++L++ R +K QD+ Sbjct: 117 DGSGSGFGSVDNVFLIGLQLYTEYAYAFQLAGVLLLIAGVGSLILIVGGSSGRSLK-QDV 175 Query: 177 SKQL 180 +Q+ Sbjct: 176 GQQV 179 >gi|317097375|ref|YP_004123584.1| NADH dehydrogenase subunit 6 [Plakina monolopha] gi|308912589|gb|ADO51356.1| NADH dehydrogenase subunit 6 [Plakina monolopha] Length = 197 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 14/190 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGS-------FFIGILAAELIVCAS------NFM 113 + FLF+IMML++ D+E A +GS F I I+ E IV + N Sbjct: 65 ILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEIFIIGREAIVYNNRDSDYENLT 124 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++S + K N+E +G +LYT Y Y ++ FILL++MIGAIVL ++KR Sbjct: 125 DVLGFWDVSIEIIKFYNIEVLGXILYTDYFYSFILASFILLVAMIGAIVLTQELGIELKR 184 Query: 174 QDISKQLESN 183 QD+ Q N Sbjct: 185 QDLFIQTSRN 194 >gi|325267329|ref|ZP_08133991.1| NADH-quinone oxidoreductase subunit J [Kingella denitrificans ATCC 33394] gi|324981266|gb|EGC16916.1| NADH-quinone oxidoreductase subunit J [Kingella denitrificans ATCC 33394] Length = 217 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 118/198 (59%), Gaps = 3/198 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FYLF+ + + + VT +NP+++ L+ F +A ++LL+ AEF+ + +V Sbjct: 1 MTFQLILFYLFAAVILYGALQTVTAKNPVHAALHLVLTFCASAMMWLLMQAEFLGITLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFSAE 118 VYVGAV+V FLF++MML+ID+E R + +G+L A L++ + + Sbjct: 61 VYVGAVMVLFLFVVMMLNIDVEEMRQGFWRHAPAALVVGVLMAALLIAIFLAPDTALNQF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + +NV ++GK +YT Y P E++ +L+L M+ AI L+ R + KRQD ++ Sbjct: 121 GLMKDIPADYSNVRDLGKQIYTAYLLPFELAAVLLVLGMVAAIALVHRKTNNPKRQDPAE 180 Query: 179 QLESNPD-NSIVMVKVKS 195 Q++ + D N + +VK++S Sbjct: 181 QVKVSADKNRMRLVKMES 198 >gi|164420948|ref|YP_001648461.1| NADH dehydrogenase subunit 6 [Amphimedon compressa] gi|158668072|gb|ABW76536.1| NADH dehydrogenase subunit 6 [Amphimedon compressa] Length = 184 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 102/179 (56%), Gaps = 8/179 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ A IS +V++ + ++SV LI F++A+ LF+LL EF+A I L+VYVGA+ Sbjct: 5 FYLFALGATISGIMVISAFSSVHSVLWLIMVFISASALFILLEVEFIAFIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + FLF+IMML++ IGI+ + A +F + G LV K Sbjct: 65 ILFLFVIMMLNLTGPGMGDDMSNYLPAGLIIGIV---FLFEALSFRSTTLGGNWPLLVEK 121 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR---QDISKQLESN 183 N+E +G+VLYT Y Y I+ FILL++MIGAIV L H I++ QDI Q+ Sbjct: 122 APNIEVLGRVLYTDYYYLFIIASFILLVAMIGAIV--LTHDEGIEKRKGQDIYIQISRQ 178 >gi|317097078|ref|YP_004123217.1| NADH dehydrogenase subunit 6 [Plakortis halichondrioides] gi|308912711|gb|ADO51470.1| NADH dehydrogenase subunit 6 [Plakortis halichondrioides] Length = 197 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 14/190 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-------- 118 + LF+IMML++ D+E +GS L E+ + +V+S Sbjct: 65 IXXLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNGDTNYGXLM 124 Query: 119 -----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++S + K +N+E +G+VLYT Y Y ++ FILL++MIGAIV ++KR Sbjct: 125 DVLDFSDVSLEIIKFSNIEALGRVLYTDYFYSFLLASFILLVAMIGAIVXTHELGIELKR 184 Query: 174 QDISKQLESN 183 QD+ Q N Sbjct: 185 QDLFIQTSRN 194 >gi|23464626|ref|NP_696994.1| NADH dehydrogenase subunit 6 [Monosiga brevicollis ATCC 50154] gi|23344088|gb|AAN28364.1| NADH dehydrogenase subunit 6 [Monosiga brevicollis] Length = 228 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 30/203 (14%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+FS A S LV++ +NPI SV L+ F N++ L L+LG EF+A++ L+VYVGA+ + Sbjct: 7 YIFSIGAFFSGILVISSKNPINSVLGLVMCFANSSILLLMLGFEFLALLFLIVYVGALAI 66 Query: 69 FFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 FLF++MML+I +E+ E + +G I EL+V S+ ++L F Sbjct: 67 LFLFVVMMLNIRLVELIENFTRYLPIGGIIGIIFILELMVIVDEQFAMSSNNLFTQLFFI 126 Query: 128 GN---------------------------NVENIGKVLYTQ-YAYPLEISGFILLLSMIG 159 N N+E+IG++LYT Y Y + +S +LL++M+G Sbjct: 127 NNPYELSLFMNSYSVDITSNYNNNIVNLTNIESIGQILYTHGYIYFI-VSSIVLLIAMVG 185 Query: 160 AIVLMLRHRRDIKRQDISKQLES 182 AIVL L H + +KRQDI Q+ + Sbjct: 186 AIVLTLYHEQGVKRQDIFSQIST 208 >gi|284106854|ref|ZP_06386297.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Poribacteria sp. WGA-A3] gi|283830033|gb|EFC34309.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Poribacteria sp. WGA-A3] Length = 170 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F F+ + ++++ LVV +RNPIYS SL+ F + AGL++ L AEF+A I ++VY Sbjct: 1 MATFVFLYFAAVILVAASLVVVLRNPIYSALSLLVMFFHVAGLYVTLHAEFLAAIQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGE 120 GA++V +LF++M+L++ E E ++G + F +L E L+ + F V + + Sbjct: 61 AGAILVLYLFVVMLLNVKRE--ERFNQQGTVALFLGLVLLTEAVLLAVSRGFNVATPDPG 118 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 N E+IG+VLY+ Y +P EI+ ILL++MIGA++L Sbjct: 119 PEGAAKAVGNTESIGEVLYSTYLFPFEIASLILLVAMIGAVIL 161 >gi|6137794|ref|NP_009264.1| NADH dehydrogenase subunit 6 [Metridium senile] gi|3914175|sp|O47498|NU6M_METSE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|913914|gb|AAB32500.1| NADH dehydrogenase complex subunit 6 [Metridium senile] gi|2920996|gb|AAC04641.1| NADH dehydrogenase subunit 6 [Metridium senile] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 115/198 (58%), Gaps = 23/198 (11%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +++F+ SF + S +V++ NP++SVF L+ AF+++A LF+LLG +F+A++ +++Y Sbjct: 1 MVTMYFFTLSFGTVASGIMVISALNPVHSVFWLVVAFISSAALFILLGVDFIALMFIIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG-------------FLGSFFIGILAAELIVCA 109 VGA+ + FLF+IMML ++ P +RG +G+ F +A+ ++ Sbjct: 61 VGAIAILFLFVIMML--NLTDFTPAFRRGGEADMTNYVPIGLAVGTLFFEAIASSWLIMG 118 Query: 110 SNFMVFSAEG--ELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 ++ G +L+ F K +N+E IG++LYT Y + FILL++M+GAIVL Sbjct: 119 GPYVYRGLLGAWDLANPWFLKKYHNIEAIGRILYTDCYYLFILVSFILLVAMLGAIVLTQ 178 Query: 166 RHRRDI----KRQDISKQ 179 +I K+QDI Q Sbjct: 179 EIGTEIGPTAKKQDIFVQ 196 >gi|167627162|ref|YP_001677662.1| NADH dehydrogenase I subunit J [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667724|ref|ZP_04755302.1| NADH dehydrogenase I, J subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876268|ref|ZP_05248978.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597163|gb|ABZ87161.1| NADH dehydrogenase I, J subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842289|gb|EET20703.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 201 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 20/206 (9%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ + FY+F+ +AIIS+ ++V NP+ SV ++IF FV A ++++ ++A++ +V Sbjct: 1 MVVTDILFYIFASLAIISALVLVLANNPVNSVIAMIFTFVFTAAVWIIFQQVYLALLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++ MLD+ +E K+G +G FF A +IVCA V S Sbjct: 61 VYVGAVLVMFLFVVFMLDLHVE------KQGRVGRFFYAF--AAIIVCAIFATVISYA-- 110 Query: 121 LSRLVFKGNNVEN-------IGKVLYTQYA-YPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + VF G++++ IG ++ Y E+ FILL +M AI L LR +R Sbjct: 111 -ATKVFAGDSMQGGVGGLKIIGLTMFDNSNLYVFELVDFILLAAMTAAITLTLRSKRKGN 169 Query: 173 RQ-DISKQLESNPDNSIVMVKVKSGK 197 + + ++Q++ + + MVK+ S + Sbjct: 170 KSVNPAQQVKVRAKDRLTMVKIPSNR 195 >gi|285017801|ref|YP_003375512.1| NADH-quinone oxidoreductase chain j (nadh dehydrogenaseI chain j) (ndh-1, chain j) oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283473019|emb|CBA15524.1| probable nadh-quinone oxidoreductase chain j (nadh dehydrogenaseI chain j) (ndh-1, chain j) oxidoreductase protein [Xanthomonas albilineans] Length = 216 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 12/198 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++F+ +A +++ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVGAV+ Sbjct: 8 FWIFATIAAVAAGAVISVRNPVYAVLCLILTFFSIACVWLLVGAEFLGVTLVLVYVGAVM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFSAEG 119 V FLF++MMLDID R + G++ +G+ A LI + + Sbjct: 68 VLFLFVVMMLDID----SVRLREGWVRYLPVGLAVALAMLVQMVTLIGVKARTVAPFPAD 123 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +N+ + K L+TQ+ P E + IL ++++ A++L LR R IK Q+ +Q Sbjct: 124 NAAAQAADTSNIAWLAKTLFTQFLLPFEFAAIILTVAVVAAVMLTLRKRTGIKTQNPGEQ 183 Query: 180 LESNPDNSIVMVKVKSGK 197 + + MVK+ + K Sbjct: 184 SRVKAGDRLRMVKMDAEK 201 >gi|262186704|ref|YP_003275963.1| NADH dehydrogenase subunit 6 [Pleurozia purpurea] gi|237780701|gb|ACR19347.1| NADH dehydrogenase subunit 6 [Pleurozia purpurea] Length = 199 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 23/204 (11%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+F +A++S +V+ +NP++SV LI F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFYVFVVLALVSGAMVIRAKNPVHSVLFLISVFRNTSGLLVLLGPDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFF------------IGILAAELIVC 108 + V F F++MML IE R G +G F I IL+ + Sbjct: 62 IAVSFSFVVMMLHTRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILSTK---S 118 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + ++ ++ E + N E +G +LYT Y + +S I L+++IGAIVL + Sbjct: 119 GATYLTYTVYAE---KIHSWTNSETLGNLLYTTYFFLFLVSSLISLVALIGAIVLTMHKT 175 Query: 169 RDIKRQDISKQLESNPDNSIVMVK 192 +KRQD+ Q + N+I V+ Sbjct: 176 TRVKRQDVFIQNAIDFRNTIRKVR 199 >gi|88608358|ref|YP_505913.1| NADH dehydrogenase I, J subunit [Neorickettsia sennetsu str. Miyayama] gi|88600527|gb|ABD45995.1| NADH dehydrogenase I, J subunit [Neorickettsia sennetsu str. Miyayama] Length = 189 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 114/187 (60%), Gaps = 12/187 (6%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +AI SSF VV+ RN +++V L+ AF ++ L L+ G E ++++ LVVYVGA+ + FLF+ Sbjct: 11 VAIFSSFRVVSCRNVVHAVLYLVLAFFTSSVLLLVSGLEVLSLMLLVVYVGAIAILFLFV 70 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR-LVFKGNNVE 132 +MML+ D + K G + ++G+L L+ F+V S+ + + + G ++ Sbjct: 71 VMMLNSD----DFEKGIGMSVAKYVGLLFMALL---PFFLVLSSYDDTQQERAYIG--IK 121 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 +IG VLYT Y Y +SG +LLL+M+ AI + L +RD K Q + +Q+ + + + ++ Sbjct: 122 DIGAVLYTDYVYLFHLSGVVLLLAMVAAISIALPSKRDTKCQVVKEQISRS--SVVRLLN 179 Query: 193 VKSGKGI 199 V SGKG+ Sbjct: 180 VPSGKGV 186 >gi|325921402|ref|ZP_08183259.1| NADH dehydrogenase subunit J [Xanthomonas gardneri ATCC 19865] gi|325548160|gb|EGD19157.1| NADH dehydrogenase subunit J [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 12/200 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVGAV+ Sbjct: 16 FYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 75 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFSAEG 119 V FLF++MMLDID R + G++ +G++ A LI + Sbjct: 76 VLFLFVVMMLDIDTS----RLREGWVKYMPVGVIVAVAMFAQMVTLIGVKARSATPFPAD 131 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Q Sbjct: 132 NAAAQAADVSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNAGDQ 191 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + + MVK+ K + Sbjct: 192 SRVKAGDRLRMVKMAVEKPV 211 >gi|190575269|ref|YP_001973114.1| NADH dehydrogenase subunit J [Stenotrophomonas maltophilia K279a] gi|190013191|emb|CAQ46824.1| putative NADH-ubiquinone oxidoreductase, chain J [Stenotrophomonas maltophilia K279a] Length = 218 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 112/195 (57%), Gaps = 16/195 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++F+ A +S+ V++VRNP+++V L+ F + A ++LL+GAEF+ + ++VYVGAV+ Sbjct: 8 FWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVLVYVGAVM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR-GFLGSFFIGILAAELIVCASNFMVFSAEGE------ 120 V FLF++MMLDID P K R G++ +G++ A + + ++ +G Sbjct: 68 VLFLFVVMMLDID-----PTKMREGWVRYLPVGLIVA-VAMLVQMLILIGVKGRAVTPFP 121 Query: 121 ---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +NV + + L+T+Y P E + IL ++++ A++L LR R +K Q+ Sbjct: 122 ADNAAAVAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNPG 181 Query: 178 KQLESNPDNSIVMVK 192 +Q + MVK Sbjct: 182 EQTMVKAGQRLRMVK 196 >gi|332285008|ref|YP_004416919.1| NADH-ubiquinone oxidoreductase, chain J [Pusillimonas sp. T7-7] gi|330428961|gb|AEC20295.1| NADH-ubiquinone oxidoreductase, chain J [Pusillimonas sp. T7-7] Length = 212 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 116/197 (58%), Gaps = 5/197 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ FY+ + + ++++F V+T +P+ V LI F A+ +++L GAEF++++ ++ Sbjct: 1 MIFSTILFYVLALVLVVAAFRVITANSPVTGVLHLILTFFTASMIWMLQGAEFLSLLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELI-VCASNFMVFSAE 118 VYVGAV+V FLF++MMLD+ ++ K IG I+ E+ V A +++ Sbjct: 61 VYVGAVMVLFLFVVMMLDVRMDALRAGMKTYLPMGLIIGLIMVLEMAFVLAKSWL---GA 117 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + +N +G +YT Y + ++I G ILL+ MI AI L LR R D+KR + S+ Sbjct: 118 GPAAVIADDVDNTHALGVAMYTDYVFAVQIGGVILLVGMIAAIALTLRKRADVKRTNPSE 177 Query: 179 QLESNPDNSIVMVKVKS 195 Q++ + + MV + S Sbjct: 178 QVKVKAQDRLRMVSIPS 194 >gi|166712605|ref|ZP_02243812.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzicola BLS256] Length = 219 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 5 TLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 64 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116 AV+V FLF++MMLDID R + G++ +G++ A LI + Sbjct: 65 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q N + MVK+ K + Sbjct: 181 GEQSRVKAGNRLRMVKMAVEKPV 203 >gi|46202538|ref|ZP_00208558.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Magnetospirillum magnetotacticum MS-1] Length = 159 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 103/166 (62%), Gaps = 18/166 (10%) Query: 45 LFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFL-----GSFFI 98 +FLLLGAEF+AM+ ++VYVGAV V FLF++MMLDI+ +E+ K GFL G+ Sbjct: 1 MFLLLGAEFLAMVLVIVYVGAVAVLFLFVVMMLDINMVEL-----KEGFLQYLPTGALIA 55 Query: 99 GILAAELIVCASNFMVFSAEGEL-----SRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 +L EL+ + F+ + E + + + +N +GK++YT Y Y + SG +L Sbjct: 56 VVLLVELLAMFGGW-AFAPDVEAMIKAPTPTLDQASNTVALGKLIYTNYVYLFQASGLVL 114 Query: 154 LLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 L++MIG I+L R R +++Q I+ Q+ + D S+ + KV+SG+GI Sbjct: 115 LVAMIGTILLTHRKRTGVRKQIIADQVGRSRD-SVELKKVQSGRGI 159 >gi|317134163|ref|YP_004123416.1| NADH dehydrogenase subunit 6 [Corticium candelabrum] gi|308912772|gb|ADO51527.1| NADH dehydrogenase subunit 6 [Corticium candelabrum] Length = 197 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 105/186 (56%), Gaps = 14/186 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY ++S +V++ NPI+SVF LI F A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAIVLAVLVSGIMVISALNPIHSVFWLIAVFGGASALFILLNIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG------- 119 + FLF+IMML++ D+E A +GS L E+ + +V+S Sbjct: 65 ILFLFVIMMLNLTDLESAGDMSNYIPIGSVMGVFLLFEIFIVGREAIVYSNRDTDYENLI 124 Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++S + +N+E +G++LY Y Y ++ FILL++MIGAIVL ++KR Sbjct: 125 DVLDFWDVSIEIINFSNIEALGRILYIDYFYSFLLASFILLVAMIGAIVLTHELGIELKR 184 Query: 174 QDISKQ 179 QD+ Q Sbjct: 185 QDLFIQ 190 >gi|323398669|ref|YP_004222744.1| NADH dehydrogenase subunit 6 [Glaucocystis nostochinearum] gi|321401362|gb|ADW83116.1| NADH dehydrogenase subunit 6 [Glaucocystis nostochinearum] Length = 249 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 30/220 (13%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ FF LFSF+A+ SS + +T +NPI+SVF LI F N GL +LL AEF+AM+ LVVY Sbjct: 30 IEYTFFILFSFLALFSSIIAITSKNPIHSVFYLILVFFNVTGLLILLNAEFLAMLILVVY 89 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNF--------- 112 +GA+ V FLF++MML+I I + + K F F +L E+ + N Sbjct: 90 LGAIAVLFLFVVMMLNIKYITLKQITYKNFFFEFFIFLLLFLEVFLLTENNVLPNIINFF 149 Query: 113 -MVFSAEGE-----LSRLVFK----GNNVENIGKVLYTQ----------YAYPLEISGFI 152 M F E ++ L FK ++ + LYT Y Y ++GFI Sbjct: 150 DMKFLTNIEKYLDVINNLYFKYYKTSLDLGSFDNSLYTNAHLFGVIYISYLYYFFMAGFI 209 Query: 153 LLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 LL++MIGAIVL L R ++++Q I Q+ + ++V+ K Sbjct: 210 LLIAMIGAIVLTLHRRPNVRKQQIIDQITRDFKAAVVLRK 249 >gi|254521117|ref|ZP_05133172.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Stenotrophomonas sp. SKA14] gi|219718708|gb|EED37233.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Stenotrophomonas sp. SKA14] Length = 218 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 113/195 (57%), Gaps = 16/195 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++F+ A +S+ V++VRNP+++V L+ F + A ++LL+GAEF+ + ++VYVGAV+ Sbjct: 8 FWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVLVYVGAVM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR-GFLGSFFIGILAAELI---------VCASNFMVFSA 117 V FLF++MMLDID P K R G++ +G++ A + V A + F A Sbjct: 68 VLFLFVVMMLDID-----PTKLREGWVRYLPVGLIVAVAMLVQMLVLIGVKARSVTPFPA 122 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + +NV + + L+T+Y P E + IL ++++ A++L LR R +K Q+ Sbjct: 123 D-NAAAVAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNPG 181 Query: 178 KQLESNPDNSIVMVK 192 +Q + MVK Sbjct: 182 EQTMVKAGQRLRMVK 196 >gi|313768549|ref|YP_004062223.1| NADH dehydrogenase subunit 6 [Plocamiocolax pulvinata] gi|312844676|gb|ADR03239.1| NADH dehydrogenase subunit 6 [Plocamiocolax pulvinata] Length = 200 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 109/185 (58%), Gaps = 5/185 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++FS +IS+ +V+ N ++SV LI F N A L L LGAEF++ + ++VYVGA+ V Sbjct: 9 FIFSSFVLISALMVIYSSNAVHSVLFLILVFFNMAILLLFLGAEFISFLLIIVYVGAIAV 68 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 FLF++MML+ I +K + LG I++++ S +V + + L F Sbjct: 69 LFLFVVMMLNTKISSKNMDQKSIWPLGIIIFFIISSQFYNINSQNLVLVFDNNILVLWFN 128 Query: 128 G----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 NN++ IGK+ YT Y++ +S F+LL++MIGAI L L H+ +IK+Q I+ QL N Sbjct: 129 ESFFFNNIQVIGKLFYTYYSFLFFLSSFLLLIAMIGAITLTLHHKTNIKKQQINTQLIRN 188 Query: 184 PDNSI 188 SI Sbjct: 189 YKGSI 193 >gi|302035983|ref|YP_003796305.1| NADH-quinone oxidoreductase membrane subunit J [Candidatus Nitrospira defluvii] gi|300604047|emb|CBK40379.1| NADH-quinone oxidoreductase, membrane subunit J [Candidatus Nitrospira defluvii] Length = 206 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 7/172 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +FF+ F+ + +S LVV +RNP+YS SL+ F + AGL++ L AEF+A + +VVY Sbjct: 38 MDHIFFFYFAAVIAATSLLVVALRNPVYSALSLLIMFFHVAGLYVTLHAEFLAAVQIVVY 97 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGEL 121 GA++V +LF++M+L I +E R + +G+ L E+I+ +A Sbjct: 98 AGAILVLYLFVVMLLSIK---SEERYHSQLPVAGLLGVMLCTEVILLFIQSRTGAAAPAA 154 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + N E IG+ LY+ Y +P E++ ILL++MIGAI+L ++DI Sbjct: 155 ADPIAGPGNTEMIGEALYSTYLFPFEVASLILLVAMIGAIILA---KKDINE 203 >gi|115494865|ref|YP_778635.1| NADH dehydrogenase subunit 6 [Chrysopathes formosa] gi|82792226|gb|ABB90975.1| NADH dehydrogenase subunit 6 [Chrysopathes formosa] Length = 210 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 24/193 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +F AI S +V++ NP++S+F L+ AF ++A LF+LLG +F+A+I L++YVGA+ Sbjct: 6 FYTLAFGAIASGIMVISALNPVHSIFWLVVAFTSSAALFILLGVDFIALIFLIIYVGAIA 65 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFF-IGILAAELIVC--ASNFMVFS------- 116 + FLF+IM+L++ D A + ++ IG+ L+ AS++++ S Sbjct: 66 ILFLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLAIGTLLFSEVASSWLIMSGPYVHRG 125 Query: 117 -------AEGELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +L+ F K +N+E IG++LYT Y Y ++ FILL+++IGAIVL Sbjct: 126 SFRAEIGSSWDLANPWFLIKYHNIEAIGRILYTDYYYIFILASFILLVALIGAIVLTQEI 185 Query: 168 RRDI----KRQDI 176 ++ K+QDI Sbjct: 186 GSEVGPTAKKQDI 198 >gi|118498232|ref|YP_899282.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. novicida U112] gi|194324416|ref|ZP_03058189.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family [Francisella tularensis subsp. novicida FTE] gi|208780259|ref|ZP_03247601.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family [Francisella novicida FTG] gi|254373573|ref|ZP_04989059.1| hypothetical protein FTCG_01670 [Francisella tularensis subsp. novicida GA99-3549] gi|254375040|ref|ZP_04990520.1| hypothetical protein FTDG_01228 [Francisella novicida GA99-3548] gi|118424138|gb|ABK90528.1| NADH dehydrogenase I, J subunit [Francisella novicida U112] gi|151571297|gb|EDN36951.1| hypothetical protein FTCG_01670 [Francisella novicida GA99-3549] gi|151572758|gb|EDN38412.1| hypothetical protein FTDG_01228 [Francisella novicida GA99-3548] gi|194321481|gb|EDX18966.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family [Francisella tularensis subsp. novicida FTE] gi|208743908|gb|EDZ90210.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family [Francisella novicida FTG] gi|332678968|gb|AEE88097.1| NADH-ubiquinone oxidoreductase chain J [Francisella cf. novicida Fx1] Length = 201 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 120/203 (59%), Gaps = 14/203 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ + FY F+ +AIIS+ ++V NP+ SV ++IF F+ A ++++L ++A++ +V Sbjct: 1 MVVTDILFYTFASLAIISALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAE 118 VYVGAV+V FLF++ MLD+ +E ++G +G FF + A ++VCA + + ++A Sbjct: 61 VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYAL--AAVVVCAIFATVISYAAT 112 Query: 119 GELSRLVFKG--NNVENIGKVLYTQYA-YPLEISGFILLLSMIGAIVLMLR-HRRDIKRQ 174 + + +G ++ IG +++ Y E+ FILL +M AI L LR R+ K Sbjct: 113 NVFAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTV 172 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 + ++Q++ + + MVK+ S Sbjct: 173 NPAQQVKVRAKDRLTMVKMPSNN 195 >gi|94502583|ref|YP_588429.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays] gi|40795022|gb|AAR91066.1| NADH dehydrogenase subunit 6 [Zea mays] Length = 220 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL +LLG +F AMI LVVY+GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLILLGLDFFAMIFLVVYIGAIAVLFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM +I I EV G +G F I +L + + V++ Sbjct: 70 MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLKYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|332184787|gb|AEE27041.1| NADH-ubiquinone oxidoreductase chain J [Francisella cf. novicida 3523] Length = 201 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 120/203 (59%), Gaps = 14/203 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ ++ FY F+ +AIIS+ ++V NP+ SV ++IF F+ A ++++L ++A++ +V Sbjct: 1 MVVTNILFYTFASLAIISALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAE 118 VYVGAV+V FLF++ MLD+ +E ++G +G FF + A ++VCA + + ++A Sbjct: 61 VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYAL--AAVVVCAIFATVISYAAT 112 Query: 119 GELSRLVFKG--NNVENIGKVLYTQYA-YPLEISGFILLLSMIGAIVLMLR-HRRDIKRQ 174 + + +G ++ IG ++ Y E+ FILL +M AI L LR R+ K Sbjct: 113 NVFAGAMMQGGVGGLKIIGLTMFNNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTV 172 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 + ++Q++ + + MVK+ S Sbjct: 173 NPAQQVKVRAKDRLTMVKMPSNN 195 >gi|109156563|ref|YP_654373.1| NADH dehydrogenase subunit 6 [Nematostella sp. JVK-2006] gi|108744126|gb|ABG02347.1| NADH dehydrogenase subunit 6 [Nematostella sp. JVK-2006] Length = 199 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 112/196 (57%), Gaps = 25/196 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY SF + S +V++ NP++SVF L+ AF ++A LF+LLG +F+A++ +++YVGA+ Sbjct: 3 FYALSFGTVASGIMVISALNPVHSVFWLVVAFTSSAALFVLLGVDFIALMFVIIYVGAIA 62 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFM 113 + FLF+IMML++ D P + G +G+ F +A+ ++ ++ Sbjct: 63 ILFLFVIMMLNLADF---SPAFRLGGEADMTNYVPIGLAIGTLFFEAIASSWLIMGGPYV 119 Query: 114 VFSAEGELS----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 S+ G + + K +N+E IG++LYT Y ++ FILL++MIGAIVL Sbjct: 120 HKSSLGTWNLANPWFLTKYHNIEAIGQILYTDCYYLFILASFILLVAMIGAIVLTQEIGS 179 Query: 170 DI----KRQDISKQLE 181 ++ K+Q+I Q+ Sbjct: 180 EVGPAAKKQNIFSQIS 195 >gi|289608459|emb|CBI60588.1| unnamed protein product [Sordaria macrospora] Length = 184 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 11/151 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 +V+Q+L FYLF+ + + S+ L +T RNP++SV LI AF NAAGL +L GAEF+AM+ ++ Sbjct: 38 LVIQTLAFYLFATIVVASAALTITSRNPVHSVLWLILAFFNAAGLMVLCGAEFIAMLLVI 97 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL---GSFFIGILAAELIVCASNFMVFSA 117 VYVGAV V FLF++MMLDID + GF+ + + + + + +A Sbjct: 98 VYVGAVAVLFLFVVMMLDIDFT----ELRAGFVRYLPAGLALAVLLAVELVVGAYAWTAA 153 Query: 118 EGELSRLVFKGN----NVENIGKVLYTQYAY 144 +L++ + + N+E IG++LY++Y Y Sbjct: 154 RIDLAKRIAPTDVAVPNIEAIGRLLYSRYLY 184 >gi|110637778|ref|YP_677985.1| NADH dehydrogenase I subunit J [Cytophaga hutchinsonii ATCC 33406] gi|110280459|gb|ABG58645.1| NADH dehydrogenase subunit J [Cytophaga hutchinsonii ATCC 33406] Length = 169 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 103/179 (57%), Gaps = 22/179 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ FY+ S + + S+ V+ +NP+YSV SL+ F G LLL A+F+A++ ++VY Sbjct: 1 MGNILFYILSGITLCSALFVILSKNPVYSVLSLVITFCCITGHMLLLSADFLAVVNIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-----FMVFSA 117 GA++V FLF+IMML+++ A+P K F+ LAA C S +V+ Sbjct: 61 AGAIMVLFLFVIMMLNLNDAAAQPNKP-------FLSKLAA----CVSGGLLLISLVYLL 109 Query: 118 EG------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +G ++S+L + + +GK+L+ Q+ P EI+ + L +MIGA++L + +D Sbjct: 110 KGYQVGSIDMSKLDHNFGSAQELGKILFNQFILPFEITSVLFLSAMIGAVMLGKKDLKD 168 >gi|124515807|gb|EAY57316.1| putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum rubarum] Length = 169 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 10/166 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ F F +IS+ VV RNPIYSV SL+ F++ AGL+++L AEF+A + L+VY Sbjct: 1 MQMAMFGYFGAAIVISALFVVYFRNPIYSVMSLLTMFMHIAGLYVILEAEFLAGVQLLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR-GFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++V +LF++M+L++ +K+ +G +GI+ ++ + F EL Sbjct: 61 AGAILVLYLFVVMLLNVQSRGRFIQKQTPAVVGLGILGIVEVVALIFHTRF-----YPEL 115 Query: 122 SRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + G N E IG VLYTQY +P EI+ +LL++++GAIVL Sbjct: 116 PAIPHPGVPTLGNTETIGMVLYTQYLFPFEIASLVLLIALVGAIVL 161 >gi|206602051|gb|EDZ38533.1| Putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum sp. Group II '5-way CG'] Length = 169 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 10/166 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ F F +IS+ VV RNPIYSV SL+ F++ AGL+++L AEF+A + L+VY Sbjct: 1 MQMAMFGYFGAAIVISALFVVYFRNPIYSVMSLLTMFMHIAGLYVILEAEFLAGVQLLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++V +LF++M+L++ +K+ +G +GI+ ++ + F EL Sbjct: 61 AGAILVLYLFVVMLLNVQSRGRFIQKQTPVVVGLGILGIVEVAALIFRTRF-----YPEL 115 Query: 122 SRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + G N E IG VLYTQY +P EI+ +LL++++GAIVL Sbjct: 116 PAIPHPGVPTLGNTETIGMVLYTQYLFPFEIASLVLLIALVGAIVL 161 >gi|56791554|gb|AAW30315.1| NADH dehydrogenase subunit 6 [Amborella trichopoda] Length = 179 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 24/184 (13%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A +SS +V+ +NP++SVF I F N +GL +LLG +F A I LVVYVGA+ V FLF+ Sbjct: 1 IASVSSVMVIRAKNPVHSVFFFILVFFNTSGLLVLLGLDFFATIFLVVYVGAIAVLFLFV 60 Query: 74 IMMLDIDI-EVAEPRKKR----GFLGSFF------------IGILAAELIVCASNFMVFS 116 ++MLDI I E+ E + G +G F I IL +L ++ ++ ++ Sbjct: 61 VLMLDIKIAEIHENLLRHLPVGGIIGVLFLLEIFFLVDNDYIPILPTKL---STTYLTYT 117 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQD 175 E + N+E +G +LYT Y + ILL++MIGAIV H+ +KRQD Sbjct: 118 VYAEKIQ---SWTNLETLGNLLYTTYFVLFLVYSLILLVAMIGAIVQKTMHKTTRVKRQD 174 Query: 176 ISKQ 179 + ++ Sbjct: 175 VFRR 178 >gi|289665182|ref|ZP_06486763.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 227 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 13 TIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 72 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116 AV+V FLF++MMLDID R + G++ +G++ A LI S Sbjct: 73 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRSATPF 128 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 129 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 188 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 189 GEQSRVKAGDRLRMVKMAVEKPV 211 >gi|254796410|ref|YP_003081246.1| NADH dehydrogenase i, j subunit [Neorickettsia risticii str. Illinois] gi|254589647|gb|ACT69009.1| NADH dehydrogenase i, j subunit [Neorickettsia risticii str. Illinois] Length = 189 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 116/196 (59%), Gaps = 20/196 (10%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L +AI SSF VV+ RN +++V L+ AF ++ L L G E ++++ LVVYVGA+ + Sbjct: 6 FLLVLVAIFSSFRVVSCRNVVHAVLYLVLAFFTSSVLLLAAGLEVLSLMLLVVYVGAIAI 65 Query: 69 FFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 FLF++MML+ D +E++ + ++G FI +L L++ + + + E + Sbjct: 66 LFLFVVMMLNSDDFKKGVEMSVAK----YVGLLFIALLPFFLVLSSYD----DTQQERTY 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + ++++IG VLYT Y Y +SG +LLL+M+ AI + L + D K Q + +Q+ + Sbjct: 118 V-----SIKDIGAVLYTDYVYLFHLSGVVLLLAMVAAISIALPSKSDTKCQVVREQISRS 172 Query: 184 PDNSIVMVKVKSGKGI 199 + + ++ V SGKG+ Sbjct: 173 --SVVRLLNVPSGKGV 186 >gi|254445138|ref|ZP_05058614.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Verrucomicrobiae bacterium DG1235] gi|198259446|gb|EDY83754.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Verrucomicrobiae bacterium DG1235] Length = 167 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 19/177 (10%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M LFFY+F+ + + +F VV RNP+ + LI F+ A LF++L A F+A+I ++VY Sbjct: 1 MTDLFFYIFAAITLACAFAVVFSRNPVNAAMFLILTFLGMASLFVMLEAYFLAVIQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF---------IGILAAELIVCASNFM 113 GAV+V FLFIIM+LD+ E K + S +GI +++ I + + Sbjct: 61 AGAVVVLFLFIIMLLDVKEESKAKLKPLTLVASVIGFAILLVGVVGITSSDNIKATTETL 120 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +A G ++N G L+T Y P++++GF+LL++MIG IVL R + D Sbjct: 121 PEAA----------GATLKNFGYELFTTYQLPMQVTGFLLLVAMIGVIVLSKRVKTD 167 >gi|270158105|ref|ZP_06186762.1| NADH-quinone oxidoreductase J subunit [Legionella longbeachae D-4968] gi|289163630|ref|YP_003453768.1| NADH-quinone oxidoreductase chain J [Legionella longbeachae NSW150] gi|269990130|gb|EEZ96384.1| NADH-quinone oxidoreductase J subunit [Legionella longbeachae D-4968] gi|288856803|emb|CBJ10614.1| NADH-quinone oxidoreductase chain J [Legionella longbeachae NSW150] Length = 214 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 121/205 (59%), Gaps = 15/205 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ +AI ++F+V+ NP+ SV L+ F +A L++L AEF+A+I ++VYVGAV+ Sbjct: 10 FYIFAALAIGAAFMVIIQDNPVRSVLFLVLTFFASAALWILAEAEFLALILILVYVGAVM 69 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELI--VCASNFMV--FSAE 118 FLF++MML+ID+E+ + KR L + FIG+L + N V ++ Sbjct: 70 TLFLFVVMMLNIDVEIMKSHYKRYLPFGLILVALFIGLLMVSIPSGTFKKNVEVKGYAIN 129 Query: 119 GELSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +L + G +N E +G VLYT Y EI+ +LL+++I AI L+ R R K Sbjct: 130 SQLLEVKQNGAEQQPLSNTEALGMVLYTDYLLAFEIAAALLLIAIISAITLVHRGPRKSK 189 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ++ +Q+ ++ + + ++ +K+ K Sbjct: 190 RQNVKQQILTHKNQRVELINMKAEK 214 >gi|325924684|ref|ZP_08186122.1| NADH dehydrogenase subunit J [Xanthomonas perforans 91-118] gi|325544890|gb|EGD16235.1| NADH dehydrogenase subunit J [Xanthomonas perforans 91-118] Length = 220 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 6 TLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116 AV+V FLF++MMLDID R + G++ +G++ A LI + Sbjct: 66 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 121 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204 >gi|78048400|ref|YP_364575.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036830|emb|CAJ24523.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 219 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 5 TLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 64 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116 AV+V FLF++MMLDID R + G++ +G++ A LI + Sbjct: 65 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 181 GEQSRVKAGDRLRMVKMAVEKPV 203 >gi|251773158|gb|EES53711.1| putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum ferrodiazotrophum] Length = 173 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 35/191 (18%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ Q FFY F MA++ + LVVT R IYS +L+ FV+ AGLF++L A F+A + L+ Sbjct: 1 MIQQLPFFY-FGGMALVCAILVVTSRVAIYSAMALLGMFVHVAGLFIILEAPFLAGVQLL 59 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V +LF++M+L++ A +K+ +A LI A GE Sbjct: 60 VYAGAILVLYLFVVMLLNLQGGGATSLQKQTPWA------IALSLI----------AVGE 103 Query: 121 LSRLVFKGN-----------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 L L+ K N N E IG VLYTQY +P E++ +LL++++GAIV Sbjct: 104 LGYLLVKTNFYPKLPAIPHPSVPTLGNTETIGMVLYTQYLFPFEVASIVLLIALVGAIV- 162 Query: 164 MLRHRRDIKRQ 174 M R R +++ Sbjct: 163 MARGRGRFRQE 173 >gi|56707220|ref|YP_169116.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89257081|ref|YP_514443.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica LVS] gi|110669690|ref|YP_666247.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis FSC198] gi|115315438|ref|YP_764161.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica OSU18] gi|134301255|ref|YP_001121223.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|156503295|ref|YP_001429360.1| NADH dehydrogenase I, subunit J [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009473|ref|ZP_02274404.1| NADH dehydrogenase i, j subunit [Francisella tularensis subsp. holarctica FSC200] gi|187930997|ref|YP_001890981.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|224456281|ref|ZP_03664754.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254368317|ref|ZP_04984335.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica 257] gi|254368974|ref|ZP_04984987.1| hypothetical protein FTAG_00804 [Francisella tularensis subsp. holarctica FSC022] gi|254371436|ref|ZP_04987437.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis FSC033] gi|254874058|ref|ZP_05246768.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis MA00-2987] gi|290952998|ref|ZP_06557619.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica URFT1] gi|295313818|ref|ZP_06804391.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica URFT1] gi|56603712|emb|CAG44673.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89144912|emb|CAJ80260.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica LVS] gi|110320023|emb|CAL08056.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis FSC198] gi|115130337|gb|ABI83524.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|134049032|gb|ABO46103.1| NADH dehydrogenase I subunit J [Francisella tularensis subsp. tularensis WY96-3418] gi|134254125|gb|EBA53219.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica 257] gi|151569675|gb|EDN35329.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis FSC033] gi|156253898|gb|ABU62404.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121895|gb|EDO66065.1| hypothetical protein FTAG_00804 [Francisella tularensis subsp. holarctica FSC022] gi|187711906|gb|ACD30203.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254840057|gb|EET18493.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158328|gb|ADA77719.1| NADH dehydrogenase i, j subunit [Francisella tularensis subsp. tularensis NE061598] Length = 201 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 14/203 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ + FY F+ +AII + ++V NP+ SV ++IF F+ A ++++L ++A++ +V Sbjct: 1 MVVTDILFYTFASLAIIFALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAE 118 VYVGAV+V FLF++ MLD+ +E ++G +G FF + A ++VCA + + ++A Sbjct: 61 VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYAL--AAVVVCAIFATVISYAAT 112 Query: 119 GELSRLVFKG--NNVENIGKVLYTQYA-YPLEISGFILLLSMIGAIVLMLR-HRRDIKRQ 174 + + +G ++ IG +++ Y E+ FILL +M AI L LR R+ K Sbjct: 113 NVFAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTV 172 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 D ++Q++ + + MVK+ S Sbjct: 173 DPAQQVKVRAKDRLTMVKMPSNN 195 >gi|58582849|ref|YP_201865.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427443|gb|AAW76480.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas oryzae pv. oryzae KACC10331] Length = 227 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 13 TLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 72 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELS- 122 AV+V FLF++MMLDID R + G++ +G I+A ++ + A Sbjct: 73 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIMAVAMLAQMVTLIGVKARSATPF 128 Query: 123 ------RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 129 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 188 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 189 GEQSRVKAGDRLRMVKMAVEKPV 211 >gi|84624715|ref|YP_452087.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577687|ref|YP_001914616.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368655|dbj|BAE69813.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522139|gb|ACD60084.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 220 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 6 TLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELS- 122 AV+V FLF++MMLDID R + G++ +G I+A ++ + A Sbjct: 66 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIMAVAMLAQMVTLIGVKARSATPF 121 Query: 123 ------RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204 >gi|294624669|ref|ZP_06703339.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666768|ref|ZP_06732002.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601025|gb|EFF45092.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603429|gb|EFF46846.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 219 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S+ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 5 SIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 64 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116 AV+V FLF++MMLDID R + G++ +G++ A LI + Sbjct: 65 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 181 GEQSRVKAGDRLRMVKMAVEKPV 203 >gi|145932445|ref|YP_001165357.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum] gi|110169643|gb|ABG54108.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum] gi|188484472|gb|ACD50861.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum] Length = 236 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 45/240 (18%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++FFY FS +A+ S+ V+ N IYS F LI F N+ GL L+ EF++++ ++ Sbjct: 1 MNFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 +YVGA+ V FLF+IMMLD++I + + K LG + I I F++FS Sbjct: 61 IYVGAITVLFLFVIMMLDVNILI-DKNKINNNLG-YLPIIFLISFIFFLETFIMFSKVFT 118 Query: 118 -----------EGELSRLVF-----KG----------------------NNVENIGKVLY 139 E++ L F KG N+E IG++LY Sbjct: 119 SYYHLINNSFFNKEVNTLFFFKDSMKGTFEIFVDVKPFLKNFINQVDTITNIETIGQILY 178 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 + YA+ +G ILL+++IGA+ L + +R +Q I KQL + +I V S K + Sbjct: 179 SYYAFFFLAAGIILLIALIGAVTLTKKEKRKNFKQKIYKQLSRDSLKAI--FNVNSNKSV 236 >gi|119897696|ref|YP_932909.1| NADH-ubiquinone oxidoreductase subunit J [Azoarcus sp. BH72] gi|119670109|emb|CAL94022.1| NADH-ubiquinone oxidoreductase, chain J probable [Azoarcus sp. BH72] Length = 200 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 114/201 (56%), Gaps = 10/201 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY + + + + V+T RNP+++ L+ +F A G++LLL AEF+A+ ++ Sbjct: 1 MEFKTAVFYFLAAILVFAGLRVITARNPVHAALFLVLSFFTAGGIWLLLQAEFLAITLVM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++ R ++GF +G L L+V ++ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLD----RIRQGFWNYLPVGALIGILMVVEMAMVLGGRYFD 116 Query: 121 LSRLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 L + +N +G+VLYT Y YP E++ +L+++M+ A+ L LR R+ K Sbjct: 117 LDSMPAPPPAAADYSNTAELGRVLYTDYVYPFELASLVLVVAMVAAVSLTLRKRKGNKYV 176 Query: 175 DISKQLESNPDNSIVMVKVKS 195 S Q+ + + +VK+ + Sbjct: 177 QPSDQVAVKREGRVELVKMPA 197 >gi|164422216|gb|ABY55189.1| NADH dehydrogenase subunit 6 [Bambusa oldhamii] Length = 205 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL +LLG +F AMI+ VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM +I I EV G +G F I +L + + V++ Sbjct: 70 MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|81176537|ref|YP_398421.1| nad6 [Triticum aestivum] gi|400642|sp|Q02500|NU6M_WHEAT RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|21826|emb|CAA44009.1| NADH dehydrogenase (ubiquinone) [Triticum aestivum] gi|78675261|dbj|BAE47686.1| nad6 [Triticum aestivum] gi|169649070|gb|ACA62631.1| nad6 [Triticum aestivum] Length = 247 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 103/193 (53%), Gaps = 23/193 (11%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ + S A++S +VV +NP++SV I F + +GL +LLG +F AMI+ VV++ Sbjct: 17 RTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHI 76 Query: 64 GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELI 106 GA+ V FLF++MM +I I EV G +G F I +L Sbjct: 77 GAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRN 136 Query: 107 VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + V++ + V N+E +G +LYT Y+ +S ILL++MIGAIVL + Sbjct: 137 TTSLRYTVYAGK------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMH 190 Query: 167 HRRDIKRQDISKQ 179 +KRQD+ ++ Sbjct: 191 RTTKVKRQDVFRR 203 >gi|89280733|ref|YP_514639.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group] gi|289065047|ref|YP_003433858.1| NADH dehydrogenase subunit 6 [Oryza rufipogon] gi|74100100|gb|AAZ99264.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group] gi|74100155|gb|AAZ99318.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|74100209|gb|AAZ99371.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|285026129|dbj|BAI67962.1| NADH dehydrogenase subunit 6 [Oryza rufipogon] gi|285026159|dbj|BAI67991.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group] Length = 205 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + AGL +LLG +F AMI+ VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFPILVFCDTAGLLILLGLDFSAMISPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM +I I EV G +G F I +L + + V++ Sbjct: 70 MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y+ +S ILL++MIGAIVL + ++RQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVQRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|54114097|gb|AAV29682.1| NT02FT1745 [synthetic construct] Length = 201 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 14/203 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ + FY F+ +AII + ++V NP+ SV ++IF F+ A ++++L ++A++ +V Sbjct: 1 MVVTVILFYTFASLAIIFALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAE 118 VYVGAV+V FLF++ MLD+ +E ++G +G FF + A ++VCA + + ++A Sbjct: 61 VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYAL--AAVVVCAIFATVISYAAT 112 Query: 119 GELSRLVFKG--NNVENIGKVLYTQYA-YPLEISGFILLLSMIGAIVLMLR-HRRDIKRQ 174 + + +G ++ IG +++ Y E+ FILL +M AI L LR R+ K Sbjct: 113 NVFAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTV 172 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 D ++Q++ + + MVK+ S Sbjct: 173 DPAQQVKVRAKDRLTMVKMPSNN 195 >gi|21243423|ref|NP_643005.1| NADH dehydrogenase subunit J [Xanthomonas axonopodis pv. citri str. 306] gi|21108975|gb|AAM37541.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas axonopodis pv. citri str. 306] Length = 220 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 114/203 (56%), Gaps = 12/203 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 6 TIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116 AV+V FLF++MMLDID R + G++ +G++ A LI + Sbjct: 66 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 121 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204 >gi|99034365|ref|ZP_01314389.1| hypothetical protein Wendoof_01000807 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 143 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 93/146 (63%), Gaps = 8/146 (5%) Query: 56 MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 M+ L+VY+GAV V FLF++MMLDID R ++GF F +G + + +F++ Sbjct: 1 MMVLIVYIGAVAVLFLFVVMMLDID----YIRLRQGFAKHFTLGAILCGVFFLIISFVIR 56 Query: 116 SAEGELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKR 173 S+ +S ++ + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ +K+ Sbjct: 57 SSTLNISNVINYNANNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKK 116 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q++ KQL + S+ +VK K GKG+ Sbjct: 117 QNVLKQLTQSS--SVKLVKAKFGKGV 140 >gi|194033221|ref|YP_002000558.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|60498739|dbj|BAC19862.2| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] Length = 205 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + AGL +LLG +F AMI LV+Y+GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFFILIFCDTAGLLILLGLDFFAMIFLVIYIGAIAVLFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM +I I EV G +G F I +L + + V++ Sbjct: 70 MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N++ +G +LYT Y +S ILL++MIGAIVL + ++RQD+ Sbjct: 130 K------VRNWTNLDTLGNLLYTYYFVWFLVSTLILLVAMIGAIVLTMHRTTKVQRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|148266245|ref|YP_001232951.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter uraniireducens Rf4] gi|146399745|gb|ABQ28378.1| NADH dehydrogenase subunit J [Geobacter uraniireducens Rf4] Length = 168 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 104/170 (61%), Gaps = 11/170 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++SLFF + + +A+ISS LV+T +NPI S SL+ F A +++L A F+A I ++VY Sbjct: 2 LESLFFIIVAAVAVISSILVITCKNPINSALSLVMTFFCLATFYVMLDAPFMAAIQVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA----- 117 GA++V +F+IM+L+I E + L IG+ L++ + + +F + Sbjct: 62 AGAIMVLIVFVIMLLNIRTETGR-KTTHAILAGSIIGL----LVLFQTCYFLFRSSLTGN 116 Query: 118 EGEL-SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +G + + LV + +VE IGK LYT++ P EI+ +LL+++IGA++L R Sbjct: 117 KGVMDTALVERVGHVELIGKALYTEFLLPFEITSLLLLVAIIGAVILTKR 166 >gi|291498625|gb|ADE08099.1| nad6-1 [Triticum aestivum] gi|291498626|gb|ADE08100.1| nad6-2 [Triticum aestivum] Length = 305 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 103/193 (53%), Gaps = 23/193 (11%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ + S A++S +VV +NP++SV I F + +GL +LLG +F AMI+ VV++ Sbjct: 17 RTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHI 76 Query: 64 GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELI 106 GA+ V FLF++MM +I I EV G +G F I +L Sbjct: 77 GAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRN 136 Query: 107 VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + V++ + V N+E +G +LYT Y+ +S ILL++MIGAIVL + Sbjct: 137 TTSLRYTVYAGK------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMH 190 Query: 167 HRRDIKRQDISKQ 179 +KRQD+ ++ Sbjct: 191 RTTKVKRQDVFRR 203 >gi|222053579|ref|YP_002535941.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. FRC-32] gi|221562868|gb|ACM18840.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. FRC-32] Length = 168 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 15/172 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++SLFF + + +A+ISS LV+T RNPI S SL+ F A +++L A F+A I ++VY Sbjct: 2 LESLFFLIVAAVAVISSILVITCRNPINSALSLVMTFFCLATFYVMLDAPFMAAIQVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121 GA++V +F+IM+L+I E + L +G+ LI+ + + F +G + Sbjct: 62 AGAIMVLIVFVIMLLNIRTETGR-KTTHAVLAGSIVGL----LILFQTCY--FLTKGSMT 114 Query: 122 -------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + L+ K +VE IGK LYT + P EI+ +LL+++IGA++L R Sbjct: 115 GLTGAMDTALIEKVGHVELIGKALYTDFLLPFEITSLLLLVAIIGAVILSKR 166 >gi|39995456|ref|NP_951407.1| NADH dehydrogenase I subunit J [Geobacter sulfurreducens PCA] gi|39982219|gb|AAR33680.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens PCA] gi|298504455|gb|ADI83178.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens KN400] Length = 167 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 98/163 (60%), Gaps = 3/163 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ FF + + +A+++S LV+T +NPI S SLI F A +++L A F+A I ++VY Sbjct: 1 METFFFTIVAAVAVLASILVITCKNPINSALSLILTFFCLATFYVMLDAPFMAAIQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGEL 121 GA++V +F+IM+L++ E LGS +GI +L + + +GE+ Sbjct: 61 AGAIMVLIVFVIMLLNVRTEAGRRSSHTVLLGS-LVGIFTLVQLFYVLNRSSLTGNKGEI 119 Query: 122 S-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 S L+ + + E IGK LYT + P E++ +LL+++IGA++L Sbjct: 120 SPELIHRIGHTEIIGKALYTDFLLPFEVTSILLLVAIIGAVIL 162 >gi|115278547|ref|YP_762337.1| NADH dehydrogenase subunit 6 [Sorghum bicolor] gi|114309668|gb|ABI60885.1| NADH dehydrogenase subunit 6 [Sorghum bicolor] Length = 271 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 23/187 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA+ V Sbjct: 5 VLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGAIAVS 64 Query: 70 FLFIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNF 112 FLF++MM +I I EV G +G F I +L + + + Sbjct: 65 FLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLGY 124 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 V++ + V N+E +G +LYT Y+ +S ILL++MIGAIVL + +K Sbjct: 125 TVYAGK------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVK 178 Query: 173 RQDISKQ 179 RQD+ ++ Sbjct: 179 RQDVFRR 185 >gi|145932352|ref|YP_001165400.1| NADH dehydrogenase subunit 6 [Phytophthora sojae] gi|110169595|gb|ABG54061.1| NADH dehydrogenase subunit 6 [Phytophthora sojae] Length = 236 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 45/238 (18%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++FFY FS +A+ S+ V+ N IYS F LI F N+ GL L+ EF++++ ++ Sbjct: 1 MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 +YVGA+ V FLF+IMMLD+++ + + + F + I I F++FS Sbjct: 61 IYVGAITVLFLFVIMMLDVNVLIDKNKINNNF--GYLPIIFLISFIFFLETFIMFSKVFT 118 Query: 118 -----------EGELSRLVF-----KG----------------------NNVENIGKVLY 139 E++ L F KG N+E IG++LY Sbjct: 119 SYYHLINNSFFNQEINTLFFFKDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILY 178 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 + YA+ ++G ILL+++IGA+ L + ++ I +Q+I KQL N +I V S K Sbjct: 179 SYYAFFFLVAGIILLIALIGAVTLTKKEKKKIFKQNIYKQLSRNSLKAI--FNVHSNK 234 >gi|291280348|ref|YP_003497183.1| NADH-quinone oxidoreductase subunit J [Deferribacter desulfuricans SSM1] gi|290755050|dbj|BAI81427.1| NADH-quinone oxidoreductase, J subunit [Deferribacter desulfuricans SSM1] Length = 166 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 100/170 (58%), Gaps = 17/170 (10%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+ +F+AI+S+ ++T NP++S ++ F + AG+F+ L AEF+A I ++VY Sbjct: 1 MEQVAFYILAFLAIVSALFMITRTNPVHSALWMLLTFFSVAGIFVQLDAEFIAAIQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF--------LGSFFIGILAAELIVCASNFMV 114 GA++V +LF++M+L+ K GF +G+ I+ + ++ V Sbjct: 61 AGAILVLYLFVVMLLN--------PKSHGFIKIPFRYAIGTVVSIIIVIQTLIAVKTTDV 112 Query: 115 FSAEGELSRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +G+++ V + NV+ GK L+T + P EI+ +LL++MIGAIVL Sbjct: 113 LGQKGDITDTVISQYGNVKLFGKALFTDFLVPFEIASILLLVAMIGAIVL 162 >gi|114151579|ref|YP_740380.1| NADH dehydrogenase subunit 6 [Zea perennis] gi|102567913|gb|ABF70830.1| NADH dehydrogenase subunit 6 [Zea perennis] Length = 209 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM +I I EV G +G F I +L + + V++ Sbjct: 70 MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLKYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|114151645|ref|YP_740422.1| NADH dehydrogenase subunit 6 [Zea mays subsp. parviglumis] gi|1843454|emb|CAA66370.1| mitochondrial complex I subunit 6 [Zea mays] gi|93116052|gb|ABE98685.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays] gi|93116096|gb|ABE98728.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays] gi|93116144|gb|ABE98775.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays] gi|102567978|gb|ABF70862.1| NADH dehydrogenase subunit 6 [Zea mays subsp. parviglumis] gi|102579645|gb|ABF70925.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays] Length = 220 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM +I I EV G +G F I +L + + V++ Sbjct: 70 MMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLKYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|260223135|emb|CBA33395.1| NADH-quinone oxidoreductase subunit J [Curvibacter putative symbiont of Hydra magnipapillata] Length = 260 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 11/180 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+FS + + ++F V+T RNP+++ L+ F AA +++LL AEF+++ ++VYVGAV+ Sbjct: 8 FYVFSAVLLFAAFRVITARNPVHAALYLVLTFFQAAMIWMLLKAEFLSITLVLVYVGAVM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAEL-IVCASNFMVFSAEGEL 121 V FLF++MM+DI++E + GF F + ++A E+ V F V + Sbjct: 68 VLFLFVVMMMDINVE----NLRVGFWKHFPLAAIVGVVIALEMAAVLMGGFRVVDDPNAV 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + + NN + +GK+L+TQY LE++ ILL++MI + +Q + + L+ Sbjct: 124 ATAA-EANNAKELGKLLFTQYLVQLEVAAAILLVAMIXXXXXXXXSKWTQPKQRLRQLLK 182 >gi|11466584|ref|NP_066474.1| NADH dehydrogenase subunit 6 [Rhodomonas salina] gi|10444171|gb|AAG17745.1|AF288090_21 NADH dehydrogenase subunit 6 [Rhodomonas salina] Length = 207 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 119/208 (57%), Gaps = 28/208 (13%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS + + +F V+ RNPI+S+ L+F F NAA L +LLGA+F+A++ L+VYVGAV Sbjct: 8 FYLFSSLICVCAFSVIFSRNPIHSILFLVFLFFNAAALLILLGADFLAILFLIVYVGAVA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCA--------SNFM--- 113 V FLF++MML + K + +FF G IL A + +C NF+ Sbjct: 68 VLFLFVVMMLS-----GKLIKTK---INFFYGPLVILLAFIFLCEIFLIIEQNLNFLSSN 119 Query: 114 VFSAEGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 ++ L+ L ++ +NVE IG VLYT + Y + ILL++MIGAIVL L Sbjct: 120 IYFLNDILNPLFIWKDKIYCLSNVEIIGSVLYTYFFYFFIVGSLILLVAMIGAIVLTLYK 179 Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKS 195 R D+K Q I KQ + N + SI + K S Sbjct: 180 RNDLKTQFIFKQAKKNFEASIQLTKNDS 207 >gi|300122800|emb|CBK23815.2| unnamed protein product [Blastocystis hominis] Length = 195 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 114/196 (58%), Gaps = 7/196 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L+F +F+ + IIS F+ ++V N +Y+V LI AF ++ + LL +++A++ +++Y Sbjct: 1 MSNLYFNIFASIIIISVFMTISVNNAVYAVLFLILAFFSSMCILFLLNIDYLALMFILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-----SA 117 +GA+ + FLF++MML I I K F+ ++ +++ A F VF Sbjct: 61 IGAITILFLFVVMMLKIKINEKNTTKFISFINIIICCLIVYNVLLNADIFNVFLNNDLVY 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDI 176 S+L + +N++ +G+V++T Y + ++GF+LL+ MI AI+L R I+R Q + Sbjct: 121 NDWFSKL-YYVDNIKMLGQVIFTNYYFYFILAGFVLLIGMISAILLSKESTRVIRRYQLV 179 Query: 177 SKQLESNPDNSIVMVK 192 +Q+ + N++ +V Sbjct: 180 YQQISRDVSNAVFLVH 195 >gi|110225673|ref|YP_665679.1| NADH dehydrogenase subunit 6 [Nephroselmis olivacea] gi|6066188|gb|AAF03206.1|AF110138_38 NADH dehydrogenase subunit 6 [Nephroselmis olivacea] Length = 197 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/176 (40%), Positives = 106/176 (60%), Gaps = 7/176 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F +FS +AII LV+ +NP++SV LI F +AAGL L+L +F AM+ LVVYVGA+ Sbjct: 2 FSIFSSLAIICGILVIRAKNPVHSVLFLILVFCHAAGLLLMLDLDFFAMVFLVVYVGAIA 61 Query: 68 VFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAE-LIVCASNF--MVFSAEGELSR 123 V FLF++MML+I I EV E LG I E L+V +F M+ S+ L Sbjct: 62 VLFLFVVMMLNIKIEEVYETALPYLPLGGLIGLIFVTEILLVVERDFIPMISSSSLNLQY 121 Query: 124 LVF---KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + F + ++ IG+++YT Y + ++ ILL++MIGAIVL + +KRQ++ Sbjct: 122 IQFLPETSSTIQAIGELIYTYYFFYFIVASLILLIAMIGAIVLTMYKGAGVKRQEV 177 >gi|118602284|ref|YP_903499.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567223|gb|ABL02028.1| NADH dehydrogenase subunit J [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 202 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 16/207 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+ SF I+SS ++ RN +V L+ AF NAA +++LL AEF+A+ ++ Sbjct: 1 MNSEQIIFYILSFWFIVSSLAMIFSRNAAKAVLFLVLAFFNAASIWILLEAEFLAITLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113 VYVGAV+V FLF+I ML+ID + + F G +G++ A +IV + + Sbjct: 61 VYVGAVMVLFLFVIKMLNID----KSTLRAKFTGYLPLGLIVAAIIVAEMSLVLGANQFG 116 Query: 114 --VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 VFS+ R +N+ + LYT Y YP E++ +LL+++I AI L+ R+ Sbjct: 117 LDVFSSP---ERHGMDYSNITVLAMQLYTTYVYPFELAAVLLLIAIIAAITLVYRNETSR 173 Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKG 198 K+Q IS+Q+ + + +V + KG Sbjct: 174 KKQSISEQVNVQAKDRVRLVSITPSKG 200 >gi|163854294|ref|YP_001633640.1| NADH dehydrogenase subunit 6 [Negombata magnifica] gi|163639449|emb|CAM06605.1| NADH dehydrogenase subunit 6 [Negombata magnifica] Length = 195 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 32/197 (16%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F IIS +V++ N ++SV LI +F +A LF+ L +F+A+I L+VYVGA+ + F Sbjct: 8 FCMFLIISGIMVISALNSVHSVLWLIVSFTSAVVLFIFLEVDFIALIFLIVYVGAIAILF 67 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLG-------SFFIGILAAELIVCASNFMVFSA------ 117 LF+IMML++ RG L F IG+ +V + FS Sbjct: 68 LFVIMMLNL-------TDLRGLLDMSNYMPVGFIIGV-----VVFFEVLLFFSWGFGDLL 115 Query: 118 EG-ELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 EG + R F K +N++ +G++LYT YAY ++ FILL++MIGAIVL R IK+Q Sbjct: 116 EGIDYFRWDFLEKISNIQVLGELLYTNYAYLFILASFILLVAMIGAIVLTFSERSQIKKQ 175 Query: 175 D----ISKQLESNPDNS 187 + IS++L+ + S Sbjct: 176 ESFIQISRELDEIKNES 192 >gi|116624762|ref|YP_826918.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus Solibacter usitatus Ellin6076] gi|116227924|gb|ABJ86633.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Solibacter usitatus Ellin6076] Length = 169 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 100/168 (59%), Gaps = 9/168 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ FY+F+ M + L +T R+ ++S SLI + + AGL+LL AEF+ + +V Sbjct: 1 MLTDTILFYIFAVMVLAGGILTITRRSAVHSAISLIVSLLGVAGLYLLQQAEFLFAVQIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 +YVG ++V FLF+IM++++D + K+R F + I ++A L+ + ++ +G Sbjct: 61 LYVGGIMVLFLFVIMLVNLD----QAAKERQFNRQWSIALIAVALVGAQVGYFLYKGKGS 116 Query: 120 ----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 E+ +NVE + L+T+Y P EI+ +LL++++G++V+ Sbjct: 117 FRIAEVIAPAAVTHNVEQVADSLFTEYLLPFEIASILLLVAVVGSVVM 164 >gi|218673002|ref|ZP_03522671.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli GR56] Length = 166 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 99/168 (58%), Gaps = 3/168 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ +++I++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFAAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF-FIGILAAELIVCASNFMVFSAEGEL 121 VGA++V FLF+IMM+D+ V + G L + +G+L E++V FS + Sbjct: 61 VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLSALVLVGLLGVEMLVLVLWSNRFSVIEPV 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + G+ + + L+ Y P EI+ ILL ++IGAIVL + + Sbjct: 121 A--MRGGDQIRQLSTTLFADYLLPFEIASVILLAALIGAIVLARKEQE 166 >gi|213018784|ref|ZP_03334592.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995735|gb|EEB56375.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 143 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 93/146 (63%), Gaps = 8/146 (5%) Query: 56 MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 M+ ++VY+GAV V FLF++MMLDID R ++GF +G + + +F++ Sbjct: 1 MMVMIVYIGAVAVLFLFVVMMLDID----YIRLRQGFAKHCTLGAMLCVVFFLVISFVIR 56 Query: 116 SAEGELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKR 173 S+ +S ++ + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ +K+ Sbjct: 57 SSAPNISNVINYNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKK 116 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q++ KQL + +S+ +VK K GKG+ Sbjct: 117 QNVLKQLTQS--SSVKLVKAKFGKGV 140 >gi|289667370|ref|ZP_06488445.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 194 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 106/183 (57%), Gaps = 12/183 (6%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++VYVG Sbjct: 6 TIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------ELIVCASNFMVFS 116 AV+V FLF++MMLDID R + G++ +G++ A LI S Sbjct: 66 AVMVLFLFVVMMLDIDTS----RLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRSATPF 121 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181 Query: 177 SKQ 179 +Q Sbjct: 182 GEQ 184 >gi|114151611|ref|YP_740454.1| NADH dehydrogenase subunit 6 [Zea luxurians] gi|110287607|gb|ABG65653.1| NADH dehydrogenase subunit 6 [Zea luxurians] Length = 375 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 23/184 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA+ V Sbjct: 5 VLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGAIAVS 64 Query: 70 FLFIIMMLDIDI-EVAEPRKK----RGFLGSFF------------IGILAAELIVCASNF 112 FLF++MM +I I E+ E + G +G F I +L + + Sbjct: 65 FLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLKY 124 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 V++ + V N+E +G +LYT Y+ +S ILL++MIGAIVL + +K Sbjct: 125 TVYAGK------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVK 178 Query: 173 RQDI 176 RQD+ Sbjct: 179 RQDV 182 >gi|332662322|ref|YP_004445110.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliscomenobacter hydrossis DSM 1100] gi|332331136|gb|AEE48237.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliscomenobacter hydrossis DSM 1100] Length = 165 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 99/169 (58%), Gaps = 7/169 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+ S +AII + V RN +YSV SL+ F AG++L L AEFVA++ ++VY Sbjct: 1 MDQVIFYILSTIAIIGALSTVVSRNAMYSVLSLVVTFFALAGIYLQLNAEFVAIVHIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCAS-NFMVFSAEG 119 GA++V FLF++MML+++ RK +L + +GI+ A L+ AS N + A G Sbjct: 61 AGAIMVLFLFVVMMLNLNTVTVTIRKNPLIKYL-AVLVGIIMAALLGFASMNTALPIARG 119 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 S V V+ +GK+L+ +Y P E+ +L+ +M+G IVL + Sbjct: 120 NTSAEV---GTVKVLGKMLFNEYLLPFELISVLLIATMVGVIVLTKKEE 165 >gi|58201991|gb|AAW67046.1| NADH dehydrogenase subunit 6 [Phytophthora infestans] gi|58202038|gb|AAW67092.1| NADH dehydrogenase subunit 6 [Phytophthora infestans] Length = 236 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 45/240 (18%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++FFY FS +A+ S+ V+ N IYS F LI F N+ GL L+ EF++++ ++ Sbjct: 1 MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 +YVGA+ V FLF+IMMLD+++ + + + F + I I F++FS Sbjct: 61 IYVGAITVLFLFVIMMLDVNVLIDKNKINNNF--GYLPIIFLISFIFFLETFVMFSKVFT 118 Query: 118 -----------EGELSRLVF-----KG----------------------NNVENIGKVLY 139 E++ L F KG N+E IG++LY Sbjct: 119 SYYHLINNSFFNQEVNTLFFFRDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILY 178 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 + YA+ +G ILL+++IGA+ L + ++ +Q+I KQL N +I V S K I Sbjct: 179 SYYAFFFLAAGIILLIALIGAVTLTKKEKKKNFKQNIYKQLSRNSLKAI--FNVNSHKFI 236 >gi|9695394|ref|NP_037616.1| NADH dehydrogenase subunit 6 [Phytophthora infestans] gi|6692646|gb|AAF24789.1|U17009_22 NADH dehydrogenase subunit 6 [Phytophthora infestans] gi|58012152|gb|AAW62560.1| NADH dehydrogenase subunit 6 [Phytophthora infestans] Length = 236 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 43/225 (19%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++FFY FS +A+ S+ V+ N IYS F LI F N+ GL L+ EF++++ ++ Sbjct: 1 MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 +YVGA+ V FLF+IMMLD+++ + + + F + I I F++FS Sbjct: 61 IYVGAITVLFLFVIMMLDVNVLIDKNKINNNF--GYLPIIFLISFIFFLETFVMFSKVFT 118 Query: 118 -----------EGELSRLVF-----KG----------------------NNVENIGKVLY 139 E++ L F KG N+E IG++LY Sbjct: 119 SYYHLINNSFFNQEVNTLFFFRDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILY 178 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 + YA+ +G ILL+++IGA+ L + ++ +Q+I KQL N Sbjct: 179 SYYAFFFLAAGIILLIALIGAVTLTKKEKKKNFKQNIYKQLSRNS 223 >gi|313672287|ref|YP_004050398.1| NADH dehydrogenase subunit j [Calditerrivibrio nitroreducens DSM 19672] gi|312939043|gb|ADR18235.1| NADH dehydrogenase subunit J [Calditerrivibrio nitroreducens DSM 19672] Length = 166 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 102/170 (60%), Gaps = 17/170 (10%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L FY+ +F+AIISS ++T NP++S ++ F + AG+F+ L AEF+A I ++VY Sbjct: 1 MEQLGFYILAFVAIISSLFMITRENPVHSALWMLLTFFSVAGIFVQLNAEFIAAIQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG---SFFIGILAA-----ELIVCASNFMV 114 GA++V +LF++M+L+ K +GF+ + +GI+A+ ++++ + V Sbjct: 61 AGAILVLYLFVVMLLN--------PKSKGFIKIPFRYALGIVASFVVLIQILITLQSANV 112 Query: 115 FSAEGELSRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G+ + ++ K NV+ G L+ Y P EI +LL++MIGAIVL Sbjct: 113 IGRSGQYTAEIYEKYGNVKIFGYELFNNYLVPFEIVSVMLLVAMIGAIVL 162 >gi|11497476|ref|NP_042266.1| NADH dehydrogenase (ubiquinone), subunit 6 [Prototheca wickerhamii] gi|3122569|sp|Q37626|NU6M_PROWI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|467867|gb|AAD12654.1| NADH dehydrogenase (ubiquinone), subunit 6 [Prototheca wickerhamii] Length = 207 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/194 (38%), Positives = 114/194 (58%), Gaps = 26/194 (13%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+FS + +IS LV+ RNP++SV L+ F NAAGL +LLG +F A+I LVVYVGA+ Sbjct: 5 FYIFSSLTLISGSLVIQARNPVHSVLFLVLVFFNAAGLLVLLGLDFFALIFLVVYVGAIA 64 Query: 68 VFFLFIIMMLDIDI-EVAEPRKKR----GFLGSFF------------IGILAAELIVCAS 110 V FLF++MML+I I E++E R + G LG F I +L+ ++ Sbjct: 65 VLFLFVVMMLNIRITEISEKRLRYLPVGGVLGVLFLFEICILIDNDCIPLLSYDI----E 120 Query: 111 NFMVFSAEGELSRLVFK-----GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 N + + +LS + ++ + ++ +G +LYT Y Y ++ ILL++MIGAIVL + Sbjct: 121 NTALLANYNQLSFIDWRMYLSTSHTIDALGSLLYTYYFYFFLVASLILLVAMIGAIVLTM 180 Query: 166 RHRRDIKRQDISKQ 179 + IKRQ + Q Sbjct: 181 QKGIRIKRQQVFLQ 194 >gi|149909812|ref|ZP_01898463.1| putative oxidoreductase [Moritella sp. PE36] gi|149807144|gb|EDM67100.1| putative oxidoreductase [Moritella sp. PE36] Length = 190 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 99/186 (53%), Gaps = 14/186 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FF L + +AI + LVV RNPI+S SL+ FV A LF+LLG+ F+A+I L VY Sbjct: 1 MEQQFFILLALVAIGTGLLVVVARNPIHSALSLVACFVQIAALFVLLGSPFLAVIQLFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAEGE 120 VGA++V FLF+IMMLD+ E R S FI G + A + + A + + Sbjct: 61 VGAIMVLFLFVIMMLDVRKEA----HGRFINNSRFIQKGAIPAIVALLALATELLFLLSQ 116 Query: 121 LSRL--------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 SRL V + + L+ + P E++ ILL+++IGA+VL + + K Sbjct: 117 SSRLHAVMTTQSVIGDEPTKQLSLTLFRDFLLPFEVASVILLVALIGAVVLAQSNGTNHK 176 Query: 173 RQDISK 178 + K Sbjct: 177 PSEHKK 182 >gi|332968225|gb|EGK07302.1| NADH-quinone oxidoreductase subunit J [Kingella kingae ATCC 23330] Length = 215 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 115/196 (58%), Gaps = 7/196 (3%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+F+ + + + VT +NP+++ L+ F +A ++LL+ AEF+ + +VVYVGA Sbjct: 6 VLFYMFAAIILYGALQTVTAKNPVHATLHLVLTFCVSAMMWLLMQAEFLGITLVVVYVGA 65 Query: 66 VIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIVC--ASNFMVFSAEGEL 121 V+V FLF++MML+ID E E RK R + +G+L A +++ + + G + Sbjct: 66 VMVLFLFVVMMLNIDAE--EMRKGFWRHAPAALTVGVLMAAVLIAVLVAPDTALNQFGLM 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + +NV ++GK LYT Y + E++ +L+L M+ AI L+ R + KR D + Q++ Sbjct: 124 KDIPADYSNVRDLGKQLYTTYVWQFELAAVLLVLGMVAAIALVHRKSTNPKRIDPADQVK 183 Query: 182 SN-PDNSIVMVKVKSG 196 N + + MVK++S Sbjct: 184 VNAAEGRMRMVKMESA 199 >gi|256425959|ref|YP_003126612.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga pinensis DSM 2588] gi|256040867|gb|ACU64411.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga pinensis DSM 2588] Length = 167 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 100/170 (58%), Gaps = 9/170 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q + F + S ++IIS+ V+ +NP+ SV LI F AG +++L A+F+A++ ++ Sbjct: 3 MSLQQIVFGVLSIISIISALGVILSKNPVTSVLCLIVTFFTIAGHYIMLNAQFLAVVHII 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V FLF+IM+++++ E+ EP +KR +L + G A + E + Sbjct: 63 VYAGAIMVLFLFVIMLMNLNAEI-EP-QKRNWLK--YAG--AISGGALLLVLLGALREAD 116 Query: 121 LSRLVFKGNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 ++ L + + N+GK L+ QY P E+S + L +M+GA+V+ R Sbjct: 117 VTPLQPGSTDIGLISNLGKTLFNQYVVPFEVSSILFLSAMVGAVVIGKRE 166 >gi|299830440|ref|YP_003734811.1| NADH dehydrogenase subunit 6 [Pythium ultimum] gi|299830499|ref|YP_003734870.1| NADH dehydrogenase subunit 6 [Pythium ultimum] gi|269810817|gb|ACZ43846.1| NADH dehydrogenase subunit 6 [Pythium ultimum] gi|269810876|gb|ACZ43905.1| NADH dehydrogenase subunit 6 [Pythium ultimum] gi|269812130|gb|ACZ44428.1| NADH dehydrogenase subunit 6 [Pythium ultimum] gi|269812189|gb|ACZ44487.1| NADH dehydrogenase subunit 6 [Pythium ultimum] Length = 213 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 22/201 (10%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A+ S+ V+ N IYS F LI FVN+ GL L+ EF++++ +++YVGA+ V FLF+I Sbjct: 15 ALTSAIFVIYSTNTIYSAFFLILVFVNSTGLLLISEIEFISIMLIIIYVGAITVLFLFVI 74 Query: 75 MMLDIDIEVAEPRKKR-GFLGSFFI--GILAAELIVCASNFMVFSAEGELSRLVFKGN-- 129 MMLDI++ + + G+L F+ + E V S +F+ L F N Sbjct: 75 MMLDINVLIDKNNNNNFGYLPIIFLISFVFFLETFVMFSK--IFTTYYHLIEQSFFKNDL 132 Query: 130 -------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR--DIKRQ 174 N+E IG++LY+ YA+ +G ILL+++IGA+ L + ++ + + Sbjct: 133 FYNQVIYQLDNITNIETIGQILYSYYAFFFLAAGIILLIALIGAVTLTKKEKKKQNFLTK 192 Query: 175 DISKQLESNPDNSIVMVKVKS 195 ++ KQL N ++ +K K+ Sbjct: 193 NLYKQLSRNSLQAVFNIKNKN 213 >gi|189426178|ref|YP_001953355.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter lovleyi SZ] gi|189422437|gb|ACD96835.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter lovleyi SZ] Length = 170 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 103/174 (59%), Gaps = 15/174 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + S+FF L + +AI+S+ +VVT +NPI S SL+ F A + +L A F+A + ++ Sbjct: 1 MDISSVFFALVTVVAIVSALMVVTCKNPINSALSLVLTFFCLATYYAMLNAPFMAAVQII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V +F IM+L+I ++ + + LGS IGI A L++ +F G+ Sbjct: 61 VYAGAIMVLIVFTIMLLNIRVDANKKGSHQIALGS-VIGI--ATLLLSG----LFLTRGK 113 Query: 121 LSR--------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +S+ L+ + E IGKV++T + P E++ +LL++++GA++L R Sbjct: 114 VSQPVGQITSELINSKGHTELIGKVMFTDFLLPFEVTSILLLVAIVGAVILAKR 167 >gi|88607226|ref|YP_505038.1| NADH dehydrogenase I, J subunit [Anaplasma phagocytophilum HZ] gi|88598289|gb|ABD43759.1| NADH dehydrogenase I, J subunit [Anaplasma phagocytophilum HZ] Length = 201 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 115/201 (57%), Gaps = 12/201 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F+ F+ M + S+ VV NP+Y+V SLI F ++ LF+LLGAE VAM+ +VVY Sbjct: 1 MVGFLFFCFAGMVVFSAVAVVISSNPVYAVLSLILTFFISSVLFILLGAELVAMLLVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD+D + GF+ + I + LA L CA+ + +F + Sbjct: 61 VGAVAVLFLFVVMMLDMDF----VKSSHGFVRYYPICVALATALFGCAT-YAIFHTKAAF 115 Query: 122 SRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQD 175 R + + NV IG +YT+Y Y ++SG +LL++ IGA+VL +R + ++Q+ Sbjct: 116 IRGIGEAGASAMGNVFLIGSQMYTKYFYAFQMSGILLLVASIGALVLTVRSKAVKSRKQN 175 Query: 176 ISKQLESNPDNSIVMVKVKSG 196 + Q++ + + V G Sbjct: 176 VYAQVDRSSKVELCSPAVCKG 196 >gi|56791566|gb|AAW30321.1| NADH dehydrogenase subunit 6 [Philodendron hederaceum var. oxycardium] Length = 182 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 11/176 (6%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA+ FLF++ Sbjct: 6 ALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLILLGLDFSAMIFPVVHIGAIAASFLFVV 65 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSRLVFKG 128 MM +I I R S IG IL E+ N L V+ G Sbjct: 66 MMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYTVYAG 125 Query: 129 -----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 126 KVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 181 >gi|115278617|ref|YP_762486.1| NADH dehydrogenase subunit 6 [Tripsacum dactyloides] gi|114432108|gb|ABI74657.1| NADH dehydrogenase subunit 6 [Tripsacum dactyloides] Length = 333 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 27/187 (14%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA+ V Sbjct: 5 VLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGAIAVS 64 Query: 70 FLFIIMMLDIDI-EVAEPRKK----RGFLGSFF------------IGILAAELIVCASNF 112 FLF++MM +I I E+ E + G +G F I +L + + Sbjct: 65 FLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLGY 124 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI- 171 V++ + V N+E +G +LYT Y+ +S ILL++MIGAIVL + HR I Sbjct: 125 TVYAGK------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTM-HRTTIH 177 Query: 172 --KRQDI 176 KRQD+ Sbjct: 178 MVKRQDV 184 >gi|258593428|emb|CBE69767.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) (NDH-1, chain J) [NC10 bacterium 'Dutch sediment'] Length = 168 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 97/168 (57%), Gaps = 4/168 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L F + MA++++ LV+ +RNP+Y SL+ F+ +G++LLL A+F+A++ ++VY Sbjct: 1 MEWLVFVPLAAMALVTAALVIVLRNPVYCALSLVGTFLALSGIYLLLQAQFIAVVQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GA++V FLF++M+LD+ E+ R + +L I SN Sbjct: 61 AGAIMVLFLFVVMLLDLGHELPAWLQRDRSRFLLGVGAAALLLLELAIPIGSNDSRAPQG 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S +V N + +G++L+T + P EI+ ILL+++IGA+VL R Sbjct: 121 PYTSEVVGAIGNAQLVGRLLFTDFLIPFEITSVILLIAIIGAMVLARR 168 >gi|200004048|ref|YP_002221382.1| NADH dehydrogenase subunit 6 [Blastocystis sp. NandII] gi|156617373|gb|ABU87591.1| NADH dehydrogenase subunit 6 [Blastocystis sp. NandII] Length = 194 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 109/192 (56%), Gaps = 7/192 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF+LF+ + IIS F+ ++V N IY+V LI AF ++ + LL +++A++ +++YVGA+ Sbjct: 4 FFFLFASIIIISVFMTISVNNAIYAVLFLILAFFSSMCILFLLNVDYLALMFILIYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-----SAEGEL 121 + FLF++MML I I K F+ ++ +++ F VF + Sbjct: 64 TILFLFVVMMLKIKINEKNTTKFISFINIIICCLIIYNVLLNTDIFNVFLNTDLTYTNWF 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDISKQL 180 S L + +N++ +G+V++ Y + +SGF+LL+ MI AI+L + ++R Q + +QL Sbjct: 124 SNL-YYIDNIKMLGQVIFNNYYFYFILSGFVLLIGMISAILLSKESNKVVRRYQLVYQQL 182 Query: 181 ESNPDNSIVMVK 192 N++ +V Sbjct: 183 SREVSNAVFLVH 194 >gi|197120278|ref|YP_002140705.1| NADH dehydrogenase I subunit J [Geobacter bemidjiensis Bem] gi|197089638|gb|ACH40909.1| NADH dehydrogenase I, J subunit [Geobacter bemidjiensis Bem] Length = 167 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 97/163 (59%), Gaps = 3/163 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+S+FF + + +A+ISS LVVT +NPI S SL+ F A +++L A F+A ++VY Sbjct: 1 MESIFFLVVATVAVISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGEL 121 GA++V +F+IM+L++ E + F GS +G+ A + + S + A G + Sbjct: 61 AGAIMVLIIFVIMLLNVKAESGKRGSHAVFAGS-VLGLFALFQTVWFLSKGSMTGATGTM 119 Query: 122 SRL-VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + + +VE IGK L+T + P EI+ +LL +++GA++L Sbjct: 120 DKAQIISVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVIL 162 >gi|224109646|ref|XP_002333226.1| predicted protein [Populus trichocarpa] gi|224144011|ref|XP_002336100.1| predicted protein [Populus trichocarpa] gi|222835539|gb|EEE73974.1| predicted protein [Populus trichocarpa] gi|222872374|gb|EEF09505.1| predicted protein [Populus trichocarpa] Length = 201 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 21/181 (11%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F N +GL +LLG +F AMI VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSR 123 MM I I R S IG LI F + E L Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRY 124 Query: 124 LVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 V+ G N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI + Sbjct: 125 TVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFR 184 Query: 179 Q 179 + Sbjct: 185 R 185 >gi|325954443|ref|YP_004238103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Weeksella virosa DSM 16922] gi|323437061|gb|ADX67525.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Weeksella virosa DSM 16922] Length = 171 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 104/181 (57%), Gaps = 16/181 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ + FY+ + + ++S+ L+V RNPI+S+ LI F +G ++LL A+F+A++ ++ Sbjct: 1 MTIEEILFYVLAGLTVLSALLMVFSRNPIHSILYLIITFFCISGHYILLNAQFLAVVNII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE---VAEPRK-KRGFLGSFFIGILAAELIV--CASNFMV 114 VY GA++V FLF++M+++++ E P K L S IL +I V Sbjct: 61 VYAGAIMVLFLFVVMLMNLNSEKKSFGTPIKITVASLVSLLFIILTVGIITENGTPQTQV 120 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 A+GE+ +EN+G VLY++Y P E+S + + +MIGA++L ++D + Sbjct: 121 EMAKGEIGL-------IENLGSVLYSEYVLPFELSSILFISAMIGAVIL---SKKDKELL 170 Query: 175 D 175 D Sbjct: 171 D 171 >gi|162279922|ref|NP_064048.2| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris] gi|323435072|ref|YP_004222290.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima] gi|87248042|gb|ABD36075.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris] gi|148491425|dbj|BAA99358.2| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris] gi|317905725|emb|CBJ14110.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima] gi|319439805|emb|CBJ17517.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima] Length = 205 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 23/185 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA+ V FL Sbjct: 7 SSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66 Query: 72 FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114 F++MM I I EV G +G F I +L + + + V Sbjct: 67 FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTV 126 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQ 179 D+ ++ Sbjct: 181 DVFRR 185 >gi|329118914|ref|ZP_08247609.1| NADH-quinone oxidoreductase subunit J [Neisseria bacilliformis ATCC BAA-1200] gi|327464942|gb|EGF11232.1| NADH-quinone oxidoreductase subunit J [Neisseria bacilliformis ATCC BAA-1200] Length = 218 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 113/202 (55%), Gaps = 17/202 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY + + + + VTV+NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MSFQLIMFYTLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGIL--AAELIVCASNFMVFS 116 VYVGAV+V FLF++MML+ID+E E RK R + +G+L A +++ S + Sbjct: 61 VYVGAVMVLFLFVVMMLNIDVE--EMRKGFWRNAPVAATVGVLMAVALILILVSPKTNLA 118 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 A G + + +NV +G+ +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 119 AFGAMVDVPADHSNVRELGRQIYTTYMLPFELAAVLLLLGMVAAIALVHRKSNNPKRMDP 178 Query: 177 SKQLESNPDNSIVMVKVKSGKG 198 ++Q VKV + KG Sbjct: 179 AEQ-----------VKVDASKG 189 >gi|284039951|ref|YP_003389881.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma linguale DSM 74] gi|283819244|gb|ADB41082.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma linguale DSM 74] Length = 184 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 5/156 (3%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ VVT RNPIYSV +LI F +G ++LL A+F+A + ++VY GA++V FLF IM L Sbjct: 28 SAIGVVTARNPIYSVLALIATFFCLSGHYVLLNAQFLAAVNIIVYAGAIMVLFLFTIMFL 87 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-GELSRLVFKGNN--VENI 134 ++ E E + + S +G + +I+ + F SA+ +S F VEN+ Sbjct: 88 NLRKEDEESKTNLTKMASVVVGGML--MIMLITIFRAKSAQVPTVSATSFSAKTGLVENL 145 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G++LY+ Y P E++ + L++M+GA++L R D Sbjct: 146 GQLLYSDYILPFELASVLFLVAMVGAVMLGKREAGD 181 >gi|307101736|ref|YP_003875484.1| NADH dehydrogenase subunit 6 [Silene latifolia] gi|301338031|gb|ADK73323.1| NADH dehydrogenase subunit 6 [Silene latifolia] Length = 205 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 23/185 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA+ V FL Sbjct: 7 SSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66 Query: 72 FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114 F++MM I I EV G +G F I +L + + + V Sbjct: 67 FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTV 126 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQ 179 D+ ++ Sbjct: 181 DVFRR 185 >gi|78224536|ref|YP_386283.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter metallireducens GS-15] gi|78195791|gb|ABB33558.1| NADH dehydrogenase subunit J [Geobacter metallireducens GS-15] Length = 167 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 97/163 (59%), Gaps = 3/163 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ FF + + +A+++S LV+T +NPI S SLI F A L++ L A F+A I ++VY Sbjct: 1 METFFFMIVAAVAVLASILVITCKNPINSALSLILTFFCLATLYVTLDAPFMAAIQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGEL 121 GA++V +F+IM+L++ E GS IG+ + +L + + +G + Sbjct: 61 AGAIMVLIVFVIMLLNVRTESGRRSSHSVLFGS-LIGLFSLFQLFYLFNRSSLTGQKGAI 119 Query: 122 -SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 S L+ K + E IGK LYT + P E++ +LL+++IGA+VL Sbjct: 120 DSALINKVGHTELIGKALYTDFLLPFEVTSILLLVAIIGAVVL 162 >gi|296040749|gb|ADG85342.1| NADH dehydrogenase subunit 6 [Silene latifolia] Length = 190 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 23/185 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA+ V FL Sbjct: 7 SSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66 Query: 72 FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114 F++MM I I EV G +G F I +L + + + V Sbjct: 67 FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTV 126 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQ 179 D+ ++ Sbjct: 181 DVFRR 185 >gi|320148706|emb|CBJ23344.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima] Length = 205 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 23/185 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA+ V FL Sbjct: 7 SSLALVSGLMVVRAQNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66 Query: 72 FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114 F++MM I I EV G +G F I +L + + + V Sbjct: 67 FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTV 126 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQ 179 D+ ++ Sbjct: 181 DVFRR 185 >gi|313206206|ref|YP_004045383.1| NADH dehydrogenase subunit j [Riemerella anatipestifer DSM 15868] gi|312445522|gb|ADQ81877.1| NADH dehydrogenase subunit J [Riemerella anatipestifer DSM 15868] gi|315023109|gb|EFT36122.1| NADH-ubiquinone oxidoreductase chain J [Riemerella anatipestifer RA-YM] gi|325336347|gb|ADZ12621.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Riemerella anatipestifer RA-GD] Length = 165 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 103/171 (60%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+ S +A+IS+ V +NP+YS+ SL+ F + AGL++LL A+F+ ++ ++VY Sbjct: 1 MEQIVFYIISGLAVISAIYFVAAKNPLYSILSLVITFFSIAGLYILLNAQFLGIVQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA++V FL+++MML++ E E +K F G F G+L + ++ E Sbjct: 61 AGAIMVLFLYVLMMLNLK-EKDEGKKNNLMKFAGIFSAGLLLVGFVGALRGYV--GNELP 117 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 ++ + +N+G++L+ +Y P E++ ++L ++GA+++ ++D+ Sbjct: 118 VTEITEGVGLTKNLGRLLFNEYVLPFELASILILSGIVGAVLI---GKKDL 165 >gi|134095022|ref|YP_001100097.1| NADH dehydrogenase I subunit J [Herminiimonas arsenicoxydans] gi|133738925|emb|CAL61972.1| NADH-quinone oxidoreductase subunit J (NADH dehydrogenase I subunit J) (NDH-1 subunit J) [Herminiimonas arsenicoxydans] Length = 213 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 113/199 (56%), Gaps = 8/199 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + + ++ V+T NP+++ L+ +F AA L++LL AEF++++ ++ Sbjct: 1 MEFTTVLFYVFSAILVFAAIRVITDSNPVHAALFLVLSFCTAAALWMLLKAEFLSIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----S 116 VYVGAV+V FLF++MM+DI + + GF G + +IV ++F Sbjct: 61 VYVGAVMVLFLFVVMMVDIKLS----NVREGFWGYLPLAATIGVVIVLEMAAVLFRGFWK 116 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 A + N + +GK++YTQY Y E++ +LLL+M+ A+ L +R R+D K Sbjct: 117 AHTHVPEAAAMIGNTKELGKLIYTQYLYAFELAALLLLLAMVAAVALTMRKRKDTKYFAP 176 Query: 177 SKQLESNPDNSIVMVKVKS 195 ++ + + +VK+K+ Sbjct: 177 GDAVKVKSGDRLRVVKMKA 195 >gi|95928437|ref|ZP_01311185.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Desulfuromonas acetoxidans DSM 684] gi|95135708|gb|EAT17359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Desulfuromonas acetoxidans DSM 684] Length = 170 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q FFYL +F+A++S F V++ +NPI S SL+ F A +++L A F+A + ++VY Sbjct: 4 LQLFFFYLVAFVAVVSGFCVISCKNPINSAISLVMTFFCLAIFYVMLHAPFMAAVQIMVY 63 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGEL 121 GA++V +F++M+L+ EV R + G+F I + +++V + V G + Sbjct: 64 AGAIMVLIIFVMMLLNQGSEVIA-RYRHAVTGAFIFAIVMLVQIVVILKDGGVSGPVGPI 122 Query: 122 SRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + V + +VE IGK ++T + P EI+ +LL++++GA+VL R Sbjct: 123 NGDVVQSVGHVELIGKAMFTDFLLPFEIASILLLVAIVGAVVLAKRE 169 >gi|253702586|ref|YP_003023775.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M21] gi|251777436|gb|ACT20017.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M21] Length = 167 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 96/163 (58%), Gaps = 3/163 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+S+FF + + +A+ISS LVVT +NPI S SL+ F A +++L A F+A ++VY Sbjct: 1 MESIFFLVVAAVAVISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGEL 121 GA++V +F+IM+L++ E + R + +G+ A + + S + A G + Sbjct: 61 AGAIMVLIIFVIMLLNVKAESGK-RGSHAVIAGSVLGLFALFQTVWFISKGSMTGATGTM 119 Query: 122 SRL-VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + + +VE IGK L+T + P EI+ +LL +++GA++L Sbjct: 120 DKAQIVSVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVIL 162 >gi|255037826|ref|YP_003088447.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter fermentans DSM 18053] gi|254950582|gb|ACT95282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter fermentans DSM 18053] Length = 172 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 98/175 (56%), Gaps = 16/175 (9%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFY SF+ I+S+ +VV RNPI+SV LI F +G ++LL A+F+A + ++VY GA+ Sbjct: 7 FFYFLSFLTILSAVMVVVSRNPIHSVLYLILTFFTLSGHYILLNAQFLAAVNIIVYAGAI 66 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFL------GSFFIGILAAELIVCASNFMVFSAEGE 120 +V FLF+IM L++ + E + + G+ F+ + A F + + + Sbjct: 67 MVLFLFVIMFLNMKQDQEESKTNLTKIAATIVGGTVFVILFGAYRKTAIEPFNPQTYDSQ 126 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + +E++G +L+ Y P E++ +LL++M+GA++L +R+I + Sbjct: 127 IGM-------IESLGHMLFRDYLLPFELASILLLVAMVGAVLL---GKREIGERH 171 >gi|238023175|ref|ZP_04603601.1| hypothetical protein GCWU000324_03101 [Kingella oralis ATCC 51147] gi|237865558|gb|EEP66698.1| hypothetical protein GCWU000324_03101 [Kingella oralis ATCC 51147] Length = 217 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 103/188 (54%), Gaps = 12/188 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY + + + S+ VT +NP+++ L+ F +A +LL+ AEF+ + +VVYVGA Sbjct: 6 ILFYTLAAIILFSALKTVTAKNPVHAALWLVLTFCMSAITWLLMQAEFLGITLVVVYVGA 65 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE------- 118 V+V FLF++MML+IDIE R + +G+L A L++ M+F A Sbjct: 66 VMVMFLFVVMMLNIDIEAMRQGFWRHAPAALTVGVLMAALLI-----MIFVAPDTNLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + +NV ++G +YT Y P E++ +L+L M+ AI L+ R K D + Sbjct: 121 GAMKDIPADYSNVRDLGTQIYTTYLLPFELASVLLVLGMVAAIALVHRKSTRTKYMDPAL 180 Query: 179 QLESNPDN 186 Q+ NP+ Sbjct: 181 QVRVNPNE 188 >gi|164421017|ref|YP_001648538.1| NADH dehydrogenase subunit 6 [Iotrochota birotulata] gi|158938947|gb|ABW83873.1| NADH dehydrogenase subunit 6 [Iotrochota birotulata] Length = 183 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 95/169 (56%), Gaps = 4/169 (2%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 FS I +V++ N ++SV I AF++A LF+ L +F+A+I L+VYVGA+ + F Sbjct: 8 FSMSLIFXGIMVISALNSVHSVLWXIVAFISAXVLFIFLEVDFIALIFLIVYVGAIAILF 67 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS--RLVF-- 126 LF+IMML++ F IG++ ++ S++ V G S R F Sbjct: 68 LFVIMMLNLTDLKGLLDMSNYMPAGFMIGLVVFFEVLIYSSWGVSDLSGGRSYFRWDFIE 127 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 K N++ +G +LYT YAY ++ FILL++MIG IVL +IKRQ+ Sbjct: 128 KVTNIQGLGCILYTDYAYLFILASFILLVAMIGVIVLTFSISAEIKRQE 176 >gi|112253907|ref|YP_717162.1| NADH dehydrogenase subunit 6 [Brassica napus] gi|37591109|dbj|BAC98911.1| NADH dehydrogenase subunit 6 [Brassica napus] Length = 205 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 23/185 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S +VV +NP++SV I F + +GL LLLG +F AMI LVVY+GA+ V FL Sbjct: 7 SSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66 Query: 72 FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114 F++MM I I EV G +G F I +L + + + V Sbjct: 67 FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTV 126 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQ 179 D+ ++ Sbjct: 181 DVFRR 185 >gi|327398406|ref|YP_004339275.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hippea maritima DSM 10411] gi|327181035|gb|AEA33216.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hippea maritima DSM 10411] Length = 167 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 98/172 (56%), Gaps = 7/172 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+++ FY+ + + + + V+ +NP + ++ AF AGLF++L A+F AM+ L+VY Sbjct: 1 MEAIVFYIIAILTVGGALGVLLSKNPYRAALFMVLAFFGIAGLFVMLHAQFNAMLQLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMV-FSAEGE 120 GA+ V +M+++ R + + FIGI L A+LI A F + S G+ Sbjct: 61 AGAIAVMITLTMMVMNRRTLEGLKRFNSQWYWAAFIGIGLLADLIALAYKFKIDLSNAGK 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 L G+N + IG+VL+ Y P EI+ ILL++++GA+VL +RDIK Sbjct: 121 --NLALGGSNTKLIGEVLFKHYLLPFEITAIILLVALLGAVVLT---KRDIK 167 >gi|115531585|ref|YP_783947.1| NADH dehydrogenase subunit 6 [Aurelia aurita] gi|110226012|gb|ABG56244.1| NADH dehydrogenase subunit 6 [Aurelia aurita] Length = 190 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 21/176 (11%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F + IIS +VVT +P++S+ L+ +F+ AA +F+ L A+F+A+ TL++YVGA+ + Sbjct: 5 IFMILTIISGIMVVTAIHPVHSIIWLVLSFIGAAIVFIQLQADFIALATLIIYVGAIAIL 64 Query: 70 FLFIIMMLDI-------DIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 F+F++MML++ +I P LG + IG+ + + + E Sbjct: 65 FIFVLMMLNLSSFEFDGNISSIIPLGITSILGLITLIIGLEYSNI-----------NDPE 113 Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ++ K +++ IG LY YA L ++ ILL++MIGAI+L L+ KRQD Sbjct: 114 VEEILIKELLDIQTIGFQLYNSYAPHLIVASLILLVAMIGAIILTLQPHLAAKRQD 169 >gi|9280602|gb|AAF86489.1|AF279442_1 NADH dehydrogenase subunit 6 [Lupinus luteus] Length = 205 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL LLLG +F AMI LVVY+GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM I I EV G +G F I +L + + + V++ Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTQVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|124484827|ref|YP_001031209.1| NADH dehydrogenase subunit 6 [Amphimedon queenslandica] gi|113952599|gb|ABI48998.1| NADH dehydrogenase subunit 6 [Amphimedon queenslandica] Length = 197 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 30/193 (15%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 ++S+ V++ P+Y+V LI AF++ + +F+ +G ++ I ++VYVGA+ + FLF++ Sbjct: 4 GVVSAVKVISAVRPVYAVLWLISAFLSVSAVFIFIGLVYMGFIMIIVYVGAIAILFLFVM 63 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL----------SRL 124 MMLD E A G+ + I+ +IV V + GE SR Sbjct: 64 MMLDQGKEEA---------GTPIVNIIPMGMIVGVGFLWVAATGGEWVGAYITQQNHSRG 114 Query: 125 VF---KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR----DIKRQDI- 176 + G ++ IG+V+YT+Y+Y I +ILL++M+GAIVL RH + RQD+ Sbjct: 115 MIGGQPGGDIVAIGRVVYTEYSYMFIIVSYILLVAMVGAIVLTHRHGEYGPDEPMRQDVY 174 Query: 177 ---SKQLESNPDN 186 S+ + +P+ Sbjct: 175 IQTSRDIWGHPNQ 187 >gi|294670449|ref|ZP_06735331.1| hypothetical protein NEIELOOT_02168 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307913|gb|EFE49156.1| hypothetical protein NEIELOOT_02168 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 225 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 115/202 (56%), Gaps = 23/202 (11%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + FYL + + + + VTV+NP+++ L+ F +A +++L+ AEF+ + +VVYV Sbjct: 4 QLILFYLLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVVVYV 63 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAE-----LIVCASNFMVFS 116 GAV+V FLF++MML+ID+E E RK R + +G+L A L+ A++ F Sbjct: 64 GAVMVLFLFVVMMLNIDVE--EMRKGFWRNAPVAAVVGVLMAVALIMILVAPATDLAAF- 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G+++ + +NV +G +YT Y P E++ +L+L M+ AI L+ HR+ K + I Sbjct: 121 --GQMNDVPADHSNVRELGTQIYTTYLLPFELAAVLLVLGMVAAIALV--HRKTFKPKYI 176 Query: 177 SKQLESNPDNSIVMVKVKSGKG 198 NP + VKV + KG Sbjct: 177 ------NPADQ---VKVDANKG 189 >gi|109156547|ref|YP_654332.1| NADH dehydrogenase subunit 6 [Astrangia sp. JVK-2006] gi|108744082|gb|ABG02306.1| NADH dehydrogenase subunit 6 [Astrangia sp. JVK-2006] Length = 186 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 11/173 (6%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S +VV+ NP+ S+F L+ FVN+A FLLLG +F+A++ L+VYVGA+ V FLF++M+L Sbjct: 15 SGIMVVSALNPVLSIFWLVLVFVNSAVFFLLLGVDFLALMFLLVYVGAIAVLFLFVVMLL 74 Query: 78 DIDIEVAEPRKK--------RGFL-GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 ++ R++ GFL G FF +A+ + + V S + + Sbjct: 75 NLTDYPPVFREEIDMTNYIPIGFLIGVFFFSEIASSWFIISPR--VESWDLSFPWFLVSY 132 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 +N+E +G+VLY ++ F+LL++MIG IVL K+QD+ Q+ Sbjct: 133 HNIEALGQVLYVACFCLFLLASFVLLVAMIGVIVLTQETEPLTKKQDLFIQIN 185 >gi|83416415|gb|ABC18241.1| NADH dehydrogenase subunit 6 [Brassica oleracea var. botrytis] Length = 201 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL LLLG +F AMI LVVY+GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM I I EV G +G F I +L + + + V++ Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|322421841|ref|YP_004201064.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M18] gi|320128228|gb|ADW15788.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M18] Length = 167 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 7/165 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+S+FF + + +AIISS LVVT +NPI S SL+ F A +++L A F+A ++VY Sbjct: 1 MESIFFLVVAAVAIISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +F+IM+L++ +E + R L +G+ L M S G++ Sbjct: 61 AGAIMVLIIFVIMLLNVRVETVK-RGTHAVLAGSALGLFI--LFQTIWFLMKGSMTGQVG 117 Query: 123 RL----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + + +VE IGK L+T + P EI+ +LL +++GA++L Sbjct: 118 DMTKEQIVSVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVIL 162 >gi|15676177|ref|NP_273309.1| NADH dehydrogenase I chain J [Neisseria meningitidis MC58] gi|7225476|gb|AAF40707.1| NADH dehydrogenase I, J subunit [Neisseria meningitidis MC58] gi|316985181|gb|EFV64133.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis H44/76] gi|325135056|gb|EGC57684.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis M13399] gi|325141089|gb|EGC63592.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis CU385] gi|325145246|gb|EGC67525.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis M01-240013] gi|325145317|gb|EGC67595.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis M01-240013] gi|325199456|gb|ADY94911.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis H44/76] Length = 223 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 113/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY+F+ + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFQLILFYIFAVIILYGALKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|257852688|gb|ACV71356.1| NADH dehydrogenase subunit 6 [Abatia parviflora] Length = 178 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL +LLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIK 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 IRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|225024113|ref|ZP_03713305.1| hypothetical protein EIKCOROL_00981 [Eikenella corrodens ATCC 23834] gi|224943138|gb|EEG24347.1| hypothetical protein EIKCOROL_00981 [Eikenella corrodens ATCC 23834] Length = 225 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 115/202 (56%), Gaps = 23/202 (11%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + FYL + + + + VTV+NP+++ L+ F +A +++L+ AEF+ + +VVYV Sbjct: 4 QLILFYLLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVVVYV 63 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAE-----LIVCASNFMVFS 116 GAV+V FLF++MML+ID+E E RK R + +G+L A L+ A++ F Sbjct: 64 GAVMVLFLFVVMMLNIDVE--EMRKGFWRNAPVAAVVGVLMAVALIMILVAPATDLAAF- 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G+++ + +NV +G +YT Y P E++ +L+L M+ AI L+ HR+ K + I Sbjct: 121 --GQMNDVPADHSNVRELGTQIYTTYLLPFELAAVLLVLGMVAAIALV--HRKTFKPKYI 176 Query: 177 SKQLESNPDNSIVMVKVKSGKG 198 NP + VKV + KG Sbjct: 177 ------NPADQ---VKVDAKKG 189 >gi|319411264|emb|CBY91671.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J; NDH-1, chain J) [Neisseria meningitidis WUE 2594] Length = 223 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 113/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY+F+ + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|218767057|ref|YP_002341569.1| NADH dehydrogenase I chain J [Neisseria meningitidis Z2491] gi|121051065|emb|CAM07335.1| NADH dehydrogenase I chain J [Neisseria meningitidis Z2491] Length = 223 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 113/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY+F+ + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|269469177|gb|EEZ80719.1| NADH dehydrogenase I chain J [uncultured SUP05 cluster bacterium] Length = 203 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 116/201 (57%), Gaps = 10/201 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+FSF + SS ++ RN +V LI +F +AA +++LL AEF+A+ ++ Sbjct: 1 MEFEQILFYVFSFWFVASSLAMIFSRNAAKAVLFLILSFFSAASIWILLEAEFLAITLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF+I ML+ID + + F G +G++ A +I+ ++ SA+ Sbjct: 61 VYVGAVMVLFLFVIKMLNID----KSTLRAKFAGYLPLGLMVAAVIIAEMVLVLGSAQFG 116 Query: 121 L---SRLVFKGNNVENI---GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 L + V G + NI LYT Y YP E++ +LL+++I AI L+ R+ + K+Q Sbjct: 117 LDVVAAPVRHGADYSNITVLAMQLYTTYVYPFELAAVLLLIAIIAAITLVHRNEINRKKQ 176 Query: 175 DISKQLESNPDNSIVMVKVKS 195 I +Q+ + + +V + S Sbjct: 177 SIPEQVNVQAKDRVRLVSIAS 197 >gi|44889032|sp|P60497|NU6M_ARATH RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 Length = 205 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 98/185 (52%), Gaps = 23/185 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S +VV +NP++SV I F + +GL LLLG +F AMI LVVY+GA+ V FL Sbjct: 7 SSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIAVLFL 66 Query: 72 FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114 F++MM I I EV G +G F I +L + + + V Sbjct: 67 FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTV 126 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ + V N+E +G +LYT Y + ILL++MIGAIVL + +KRQ Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQ 179 D+ ++ Sbjct: 181 DVFRR 185 >gi|319787434|ref|YP_004146909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudoxanthomonas suwonensis 11-1] gi|317465946|gb|ADV27678.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudoxanthomonas suwonensis 11-1] Length = 215 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 14/185 (7%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 ++VRNP+ +V LI F + A +LL+GAEF+ + ++VYVGAV+V FLF++MMLDID+ Sbjct: 23 ISVRNPVNAVLCLILTFFSVACTWLLVGAEFLGVALILVYVGAVMVLFLFVVMMLDIDVA 82 Query: 83 VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR---------LVFKGNNVEN 133 + G++ F + +++ + + + L +N Sbjct: 83 AL----REGWV-RFLPVGVVVAVVMLVQVLALIGVKARTATPFPADNAAALAADASNTRW 137 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKV 193 + + L+TQY P E + IL +++I A+++ LR R IK Q+ ++Q + + MV + Sbjct: 138 LAETLFTQYLLPFEFAAVILTVAVIAAVMITLRKRTGIKTQNPAEQSRVKAADRLRMVSM 197 Query: 194 KSGKG 198 + K Sbjct: 198 PAEKA 202 >gi|162452498|ref|YP_001614865.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|161163080|emb|CAN94385.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 212 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 13/155 (8%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF L S + ++ V RNPI L+ + V AGL+L+L AEF+A I ++VY GA+ Sbjct: 8 FFGLASLLVLLGGLATVAARNPIRGAMGLLTSIVGIAGLYLMLSAEFLAAIQILVYAGAI 67 Query: 67 IVFFLFIIMMLDI------DIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 ++ FLF+IM+L D A PR G LG+ IG LA L+ AS V + Sbjct: 68 VILFLFVIMLLGPSATSPRDARTAVPRYVGAGVLGASSIGALA--LVASASKPGVLAVPA 125 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 L +E +G L+T+ P E+SG +LL Sbjct: 126 APESL----GTIEGLGHELFTKGIVPFELSGALLL 156 >gi|294788066|ref|ZP_06753310.1| NADH dehydrogenase (ubiquinone), J subunit [Simonsiella muelleri ATCC 29453] gi|294484359|gb|EFG32042.1| NADH dehydrogenase (ubiquinone), J subunit [Simonsiella muelleri ATCC 29453] Length = 215 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 107/187 (57%), Gaps = 6/187 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FYLF+ + + + V +NP+++ L+ F +A ++LL+ AEF+ + +V Sbjct: 1 MTFQLILFYLFAAIILYGALQTVLAKNPVHATLHLVLTFCVSAMMWLLMQAEFLGITLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIVC--ASNFMVFS 116 VYVGAV+V FLF++MML+IDIE E RK R + +G+L A ++ + + Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIE--EMRKGFWRHAPAAMVVGVLMAVALIAILVAPDTALN 118 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G + + +NV ++G LYT Y + E++ +L+L M+ AI L+ R + KR D Sbjct: 119 QFGLMKDIPADYSNVRDLGIQLYTTYMWQFELAAVLLVLGMVAAIALVHRKSTNPKRIDP 178 Query: 177 SKQLESN 183 + Q++ N Sbjct: 179 ADQVKVN 185 >gi|255019916|ref|ZP_05291991.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus ATCC 51756] gi|254970696|gb|EET28183.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus ATCC 51756] Length = 198 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 126/201 (62%), Gaps = 8/201 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +L FY+FS + ++S+ LV+T RNP+Y+ L+ AF NAA LFLLLGAEF+ +I ++ Sbjct: 1 MLVTTLLFYVFSAILLLSALLVITARNPVYASLYLVLAFFNAAALFLLLGAEFLGLILIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-G 119 VYVGAV+V FLF++MMLDI++ R + GFL +G+ A L V + ++A G Sbjct: 61 VYVGAVMVLFLFVVMMLDINLA----RLQEGFLHYLPLGLAVAILGVLELAAVFWTAPLG 116 Query: 120 EL---SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + L +N +G +LYTQY YP EI+ ILL+++I AI L LR R K QDI Sbjct: 117 HVPAPAALPANADNTRALGGLLYTQYLYPFEIAAVILLIAIIAAIALTLRRRPQSKTQDI 176 Query: 177 SKQLESNPDNSIVMVKVKSGK 197 +QL + +V ++ + Sbjct: 177 GRQLAVKVSERLRLVDLRRPR 197 >gi|227822760|ref|YP_002826732.1| putative NADH-ubiquinone oxidoreductase chain J protein [Sinorhizobium fredii NGR234] gi|227341761|gb|ACP25979.1| putative NADH-ubiquinone oxidoreductase chain J protein [Sinorhizobium fredii NGR234] Length = 166 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 3/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ +A+I++ +VV RNP++S +L+ F+ + +F+LL A +A++ + VY Sbjct: 1 MDQGFFLLFAAVAVITALIVVLARNPVHSALALMACFLQISAVFVLLEAPLLAVVQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS-FFIGILAAELIVCASNFMVFSAEGEL 121 VGA++V FLF+IMM+D+ V + G L + + +L AE++V + FSA Sbjct: 61 VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLPALVLLVLLGAEMLVLVLSSERFSATEPA 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++ G+ + L+ Y P E++ ILL +++GAIVL Sbjct: 121 AK--GGGDQIREFSTTLFADYLLPFEVASVILLAALVGAIVL 160 >gi|316996025|dbj|BAD83537.2| NADH dehydrogenase subunit 6 [Nicotiana tabacum] Length = 228 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV LI F N +GL LLLG +F AMI VVY+GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFLIPVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVLFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM I I EV G +G F I +L + + + V++ Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLLFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|133900454|gb|ABO41393.1| NADH dehydrogenase subunit 6 [Flacourtia jangomas] gi|133900536|gb|ABO41434.1| NADH dehydrogenase subunit 6 [Populus maximowiczii] gi|257852690|gb|ACV71357.1| NADH dehydrogenase subunit 6 [Idesia polycarpa] Length = 178 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL +LLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900462|gb|ABO41397.1| NADH dehydrogenase subunit 6 [Hasseltia floribunda] gi|133900538|gb|ABO41435.1| NADH dehydrogenase subunit 6 [Prockia crucis] gi|133900548|gb|ABO41440.1| NADH dehydrogenase subunit 6 [Salix reticulata] Length = 179 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL +LLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900534|gb|ABO41433.1| NADH dehydrogenase subunit 6 [Poliothyrsis sinensis] Length = 179 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL +LLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|3617814|emb|CAA08932.1| NADH dehydrogenase subunit 6 [Daucus carota] gi|15705129|gb|AAK00521.1| NADH dehydrogenase subunit 6 [Daucus carota] gi|15809215|gb|AAK00513.1| NADH dehydrogenase subunit 6 [Daucus carota] Length = 205 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 100/185 (54%), Gaps = 23/185 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S+ +VV +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FL Sbjct: 7 SSLALVSALMVVRAKNPVHSVSFSIPVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVSFL 66 Query: 72 FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114 F++MM I I EV G +G F I +L + + +MV Sbjct: 67 FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYMV 126 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ + V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQ Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQ 179 D+ ++ Sbjct: 181 DVFRR 185 >gi|107736864|ref|YP_626491.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168915] gi|107736891|ref|YP_626504.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168916] gi|99866575|gb|ABF67623.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168915] gi|99866589|gb|ABF67636.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168916] Length = 204 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 108/202 (53%), Gaps = 25/202 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F+ + S +V++ +P++S+F LI FV +A LFLLLG +FVA++ L++YVGA+ + Sbjct: 1 MLAFVIVGSGIMVISTLSPVHSIFWLIVVFVGSAALFLLLGVDFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRG------------FLGSFFIGILAAELIVCASNFMVFSA 117 FLF+IM+L++ + R G +G+FF +A+ ++ + ++ Sbjct: 61 FLFVIMLLNLTDFLPAFRWGGGEADMTNYAPIGLTIGTFFFSEVASSWLIVGGPYAHRTS 120 Query: 118 -EGEL--------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 GE S + K +N+E +G++LY Y ++ ILL++MIG IVL Sbjct: 121 FWGERGGAWDLASSWFLMKYHNIEALGRILYIACYYLFILASLILLVAMIGGIVLTQEVG 180 Query: 169 RDI----KRQDISKQLESNPDN 186 ++ K+Q+I Q D Sbjct: 181 AEVGPLAKKQEIFLQTSRAYDK 202 >gi|254670966|emb|CBA07654.1| NADH-ubiquinone oxidoreductase, chain J [Neisseria meningitidis alpha153] Length = 223 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 113/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY+F+ + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|133900448|gb|ABO41390.1| NADH dehydrogenase subunit 6 [Erythroxylum coca] Length = 179 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL +LLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEIFFIIDNETIPLLPTQRKTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|109156463|ref|YP_654358.1| NADH dehydrogenase subunit 6 [Mussa angulosa] gi|109156491|ref|YP_654345.1| NADH dehydrogenase subunit 6 [Colpophyllia natans] gi|108744096|gb|ABG02319.1| NADH dehydrogenase subunit 6 [Colpophyllia natans] gi|108744110|gb|ABG02332.1| NADH dehydrogenase subunit 6 [Mussa angulosa] Length = 186 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 103/188 (54%), Gaps = 12/188 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++L F F I+S +VV+ NP+ S+F L+ FVN+A FL L +F+A++ L+VY Sbjct: 1 MEALIFCFF-LSTIVSGIMVVSALNPVLSIFWLVLVFVNSAVFFLWLEVDFLALMFLLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK--------RGFL-GSFFIGILAAELIVCASNFM 113 VGA+ V FLF++M+L++ R++ GFL G FF +A+ + Sbjct: 60 VGAIAVLFLFVVMLLNLTDYPPVFREEVDMTNYMPVGFLIGGFFFSEIASSWSIIFPR-- 117 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 V S + + +N+E +G+VLY ++GF+LL++M+G IVL K+ Sbjct: 118 VESWDLSFPWFLVSYHNIEALGQVLYIPCFCLFFLAGFVLLVAMVGVIVLTQELEPLTKK 177 Query: 174 QDISKQLE 181 QD+ Q+ Sbjct: 178 QDLFIQIN 185 >gi|3914179|sp|O63849|NU6M_SARGL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|3132794|gb|AAC16383.1| NADH dehydrogenase subunit 6 [Sarcophyton glaucum] Length = 185 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 8/183 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MNSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + FLF+IM+ + +P K S F+ I +I + + S + + Sbjct: 60 VGAIAILFLFVIML------IQQPNKIDSQDHSHFLPI-GLSVIFLFYSLLTNSPKYISN 112 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 ++ N+ IG LYT Y + I+ +LL++MIGAI+L + + L S Sbjct: 113 PVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRS 172 Query: 183 NPD 185 D Sbjct: 173 RQD 175 >gi|270267568|ref|YP_003331252.1| NADH dehydrogenase subunit 6 [Dendronephthya gigantea] gi|209887406|gb|ACI95028.1| NADH dehydrogenase subunit 6 [Dendronephthya gigantea] Length = 185 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 24/192 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF + S +++SF+V++ NP+YSVF L+ AFVNAA +F+ L +++ +I ++VY Sbjct: 1 MNSLFI-IISLGIVVASFMVISTPNPVYSVFWLVIAFVNAAVMFISLELDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + FLF+IM++ +P K S F+ + +I S+ + S + + Sbjct: 60 VGAIAILFLFVIMLIQ------QPNKVYSQDHSHFLPV-GLSVIFLFSSLLTNSPKYISN 112 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM---------------LRH 167 ++ N+ IG LYT Y + I+ +LL++MIGAI+L LR Sbjct: 113 PVIGSKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNFYGESLRS 172 Query: 168 RRDIKRQDISKQ 179 R+D+ Q IS++ Sbjct: 173 RQDLFLQ-ISRE 183 >gi|296040751|gb|ADG85343.1| NADH dehydrogenase subunit 6 [Silene noctiflora] Length = 195 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 23/185 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S +VV +NP++SV I F N AGL L LG +F AMI LVVY+GA+ V FL Sbjct: 7 SSLALVSGLMVVRAKNPVHSVLFFILVFCNTAGLLLFLGLDFFAMIFLVVYIGAIAVLFL 66 Query: 72 FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114 F++MM I I EV G +G F I +L + + + Sbjct: 67 FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNETIPLLPTQRTTISLRYTG 126 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 127 YTGK------VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQ 179 D+ ++ Sbjct: 181 DVFRR 185 >gi|254674113|emb|CBA09897.1| NADH-ubiquinone oxidoreductase, chain J [Neisseria meningitidis alpha275] gi|308388471|gb|ADO30791.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha710] gi|325137078|gb|EGC59674.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis M0579] gi|325202920|gb|ADY98374.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis M01-240149] gi|325207281|gb|ADZ02733.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis NZ-05/33] Length = 223 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVYRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|296313737|ref|ZP_06863678.1| NADH dehydrogenase, J subunit [Neisseria polysaccharea ATCC 43768] gi|296839660|gb|EFH23598.1| NADH dehydrogenase, J subunit [Neisseria polysaccharea ATCC 43768] Length = 223 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|261391784|emb|CAX49239.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J; NDH-1, chain J) [Neisseria meningitidis 8013] Length = 223 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|224437350|ref|ZP_03658322.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818] gi|313143813|ref|ZP_07806006.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818] gi|313128844|gb|EFR46461.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818] Length = 173 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 24/181 (13%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S+ FYLFS + I+S +VV+ IY++ +L + +G+F LGAEF+ + +VVY Sbjct: 3 ESISFYLFSTLCIVSFLIVVSSSRIIYAMTALAGGMIFISGIFFTLGAEFIGAVQIVVYG 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--------------ELIVCA 109 G+VI + F +M D +V E RK + +GI E I + Sbjct: 63 GSVIALYAFAMMFFDTSKDVIESRKNEWVVSVLCVGICVVLVIMFGLPLLGNQLETIADS 122 Query: 110 SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +N + F+ E+S N++ IG VL+TQY P E++ +LL++M+ IVL ++ + Sbjct: 123 ANLLDFA---EMS-------NIQKIGYVLFTQYLIPFELAALMLLVAMVAGIVLSVKKEQ 172 Query: 170 D 170 Sbjct: 173 K 173 >gi|225077028|ref|ZP_03720227.1| hypothetical protein NEIFLAOT_02080 [Neisseria flavescens NRL30031/H210] gi|224951585|gb|EEG32794.1| hypothetical protein NEIFLAOT_02080 [Neisseria flavescens NRL30031/H210] gi|325129048|gb|EGC51898.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis N1568] Length = 223 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|161870813|ref|YP_001599986.1| NADH dehydrogenase I chain J [Neisseria meningitidis 053442] gi|161596366|gb|ABX74026.1| NADH dehydrogenase I chain J [Neisseria meningitidis 053442] Length = 223 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSTILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ +N F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTNLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|57014000|ref|YP_173471.1| NADH dehydrogenase subunit 6 [Nicotiana tabacum] Length = 228 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV LI F N +GL LLLG +F AMI VVY+GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFLIPVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM I I EV G +G F I +L + + + V++ Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLLFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|254805705|ref|YP_003083926.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha14] gi|254669247|emb|CBA08121.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha14] Length = 223 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|255067293|ref|ZP_05319148.1| NADH dehydrogenase, J subunit [Neisseria sicca ATCC 29256] gi|255048444|gb|EET43908.1| NADH dehydrogenase, J subunit [Neisseria sicca ATCC 29256] Length = 223 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 113/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT+Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDVPADYNNIRDLGSRIYTEYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|261599936|dbj|BAI45219.1| NADH dehydrogenase [Dianthus japonicus] Length = 205 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFLVVYIGAIAVSFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM I I EV G +G F I +L + + + V++ Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|300775182|ref|ZP_07085044.1| NADH-quinone oxidoreductase subunit J [Chryseobacterium gleum ATCC 35910] gi|300505922|gb|EFK37058.1| NADH-quinone oxidoreductase subunit J [Chryseobacterium gleum ATCC 35910] Length = 165 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 102/176 (57%), Gaps = 31/176 (17%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F+L +F+A+ S+ V +NP+Y++ SLI + AG+++LL A+F+A+I ++VY Sbjct: 1 MDQFLFFLVAFLAVASAVYFVFAKNPLYAILSLIVTMFSIAGMYILLNAQFLAIIQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FL+I+MML+++ A+ KK L F+G+ A L++ G L Sbjct: 61 AGAIMVLFLYILMMLNLN--KADESKKNNTLK--FVGVFTAGLLLI----------GVLG 106 Query: 123 RLVFKG--------NNVE-------NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 VF+G NV+ N+G++L+ +Y P E++ ++L ++GA+++ Sbjct: 107 --VFRGIQDNHIVVENVDRGVGLTKNLGRLLFNEYVLPFELASILILAGIVGAVLI 160 >gi|332883535|gb|EGK03818.1| hypothetical protein HMPREF9456_01885 [Dysgonomonas mossii DSM 22836] Length = 167 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 13/173 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ FY+ + + + + L V +NPI+S +I F + +G FLLL A F+++I +VVY Sbjct: 1 MITIIFYILATITLGTGLLTVLSKNPIHSAVYMIICFFSISGHFLLLNALFLSVINIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK-----RGFLGSFFIGI-LAAELIVCASNFMVFS 116 GA++V LF +M++++ E EP+KK + S +GI L A L+ + Sbjct: 61 AGAIMVLLLFTLMLMNLS-ESHEPKKKVISRVAATISSCLMGIVLLAALLKATPVIETYK 119 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 AEG L ++ N+ IG+VL +Y P E + +L+ +MIGA+++ + ++ Sbjct: 120 AEG----LDYQSVNI--IGQVLLDEYLVPFEFAAILLITAMIGAVLISKKEKK 166 >gi|150375781|ref|YP_001312377.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium medicae WSM419] gi|150030328|gb|ABR62444.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium medicae WSM419] Length = 166 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 9/165 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ ++++++ +V RNP++S +L+ F+ + +F++LGA +A+I + VY Sbjct: 1 MHQGFFLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG----FLGSFFIGILAAELIVCASNFMVFSAE 118 VGA++V FLF+IMM+D+ V + G +G L++ + F+ Sbjct: 61 VGAIMVLFLFVIMMVDVREAVLQRFMPGGNLPALALLLLLGTEMVVLVLWSDRFIESPPV 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 E G+ + ++ K L++ Y P EI+ ILL +++GAIVL Sbjct: 121 AERG-----GDAIRDLSKTLFSDYLLPFEIASVILLAALVGAIVL 160 >gi|148244398|ref|YP_001219092.1| NADH dehydrogenase I chain J [Candidatus Vesicomyosocius okutanii HA] gi|146326225|dbj|BAF61368.1| NADH dehydrogenase I chain J [Candidatus Vesicomyosocius okutanii HA] Length = 203 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 26/207 (12%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+FSF ++SS ++ RN +V L+ AF +AA +++LL AEF+A+I ++ Sbjct: 1 MGFEQIIFYIFSFWFVVSSLAMIFSRNAAKAVLFLVLAFFSAASIWILLEAEFLAIILIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC-----------A 109 VYVGAV+V FLF+I ML+ID + R F G L LIV Sbjct: 61 VYVGAVMVLFLFVIKMLNIDKSTIKAR---------FTGYLPLRLIVAIIIIIEMSLVLG 111 Query: 110 SN---FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 SN VFS S +N+ + +YT Y YP E++ +LL+++I AI L+ R Sbjct: 112 SNQFGLDVFSVPERHSE---DYSNITVLAMQIYTTYVYPFELAAVLLLIAIIAAITLVHR 168 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKV 193 + K+Q IS+Q+ + + +V + Sbjct: 169 NDTSRKKQSISEQVNVQAKDRVRLVSI 195 >gi|325143092|gb|EGC65439.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis 961-5945] gi|325143162|gb|EGC65508.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis 961-5945] gi|325197537|gb|ADY92993.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis G2136] Length = 223 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|325131603|gb|EGC54310.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis M6190] gi|325139142|gb|EGC61688.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis ES14902] gi|325203368|gb|ADY98821.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis M01-240355] Length = 223 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|332296564|ref|YP_004438487.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermodesulfobium narugense DSM 14796] gi|332179667|gb|AEE15356.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermodesulfobium narugense DSM 14796] Length = 171 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 102/169 (60%), Gaps = 11/169 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + LFF F+ +I+ S +V+T +N I++V + FV+ +G++L L AEF AMI ++ Sbjct: 1 MSVPVLFFSYFALASIVISLIVITRKNYIHAVLWTLLLFVHISGIYLFLNAEFFAMIQMI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE-----VAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VY GA++V +F+IM+L++ E V+ + FL +G+LA IV ++++ Sbjct: 61 VYAGAILVMLIFVIMLLNVKHEDHLSDVSSLSIPKAFLVFCVLGVLA---IVLQTSYL-- 115 Query: 116 SAEGELS-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + G+ S LV K ++ + +G++ Y++ PL I G +L + MI AIVL Sbjct: 116 NTTGKFSIDLVNKVSDAKLLGQIFYSEANLPLIIMGVVLFVPMIAAIVL 164 >gi|133900436|gb|ABO41384.1| NADH dehydrogenase subunit 6 [Drypetes roxburghii] Length = 178 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F +G+ LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFCETSGVLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI+ F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|288817726|ref|YP_003432073.1| NADH dehydrogenase chain J [Hydrogenobacter thermophilus TK-6] gi|288787125|dbj|BAI68872.1| NADH dehydrogenase chain J [Hydrogenobacter thermophilus TK-6] gi|308751325|gb|ADO44808.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobacter thermophilus TK-6] Length = 177 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 101/175 (57%), Gaps = 5/175 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F LFS +A++SS VV + NP+Y + SL+ + + AG+F + GAE V + L++Y Sbjct: 2 IQWITFLLFSLLAVVSSLGVVLLPNPVYVILSLLSSLIAIAGVFFVAGAELVGALQLLIY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120 AV VF++F++ + + + + R G L + +L E+++ S + S +G+ Sbjct: 62 AVAVTVFYVFVLTAVPWEKALKKDSHYRVEGVLSFPILLLLYFEILIVFSLGVSASPKGQ 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + L K N E IG +L+++Y + E+ +LL+ MIGA+++ R++ + D Sbjct: 122 IKELSKKFGNTEVIGSILFSKYFFAFELVSLVLLIGMIGAVII---GRKEAQTYD 173 >gi|304389076|ref|ZP_07371120.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis ATCC 13091] gi|304336949|gb|EFM03139.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis ATCC 13091] Length = 223 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ +I L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVASIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|109156446|ref|YP_654278.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia bipinnata] gi|108513891|gb|ABF93174.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia bipinnata] Length = 185 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 8/183 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MNSLFI-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAIMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + FLF+IM+ + +P K S F+ + +I + + S+ + Sbjct: 60 VGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFLFYSLLTNSSRYISN 112 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 ++ N+ IG LYT Y + I+ +LL++MIGAI+L + + L S Sbjct: 113 PVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRS 172 Query: 183 NPD 185 D Sbjct: 173 RQD 175 >gi|241760703|ref|ZP_04758795.1| NADH dehydrogenase i chain j [Neisseria flavescens SK114] gi|241318884|gb|EER55410.1| NADH dehydrogenase i chain j [Neisseria flavescens SK114] Length = 223 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|261364358|ref|ZP_05977241.1| NADH dehydrogenase, J subunit [Neisseria mucosa ATCC 25996] gi|288567622|gb|EFC89182.1| NADH dehydrogenase, J subunit [Neisseria mucosa ATCC 25996] Length = 223 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|56791576|gb|AAW30326.1| NADH dehydrogenase subunit 6 [Zamia integrifolia] Length = 181 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 S A++ +VV NP++ V I F N +GL LL G + AMI+ VV++GA+ F Sbjct: 1 LSSPALVPGSMVVRAENPVHPVSFPIPVFRNTSGLLLLSGPDLSAMISPVVHIGAIAALF 60 Query: 71 LFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-----AEGELSRL 124 ++MML+I I E+ E + + IL E+ + + N + S L Sbjct: 61 SSVVMMLNIKIAEIHEKVSRYSPVSGIIGPILRWEMFLISDNDHIPSLPTYIGTTSLRYT 120 Query: 125 VFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 V G N E +G +L+T Y+ +S + L++MIGAIVL + +KRQD+ Sbjct: 121 VHAGEIQSWTNSETLGNLLHTYYSVRFLVSSPVPLVAMIGAIVLTMHRTTKVKRQDV 177 >gi|155029063|emb|CAO85827.1| NADH dehydrogenase subunit 6 [Helianthus annuus] Length = 309 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 99/185 (53%), Gaps = 23/185 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FL Sbjct: 7 SSLALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFL 66 Query: 72 FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114 F++MM I I EV G +G F I +L + + +MV Sbjct: 67 FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYMV 126 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ + V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQ Sbjct: 127 YAGK------VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQ 179 D+ ++ Sbjct: 181 DVFRR 185 >gi|146298997|ref|YP_001193588.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Flavobacterium johnsoniae UW101] gi|146153415|gb|ABQ04269.1| NADH dehydrogenase subunit J [Flavobacterium johnsoniae UW101] Length = 179 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 100/168 (59%), Gaps = 11/168 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + + +I++FL + RNPI+S L+ F + AG +LLL ++F+A++ ++VY GA++ Sbjct: 17 FCILALITVITAFLTIFSRNPIHSAIYLVICFFSIAGHYLLLNSQFLAVVHIIVYSGAIM 76 Query: 68 VFFLFIIMMLDID--IEVAEPRKKR-GFLGSFFIGILAAELIVCASNFMV--FSAEGELS 122 + FLF IM+++++ +V PR R G + SF + ++ I S +V + + GE Sbjct: 77 ILFLFTIMLMNLNEQKDVHRPRITRLGAIVSFCLIVIVLIAIFINSKPIVGDYDSTGE-- 134 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 ++E +GK+L +Y P E + +LL++MIG ++L + + + Sbjct: 135 ----DFQSIEVLGKILLNEYMVPFEFASILLLVAMIGTVLLSKKEKLN 178 >gi|218514978|ref|ZP_03511818.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli 8C-3] Length = 166 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 97/169 (57%), Gaps = 5/169 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LFS +++I++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFSAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ E R G G+ +L L V +++S + Sbjct: 61 VGAIMVLFLFVIMMIDVR-EAVLQRFLPG--GNLPALVLVVLLGVEMLVLVLWSDRFSVI 117 Query: 123 RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V G+ + + L+ Y P EI+ ILL++++GAIVL + + Sbjct: 118 EPVAMRGGDQIRQLSTTLFADYLLPFEIASVILLVALVGAIVLARKEQE 166 >gi|166895624|ref|YP_001661418.1| NADH dehydrogenase subunit 6 [Cycas taitungensis] gi|166706956|dbj|BAF98420.1| NADH dehydrogenase subunit 6 [Cycas taitungensis] Length = 201 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 11/176 (6%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S A++ +VV NP++ V I F N +GL +L G + AMI+ VV++GA+ V F Sbjct: 7 SSPALVPGLMVVRAENPVHPVSFPIPVFRNTSGLLILSGPDLSAMISPVVHIGAIAVLFS 66 Query: 72 FIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-----AEGELSRLV 125 ++MML+I I E+ E + + IL E+ + N + S L V Sbjct: 67 SVVMMLNIQIAEIHEKVSRYSPVSGLIGPILRWEMFLILDNDHIPSLPTYIGTTSLRYTV 126 Query: 126 FKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G N E +G +L+T Y+ +S + L++MIGAIVL + +KRQD+ Sbjct: 127 HAGEIQSWTNSETLGNLLHTYYSVRFLVSSPVPLVAMIGAIVLTMHRTTKVKRQDV 182 >gi|322436011|ref|YP_004218223.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidobacterium sp. MP5ACTX9] gi|321163738|gb|ADW69443.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidobacterium sp. MP5ACTX9] Length = 174 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 10/174 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ F +F+ +AI + ++ R+PI S SL+ ++ A L+ LGAEF+A ++VY Sbjct: 1 MQLALFIIFAALAIAGALNLLLQRHPINSALSLVVVMMSLAVLYWTLGAEFLAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F++M+L+ E + G ++ G+ A + C +F+ + + Sbjct: 61 AGAIMVLFVFVVMLLN----AGEEERTTGSRAAYLAGVPGATAVFCLLSFVFLTESKAIG 116 Query: 123 RLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G NN+ I +VL+T+ P E++ ++L++++GA+VL + + Sbjct: 117 NATLGGMLSGGVNNIAEISQVLFTRLLLPFEVTSVLILVAILGAVVLARKTEPE 170 >gi|109156421|ref|YP_654308.1| NADH dehydrogenase subunit 6 [Ricordea florida] gi|108515291|gb|ABF93388.1| NADH dehydrogenase subunit 6 [Ricordea florida] Length = 201 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 109/204 (53%), Gaps = 30/204 (14%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F+ + S +V++ NP++S+F LI FV +A LFLLLG +FVA++ L++YVGA+ + Sbjct: 1 MLAFVIVGSGIMVISTLNPVHSIFWLIVVFVGSAVLFLLLGIDFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCA------ 109 FLF+IM+L++ D P + G +G FF +A+ ++ Sbjct: 61 FLFVIMLLNLADF---PPAFRWGGEADMTNYAPIGLIIGVFFFSEVASSWLIVGGPYAHR 117 Query: 110 SNFMVFSAEG---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 ++F V E S + K +N+E +G++LY Y ++ ILL++MIG IVL Sbjct: 118 ASFWVEVGEAWDLACSWFLMKYHNIEALGRILYIACYYLFILASLILLVAMIGGIVLTQE 177 Query: 167 HRRDI----KRQDISKQLESNPDN 186 ++ K+Q+I Q +N Sbjct: 178 VGSEVGPMAKKQEIFFQTSRIYEN 201 >gi|325130979|gb|EGC53706.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis OX99.30304] gi|325205337|gb|ADZ00790.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis M04-240196] Length = 223 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ +I L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVASIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|196228500|ref|ZP_03127367.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chthoniobacter flavus Ellin428] gi|196227903|gb|EDY22406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chthoniobacter flavus Ellin428] Length = 170 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 16/178 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FYLF+ + + VV RNP+ S L+ +F+ A LF+ L A F+A+I ++VY Sbjct: 1 MSPILFYLFAALTVCFGIAVVANRNPVASALCLVVSFLGLAALFVGLDAYFIAVIQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSAEG 119 GAV+V FLFIIM+LD+ AE R+K G++A I A ++V +SA Sbjct: 61 AGAVMVLFLFIIMLLDLK---AETRRKPNLPAYVGGGLVALAFI--AQLWLVLERYSAAH 115 Query: 120 ELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + ++ ++V N+G L++ + P ++ G ++L++ IG +VL +R++K Sbjct: 116 QPFPTMWASEGKSIDDVTNVGTTLFSVHNLPFQVIGVLILVATIGVVVL---SKRELK 170 >gi|313669275|ref|YP_004049559.1| NADH dehydrogenase I chain J [Neisseria lactamica ST-640] gi|313006737|emb|CBN88207.1| NADH dehydrogenase I chain J [Neisseria lactamica 020-06] Length = 223 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|261400481|ref|ZP_05986606.1| NADH dehydrogenase, J subunit [Neisseria lactamica ATCC 23970] gi|269209740|gb|EEZ76195.1| NADH dehydrogenase, J subunit [Neisseria lactamica ATCC 23970] Length = 223 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|56791572|gb|AAW30324.1| NADH dehydrogenase subunit 6 [Piper betle] Length = 177 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 93/178 (52%), Gaps = 21/178 (11%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ V FLF++ Sbjct: 5 ALVSGLMVVRAKNPVHSVSFPILVFCDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVV 64 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-----------GELSR 123 MM +I I R S IG LI F +F E L Sbjct: 65 MMFNIQIAETHEEVLRYLPVSGIIG-----LIFWWEMFFIFDNETIPLLPTHRKTTSLRY 119 Query: 124 LVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 V+ G N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ Sbjct: 120 TVYAGKVRSWTNLETLGNLLYTYYSVRFLVPSLILLVAMIGAIVLTMHRTSKVKRQDV 177 >gi|298245620|ref|ZP_06969426.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter racemifer DSM 44963] gi|297553101|gb|EFH86966.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter racemifer DSM 44963] Length = 175 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 107/189 (56%), Gaps = 28/189 (14%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +L F++ + + ++++ LVV++RN ++S +L F FV A G+++LL AEF+A++ ++ Sbjct: 1 MDFAALMFWILATILVVAALLVVSLRNIVHSAIALFFVFVMAGGIYILLNAEFIAIVQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDI-DIEVAEPRKKRGFL---------GSFFIGILAAELIVCAS 110 +Y GAV + LF +M+ I ++ P + ++ GS G+ + L + S Sbjct: 61 IYAGAVTILILFALMLTRIGGLQRTNPANRLWWIAAIISAFVGGSILYGLFNSTLAI--S 118 Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLY--TQYAY--PLEISGFILLLSMIGAIVLMLR 166 N ++ G +L NNV IG++LY T Y+Y P EI+ +LL++++GAIV Sbjct: 119 N----TSTGGGHQLPAHINNVVAIGQLLYSPTSYSYILPFEIASVVLLVAIVGAIV---- 170 Query: 167 HRRDIKRQD 175 I R+D Sbjct: 171 ----IGRED 175 >gi|261378530|ref|ZP_05983103.1| NADH dehydrogenase, J subunit [Neisseria cinerea ATCC 14685] gi|269145080|gb|EEZ71498.1| NADH dehydrogenase, J subunit [Neisseria cinerea ATCC 14685] Length = 223 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|71733150|ref|YP_271954.1| NADH dehydrogenase subunit 6 [Montastraea faveolata] gi|71733164|ref|YP_271941.1| NADH dehydrogenase subunit 6 [Montastraea franksi] gi|71733178|ref|YP_271928.1| NADH dehydrogenase subunit 6 [Montastraea annularis] gi|71043518|dbj|BAE16181.1| NADH dehydrogenase subunit 6 [Montastraea annularis] gi|71043532|dbj|BAE16194.1| NADH dehydrogenase subunit 6 [Montastraea annularis] gi|71043546|dbj|BAE16207.1| NADH dehydrogenase subunit 6 [Montastraea franksi] gi|71043560|dbj|BAE16220.1| NADH dehydrogenase subunit 6 [Montastraea franksi] gi|71043574|dbj|BAE16233.1| NADH dehydrogenase subunit 6 [Montastraea faveolata] gi|71043588|dbj|BAE16246.1| NADH dehydrogenase subunit 6 [Montastraea faveolata] Length = 186 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 12/188 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++L F F I+S +VV+ NP+ S+F L+ FVN+A FL L +F+A++ L+VY Sbjct: 1 MEALIFCFF-LSTIVSGIMVVSALNPVLSIFWLVLVFVNSAVFFLWLEVDFLALMFLLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK--------RGFL-GSFFIGILAAELIVCASNFM 113 VGA+ V FLF++M+L++ R++ GFL G FF +A+ + Sbjct: 60 VGAIAVLFLFVVMLLNLTDYPPVFREEVDMTNYMPVGFLIGGFFFSEIASSWSIIFPR-- 117 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 V S + + +N+E +G+VLY ++GF LL++M+G IVL K+ Sbjct: 118 VESWDLSFPWFLVSYHNIEALGQVLYISCFCLFFLAGFALLVAMVGVIVLTQELEPLTKK 177 Query: 174 QDISKQLE 181 QD+ Q+ Sbjct: 178 QDLFIQIN 185 >gi|200004020|ref|YP_002221355.1| NADH dehydrogenase subunit 6 [Blastocystis sp. DMP/02-328] gi|156617367|gb|ABU87587.1| NADH dehydrogenase subunit 6 [Blastocystis sp. BT-1] gi|156617370|gb|ABU87589.1| NADH dehydrogenase subunit 6 [Blastocystis sp. DMP/02-328] Length = 201 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 101/189 (53%), Gaps = 13/189 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 IIS F+ ++V N +Y+V LI AF + + LL +++A++ +++YVGA+ + FLF++M Sbjct: 14 IISVFMTISVNNAVYAVLFLILAFFSTMCILFLLNIDYLALLFILIYVGAITILFLFVVM 73 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-----------EGELSRL 124 ML I I K F+ ++ ++ +F + S+L Sbjct: 74 MLKIKINDKNTTKFLSFINIIISCLIIYNVLCNVQILNIFLPTTTTALETLTYQNWFSKL 133 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDISKQLESN 183 + +N++ +G+VL+T Y + ++GF+LL+ MI AI+L R I+R Q + +QL Sbjct: 134 -YYVDNIKMLGQVLFTTYYFYFILAGFVLLVGMISAILLSKESNRTIRRYQLVYQQLSRE 192 Query: 184 PDNSIVMVK 192 N++ +V Sbjct: 193 VSNAVFLVH 201 >gi|319638826|ref|ZP_07993584.1| NADH dehydrogenase subunit I J [Neisseria mucosa C102] gi|317399730|gb|EFV80393.1| NADH dehydrogenase subunit I J [Neisseria mucosa C102] Length = 223 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEAMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTFNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|107736213|ref|YP_626509.1| NADH dehydrogenase subunit 6 [Briareum asbestinum] gi|100913613|gb|ABF69700.1| NADH dehydrogenase subunit 6 [Briareum asbestinum] Length = 185 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 8/161 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MNSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + FLF+IM+ + +P K S F+ + +I + S + + Sbjct: 60 VGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFLFYGLLTNSPKYISN 112 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++ N+ IG LYT Y + I+ +LL++MIGAI+L Sbjct: 113 PVIGSKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILL 153 >gi|261379571|ref|ZP_05984144.1| NADH dehydrogenase, J subunit [Neisseria subflava NJ9703] gi|284798045|gb|EFC53392.1| NADH dehydrogenase, J subunit [Neisseria subflava NJ9703] Length = 223 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLDAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|190893206|ref|YP_001979748.1| NADH-ubiquinone oxidoreductase, chain J [Rhizobium etli CIAT 652] gi|190698485|gb|ACE92570.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli CIAT 652] Length = 166 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 5/169 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LFS +++I++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFSAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ E R G G+ +L L V +++S + Sbjct: 61 VGAIMVLFLFVIMMIDVR-EAVLQRFLPG--GNLPALVLVVLLGVEMLVLVLWSDRFSVI 117 Query: 123 RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V G+ + + L+ Y P EI+ ILL +++GAIVL + + Sbjct: 118 EPVAMRGGDQIRQLSTTLFADYLLPFEIASVILLAALVGAIVLARKEQE 166 >gi|289548977|ref|YP_003473965.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis albus DSM 14484] gi|289182594|gb|ADC89838.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis albus DSM 14484] Length = 163 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 96/162 (59%), Gaps = 5/162 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + S I+S V+ ++NP++ V S + + AG+FL LGAE +A + L++Y Sbjct: 1 MEWVIFGILSLWLILSVLGVLFLKNPVHVVLSFLSVVLATAGIFLHLGAELLAGLQLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGEL 121 A++VF++ ++ + + + ++ G +L F + + L+V A +++ +S Sbjct: 61 AVAIVVFYVLVVTTIPWE----KVKRFEGIYLREFLLAVPFFLLLVVALSYLAWSGSFAT 116 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G+NV ++GKVL+T Y +P E++ ILL++M+GAI+L Sbjct: 117 KGFPLSGDNVRDVGKVLFTSYLFPFELASVILLIAMVGAILL 158 >gi|62161342|ref|YP_214970.1| NADH dehydrogenase subunit 6 [Montipora cactus] gi|58220707|gb|AAW67970.1| NADH dehydrogenase subunit 6 [Montipora cactus] Length = 197 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 28/196 (14%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F + S +V++ NPI+S+F LI F+ +A FL LG FVA++ L++YVGA+ + Sbjct: 1 MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFM--V 114 FLF+IM+L++ P + G +G+FF +A+ ++ + V Sbjct: 61 FLFVIMLLNLT--DFPPAFRLGGEADMTNYIPIGLVVGTFFFSEVASSWLIIGGPYTPRV 118 Query: 115 F-------SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 F + + L + K N+E +G++LY Y ++ FILL++M+GAIVL Sbjct: 119 FLGAEIGRAWDLALPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLTQEI 178 Query: 168 RRDI----KRQDISKQ 179 +I KRQDI Q Sbjct: 179 GSEIGPVVKRQDIFFQ 194 >gi|309379793|emb|CBX21569.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 223 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|109156406|ref|YP_654397.1| NADH dehydrogenase subunit 6 [Porites porites] gi|108744152|gb|ABG02371.1| NADH dehydrogenase subunit 6 [Porites porites] Length = 197 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 30/189 (15%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S +V++ NPI+S+F L+ F +A FL LG FVA++ L++YVGA+ + FLF+IM+L Sbjct: 9 SGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAILFLFVIMLL 68 Query: 78 DI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFMVFSAEG-ELS 122 ++ D P + G +G+FF +A+ ++ ++ + G E+S Sbjct: 69 NLTDF---PPAFRLGGEADMTNYVPIGLLIGTFFFSEVASSWLIIGGSYTHRAFFGAEIS 125 Query: 123 R--------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---- 170 R + K N+E +G++LY Y ++ F+LL++MIGAIVL + Sbjct: 126 RAWDLATPWFLMKYQNMEALGRILYITCYYLFILASFVLLVAMIGAIVLTQEVGSEVGPL 185 Query: 171 IKRQDISKQ 179 +KRQDI Q Sbjct: 186 VKRQDIFFQ 194 >gi|298370370|ref|ZP_06981686.1| NADH dehydrogenase (ubiquinone), J subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281830|gb|EFI23319.1| NADH dehydrogenase (ubiquinone), J subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 223 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELASVLLLLGMVAAIALVHRKTFNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|58578623|ref|YP_203313.1| NADH dehydrogenase subunit 6 [Rhizopus oryzae] gi|57339010|gb|AAW49480.1| NADH dehydrogenase subunit 6 [Rhizopus oryzae] Length = 214 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 46/215 (21%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ L F +++S LV+T RNP+ SV LI F+N A +LLG F+ + L+VY Sbjct: 1 MNAILLDLLVFGSVLSGILVITSRNPVVSVLFLISVFINVACYLILLGINFIGLAYLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI--------EVAEPRKKRGFLGSFFI-----------GILAA 103 VGA+ + FLF+IMML+I + + + P LG+ F+ G+ + Sbjct: 61 VGAIAILFLFVIMMLNIKLVELQDSSEDYSNPYPLAFVLGTLFVSGLSLTNKNIWGVHSE 120 Query: 104 ELIVCAS----------------NFMVFSAEGELSRLVFKGNNVEN----------IGKV 137 + + +S N + F + L L +N +N IG+V Sbjct: 121 QSLFGSSNGSGIKLDLSGLFDWVNLLSFKSN-TLETLTINHSNWDNVFVSMDQINSIGQV 179 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 LYT +A L ++ ILLL+M+G I+L L + + Sbjct: 180 LYTSHALFLIVASMILLLAMVGPIILCLNPTKRVS 214 >gi|257852736|gb|ACV71380.1| NADH dehydrogenase subunit 6 [Prunus caroliniana] Length = 178 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL +LLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPIPVFRDTSGLLILLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVQSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|299138533|ref|ZP_07031712.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidobacterium sp. MP5ACTX8] gi|298599779|gb|EFI55938.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidobacterium sp. MP5ACTX8] Length = 168 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 10/167 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ+ F +F +A++ + ++ R+PI S SLI ++ A L+ LGAEF+A ++VY Sbjct: 1 MQTALFIIFGLLAVLGALNLLFQRHPINSALSLIVVMMSLAVLYWSLGAEFLAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IM+L+ E + G ++ GI A I C F+ S + +L Sbjct: 61 SGAIMVLFVFVIMLLN----AGEEERTHGSQIAYIAGIPGAAAIFCLLTFVFLSEKKQLG 116 Query: 123 RLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G +N+ I L+T P E++ ++L++++GA+VL Sbjct: 117 TTQLGGYLTSAVSNITEISHTLFTSLLLPFEVTSILILVAILGAVVL 163 >gi|295311651|ref|YP_003587236.1| NADH dehydrogenase subunit 6 [Citrullus lanatus] gi|259156779|gb|ACV96641.1| NADH dehydrogenase subunit 6 [Citrullus lanatus] Length = 205 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM I I EV G +G F I +L + + + V++ Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|240014993|ref|ZP_04721906.1| NuoJ [Neisseria gonorrhoeae DGI18] gi|240116593|ref|ZP_04730655.1| NuoJ [Neisseria gonorrhoeae PID18] gi|240122062|ref|ZP_04735024.1| NuoJ [Neisseria gonorrhoeae PID24-1] gi|268602262|ref|ZP_06136429.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID18] gi|268586393|gb|EEZ51069.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID18] Length = 223 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 111/203 (54%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSVILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|54606785|dbj|BAD66808.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris] Length = 205 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM I I EV G +G F I +L + + + V++ Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|91203928|emb|CAJ71581.1| similar to NADH dehydrogenase I subunit J [Candidatus Kuenenia stuttgartiensis] Length = 169 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 99/172 (57%), Gaps = 9/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+ + +++++ ++ +NPIY L+F+F+N A L++LL A+F+A + ++VY Sbjct: 1 MEPYLFYVMAATSVVAALYLIFEKNPIYCALYLVFSFLNIAVLYVLLEAQFIAAVQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IM+L + +E ++K G ++ +++ + S + Sbjct: 61 TGAIMVLFLFVIMLLMTN---SEQKQKDGLPFQRIPAMVLGLVLLIIMGLTIKSKLFQGR 117 Query: 123 RLVFKGNNVENI------GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 ++ VE+I GK+L+T Y P E++ +L +++IGAI+L R + Sbjct: 118 EGIYTSAKVESIGHTQLVGKLLFTDYLLPFEMTSVLLFVAVIGAIILAKRKQ 169 >gi|59802063|ref|YP_208775.1| hypothetical protein NGO1742 [Neisseria gonorrhoeae FA 1090] gi|194099638|ref|YP_002002769.1| NuoJ [Neisseria gonorrhoeae NCCP11945] gi|239999834|ref|ZP_04719758.1| NuoJ [Neisseria gonorrhoeae 35/02] gi|240017441|ref|ZP_04723981.1| NuoJ [Neisseria gonorrhoeae FA6140] gi|240081580|ref|ZP_04726123.1| NuoJ [Neisseria gonorrhoeae FA19] gi|240113862|ref|ZP_04728352.1| NuoJ [Neisseria gonorrhoeae MS11] gi|240118817|ref|ZP_04732879.1| NuoJ [Neisseria gonorrhoeae PID1] gi|240124356|ref|ZP_04737312.1| NuoJ [Neisseria gonorrhoeae PID332] gi|240126568|ref|ZP_04739454.1| NuoJ [Neisseria gonorrhoeae SK-92-679] gi|240129033|ref|ZP_04741694.1| NuoJ [Neisseria gonorrhoeae SK-93-1035] gi|254494617|ref|ZP_05107788.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 1291] gi|260439646|ref|ZP_05793462.1| NuoJ [Neisseria gonorrhoeae DGI2] gi|268595644|ref|ZP_06129811.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 35/02] gi|268597676|ref|ZP_06131843.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae FA19] gi|268599928|ref|ZP_06134095.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae MS11] gi|268604528|ref|ZP_06138695.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID1] gi|268682983|ref|ZP_06149845.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID332] gi|268685148|ref|ZP_06152010.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-92-679] gi|268687411|ref|ZP_06154273.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-93-1035] gi|291042887|ref|ZP_06568628.1| NADH-quinone oxidoreductase subunit J [Neisseria gonorrhoeae DGI2] gi|293398103|ref|ZP_06642308.1| NADH dehydrogenase I subunit J [Neisseria gonorrhoeae F62] gi|59718958|gb|AAW90363.1| putative NADH dehydrogenase I chain J [Neisseria gonorrhoeae FA 1090] gi|193934928|gb|ACF30752.1| NuoJ [Neisseria gonorrhoeae NCCP11945] gi|226513657|gb|EEH63002.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 1291] gi|268549033|gb|EEZ44451.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 35/02] gi|268551464|gb|EEZ46483.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae FA19] gi|268584059|gb|EEZ48735.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae MS11] gi|268588659|gb|EEZ53335.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID1] gi|268623267|gb|EEZ55667.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID332] gi|268625432|gb|EEZ57832.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-92-679] gi|268627695|gb|EEZ60095.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-93-1035] gi|291013321|gb|EFE05287.1| NADH-quinone oxidoreductase subunit J [Neisseria gonorrhoeae DGI2] gi|291611366|gb|EFF40436.1| NADH dehydrogenase I subunit J [Neisseria gonorrhoeae F62] gi|317165123|gb|ADV08664.1| hypothetical protein NGTW08_1707 [Neisseria gonorrhoeae TCDC-NG08107] Length = 223 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 111/203 (54%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSVILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMD 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|109156534|ref|YP_654295.1| NADH dehydrogenase subunit 6 [Rhodactis sp. CASIZ 171755] gi|108515262|gb|ABF93375.1| NADH dehydrogenase subunit 6 [Rhodactis sp. CASIZ 171755] Length = 203 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 109/203 (53%), Gaps = 28/203 (13%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F+ + S +V++ +P++S+F LI FV +A LFLLLG +FVA++ L++YVGA+ + Sbjct: 1 MLAFVIVGSGIMVISTLSPVHSIFWLIVVFVGSAVLFLLLGIDFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-------------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 FLF+IM+L++ D+ P +G+FF +A+ ++ + + Sbjct: 61 FLFVIMLLNLTDFPPAFRWGGEADMTNYAPIGLT--IGTFFFSEVASSWLIVGGPYAHRT 118 Query: 117 A-EGEL--------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + GE S + K +N+E +G++LY Y ++ FILL++MIG +VL Sbjct: 119 SFWGERGGAWDLASSWFLMKYHNIEALGRILYIACYYLFILASFILLVAMIGGMVLTQEV 178 Query: 168 RRDI----KRQDISKQLESNPDN 186 ++ K+Q+I Q D Sbjct: 179 GAEVGPLAKKQEIFLQTSRAYDK 201 >gi|121634123|ref|YP_974368.1| NADH dehydrogenase I chain J [Neisseria meningitidis FAM18] gi|120865829|emb|CAM09561.1| NADH dehydrogenase I chain J [Neisseria meningitidis FAM18] Length = 223 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVF 115 VYVGAV+V FLF++MML+IDIE R G +G+ L L+ ++ F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR + Sbjct: 121 ---GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRME 177 Query: 176 ISKQLESNPDNS-IVMVKVKSGK 197 + Q++ D + +VK+++ K Sbjct: 178 PADQVKVRADQGRMRLVKMEAVK 200 >gi|218463312|ref|ZP_03503403.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli Kim 5] Length = 166 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 97/170 (57%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ ++++++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFATVSVVTALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ E R G G+ +L L + +++S + Sbjct: 61 VGAIMVLFLFVIMMIDVR-EAVLQRFLPG--GNLLALVLVVVLGLEMLVLVLWSDRFSVI 117 Query: 123 RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 V G+ + + L+ Y P EI+ ILL +++GAIVL R +D Sbjct: 118 EPVAMRGGDQIRQLSTTLFADYLLPFEIASVILLAALVGAIVLA-RKEQD 166 >gi|110225687|ref|YP_665692.1| NADH dehydrogenase subunit 6 [Mesostigma viride] gi|17222558|gb|AAL36731.1|AF353999_11 NADH dehydrogenase subunit 6 [Mesostigma viride] Length = 219 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 52/216 (24%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FYLFS +A++S+ +V+ +NP+YSV LI F N L +L G +F+AM+ +VVYVGA Sbjct: 1 MLFYLFSSLALVSAIIVIRTKNPVYSVLFLILVFANVTALLILEGLDFLAMVFIVVYVGA 60 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKRGFLG------SFF--IGILAAELIVCASNFMVFS 116 + V FLF++MML+I++ E++E + +G S F + I+ +ELI F +F Sbjct: 61 IAVLFLFVVMMLNINLAEMSENMVRYLPVGGLILILSLFQILLIVESELIPPLFPFKIFQ 120 Query: 117 AEGELSRL---------VFKGN----------------------------------NVEN 133 + LS K N N++ Sbjct: 121 TDLLLSWFSNLQESLNAPLKENLTILYNIAPWHFVEPNLRPVSGINCFLMSQQDISNIQA 180 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 IG VL++ + + L + G ILL++MIG I+L + + Sbjct: 181 IGLVLFSTHWFYLMLGGLILLVAMIGTILLTMDKNK 216 >gi|223937085|ref|ZP_03628993.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium Ellin514] gi|223894366|gb|EEF60819.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium Ellin514] Length = 164 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 99/176 (56%), Gaps = 18/176 (10%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY+F+ + +I V+ RNPI S L+ + + AGLF+LL A F+ + ++VY Sbjct: 1 MPEYLFYIFAALTLICGAFVIINRNPINSAMCLVLSIGSMAGLFVLLNAFFLGAVQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA----E 118 GAV+V FLF+IM+LD+ AE R++ G+ G+ + V A F+ + A + Sbjct: 61 AGAVMVLFLFVIMLLDLK---AEERRRVNLFGA-VTGVTS----VAAIAFIFYKALAASK 112 Query: 119 GELSRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +L + + G VE +G L++ Y P EI +LL++M+G I+L ++D+K Sbjct: 113 DQLPNVTDRAVGGTVE-LGTKLFSDYLLPFEILSILLLVAMVGVILL---SKKDLK 164 >gi|193782685|ref|NP_436087.2| NuoJ2 NADH:quinone oxidoreductase subunit 6 (chain J) [Sinorhizobium meliloti 1021] gi|307304387|ref|ZP_07584138.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti BL225C] gi|10945071|emb|CAC14146.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] gi|193073141|gb|AAK65499.2| NuoJ2 NADH:quinone oxidoreductase subunit 6 (chain J) [Sinorhizobium meliloti 1021] gi|306902589|gb|EFN33183.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti BL225C] Length = 166 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 96/165 (58%), Gaps = 9/165 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ ++++++ +V RNP++S +L+ F+ + +F++LGA +A+I + VY Sbjct: 1 MHQGFFLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFSAE 118 VGA++V FLF+IMM+D+ V + G L + + +L L++ + F+ Sbjct: 61 VGAIMVLFLFVIMMVDVREAVLQRFMPGGNLPALALLVLLGAEMVVLVLWSDRFIESPPV 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 E G+ + ++ K L++ Y P E++ ILL +++GAIVL Sbjct: 121 AERG-----GDAIRDLSKTLFSDYLLPFEVASVILLAALVGAIVL 160 >gi|134299886|ref|YP_001113382.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Desulfotomaculum reducens MI-1] gi|134052586|gb|ABO50557.1| NADH dehydrogenase subunit J [Desulfotomaculum reducens MI-1] Length = 172 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 29/186 (15%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L S + + S+ LVVT++N ++SV LI F+ AG+FLLL A+FVAM+ ++VY GAV Sbjct: 10 FVLLSGLVLGSALLVVTLKNLVHSVLWLIVTFIGVAGIFLLLNADFVAMVQVLVYAGAVC 69 Query: 68 VFFLFIIMMLD-IDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 + F +M++ D+E + P R +G FI I ++ L Sbjct: 70 IMIAFGVMLVQRQDMENSNPMNSRYKIAFPLIGGLFISI----------GLLMARTRWTL 119 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 S V+ + +L T Y P E++ +L +++ GA+VL+ K+++ Sbjct: 120 SGEAVPEKTVQGLAPILLTDYVIPFEVAAVLLTVALTGALVLV-------------KEVK 166 Query: 182 SNPDNS 187 +N D S Sbjct: 167 ANGDRS 172 >gi|56791570|gb|AAW30323.1| NADH dehydrogenase subunit 6 [Pinus thunbergii] Length = 186 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 11/182 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++ I F N +GL +LLG + AMI+ VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHPASFPIPVFRNTSGLLILLGPDLPAMISPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFS-----AEG 119 + V L ++MML++ I + R S IG IL E+ N + S + Sbjct: 61 IAVSSLPVVMMLNMKIAEIHEKVSRYPPVSGIIGLILRWEMFFIPDNDHIPSLPTCISTT 120 Query: 120 ELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 L V G N E G L+T Y+ +S I ++MIGA VL + +KRQ Sbjct: 121 SLRYTVHAGEIQSWTNSETSGNSLHTYYSVRFSVSSPIPSVAMIGATVLTMHRTTRVKRQ 180 Query: 175 DI 176 D+ Sbjct: 181 DV 182 >gi|269926640|ref|YP_003323263.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobaculum terrenum ATCC BAA-798] gi|269790300|gb|ACZ42441.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobaculum terrenum ATCC BAA-798] Length = 173 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 96/164 (58%), Gaps = 5/164 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S F LF+ + ++ + +VV RNP++ V ++ FVN A +F+LL A+F+A++ ++VY G Sbjct: 5 SWLFILFAVIGLLGAVMVVVARNPVHCVLFMLLTFVNIAAMFVLLDAQFIAILQVLVYSG 64 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAE--GE 120 A++V FLF++M+L R L + G+ E+IV ++ + G+ Sbjct: 65 AILVLFLFVVMLLQQAERPIPMLAARVQLPVALVVGGLFLLEIIVVTFGNIITAGRKGGD 124 Query: 121 LSRLVFK-GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + + + G NV+ +G+ L+T++ P EI+ +LL++ IGA+ L Sbjct: 125 TPQAIAQAGGNVQALGEQLFTRWLLPFEIASVLLLVAAIGALYL 168 >gi|312131903|ref|YP_003999243.1| NADH dehydrogenase subunit j [Leadbetterella byssophila DSM 17132] gi|311908449|gb|ADQ18890.1| NADH dehydrogenase subunit J [Leadbetterella byssophila DSM 17132] Length = 178 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 95/168 (56%), Gaps = 5/168 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY F+ +A+ + + + P++SV +LI F + +G+++LL A+F+A++ ++VY Sbjct: 9 MVEWVFYFFAVLALCGALGTILSKKPMHSVIALIITFFSLSGIYVLLNAQFLAVVNIIVY 68 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IM L++ E E R L + G++ ++V F+ ++ Sbjct: 69 AGAIMVLFLFVIMFLNLRQESNELRNTPMILAATISGLILVLMLVAVYRKAYFA---PVN 125 Query: 123 RLVFKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + F+ +EN+G +LY Y P E+ + L+++ GAI++ R + Sbjct: 126 PVTFRAETGMIENLGTLLYRHYMLPFELVSVLFLVAISGAILIGKREK 173 >gi|62161415|ref|YP_214918.1| NADH dehydrogenase subunit 6 [Anacropora matthai] gi|58220693|gb|AAW67957.1| NADH dehydrogenase subunit 6 [Anacropora matthai] Length = 197 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 28/196 (14%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F + S +V++ NPI+S+F LI F+ +A FL LG FVA++ L++Y+GA+ + Sbjct: 1 MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYMGAIAIL 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFM--V 114 FLF+IM+L++ P + G +G+FF +A+ ++ + V Sbjct: 61 FLFVIMLLNLT--DFPPAFRLGGEADMTNYIPIGLVVGTFFFSEVASSWLIIGGPYTPRV 118 Query: 115 F-------SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 F + + L + K N+E +G++LY Y ++ FILL++M+GAIVL Sbjct: 119 FLGAEIGRAWDLALPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLTQEI 178 Query: 168 RRDI----KRQDISKQ 179 +I KRQDI Q Sbjct: 179 GSEIGPVVKRQDIFFQ 194 >gi|86359319|ref|YP_471211.1| NADH-ubiquinone oxidoreductase chain J protein [Rhizobium etli CFN 42] gi|86283421|gb|ABC92484.1| probable NADH-ubiquinone oxidoreductase chain J protein [Rhizobium etli CFN 42] Length = 166 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 97/169 (57%), Gaps = 5/169 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ +++I++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFATVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V F+F+IMM+D+ E R G G+ +L L V +++S + Sbjct: 61 VGAIMVLFVFVIMMIDVR-EAVLQRFLPG--GNLPALVLVVLLGVEMLVLVLWSDRFSVI 117 Query: 123 RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V G+ + + L+ Y P EI+ ILL ++IGAIVL + ++ Sbjct: 118 EPVAMRGGDQLRQLSTTLFADYLLPFEIASVILLAALIGAIVLARKEQQ 166 >gi|295311694|ref|YP_003587371.1| NADH dehydrogenase subunit 6 [Cucurbita pepo] gi|259156822|gb|ACV96683.1| NADH dehydrogenase subunit 6 [Cucurbita pepo] Length = 205 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 99/182 (54%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDI-EVAEPRKK----RGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM I I E+ E + G +G F I +L + + + V++ Sbjct: 70 MMFHIQIAEIHESVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAE 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDLF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|20065788|ref|NP_612820.1|ND6_16049 NADH dehydrogenase subunit 6 [Acropora tenuis] gi|5817779|gb|AAD52916.1|AF152244_3 NADH dehydrogenase subunit 6 [Acropora tenuis] gi|19908468|gb|AAM02911.1|AF338425_5 NADH dehydrogenase subunit 6 [Acropora tenuis] Length = 197 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 34/199 (17%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F + S +V++ NPI+S+F LI F+ +A FL LG FVA++ L++YVGA+ + Sbjct: 1 MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFMVFS 116 FLF+IM+L ++ P + G +G+FF +A+ ++ ++ Sbjct: 61 FLFVIMLL--NLTDFPPAFRLGGEADMTNYIPIGLVIGTFFFSEVASSWLIIGGP---YT 115 Query: 117 AEG------------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 +G + + K N+E +G++LY Y ++ FILL++M+GAIVL Sbjct: 116 PQGFLGAEIGGAWDLAIPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLT 175 Query: 165 LRHRRD----IKRQDISKQ 179 + +KRQDI Q Sbjct: 176 QEIGSEVGPVVKRQDIFFQ 194 >gi|116619260|ref|YP_821416.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus Solibacter usitatus Ellin6076] gi|116222422|gb|ABJ81131.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Solibacter usitatus Ellin6076] Length = 164 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 22/178 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F F+ +A++ + VV +PI S SL+ + A L+LLLGAEF+A ++VY Sbjct: 1 MDVILFLTFAVIAVVCAINVVVQTHPISSALSLVGVMGSLAILYLLLGAEFIAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL--GS----FFIGILA--AELIVCASNFMV 114 GA++V F+F+IM+L+ AE K R +L G+ F+G++A + I ++ + Sbjct: 61 AGAIMVLFVFVIMLLNAG---AETTKGRSYLIPGAPLLIVFLGLVAFFVQRIFPSATMVR 117 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 F F G +IG L+T Y P E++ ++L++++GAIVL R++I+ Sbjct: 118 FGG--------FTGGGPRDIGNALFTTYLLPFEVTSLLILIAIVGAIVL---ARKEIE 164 >gi|109156519|ref|YP_654384.1| NADH dehydrogenase subunit 6 [Pavona clavus] gi|108744138|gb|ABG02358.1| NADH dehydrogenase subunit 6 [Pavona clavus] Length = 201 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 30/199 (15%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +F + S +V++ NPI+S+F L+ F +A FL LG FVA++ L++YVGA+ Sbjct: 3 FYTLAFGVVGSGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGAIA 62 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNF- 112 + FLF+IM+L++ D P + G +G+FF +A+ ++ + Sbjct: 63 ILFLFVIMLLNLTDF---PPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYA 119 Query: 113 --MVFSAEGE------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 +F AE + + K N+E +G++LY Y ++ ILL++++GAIVL Sbjct: 120 HRALFGAEIRRAWDLAIPWFLMKYQNMEALGRILYIACYYLFILASLILLVALVGAIVLT 179 Query: 165 LRHRRD----IKRQDISKQ 179 + +KRQDI Q Sbjct: 180 QEIGAEAGPMVKRQDIFFQ 198 >gi|255318324|ref|ZP_05359559.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acinetobacter radioresistens SK82] gi|262379068|ref|ZP_06072224.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter radioresistens SH164] gi|255304636|gb|EET83818.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acinetobacter radioresistens SK82] gi|262298525|gb|EEY86438.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter radioresistens SH164] Length = 175 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 99/184 (53%), Gaps = 23/184 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AIIS+ VVT NP++++ SLI + + AG+FL++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIISTIRVVTNTNPVHALLSLIVSLLAVAGIFLIVGAPFAGALEVIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNFMVFSAEG 119 V F+F++MML++ + E +K L SF +G+ ++V +A Sbjct: 65 VLFVFVVMMLNLGQQTMEQERKWLNSSAWAYPALMSFLMGL----ILVWMLGGEYTTAGA 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L R + + +G+ L+T Y +E++ +LL S++ A I R++ + Sbjct: 121 TLGREII---GPKAVGQSLFTHYLLLVEVAAMLLLASLVAAF--------HIGRREPGAE 169 Query: 180 LESN 183 E+N Sbjct: 170 EENN 173 >gi|33860718|ref|NP_892279.1| NADH dehydrogenase subunit J [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633660|emb|CAE18617.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 199 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 16/198 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S + II + V+ + N +YS F L F++ AGL+LLL A FVA ++VYV Sbjct: 8 QIICFSVLSLVVIIGALGVILLENIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GAV V +F IM+++ D++ +A + +R S + +L+ + V SN AE Sbjct: 68 GAVNVLIIFAIMLVNKKEDLKAIANIKSRRIISTSICLTLLSLLIRVDLSNTWGL-AEPN 126 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS--- 177 S + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DIS Sbjct: 127 AS---IGEESTVRIGEHLFSDYLLPFEVASVLLLMAMIGAIVL---ARRDVMNEDISTGL 180 Query: 178 ---KQLESNPDNSIVMVK 192 ++L P+ +++ K Sbjct: 181 PVDQELIEKPNEPLLIKK 198 >gi|49147174|ref|YP_025767.1| NADH dehydrogenase subunit 6 [Pseudendoclonium akinetum] gi|33439189|gb|AAQ18726.1| NADH dehydrogenase subunit 6 [Pseudendoclonium akinetum] Length = 203 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 15/187 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F +F + I S+ VV NP+Y+V LI AF NA+ L LL G +++A + +V+YVGA Sbjct: 4 FIIFCALLIASALFVVQCNNPVYAVLFLILAFFNASALTLLAGHDYLAALLIVLYVGATC 63 Query: 68 VFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNF----------MVFS 116 FFLF IM+L+I I E++E R K + + ILA +L ++F ++ S Sbjct: 64 TFFLFAIMILNIQIAEISEKRLKLAPISAIIGIILALQLETIVASFESPIVMDYLPLISS 123 Query: 117 AEGE----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + ++ L+ + +G +LYT YA L ++ ILL +MIG+I L L Sbjct: 124 IDSSGPEGVALLIDTSTQIYGLGAILYTHYASFLILASLILLSAMIGSISLTLSKGTGNL 183 Query: 173 RQDISKQ 179 RQ + +Q Sbjct: 184 RQQVFQQ 190 >gi|56791582|gb|AAW30329.1| NADH dehydrogenase subunit 6 [Lonicera sp. Bergthorsson 0301] Length = 178 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 23/182 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FL Sbjct: 3 SSLALVSGLMVVRAKNPVHSVSFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFL 62 Query: 72 FIIMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMV 114 F++MM I I EV G +G F I +L + + +MV Sbjct: 63 FVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYMV 122 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ + V N+E +G +LYT Y + ILL++MIGAIVL + +KRQ Sbjct: 123 YAGK------VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 176 Query: 175 DI 176 D+ Sbjct: 177 DV 178 >gi|150026253|ref|YP_001297079.1| NADH dehydrogenase I, J subunit [Flavobacterium psychrophilum JIP02/86] gi|149772794|emb|CAL44278.1| NADH dehydrogenase I, J subunit [Flavobacterium psychrophilum JIP02/86] Length = 170 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 95/173 (54%), Gaps = 23/173 (13%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S + + ++ L + +NPI+S L+ F + AG +LL A+F+A++ ++VY GA++ Sbjct: 8 FYFLSAITLATALLTIISKNPIHSAIYLVICFFSVAGHYLLFNAQFLAIVHIIVYSGAIM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL-------IVCASNFMVF-SAEG 119 V FLF IM+++++ E EP K I+A +L +VC VF A Sbjct: 68 VLFLFTIMLMNLN-EEGEPHK-----------IMATKLAAVVSFGLVCFVMLAVFIKAMP 115 Query: 120 ELSRLVFKGNNVENI---GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 ++ G + ++I GKVL +Y P E + +LL++M+G ++L + ++ Sbjct: 116 KMETYRASGQDFQSIKVLGKVLLNEYMVPFEFASILLLVAMMGVVLLSKKEKK 168 >gi|261420755|ref|YP_003254437.1| NADH dehydrogenase subunit J [Geobacillus sp. Y412MC61] gi|319768425|ref|YP_004133926.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. Y412MC52] gi|261377212|gb|ACX79955.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. Y412MC61] gi|317113291|gb|ADU95783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. Y412MC52] Length = 173 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 13/173 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + AI ++ + N ++ V +L+ FV AGL++LL AEFVA++ +++Y GA+ Sbjct: 8 FFLLALAAIAGGVTMLQLTNVVHMVIALVMTFVGIAGLYVLLSAEFVAVVQVLIYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--CASNFMV----FSAEGEL 121 + LF IM+ + R+++ G + + A +I A F + F A+G Sbjct: 68 IIMLFAIMLTR---HHTDERERQTTGGVWHKAVAALSVIAFGLAVYFGIRQLDFGADGS- 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G+N + IGK LY+ Y P EI ILL+++IGAIVL + + + + Sbjct: 124 ---ALSGDNAKAIGKSLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAEDE 173 >gi|197259884|ref|YP_002149679.1| NADH dehydrogenase subunit 6 [Madracis mirabilis] gi|169809232|gb|ACA84070.1| NADH dehydrogenase subunit 6 [Madracis mirabilis] Length = 187 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 102/186 (54%), Gaps = 13/186 (6%) Query: 7 FFYLFSFMAIISS-FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 FF F + II S +VV+ NP+ S+F L+ F+N+A FLLLG +F+A++ L++YVGA Sbjct: 3 FFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI-----VCASNFMVFSAEGE 120 + + FLF+IM+L ++ P KR + +I I I + +S ++ S + E Sbjct: 63 IAILFLFVIMLL--NLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLLLGSFQVE 120 Query: 121 LSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 L F +N+E +G VLY ++ FILL++MIG IVL K+QD Sbjct: 121 NWDLSFPWFLISYHNIEALGHVLYVSCFCLFLLASFILLVAMIGVIVLTQETEPLSKKQD 180 Query: 176 ISKQLE 181 + Q+ Sbjct: 181 LFFQIN 186 >gi|171914648|ref|ZP_02930118.1| NADH dehydrogenase subunit J [Verrucomicrobium spinosum DSM 4136] Length = 187 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 20/185 (10%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ FYLFS + ++ +VV +RNP+ S SL+ +F A LF+ L A F+ +I ++VY Sbjct: 1 MPAVLFYLFSALTLVFGLMVVVLRNPVASALSLVMSFAGLAALFISLDAYFIGIIQILVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI------------LAAELIVCAS 110 GAV+V FLFIIM+LDI E + +G + I L A A Sbjct: 61 AGAVMVLFLFIIMLLDIKAEALKKVNAFSVVGGALLAIVFIVQLGMILGGLEAGKKTVAD 120 Query: 111 NFMVFSAEGELSRL-VFKGN-------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + F A E +L K + + + +G L+ +Y + +++ G +LL+ IG ++ Sbjct: 121 VPIHFEAAAETQKLPTIKEDLAKKSLPDTKLVGMALFHRYPFQIQLMGALLLVGTIGVVI 180 Query: 163 LMLRH 167 L R Sbjct: 181 LSKRE 185 >gi|109156477|ref|YP_654410.1| NADH dehydrogenase subunit 6 [Siderastrea radians] gi|108744166|gb|ABG02384.1| NADH dehydrogenase subunit 6 [Siderastrea radians] Length = 197 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 30/197 (15%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F + S +V++ NPI+S+F LI F +A FL LG FVA++ L++YVGA+ + Sbjct: 1 MLAFGVVGSGIMVISALNPIHSIFWLIVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNFM-- 113 FLF+IM+L++ D P + G +G+FF +A+ ++ + Sbjct: 61 FLFVIMLLNLTDF---PPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYTHR 117 Query: 114 -VFSAE----GELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 F AE +L+ F K N+E +G++LY Y ++ ILL++MIGAIVL Sbjct: 118 AFFGAEIRKAWDLAAPWFLMKYQNMEALGRILYIACYYLFILASLILLVAMIGAIVLTQE 177 Query: 167 HRRD----IKRQDISKQ 179 + +KRQDI Q Sbjct: 178 VGSEVGPMVKRQDIFFQ 194 >gi|327191015|gb|EGE58069.1| putative NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli CNPAF512] Length = 166 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 95/169 (56%), Gaps = 5/169 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ +++I++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFAAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ E R G G+ +L L V +++S + Sbjct: 61 VGAIMVLFLFVIMMIDVR-EAVLQRFLPG--GNLPALVLVVLLGVEMLVLVLWSDRFSVI 117 Query: 123 RLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V G+ + + L+ Y P E + ILL +++GAIVL + + Sbjct: 118 EPVAMRGGDQIRQLSTTLFADYLLPFEAASVILLAALVGAIVLARKEQE 166 >gi|56421884|ref|YP_149202.1| NADH dehydrogenase subunit J [Geobacillus kaustophilus HTA426] gi|56381726|dbj|BAD77634.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Geobacillus kaustophilus HTA426] Length = 173 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 94/173 (54%), Gaps = 13/173 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + AI ++ + N ++ V +L+ F+ AGL++LL AEFVA++ +++Y GA+ Sbjct: 8 FFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVLIYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--CASNFMV----FSAEGEL 121 + LF IM+ + R+++ G + + A +I A F + F A+G Sbjct: 68 IIMLFAIMLTR---HHTDERERQTTGGVWHKAVAALSVIAFGLAVYFGIRQLDFGADGS- 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G+N + IGK+LY+ Y P EI ILL+++IGAIVL + + + + Sbjct: 124 ---ALAGDNAKAIGKLLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAEDE 173 >gi|109156505|ref|YP_654319.1| NADH dehydrogenase subunit 6 [Agaricia humilis] gi|108744068|gb|ABG02293.1| NADH dehydrogenase subunit 6 [Agaricia humilis] Length = 197 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 30/197 (15%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F + S +V++ NPI+S+F L+ F +A FL LG FVA++ L++YVGA+ + Sbjct: 1 MLAFGVVGSGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-DIEVAEPRKKRG-------------FLGSFFIGILAAELIVCASNF--- 112 FLF+IM+L++ D P + G +G+FF +A+ ++ + Sbjct: 61 FLFVIMLLNLTDF---PPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYAHR 117 Query: 113 MVFSAEGE------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +F AE + + K N+E +G+VLY Y ++ ILL++M+GAIVL Sbjct: 118 ALFGAEIRSAWDLAIPWFLMKYQNMEALGRVLYIACYYLFILASLILLVAMVGAIVLTQE 177 Query: 167 HRRD----IKRQDISKQ 179 + +KRQDI Q Sbjct: 178 VGSEAGPMVKRQDIFFQ 194 >gi|77917828|ref|YP_355643.1| NADH dehydrogenase I subunit J [Pelobacter carbinolicus DSM 2380] gi|77543911|gb|ABA87473.1| NADH dehydrogenase subunit J [Pelobacter carbinolicus DSM 2380] Length = 171 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 4/175 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L FY+ + + ++++ L +T +NP+++V L+ A A L+ LLGA +A +++Y Sbjct: 1 MATLLFYILAVITLLATLLCLTRKNPVHAVLYLVHALFAVALLYFLLGAPLLAAWQVILY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IM+ ID +AE R+ G+ +L+ L+ C +V Sbjct: 61 AGAIMVLFLFVIML--IDPSLAEKRRPGGWPRWLPAALLSGSLLACGGALIVMDPVATGG 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + F+ G+ L+ Y +EI ILL + +GA L RH R+D+S Sbjct: 119 IVSFQ-LTPRAFGRALFENYGLAVEIISLILLFAAVGAFHLGRRH-DSTTREDVS 171 >gi|228994013|ref|ZP_04153915.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus pseudomycoides DSM 12442] gi|229000082|ref|ZP_04159652.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides Rock3-17] gi|228759619|gb|EEM08595.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides Rock3-17] gi|228765811|gb|EEM14463.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus pseudomycoides DSM 12442] Length = 170 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L S AII L++ + ++ + +L+F F++ AGL+ LL AEFV + +++Y GA+ Sbjct: 4 FFLLSLTAIIGGILMLNLTKVMHMMLALVFTFLSIAGLYFLLSAEFVGVAQILIYSGAIT 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ D E R +L FF ++ ++ A N + F+ + Sbjct: 64 IIMIFGIMLTKHDAENESSFSFRKWL-IFFAVVVFGGVMYFAVNNIDFTNRSVQGSVPLH 122 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 N IG +LY++Y P E++ ILL++++GAIVL ++D K D Sbjct: 123 EQNTLQIGTLLYSKYVIPFELTSVILLVALVGAIVLA---KKDEKEGD 167 >gi|50261311|ref|YP_052920.1| NADH dehydrogenase subunit 6 [Saprolegnia ferax] gi|48237624|gb|AAT40673.1| NADH dehydrogenase subunit 6 [Saprolegnia ferax] Length = 233 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 38/225 (16%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF+LFS +A+ S+ V+ +N +YSVF LI F N GL L+ EF+A++ +++YVGA+ Sbjct: 10 FFFLFSSIALTSAIFVIYSKNTVYSVFFLILVFTNMTGLLLVAEVEFLAIMLIIIYVGAI 69 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLG------------------------SFFIGI-L 101 V FLF++MMLDI ++ G+L +FI L Sbjct: 70 TVLFLFVVMMLDIK-KIETNNNNYGYLPIIFLISFIFFIETFTIFSKSFTSYQYFIHKNL 128 Query: 102 AAELI--VCASNFMVFSAEGEL-----SRLVFKGN---NVENIGKVLYTQYAYPLEISGF 151 A E +C +S E ++ K + N+E +G++LYT A+ L +G Sbjct: 129 AMETYARLCEDWTWRYSPAYETVPYFHNQWHLKLDLITNIETLGQILYTYNAFFLLAAGL 188 Query: 152 ILLLSMIGAIVLMLRHRRDIK--RQDISKQLESNPDNSIVMVKVK 194 ILL+++IGA+ L L+ ++D K +++ KQL N N++ +K K Sbjct: 189 ILLIALIGAVTLTLKEKKDKKFSTKNLYKQLSRNYINAVYNIKQK 233 >gi|157144286|ref|YP_001456707.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis] gi|157149641|ref|YP_001456721.1| NADH dehydrogenase subunit 6 [Pocillopora eydouxi] gi|139471334|gb|ABO77151.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis] gi|139471349|gb|ABO77165.1| NADH dehydrogenase subunit 6 [Pocillopora eydouxi] gi|169809246|gb|ACA84083.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis] Length = 187 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 103/186 (55%), Gaps = 13/186 (6%) Query: 7 FFYLFSFMAIISS-FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 FF F + II S +VV+ NP+ S+F L+ F+N+A FLLLG +F+A++ L++YVGA Sbjct: 3 FFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI-----VCASNFMVFSAEGE 120 + + FLF+IM+L ++ P KR + +I I I + +S ++ S + E Sbjct: 63 IAILFLFVIMLL--NLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLLLGSFQIE 120 Query: 121 LSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 L F +N+E +G++LY ++ FILL++M+G IVL K+QD Sbjct: 121 NWDLSFPWFLISYHNIEALGQILYVSCFCLFLLASFILLVAMMGVIVLTQETESLSKKQD 180 Query: 176 ISKQLE 181 + Q+ Sbjct: 181 LFFQIN 186 >gi|150406472|ref|YP_001315115.1| NADH dehydrogenase subunit 6 [Chlorokybus atmophyticus] gi|126507709|gb|ABO15106.1| NADH dehydrogenase subunit 6 [Chlorokybus atmophyticus] Length = 259 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 117/246 (47%), Gaps = 67/246 (27%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F +FS +A+IS +V+ +NP++SV LI F + +GL LLLG +F AM+ LV Sbjct: 1 MTAEQTLFSIFSSVALISGIMVIRAKNPVHSVLFLILVFCSTSGLLLLLGLDFFAMVFLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-------------------------------------IEV 83 VYVGA+ V FLF++MML+I + + Sbjct: 61 VYVGAIAVLFLFVVMMLNIKMAEITENLLRYLPVGGLIGFIFVFEVLLVVDNDLIPLLSI 120 Query: 84 AEPRKK---------RGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRL--VFKG 128 +PR F FI ++ ++ + N +V E ++ L +F+G Sbjct: 121 TKPRASLLTEYFQIYSTFFFQSFIALIRGKINLTEWNLDRHDLVNDLEQAITNLTTIFQG 180 Query: 129 N--------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL-MLRHRRDIKR 173 N+E IG+++YT Y Y +S ILL++MIGAI+L M + + +KR Sbjct: 181 TIHHNEWVSKIHNVTNIEAIGQLVYTYYFYYFLMSSLILLVAMIGAILLTMHKGMKSVKR 240 Query: 174 QDISKQ 179 Q+I +Q Sbjct: 241 QEIFEQ 246 >gi|323481962|ref|YP_004237305.1| NADH dehydrogenase subunit 6 [Lophelia pertusa] gi|323461315|emb|CBZ41203.1| NADH dehydrogenase subunit 6 [Lophelia pertusa] Length = 168 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 11/166 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI- 79 +V++ NP++S F L+ F+N+A FLLLG +F+A++ L+VYVGA+ V FLF+IM+L++ Sbjct: 1 MVISALNPVFSPFWLVIVFINSAVFFLLLGVDFIALMFLLVYVGAIAVLFLFVIMLLNLT 60 Query: 80 DIEVAEPRKKR--------GFL-GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 D A +++ GFL G FF ++ V F + + L+ +N Sbjct: 61 DYPPAFFKREADMTNYIPIGFLIGVFFFSEASSSWFVLGP-FQKENWDLSFPWLIISYHN 119 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 +E +G+VLY ++ FILL++MIGAI L K Q + Sbjct: 120 IEALGQVLYVVCCCLFILASFILLVAMIGAIFLTQDKAPLGKTQQL 165 >gi|218900420|ref|YP_002448831.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus G9842] gi|218543477|gb|ACK95871.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus G9842] Length = 174 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSLTAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ + E R ++ FF + ++ A N + F+ E L Sbjct: 68 IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 NN IG +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 127 ENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171 >gi|41203479|ref|NP_957739.1| NADH dehydrogenase subunit 6 [Emiliania huxleyi] gi|33114165|gb|AAP94721.1| NADH dehydrogenase subunit 6 [Emiliania huxleyi] Length = 207 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 19/208 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L FY I S+ +V+ RNP+YSV L+ FVN + L L E++ ++ +VVY Sbjct: 1 MSTLIFYFIGTFCIFSALMVIFSRNPVYSVLFLVLTFVNVSSLLFFLELEYLPLVFIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI----------GILAAELIVCASNF 112 VGA+ V F+F++MML+I I + ++ L FI ++ + F Sbjct: 61 VGALAVLFIFVMMMLNIRISDLKENNEQ-LLPVIFILTAIFFFHIFFATKSDFASLKNFF 119 Query: 113 MVFSAEGEL--SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 F+ E L + L+ N N+ N+G +LY+++ Y ++GF+LLL+M+G I+L Sbjct: 120 STFNNEYSLITADLMLTTNWFSFDSNMRNLGFLLYSEFFYLFILAGFVLLLAMLGTIILT 179 Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVK 192 LR + Q S Q+ N + +I K Sbjct: 180 LRRFFKGRIQHPSFQIMRNFETAIKSTK 207 >gi|225848114|ref|YP_002728277.1| NADH-quinone oxidoreductase subunit j [Sulfurihydrogenibium azorense Az-Fu1] gi|225643991|gb|ACN99041.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit j) (ndh-1 subunit j) [Sulfurihydrogenibium azorense Az-Fu1] Length = 177 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 98/170 (57%), Gaps = 7/170 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S +A++S+ VV RN +YSV SLI A + +GLF LGAE + + +++Y A++ Sbjct: 8 FWVLSTIAVLSAIGVVFFRNIVYSVLSLISALIAISGLFFNLGAELIGALQILIYAVAIV 67 Query: 68 VFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 VF++ +I + E +P K L + F IL EL + + S G S +F Sbjct: 68 VFYVLVISTVPQYKGEAVDP--KYALLSAPFGFILFLELAYVSVYGLWASNTGIFSPDIF 125 Query: 127 KG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +N + + +L+T+Y +P E++ ILL++MIGAI+L R+DI ++ Sbjct: 126 NQISNAKAVATLLFTKYLFPFEVASLILLVAMIGAILL---GRKDIVEEE 172 >gi|159902716|ref|YP_001550060.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9211] gi|159887892|gb|ABX08106.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9211] Length = 200 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 13/179 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F + + I S VV + N +YS F L F+ AGL+LLL A FVA ++VYV Sbjct: 8 EQICFLILGLIVIGGSLGVVLLNNIVYSAFLLGGVFMGVAGLYLLLNASFVAAAQILVYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEP----RKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 GAV V LF IM+++ E+ +P R ++ G+L V + +F Sbjct: 68 GAVNVLILFAIMLVNKKEEL-KPIKALRTRKILSAGVCTGLLILLFRVDITTPWIFPGPN 126 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + L + E IG+ L+T Y P E++ +LL++MIGAIVL RRD+ DI Sbjct: 127 SIGEL-----STERIGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVLISDIGT 177 >gi|94968335|ref|YP_590383.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Koribacter versatilis Ellin345] gi|94550385|gb|ABF40309.1| NADH dehydrogenase subunit J [Candidatus Koribacter versatilis Ellin345] Length = 166 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F+ F+ + + ++ ++PI S SL+ + AGLFLL+GAEFV I ++VY Sbjct: 2 LHEILFFFFAAGCVAGAINLLAQKHPINSALSLVVVMASLAGLFLLMGAEFVGAIQVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IM+L+ +E K + +G+ AA ++ +++ E + Sbjct: 62 AGAIMVLFVFVIMLLNAGVEEHTKSSKI----AIVLGVPAAAIVATLITWILLHNEQSFT 117 Query: 123 RLV---FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 ++ G E IG +L+ Y P E++ ++L+ ++GA+V L + D+ Sbjct: 118 KVSIGELHGTGKE-IGMLLFGPYLLPFEVTSVLVLIGIMGAVV--LARKEDV 166 >gi|307318094|ref|ZP_07597530.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti AK83] gi|306896135|gb|EFN26885.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti AK83] Length = 166 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 94/160 (58%), Gaps = 9/160 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F LF+ ++++++ +V RNP++S +L+ F+ + +F++LGA +A+I + VYVGA++ Sbjct: 6 FLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVYVGAIM 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFSAEGELSR 123 V FLF+IMM+D+ V + G L + + +L L++ + F+ E Sbjct: 66 VLFLFVIMMVDVREAVLQRFMPGGNLPALALLVLLGAEMVVLVLWSDRFIESPPVAERG- 124 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G+ + ++ K L++ Y P E++ ILL +++GAIVL Sbjct: 125 ----GDAIRDLSKTLFSDYLLPFEVASVILLAALVGAIVL 160 >gi|197253931|ref|YP_002149705.1| NADH dehydrogenase subunit 6 [Stylophora pistillata] gi|169809260|gb|ACA84096.1| NADH dehydrogenase subunit 6 [Stylophora pistillata] Length = 187 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 13/186 (6%) Query: 7 FFYLFSFMAIISS-FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 FF F + II S +VV+ NP+ S+F L+ F+N+A FLLLG +F+A++ L++YVGA Sbjct: 3 FFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS----------NFMVF 115 + + FLF+IM+L ++ P KR + +I I I S +F + Sbjct: 63 IAILFLFVIMLL--NLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLFLGSFQIE 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + + +N+E +G++LY ++ FILL++MIG IVL K+QD Sbjct: 121 NWDLSFPWFLISYHNIEALGQILYVSCFCLFLLASFILLVAMIGVIVLTQETEFLSKKQD 180 Query: 176 ISKQLE 181 + Q+ Sbjct: 181 LFFQIN 186 >gi|297531550|ref|YP_003672825.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. C56-T3] gi|297254802|gb|ADI28248.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. C56-T3] Length = 173 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 17/175 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + AI ++ + N ++ V +L+ F+ AGL++LL AEFVA++ +++Y GA+ Sbjct: 8 FFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVLIYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--------FSAEG 119 + LF IM+ + ++R G + +AA L V A V F A+G Sbjct: 68 IIMLFAIMLTRHHTD----ERERPTTGGVWHKAVAA-LSVIAFGLAVYFGIRQLDFGADG 122 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G+N + IGK LY+ Y P EI ILL+++IGAIVL + + + + Sbjct: 123 S----ALSGDNAKAIGKSLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAEDE 173 >gi|75764475|ref|ZP_00743962.1| NADH-quinone oxidoreductase chain J [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488038|gb|EAO51767.1| NADH-quinone oxidoreductase chain J [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 174 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ + E R ++ FF + ++ A N + F+ E L Sbjct: 68 IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 NN IG +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 127 ENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171 >gi|326577457|gb|EGE27341.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis O35E] Length = 210 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 102/180 (56%), Gaps = 9/180 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +AI +S VVT N ++++ S+I + + AG+F +LGA F ++ ++VY GA++ Sbjct: 17 FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E + +L + + +++ + + F G + + Sbjct: 77 VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAMLIGFIGYGTDQSIQLQ 133 Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 + + +++G L+T Y +E++ F+LL +++ A L ++ + ++IS ++ PD Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHL---GKKALDDENISHS-QTCPD 189 >gi|193216256|ref|YP_001997455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroherpeton thalassium ATCC 35110] gi|193089733|gb|ACF15008.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroherpeton thalassium ATCC 35110] Length = 178 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 7/174 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F+ ++++S VV RN IYS FSL+F F A +++ L A+FVA+ +VVYVG ++ Sbjct: 10 FYFFAVLSVVSGMFVVFSRNIIYSAFSLLFTFFGVAAIYVFLSADFVAVTQIVVYVGGIL 69 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAEGELSRLV 125 V LF +M + +V F+ I + A L F E E+S Sbjct: 70 VLLLFGVMFTNKIYQVQLKTDVLNFIPGLLIMLATMGALLYTMIYRANWFHGEKEIS--- 126 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 G VE IG + + Y P EI+ +LL+++IGA L ++ Q Sbjct: 127 --GTVVEQIGVEIMSNYVLPFEIASIVLLVALIGAAFLARAEHHHPAQESGENQ 178 >gi|32267093|ref|NP_861125.1| NADH dehydrogenase subunit J [Helicobacter hepaticus ATCC 51449] gi|32263145|gb|AAP78191.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449] Length = 173 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 96/174 (55%), Gaps = 10/174 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLFS + I+S +VVT + +Y++ +L + +G+F +L AEF+ ++ ++VY Sbjct: 3 ETIAFYLFSTLCIVSFLIVVTSKRILYAMTALASGMIFISGIFFVLDAEFLGVVQIIVYS 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC-------ASNFMVFS 116 G+V+ + F +M D ++ E K + GI A ++VC SN + Sbjct: 63 GSVVALYAFAMMFFDTSKDIIESYKNEWVVCILCFGI--AVVLVCIFGMPLLGSNLEAVA 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L + + NN++ IG +++T+Y P EI+ F+LL++M+ I+L ++ Sbjct: 121 DSQNLLNIA-EMNNIQMIGYIIFTKYLIPFEIAAFMLLVAMVVGIILSIKRSEQ 173 >gi|30023327|ref|NP_834958.1| NADH dehydrogenase subunit J [Bacillus cereus ATCC 14579] gi|218235796|ref|YP_002370069.1| NADH dehydrogenase subunit J [Bacillus cereus B4264] gi|296505721|ref|YP_003667421.1| NADH dehydrogenase subunit J [Bacillus thuringiensis BMB171] gi|29898888|gb|AAP12159.1| NADH-quinone oxidoreductase chain J [Bacillus cereus ATCC 14579] gi|218163753|gb|ACK63745.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus B4264] gi|296326773|gb|ADH09701.1| NADH dehydrogenase subunit J [Bacillus thuringiensis BMB171] gi|326943092|gb|AEA18988.1| NADH dehydrogenase subunit J [Bacillus thuringiensis serovar chinensis CT-43] Length = 174 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ + E R ++ FF + ++ A N + F+ E L Sbjct: 68 IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 NN IG +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 127 ENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171 >gi|74325170|ref|YP_316590.1| NADH dehydrogenase subunit 6 [Thalassiosira pseudonana] gi|74100236|gb|AAZ99397.1| NADH dehydrogenase subunit 6 [Thalassiosira pseudonana] Length = 201 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 112/200 (56%), Gaps = 15/200 (7%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +LFFY FSF+ I SS + V +N IYSV L+ +FV+++ + LL E+V++I +++YVG Sbjct: 4 NLFFYFFSFVLITSSLMTVFSQNSIYSVLFLVLSFVSSSSILFLLECEYVSLIFIIIYVG 63 Query: 65 AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEG--- 119 A+ V FLF++MMLDI I + + K GSF I L L+V S F + Sbjct: 64 AIAVLFLFVVMMLDIKTISLVKDSLKYFPFGSFIGIAFLIEILLVVPSTFEAINPYNISF 123 Query: 120 -------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML-RHRRDI 171 ++L + + ++G +LYT Y +SG ILLL+ IG + L+L R + Sbjct: 124 LCNFHLDWFNKLDY-FTEIMSVGHLLYTDYLIQFLLSGNILLLATIGPVTLVLIRSIKTT 182 Query: 172 KRQDISKQLESNPDNSIVMV 191 K+Q KQL S NS++ + Sbjct: 183 KKQITFKQL-SRTYNSVLYI 201 >gi|164421209|ref|YP_001648662.1| NADH dehydrogenase subunit 6 [Igernella notabilis] gi|158939021|gb|ABW83942.1| NADH dehydrogenase subunit 6 [Igernella notabilis] Length = 175 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 4/173 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y F +AII +V+ N ++SV LI AF++ G+F L +++A I +++YVGA+ V Sbjct: 5 YFFILLAIICGLMVILTTNAVHSVIWLIGAFLSVTGIFFWLKXDYLAFILIIIYVGAISV 64 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IMML+++ E K + FI +I+ S F+ ++ L Sbjct: 65 LFLFVIMMLNLNNLTNEMNKVKTLGPGLFISAFLFLIILGQSAFVGGFRWDPITCL---- 120 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 +N++ IG LY+ Y + + +ILL++MIG IVL K+Q++ Q+ Sbjct: 121 SNIQLIGIELYSGCYYLIILVSYILLVAMIGVIVLARELNSGAKKQNMYIQIN 173 >gi|163784656|ref|ZP_02179484.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] gi|159880074|gb|EDP73750.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] Length = 174 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 103/183 (56%), Gaps = 21/183 (11%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++FS +A++S+ + RN +Y+V SLI + +GLF +GAE V I L+ Sbjct: 1 MELTQIAFWIFSSLAVLSAIGTIFFRNMVYTVLSLISTLIMVSGLFFTMGAELVGAIQLL 60 Query: 61 VYVGAVIVFFLFIIMML-DIDIEVAEPRK-----KRG---FLGSFFIGILAAELIVCASN 111 +Y A++VF++ +I + + + +P+ G FL ++ I A SN Sbjct: 61 IYAVAIVVFYVLVISTVPEFKGKAVDPKYMLLSIPVGFLIFLELAYVSIYGA----WKSN 116 Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 +FS E ++ K N + +G +L+T+Y +P E++ ILL++MIGAI++ R++ Sbjct: 117 TGIFSTE-----VIDKIGNAKAVGTMLFTKYLFPFEVASLILLVAMIGAIII---GRKEE 168 Query: 172 KRQ 174 K++ Sbjct: 169 KQE 171 >gi|206970330|ref|ZP_03231283.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH1134] gi|206734907|gb|EDZ52076.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH1134] Length = 174 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ + E R ++ FF + ++ A N + F+ E L Sbjct: 68 IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVGFANESTQGSLPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 NN IG +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 127 ENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171 >gi|326561575|gb|EGE11916.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 46P47B1] gi|326567947|gb|EGE18044.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC1] Length = 210 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 103/180 (57%), Gaps = 9/180 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +AI +S VVT N ++++ S+I + + AG+F +LGA F ++ ++VY GA++ Sbjct: 17 FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E ++ +L + + +++ + + F G + + Sbjct: 77 VLFVFVIMMLNLGTDTTE---EKTWLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133 Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 + + +++G L+T Y +E++ F+LL +++ A L ++ + ++IS ++ PD Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHL---GKKALDDENISHS-QTCPD 189 >gi|296112940|ref|YP_003626878.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis RH4] gi|295920634|gb|ADG60985.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis RH4] gi|326561164|gb|EGE11529.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 7169] gi|326562848|gb|EGE13136.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 103P14B1] gi|326567648|gb|EGE17756.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 12P80B1] gi|326574015|gb|EGE23964.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis CO72] gi|326577017|gb|EGE26912.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 101P30B1] Length = 210 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 103/180 (57%), Gaps = 9/180 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +AI +S VVT N ++++ S+I + + AG+F +LGA F ++ ++VY GA++ Sbjct: 17 FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E ++ +L + + +++ + + F G + + Sbjct: 77 VLFVFVIMMLNLGTDTTE---EKTWLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133 Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 + + +++G L+T Y +E++ F+LL +++ A L ++ + ++IS ++ PD Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHL---GKKALDDENISHS-QTCPD 189 >gi|56791580|gb|AAW30328.1| NADH dehydrogenase subunit 6 [Eschscholzia californica] Length = 178 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 91/178 (51%), Gaps = 11/178 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +V +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ V Sbjct: 1 VLSSPALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVS 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSR 123 FLF++MM I I R S IG IL E+ N L Sbjct: 61 FLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120 Query: 124 LVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 V G N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYSVRFLVPSLILLVAMIGAIVLTMHRTTKVKRQDV 178 >gi|224365671|ref|YP_002608398.1| NADH dehydrogenase subunit 6 [Vitis vinifera] gi|209954195|emb|CAQ77660.1| NADH dehydrogenase subunit 6 [Vitis vinifera] gi|239764731|gb|ACS15202.1| NADH dehydrogenase subunit 6 [Vitis vinifera] Length = 223 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 11/176 (6%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++ Sbjct: 28 ALVSGLMVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 87 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL------- 124 MM I I R S IG IL E+ I+ + + + + L Sbjct: 88 MMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAE 147 Query: 125 -VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 148 KVRSWTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRR 203 >gi|306841951|ref|ZP_07474629.1| NADH dehydrogenase subunit J [Brucella sp. BO2] gi|306287984|gb|EFM59392.1| NADH dehydrogenase subunit J [Brucella sp. BO2] Length = 129 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 12/133 (9%) Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-----ILAAELI-VCASN-FMVFSAEGELS-RLVF 126 MMLD+D KRG L +G IL ELI V AS F +G L V Sbjct: 1 MMLDVDFA----ELKRGALQYAPVGALVGLILLGELIFVFASRMFAPKLGQGALPIPDVA 56 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186 N +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ I Q+ P+ Sbjct: 57 TRTNTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPET 116 Query: 187 SIVMVKVKSGKGI 199 +I + KV++GKGI Sbjct: 117 AIEIRKVETGKGI 129 >gi|326569472|gb|EGE19532.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC8] Length = 210 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 103/180 (57%), Gaps = 9/180 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +AI +S VVT N ++++ S+I + + AG+F +LGA F ++ ++VY GA++ Sbjct: 17 FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E ++ +L + + +++ + + F G + + Sbjct: 77 VLFVFVIMMLNLGTDTTE---EKTWLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133 Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 + + +++G L+T Y +E++ F+LL +++ A L ++ + ++IS ++ PD Sbjct: 134 SDTISAKDVGIRLFTGYVLLVEVAAFLLLGALVAAYHL---GKKALDDENISHS-QTCPD 189 >gi|126695516|ref|YP_001090402.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9301] gi|126542559|gb|ABO16801.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9301] Length = 199 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 105/189 (55%), Gaps = 18/189 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S + +I + VV + + +YS F L F++ AGL+LLL A FVA ++VYV Sbjct: 8 QIICFTILSLVILIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 GAV V +F IM+++ D++ + + + +R S + +L+ + V +N S+ Sbjct: 68 GAVNVLIIFAIMLVNKKEDLKPINDIKSRRIISTSICLTLLSLLIRVDLTNTWSLSSTQN 127 Query: 119 --GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 GE S + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DI Sbjct: 128 SIGEESTI--------RIGEHLFSDYLLPFEVASVLLLMAMIGAIVL---ARRDVMSKDI 176 Query: 177 SKQLESNPD 185 S L + + Sbjct: 177 STGLPVDQE 185 >gi|326572765|gb|EGE22751.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC7] Length = 210 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 103/180 (57%), Gaps = 9/180 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +AI +S VVT N ++++ S+I + + AG+F +LGA F ++ ++VY GA++ Sbjct: 17 FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E ++ +L + + +++ + + F G + + Sbjct: 77 VLFVFVIMMLNLGTDTTE---EKTWLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133 Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 + + +++G L+T Y +E++ F+LL +++ A L ++ + ++IS ++ PD Sbjct: 134 SDTISAKDVGIRLFTGYVLLVEVAAFLLLGALVAAYHL---GKKALDDENISHS-QTCPD 189 >gi|225166014|ref|ZP_03727763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae bacterium TAV2] gi|224799739|gb|EEG18219.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae bacterium TAV2] Length = 177 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 101/184 (54%), Gaps = 11/184 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLFFY+FS +A+ VV +N + S L+ V+ AG+F+LL A +A++ + VY Sbjct: 1 MSSLFFYVFSTLALACGLGVVFNKNTVTSALCLLGVLVSLAGIFVLLEAFLLAVLLIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+ FLFI+M+ D KR + G+++A L++ A+ + ++ A G Sbjct: 61 AGAVVALFLFIVMLTD---AAGGGGGKRFSKTTLVAGLISAVLLL-AALYSIY-AHGSFD 115 Query: 123 RLVFK---GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + G +++ G+ L+T Y P++I GF+LL++M+G IV+ +++ Sbjct: 116 TIAPAASVGASLKTYGRELFTTYLLPVQIVGFLLLIAMLGVIVI---SKKNAGESVTGTA 172 Query: 180 LESN 183 E+N Sbjct: 173 SEAN 176 >gi|72383361|ref|YP_292716.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL2A] gi|72003211|gb|AAZ59013.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL2A] Length = 200 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 25/202 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + S + + S VV + N +YS F L F+ AGL+LLL A FVA ++VYVGAV Sbjct: 12 FLILSAVIVSGSLAVVLLENIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQILVYVGAVN 71 Query: 68 VFFLFIIMMLDIDIEVAEP----RKKR----GFLGSFFIGILAAELIVCASNFMVFSAEG 119 V LF IM+++ + E +P R ++ G G I +L I N ++ G Sbjct: 72 VLILFAIMLVN-NKEKLKPIKGLRTRKLISGGVCGGLLILLLRVS-ITTKWNLPGPTSIG 129 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDIS 177 E E IG+ L+T Y P E++ +LL++MIGAIVL RRD I R D++ Sbjct: 130 E--------EATERIGEHLFTDYLLPFELASILLLMAMIGAIVL---ARRDVSIPRADMN 178 Query: 178 --KQLESNPDNSIVMVKVKSGK 197 K +S D + ++ S K Sbjct: 179 DIKNQKSLSDRKVPLLSENSIK 200 >gi|37520222|ref|NP_923599.1| NADH dehydrogenase subunit J [Gloeobacter violaceus PCC 7421] gi|35211215|dbj|BAC88594.1| NADH dehydrogenase subunit 6 [Gloeobacter violaceus PCC 7421] Length = 197 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 14/165 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV +R+ ++S F L F+ AAGL++LL A+FVA +++YVGAV V LF IM+++ I Sbjct: 26 VVLLRSMVHSAFLLGLVFIGAAGLYVLLNADFVAAAQILIYVGAVNVLILFAIMLVNKRI 85 Query: 82 EVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT 140 P R + L A L VC +F ++ V N V IGK ++ Sbjct: 86 PTDRPAFSPRNAVTGLVCAGLFALLAVC-----IFQVPWQIQEPVAM-NTVVEIGKRFFS 139 Query: 141 QYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 ++ P E++ +LLL+M+GAI+L +R+ + ++E P+ Sbjct: 140 EFLLPFEVASVLLLLAMVGAIILA-------QREYVPDRVEGEPE 177 >gi|296040753|gb|ADG85344.1| NADH dehydrogenase subunit 6 [Silene conica] Length = 157 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 88/157 (56%), Gaps = 11/157 (7%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A++S +VV +NP++SV I F N AGL LLLG +F AMI LVVY+GA+ V FLF+ Sbjct: 1 LALVSGLMVVRAKNPVHSVLFFILVFCNTAGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGE---LSRLVFK 127 +MM I I R S IG I E+ I+ N + +G+ L+ +V+ Sbjct: 61 VMMFHIQIAEIHEEVLRYLPVSGLIGLIFWWEMFFILDNENIPLLPTQGQTNSLTYMVYA 120 Query: 128 G-----NNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 G N+E +G +LYT Y +S ILL++MIG Sbjct: 121 GKVRSWTNLETLGNLLYTHYFVWFLVSSLILLVAMIG 157 >gi|283795060|ref|YP_003359476.1| NADH dehydrogenase subunit 6 [Synedra acus] gi|261279716|gb|ACX62024.1| NADH dehydrogenase subunit 6 [Synedra acus] Length = 198 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 25/183 (13%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF+LFSF+ +SS V+++RN I SV SLI F+ ++ L L+L EF A + L+VYVGA+ Sbjct: 6 FFHLFSFLLTLSSISVISLRNSIQSVVSLIVCFITSSILLLILNCEFFAFLFLIVYVGAI 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--------ILAAELIVCASNFMVFSAE 118 V FLF++MML++ + + L F+G +L I +S Sbjct: 66 AVLFLFVLMMLEL-----KHLDNKANLFHIFLGLSVPVIFFLLTLPFIDSCFALNPYSEV 120 Query: 119 GELSRLVFKGN------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + S +F N ++E +G++LYT+YA ++G IL L+++ VL + Sbjct: 121 FQQSNRIFIENCFDEFYIEDDTTDIEVLGQLLYTRYALQFLLTGLILTLAVVCVGVLTID 180 Query: 167 HRR 169 ++ Sbjct: 181 RKK 183 >gi|194476796|ref|YP_002048975.1| NADH dehydrogenase subunit J [Paulinella chromatophora] gi|221272340|sp|B1X496|NU6C_PAUCH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, organellar chromatophore; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|171191803|gb|ACB42765.1| NADH dehydrogenase subunit J [Paulinella chromatophora] Length = 205 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 9/198 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F+ S I+ + VV + N +YS F L F++ AGL+LLL A FVA +++YV Sbjct: 8 QLICFFALSATLILGALGVVLLPNIVYSAFLLGSVFLSVAGLYLLLNASFVAAAQVLIYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV V LF IM+++ + E+ + G + FF G++ L+V + ++ Sbjct: 68 GAVNVLILFAIMLVNREEEL---KVIPGLAIRRFFSGVVCMGLLVILERIATTTHWAQVG 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK---RQDISKQ 179 + IG+ L++ Y P E++ +LL++MIGAIVL + D+K Q I + Sbjct: 125 PIPLGEEATIRIGEHLFSDYLLPFELASILLLIAMIGAIVLARKDLVDLKPIIEQRIDPK 184 Query: 180 LESNPDNSIVMVKVKSGK 197 P +S M + KS K Sbjct: 185 EIKLPSSS--MFRKKSKK 200 >gi|115375207|ref|ZP_01462473.1| NADH-quinone oxidoreductase chain 10 [Stigmatella aurantiaca DW4/3-1] gi|310818917|ref|YP_003951275.1| NADH dehydrogenase I subunit j [Stigmatella aurantiaca DW4/3-1] gi|115367769|gb|EAU66738.1| NADH-quinone oxidoreductase chain 10 [Stigmatella aurantiaca DW4/3-1] gi|309391989|gb|ADO69448.1| NADH dehydrogenase I, subunit J [Stigmatella aurantiaca DW4/3-1] Length = 167 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F F+F+ + S+ +V+ ++PI+S +L+ F AG+++LL A +A++ ++ Sbjct: 1 MNIEQALFGAFAFLTLFSAAVVIFAKSPIHSAMALVSTFFFLAGIYVLLWAHTLAVMQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 VY GA++V FLF+IM+L++ E PR R G+ +G+ AA I + S Sbjct: 61 VYAGAIMVLFLFVIMLLNLGEEPPGPRLTLTRIIGGATALGLFAALAITLER---LPSTV 117 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 +L +E IGK +++ + +P E +LL+SM+G++V Sbjct: 118 ADLGAQAQTFGTLETIGKAIFSSWLFPFEAVSLLLLVSMVGSVV 161 >gi|324329242|gb|ADY24502.1| NADH:ubiquinone oxidoreductase subunit J [Bacillus thuringiensis serovar finitimus YBT-020] Length = 174 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S AII L++ V ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSLSAIIGGILMLNVTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ + E R ++ FF + ++ A N + F+ E L Sbjct: 68 IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 N IG +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 127 EKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171 >gi|226348833|gb|ACO50737.1| NADH dehydrogenase subunit 6 [Micromonas pusilla CCMP1545] Length = 263 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 1/79 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +F+F+A+++ F V+ +NP+YSV LI F N +G+ +LLG +F AM+ LVVY Sbjct: 1 MTSLF-TIFAFLALVAGFCVIKAKNPVYSVLFLILVFCNVSGILVLLGLDFFAMVFLVVY 59 Query: 63 VGAVIVFFLFIIMMLDIDI 81 VGA+ V FLF++MML++ + Sbjct: 60 VGAIAVLFLFVVMMLNVKL 78 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 32/51 (62%) Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + V +G+V+YT Y ++ ILL++MIGAIVL + +KRQ++ Q Sbjct: 198 SPVAALGQVVYTYYVVFFLVASLILLVAMIGAIVLTMHKGVFVKRQEVWAQ 248 >gi|123967713|ref|YP_001008571.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. AS9601] gi|123197823|gb|ABM69464.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. AS9601] Length = 199 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 105/189 (55%), Gaps = 18/189 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S + +I + VV + + +YS F L F++ AGL+LLL A FVA ++VYV Sbjct: 8 QIICFTVLSLVILIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 GAV V +F IM+++ D++ +++ + +R S + +L+ + V +N S Sbjct: 68 GAVNVLIIFAIMLVNKKEDLKPISDIKSRRIISTSICLTLLSLLIRVDLTNVWRLSNPQN 127 Query: 119 --GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 GE S + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DI Sbjct: 128 SIGEESTI--------RIGEHLFSDYLLPFEVASVLLLMAMIGAIVL---ARRDVMSKDI 176 Query: 177 SKQLESNPD 185 S L + + Sbjct: 177 STGLPVDQE 185 >gi|13449312|ref|NP_085495.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] gi|48474289|sp|P60498|NU6M_BRACM RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|12768|emb|CAA48326.1| NADH dehydrogenase subunit 6 [Brassica rapa] gi|6851015|emb|CAA69769.3| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] gi|80978898|gb|ABB54698.1| NADH dehydrogenase subunit 6 [Brassica oleracea var. botrytis] Length = 205 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM I I EV G +G F I +L + + + V++ Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|328953784|ref|YP_004371118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca acetoxidans DSM 11109] gi|328454108|gb|AEB09937.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca acetoxidans DSM 11109] Length = 165 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 21/166 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + A+IS +VV NP+ S L+ F AG++LL A+F+A + ++VY GA++ Sbjct: 5 FFLLAATALISGIMVVIQVNPVRSALYLVLNFFALAGIYLLANAQFIAAVQIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLV 125 V FLF+IM+L++ +P + IG IL A L + ++++ ++RL Sbjct: 65 VLFLFVIMLLNLR----QPEEGG---AQLHIGQKILGASLATGTAALVIYT----ITRLK 113 Query: 126 F---KG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 KG E + K L+T Y P E++ +LL++++GA++L Sbjct: 114 LPPGKGMAADFGTTEMVAKSLFTDYLLPFEVTSILLLVAVVGAVIL 159 >gi|296274185|ref|YP_003656816.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Arcobacter nitrofigilis DSM 7299] gi|296098359|gb|ADG94309.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcobacter nitrofigilis DSM 7299] Length = 171 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F SFMAI ++ + P+Y+ L+ + ++ +GLF LL A F+ M+ ++VY Sbjct: 1 MTDILFIGLSFMAIAGGLTMLIHKQPMYAALGLLISILSVSGLFALLSATFLFMVQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA++ LFI+M L+ID EP+K R I+ +++ N ++ +A Sbjct: 61 AGAIMTLLLFILMFLNIDEHDLPKEPKKVR--------NIIIGAIVMLPLNIVILTAVSA 112 Query: 121 LSRL---VFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 L + + + N ++ IG +LY + E+ +LL++++GAIVL R + Sbjct: 113 LPKKDMSIIETNFGGIKEIGMLLYQNWLISFELISILLLVALVGAIVLAKRKK 165 >gi|94968320|ref|YP_590368.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Koribacter versatilis Ellin345] gi|94550370|gb|ABF40294.1| NADH dehydrogenase subunit J [Candidatus Koribacter versatilis Ellin345] Length = 169 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V FFY + +++ S+ V+ +N ++S LIF + AGL+L+L A FVA + +++ Sbjct: 4 VATPFFFYFLAALSVGSALGVILRKNAVHSAIFLIFTLLAQAGLYLMLYAPFVAGVQIIL 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 Y G ++V FLF+IM+++++ + E + K+ GS + L++ N G Sbjct: 64 YAGGIMVLFLFVIMLVNLERSLKEEQFNKQWLAGSAVAALFGVMLLLIYRN-----GGGT 118 Query: 121 L--SRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +R + + +N ++IG +LY Y P E++ +LL++++GA+V+ Sbjct: 119 FPSTRAILPEASNTQDIGVMLYRNYMLPFEVASLLLLVAIVGAVVM 164 >gi|257852744|gb|ACV71384.1| NADH dehydrogenase subunit 6 [Peridiscus lucidus] Length = 178 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLG------SFF------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G FF I +L ++ + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLQTQINTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|15606571|ref|NP_213951.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5] gi|2983792|gb|AAC07350.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5] Length = 178 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 3/179 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ + L F FS +AI+S ++T+RNP+Y V +L+ + + AG+F GAE V + L+ Sbjct: 1 MMGRLLIFGFFSILAILSGIGIITLRNPVYVVVALLSSLIAVAGIFFTAGAELVGALQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAE 118 +Y A+ VF++ +I + + R G + + L E+IV + S E Sbjct: 61 IYAVAIAVFYIIVISAVPWEKAKKSESHYRFEGLISLPVVLFLYIEMIVVFLLGVKASPE 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 G++++ + K N E IG +L+++Y E+ +LL+ MIGA VL+ R D + Sbjct: 121 GKIAKFIEKFGNTEVIGAILFSKYFLAFEVVSIVLLMGMIGA-VLIGRKESQTYEDDTA 178 >gi|239828577|ref|YP_002951201.1| NADH dehydrogenase subunit J [Geobacillus sp. WCH70] gi|239808870|gb|ACS25935.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. WCH70] Length = 173 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 3/175 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + L F + + +AII L++ + ++ V +L+F F++ AGL++LL AEFVA + ++ Sbjct: 1 MSGEYLAFLVLALVAIIGGVLMLNLTKVVHMVIALVFTFISIAGLYVLLSAEFVAAVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-G 119 +Y GA+ + LF IM+ E E GF F I A A ++ + G Sbjct: 61 IYSGAITIIMLFGIMLTRHREEEKEETTTGGFWRKTFTAI-AVSAFGIAVYLGIYQLDFG 119 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 E + + + NN E IG LY+ Y P EI+ ILL++++GAI+L ++ + ++ Sbjct: 120 EEAANLHE-NNTEQIGLALYSHYIIPFEITSIILLVALVGAIILAKKNDKGAPKK 173 >gi|284039759|ref|YP_003389689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma linguale DSM 74] gi|283819052|gb|ADB40890.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma linguale DSM 74] Length = 185 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 29/191 (15%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L FY F+ + + + V+ RN +Y+ F L+ AGLF+L GA+F+A+ +++Y Sbjct: 1 MVQLAFYFFAALTLGGALAVLLTRNVLYAAFFLLLTLFGVAGLFVLAGADFLAVAQIMIY 60 Query: 63 VGAVIVFFLFIIMMLD-----IDIEVAEPR---------KKRGFL------GSFFIGILA 102 VG V+V +F +M+ D+ +P K G++ G+ F+ + Sbjct: 61 VGGVLVLVIFGVMLTHKPEPPTDLNSQQPNRIVSANRFAKGAGWIIPVLVAGALFVAL-- 118 Query: 103 AELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + ++ SNF + N IGK L T+Y P EI+G +LL +++GA Sbjct: 119 -QTLLARSNFALLDQPAGWQ------NTTTVIGKQLMTEYVVPFEIAGILLLAALVGATY 171 Query: 163 LMLRHRRDIKR 173 L H + + Sbjct: 172 LAASHTKSSRH 182 >gi|78778546|ref|YP_396658.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9312] gi|78712045|gb|ABB49222.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9312] Length = 199 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 103/187 (55%), Gaps = 14/187 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S + +I + VV + + +YS F L F++ AGL+LLL A FVA ++VYV Sbjct: 8 QIICFIVLSLVVLIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEP----RKKRGFLGSFFIGILAAELIVCASN-FMVFSAE 118 GAV V +F IM+++ E +P + +R S + +L+ + V +N + + S E Sbjct: 68 GAVNVLIIFAIMLVN-KKEDLKPINNIKSRRIISTSICLTLLSLLIRVDLTNVWRLASPE 126 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DIS Sbjct: 127 NSIGE-----ESTIRIGEHLFSDYLLPFELASVLLLMAMIGAIVL---ARRDVMNKDIST 178 Query: 179 QLESNPD 185 L + + Sbjct: 179 GLPVDQE 185 >gi|295400700|ref|ZP_06810677.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus thermoglucosidasius C56-YS93] gi|312112606|ref|YP_003990922.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. Y4.1MC1] gi|294977281|gb|EFG52882.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus thermoglucosidasius C56-YS93] gi|311217707|gb|ADP76311.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. Y4.1MC1] Length = 173 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 II L++ + ++ V +L+F F++ AGL++LL AEFVA + +++Y GA+ + LF IM Sbjct: 16 IIGGVLMLNLSKVVHMVTALVFTFISIAGLYVLLSAEFVAAVQVLIYSGAITIIMLFGIM 75 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-GELSRLVFKGNNVENI 134 + E E GF I A A V+ + GE + + + N E I Sbjct: 76 LTRHREEDKENTTTGGFWRKTATAI-AVFAFGAAVYLGVYQLDFGEKAERLHE-KNTEQI 133 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G LY+ Y P EI+ ILL++++GAI+L + R+ +++ Sbjct: 134 GVALYSHYIIPFEITAVILLVALVGAIILAKKDDREAQKK 173 >gi|255535804|ref|YP_003096175.1| NADH-ubiquinone oxidoreductase chain J [Flavobacteriaceae bacterium 3519-10] gi|255342000|gb|ACU08113.1| NADH-ubiquinone oxidoreductase chain J [Flavobacteriaceae bacterium 3519-10] Length = 164 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 104/179 (58%), Gaps = 25/179 (13%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F+ + +A+ S+ V RNP+Y++ +LI F + A +++LL A+F+ ++ ++VY Sbjct: 1 MEQVIFFSVAAIALASAVYFVIARNPLYAILALIVTFFSIAAMYILLNAQFLGIVQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG---FLGSF-----FIGILAA--ELIVCASNF 112 GA++V FL+I+MML+++ A+ KK+ F+G F FIG+L A L Sbjct: 61 AGAIMVLFLYILMMLNLN--RADESKKQNLTKFIGVFAACILFIGLLGAYKGLGTGTYGT 118 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 V S+ G +N+G++L+ +Y P E++ ++L ++GA+++ ++D+ Sbjct: 119 GVDSSIGL----------TKNLGRLLFNEYVLPFELASILILAGIVGAVLI---GKKDL 164 >gi|56791560|gb|AAW30318.1| NADH dehydrogenase subunit 6 [Laurus nobilis] Length = 182 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 11/181 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +VV +NP++ V I F + +GL LLLG +F AMI+ VV++GA+ Sbjct: 1 VLSSPALVSGLMVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAAS 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSR 123 FLF++MM +I I R S IG IL E+ N L Sbjct: 61 FLFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120 Query: 124 LVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 V G N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ + Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFR 180 Query: 179 Q 179 + Sbjct: 181 R 181 >gi|291010624|ref|YP_003495129.1| NADH dehydrogenase subunit 6 [Pycnococcus provasolii] gi|258406747|gb|ACV72093.1| NADH dehydrogenase subunit 6 [Pycnococcus provasolii] Length = 199 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 11/188 (5%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A + FLV++ ++P++SV SLIF+FV + + L L + +A+I L+VYVGA+ + FLF+ Sbjct: 14 LACGAGFLVISSKSPVHSVLSLIFSFVLCSFVLLTLEIDILALIFLIVYVGAIAILFLFV 73 Query: 74 IMMLDIDIEVAEPRKKRGF-LGSFFIGIL--------AAELIVCASNFMVFSAEGELSRL 124 +M+L++ + A + F LG F + +L A V ++F+ F E + L Sbjct: 74 VMILNVKVAEARANLFQYFPLGFFLLSLLYFDLGLLMPASFSVDVAHFIPFYLEWPKAVL 133 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 F +E+IG +LYT + + L +G +LLL+++GAI+L L + RQ++S Q + Sbjct: 134 SF--GCLESIGFLLYTYFPFYLIGAGLLLLLAIVGAILLTLHRGVGVHRQEVSFQNRRDW 191 Query: 185 DNSIVMVK 192 + MV+ Sbjct: 192 VEVLHMVQ 199 >gi|257852644|gb|ACV71334.1| NADH dehydrogenase subunit 6 [Lacistema aggregatum] Length = 178 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ V FLF++MM +I Sbjct: 3 MVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVVMMFNIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSRLVFKG-----N 129 I R S IG IL E+ N L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|133900492|gb|ABO41412.1| NADH dehydrogenase subunit 6 [Malesherbia linearifolia] Length = 179 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 92/170 (54%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129 I R S IG IL E+ I+ + + + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRR 172 >gi|33239634|ref|NP_874576.1| NADH dehydrogenase subunit J [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237159|gb|AAP99228.1| NAD(P)H-quinone oxidoreductase chain 6 [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 200 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 11/171 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F + + + I S VV + N +YS F L F++ AGL+LLL A FVA ++VYV Sbjct: 8 EQICFLILASVIISGSLGVVLIENIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GAV V LF IM+++ E +A + +R F G G+LA L+ + ++ G Sbjct: 68 GAVNVLILFAIMLVNKREELKPIAGLQIRRFFSGCVCAGLLA--LLFRVNLTTKWATPGP 125 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + E IG+ L+T Y P E++ +LL++MIGAIVL RRD+ Sbjct: 126 QA---IGEEATERIGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDV 170 >gi|56791556|gb|AAW30316.1| NADH dehydrogenase subunit 6 [Calycanthus floridus] Length = 178 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 95/181 (52%), Gaps = 27/181 (14%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++ V I F + +GL LLLG +F AMI+LVV++GA+ FLF++ Sbjct: 5 ALVSGLMVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISLVVHIGAIAASFLFVV 64 Query: 75 MMLDIDIEVAEPRKK-------RGFLGSFF------------IGILAAELIVCASNFMVF 115 MM I++AE ++ G +G F I +L + + V Sbjct: 65 MMF--HIQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVH 122 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD Sbjct: 123 AGK------VRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQD 176 Query: 176 I 176 + Sbjct: 177 V 177 >gi|257852664|gb|ACV71344.1| NADH dehydrogenase subunit 6 [Aporusa frutescens] Length = 178 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI +Q Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRQ 172 >gi|257852666|gb|ACV71345.1| NADH dehydrogenase subunit 6 [Croizatia brevipetiolata] Length = 178 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV LI F + +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFLILVFCDTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129 I R S IG IL E+ I+ + + +G + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQGNTTSLRYTVYAGKVGSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKKVKRQDIFRR 172 >gi|311033313|ref|ZP_07711403.1| NADH dehydrogenase subunit J [Bacillus sp. m3-13] Length = 179 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 11/174 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + AI L++ + ++ V +L+F F++ AG++++L AEFVA + +++Y GA+ Sbjct: 10 FLFLAIAAIAGGVLMLNLTKVVHMVVALVFTFISIAGIYVMLSAEFVAAVQILIYSGAIT 69 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAE-GELSRLV 125 + LF IM+ + E R L G+ +G A F ++S + G Sbjct: 70 IIMLFGIMLTRHNDESETSGLGRKILVGAGVLGFAA------VMYFGLYSLDLGSQESAD 123 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 NN E IG +Y +Y P E++ ILL++++GAI+L RRD + D+ K+ Sbjct: 124 LHVNNTEQIGVAIYAKYVIPFELTSVILLVALVGAIILA---RRDDEDTDVIKE 174 >gi|196039591|ref|ZP_03106896.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus NVH0597-99] gi|196029751|gb|EDX68353.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus NVH0597-99] Length = 174 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSLFAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ + E R ++ FF + ++ A N + F+ E L Sbjct: 68 IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 N IG +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 127 EKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171 >gi|163942982|ref|YP_001647866.1| NADH dehydrogenase subunit J [Bacillus weihenstephanensis KBAB4] gi|163865179|gb|ABY46238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus weihenstephanensis KBAB4] Length = 174 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ + E R ++ FF + ++ A N + FS + L Sbjct: 68 IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNQSTQGSLPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 NN IG +LY++Y P E++ ILL++++GAI+L ++D +D Sbjct: 127 ENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEGEED 171 >gi|257852598|gb|ACV71311.1| NADH dehydrogenase subunit 6 [Acalypha californica] Length = 178 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172 >gi|78213918|ref|YP_382697.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9605] gi|78198377|gb|ABB36142.1| NADH dehydrogenase I chain 6 (or J) [Synechococcus sp. CC9605] Length = 199 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 11/172 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + S + +I + VV + N +YS F L F AGL+LLL A FVAM ++VYVGA+ Sbjct: 12 FLVLSAVVVIGALGVVLLSNIVYSAFLLGGVFTAVAGLYLLLNASFVAMAQILVYVGAIN 71 Query: 68 VFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 V LF IM+++ D++ +A +R G++A L+V +S G ++ Sbjct: 72 VLILFAIMLVNKREDLKAIANLTTRRVVSAGVCAGLMA--LLVRVVVTTPWSLPGPVA-- 127 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 IG+ L+T Y P E++ +LL++MIGAIVL RRD+ D+ Sbjct: 128 -VGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVL---ARRDVLATDV 175 >gi|133900414|gb|ABO41373.1| NADH dehydrogenase subunit 6 [Celastrus orbiculatus] Length = 179 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SVF I F++ +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVFFPILVFLDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLGYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|42784464|ref|NP_981711.1| NADH dehydrogenase subunit J [Bacillus cereus ATCC 10987] gi|118480335|ref|YP_897486.1| NADH dehydrogenase subunit J [Bacillus thuringiensis str. Al Hakam] gi|196045757|ref|ZP_03112987.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus 03BB108] gi|206976921|ref|ZP_03237823.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus H3081.97] gi|217962783|ref|YP_002341359.1| NADH dehydrogenase subunit J [Bacillus cereus AH187] gi|222098765|ref|YP_002532823.1| NADH dehydrogenase subunit j [Bacillus cereus Q1] gi|225867271|ref|YP_002752649.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus 03BB102] gi|301056761|ref|YP_003794972.1| NADH dehydrogenase subunit J [Bacillus anthracis CI] gi|42740396|gb|AAS44319.1| NADH dehydrogenase I, J subunit [Bacillus cereus ATCC 10987] gi|118419560|gb|ABK87979.1| NADH dehydrogenase subunit J [Bacillus thuringiensis str. Al Hakam] gi|196023588|gb|EDX62265.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus 03BB108] gi|206744887|gb|EDZ56292.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus H3081.97] gi|217062987|gb|ACJ77237.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH187] gi|221242824|gb|ACM15534.1| NADH dehydrogenase I, J subunit [Bacillus cereus Q1] gi|225787352|gb|ACO27569.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus 03BB102] gi|300378930|gb|ADK07834.1| NADH dehydrogenase subunit J [Bacillus cereus biovar anthracis str. CI] Length = 174 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ + E R ++ FF + ++ A N + F+ E L Sbjct: 68 IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 N IG +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 127 EKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171 >gi|256422827|ref|YP_003123480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga pinensis DSM 2588] gi|256037735|gb|ACU61279.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga pinensis DSM 2588] Length = 172 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 99/171 (57%), Gaps = 6/171 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FYL S +AII++ +V+T +PI+++ L+ +F+ A +FL LGA F A + ++VY G Sbjct: 2 PILFYLSSAVAIIATMMVITRYHPIHALLYLVVSFLAIAMVFLSLGAPFAAALEVIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAEGELS 122 A++V F+F++MML++ E A ++K + +I GIL L++ S ++ + +++ Sbjct: 62 AIMVLFIFVVMMLNLGKETAA-QEKDWLRPAVWIGPGILTLILLMEMSILLLAPPQRDVA 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 V V LY +Y +E+ GF+L ++GA + + ++ + R Sbjct: 121 MAVVTPRQV---ALSLYGEYIIAVELIGFLLTTGIVGAAHIGKQKKKSLHR 168 >gi|302543435|ref|ZP_07295777.1| NADH dehydrogenase I, J subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461053|gb|EFL24146.1| NADH dehydrogenase I, J subunit [Streptomyces himastatinicus ATCC 53653] Length = 295 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 102/201 (50%), Gaps = 24/201 (11%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + + +R ++S SL + A +L GA F+ ++ +VVY Sbjct: 16 EAVQFWVLGTVAVIGALCTILMRKAVHSALSLAGTMIVLAVFYLANGAYFLGVVQIVVYT 75 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---ELIVCA----SNFMVFS 116 GA+++ FLF++M++ + A K G ++ L +++CA ++ F Sbjct: 76 GAIMMLFLFVVMLVGV---TAADSLKETLKGQRWLAALCGLGFGILLCAGIGNASLKTFD 132 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G+ + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R Sbjct: 133 GLGQAN----SGGNVEGLAALVFTKYVFAFEITGALLITAAVGAMVLTHRERTERARSQR 188 Query: 177 SKQLESNPDNSIVMVKVKSGK 197 + E +V++GK Sbjct: 189 EQSEE----------RVRTGK 199 >gi|30265317|ref|NP_847694.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Ames] gi|47530855|ref|YP_022204.1| NADH dehydrogenase subunit J [Bacillus anthracis str. 'Ames Ancestor'] gi|49188130|ref|YP_031383.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Sterne] gi|49481260|ref|YP_039285.1| NADH dehydrogenase subunit J [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140267|ref|YP_086563.1| NADH dehydrogenase subunit J [Bacillus cereus E33L] gi|65317270|ref|ZP_00390229.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Bacillus anthracis str. A2012] gi|165870029|ref|ZP_02214686.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0488] gi|167636384|ref|ZP_02394684.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0442] gi|167641713|ref|ZP_02399957.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0193] gi|170689349|ref|ZP_02880543.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0465] gi|170708833|ref|ZP_02899268.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0389] gi|177654088|ref|ZP_02936098.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0174] gi|190567786|ref|ZP_03020698.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis Tsiankovskii-I] gi|196036274|ref|ZP_03103672.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus W] gi|218906471|ref|YP_002454305.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH820] gi|227818057|ref|YP_002818066.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. CDC 684] gi|229602758|ref|YP_002869509.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0248] gi|254686283|ref|ZP_05150142.1| NADH dehydrogenase subunit J [Bacillus anthracis str. CNEVA-9066] gi|254724279|ref|ZP_05186063.1| NADH dehydrogenase subunit J [Bacillus anthracis str. A1055] gi|254735222|ref|ZP_05192931.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Western North America USA6153] gi|254744426|ref|ZP_05202106.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Kruger B] gi|254755730|ref|ZP_05207763.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Vollum] gi|254759537|ref|ZP_05211562.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Australia 94] gi|30259995|gb|AAP29180.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. Ames] gi|47506003|gb|AAT34679.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49182057|gb|AAT57433.1| NADH dehydrogenase I, J subunit [Bacillus anthracis str. Sterne] gi|49332816|gb|AAT63462.1| NADH dehydrogenase I, subunit J (NADH-quinone oxidoreductase, chain J) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973736|gb|AAU15286.1| NADH dehydrogenase I, subunit J (NADH-quinone oxidoreductase, chain J) [Bacillus cereus E33L] gi|164714352|gb|EDR19872.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0488] gi|167510338|gb|EDR85740.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0193] gi|167528218|gb|EDR91000.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0442] gi|170126233|gb|EDS95125.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0389] gi|170666717|gb|EDT17486.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0465] gi|172080971|gb|EDT66050.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0174] gi|190561202|gb|EDV15175.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis Tsiankovskii-I] gi|195991066|gb|EDX55036.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus W] gi|218535828|gb|ACK88226.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH820] gi|227005897|gb|ACP15640.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. CDC 684] gi|229267166|gb|ACQ48803.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0248] Length = 174 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ + E R ++ FF + ++ A N + F+ E L Sbjct: 68 IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESAQGSLPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 N IG +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 127 EKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 171 >gi|157412515|ref|YP_001483381.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9215] gi|254525620|ref|ZP_05137672.1| NADH dehydrogenase i chain 6 (or j) [Prochlorococcus marinus str. MIT 9202] gi|157387090|gb|ABV49795.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9215] gi|221537044|gb|EEE39497.1| NADH dehydrogenase i chain 6 (or j) [Prochlorococcus marinus str. MIT 9202] Length = 199 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 104/189 (55%), Gaps = 18/189 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S + +I + VV + + +YS F L F++ AGL+LLL A FVA ++VYV Sbjct: 8 QFICFTVLSLVVLIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 GAV V +F IM+++ D++ + + + +R S + +L+ + V +N S Sbjct: 68 GAVNVLIIFAIMLVNKKEDLKPINDIKSRRIISTSICLTLLSLLIRVDLTNVWNLSIPEN 127 Query: 119 --GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 GE S + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DI Sbjct: 128 SIGEESTI--------RIGEHLFSDYLLPFEVASVLLLMAMIGAIVL---ARRDVMSKDI 176 Query: 177 SKQLESNPD 185 S L + + Sbjct: 177 STGLPVDQE 185 >gi|133900564|gb|ABO41448.1| NADH dehydrogenase subunit 6 [Trigonia nivea] Length = 179 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 88/170 (51%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129 I R S IG IL E+ N + + + L V Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEIFFILDNETIPLLPTQRNTTSLRYTIYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|56791564|gb|AAW30320.1| NADH dehydrogenase subunit 6 [Berberis bealei] Length = 179 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++ Sbjct: 5 ALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 64 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSRLVFKG 128 MM I I R S IG IL E+ N L V G Sbjct: 65 MMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYTVHAG 124 Query: 129 -----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ Sbjct: 125 KIRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDV 177 >gi|51892733|ref|YP_075424.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM 14863] gi|51856422|dbj|BAD40580.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM 14863] Length = 168 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 8/166 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + MA+ V+ + P+Y V S +FAF+ A L+L L +EF+A+I L+VY GA++ Sbjct: 5 FIIAGLMAVAGVLGVILAKPPVYQVMSTVFAFLGLAALYLSLQSEFLAVIQLIVYGGAIM 64 Query: 68 VFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + FLF+I +L +E + R L + +G L+V + +F EG + Sbjct: 65 ILFLFVITLLTARRDPVEKDAGQLTRPKLIGYAVG---GALLVMLAIVGLFGGEGRIGWT 121 Query: 125 VFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + V+ G L T +P EI FIL++++IG ++L+ RHR Sbjct: 122 QVPADFGQVKAFGYELLTTNVFPFEILAFILMVAVIGVMLLVGRHR 167 >gi|224178046|ref|YP_002600968.1| subunit 6 of NADH-plastoquinone oxidoreductase [Pyramimonas parkeae] gi|215882713|gb|ACJ71086.1| subunit 6 of NADH-plastoquinone oxidoreductase [Pyramimonas parkeae] Length = 172 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 5/171 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q F +F+F++I S VV N +Y+ F L V+ AG +LLL A+F+A ++ Sbjct: 1 MNLQDFCFSIFTFLSITGSLGVVFFPNLVYAAFFLGVTLVSVAGFYLLLNADFLAAAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAE 118 +YVG + + LF IM++D + V P K+ F+I G LA L + + +++ Sbjct: 61 LYVGGINILILFAIMLVDANARVTRPDSKKT--NPFWIVQGSLAVGLFLLLTK-VIYITP 117 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + N V IG+ +++ + +P E+ +LL+++IG +VL R + Sbjct: 118 WPSPPFIPVTNTVYFIGRHIFSDFLFPFELVSILLLIALIGVVVLAKREQN 168 >gi|118340560|gb|ABK80610.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6 subunit J [uncultured marine Nitrospinaceae bacterium] Length = 169 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 90/163 (55%), Gaps = 2/163 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L FY + ++ + VV +P+ S SLI + AG+F+L A F+A++ +++Y Sbjct: 1 MELLIFYPLAGFCVVLALGVVFNNSPVGSAISLIGMMLGLAGIFILQQAHFIAILQIIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA++V F+F+IM+L++ + ++R L S GILA ++ S+ + Sbjct: 61 AGAIMVLFMFVIMLLNLKKGDDAGWISRERNLLLSVLTGILATGILYKVSDIIFTRKMNT 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + L V IG+ L+T + P E++ +LL +M+GA+VL Sbjct: 121 PAILTDSFGTVAVIGETLFTDFVLPFEVASILLLAAMVGAVVL 163 >gi|133900460|gb|ABO41396.1| NADH dehydrogenase subunit 6 [Goupia glabra] Length = 179 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI+ F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900566|gb|ABO41449.1| NADH dehydrogenase subunit 6 [Turnera ulmifolia] Length = 178 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 93/170 (54%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129 I R S IG IL E+ I+ + + + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRR 172 >gi|320160248|ref|YP_004173472.1| NADH-quinone oxidoreductase subunit J [Anaerolinea thermophila UNI-1] gi|319994101|dbj|BAJ62872.1| NADH-quinone oxidoreductase chain J [Anaerolinea thermophila UNI-1] Length = 179 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 107/184 (58%), Gaps = 15/184 (8%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F++ +F+A+ + ++ RN +YS L+ F A L+L+LGA F+A+ + VY G Sbjct: 2 TIVFFVLAFVAVGCAISMLITRNAVYSALFLVLNFATVAILYLILGAPFIALSQITVYAG 61 Query: 65 AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 +VIV FLF++M+L + + AEP + + F+ +LA L + V G+L Sbjct: 62 SVIVLFLFVVMLLGAERLPGAEPLRWQRFIAMGLGLVLAVNL-----GWSVVQRAGDLGV 116 Query: 124 LVFK----GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM----LRHRRDIKRQD 175 + G VE +G+VL+TQY P++I FILL++++GA+VL + RR++ R+ Sbjct: 117 ITAPEKGFGAPVE-VGRVLFTQYVLPIQIVAFILLVAVVGAVVLARSEEISRRRELYRKP 175 Query: 176 ISKQ 179 +K+ Sbjct: 176 EAKE 179 >gi|257852616|gb|ACV71320.1| NADH dehydrogenase subunit 6 [Moultonianthus leembruggianus] Length = 178 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|188996810|ref|YP_001931061.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfurihydrogenibium sp. YO3AOP1] gi|188931877|gb|ACD66507.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfurihydrogenibium sp. YO3AOP1] Length = 176 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 102/181 (56%), Gaps = 7/181 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ F++ S +A+IS+ VV RN +Y+V SLI + +GLF LGAE V + ++ Sbjct: 1 MELSAVAFWVLSTIAVISAIGVVFFRNIVYAVLSLISTLIAISGLFFNLGAELVGALQIL 60 Query: 61 VYVGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +Y A++VF++ +I + + +P K L F IL EL + + S +G Sbjct: 61 IYAVAIVVFYVLVISTVPQYKGQAIDP--KYTLLSLPFGFILFLELAYVSIYGLWASNKG 118 Query: 120 ELSRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 S +F K +N + + +L+T+Y +P E++ ILL++MIGAI+L R+DI + Sbjct: 119 IFSPDIFTKISNAKAVASLLFTKYLFPFEVASLILLVAMIGAILL---GRKDIVEDEEGG 175 Query: 179 Q 179 Q Sbjct: 176 Q 176 >gi|319955926|ref|YP_004167189.1| NADH dehydrogenase subunit j [Nitratifractor salsuginis DSM 16511] gi|319418330|gb|ADV45440.1| NADH dehydrogenase subunit J [Nitratifractor salsuginis DSM 16511] Length = 186 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 106/194 (54%), Gaps = 19/194 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTV--RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ FY F+ +I++ +VTV +N +Y++ SL V +GLF +LGA+F+ ++ L+ Sbjct: 1 METFAFYFFA--VLITALFLVTVLSQNILYAMTSLAAGMVLISGLFFILGADFLGVVQLI 58 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VYVGAV+ + F +M D + E + F +G L A ++V +F+A Sbjct: 59 VYVGAVMALYAFAMMFFDATGRIKERHSHPALV--FLLGGLTAVMLVV-----IFAAPQI 111 Query: 119 GELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKR 173 G + +F +N +G VL+T+Y P E++ +LL++MI I+L + R + + Sbjct: 112 GHNIQALFPTADGMDNPHAVGLVLFTKYLVPFEVAAVMLLVAMIAGIILAGKKMERSLSK 171 Query: 174 QDISKQLESNPDNS 187 D SK LE++ + Sbjct: 172 IDDSK-LETSDEKD 184 >gi|257852650|gb|ACV71337.1| NADH dehydrogenase subunit 6 [Lophopyxis maingayi] Length = 178 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLG------SFF------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G FF I +L + + +MV++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYMVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTKRVKRQDIFRR 172 >gi|138896927|ref|YP_001127380.1| NADH dehydrogenase subunit J [Geobacillus thermodenitrificans NG80-2] gi|134268440|gb|ABO68635.1| NADH dehydrogenase I, J subunit [Geobacillus thermodenitrificans NG80-2] Length = 173 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 10/168 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + AI ++ + N ++ V +L+ F+ AGL++LL AEFVA++ +++Y GA+ Sbjct: 8 FFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVLIYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFF--IGILAAELIVC-ASNFMVFSAEGELSRL 124 + LF IM+ + E + G I +LA L V + F A+G Sbjct: 68 IIMLFAIMLTRHHADDKERQTTGGVWHRAVAAISVLAFGLAVYFGIRRLDFGADGS---- 123 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +N IGK LY+ Y P EI ILL+++IGAIVL ++D K Sbjct: 124 ALAADNAREIGKWLYSYYTIPFEIVSVILLVALIGAIVLA---KKDGK 168 >gi|266679|sp|Q00243|NU6C_PLEBO RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName: Full=NAD(P)H dehydrogenase I, chain 6; AltName: Full=NDH-1, chain 6 gi|441181|dbj|BAA00816.1| NADH-ubiquinone oxidoreductase chain 6 homolog [Leptolyngbya boryana IAM M-101] Length = 199 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 14/188 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M I S+ VV + N +YS F L F++ AGL+LLL A+FVA +++Y Sbjct: 7 VQIVSFAILAAMMIGSAIGVVLLENVVYSAFLLGGVFISIAGLYLLLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117 VGAV V LF IM+++ E +P K AA +VCA F MV + Sbjct: 67 VGAVNVLILFAIMLVN-KREAFQPIAKSWIRR-------AATALVCAGIFALLSAMVLTT 118 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDI 176 +S V +++ IG +T + P E++ +LL++++GAIVL R D D Sbjct: 119 PWAISTAVPIESSIITIGLHFFTDFLLPFELASILLLMALVGAIVLARREFLPDEDEADT 178 Query: 177 SKQLESNP 184 + L P Sbjct: 179 ALTLPERP 186 >gi|152993798|ref|YP_001359519.1| NADH dehydrogenase subunit J [Sulfurovum sp. NBC37-1] gi|151425659|dbj|BAF73162.1| NADH-quinone oxidoreductase, chain J [Sulfurovum sp. NBC37-1] Length = 187 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 103/190 (54%), Gaps = 9/190 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLFS + I + V +N +Y++ SL V +G F +LGA+F+ ++ L+VYV Sbjct: 3 ETIAFYLFSALTIGLFLITVMSKNVLYAMTSLAAGMVLISGFFFILGADFLGVVQLIVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA++ + F +M D ++ E + F +G L+A +V +++ + Sbjct: 63 GAIMALYSFAMMFFDATKDIKEKNTNPALI--FVLGGLSALALVLMFAAPIYNESIQALY 120 Query: 124 LVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +G N +++G VL+T+Y P E++ +LL++MI I+L K+ D S ++ Sbjct: 121 PMHEGVGNAQDVGIVLFTKYLVPFEVAAVMLLVAMIAGIILAG------KKMDQSLTKDT 174 Query: 183 NPDNSIVMVK 192 + D+ I+ K Sbjct: 175 SVDDEILTQK 184 >gi|133900456|gb|ABO41394.1| NADH dehydrogenase subunit 6 [Galearia filiformis] gi|257852660|gb|ACV71342.1| NADH dehydrogenase subunit 6 [Panda oleosa] Length = 178 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRLVFKG--------N 129 I R S IG I E+ I+ + + + + L + G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTGYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|114177209|gb|ABI53762.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ10101] Length = 235 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 88/190 (46%), Gaps = 55/190 (28%) Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 SVF LI F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ E +K+ Sbjct: 50 SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIP-----GEKERKK 104 Query: 91 G---------FLGSFFIGILAAELIVCASNFMV-------------------FSAEGELS 122 G +G GILAAEL + ++ +E E Sbjct: 105 GEETGRIGTPAIGILIGGILAAELASAVPDSIIKNYELTNILSDRNRDKSGLIGSEKESI 164 Query: 123 RLVFK----------------------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 K G N+E IGKVLY Y Y + FILL++MIGA Sbjct: 165 TTGIKNNIETGYPYDYFDYFLTLNGSGGTNMEAIGKVLYINYYYAFILVSFILLVAMIGA 224 Query: 161 IVLMLRHRRD 170 IVL L+ + Sbjct: 225 IVLGLQSSDE 234 >gi|301061344|ref|ZP_07202126.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2] gi|300444663|gb|EFK08646.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2] Length = 299 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 7/166 (4%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++S+ L V+ R +++V LI +F A LF LLGA F+A + +++Y GAV+V FLFIIM Sbjct: 137 VVSTGLAVSQRKLVHAVVFLIISFFATALLFYLLGAPFLAALEVIIYAGAVMVMFLFIIM 196 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSAEGELSRLVFKGNNVEN 133 L ++ E EP L +F IL L++ + + G L +L Sbjct: 197 TLKLEKE--EPESGTS-LRPWFPAILLGGISLVLLVTLLWMGQDHGALLKLAMAAPR--E 251 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 +GK L+ ++ + +E+ F+L +++ GA+ L H++ K D ++ Sbjct: 252 VGKYLFREFWFSVEVVSFLLFVALAGALYLAKEHKKPTKTADSQQE 297 >gi|257852700|gb|ACV71362.1| NADH dehydrogenase subunit 6 [Viola pubescens] Length = 178 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900412|gb|ABO41372.1| NADH dehydrogenase subunit 6 [Casearia sylvestris] Length = 179 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 88/177 (49%), Gaps = 21/177 (11%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 ALMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVF- 126 I I R S IG LI F +F E L V+ Sbjct: 61 IQIAEIHEEVLRYLPVSAIIG-----LIFWWEMFFIFDNESIPLLPTQRKTTSLRYTVYA 115 Query: 127 ----KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 116 VKVRNWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900572|gb|ABO41452.1| NADH dehydrogenase subunit 6 [Dillenia philippinensis] Length = 179 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 88/175 (50%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFFIPVFCDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI+ F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|15606522|ref|NP_213902.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5] gi|2983740|gb|AAC07301.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5] Length = 162 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 94/171 (54%), Gaps = 14/171 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L F++ IIS+ V +NPI+ + + + + AGLFL LGAE +A + L++Y Sbjct: 1 MEWLIFFILGAWLIISALGTVLAKNPIHVMLFFLSSLLAMAGLFLSLGAELLAGLQLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV----CASNFMVFSAE 118 A++VF++ I + + K + F G + IL A I+ ++MV + Sbjct: 61 AVAIVVFYVLAITTIPWE-------KIKRFEGVYKTEILTASPILLVLFLVMSYMVIKGK 113 Query: 119 -GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 E S +V +NVE +G+ L+T Y +P E++ ILL++M+GAI+L + Sbjct: 114 FAEPSGVV--KDNVEAVGRTLFTSYLFPFEVASVILLVAMVGAILLARKEE 162 >gi|193215449|ref|YP_001996648.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroherpeton thalassium ATCC 35110] gi|193088926|gb|ACF14201.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroherpeton thalassium ATCC 35110] Length = 176 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 9/147 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 +NP+ S L+ F GL+L L A+F+A++ ++VY GA++V FLF IM+L ++ E + Sbjct: 26 KNPVSSALFLVLNFFALGGLYLSLEAQFIAVVQVIVYAGAIMVLFLFTIMLLSLEDESSL 85 Query: 86 PRK---KRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSRLV-FKGNNVENIGKVLYT 140 + K+GF +F I G+ E++ + +SRL + +V+ IGK L T Sbjct: 86 IERFDLKKGF--AFLISGVFLVEILYIVG--FKLTPVKPVSRLTPVQIGDVKTIGKALLT 141 Query: 141 QYAYPLEISGFILLLSMIGAIVLMLRH 167 +Y +P EI +LLL++IGA++L R Sbjct: 142 EYVFPFEIISIVLLLAIIGAVLLAKRK 168 >gi|257852624|gb|ACV71324.1| NADH dehydrogenase subunit 6 [Suregada glomerulata] Length = 178 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|9280596|gb|AAF86486.1|AF279439_1 NADH dehydrogenase subunit 6 [Lupinus luteus] gi|9280600|gb|AAF86488.1|AF279441_1 NADH dehydrogenase subunit 6 [Lupinus mutabilis] Length = 205 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 11/176 (6%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG 128 MM I I R S IG IL E+ N + + + + L V+ G Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAG 129 Query: 129 -----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 130 KVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDVFRR 185 >gi|257852730|gb|ACV71377.1| NADH dehydrogenase subunit 6 [Krameria lanceolata] Length = 178 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTXVKRQDVFRR 172 >gi|257852704|gb|ACV71364.1| NADH dehydrogenase subunit 6 [Cephalotus follicularis] gi|257852706|gb|ACV71365.1| NADH dehydrogenase subunit 6 [Rourea minor] gi|257852710|gb|ACV71367.1| NADH dehydrogenase subunit 6 [Crinodendron hookerianum] gi|257852712|gb|ACV71368.1| NADH dehydrogenase subunit 6 [Sloanea berteroana] gi|257853521|gb|ACV71763.1| NADH dehydrogenase subunit 6 [Averrhoa carambola] Length = 178 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|133900490|gb|ABO41411.1| NADH dehydrogenase subunit 6 [Lunania parviflora] Length = 179 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 88/177 (49%), Gaps = 21/177 (11%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 ALMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-----------GELSRLVFK 127 I I R S IG LI F + E L V+ Sbjct: 61 IQIAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTASLRYTVYA 115 Query: 128 G-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 G N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 116 GKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852748|gb|ACV71386.1| NADH dehydrogenase subunit 6 [Daphniphyllum macropodum] Length = 178 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRLVFK--------GN 129 I R S IG IL E+ N + + + L +K Sbjct: 63 IAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYKVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|257852646|gb|ACV71335.1| NADH dehydrogenase subunit 6 [Lozania pittieri] Length = 178 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|229082509|ref|ZP_04214972.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock4-2] gi|228700941|gb|EEL53464.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock4-2] Length = 162 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 89/161 (55%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAIVL ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLA---KKDEKEED 159 >gi|229087782|ref|ZP_04219904.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-44] gi|228695541|gb|EEL48404.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-44] Length = 164 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S AII L++ + ++ + +L+F F++ AGL+ LL AEFV + +++Y GA+ + + Sbjct: 2 SLTAIIGGILMLNLTKVMHMMLALVFTFLSIAGLYFLLSAEFVGVAQILIYSGAITIIMI 61 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRLVFKGNN 130 F IM+ D E R L F+ ++A ++ A N + F+ + L N Sbjct: 62 FGIMLTKHDAESESSFSFRKLL--IFLAVVAFGGVMYFAVNNIDFTNQNVQGSLPLHEQN 119 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 IG +LY++Y P E++ ILL++++GAIVL ++D + D Sbjct: 120 TLQIGTLLYSKYVIPFELTSVILLVALVGAIVLA---KKDEEEGD 161 >gi|4261644|gb|AAD13944.1|S64009_1 NADH dehydrogenase subunit 6 [Marchantia polymorpha] Length = 109 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/83 (49%), Positives = 56/83 (67%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F +A++S +V+ +NP++SV LI F N +GL +LLG +F AMI LVVYVGA+ Sbjct: 4 FYVFVVLALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGAIA 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR 90 V FLF++MML I IE R Sbjct: 64 VLFLFVVMMLHIRIEEIHENVLR 86 >gi|133900552|gb|ABO41442.1| NADH dehydrogenase subunit 6 [Sauvagesia erecta] Length = 179 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV LI F + +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFLILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV+ G +G F I +L + + +MV++ + Sbjct: 63 IAEIHEEVSRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTNSLRYMVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|323649908|ref|YP_004237281.1| NADH dehydrogenase subunit 6 [Ricinus communis] gi|322394288|gb|ADW96045.1| NADH dehydrogenase subunit 6 [Ricinus communis] Length = 217 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 96/185 (51%), Gaps = 27/185 (14%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++ Sbjct: 10 ALVSGLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVV 69 Query: 75 MMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSA 117 MM I I EV G +G F I +L + + + V++ Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQ 174 + V N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQ Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQ 182 Query: 175 DISKQ 179 D+ ++ Sbjct: 183 DLFRR 187 >gi|254032046|ref|YP_001023796.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ10101] Length = 211 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 88/190 (46%), Gaps = 55/190 (28%) Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 SVF LI F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ E +K+ Sbjct: 26 SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIP-----GEKERKK 80 Query: 91 G---------FLGSFFIGILAAELIVCASNFMV-------------------FSAEGELS 122 G +G GILAAEL + ++ +E E Sbjct: 81 GEETGRIGTPAIGILIGGILAAELASAVPDSIIKNYELTNILSDRNRDKSGLIGSEKESI 140 Query: 123 RLVFK----------------------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 K G N+E IGKVLY Y Y + FILL++MIGA Sbjct: 141 TTGIKNNIETGYPYDYFDYFLTLNGSGGTNMEAIGKVLYINYYYAFILVSFILLVAMIGA 200 Query: 161 IVLMLRHRRD 170 IVL L+ + Sbjct: 201 IVLGLQSSDE 210 >gi|226227059|ref|YP_002761165.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27] gi|226090250|dbj|BAH38695.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27] Length = 168 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 5/157 (3%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +AI S+ L VT +NP+ + L+ AGL+++L A FV I ++VY GA++V F+ Sbjct: 13 SLLAIASALLFVTRKNPVPAALWLVNVMFALAGLYVMLDAPFVGTIQVLVYAGAIMVTFV 72 Query: 72 FIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 F++M+L++ EV++ R LGS +G+ ++ A + E +R N Sbjct: 73 FVVMLLNLGKTEVSDIRSLGTRLGSGVVGLALLANLLLALRQHIEVPEFSAAR----DNV 128 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 VE + L+T Y E++ +LL+++IGA+VL R Sbjct: 129 VEPVAAALFTDYLVAFELTSLVLLVAVIGAVVLAKRR 165 >gi|94985025|ref|YP_604389.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Deinococcus geothermalis DSM 11300] gi|94555306|gb|ABF45220.1| NADH dehydrogenase subunit J [Deinococcus geothermalis DSM 11300] Length = 197 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 27/205 (13%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F +A++ + + V RN +++ L+ ++ AGLF L A F+A ++VY GA++ Sbjct: 4 FIFLGALALVGAVITVAARNAVHAALGLVGTLLSVAGLFASLNAAFLAATQVIVYAGAIM 63 Query: 68 VFFLFIIMMLDIDIEVA--EP----RKKRGFLGSFFIGILAAELIVCASNFMVFS----- 116 V FLF+IM+L+ + ++ +P R+ G G G A + F+ Sbjct: 64 VLFLFVIMLLNANQPISGRDPVPFVRELAGIGGVLLAGAFA---------VLAFTYRDPR 114 Query: 117 --AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIK 172 AEG + +G N +G+VL T++ P E +LL++++GAI L+ R + D Sbjct: 115 PLAEGAAA---LQGGNAAPVGEVLLTRFLLPFEAVSILLLVAIVGAIALVQRPAAQPDGV 171 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 L ++PD + + G+ Sbjct: 172 TDAEGAALPTSPDRQPETLVPERGR 196 >gi|229072761|ref|ZP_04205961.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus F65185] gi|229193545|ref|ZP_04320490.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC 10876] gi|228589934|gb|EEK47808.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC 10876] gi|228710387|gb|EEL62361.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus F65185] Length = 162 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 89/161 (55%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAIVL ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLA---KKDEKEED 159 >gi|133900496|gb|ABO41414.1| NADH dehydrogenase subunit 6 [Maprounea guianensis] Length = 179 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFXDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI+ F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTGVKRQDIFRR 172 >gi|133900442|gb|ABO41387.1| NADH dehydrogenase subunit 6 [Endospermum moluccanum] Length = 179 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 87/170 (51%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVF-----SAEGELSRLVFKG-----N 129 I R S IG IL E+ N + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTASLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|220919432|ref|YP_002494736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter dehalogenans 2CP-1] gi|219957286|gb|ACL67670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter dehalogenans 2CP-1] Length = 168 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 90/153 (58%), Gaps = 6/153 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++F+ + ++ V+ R+P+Y+ +L+ AF AG+++LL A +A + ++VY Sbjct: 6 EQVTFWVFAIPLVATAIGVIMSRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILVYA 65 Query: 64 GAVIVFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+V FLF+IM+L + E + EPR+ +G+ + +L A L + + EL Sbjct: 66 GAVMVLFLFVIMLLSLGDEHLIKEPRRAMQLIGALGVVLLVAVLASAIAQ----ARTSEL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 + L V+ +G+VLYTQ+ P E++ +LL Sbjct: 122 ATLTADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154 >gi|196249744|ref|ZP_03148440.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. G11MC16] gi|196210620|gb|EDY05383.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. G11MC16] Length = 173 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 10/168 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + AI ++ + N ++ V +L+ F+ AGL++LL AEFVA++ +++Y GA+ Sbjct: 8 FFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVLIYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFF--IGILAAELIVC-ASNFMVFSAEGELSRL 124 + LF IM+ + E + G I +LA L V + F A+G Sbjct: 68 IIMLFAIMLTRHHADDKERQTTGGVWHRAVAAISVLAFGLAVYFGIRRLDFGADGS---- 123 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +N IGK LY+ Y P EI ILL+++IGAIVL ++D K Sbjct: 124 ALATDNAREIGKWLYSYYTIPFEIVSVILLVALIGAIVLA---KKDGK 168 >gi|56791562|gb|AAW30319.1| NADH dehydrogenase subunit 6 [Liriodendron tulipifera] Length = 177 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 S A++S +V +NP++ V I F + +GL LLLG +F AMI+ VV++GA+ F Sbjct: 1 LSSPALVSGLMVARAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAASF 60 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSRL 124 LF++MM +I I R S IG IL E+ N L Sbjct: 61 LFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFVLDNETIPLLPTHRNTTSLRYT 120 Query: 125 VFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 V G N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ Sbjct: 121 VHAGKVRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDV 177 >gi|9280598|gb|AAF86487.1|AF279440_1 NADH dehydrogenase subunit 6 [Lupinus angustifolius] Length = 205 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 11/176 (6%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVAHAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG 128 MM I I R S IG IL E+ N + + + + L V+ G Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAG 129 Query: 129 -----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 130 KVRSWTNLETLGNLLYTYYFVWFLVGSLILLVAMIGAIVLTMHRTTQVKRQDVFRR 185 >gi|193212952|ref|YP_001998905.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobaculum parvum NCIB 8327] gi|193086429|gb|ACF11705.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobaculum parvum NCIB 8327] Length = 173 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 5/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ + ++S+ VV +N IYS FSL+F F A L++ L A+F+A+ +VVYVG ++ Sbjct: 10 FYIFAAVTVVSAAFVVFSKNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVGGIL 69 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-F 126 V LF +M + + + + + + G++ L++ F ++ G + LV Sbjct: 70 VLLLFGVMFTNTIMS----TELKADVMNMVPGVILLFLMIAGMLFTFYTGGGWMPGLVQL 125 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 +G+ VE+IG ++Y P E+ +LL++++GA L + K Q Sbjct: 126 QGSVVESIGMETMSRYMLPFEMVSIVLLVALLGAAYLARYDKAQNKEQ 173 >gi|197124711|ref|YP_002136662.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. K] gi|196174560|gb|ACG75533.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. K] Length = 168 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 90/153 (58%), Gaps = 6/153 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++F+ + ++ V+ R+P+Y+ +L+ AF AG+++LL A +A + ++VY Sbjct: 6 EQVTFWVFAIPLVATAIGVIISRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILVYA 65 Query: 64 GAVIVFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+V FLF+IM+L + E + EPR+ +G+ + +L A L + + EL Sbjct: 66 GAVMVLFLFVIMLLSLGDEHLIKEPRRAMQLIGALGVVLLVAVLASAIAQ----ARTSEL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 + L V+ +G+VLYTQ+ P E++ +LL Sbjct: 122 ATLTADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154 >gi|323149050|ref|YP_004222818.1| NADH dehydrogenase subunit 6 [Vigna radiata] gi|308206756|gb|ADO19893.1| NADH dehydrogenase subunit 6 [Vigna radiata] Length = 205 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 11/176 (6%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRLVF----- 126 MM I I R S IG IL E+ N + + + L++ Sbjct: 70 MMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQINTTSLIYTVYAG 129 Query: 127 ---KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 130 KVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 185 >gi|229328270|ref|YP_002860283.1| NADH dehydrogenase subunit 6 [Megaceros aenigmaticus] gi|186695239|gb|ACC86806.1| NADH dehydrogenase subunit 6 [Nothoceros aenigmaticus] Length = 201 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 23/204 (11%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + S +A++S +NP++SV I F N +GL +LLG + AMI LVVYVGA Sbjct: 2 ILFSVPSSIALVSGVTATRAKNPVHSVLFSIPVFRNTSGLLVLLGLDPFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSF----------------FIGILAAELIVC 108 + V + +I I E+ E + +G +I IL +L Sbjct: 62 IAVSPSSVATTSNIKIAEIHENVLRYLPVGGITGLILLLEIFFIVDNDYIPILPTKLSTT 121 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + V++ + + N+E +G +LYT Y S FI L++MIGA VL + Sbjct: 122 YLTYTVYAGK------IQSWTNLETLGNLLYTTYFTSFLFSSFISLVAMIGATVLTMHRT 175 Query: 169 RDIKRQDISKQLESNPDNSIVMVK 192 +KRQD+ +Q + N+I ++ Sbjct: 176 TRVKRQDVFRQNARDFRNTIKKIR 199 >gi|86160614|ref|YP_467399.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Anaeromyxobacter dehalogenans 2CP-C] gi|85777125|gb|ABC83962.1| NADH dehydrogenase subunit J [Anaeromyxobacter dehalogenans 2CP-C] Length = 168 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 90/153 (58%), Gaps = 6/153 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++F+ + ++ V+ R+P+Y+ +L+ AF AG+++LL A +A + ++VY Sbjct: 6 EQVTFWVFAIPLVATAIGVIMSRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILVYA 65 Query: 64 GAVIVFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+V FLF+IM+L + E + EPR+ +G+ + +L A L + + EL Sbjct: 66 GAVMVLFLFVIMLLSLGDEHLIKEPRRAMQLIGALGVVLLVAVLASAIAQ----ARTSEL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 + L V+ +G+VLYTQ+ P E++ +LL Sbjct: 122 ATLAADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154 >gi|257852746|gb|ACV71385.1| NADH dehydrogenase subunit 6 [Soyauxia floribunda] Length = 178 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVFRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|56791574|gb|AAW30325.1| NADH dehydrogenase subunit 6 [Platanus occidentalis] Length = 177 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 89/177 (50%), Gaps = 21/177 (11%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ V FLF++ Sbjct: 6 ALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVV 65 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-----------GELSR 123 MM I I R S IG LI+ F +F E L Sbjct: 66 MMFHIQIAETHEEVLRYLPVSGIIG-----LILWWEMFFIFFNETIPLLPTQRNTTSLRY 120 Query: 124 LVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 V G N+E +G +LYT Y + ILL++MIGAIVL + +KRQD Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYGVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQD 177 >gi|257852608|gb|ACV71316.1| NADH dehydrogenase subunit 6 [Hevea sp. Gillespie 4272] gi|257852610|gb|ACV71317.1| NADH dehydrogenase subunit 6 [Hura crepitans] gi|257852614|gb|ACV71319.1| NADH dehydrogenase subunit 6 [Manihot grahamii] Length = 178 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900424|gb|ABO41378.1| NADH dehydrogenase subunit 6 [Croton alabamensis var. alabamensis] Length = 179 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129 I R S IG IL E+ I+ + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDEETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRR 172 >gi|228903768|ref|ZP_04067885.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis IBL 4222] gi|228968416|ref|ZP_04129409.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228791275|gb|EEM38884.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228855857|gb|EEN00400.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis IBL 4222] Length = 162 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159 >gi|133900416|gb|ABO41374.1| NADH dehydrogenase subunit 6 [Cespedesia spathulata] Length = 179 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV LI F + +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFLILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +MV++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|296124099|ref|YP_003631877.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces limnophilus DSM 3776] gi|296016439|gb|ADG69678.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces limnophilus DSM 3776] Length = 239 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 96/182 (52%), Gaps = 17/182 (9%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ L FY+ + A++ L+ T RNP+Y+ A + GLF++ A F+A +T++V Sbjct: 58 LVRDLLFYMAAGTAVLGGLLMTTQRNPVYAALWFAVATLGVCGLFVINSAPFLAAVTIIV 117 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPR-KKRGF----LGSFFIGILAAELIVCASNFMVFS 116 Y GA++V F+F+IM+ + R ++ F LG +G + L+ F S Sbjct: 118 YAGAIVVTFVFVIMLAQQEQGSGYDRIPQQPFLATVLGCLLVGTM---LLGIEKTFGPES 174 Query: 117 AEGELSRLVFKGNN--VEN-------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + R ++ VEN +G+ L+T Y + +E++G +LL++ IGAI + R Sbjct: 175 SRLSVDRTALHVSSLPVENDLGSPGGVGRSLFTDYLFAVELAGTVLLVATIGAIAIAPRR 234 Query: 168 RR 169 + Sbjct: 235 PQ 236 >gi|133900380|gb|ABO41356.1| NADH dehydrogenase subunit 6 [Acridocarpus natalitius] Length = 179 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 23/178 (12%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 ALMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGEL 121 I I EV G +G F I +L + + + V++ + Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK--- 117 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 ---VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900396|gb|ABO41364.1| NADH dehydrogenase subunit 6 [Bischofia javanica] Length = 179 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|88809900|ref|ZP_01125406.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7805] gi|88786284|gb|EAR17445.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7805] Length = 199 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 28/183 (15%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S + ++ + VV + N +YS F L F+ AGL+LLL A FVA ++VYV Sbjct: 8 QLISFLVLSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI---VCASNFMVFS---- 116 GAV V LF IM+++ KR L GI L+ VCA F++ + Sbjct: 68 GAVNVLILFAIMLVN----------KREDLAP-IPGIAVRRLLSGGVCAGLFVLLTRVVL 116 Query: 117 ----AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 AEG + +G + IG+ L+T Y P E++ +LL++MIGAIVL RRD++ Sbjct: 117 TTPWAEG--PEPIGEGATIR-IGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVQ 170 Query: 173 RQD 175 D Sbjct: 171 AVD 173 >gi|65329286|gb|AAY42125.1| Nqo10 [Rhodothermus marinus] Length = 170 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 6/168 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L F+L + AI ++ ++ RNP+ S L+ AGL+L L A F+ +I +++Y G Sbjct: 4 QLLFFLLAVTAIAAALGMLIARNPVSSALWLVLNLFCIAGLYLTLQASFLGVIQVLIYAG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIG--ILAAELIVCASNFMVFSAEGEL 121 A++V FLF+IM+L+++ + PR+ G + +F + +LA + V A V Sbjct: 64 AIMVLFLFVIMLLNLE-ALPHPRQIDWGKVLAFVVTMIVLAQLVYVVALGLDVLPTFVAT 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + +G+ L T+Y PL++ G +LL + IGA+ ML RR Sbjct: 123 TEQAAVTGSAQALGRELLTRYIMPLQVIGILLLAATIGAV--MLAKRR 168 >gi|229112706|ref|ZP_04242242.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock1-15] gi|228670838|gb|EEL26146.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock1-15] Length = 162 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159 >gi|330339541|ref|YP_004376741.1| NADH dehydrogenase subunit 6 [Corallium konojoi] gi|328750582|dbj|BAK18843.1| NADH dehydrogenase subunit 6 [Corallium konojoi] Length = 184 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 17/188 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF + S + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MNSLFI-MISLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + FLF+IM+ + +P K S F+ + +I + + S + + Sbjct: 60 VGAIAILFLFVIML------IQQPNKVDYQDHSHFLPV-GLSVIFLFYSLLTNSPKYISN 112 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR---------HRRDIKR 173 ++ N+ IG LYT Y + ++ +LL++M+GAI+L + H R Sbjct: 113 PVIGSRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILLAKQPSTPSLYDSHVETRSR 172 Query: 174 QDISKQLE 181 QD+ Q+ Sbjct: 173 QDLFLQIS 180 >gi|123965422|ref|YP_001010503.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9515] gi|123199788|gb|ABM71396.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9515] Length = 199 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 20/185 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S + I+ + V+ + + +YS F L F++ AGL+LLL A FVA ++VYV Sbjct: 8 QIICFSVLSLVVIVGALGVILLDSIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEP----RKKRGFLGSFFIGILAAELIVCASNFMVF---- 115 GAV V +F IM+++ E +P +R S + +L+ + V SN Sbjct: 68 GAVNVLIIFAIMLVN-KKEDLKPINNINSRRIISTSICLTLLSLLIRVDLSNVWSLADPN 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 S+ GE S + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +D Sbjct: 127 SSIGEESTI--------RIGEHLFSDYLLPFEVASVLLLMAMIGAIVL---ARRDVFNKD 175 Query: 176 ISKQL 180 IS L Sbjct: 176 ISTGL 180 >gi|133900524|gb|ABO41428.1| NADH dehydrogenase subunit 6 [Petalostigma pubescens] Length = 179 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRR 172 >gi|257852708|gb|ACV71366.1| NADH dehydrogenase subunit 6 [Eucryphia milliganii] Length = 178 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPIPVFRETSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|124024944|ref|YP_001014060.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL1A] gi|123960012|gb|ABM74795.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. NATL1A] Length = 200 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 94/186 (50%), Gaps = 23/186 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + S + + S VV + N +YS F L F+ AGL+LLL A FVA ++VYVGAV Sbjct: 12 FLILSAIIVSGSLAVVLLENIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQILVYVGAVN 71 Query: 68 VFFLFIIMMLDIDIEVAEP----RKKR----GFLGSFFIGILAAELIVCASNFMVFSAEG 119 V LF IM+++ + E +P R ++ G G I +L I N ++ G Sbjct: 72 VLILFAIMLVN-NKEKLKPIKGLRTRKLISGGVCGGLLILLLRVS-ITTKWNLPGPTSIG 129 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDIS 177 E E IG+ L+T Y P E++ +LL++MIGAIVL RRD I DI+ Sbjct: 130 E--------EATEIIGEHLFTDYLLPFELASILLLMAMIGAIVL---ARRDVSISTADIN 178 Query: 178 KQLESN 183 N Sbjct: 179 DLKNQN 184 >gi|152977481|ref|YP_001376998.1| NADH dehydrogenase subunit J [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026233|gb|ABS24003.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus cytotoxicus NVH 391-98] Length = 174 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ SF A++ ++ V ++ + +L+F F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSFTAVMGGVFMLNVTKVMHMMLALVFTFLSIAGLYFLLAAEFIGVAQILIYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ D E E R + F +L ++ A + + F+ + L Sbjct: 68 IIMIFGIMLTRHDAE-NESRISLRKIIVFLAVMLFGTVMYFAVHNIDFANQNTQDILPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 N IG +LY++Y P E++ ILL++++GAIVL ++D ++ D Sbjct: 127 EQNTLQIGTLLYSKYVIPFELASVILLVALVGAIVLA---KKDEEKGD 171 >gi|87123594|ref|ZP_01079445.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Synechococcus sp. RS9917] gi|86169314|gb|EAQ70570.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Synechococcus sp. RS9917] Length = 200 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 19/182 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + + +I + VV + N +YS F L F+ AGL+LLL A FVA ++VYV Sbjct: 8 QLICFVALAAVVVIGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAE----PRKK---RGFLGSFFIGILAAELIVCASNFMVFS 116 GAV V LF IM+++ ++A P ++ G F +L +I + Sbjct: 68 GAVNVLILFAIMLVNKREDLAPIQGLPIRRLLSAGVCAGLF-ALLVRVVITTPWAVPGPA 126 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 A GE E IG+ L+T Y P E++ +LL++MIGAIVL RRD++ D+ Sbjct: 127 AIGE--------GATERIGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVQSTDL 175 Query: 177 SK 178 Sbjct: 176 GT 177 >gi|133900570|gb|ABO41451.1| NADH dehydrogenase subunit 6 [Vismia sp. Miller et al. 9313] Length = 179 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI LVV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFLVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|228942440|ref|ZP_04104978.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955540|ref|ZP_04117544.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961557|ref|ZP_04123167.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228975373|ref|ZP_04135929.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982009|ref|ZP_04142303.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis Bt407] gi|229050965|ref|ZP_04194515.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH676] gi|229130545|ref|ZP_04259501.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-Cer4] gi|229147834|ref|ZP_04276176.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST24] gi|229153458|ref|ZP_04281636.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1550] gi|228630062|gb|EEK86713.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1550] gi|228635662|gb|EEK92150.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST24] gi|228652884|gb|EEL08766.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-Cer4] gi|228722423|gb|EEL73818.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH676] gi|228777770|gb|EEM26043.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis Bt407] gi|228784355|gb|EEM32378.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798175|gb|EEM45178.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804162|gb|EEM50777.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817281|gb|EEM63368.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 162 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159 >gi|229181542|ref|ZP_04308868.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus 172560W] gi|228601910|gb|EEK59405.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus 172560W] Length = 162 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159 >gi|257852602|gb|ACV71313.1| NADH dehydrogenase subunit 6 [Conceveiba martiana] Length = 178 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172 >gi|133900382|gb|ABO41357.1| NADH dehydrogenase subunit 6 [Androstachys johnsonii] gi|133900434|gb|ABO41383.1| NADH dehydrogenase subunit 6 [Dissiliaria muelleri] gi|133900506|gb|ABO41419.1| NADH dehydrogenase subunit 6 [Micrantheum hexandrum] Length = 179 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|58578649|ref|YP_203369.1| NADH dehydrogenase subunit 6 [Mortierella verticillata] gi|57545582|gb|AAW51706.1| NADH dehydrogenase subunit 6 [Mortierella verticillata] Length = 200 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 33/199 (16%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ L +F +++S+ LV+T R+P+ SV LI F+N AG +LLG F+A+ ++VY Sbjct: 1 MNNILLDLLTFTSVLSAILVITARSPVISVLFLIAVFINIAGYLILLGVNFIALSYIMVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLG-------SFFI------------- 98 +GA+ + FLF+IMML++ + E+ K L S+ I Sbjct: 61 IGAIAILFLFVIMMLNVRLTELHEIGSDYSKNFPLAIVVAASLSYIILSNSLTKSIDQIY 120 Query: 99 ---------GILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 L + + N++ + + ++ IG ++Y+ Y L + Sbjct: 121 LITALFDKLNFLNSGINTTTDNYINIGYNTIYNNIFVNYEQIQAIGNIMYSSYGLYLILC 180 Query: 150 GFILLLSMIGAIVLMLRHR 168 F+LLL+M+G I++ L + Sbjct: 181 SFVLLLAMLGPIIITLDKK 199 >gi|257852612|gb|ACV71318.1| NADH dehydrogenase subunit 6 [Lasiocroton bahamensis] gi|257852622|gb|ACV71323.1| NADH dehydrogenase subunit 6 [Spathiostemon javensis] Length = 178 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172 >gi|116073962|ref|ZP_01471224.1| NADH dehydrogenase subunit J [Synechococcus sp. RS9916] gi|116069267|gb|EAU75019.1| NADH dehydrogenase subunit J [Synechococcus sp. RS9916] Length = 200 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 11/178 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + + + I + VV + N +YS F L F+ AGL+LLL A FVA ++VYV Sbjct: 8 QLICFLVLASVVAIGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPR---KKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GAV V LF IM+++ ++A + +R G G+ A L+V + ++ G Sbjct: 68 GAVNVLILFAIMLVNKREDLAPIKGLQTRRLISGGVCAGLFA--LLVRVALTTPWAVPGP 125 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + + IG+ L+T Y P E++ +LL++MIGAIVL RRD++ D+ Sbjct: 126 AA---VGEDATVRIGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVQATDLGT 177 >gi|257852674|gb|ACV71349.1| NADH dehydrogenase subunit 6 [Tetracoccus dioicus] Length = 178 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852662|gb|ACV71343.1| NADH dehydrogenase subunit 6 [Paropsia madagascariensis] Length = 178 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKGN----- 129 I R S IG IL E+ I+ + + + + + L V+ G+ Sbjct: 63 IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGSVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRR 172 >gi|332830197|gb|EGK02825.1| hypothetical protein HMPREF9455_01075 [Dysgonomonas gadei ATCC BAA-286] Length = 167 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 13/173 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S+ FY+ + + I + L V +NPI+S +I F + +G FLLL A F+A++ +VVY Sbjct: 1 MISVIFYILAAITIGTGILTVISKNPIHSAVYMIICFFSISGHFLLLNALFLAVVNIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK-----RGFLGSFFIGI-LAAELIVCASNFMVFS 116 GA++V LF +M++++ E EP+KK + S +GI L A LI A + Sbjct: 61 AGAIMVLLLFTLMLMNLS-EQHEPKKKVISRVAATVSSCLMGIVLLAALIKSAPVVETYK 119 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 AEG L ++ N+ IG+VL +Y P E + +L+ +MIGA+++ + ++ Sbjct: 120 AEG----LDYQSVNI--IGQVLLDEYLVPFEFASILLITAMIGAVLISKKEKK 166 >gi|291285966|ref|YP_003502782.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Denitrovibrio acetiphilus DSM 12809] gi|290883126|gb|ADD66826.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Denitrovibrio acetiphilus DSM 12809] Length = 170 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 96/171 (56%), Gaps = 17/171 (9%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ ++ F++ A++S+ ++T NP++S ++ F + AG+F+ L AEF+A I ++V Sbjct: 4 ILANIGFWVLGITAVVSALFLITRENPVHSALWMLLTFFSVAGIFVQLDAEFIAAIQVMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF---IGILAAELIVCASNFMVFSAE 118 Y GA++V ++F++M+L+ K GF+ F +G + A ++ + A+ Sbjct: 64 YAGAILVLYMFVVMLLN--------PKSNGFIKMPFKVVLGGIVAFIVFLQIVMTLMGAD 115 Query: 119 ----GELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +L+ + N NV+ G L+T Y P EI +LL++MIGAIV+ Sbjct: 116 IIKTAKLTGIADPHNFGNVKMFGIDLFTTYLVPFEIVSIMLLVAMIGAIVI 166 >gi|133900440|gb|ABO41386.1| NADH dehydrogenase subunit 6 [Elatine triandra] Length = 179 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|192293782|ref|YP_001994421.1| NADH dehydrogenase subunit 6 [Acanella eburnea] gi|148964837|gb|ABR19859.1| NADH dehydrogenase subunit 6 [Acanella eburnea] Length = 183 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 94/161 (58%), Gaps = 8/161 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MNSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + FLF+IM++ +P K S F+ + +I + + S + + Sbjct: 60 VGAIAILFLFVIMLIQ------QPNKVDSQDHSHFLPV-GLSVIFLFYSLLTNSPKYISN 112 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++ N+ IG LYT Y + ++ +LL +M+GAI+L Sbjct: 113 PVIGSRTNIXAIGSHLYTTYYELVLVASLVLLXAMVGAILL 153 >gi|257852728|gb|ACV71376.1| NADH dehydrogenase subunit 6 [Guaiacum sanctum] Length = 178 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|257852580|gb|ACV71302.1| NADH dehydrogenase subunit 6 [Bhesa robusta] Length = 178 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI+ F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++M+GAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMMGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900518|gb|ABO41425.1| NADH dehydrogenase subunit 6 [Parnassia grandifolia] Length = 179 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F + +L + + +MV++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETLPLLPTQRNTTSLRYMVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDVFRR 172 >gi|268316804|ref|YP_003290523.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodothermus marinus DSM 4252] gi|262334338|gb|ACY48135.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodothermus marinus DSM 4252] Length = 170 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 96/171 (56%), Gaps = 12/171 (7%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L F+L + AI ++ ++ RNP+ S L+ AGL+L L A F+ +I +++Y G Sbjct: 4 QLLFFLLAVTAIAAALGMLIARNPVSSALWLVLNLFCIAGLYLTLQASFLGVIQVLIYAG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIG--ILAAELIVCASNFMV---FSAE 118 A++V FLF+IM+L+++ + PR+ G + +F + +LA + V A V F A Sbjct: 64 AIMVLFLFVIMLLNLE-ALPHPRQIDWGKVLAFVVTMIVLAQLVYVVALGLDVLPTFVAT 122 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 E + + + + +G+ L T+Y PL++ G +LL + IGA+ ML RR Sbjct: 123 PEQAAVT---GSAQALGRELLTRYIMPLQVIGILLLAATIGAV--MLAKRR 168 >gi|133900444|gb|ABO41388.1| NADH dehydrogenase subunit 6 [Erythrococca sp. Cheek s.n.] Length = 179 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172 >gi|133900520|gb|ABO41426.1| NADH dehydrogenase subunit 6 [Passiflora coccinea] Length = 179 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKGN----- 129 I R S IG IL E+ I+ + + + + + L V+ G+ Sbjct: 63 IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGSVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRR 172 >gi|133900466|gb|ABO41399.1| NADH dehydrogenase subunit 6 [Homalanthus populneus] Length = 179 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900426|gb|ABO41379.1| NADH dehydrogenase subunit 6 [Ctenolophon englerianus] Length = 179 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852694|gb|ACV71359.1| NADH dehydrogenase subunit 6 [Tricliceras longipedunculatum] Length = 178 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129 I R S IG IL E+ I+ + + + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLGYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRR 172 >gi|133900392|gb|ABO41362.1| NADH dehydrogenase subunit 6 [Bergia texana] Length = 179 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900508|gb|ABO41420.1| NADH dehydrogenase subunit 6 [Microdesmis puberula] Length = 179 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTSQVKRQDVFRR 172 >gi|224020958|ref|YP_002608191.1| NADH dehydrogenase subunit 6 [Carica papaya] gi|170522370|gb|ACB20480.1| NADH dehydrogenase subunit 6 [Carica papaya] Length = 205 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 95/182 (52%), Gaps = 23/182 (12%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++ Sbjct: 10 ALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVV 69 Query: 75 MML-----DIDIEVAEPRKKRGFLG------SFF------IGILAAELIVCASNFMVFSA 117 MM +I EV G +G FF I +L + + + V++ Sbjct: 70 MMFHIQKAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 129 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ Sbjct: 130 K------VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVF 183 Query: 178 KQ 179 ++ Sbjct: 184 RR 185 >gi|133900574|gb|ABO41453.1| NADH dehydrogenase subunit 6 [Leea guineensis] Length = 179 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVSRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129 I R S IG IL E+ N + + + + L V Sbjct: 63 IAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAEKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTQVKRQDIFRR 172 >gi|189095616|ref|YP_001936200.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. BAL208-1] gi|148540946|gb|ABQ86195.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. BAL208-1] Length = 183 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 95/161 (59%), Gaps = 8/161 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + FLF+IM+ + +P K S F+ + +I + + S + + Sbjct: 60 VGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFLFYSLLTNSPKYISN 112 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++ N+ IG LYT Y + ++ +LL++M+GAI+L Sbjct: 113 PVIGSRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILL 153 >gi|133900420|gb|ABO41376.1| NADH dehydrogenase subunit 6 [Clusia rosea] Length = 178 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852638|gb|ACV71331.1| NADH dehydrogenase subunit 6 [Cyrillopsis paraensis] Length = 178 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|47569789|ref|ZP_00240460.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10), putative [Bacillus cereus G9241] gi|47553531|gb|EAL11911.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10), putative [Bacillus cereus G9241] Length = 174 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 4/168 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ Sbjct: 8 FFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAIT 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + +F IM+ + E R ++ FF + ++ A N + F+ E L Sbjct: 68 IIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLH 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 N IG +LY++Y P E+ ILL++++GAI+L ++D K +D Sbjct: 127 EKNTLQIGTLLYSKYIIPFELISVILLVALVGAIILA---KKDEKEED 171 >gi|163781770|ref|ZP_02176770.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] gi|159882990|gb|EDP76494.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] Length = 177 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 11/178 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F +FS AIIS V+T NPIY + L+ A + AG+F GAE V + L++Y A+ Sbjct: 7 FLIFSAWAIISGVGVITFTNPIYVILWLLSALIAVAGIFFTAGAELVGALQLLIYAVAIA 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 VF++F++ + + + + R G L + +L E+ + + S EG+ + Sbjct: 67 VFYVFVLTAVPWEKAIKKGSHYRMEGVLSLPLVVLLYVEMAIVFFLGITASPEGKFRAFI 126 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 K N E +G +L+T+Y + E+ +LL+ MIGA++ I R++ S+ E N Sbjct: 127 EKLGNTEVVGSILFTRYFFAFEVVSLVLLIGMIGAVL--------IGRKE-SQTYEDN 175 >gi|257852740|gb|ACV71382.1| NADH dehydrogenase subunit 6 [Vitis aestivalis] Length = 178 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129 I R S IG IL E+ N + + + + L V Sbjct: 63 IAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAEKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|23268295|gb|AAN11292.1| NADH dehydrogenase subunit 6 [Lupinus albus] Length = 205 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 11/176 (6%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++ Sbjct: 10 ALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVV 69 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG 128 M+ I I R S IG IL E+ N + + + + L V+ G Sbjct: 70 MLFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAG 129 Query: 129 -----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 130 KVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDVFRR 185 >gi|182412301|ref|YP_001817367.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus terrae PB90-1] gi|177839515|gb|ACB73767.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus terrae PB90-1] Length = 169 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S F +F +A+I++ V RN + + + + + GLF++L A +A + L+VY Sbjct: 1 MASFLFNVFVLLAVIAALGAVLNRNTVNAAMCFMLSLIGVTGLFVMLEAYLLAFVLLLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 GAV FLFI+M+LD PR+ G + + +LA ++ ++ A G Sbjct: 61 AGAVAALFLFIVMLLDTHTTKVRPRRPLGMFATLVSVALLAVGVLT------LYQAPGLA 114 Query: 122 SRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + V G +++ L+T Y P++I GF+LL++M+G IVL Sbjct: 115 AAPVPTAVGASLKVYAYELFTTYLLPVQIVGFLLLIAMLGVIVL 158 >gi|262376769|ref|ZP_06069997.1| NADH dehydrogenase subunit I J [Acinetobacter lwoffii SH145] gi|262308479|gb|EEY89614.1| NADH dehydrogenase subunit I J [Acinetobacter lwoffii SH145] Length = 173 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 82/145 (56%), Gaps = 19/145 (13%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+FL++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTVRVVTNANPVHALLSLIVSLLAVAGMFLIVGAPFAGALEVIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNFMVFSAEG 119 V F+F++MML++ + E +K L SF IG++ V +++ Sbjct: 65 VLFVFVVMMLNLGEQTVEQERKWLTSSAWAYPALMSFLIGLVLV---------WVLNSDY 115 Query: 120 ELSRLVFKGNNV--ENIGKVLYTQY 142 + LV V + +G+ L+TQY Sbjct: 116 TQASLVMGTEMVGPKAVGQALFTQY 140 >gi|255037785|ref|YP_003088406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter fermentans DSM 18053] gi|254950541|gb|ACT95241.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter fermentans DSM 18053] Length = 173 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 20/177 (11%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+++ FY+FS + +++ ++ RN IY F+L AF+ A L++L GA+F+A+ +++Y Sbjct: 1 MEAIIFYIFSALTLLAGLFILVSRNLIYGAFALFLAFLGVAALYVLAGADFLAVSQIMIY 60 Query: 63 VGAVIVFFLFIIMMLDI-----------DIEVAEPRKKRGFL-GSFFIGILAAELIVCAS 110 VG ++V +F IM+ ++V R+ G L G F G+L ++ +S Sbjct: 61 VGGILVLLIFGIMLTQKREKSDDSTRHNRVDVPITRRIWGVLAGVGFFGLLVK--VILSS 118 Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +F + AE + + + IG L T + P E++ +LL+++IGA L L Sbjct: 119 DFAMAGAE------MSTKSTIRTIGVELMTSHLLPFEVAAILLLVALIGAAYLALNR 169 >gi|229105886|ref|ZP_04236512.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-28] gi|229118790|ref|ZP_04248140.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock1-3] gi|228664660|gb|EEL20152.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock1-3] gi|228677545|gb|EEL31796.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-28] Length = 162 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + FS E L N I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159 >gi|133900402|gb|ABO41367.1| NADH dehydrogenase subunit 6 [Byrsonima crassifolia] Length = 179 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900386|gb|ABO41359.1| NADH dehydrogenase subunit 6 [Atuna racemosa] gi|133900418|gb|ABO41375.1| NADH dehydrogenase subunit 6 [Chrysobalanus icaco] gi|133900464|gb|ABO41398.1| NADH dehydrogenase subunit 6 [Hirtella bicornis] Length = 179 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900568|gb|ABO41450.1| NADH dehydrogenase subunit 6 [Vantanea guianensis] Length = 178 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852604|gb|ACV71314.1| NADH dehydrogenase subunit 6 [Dalechampia spathulata] Length = 178 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQ++ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTRVKRQELFRR 172 >gi|133900430|gb|ABO41381.1| NADH dehydrogenase subunit 6 [Dicella nucifera] gi|133900494|gb|ABO41413.1| NADH dehydrogenase subunit 6 [Malpighia stevensii] gi|133900560|gb|ABO41446.1| NADH dehydrogenase subunit 6 [Thryallis longifolia] Length = 179 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI+ F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|219847957|ref|YP_002462390.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus aggregans DSM 9485] gi|219542216|gb|ACL23954.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus aggregans DSM 9485] Length = 168 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + + +AI+ + +V RN ++S L+ F A LFLLL A F+ I L VY Sbjct: 1 MELILFLITALIAIVGAVAMVVSRNAVHSALFLLLNFAAIAVLFLLLHAPFLFAIQLTVY 60 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 GA++V FLF++M+L + +E A R ++ + +L ++V +G Sbjct: 61 AGAIMVLFLFVVMLLGAEKVEDAPDRIAWQQPLALVLGLALLVIAVVVGLGGATTPPPDG 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 E + + ++G +L+T Y P E++GFILL++++G +VL R R+ Sbjct: 121 E---ALVPFTDPRSLGGLLFTDYLLPFEVTGFILLIAVVGVVVLSQRGRK 167 >gi|34556908|ref|NP_906723.1| NADH dehydrogenase subunit J [Wolinella succinogenes DSM 1740] gi|34482623|emb|CAE09623.1| NADH OXIDOREDUCTASE I [Wolinella succinogenes] Length = 190 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 9/192 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLF+ ++ +VVT N ++++ +L + + F +LGAEF+ + ++VY Sbjct: 3 ETIAFYLFAALSASMFLIVVTTNNVLHALSALAAGMIFISAFFFMLGAEFLGVAQIIVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+ + F +M D + E + R L + L++ + F+ S + Sbjct: 63 GAVMALYAFGMMFFDSSKAIKEKEENRWVLWVLIGIVTLLLLVILGAPFIHLSLDAR--H 120 Query: 124 LVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +G N E IG VL+TQY P E++ +LL++MI IVL K+ D S L S Sbjct: 121 PIPEGVGNTEAIGYVLFTQYLVPFELAAVMLLVAMIAGIVL------AGKKMDQSLTLMS 174 Query: 183 NPDNSIVMVKVK 194 + + I++ K K Sbjct: 175 DEEAEILLKKTK 186 >gi|133900472|gb|ABO41402.1| NADH dehydrogenase subunit 6 [Hybanthus concolor] Length = 179 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFCNISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852584|gb|ACV71304.1| NADH dehydrogenase subunit 6 [Licania michauxii] Length = 178 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900512|gb|ABO41422.1| NADH dehydrogenase subunit 6 [Neoscortechinia kingii] Length = 179 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|319650856|ref|ZP_08004993.1| hypothetical protein HMPREF1013_01599 [Bacillus sp. 2_A_57_CT2] gi|317397454|gb|EFV78155.1| hypothetical protein HMPREF1013_01599 [Bacillus sp. 2_A_57_CT2] Length = 173 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 97/171 (56%), Gaps = 11/171 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F + +A+I L++ + ++ V +L+F FV+ AG+++LL AEF+A + +++Y GA Sbjct: 8 LAFMFLALVAVIGGVLLLNLTKVVHMVVALVFTFVSIAGIYVLLSAEFLAAVQILIYSGA 67 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + + LF IM+ + + +EP+ R L + A + + N + SA +L Sbjct: 68 ITIIMLFGIMLTRHN-DTSEPKTGRFRKLLLFLGVLGFAFAVYIGIYNLDLPSAPNDLHV 126 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 NN E IG LY+++ P E++ +LL+++IG+IVL +RD +++ Sbjct: 127 -----NNTEQIGIELYSKFIIPFEVTSVLLLVALIGSIVLA---KRDDEKE 169 >gi|133900478|gb|ABO41405.1| NADH dehydrogenase subunit 6 [Irvingia malayana] gi|133900482|gb|ABO41407.1| NADH dehydrogenase subunit 6 [Klainedoxa gabonensis] Length = 179 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI+ F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|318040628|ref|ZP_07972584.1| NADH:ubiquinone oxidoreductase subunit J [Synechococcus sp. CB0101] Length = 199 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 97/181 (53%), Gaps = 17/181 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S + I + VV + N +YS F L F++ AGL+LLL A FVA ++VYV Sbjct: 8 QLICFTVLSAVVAIGALGVVLLPNIVYSAFLLGGVFLSVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAE-P--RKKRGFLGSFFIGILAAELIVC-ASNFMVFSAE- 118 GAV V LF IM+++ ++A P +R G+ G+ A L V + + E Sbjct: 68 GAVNVLILFAIMLVNKKEDLAAIPGLAVRRLLSGAVCAGLFALLLRVAFTTPWATPGPEP 127 Query: 119 -GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 GE + + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ DIS Sbjct: 128 VGEEATI--------RIGEHLFSDYLLPFELASVLLLMAMIGAIVL---ARRDVLSADIS 176 Query: 178 K 178 Sbjct: 177 T 177 >gi|262373367|ref|ZP_06066646.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter junii SH205] gi|262313392|gb|EEY94477.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter junii SH205] Length = 173 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 58/82 (70%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F A + ++VY GA++ Sbjct: 5 FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAAALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ E E K Sbjct: 65 VLFVFVVMMLNLGQETVEQESK 86 >gi|300864217|ref|ZP_07109101.1| NADH dehydrogenase subunit J [Oscillatoria sp. PCC 6506] gi|300337791|emb|CBN54247.1| NADH dehydrogenase subunit J [Oscillatoria sp. PCC 6506] Length = 209 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 28/193 (14%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F L + M I ++ VV N +YS F L F++ AG++LLL A+FVA +++YV Sbjct: 8 QIVSFGLLAVMMIAAALGVVLFSNIVYSAFLLAGVFMSIAGIYLLLNADFVAAAQVLIYV 67 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----M 113 GAV V LF IM+++ I A RK AA +VC + F M Sbjct: 68 GAVNVLILFAIMLVNKREDFRAISNAWVRK-------------AATAVVCVALFALLGTM 114 Query: 114 VFSAEGELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 V S +S +++ IGK +T + P E++ LL++M+GAI+L RRD Sbjct: 115 VLSTPWAISTATLPAGESSIVVIGKHFFTDFLLPFELASVFLLMAMVGAIIL---ARRDY 171 Query: 172 KRQDISKQLESNP 184 +I+ Q P Sbjct: 172 LPDEIAGQPLKQP 184 >gi|257852732|gb|ACV71378.1| NADH dehydrogenase subunit 6 [Cucumis sativus] Length = 180 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y+ +S ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTM-HRTTHSAVKRQDVFRR 174 >gi|261820800|ref|YP_003258906.1| NADH dehydrogenase subunit J [Pectobacterium wasabiae WPP163] gi|261604813|gb|ACX87299.1| NADH dehydrogenase (quinone) [Pectobacterium wasabiae WPP163] Length = 186 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 16/183 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +AI+++ V+T NP++++ ++ + + AG+F LGA F ++++VY GA++ Sbjct: 5 FYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ V E ++R +L S +IG IL+ L+V N ++ L Sbjct: 65 VLFVFVVMMLNLGNSVEE--QERNWLKPSVWIGPSILSLALLVIVVNAIL-----SLKEQ 117 Query: 125 VFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G VE +G L+ Y +E++ +LL +V+ R+ KR D+ + + Sbjct: 118 GITGTPVEAKAVGISLFGPYVLAVELASMLLL----AGLVVAFHIGREDKRGDVVNKEGA 173 Query: 183 NPD 185 N D Sbjct: 174 NQD 176 >gi|133900486|gb|ABO41409.1| NADH dehydrogenase subunit 6 [Leonia glycycarpa] gi|133900546|gb|ABO41439.1| NADH dehydrogenase subunit 6 [Rinorea pubiflora] Length = 179 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852574|gb|ACV71299.1| NADH dehydrogenase subunit 6 [Bonnetia sessilis] Length = 178 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-EVAEPRKK----RGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I E+ E + G +G F I +L + + V++ + Sbjct: 63 IAEIHESVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLQYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + G ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFFLQGLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|148240625|ref|YP_001226012.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7803] gi|147849164|emb|CAK24715.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 7803] Length = 199 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 28/183 (15%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S + ++ + VV + N +YS F L F+ AGL+LLL A FVA ++VYV Sbjct: 8 QLISFLVLSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI---VCASNFMVFS---- 116 GAV V LF IM+++ KR L GI L+ VCA F++ + Sbjct: 68 GAVNVLILFAIMLVN----------KREDLAP-IPGIAVRRLLSGGVCAGLFVLLTRVVL 116 Query: 117 ----AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 A+G + +G + IG+ L+T Y P E++ +LL++MIGAIVL RRD++ Sbjct: 117 TTPWAQG--PEPIGEGATIR-IGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVQ 170 Query: 173 RQD 175 D Sbjct: 171 AVD 173 >gi|133900516|gb|ABO41424.1| NADH dehydrogenase subunit 6 [Ostodes paniculata] Length = 179 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHKTTRVKRQDVFRR 172 >gi|227112319|ref|ZP_03825975.1| NADH dehydrogenase subunit J [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227326158|ref|ZP_03830182.1| NADH dehydrogenase subunit J [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 186 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 16/183 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +AI+++ V+T NP++++ ++ + + AG+F LGA F ++++VY GA++ Sbjct: 5 FYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ V E ++R +L S +IG IL+ L+V N ++ L Sbjct: 65 VLFVFVVMMLNLGNSVEE--QERNWLKPSVWIGPSILSLALLVIVVNAIL-----SLKEQ 117 Query: 125 VFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G VE +G L+ Y +E++ +LL +V+ R+ KR D+ + + Sbjct: 118 GITGTPVEAKAVGISLFGPYVLAVELASMLLL----AGLVVAFHIGREDKRGDVVSKEGA 173 Query: 183 NPD 185 N D Sbjct: 174 NQD 176 >gi|67920417|ref|ZP_00513937.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Crocosphaera watsonii WH 8501] gi|67857901|gb|EAM53140.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Crocosphaera watsonii WH 8501] Length = 236 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 28/180 (15%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + II++ VV + N +YS F L F++ +G+++LL A+FVA +++Y Sbjct: 35 VQIISFAILAGLVIITALGVVLLENIVYSAFLLGGVFISISGIYILLNADFVAAAQVLIY 94 Query: 63 VGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMV----- 114 VGAV V LF IM+++ + + P +RG A +VCA F + Sbjct: 95 VGAVNVLILFAIMLVNKKQDYSSIPTPWIRRG-----------ATALVCAGLFALLGTMV 143 Query: 115 ----FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +S E L+ N V IGK ++ + P E++ +LL++M+GAIVL RRD Sbjct: 144 LITPWSIESNAPGLI--ENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVL---ARRD 198 >gi|133900458|gb|ABO41395.1| NADH dehydrogenase subunit 6 [Garcinia hessii] Length = 179 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|294630805|ref|ZP_06709365.1| NADH dehydrogenase I, J subunit [Streptomyces sp. e14] gi|292834138|gb|EFF92487.1| NADH dehydrogenase I, J subunit [Streptomyces sp. e14] Length = 280 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 100/201 (49%), Gaps = 20/201 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ +A+I + V +R ++S SL + A +L GA F+ ++ +VVY Sbjct: 14 EAFQFWVLGTVAVIGALCTVFMRKAVHSALSLAGTMIILAVFYLANGAYFLGIVQIVVYT 73 Query: 64 GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + E + ++ L GIL I AS F+ Sbjct: 74 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGILLVAGIANAS-LKDFAGA 132 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G+ + NVE + +++T+Y Y E++G +L+ + IGA+VL HR +R + Sbjct: 133 GKAN----ANGNVEGLASLIFTRYVYAFELTGALLITATIGAMVLT--HRERTERAKTQR 186 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 +L +V+ GK + Sbjct: 187 ELAEQ--------RVREGKHV 199 >gi|257852698|gb|ACV71361.1| NADH dehydrogenase subunit 6 [Hymenanthera alpina] Length = 178 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVPFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852670|gb|ACV71347.1| NADH dehydrogenase subunit 6 [Lachnostylis bilocularis] Length = 178 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLG------SFF------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G FF I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTHRNTTSMRYTVYAVK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHKTKKVKRQDIFRR 172 >gi|222839810|ref|YP_002587031.1| NADH dehydrogenase subunit 6 [Glomus intraradices] gi|306960129|ref|YP_003875545.1| NADH dehydrogenase subunit 6 [Glomus irregulare] gi|222136772|gb|ACM45004.1| NADH dehydrogenase subunit 6 [Glomus intraradices] gi|306490559|gb|ADM94800.1| NADH dehydrogenase subunit 6 [Glomus irregulare] Length = 192 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 21/188 (11%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F+A++S+ V+T NPI +V LI F+ + LLG F+A+ L++Y Sbjct: 1 MSPFLLELLPFVAVLSAIFVITAVNPILAVLFLIAVFITVSAYLALLGLTFLALSYLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDI-------EVAEPRKKRGFL-GSFFIGILAAELIVCASNFMV 114 VGA+ + FLF+IMMLDI + E A FL G+ F+ L + Sbjct: 61 VGAIAILFLFVIMMLDIKLAELSSSGEEASKVYPIAFLIGTPFLWTLTGSPLFRGDTLYS 120 Query: 115 FSAEGEL-------------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + + L + L +N+ ++G LYT Y L +G ILLL++IG I Sbjct: 121 WFDQTTLGIAHISDPSALQWTNLFAAFSNIHSLGVCLYTIYPLWLIYAGIILLLAIIGPI 180 Query: 162 VLMLRHRR 169 +L L Sbjct: 181 ILCLDKTS 188 >gi|62263478|gb|AAX78164.1| unknown protein [synthetic construct] Length = 202 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 97/170 (57%), Gaps = 14/170 (8%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 +IF F+ A ++++L ++A++ +VVYVGAV+V FLF++ MLD+ +E ++G + Sbjct: 26 EMIFTFIFTAAVWIILQQVYLALLLIVVYVGAVLVMFLFVVFMLDLHVE------EQGRV 79 Query: 94 GSFFIGILAAELIVCA--SNFMVFSAEGELSRLVFKG--NNVENIGKVLYTQYA-YPLEI 148 G FF + A ++VCA + + ++A + + +G ++ IG +++ Y E+ Sbjct: 80 GRFFYAL--AAVVVCAIFATVISYAATNVFAGAMMQGGVGGLKIIGLTMFSNANLYVFEL 137 Query: 149 SGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 FILL +M AI L LR R+ K D ++Q++ + + MVK+ S Sbjct: 138 VDFILLAAMTAAITLTLRAKRKGNKTVDPAQQVKVRAKDRLTMVKMPSNN 187 >gi|257852594|gb|ACV71309.1| NADH dehydrogenase subunit 6 [Garcinia macrophylla] Length = 178 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|56791552|gb|AAW30314.1| NADH dehydrogenase subunit 6 [Amborella trichopoda] Length = 178 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 27/184 (14%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ V FLF++ Sbjct: 2 ALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVV 61 Query: 75 MMLDIDIEVAEPRKK-------RGFLGSFF------------IGILAAELIVCASNFMVF 115 MM +I++AE ++ G +G F I +L + + V+ Sbjct: 62 MMF--NIQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRKTTSLRYTVY 119 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + V N E +G +LYT Y+ + ILL++MIGAIV + ++RQD Sbjct: 120 AGK------VRSWTNSETLGNLLYTYYSVWFLVPSPILLVAMIGAIVQTMHSTTKVQRQD 173 Query: 176 ISKQ 179 + ++ Sbjct: 174 VFRR 177 >gi|257852692|gb|ACV71358.1| NADH dehydrogenase subunit 6 [Trigoniastrum hypoleucum] Length = 178 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 88/170 (51%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129 I R S IG IL E+ N + + + L V Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +K+QDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKKQDIFRR 172 >gi|257852702|gb|ACV71363.1| NADH dehydrogenase subunit 6 [Brunellia acutangula] Length = 170 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 23/170 (13%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI----- 81 NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I I Sbjct: 1 NPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFHIQIAEIHE 60 Query: 82 EVAEPRKKRGFLG------SFF------IGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 EV G +G FF I +L + + + V++ + V Sbjct: 61 EVLRYLPVSGIMGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK------VRSWT 114 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ ++ Sbjct: 115 NLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 164 >gi|257852592|gb|ACV71308.1| NADH dehydrogenase subunit 6 [Garcinia latissima] Length = 178 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIQLLPTQRKTAYLKYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900576|gb|ABO41454.1| NADH dehydrogenase subunit 6 [Tetrastigma obovatum] gi|133900578|gb|ABO41455.1| NADH dehydrogenase subunit 6 [Tetrastigma rumicispermum] gi|133900580|gb|ABO41456.1| NADH dehydrogenase subunit 6 [Tetrastigma voinierianum] Length = 179 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129 I R S IG IL E+ N + + + L V Sbjct: 63 IAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAEKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|133900432|gb|ABO41382.1| NADH dehydrogenase subunit 6 [Dichapetalum macrocarpum] Length = 179 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 87/170 (51%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129 I R S IG IL E+ N + + + L V Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900410|gb|ABO41371.1| NADH dehydrogenase subunit 6 [Caryocar glabrum] Length = 179 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V NP++SV I F++ +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAPNPVHSVLFPILVFLDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852576|gb|ACV71300.1| NADH dehydrogenase subunit 6 [Ploiarium alternifolium] Length = 178 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|113953515|ref|YP_731811.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9311] gi|113880866|gb|ABI45824.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6 [Synechococcus sp. CC9311] Length = 199 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 12/175 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F S + ++ + VV + N +YS F L F+ AGL+LLL A FVA ++VYV Sbjct: 8 QLICFLALSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAE-P--RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GAV V LF IM+++ ++A P +R G +G+ A + +V + E Sbjct: 68 GAVNVLILFAIMLVNKKEDLAPIPGLPIRRLLSGGVCVGLFA-----LLTRVVVTTPWTE 122 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + V IG+ L+T Y P E++ +LL++MIGAIVL RRD++ D Sbjct: 123 GPTPIGEDATVR-IGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVQSVD 173 >gi|257852578|gb|ACV71301.1| NADH dehydrogenase subunit 6 [Anthodiscus amazonicus] Length = 178 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V NP++SV I F++ +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAPNPVHSVLFSILVFLDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|253689140|ref|YP_003018330.1| NADH dehydrogenase (quinone) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755718|gb|ACT13794.1| NADH dehydrogenase (quinone) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 186 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 18/184 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +AI+++ V+T NP++++ ++ + + AG+F LGA F ++++VY GA++ Sbjct: 5 FYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPR----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 V F+F++MML++ V E K ++G GIL+ L+V N ++ L Sbjct: 65 VLFVFVVMMLNLGNSVEEQERNWLKPSAWVGP---GILSLALLVIVVNAIL-----SLKE 116 Query: 124 LVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G VE +G L+ Y +E++ +LL +V+ R+ KR D+ + Sbjct: 117 QGITGTPVEAKAVGISLFGPYVLAVELASMLLL----AGLVVAFHIGREDKRGDVVSKEG 172 Query: 182 SNPD 185 +N D Sbjct: 173 ANQD 176 >gi|11467927|ref|NP_057988.1| NADH dehydrogenase subunit 6 [Scenedesmus obliquus] gi|8099192|gb|AAF72047.1|AF204057_2 NADH dehydrogenase subunit 6 [Scenedesmus obliquus] gi|7711049|emb|CAB90373.1| NADH dehydrogenase subunit 6 [Scenedesmus obliquus] Length = 219 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 34/215 (15%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + A++S FL++ +NP++SVF L+ F++ +GL +LLG E+ ++ L+VYVGA+ Sbjct: 5 FALIATGALMSVFLMMRSKNPVHSVFYLVLLFLHCSGLLVLLGLEYFVLLQLLVYVGALA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCA----SNFMV---FSAEG 119 + FLF++M+LDI E+ R +RG G+L LI+ A + +V F Sbjct: 65 ILFLFVVMLLDIPSTEIL--RHQRGTYP--VAGVLGLCLILSALLAFTQPLVESPFQTSP 120 Query: 120 ELSRLVFKGNN----------------------VENIGKVLYTQYAYPLEISGFILLLSM 157 + F G N V N+G LY +A L I +LL++M Sbjct: 121 IPTTSTFTGQNSDFVSSSRHYSFWNNYRTATSTVANLGIRLYGVHADLLIIRSLLLLVAM 180 Query: 158 IGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 +GA+ L L+ + QD+ +Q + S+V + Sbjct: 181 VGAVGLTLKRPVSVPNQDVFRQHYVDFQKSLVQIP 215 >gi|133900390|gb|ABO41361.1| NADH dehydrogenase subunit 6 [Balanops vieillardii] Length = 179 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI+ F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 VRSWTNLEALGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900504|gb|ABO41418.1| NADH dehydrogenase subunit 6 [Mesua sp. Coode 7884] Length = 179 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900394|gb|ABO41363.1| NADH dehydrogenase subunit 6 [Bernardia incana] Length = 179 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G ++YT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLIYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTRVKRQDLFRR 172 >gi|163848449|ref|YP_001636493.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus aurantiacus J-10-fl] gi|222526377|ref|YP_002570848.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus sp. Y-400-fl] gi|163669738|gb|ABY36104.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus aurantiacus J-10-fl] gi|222450256|gb|ACM54522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus sp. Y-400-fl] Length = 168 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 89/167 (53%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + + +AII + ++ RN ++S L+ F A LFLLL A F+ I L VY Sbjct: 1 MELILFLITALIAIIGAVAMLVSRNAVHSALFLLLNFAAIAVLFLLLNAPFLFAIQLTVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF++M+L + P + + LA +I + S Sbjct: 61 AGAIMVLFLFVVMLLGAEKVEDTPDQIPWQQPLALLLGLALLVISVVVGLGGATNPPPES 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + ++ + +G +L+T Y P E++GFILL+++IG +VL R R+ Sbjct: 121 EALAQFSDPQTLGALLFTDYLLPFEVTGFILLIAVIGVVVLNQRGRK 167 >gi|133900398|gb|ABO41365.1| NADH dehydrogenase subunit 6 [Brexia madagascariensis] gi|133900438|gb|ABO41385.1| NADH dehydrogenase subunit 6 [Elaeodendron orientale] gi|133900500|gb|ABO41416.1| NADH dehydrogenase subunit 6 [Gymnosporia arbutifolia] gi|133900502|gb|ABO41417.1| NADH dehydrogenase subunit 6 [Gymnosporia senegalensis] Length = 179 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|228936578|ref|ZP_04099373.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823093|gb|EEM68930.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 162 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYLAVNNIDFANESAQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159 >gi|133900528|gb|ABO41430.1| NADH dehydrogenase subunit 6 [Podocalyx loranthoides] Length = 179 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTLVKRQDIFRR 172 >gi|315445438|ref|YP_004078317.1| NADH dehydrogenase subunit J [Mycobacterium sp. Spyr1] gi|315263741|gb|ADU00483.1| NADH dehydrogenase subunit J [Mycobacterium sp. Spyr1] Length = 239 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 97/184 (52%), Gaps = 16/184 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +++ + V+ +YS SL + A L++ GA F+ ++ +VVY Sbjct: 3 ETILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAEL---IVCASNFMVFSA 117 GAV++ FLF++MM+ +D V R +R I LA L I+ + SA Sbjct: 63 GAVMMLFLFVLMMIGVDSSESLVETLRGQR-------IAALAVGLGFGILLIAGIGSVSA 115 Query: 118 EGELS-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G + G NVE + +++T+Y + E++G +L+ + +GA+VL HR +R+ Sbjct: 116 TGIVGLDQANGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLA--HRERFQRRKT 173 Query: 177 SKQL 180 ++L Sbjct: 174 QREL 177 >gi|257852738|gb|ACV71381.1| NADH dehydrogenase subunit 6 [Fagus grandifolia] Length = 178 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|330339526|ref|YP_004376727.1| NADH dehydrogenase subunit 6 [Paracorallium japonicum] gi|328750567|dbj|BAK18829.1| NADH dehydrogenase subunit 6 [Paracorallium japonicum] Length = 184 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 17/188 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF + S + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MNSLFI-IISLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + FLF+IM+ + +P K S F+ + +I + + S + + Sbjct: 60 VGAIAILFLFVIML------IQQPNKVYYQDHSHFLPV-GLSVIFLFYSLLTNSPKYISN 112 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR---------HRRDIKR 173 ++ N+ IG LYT Y + ++ +LL++M+GAI+L + H R Sbjct: 113 PVIGSRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILLAKQPNTPSLYDSHVEIRSR 172 Query: 174 QDISKQLE 181 QD+ Q+ Sbjct: 173 QDLFLQIS 180 >gi|257852654|gb|ACV71339.1| NADH dehydrogenase subunit 6 [Lophira lanceolata] gi|257852656|gb|ACV71340.1| NADH dehydrogenase subunit 6 [Luxemburgia octandra] Length = 178 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +MV++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852618|gb|ACV71321.1| NADH dehydrogenase subunit 6 [Omphalea diandra] Length = 180 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 13/172 (7%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + ++ L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNMASLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + R +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHSNRHGAVKRQDVFRR 174 >gi|239943485|ref|ZP_04695422.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998] gi|239989939|ref|ZP_04710603.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 11379] gi|291446956|ref|ZP_06586346.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998] gi|291349903|gb|EFE76807.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998] Length = 289 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 102/199 (51%), Gaps = 18/199 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V ++ ++S SL + A +L GA F+ ++ ++VY Sbjct: 14 EAIQFWILGTVAVIGALSTVLMKKAVHSALSLAGTMIILAVFYLANGAYFLGIVQIIVYT 73 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLG---SFFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + + E K + +L S GIL LI N + + Sbjct: 74 GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAGCSLGFGIL---LIAGIGNASLSTFN 130 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + G NVE + +++T+Y + EI+G +L+ + +GA+VL HR +R + Sbjct: 131 GLGAANAQHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMVLT--HRERTERARTQR 188 Query: 179 QLESNPDNSIVMVKVKSGK 197 +L +V+ GK Sbjct: 189 ELAEQ--------RVREGK 199 >gi|269836330|ref|YP_003318558.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphaerobacter thermophilus DSM 20745] gi|269785593|gb|ACZ37736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphaerobacter thermophilus DSM 20745] Length = 242 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 18/159 (11%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 R P++S SL+ +FVN A ++++L AEF+A ++VY GA++V LF+IM++ Sbjct: 26 RKPVHSALSLVVSFVNVAAIYVILRAEFLAAAQIIVYTGAILVLVLFVIMLV-------H 78 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSA---------EGELSRLVFK--GNNVENI 134 P F G I + A ++ V +A G S + G N + + Sbjct: 79 PEDLPEFHGGRPIQRVLALILGLVLLGEVLAAILTRTVVGQPGPWSEQAVQAVGGNTQAL 138 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 G+VLY+ Y P++ + +LL++ IGA+VL ++R Sbjct: 139 GQVLYSGYVLPIQATALLLLVATIGALVLARPETPRVRR 177 >gi|133900388|gb|ABO41360.1| NADH dehydrogenase subunit 6 [Austrobuxus megacarpus] Length = 179 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML--- 77 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIK 62 Query: 78 --DIDIEVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 +I EV G +G F I +L + + + V++ + Sbjct: 63 KAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|228924029|ref|ZP_04087305.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835519|gb|EEM80884.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 162 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 89/161 (55%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D K ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEEE 159 >gi|229175967|ref|ZP_04303464.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus MM3] gi|228607561|gb|EEK64886.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus MM3] Length = 162 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTQHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159 >gi|257852590|gb|ACV71307.1| NADH dehydrogenase subunit 6 [Montrouziera cauliflora] Length = 178 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|253698807|ref|YP_003019996.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M21] gi|251773657|gb|ACT16238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M21] Length = 160 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 11/169 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+ + + +I + +T R + ++ L+ +F A +F LLGA FVA + +++Y Sbjct: 1 MERIIFYILAAVTVIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPFVAALEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++V FLF+IMM +E+A P K + L ++ ++ ++V + +V G+ Sbjct: 61 AGAIMVLFLFVIMM----VELASPEKLPKPTLSDWWPALILVLVVVASLTVLV---AGQA 113 Query: 122 SRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + G V +VL+T+Y +E+ LL +++GA L L RR Sbjct: 114 PPVPGAGAQTVRQFSQVLFTRYGVAIELVSMQLLFALVGA--LYLGRRR 160 >gi|258593442|emb|CBE69781.1| NAD(P)H-quinone oxidoreductase chain 6 (NAD(P)H dehydrogenase I, chain 6) (NDH-1, chain 6) [NC10 bacterium 'Dutch sediment'] Length = 170 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 4/161 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + + +S LVV +N ++ +L+FAF A LF+LL AEF+A +++YVG + Sbjct: 11 FFLMAAFTVGASLLVVLAKNIVHCAIALVFAFFGVAALFVLLDAEFLAAAQVLLYVGGIT 70 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + LF IM+ I + +G + +LA ++ +N F A + + Sbjct: 71 ILLLFAIMLTS-RISAGGVKIMNEQVGISAVVVLAIVGLLAYANLKGFPA---MVPPLTM 126 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 +N +IGK+L T Y P E+ +LL +M+GAI+L R R Sbjct: 127 ADNTASIGKLLLTTYVLPFEVVSLLLLAAMVGAIILARRER 167 >gi|182436768|ref|YP_001824487.1| NADH dehydrogenase subunit J [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777363|ref|ZP_08236628.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] gi|178465284|dbj|BAG19804.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657696|gb|EGE42542.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] Length = 288 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 97/182 (53%), Gaps = 10/182 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V ++ ++S SL + A +L GA F+ ++ +VVY Sbjct: 14 EAIQFWILGTVAVIGALSTVLLKRAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVYT 73 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLG---SFFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + + E K + +L GIL LI N + + E Sbjct: 74 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALGCGLGFGIL---LIAGIGNASLSTFE 130 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + G N+E + +++T+Y + EI+G +L+ + +GA+VL HR +R + Sbjct: 131 GLGAANAAHGGNIEGLANLIFTKYVFAFEITGALLITATVGAMVLT--HRERTERAKTQR 188 Query: 179 QL 180 ++ Sbjct: 189 EM 190 >gi|133900554|gb|ABO41443.1| NADH dehydrogenase subunit 6 [Scyphostegia borneensis] Length = 179 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172 >gi|229315898|ref|YP_002860124.1| NADH dehydrogenase subunit 6.1 [Micromonas sp. RCC299] gi|229315908|ref|YP_002860134.1| NADH dehydrogenase subunit 6.2 [Micromonas sp. RCC299] gi|226431183|gb|ACO55588.1| NADH dehydrogenase subunit 6.1 [Micromonas sp. RCC299] gi|226431193|gb|ACO55598.1| NADH dehydrogenase subunit 6.2 [Micromonas sp. RCC299] Length = 268 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 56/79 (70%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+F+ A+++ +V+ +NP+YSV LI F N +GL LL+ +F AM+ LVVY Sbjct: 1 MNLVLFYMFASFALLAGIMVIRAKNPVYSVLFLILVFCNVSGLLLLINLDFFAMVFLVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI 81 VGA+ V FLF++MML++ + Sbjct: 61 VGAIAVLFLFVVMMLNVKL 79 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186 + + IG V+YT Y ++ ILL++MIG+IVL + +KRQD+ +Q + D Sbjct: 201 QTTTIHTIGHVVYTYYMVFFILASIILLIAMIGSIVLTMHKGVFVKRQDVFEQ--NTRDF 258 Query: 187 SIVMVKVKS 195 S + KVKS Sbjct: 259 SKTLRKVKS 267 >gi|219669762|ref|YP_002460197.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfitobacterium hafniense DCB-2] gi|219540022|gb|ACL21761.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfitobacterium hafniense DCB-2] Length = 170 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 95/165 (57%), Gaps = 10/165 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ F++F+ +A+ S++ VVT +N ++S F L +F A L++LL AE++A + L+VY Sbjct: 4 MATIVFFIFAIIAVASAWGVVTSKNIVHSAFFLALSFAGVAVLYVLLNAEYLAAVQLLVY 63 Query: 63 VGAVIVFFLFIIMM-LDIDIEVAEPRKKR---GFLGSFFIGILAAELIVCASNFMVFSAE 118 GA+ + +F +M+ L D+ + P K+ G L S + I+ A +I+ S++ + Sbjct: 64 AGAISIMVIFAVMLTLRGDVAESSPVTKKWTQGALVSALVFIVLALVILTNSDWRI---- 119 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 L+ G + K+L + Y P E + ++ +++IGA+++ Sbjct: 120 --LAMPALAGGTTVELSKLLLSWYMVPFEAAAILITVALIGAVII 162 >gi|257852640|gb|ACV71332.1| NADH dehydrogenase subunit 6 [Ixonanthes reticulata] Length = 178 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|229014462|ref|ZP_04171580.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides DSM 2048] gi|229020512|ref|ZP_04177259.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1273] gi|229026729|ref|ZP_04183066.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1272] gi|229063944|ref|ZP_04200243.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH603] gi|229136109|ref|ZP_04264863.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST196] gi|229170001|ref|ZP_04297694.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH621] gi|228613519|gb|EEK70651.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH621] gi|228647354|gb|EEL03435.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST196] gi|228716350|gb|EEL68060.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH603] gi|228734577|gb|EEL85234.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1272] gi|228740783|gb|EEL91034.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1273] gi|228746812|gb|EEL96697.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides DSM 2048] Length = 162 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + FS + L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNQSTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEGEED 159 >gi|228988518|ref|ZP_04148607.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229142033|ref|ZP_04270558.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST26] gi|229199416|ref|ZP_04326081.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1293] gi|228584130|gb|EEK42283.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1293] gi|228641322|gb|EEK97628.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST26] gi|228771234|gb|EEM19711.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 162 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159 >gi|133900510|gb|ABO41421.1| NADH dehydrogenase subunit 6 [Monotaxis megacarpa] Length = 181 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDLFRR 174 >gi|257852642|gb|ACV71333.1| NADH dehydrogenase subunit 6 [Ochthocosmus longipedicellatus] Length = 178 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|228911134|ref|ZP_04074940.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis IBL 200] gi|228848497|gb|EEM93345.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis IBL 200] Length = 162 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAIVL + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLAKKDEKE 157 >gi|288819088|ref|YP_003433436.1| NADH dehydrogenase I chain J [Hydrogenobacter thermophilus TK-6] gi|288788488|dbj|BAI70235.1| NADH dehydrogenase I chain J [Hydrogenobacter thermophilus TK-6] gi|308752671|gb|ADO46154.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobacter thermophilus TK-6] Length = 163 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 21/170 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + L S ++S+ + ++NP++ + + + + AG+FL + AE +A + L++Y Sbjct: 1 MEWVITALLSLWLVLSALCTIFMKNPVHVILAFLSVILAMAGIFLQMKAELLAGLQLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS---------NFM 113 A++VF++ +I ++ + + KR F GI EL A ++M Sbjct: 61 AVAIVVFYVLVITVIPWE------KVKR------FEGIYKQELFWGAPFFLISFLLMSYM 108 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 V + V G+NV ++GK L+T Y +P E++ ILL++MIGAI+L Sbjct: 109 VLKGKFAQPLNVISGDNVRDVGKNLFTSYLFPFEVASVILLVAMIGAILL 158 >gi|257852634|gb|ACV71329.1| NADH dehydrogenase subunit 6 [Eliea articulata] Length = 178 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900558|gb|ABO41445.1| NADH dehydrogenase subunit 6 [Tapura guianensis] Length = 179 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 87/170 (51%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL--------VFKGN 129 I R S IG IL E+ N + + + L V Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172 >gi|50083957|ref|YP_045467.1| NADH dehydrogenase I chain J [Acinetobacter sp. ADP1] gi|49529933|emb|CAG67645.1| NADH dehydrogenase I chain J [Acinetobacter sp. ADP1] Length = 173 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 57/82 (69%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AIIS+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIISTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ E +K Sbjct: 65 VLFVFVVMMLNLGRHTVEQERK 86 >gi|257852714|gb|ACV71369.1| NADH dehydrogenase subunit 6 [Plagiopteron suaveolens] Length = 178 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 ISEIQEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRYTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VGSWTNLETLGNLLYTYYVVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|257852648|gb|ACV71336.1| NADH dehydrogenase subunit 6 [Durandea pentagyna] Length = 178 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900378|gb|ABO41355.1| NADH dehydrogenase subunit 6 [Acharia tragodes] Length = 181 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 25/178 (14%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI+ F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 118 IRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTSHSAVKRQDIFRR 174 >gi|226355368|ref|YP_002785108.1| NADH dehydrogenase (quinone) subunit J [Deinococcus deserti VCD115] gi|226317358|gb|ACO45354.1| putative NADH dehydrogenase (quinone), subunit J (NADH-quinone oxidoreductase, subunit J) [Deinococcus deserti VCD115] Length = 199 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 14/193 (7%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F L +A++ + + RN +++ L+ + AGLF + A F+A I ++VY GA Sbjct: 3 LAFILLGALALVGGVITIAARNAVHASLGLVGTLLCVAGLFATMNASFLAAIQVIVYAGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSAEGELS 122 ++V FLF+IMML+ + V R F L S +LA +V A + E + Sbjct: 63 IMVLFLFVIMMLNANAPVTG-RDPVPFVRELASIGGVLLAGAFVVLAFTYRDPRPLAEGA 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 +G +G+ L T++ P E +LL++++GA+ L+ R Q + Sbjct: 122 E-ALRGGGAGPVGETLLTRFLLPFEAVSILLLVAIVGAVALVQRPE---------PQTDG 171 Query: 183 NPDNSIVMVKVKS 195 PD+ + V Sbjct: 172 LPDSDAETLPVTP 184 >gi|42525211|ref|NP_970591.1| NADH dehydrogenase I chain J [Bdellovibrio bacteriovorus HD100] gi|39577422|emb|CAE81245.1| NADH dehydrogenase I chain J [Bdellovibrio bacteriovorus HD100] Length = 178 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 5/168 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F+ +F+ + S V+ + NPIYS L V + LF+ L A F+A + L+ Sbjct: 1 MTADAFLFWFLAFVTLASGLSVILMSNPIYSALCLAMTMVGISALFVTLNAYFIAGVQLI 60 Query: 61 VYVGAVIVFFLFIIMMLDI--DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 VY GAV+V F +IM+ D+ D++ K G + +G+ A ++ + + E Sbjct: 61 VYAGAVMVLFTMVIMLFDLKKDVQAFTRGKFTGVVKIASVGLFAGLVVGAIAMSVNLMGE 120 Query: 119 GELSRLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 V G +E+ +G++L+T+Y + E G +LL+ +GA+ L Sbjct: 121 KTTDNPVLVGTGMESTKALGQILFTKYIFGFEALGVLLLVIAVGAVAL 168 >gi|257852750|gb|ACV71387.1| NADH dehydrogenase subunit 6 [Calycanthus floridus] Length = 178 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 27/178 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++ V I F + +GL LLLG +F AMI+LVV++GA+ FLF++MM Sbjct: 3 MVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISLVVHIGAIAASFLFVVMMF--H 60 Query: 81 IEVAEPRKK-------RGFLGSFF------------IGILAAELIVCASNFMVFSAEGEL 121 I++AE ++ G +G F I +L + + V + + Sbjct: 61 IQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVHAGK--- 117 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 ---VRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|257852632|gb|ACV71328.1| NADH dehydrogenase subunit 6 [Cratoxylum formosum] Length = 178 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|225850950|ref|YP_002731184.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit j) (ndh-1 subunit j) [Persephonella marina EX-H1] gi|225645392|gb|ACO03578.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit j) (ndh-1 subunit j) [Persephonella marina EX-H1] Length = 176 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 17/177 (9%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS +AI+S+ VV +N IY+V SLI + +GLF +GAE + + ++ Sbjct: 1 MELNTVAFYTFSTLAILSAVGVVFFKNIIYAVLSLISTLIMVSGLFFTMGAELIGGLQIL 60 Query: 61 VYVGAVIVFFLFIIMML------DIDIEVAEPRKKRGFLGSFFIGILAAELI-VCASNFM 113 +Y A++VF++ +I + +D + GFL FI + L +N Sbjct: 61 IYAVAIVVFYVLVISTVPEFKGRSVDPKYMLTSIPVGFL--IFIELAYVSLYGAWEANKG 118 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +F+ E +V + NV+ + +L+T+Y +P E++ ILL++MIGAI L R+D Sbjct: 119 IFTPE-----VVNEVGNVKAVATMLFTKYLFPFEVASLILLVAMIGAI---LIGRKD 167 >gi|257852582|gb|ACV71303.1| NADH dehydrogenase subunit 6 [Centroplacus glaucinus] Length = 178 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852724|gb|ACV71374.1| NADH dehydrogenase subunit 6 [Afrostyrax sp. Cheek 5007] Length = 180 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174 >gi|50121943|ref|YP_051110.1| NADH dehydrogenase subunit J [Pectobacterium atrosepticum SCRI1043] gi|49612469|emb|CAG75919.1| NADH-quinone oxidoreductase chain J [Pectobacterium atrosepticum SCRI1043] Length = 187 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 101/184 (54%), Gaps = 17/184 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +AI+++ V+T NP++++ ++ + + AG+F LGA F ++++VY GA++ Sbjct: 5 FYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ V E ++R +L S +IG IL+ L+V N ++ L Sbjct: 65 VLFVFVVMMLNLGSSVEE--QERNWLKPSVWIGPSILSLALLVIVVNAIL-----SLKDQ 117 Query: 125 VFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD-ISKQLE 181 G VE +G L+ Y +E++ +LL +V+ R+ KR D ++K+ Sbjct: 118 GITGTPVEAKAVGISLFGPYVLAVELASMLLL----AGLVVAFHIGREDKRGDVVNKEGG 173 Query: 182 SNPD 185 +N D Sbjct: 174 ANQD 177 >gi|133900468|gb|ABO41400.1| NADH dehydrogenase subunit 6 [Hugonia platysepala] Length = 179 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852630|gb|ACV71327.1| NADH dehydrogenase subunit 6 [Sacoglottis gabonensis] Length = 178 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|228917903|ref|ZP_04081439.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930300|ref|ZP_04093306.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228949014|ref|ZP_04111287.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094403|ref|ZP_04225476.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-42] gi|229124797|ref|ZP_04253976.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus 95/8201] gi|228658672|gb|EEL14333.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus 95/8201] gi|228689004|gb|EEL42830.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-42] gi|228810770|gb|EEM57118.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829359|gb|EEM74990.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841700|gb|EEM86811.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 162 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESAQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 159 >gi|297181765|gb|ADI17946.1| NADH:ubiquinone oxidoreductase subunit 6 (chain j) [uncultured Desulfobacterales bacterium HF0200_07G10] Length = 169 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 96/164 (58%), Gaps = 4/164 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L FY + + ++ + VV +P+ S SLI + AG+F+L A F+A++ +++Y Sbjct: 1 MELLIFYPLAGLCVLLALGVVFNNSPVGSAISLIGMMLGLAGIFILQQAHFIAILQIIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA++V F+F+IM+L++ + +++ L S G+LA ++ S+ ++FS + Sbjct: 61 AGAIMVLFMFVIMLLNLKKGDDTGWTAREKNLLLSILTGLLAIGILYKISD-IIFSGKMA 119 Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++ V NIGK L+T Y P E++ +LL +M+GA+VL Sbjct: 120 TPAILPDSFGTVANIGKTLFTDYVLPFEVASILLLAAMVGAVVL 163 >gi|133900556|gb|ABO41444.1| NADH dehydrogenase subunit 6 [Stachystemon axillaris] Length = 179 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + ++KRQ I ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTEVKRQGIFRR 172 >gi|133900526|gb|ABO41429.1| NADH dehydrogenase subunit 6 [Pimelodendron zoanthogyne] Length = 167 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 85/165 (51%), Gaps = 11/165 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE-----LSRLVFKG-----N 129 I R S IG IL E+ N + + LS V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLSYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 167 >gi|133900384|gb|ABO41358.1| NADH dehydrogenase subunit 6 [Archytaea triflora] Length = 179 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900408|gb|ABO41370.1| NADH dehydrogenase subunit 6 [Carpotroche longifolia] gi|133900446|gb|ABO41389.1| NADH dehydrogenase subunit 6 [Erythrospermum phytolaccoides] Length = 181 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174 >gi|133900562|gb|ABO41447.1| NADH dehydrogenase subunit 6 [Trichadenia zeylanica] Length = 180 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174 >gi|281428836|ref|YP_003355013.1| NADH dehydrogenase subunit 6 [Ircinia strobilina] gi|251765336|gb|ACT15488.1| NADH dehydrogenase subunit 6 [Ircinia strobilina] Length = 169 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 12/177 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F YL S ++S+ +V+ ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VY Sbjct: 1 MYLFFCYLLSVGIMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFLAFLLLLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF++M+L ++ + + K + + F L + F G Sbjct: 61 VGAIMVLFLFVLMILMLNEDELQGEKSKLVVFVFLFFFLFLFCFKIGQ--VTFPNWGANE 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV----LMLRHRRDIKRQD 175 R + +G+ LY +Y FILLL+MIG + L+ +KR+ Sbjct: 119 R------GIVLLGRGLYIEYGEAFIAGSFILLLAMIGVVELVGDLIWESNSGVKRRG 169 >gi|257852572|gb|ACV71298.1| NADH dehydrogenase subunit 6 [Pangium edule] Length = 181 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174 >gi|120402874|ref|YP_952703.1| NADH dehydrogenase subunit J [Mycobacterium vanbaalenii PYR-1] gi|119955692|gb|ABM12697.1| NADH dehydrogenase subunit J [Mycobacterium vanbaalenii PYR-1] Length = 241 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 97/187 (51%), Gaps = 16/187 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++F+ +++ + VV +YS SL + A L++ A F+ ++ +VVY Sbjct: 3 EAVLFWVFAVVSVTGALGVVAAPKAVYSAISLATTMIALAVLYIAQDAPFLGVVQIVVYT 62 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFS 116 GAV++ FLF++M++ +D +E ++ + G+L A V A+ F+ Sbjct: 63 GAVMMLFLFVLMLIGVDSSESLVETLRGQRVAAIVVGLGFGVLLVAGVGNVSATGFVGLD 122 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 E NVE + +++T+Y + E++G +L+ + +GA+VL HR +R+ Sbjct: 123 QANE-------DGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLA--HRERFERRKT 173 Query: 177 SKQLESN 183 ++L + Sbjct: 174 QRELAAE 180 >gi|133900480|gb|ABO41406.1| NADH dehydrogenase subunit 6 [Kiggelaria africana] Length = 181 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174 >gi|133900422|gb|ABO41377.1| NADH dehydrogenase subunit 6 [Clutia myricoides] gi|133900470|gb|ABO41401.1| NADH dehydrogenase subunit 6 [Humiria balsamifera] Length = 179 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|322422447|ref|YP_004221873.1| NADH dehydrogenase subunit 6 [Penicillium digitatum] gi|316891701|gb|ADU57309.1| NADH dehydrogenase subunit 6 [Penicillium digitatum] Length = 216 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 36/191 (18%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 ++I+ L ++ RNP+ SV LI FVN AGL +L+G F+ + ++VYVGAV + FLFI Sbjct: 26 VSILLGILTISSRNPVVSVLFLIGLFVNVAGLLILVGYNFLGLAYILVYVGAVSILFLFI 85 Query: 74 IMMLDIDI-EVAEPRKKRGFLGSF----FIGILAAEL--------IVC-ASN-------- 111 +M+++I + E+ L S F I+A L IVC SN Sbjct: 86 LMLINIRVSELFNDTNNDLPLASLTIIIFYYIMAQVLPLNFTENSIVCYLSNSYSDIYNV 145 Query: 112 ------FMVFSAEGELSRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSM 157 F + + ++S KG +V +IG ++YT Y+ L ++ ILLL M Sbjct: 146 QLDNELFNIVDLKQQISYASSKGWDNSLIEPTHVASIGNIMYTSYSMWLIVTSIILLLGM 205 Query: 158 IGAIVLMLRHR 168 +GAIV+ ++ + Sbjct: 206 VGAIVITIKQK 216 >gi|145219894|ref|YP_001130603.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Prosthecochloris vibrioformis DSM 265] gi|145206058|gb|ABP37101.1| NADH dehydrogenase subunit J [Chlorobium phaeovibrioides DSM 265] Length = 173 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 15/151 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FYLF+ + + S+ VV RN IYS FSL+F F A L++ L A+F+A+ +VVYVG Sbjct: 7 TVIFYLFAAITVFSAAFVVFSRNVIYSAFSLLFTFFGIAALYVFLSADFIAVTQVVVYVG 66 Query: 65 AVIVFFLFIIM----MLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEG 119 ++V LF +M ++D D++ G FL F+GILAA L F ++ G Sbjct: 67 GILVLLLFGVMFTNNIMDTDLKTDVLHAIPGTFL---FLGILAALL------FTFYTTNG 117 Query: 120 EL-SRLVFKGNNVENIGKVLYTQYAYPLEIS 149 + S +G+ VE IG ++Y P E++ Sbjct: 118 WMPSDTQLQGSVVERIGFETMSRYVLPFEMA 148 >gi|257852588|gb|ACV71306.1| NADH dehydrogenase subunit 6 [Mammea siamensis] Length = 178 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGLIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|257852722|gb|ACV71373.1| NADH dehydrogenase subunit 6 [Ruptiliocarpon caracolito] Length = 173 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 23/171 (13%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI---- 81 +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I I Sbjct: 3 KNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIH 62 Query: 82 -EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSRLVFKG 128 EV G +G F I +L + + + V++ + V Sbjct: 63 EEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK------VRSW 116 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 117 TNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 167 >gi|133900514|gb|ABO41423.1| NADH dehydrogenase subunit 6 [Ochna multiflora] Length = 179 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRDISGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +MV++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|15150748|ref|NP_150414.1| NADH dehydrogenase subunit 6 [Pylaiella littoralis] gi|15147754|emb|CAC50855.1| NADH dehydrogenase subunit 6 [Pylaiella littoralis] Length = 222 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 43/204 (21%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +NP+YS L+ F +G+ LLG EF+A++ L+VY GA+ V LF++MMLDI Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDIK- 79 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNF------------MVFSAEGELSRLVFKGN 129 + P + F+ G L ++ C + S E ++ N Sbjct: 80 AIENPWSSKKISLVFYPGSL---VLFCCLGWSYNVKEIGFLPSFTLSLCKEKVESLYSSN 136 Query: 130 N-----------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---------- 168 N + + +LY+ YA L I+G ILL++M+GAI L L+ + Sbjct: 137 NMWFVEFDSSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAISLTLQKKSPESLYRQLG 196 Query: 169 RDIK------RQDISKQLESNPDN 186 R+ K ++ +S +L+ +PD Sbjct: 197 RESKHAVFSIKEKVSYRLDDDPDT 220 >gi|302559098|ref|ZP_07311440.1| NADH dehydrogenase I, J subunit [Streptomyces griseoflavus Tu4000] gi|302476716|gb|EFL39809.1| NADH dehydrogenase I, J subunit [Streptomyces griseoflavus Tu4000] Length = 280 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 99/199 (49%), Gaps = 20/199 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ +A+I + V +R ++S L + A +L GA F+ ++ +VVY Sbjct: 14 EAFQFWVLGTVAVIGALCTVFMRRAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVVYT 73 Query: 64 GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + E + ++ L G+L I AS F+ Sbjct: 74 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGVLLVGGIGNAS-LSEFNGL 132 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 GE + G NVE + +L+T+Y + EI+G +L+ + +GA+VL HR +R + Sbjct: 133 GEAN----AGGNVEGLAALLFTKYVFAFEITGALLITAAVGAMVLT--HRERTERARTQR 186 Query: 179 QLESNPDNSIVMVKVKSGK 197 +L +V+ GK Sbjct: 187 ELAEQ--------RVREGK 197 >gi|282860728|ref|ZP_06269794.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces sp. ACTE] gi|282564464|gb|EFB70000.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces sp. ACTE] Length = 288 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 96/185 (51%), Gaps = 10/185 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F+L +A+I + V ++ ++S SL + A +L GA F+ ++ +VVY Sbjct: 16 EAVQFWLLGTVAVIGALSTVLMKKAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVYT 75 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + + E K + +L + G+L LI + S Sbjct: 76 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLAAGCGLGFGVL---LIAGIGQASLRSYN 132 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + G NVE + +++T+Y + EI+G +L+ + +GA ++L HR +R + Sbjct: 133 GLGAANALHGGNVEGLANLIFTKYVFAFEITGALLITATVGA--MLLTHRERTERAKTQR 190 Query: 179 QLESN 183 +L Sbjct: 191 ELSQE 195 >gi|229164239|ref|ZP_04292173.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus R309803] gi|228619261|gb|EEK76153.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus R309803] Length = 163 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 89/162 (54%), Gaps = 5/162 (3%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVFKGNNVEN 133 M+ + E R ++ FF + ++ A N + FS + L NN Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSTQSTTQGSLPLHENNTLQ 121 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 IG +LY++Y P E++ ILL++++GAI+L ++D K +D Sbjct: 122 IGTLLYSKYIIPFELTSVILLVALVGAIILA---KKDEKEED 160 >gi|315587160|gb|ADU41541.1| NADH-ubiquinone oxidoreductase subunit J [Helicobacter pylori 35A] Length = 184 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 5 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 64 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 65 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVAILLTLILSAPSIGENLSKQVNS 124 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N+E IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 125 NAIDAQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 183 >gi|133900488|gb|ABO41410.1| NADH dehydrogenase subunit 6 [Linum arboreum] gi|133900544|gb|ABO41438.1| NADH dehydrogenase subunit 6 [Reinwardtia indica] Length = 179 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|133900474|gb|ABO41403.1| NADH dehydrogenase subunit 6 [Hydnocarpus sp. Chase 1301] Length = 181 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGGVKRQDIFRR 174 >gi|12408587|ref|NP_074916.1| NADH dehydrogenase subunit 6 [Podospora anserina] gi|400641|sp|P15959|NU6M_PODAN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|13304|emb|CAA32648.1| unnamed protein product [Podospora anserina] gi|14035|emb|CAA38769.1| NADH-ubiquinone oxidoreductase subunit 6 [Podospora anserina] Length = 221 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 36/196 (18%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +FS MA ++ V+ +NPI SV LI F + ++G F+ + ++VY+GAV + Sbjct: 25 IFSIMAFLTGIYVILTKNPIVSVLFLILLFGGISSYLNIIGLNFIGLSYIIVYIGAVSIL 84 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL--------IVCASNFM--VFSAEG 119 FLFI+M+++I + + FIGI+ + IV SNF FS + Sbjct: 85 FLFILMLINIRTSELQSNTSNSIPLTIFIGIIFSNFLFPMLPYDIVMLSNFYNNYFSEDF 144 Query: 120 E---------------------LSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFIL 153 ++ +++ G N++ IG ++YT Y L I+ FIL Sbjct: 145 YTIDVNINDNNLNNLYNNVLYFMTSVIWDGSVIDFNHITAIGNIMYTIYNIWLIIASFIL 204 Query: 154 LLSMIGAIVLMLRHRR 169 LL+M+G+IV+ ++ R+ Sbjct: 205 LLAMVGSIVITIKQRK 220 >gi|257852672|gb|ACV71348.1| NADH dehydrogenase subunit 6 [Phyllanthus epiphyllanthus] Length = 170 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 86/164 (52%), Gaps = 11/164 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I I Sbjct: 1 NPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHE 60 Query: 87 RKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----NNVENIG 135 R S IG IL E+ N + + + L V+ G N+E +G Sbjct: 61 EVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLG 120 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 NLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 164 >gi|317178012|dbj|BAJ55801.1| NADH dehydrogenase subunit J [Helicobacter pylori F16] Length = 182 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 20/185 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-L 121 GAVIV + F +M + EV E ++ L + G+ L LI+ A + GE L Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVALLLTLILSAPSI------GENL 116 Query: 122 SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRR 169 S+ V N+E IG VL+T Y P E + +LL++M+G I ++ H + Sbjct: 117 SKQVNSNAIDVQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQ 176 Query: 170 DIKRQ 174 IK Sbjct: 177 FIKES 181 >gi|308062553|gb|ADO04441.1| NADH dehydrogenase subunit J [Helicobacter pylori Cuz20] Length = 182 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 20/185 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-L 121 GAVIV + F +M + EV E ++ L + G+ L LI+ A + GE L Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSI------GENL 116 Query: 122 SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRR 169 S V N+E IG VL+T Y P E + +LL++M+G I ++ H + Sbjct: 117 SEQVNSNAIDAQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQ 176 Query: 170 DIKRQ 174 IK Sbjct: 177 FIKES 181 >gi|307328630|ref|ZP_07607803.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces violaceusniger Tu 4113] gi|306885742|gb|EFN16755.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces violaceusniger Tu 4113] Length = 303 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 104/203 (51%), Gaps = 24/203 (11%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++L F++ +A+I + + + ++S L + A +L GA F+ ++ +VVY Sbjct: 16 EALQFWVLGTVAVIGALCTILMHKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVVYT 75 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---ELIVCA----SNFMVFS 116 GA+++ FLF++M++ + A K G ++ L +++CA ++ ++ Sbjct: 76 GAIMMLFLFVVMLVGV---TAADSLKETLKGQRWLAALCGLGFGILLCAGLGNASLTTWN 132 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G+ + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R Sbjct: 133 GLGQAN----AGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQ- 187 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q E+ +V++G+ + Sbjct: 188 REQAEA---------RVRTGRNV 201 >gi|310789318|gb|EFQ24851.1| NADH dehydrogenase subunit 6 [Glomerella graminicola M1.001] Length = 247 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 56/222 (25%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +AI+ + L + +NPI SV LI F + +LLG F+ + L+VYVGAV + FL Sbjct: 24 SILAILCAILTIVSKNPIVSVLFLIGLFGMVSSYLILLGLNFIGLSYLIVYVGAVSILFL 83 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL----------IVCASN---------- 111 FI+M+++I + + K + FI IL L I+ SN Sbjct: 84 FILMLINIRVSELQSNTKNSIPLALFITILFNYLIFQFLPYDLAILNNSNHSSALNNVLY 143 Query: 112 -------------FMVFSAEGELSRLV--------------FKGN-----NVENIGKVLY 139 F F + ++S + + GN ++ +IG +LY Sbjct: 144 HTSFNGISDYNKIFNSFGSNSQISNVAKEGSSDLFFATSSSWDGNLIETSHISSIGNILY 203 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 T ++ L ++ FILLL+MIGAIV+ ++ K + IS +E Sbjct: 204 TSHSMWLILTSFILLLAMIGAIVITIKQ----KNKGISSMVE 241 >gi|290967673|ref|YP_003495101.1| NADH dehydrogenase subunit 6 [Trametes cingulata] gi|289832517|gb|ADD21053.1| NADH dehydrogenase subunit 6 [Trametes cingulata] Length = 203 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 34/202 (16%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ L +F A+ SS LV+T +NP+ +V LI FVNAAG +LLG F+ + ++VY Sbjct: 1 MKNFLIELLAFAALFSSVLVITSKNPVIAVIFLISVFVNAAGYLILLGIGFIGISYIIVY 60 Query: 63 VGAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VGA+ V FLF+IMM++I DI + + + IG L I F + Sbjct: 61 VGAIAVLFLFVIMMINIKLTDILETGSQYTKNLPLALSIGSLFIYEIYTIIPFSFNNVSN 120 Query: 120 ELSRLVFKGN-------------------------------NVENIGKVLYTQYAYPLEI 148 + L+FK N +E IG+ LYT A L I Sbjct: 121 TILDLLFKFNGFILNYEISINDWVNNAVNPVIADTALTPFLQIEAIGQGLYTYGASWLII 180 Query: 149 SGFILLLSMIGAIVLMLRHRRD 170 + ILLL+M+ I + R + Sbjct: 181 TSVILLLAMVAPIFISKTRRNN 202 >gi|262369341|ref|ZP_06062669.1| NADH dehydrogenase subunit I J [Acinetobacter johnsonii SH046] gi|262315409|gb|EEY96448.1| NADH dehydrogenase subunit I J [Acinetobacter johnsonii SH046] Length = 173 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 57/82 (69%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTIRVVTNANPVHALLSLIVSLLAVAGMFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ E +K Sbjct: 65 VLFVFVVMMLNLGQHTVEQERK 86 >gi|257852726|gb|ACV71375.1| NADH dehydrogenase subunit 6 [Hua gabonii] Length = 180 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTI-HRTTHGAVKRQDVFRR 174 >gi|145225069|ref|YP_001135747.1| NADH dehydrogenase subunit J [Mycobacterium gilvum PYR-GCK] gi|145217555|gb|ABP46959.1| NADH dehydrogenase subunit J [Mycobacterium gilvum PYR-GCK] Length = 236 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 95/182 (52%), Gaps = 16/182 (8%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F++ + +++ + V+ +YS SL + A L++ GA F+ ++ +VVY GA Sbjct: 2 ILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYTGA 61 Query: 66 VIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAEL---IVCASNFMVFSAEG 119 V++ FLF++MM+ +D V R +R I LA L I+ + SA G Sbjct: 62 VMMLFLFVLMMIGVDSSESLVETLRGQR-------IAALAVGLGFGILLIAGIGSVSATG 114 Query: 120 ELS-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + G NVE + +++T+Y + E++G +L+ + +GA+VL HR +R+ + Sbjct: 115 IVGLDQANGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLA--HRERFQRRKTQR 172 Query: 179 QL 180 +L Sbjct: 173 EL 174 >gi|239929605|ref|ZP_04686558.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672] gi|291437929|ref|ZP_06577319.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672] gi|291340824|gb|EFE67780.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672] Length = 283 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 99/203 (48%), Gaps = 28/203 (13%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V +R ++S L + A +L GA F+ ++ +VVY Sbjct: 14 EAVQFWVLGTIAVIGALCTVFMRRAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 73 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121 GA+++ FLF++M++ + A K G ++ +L C F ++ + G Sbjct: 74 GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLALL------CGLGFGTLLITGIGHA 124 Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S F G NVE I +++T+Y + EI+G +L+ + +GA+VL HR +R Sbjct: 125 SLGEFNGIGQANANGNVEGIASLIFTRYVFAFEITGILLITAAVGAMVLT--HRERTERA 182 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 ++L +V+ GK Sbjct: 183 RTQRELAEQ--------RVREGK 197 >gi|89095639|ref|ZP_01168533.1| NADH dehydrogenase subunit J [Bacillus sp. NRRL B-14911] gi|89089385|gb|EAR68492.1| NADH dehydrogenase subunit J [Bacillus sp. NRRL B-14911] Length = 174 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 95/172 (55%), Gaps = 11/172 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F + A+ L++ + ++ V +L+F F++ AG+++LL AEF+A++ +++Y GA Sbjct: 8 LAFLGLAIAAVTGGILLINLEKVVHMVVALVFTFISIAGIYILLSAEFIAVVQVLIYSGA 67 Query: 66 VIVFFLFIIMMLDIDIEVAEP--RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + + LF IM+ E + R +R L F+ ILA V + + E E Sbjct: 68 ITIIMLFGIMLTRHHDESGQKAGRLRRILL---FLAILAFAFSVYIGIYNLDFPEQE--- 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++ NN E IG L++++ P E++ +LL++++GAIVL R+D + + Sbjct: 122 VLLHENNTEQIGISLFSEFVIPFELTSVVLLVALVGAIVL---SRKDDEETE 170 >gi|169634173|ref|YP_001707909.1| NADH dehydrogenase I chain J [Acinetobacter baumannii SDF] gi|184157037|ref|YP_001845376.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter baumannii ACICU] gi|239501286|ref|ZP_04660596.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter baumannii AB900] gi|260551025|ref|ZP_05825230.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter sp. RUH2624] gi|260555658|ref|ZP_05827878.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter baumannii ATCC 19606] gi|262280138|ref|ZP_06057923.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter calcoaceticus RUH2202] gi|299771411|ref|YP_003733437.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter sp. DR1] gi|332872612|ref|ZP_08440580.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6014059] gi|169152965|emb|CAP02011.1| NADH dehydrogenase I chain J [Acinetobacter baumannii] gi|183208631|gb|ACC56029.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter baumannii ACICU] gi|193076542|gb|ABO11200.2| NADH dehydrogenase I chain J [Acinetobacter baumannii ATCC 17978] gi|260405973|gb|EEW99460.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter sp. RUH2624] gi|260410569|gb|EEX03867.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter baumannii ATCC 19606] gi|262260489|gb|EEY79222.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter calcoaceticus RUH2202] gi|298701499|gb|ADI92064.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter sp. DR1] gi|332739141|gb|EGJ70000.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6014059] Length = 173 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 57/82 (69%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ E +K Sbjct: 65 VLFVFVVMMLNLGQHTVEQERK 86 >gi|257852636|gb|ACV71330.1| NADH dehydrogenase subunit 6 [Triadenum walteri] Length = 178 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKNTAYLKYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V ++E +G +LYT Y + ILL++MIGAIVL + + +KRQDI ++ Sbjct: 118 -VRSWTSLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKQVKRQDIFRR 172 >gi|133900532|gb|ABO41432.1| NADH dehydrogenase subunit 6 [Pogonophora schomburgkiana] Length = 179 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 92/170 (54%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL---VFKG-----N 129 I R S IG IL E+ I+ + + + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRKTTPLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172 >gi|153007184|ref|YP_001381509.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. Fw109-5] gi|152030757|gb|ABS28525.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. Fw109-5] Length = 170 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 91/152 (59%), Gaps = 10/152 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++F+ ++++ VV RNP+Y+ +L+ AF AG+++LL A +A++ ++VY GAV+ Sbjct: 10 FWIFAIPLLLTAMGVVVARNPVYAAMNLVAAFFFMAGIYVLLAAHLIALMQILVYAGAVM 69 Query: 68 VFFLFIIMMLDIDIEVAEPR-----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 V FLF+IM+L E E + G +G+ + + A ++V A + SA G L+ Sbjct: 70 VLFLFVIMLLSTGEEHRERERRRVMQYVGAIGA--VSLFA--VLVAAIARVPDSAMGALA 125 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 + + V+ +G+VLYT+Y P E++ +LL Sbjct: 126 Q-PDRFGTVKAVGQVLYTEYLLPFEVTSLLLL 156 >gi|257852742|gb|ACV71383.1| NADH dehydrogenase subunit 6 [Medusandra richardsiana] Length = 180 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y+ +S ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTM-HRTTHGAVKRQDVFRR 174 >gi|215484511|ref|YP_002326746.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii AB307-0294] gi|213988115|gb|ACJ58414.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii AB307-0294] Length = 172 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 57/82 (69%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 4 FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ E +K Sbjct: 64 VLFVFVVMMLNLGQHTVEQERK 85 >gi|133900476|gb|ABO41404.1| NADH dehydrogenase subunit 6 [Hypericum empetrifolium] Length = 179 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKNTAYLKYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V ++E +G +LYT Y + ILL++MIGAIVL + + +KRQDI ++ Sbjct: 118 -VRSWTSLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKQVKRQDIFRR 172 >gi|325121089|gb|ADY80612.1| NADH dehydrogenase I chain J [Acinetobacter calcoaceticus PHEA-2] Length = 172 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 57/82 (69%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 4 FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ E +K Sbjct: 64 VLFVFVVMMLNLGQHTVEQERK 85 >gi|169797050|ref|YP_001714843.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AYE] gi|213156544|ref|YP_002318205.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB0057] gi|301510621|ref|ZP_07235858.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB058] gi|301595906|ref|ZP_07240914.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB059] gi|332852139|ref|ZP_08433966.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6013150] gi|332867538|ref|ZP_08437691.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6013113] gi|169149977|emb|CAM87871.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AYE] gi|213055704|gb|ACJ40606.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB0057] gi|332729511|gb|EGJ60850.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6013150] gi|332733955|gb|EGJ65100.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6013113] Length = 173 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 57/82 (69%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ E +K Sbjct: 65 VLFVFVVMMLNLGQHTVEQERK 86 >gi|294056105|ref|YP_003549763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Coraliomargarita akajimensis DSM 45221] gi|293615438|gb|ADE55593.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Coraliomargarita akajimensis DSM 45221] Length = 193 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 15/194 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+FS + ++S+ L+V + + +I AF+ A LF+LL A +A + +VVY Sbjct: 1 MLDILFYVFSAITLLSALLMVVSPSAVNGALCMIVAFLGTAALFVLLEAYLLAALQVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIG-----ILAAELIVCASNF---- 112 GAV+V FLFIIM+LD+D A K + LG+ +G IL L + + Sbjct: 61 AGAVMVLFLFIIMLLDVDKGAGASDMKDKVSLGAASMGFALVVILVTTLFIGSGQLPEPE 120 Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V + G F +++ G L+T+Y P +++GF+LL M+G IV+ + Sbjct: 121 LRDTVANPTGATGGFEFS-TAMKSFGYSLFTKYMLPFQVAGFLLLAGMVGVIVVSKKPSI 179 Query: 170 DIKRQDISKQLESN 183 +++ D + E + Sbjct: 180 ELE-ADTADAGEGD 192 >gi|313681403|ref|YP_004059141.1| NADH dehydrogenase subunit j [Sulfuricurvum kujiense DSM 16994] gi|313154263|gb|ADR32941.1| NADH dehydrogenase subunit J [Sulfuricurvum kujiense DSM 16994] Length = 195 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 7/163 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLF+ + I+ + V +Y++ ++ + + F +LGA+F+ I ++VY Sbjct: 3 EAIAFYLFAALTIVMFTITVMTSQALYAITAMAAGMIFISAFFFILGADFLGAIQIIVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+ + F +M D +V E R + F +G+LAA ++V F+ + Sbjct: 63 GAVMALYAFGMMFFDTTRDVVEKRTNPQIV--FVLGVLAAVMVVAI--FVAPIVSNNIQA 118 Query: 124 LVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 L N+ N +G VL+T+Y P E++ +LL++MIG I+L Sbjct: 119 LYPIQENIGNSQAVGMVLFTKYLVPFEVAAVMLLVAMIGGIIL 161 >gi|257852628|gb|ACV71326.1| NADH dehydrogenase subunit 6 [Trigonostemon verrucosus] Length = 180 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 91/173 (52%), Gaps = 15/173 (8%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR---DIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGTVKRQDIFRR 174 >gi|257453975|ref|ZP_05619251.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Enhydrobacter aerosaccus SK60] gi|257448640|gb|EEV23607.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Enhydrobacter aerosaccus SK60] Length = 214 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 31/213 (14%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI++S V+T NP++++ ++I + +G+F LGA F + ++VY GA++ Sbjct: 9 FYLLAIVAILASLRVITRTNPVHALLNMIVTLLALSGIFFALGAPFAGALEIIVYAGAIM 68 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGS----------FFIGILAAELIVCASNFMVFSA 117 V F+F++MML++ + ++ +L S F +G+ LI F Sbjct: 69 VLFVFVVMMLNLGTQ--STLEEESWLSSSAWAVPAGLAFIVGLTLFSLIGMKHGF----- 121 Query: 118 EGELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 EG + + + + IG L+T+Y +EI+GF+LL ++ A L + D + + Sbjct: 122 EGIMPAFIGVEPVTAKMIGAKLFTEYLLLVEIAGFLLLAGLVAAYHLA-KSALDDENESH 180 Query: 177 SKQL------------ESNPDNSIVMVKVKSGK 197 + +L + P V+ +V+ K Sbjct: 181 NSELGNTVQPALTNFIDKEPSQPAVLREVQEEK 213 >gi|11467053|ref|NP_042529.1| NADH dehydrogenase, subunit 6 [Acanthamoeba castellanii] gi|6647619|sp|Q37371|NU6M_ACACA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|562034|gb|AAD11822.1| NADH dehydrogenase, subunit 6 [Acanthamoeba castellanii] Length = 260 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 53/72 (73%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F F+A+ SF+++ +NPI+S+ LI F N + ++LG EF+A+I L+VYVGA+ V Sbjct: 9 IFCFLALFCSFMIIASKNPIHSILYLILVFCNVTFVLIILGVEFIAIIFLIVYVGAIAVL 68 Query: 70 FLFIIMMLDIDI 81 FLF++MML+I I Sbjct: 69 FLFVVMMLNIKI 80 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%) Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 A L L F+ N E +G ++YT + + ILL+SMIG+I+L+L +IKRQ I Sbjct: 185 ASTNLLGLSFELTNTEILGWLVYTYTFFIFLVVSLILLISMIGSIILVLNQNINIKRQVI 244 Query: 177 SKQ 179 +Q Sbjct: 245 FRQ 247 >gi|319950460|ref|ZP_08024374.1| NADH:ubiquinone oxidoreductase subunit J [Dietzia cinnamea P4] gi|319435883|gb|EFV91089.1| NADH:ubiquinone oxidoreductase subunit J [Dietzia cinnamea P4] Length = 268 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 106/204 (51%), Gaps = 22/204 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S+ F++ + +A+ + VV +YS L V+ A L++ GA F+ + +VVY Sbjct: 6 ESVLFWILATVAVAGALGVVAAPRAVYSALCLAATMVSLAVLYMAQGAVFLGVGQIVVYT 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCAS--NFMVFS 116 GAV+V FLF++M++ ++ + + RG L G+L A A F F+ Sbjct: 66 GAVMVLFLFVVMLIGVESSDSLVERIRGHRVAAILAGLGFGVLLATGFARAELPPFAGFA 125 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKR 173 A G+ V + ++L++++ + E++G +L+++ +GA+VL R R R +R Sbjct: 126 A---------GGSEVPALAELLFSRHVWAFELTGVLLIIATLGAMVLAHRERFTGRLTQR 176 Query: 174 QDISKQ--LESNPDNSIVMVKVKS 195 Q +S+Q L+ D+S + + S Sbjct: 177 Q-LSEQRFLDWQRDDSARVTPLPS 199 >gi|257852652|gb|ACV71338.1| NADH dehydrogenase subunit 6 [Elvasia calophyllea] Length = 168 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 23/172 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +MV++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQD 168 >gi|297159517|gb|ADI09229.1| NADH dehydrogenase subunit J [Streptomyces bingchenggensis BCW-1] Length = 312 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 101/190 (53%), Gaps = 17/190 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +A+I + + +R ++S L + A +L GA F+ ++ +VVY Sbjct: 13 EAVQFWILATVAVIGALGTILMRKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVVYT 72 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---ELIVCA----SNFMVFS 116 GA+++ FLF++M++ + A K G ++ L +++CA ++ F+ Sbjct: 73 GAIMMLFLFVVMLVGV---TAADSLKETLKGQRWLAALCGLGFGILLCAGIGNASLKSFN 129 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKR 173 G+ + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + +R Sbjct: 130 GLGQAN----SGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALSQR 185 Query: 174 QDISKQLESN 183 + +++ + Sbjct: 186 EQAERRVRTG 195 >gi|328884321|emb|CCA57560.1| NADH-ubiquinone oxidoreductase chain J [Streptomyces venezuelae ATCC 10712] Length = 275 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 96/183 (52%), Gaps = 10/183 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ +A+I + + +R ++S L + A +L GA F+ ++ +VVY Sbjct: 14 EAFQFWVLGTVAVIGALCTILMRKAVHSALCLAGTMIILAVFYLANGAYFLGIVQIVVYT 73 Query: 64 GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + E + ++ GIL A I AS F+ Sbjct: 74 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWWAVACGLGFGILLAAGIGNAS-LKEFTGL 132 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDI 176 G + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R R ++++ Sbjct: 133 GAANSA--HGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERAATQREL 190 Query: 177 SKQ 179 S+Q Sbjct: 191 SEQ 193 >gi|225871977|ref|YP_002753431.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196] gi|225791616|gb|ACO31706.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196] Length = 172 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F +F + + ++ R+PI S SLI + A L+LLLGAEF+A ++VY Sbjct: 1 MHLVLFIIFGAFCVAGAINLLLQRHPINSALSLIVVMTSLAVLYLLLGAEFLAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F F+IM+L+ E + G ++++G A + F+ S + L Sbjct: 61 SGAIMVLFTFVIMLLNAGKE----ERTHGSRAAYWLGFPGAAALFALLTFIFLSHQPSLG 116 Query: 123 RLVFKGNNVEN--IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 V + V + +VL+ P E++ ++L++++GA+ L RH + Sbjct: 117 YAVLGPDMVGTGELSQVLFRNLLLPFEVTSVLILIAILGAVALA-RHTNE 165 >gi|133900404|gb|ABO41368.1| NADH dehydrogenase subunit 6 [Calophyllum soulattri] Length = 178 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAI+L + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIILTMHRTTKVKRQDIFRR 172 >gi|206890416|ref|YP_002248753.1| NADH-ubiquinone oxidoreductase chain 6 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742354|gb|ACI21411.1| NADH-ubiquinone oxidoreductase chain 6 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 170 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 7/164 (4%) Query: 8 FYLFSFMAI-ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY++ F+++ I S V+ +N I+S F L+ ++ A +FL L AEF+ +I ++VYVG V Sbjct: 9 FYVYFFISLTILSIAVIASKNIIHSAFFLLIFLLHVAAIFLFLNAEFLMIIQIIVYVGGV 68 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + F+F IM+++I E R KR F I L + A ++ ++ Sbjct: 69 LALFIFAIMIMNIK---EEFRHKR--FVKFSIAGLITGFLFLAGLYIFLGTVKSPENVLI 123 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 K ++V ++GK+LY+ Y P EI +LL++M+G I++ + D Sbjct: 124 K-SDVNSLGKLLYSYYFLPFEILSLVLLIAMVGGIIIAKKTPFD 166 >gi|164421194|ref|YP_001648691.1| NADH dehydrogenase subunit 6 [Vaceletia sp. GW948] gi|158939052|gb|ABW83971.1| NADH dehydrogenase subunit 6 [Vaceletia sp. GW948] Length = 171 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 62/86 (72%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L YL S ++S+ +V+ ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VYVG Sbjct: 2 NLICYLLSVGTMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFLAFLLLLVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKR 90 A++V FLF++M+L ++ + + K + Sbjct: 62 AIMVLFLFVLMILMLNEDEWQGEKSK 87 >gi|257852734|gb|ACV71379.1| NADH dehydrogenase subunit 6 [Heterostemon otophorus] Length = 178 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IYEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSIILLVAMIGAIVLTMHRTTKVKRQDVFRR 172 >gi|257852596|gb|ACV71310.1| NADH dehydrogenase subunit 6 [Aneulophus africanus] Length = 178 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQEIFRR 172 >gi|29831389|ref|NP_826023.1| NADH dehydrogenase subunit J [Streptomyces avermitilis MA-4680] gi|29608504|dbj|BAC72558.1| putative NADH dehydrogenase I chain J (complex I) [Streptomyces avermitilis MA-4680] Length = 280 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 28/203 (13%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ +A+I + V ++ ++S L + A +L GA F+ ++ +VVY Sbjct: 14 EAFQFWILGTVAVIGALCTVLMKKAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVVYT 73 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121 GA+++ FLF++M++ + A K G ++ +VC F ++F+ G Sbjct: 74 GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLA------LVCGLGFGTLLFAGIGNA 124 Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S F G NVE + +++T+Y + EI+G +L+ + +GA+VL HR +R Sbjct: 125 SIKEFDGLGTANANGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLT--HRERTERA 182 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 ++L +V+ GK Sbjct: 183 KTQRELSEQ--------RVREGK 197 >gi|226953544|ref|ZP_03824008.1| NADH dehydrogenase I subunit J [Acinetobacter sp. ATCC 27244] gi|226835722|gb|EEH68105.1| NADH dehydrogenase I subunit J [Acinetobacter sp. ATCC 27244] Length = 173 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 57/82 (69%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ + E K Sbjct: 65 VLFVFVVMMLNLGQDTVEQESK 86 >gi|294649468|ref|ZP_06726892.1| NADH-quinone oxidoreductase subunit J [Acinetobacter haemolyticus ATCC 19194] gi|292824638|gb|EFF83417.1| NADH-quinone oxidoreductase subunit J [Acinetobacter haemolyticus ATCC 19194] Length = 173 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 57/82 (69%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ + E K Sbjct: 65 VLFVFVVMMLNLGQDTVEQESK 86 >gi|237751589|ref|ZP_04582069.1| NADH oxidoreductase I [Helicobacter bilis ATCC 43879] gi|229372955|gb|EEO23346.1| NADH oxidoreductase I [Helicobacter bilis ATCC 43879] Length = 203 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 96/184 (52%), Gaps = 17/184 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY+F + + + +VV N +Y++ +L F + +GLF LL A+F+ ++ ++VY Sbjct: 3 EAIAFYVFGALCLCAFLIVVMTNNILYALTALAFGMILVSGLFFLLNADFLGVVQIIVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+V + F +M+ D+ EV E R + F+ + I A L++ N + Sbjct: 63 GAVVVMYAFGMMLFDVSKEVKE-RFQNQFMVWLLVSIFAIGLLIVVGN--------TQTT 113 Query: 124 LVFKGNNVEN-IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + ++ +N N + +L+ Y E + +LL++MI I + H+ + + ES Sbjct: 114 IPYQNDNSTNALAHLLFKDYLVCFEAAAIMLLMAMIAGIGVG-SHKPEFTHE------ES 166 Query: 183 NPDN 186 N D+ Sbjct: 167 NKDS 170 >gi|297380449|gb|ADI35336.1| NAD(P)H-quinone oxidoreductase chain 6 [Helicobacter pylori v225d] Length = 182 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 20/185 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-L 121 GAVIV + F +M + EV E ++ L + G+ L LI+ A + GE L Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSI------GENL 116 Query: 122 SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRR 169 S+ V N++ IG VL+T Y P E + +LL++M+G I ++ H + Sbjct: 117 SKQVNSNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQ 176 Query: 170 DIKRQ 174 IK Sbjct: 177 FIKES 181 >gi|218509387|ref|ZP_03507265.1| hypothetical protein RetlB5_18674 [Rhizobium etli Brasil 5] Length = 118 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/50 (78%), Positives = 42/50 (84%) Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 SV LI F NAAGLFLLLGAEF+AMI LVVYVGAV V FLF++MMLDID Sbjct: 57 SVLFLILVFFNAAGLFLLLGAEFLAMILLVVYVGAVAVLFLFVVMMLDID 106 >gi|298489903|ref|YP_003720080.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 ['Nostoc azollae' 0708] gi|298231821|gb|ADI62957.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ['Nostoc azollae' 0708] Length = 205 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 4/197 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + M I ++ VV N +YS F L F++ AGL+LLL +FVA +++YV Sbjct: 8 QVISFGILGVMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQILIYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+ V LF IM+++ + + P G L +++ L S +V + S Sbjct: 68 GAINVLILFAIMLVNKRQDFS-PLPSAG-LRKIITSLVSIGLFGLLSTMVVATPWAYSSV 125 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQLE 181 V +++ IG+ +T + P E++ +LL++M+GAI+L R ++ D+ + + Sbjct: 126 PVAGESSIVLIGEHFFTDFLLPFELASILLLMAMVGAIILARREYLPDEVPSSDMPQTIL 185 Query: 182 SNPDNSIVMVKVKSGKG 198 + P+ +V SG G Sbjct: 186 TLPERPRELVSTGSGAG 202 >gi|282897415|ref|ZP_06305417.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Raphidiopsis brookii D9] gi|281198067|gb|EFA72961.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Raphidiopsis brookii D9] Length = 214 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 4/166 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +QS+ F + M I ++ VV N +YS F L F++ AGL+LLL +FVA +++Y Sbjct: 19 VQSVSFGILGAMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQVLIY 78 Query: 63 VGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGA+ V LF IM+++ + A P L G+++ L S ++ + G Sbjct: 79 VGAINVLILFAIMLVNKRQDFAAIPSAG---LRKIVTGVVSLGLFALLSTMVLATPWGNT 135 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + N+V IG+ L++ + P E++ +LL++M+GAI+L R Sbjct: 136 TTPPATQNSVVVIGEHLFSDFLLPFELASILLLIAMVGAIILARRE 181 >gi|257852620|gb|ACV71322.1| NADH dehydrogenase subunit 6 [Ricinus communis] Length = 180 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDLFRR 174 >gi|133900484|gb|ABO41408.1| NADH dehydrogenase subunit 6 [Koilodepas bantamense] Length = 181 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDLFRR 174 >gi|308183379|ref|YP_003927506.1| NADH dehydrogenase subunit J [Helicobacter pylori PeCan4] gi|308065564|gb|ADO07456.1| NADH dehydrogenase subunit J [Helicobacter pylori PeCan4] Length = 182 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQSPKILCALSFGVAILLTLILSAPSIGENLSKQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|257459157|ref|ZP_05624276.1| NADH-quinone oxidoreductase, j subunit [Campylobacter gracilis RM3268] gi|257443542|gb|EEV18666.1| NADH-quinone oxidoreductase, j subunit [Campylobacter gracilis RM3268] Length = 175 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 11/183 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q+L FY FS + + + V +N +Y++ +L V +G F LL AEF+ ++ ++VY Sbjct: 2 IQTLAFYFFSAVCLALFGISVFSKNVLYALSALAGGMVFMSGFFFLLDAEFLGVVQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M L D V EP+K R F G++A L++ A +V A Sbjct: 62 TGAVIVLYGFALMFLGADKNVNEPKKGARLFFA--LSGVIAFLLVIIALGAVV--ANNVE 117 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + + ++ E +G +++T+Y E++ +LL++MI AIV L H K+ D S E Sbjct: 118 TLKILNTDDTEALGMIIFTKYLAIFELAAVMLLVAMICAIV--LAH----KQMDASLTYE 171 Query: 182 SNP 184 + Sbjct: 172 ESE 174 >gi|164421164|ref|YP_001648648.1| NADH dehydrogenase subunit 6 [Hippospongia lachne] gi|158939006|gb|ABW83928.1| NADH dehydrogenase subunit 6 [Hippospongia lachne] Length = 169 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 62/88 (70%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F YL S ++S+ +V+ ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VY Sbjct: 1 MYLFFCYLLSVGIMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFIAFLLLLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 VGA++V FLF++M+L ++ + + K + Sbjct: 61 VGAIMVLFLFVLMILMLNEDELQGEKSK 88 >gi|317182518|dbj|BAJ60302.1| NADH dehydrogenase subunit J [Helicobacter pylori F57] Length = 182 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 20/185 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASNMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-L 121 GAVIV + F +M + EV E ++ L + G+ L LI+ A + GE L Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVALLLTLILSAPSI------GENL 116 Query: 122 SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRR 169 S+ V N+E IG VL+T Y P E + +LL++M+G I ++ H + Sbjct: 117 SKQVNSNAIDVQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQ 176 Query: 170 DIKRQ 174 IK Sbjct: 177 FIKES 181 >gi|109946836|ref|YP_664064.1| NADH dehydrogenase subunit J [Helicobacter acinonychis str. Sheeba] gi|109714057|emb|CAJ99065.1| NADH dehydrogenase I chain J [Helicobacter acinonychis str. Sheeba] Length = 182 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 95/179 (53%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVAVLLTLILSAPSIGENLSKQVNP 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + +N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDVQISNIKAIGYVLFTDYLIPFEAAALMLLVAMVGGIATGIQKIHGKSHAQFIKES 181 >gi|158604903|gb|ABW74727.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Campylobacter concisus 13826] Length = 178 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 98/179 (54%), Gaps = 16/179 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S FYLFS + ++S V +N + +V +L + + +F LLGAEF+ ++ +VVY Sbjct: 3 ESFAFYLFSALILVSFSFSVLCKNALNAVSALAAGMIFISAIFFLLGAEFLGVVQIVVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG-----FLGSFFIGILAAELIVCASNFMVFSAE 118 GAV+V + F +M D E EP+ + +L S FI +L + + ++SA+ Sbjct: 63 GAVVVLYAFAMMFFDTSKE-CEPKSGKKAKIIVYLLSSFIALLLIFIFLAP----IYSAK 117 Query: 119 GEL--SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 E+ S L G N+E +G +L+++Y E+ +LL++M+ I+L+ +D+ Q Sbjct: 118 QEVVNSTLANLG-NIEAVGILLFSKYLLAFEMCAIMLLVAMVAGIILI---HKDLDAQS 172 >gi|261839987|gb|ACX99752.1| NADH dehydrogenase subunit J [Helicobacter pylori 52] gi|317013057|gb|ADU83665.1| NADH dehydrogenase subunit J [Helicobacter pylori Lithuania75] Length = 182 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVAILLTLILSAPSIGENLSKQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|133900406|gb|ABO41369.1| NADH dehydrogenase subunit 6 [Carallia brachiata] Length = 179 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTYMRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|254416218|ref|ZP_05029972.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Microcoleus chthonoplastes PCC 7420] gi|196176900|gb|EDX71910.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Microcoleus chthonoplastes PCC 7420] Length = 208 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + S M I S+ VV + N +YS F L F++ AG +LLL A+FVA ++VYVGAV Sbjct: 12 FVILSVMMIGSALGVVLLNNIVYSAFLLGGVFISMAGFYLLLNADFVAAAQILVYVGAVN 71 Query: 68 VFFLFIIMMLDI--DIEVAEPRK-KRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSR 123 V LF IM+++ D + R ++G +G+ A +V + + ++S L Sbjct: 72 VLILFAIMLVNKREDFKPITNRWIRQGATALVCLGLFALLGTMVLVTPWSIYSGTAVLG- 130 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 +G+ VE IGK ++ + P E++ +LL++M+GAI+L RRD + + + S Sbjct: 131 ---EGSVVE-IGKHFFSDFLLPFELASVLLLMAMVGAIIL---ARRDFIPESLVPRDTSE 183 Query: 184 PDNS 187 + S Sbjct: 184 TEYS 187 >gi|260436292|ref|ZP_05790262.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 8109] gi|260414166|gb|EEX07462.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 8109] Length = 199 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 21/177 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + S + +I + VV + N +YS F L F AGL+LLL A FVAM ++VYVGA+ Sbjct: 12 FLVLSAVVVIGALGVVLLSNIVYSAFLLGGVFTAVAGLYLLLNASFVAMAQILVYVGAIN 71 Query: 68 VFFLFIIMMLDI--DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V LF IM+++ D++ R + + VC + + Sbjct: 72 VLILFAIMLVNKREDLKAIANLTTRRVVSAG----------VCVGLLALLVRVVVTTPWS 121 Query: 126 FKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G IG+ L+T Y P E++ +LL++MIGAIVL RRD+ D+ Sbjct: 122 LPGPAAVGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVL---ARRDVLATDV 175 >gi|257852658|gb|ACV71341.1| NADH dehydrogenase subunit 6 [Medusagyne oppositifolia] Length = 178 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|296274494|ref|YP_003657125.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Arcobacter nitrofigilis DSM 7299] gi|296098668|gb|ADG94618.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcobacter nitrofigilis DSM 7299] Length = 190 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLFS + I + V N +Y++ SL + + F LL A+F+ ++ +VVY GAVI Sbjct: 7 FYLFSILTIFMFGITVFTNNALYALSSLAAGMIFISAFFFLLNADFLGIVQIVVYTGAVI 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA------SNFMVFSAEGEL 121 + F +M D EV E + G + F LAA + V A SN ++ +E + Sbjct: 67 ALYAFGMMFFDSMSEVKEKIQNPGLV--FLFSGLAALITVVAFLSPIVSNNII--SEYAI 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ-- 179 + N +++G VL+T++ P EI+ +LL++MIG I+L + + D+ ++S+ Sbjct: 123 HP---EYGNTQDVGVVLFTKFLVPFEIAAVMLLVAMIGGIILAGK-KMDVSYSELSEDEI 178 Query: 180 --LESNPDNS 187 LES+ + Sbjct: 179 DALESSNEKD 188 >gi|172037137|ref|YP_001803638.1| NADH dehydrogenase subunit J [Cyanothece sp. ATCC 51142] gi|171698591|gb|ACB51572.1| NADH dehydrogenase subunit 6 [Cyanothece sp. ATCC 51142] Length = 208 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 10/171 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + II++ VV + N +YS F L F++ +G+++LL A+FVA +++Y Sbjct: 7 VQVISFAILAALVIIAALGVVLLENIVYSAFLLGGVFISISGIYVLLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAE-PRK--KRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VGAV V LF IM+++ + + P + KRG G+ A L+ +S E Sbjct: 67 VGAVNVLILFAIMLVNKKQDYSNLPGRWIKRGATALVCGGLFA--LLATMVLITPWSLES 124 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L+ N V IGK ++ + P E++ +LL++M+GAIVL RRD Sbjct: 125 NAPGLI--ENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVL---ARRD 170 >gi|330465211|ref|YP_004402954.1| NADH:ubiquinone oxidoreductase subunit J [Verrucosispora maris AB-18-032] gi|328808182|gb|AEB42354.1| NADH:ubiquinone oxidoreductase subunit J [Verrucosispora maris AB-18-032] Length = 256 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 102/203 (50%), Gaps = 14/203 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +A+ + ++ RN ++S L+ ++ ++L F+ M+ ++VY Sbjct: 17 EAVTFWILAPLALAGAIGMIAARNAVHSALWLVLTMLSLGVFYVLQAGPFIGMVQIIVYT 76 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ D IEV R +R + + +G+ A L+ + E Sbjct: 77 GAIMMLFLFVLMLVGRDASDSLIEVL--RGQR--IAAIGLGVGFAALLGSGAYRATQGTE 132 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G NV++I ++L+T Y + E++ +L+ + IG ++L RR R+D Sbjct: 133 AVGLEQANAGGNVQSIARLLFTDYIFAFELTAALLITATIGGMILAHVERRKEDRRDQVA 192 Query: 179 QLESN--PDNSIVMVKVKSGKGI 199 +++ P N K G G+ Sbjct: 193 TMKARFAPGN---YPGPKPGPGV 212 >gi|108563638|ref|YP_627954.1| NADH dehydrogenase subunit J [Helicobacter pylori HPAG1] gi|107837411|gb|ABF85280.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori HPAG1] Length = 182 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVAILLTLILSAPSIGENLSNQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|257852718|gb|ACV71371.1| NADH dehydrogenase subunit 6 [Stackhousia minima] Length = 180 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDVFRR 174 >gi|118472606|ref|YP_886415.1| NADH dehydrogenase subunit J [Mycobacterium smegmatis str. MC2 155] gi|118173893|gb|ABK74789.1| NADH dehydrogenase subunit j [Mycobacterium smegmatis str. MC2 155] Length = 252 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 95/182 (52%), Gaps = 12/182 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A++ + VV R +YS L ++ A L++ A F+ ++ +VVY Sbjct: 19 EAVVFWVVGTVALVGAIGVVAARKAVYSAVFLACTMISLAVLYIAQDAPFLGVVQIVVYT 78 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GAV++ FLF++M++ +D +E + + + GIL +I N V Sbjct: 79 GAVMMLFLFVLMLIGVDLTESLVETIKGHRIAALIAGAGFGIL---VIAGIGNVSVAGFS 135 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + G NVE + +++T+Y + E++ +L+ + +GA+VL HR +R+ + Sbjct: 136 GLAA--ANSGGNVEGLAALIFTRYLWAFELTSALLITAALGAMVLA--HRERFERRKTQR 191 Query: 179 QL 180 +L Sbjct: 192 EL 193 >gi|322379667|ref|ZP_08053985.1| NADH dehydrogenase subunit J [Helicobacter suis HS5] gi|321147903|gb|EFX42485.1| NADH dehydrogenase subunit J [Helicobacter suis HS5] Length = 181 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F+ + + + +VV+ N +Y++ +L + V +G F LLGAEF+ ++ ++VYVGAVI Sbjct: 7 FYFFAILTLSMALIVVSTSNILYAMSALAASMVFISGFFFLLGAEFLGVVQILVYVGAVI 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 V + F +M + EV E K LG F +L L A N E ++ Sbjct: 67 VMYAFGMMFFNASEEVIERSHKPWLVYILGGVFALLLVVILGAPALNNYAHHLSAENLQI 126 Query: 125 V---FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 V NV ++G ++T+Y E G +LL ++IG I LR ++++ Sbjct: 127 VTPNLSTTNVHSMGYFVFTKYRIAFEAGGVMLLSALIGGITTALRKSYLSQKEN 180 >gi|89895328|ref|YP_518815.1| NADH dehydrogenase I chain J [Desulfitobacterium hafniense Y51] gi|89334776|dbj|BAE84371.1| NADH dehydrogenase I chain J [Desulfitobacterium hafniense Y51] Length = 163 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 92/160 (57%), Gaps = 10/160 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++F+ +A+ S++ VVT +N ++S F L +F A L++LL AE++A + L+VY GA+ Sbjct: 2 FFIFAIIAVASAWGVVTSKNIVHSAFFLALSFAGVAVLYVLLNAEYLAAVQLLVYAGAIS 61 Query: 68 VFFLFIIMM-LDIDIEVAEPRKKR---GFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + +F +M+ L D+ + P K+ G L S + I+ A +I+ S++ + L+ Sbjct: 62 IMVIFAVMLTLRGDVAESSPVTKKWTQGALVSALVFIVLALVILTNSDWRI------LAM 115 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G + K+L + Y P E + ++ +++IGA+++ Sbjct: 116 PALAGGTTVELSKLLLSWYMVPFEAAAILITVALIGAVII 155 >gi|329935988|ref|ZP_08285788.1| NADH dehydrogenase subunit J [Streptomyces griseoaurantiacus M045] gi|329304466|gb|EGG48344.1| NADH dehydrogenase subunit J [Streptomyces griseoaurantiacus M045] Length = 284 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 99/187 (52%), Gaps = 20/187 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V +R ++S SL + A +L GA F+ ++ +VVY Sbjct: 26 EAVQFWILGTVAVIGALCTVFMRRAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVYT 85 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121 GA+++ FLF++M++ + A K G ++ +L C F ++ + G Sbjct: 86 GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLALL------CGLGFGVLLLAGIGNA 136 Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIK 172 S F G NV+ + +++T+Y + EI+G +L+ + +GA+VL R R R + Sbjct: 137 SLTQFDGLSEANAPGNVQGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALT 196 Query: 173 RQDISKQ 179 ++++S++ Sbjct: 197 QREMSER 203 >gi|284929387|ref|YP_003421909.1| NADH dehydrogenase subunit J [cyanobacterium UCYN-A] gi|284809831|gb|ADB95528.1| NADH dehydrogenase subunit J [cyanobacterium UCYN-A] Length = 207 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 23/191 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + IIS+ VV + N +YS F L F+ +GL++LL A+F+A +++Y Sbjct: 7 VQLVSFAILAGLVIISALGVVLLSNIVYSAFLLGGVFIGISGLYILLNADFIAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF IM+++ + + K +I +A ++VC F + S ++ Sbjct: 67 VGAINVLILFAIMLVNKKGDYSNSSKS-------WINRVAT-MMVCGGIFALLSTVVYMT 118 Query: 123 RLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI---- 171 + + V IG+ L++ Y P E++ +LL++M+GAIVL RRD+ Sbjct: 119 PWNVEAVVPEVLESTVIKIGRHLFSDYLLPFELASVLLLIAMVGAIVL---ARRDLIPEI 175 Query: 172 -KRQDISKQLE 181 + IS LE Sbjct: 176 YDSEGISTALE 186 >gi|254431361|ref|ZP_05045064.1| NAD(P)H-quinone oxidoreductase chain 6 [Cyanobium sp. PCC 7001] gi|197625814|gb|EDY38373.1| NAD(P)H-quinone oxidoreductase chain 6 [Cyanobium sp. PCC 7001] Length = 200 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 11/178 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F S ++ + VV + N +YS F L F++ AGL+L+L A FVA ++VYV Sbjct: 8 QFICFAALSATLVLGALGVVLLPNIVYSAFLLAGVFLSVAGLYLMLNASFVAAAQILVYV 67 Query: 64 GAVIVFFLFIIMMLDI--DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV V LF IM+++ D+ V + R L G L LI A + L Sbjct: 68 GAVNVLILFAIMLVNKREDLSVIKGLALRRALSGLVCGGLFVLLIRVA-----VTTPWAL 122 Query: 122 SRLVFKGNNVE-NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G IG+ L++ Y P E++ +LL++MIGAIVL RRD+ DI+ Sbjct: 123 PGPTPVGEEATIRIGEHLFSDYLLPFELASVLLLMAMIGAIVL---ARRDVFSADIAT 177 >gi|256785932|ref|ZP_05524363.1| NADH dehydrogenase subunit J [Streptomyces lividans TK24] gi|289769825|ref|ZP_06529203.1| NuoJ [Streptomyces lividans TK24] gi|289700024|gb|EFD67453.1| NuoJ [Streptomyces lividans TK24] Length = 285 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 98/183 (53%), Gaps = 12/183 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V ++ ++S L + A +L GA F+ ++ +VVY Sbjct: 19 EAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 78 Query: 64 GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + E + ++ L GIL LI N V Sbjct: 79 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGIL---LIAGIGNASVSEFT 135 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDI 176 G L++ G NVE I +++T+Y + EI+G +L+ + +GA+VL R R + R +++ Sbjct: 136 G-LAQANANG-NVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQREL 193 Query: 177 SKQ 179 S+Q Sbjct: 194 SEQ 196 >gi|125213990|dbj|BAF46418.1| NADH dehydrogenase subunit 6 [Rhodotorula glutinis] Length = 222 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 8/103 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ L + AI+S +V+T +NP+ SV LI F+N AG +LLG ++ ++ L+VY Sbjct: 1 MNNVLLDLLALGAILSGIMVITAKNPVISVLFLIAVFLNVAGYLVLLGVAYLGLVYLIVY 60 Query: 63 VGAVIVFFLFIIMMLDID----IEVAEPRKKR----GFLGSFF 97 VGA+ + FLF+IMML++ +E + K FLGS F Sbjct: 61 VGAIAILFLFVIMMLNLRLVELVETGQEYTKSLPMGAFLGSLF 103 >gi|124024376|ref|YP_001018683.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9303] gi|123964662|gb|ABM79418.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9303] Length = 200 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 21/160 (13%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI--DIEVA 84 N +YS F L F+ AGL+LLL A FVA ++VYVGAV V LF IM+++ D++ Sbjct: 31 NIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLVYVGAVNVLILFAIMLVNKREDLKPI 90 Query: 85 EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------NNVENIGKVL 138 E R L VCA F++F + G E IG+ L Sbjct: 91 EGLPIRRLLSGG----------VCAGLFVLFFRVVITTPWAVPGPAAIGVGATERIGEHL 140 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 +T Y P E++ +LL++MIGAIVL RRD+ D+ Sbjct: 141 FTDYLLPFELASVLLLMAMIGAIVL---ARRDVLETDVGT 177 >gi|33864283|ref|NP_895843.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9313] gi|33641063|emb|CAE22192.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9313] Length = 200 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 21/160 (13%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI--DIEVA 84 N +YS F L F+ AGL+LLL A FVA ++VYVGAV V LF IM+++ D++ Sbjct: 31 NIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLVYVGAVNVLILFAIMLVNKREDLKPI 90 Query: 85 EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------NNVENIGKVL 138 E R L VCA F++F + G E IG+ L Sbjct: 91 EGLPIRRLLSGG----------VCAGLFVLFFRVVITTPWAVPGPAAIGVGATERIGEHL 140 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 +T Y P E++ +LL++MIGAIVL RRD+ D+ Sbjct: 141 FTDYLLPFELASVLLLMAMIGAIVL---ARRDVLETDVGT 177 >gi|229099727|ref|ZP_04230653.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-29] gi|228683697|gb|EEL37649.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-29] Length = 153 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 4/147 (2%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F IM+ + E Sbjct: 8 MHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGIMLTKHNAENESRLT 67 Query: 89 KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 R ++ FF + ++ A N + FS E L N IG +LY++Y P E+ Sbjct: 68 LRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQIGTLLYSEYIIPFEL 126 Query: 149 SGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ILL++++GAI+L ++D K +D Sbjct: 127 TSVILLVALVGAIILA---KKDEKEED 150 >gi|217033590|ref|ZP_03439018.1| hypothetical protein HP9810_899g26 [Helicobacter pylori 98-10] gi|216943936|gb|EEC23370.1| hypothetical protein HP9810_899g26 [Helicobacter pylori 98-10] gi|261838592|gb|ACX98358.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 51] gi|317178437|dbj|BAJ56225.1| NADH dehydrogenase subunit J [Helicobacter pylori F30] Length = 182 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVAILLTLILSAPSIGENLSKQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|257852600|gb|ACV71312.1| NADH dehydrogenase subunit 6 [Codiaeum variegatum] Length = 180 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 25/178 (14%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI+ F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIG-----LILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDLFRR 174 >gi|119356795|ref|YP_911439.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium phaeobacteroides DSM 266] gi|119354144|gb|ABL65015.1| NADH dehydrogenase subunit J [Chlorobium phaeobacteroides DSM 266] Length = 172 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 11/160 (6%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FYLF+ + + S+ VV R+ IYS FSL+F F A L++LL A+F+A+ +VVYVG Sbjct: 7 TIIFYLFAAITVFSAAFVVFSRSVIYSAFSLLFTFFGTAALYVLLSADFIAVTQVVVYVG 66 Query: 65 AVIVFFLFIIM----MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 ++V LF +M ++ D++ G L F I L V + + + Sbjct: 67 GILVLLLFGVMFTNSIMQTDLKTDVLHVVPGTL--LFAAITGGMLYVFYT-----TGTWK 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 S + +G+ VE IG ++Y P E++ +LL +IGA Sbjct: 120 SSLVTLQGSVVERIGYETMSRYILPFEMASILLLAVLIGA 159 >gi|296040757|gb|ADG85346.1| NADH dehydrogenase subunit 6 [Silene vulgaris] Length = 157 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 23/163 (14%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA+ V FLF+ Sbjct: 1 LALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60 Query: 74 IMMLDIDI-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFS 116 +MM I I EV G +G F I +L + + + V++ Sbjct: 61 VMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYA 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 + V N+E +G +LYT Y +S ILL++MIG Sbjct: 121 GK------VRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIG 157 >gi|257852696|gb|ACV71360.1| NADH dehydrogenase subunit 6 [Fusispermum laxiflorum] Length = 180 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 88/178 (49%), Gaps = 25/178 (14%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----------ELSRLVFKG- 128 I R S IG LI F + E L V+ G Sbjct: 63 IAEIHEEVLRYLPVSAIIG-----LIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK 117 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 118 VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174 >gi|282900718|ref|ZP_06308660.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Cylindrospermopsis raciborskii CS-505] gi|281194518|gb|EFA69473.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Cylindrospermopsis raciborskii CS-505] Length = 202 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 18/203 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 QS+ F + M I ++ VV N +YS F L F++ AGL+LLL +FVA +++YV Sbjct: 8 QSVSFGILGAMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQVLIYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-------LGSFFIGILAAELIVCASNFMVFS 116 GA+ V LF IM+++ K++ F L G+++ L S ++ + Sbjct: 68 GAINVLILFAIMLVN---------KRQDFAVIPSAGLRKIVTGVVSLGLFALLSAMVLAT 118 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQ 174 G + N+V IG+ L++ + P E++ +LL++M+GAI+L R + Sbjct: 119 PWGNTTTPPATQNSVVVIGEHLFSDFLLPFELASILLLIAMVGAIILARREYLPDQVTPS 178 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 ++ + + + P+ +V + Sbjct: 179 ELPQTILTLPERPRELVSTTGNQ 201 >gi|229032925|ref|ZP_04188880.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1271] gi|228728470|gb|EEL79491.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1271] Length = 162 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTQHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|21222954|ref|NP_628733.1| NADH dehydrogenase subunit J [Streptomyces coelicolor A3(2)] gi|5042268|emb|CAB44522.1| NuoJ, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] Length = 285 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 98/183 (53%), Gaps = 12/183 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V ++ ++S L + A +L GA F+ ++ +VVY Sbjct: 19 EAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 78 Query: 64 GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + E + ++ L GIL LI N V Sbjct: 79 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGIL---LIAGIGNASVSEFT 135 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDI 176 G L++ G NVE I +++T+Y + EI+G +L+ + +GA+VL R R + R +++ Sbjct: 136 G-LAQANANG-NVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQREL 193 Query: 177 SKQ 179 S+Q Sbjct: 194 SEQ 196 >gi|133900452|gb|ABO41392.1| NADH dehydrogenase subunit 6 [Euphronia guianensis] Length = 181 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174 >gi|188528058|ref|YP_001910745.1| NADH dehydrogenase subunit J [Helicobacter pylori Shi470] gi|188144298|gb|ACD48715.1| NADH dehydrogenase subunit J [Helicobacter pylori Shi470] Length = 182 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 95/179 (53%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNF-MVFSAEGEL 121 GAVIV + F +M + EV E ++ L + G+ L LI+ A + S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSIGENLSNQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDVQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|229076507|ref|ZP_04209469.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock4-18] gi|228706693|gb|EEL58904.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock4-18] Length = 153 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 4/147 (2%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F IM+ + E Sbjct: 8 MHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGIMLTKHNAENESRLT 67 Query: 89 KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 R ++ FF + ++ A N + FS E L N IG +LY++Y P E+ Sbjct: 68 LRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQIGTLLYSKYIIPFEL 126 Query: 149 SGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ILL++++GAI+L ++D K +D Sbjct: 127 TSVILLVALVGAIILA---KKDEKEED 150 >gi|21673602|ref|NP_661667.1| NADH dehydrogenase I, subunit 6 [Chlorobium tepidum TLS] gi|21646716|gb|AAM72009.1| NADH dehydrogenase I, subunit 6 [Chlorobium tepidum TLS] Length = 173 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 6/172 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FY+F+ + ++S+ VV +N IYS FSL+F F A L++ L A+F+A+ +VVYVG Sbjct: 7 AIIFYIFAAVTVLSAAFVVFSKNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SR 123 ++V LF +M + + K L + GIL L++ F ++ + Sbjct: 67 GILVLLLFGVMFTN---TIMSTELKADVL-NVVPGILLTLLLIVGMLFTFYTTGSWMPGE 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + G+ V++IG ++Y P E+ +LL++++GA L R+ + K++ Sbjct: 123 MQLNGSVVQSIGLETMSRYMLPFEMFSIVLLVALLGAAYLA-RYDKANKKEH 173 >gi|317180995|dbj|BAJ58781.1| NADH dehydrogenase subunit J [Helicobacter pylori F32] Length = 182 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVAILLTLILSAPSIGENLSNQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|152990047|ref|YP_001355769.1| NADH dehydrogenase subunit J [Nitratiruptor sp. SB155-2] gi|151421908|dbj|BAF69412.1| NADH-quinone oxidoreductase, chain J [Nitratiruptor sp. SB155-2] Length = 184 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLF+ + I + V +N +YS+ +L V + F LL A+F+ ++ ++VY Sbjct: 3 EAIAFYLFAALTIFMFAVTVMSKNALYSMSALAAGMVFISAFFFLLDADFLGVVQIIVYG 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAE--PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M +D +V E P KK F F G++A L++ +V L Sbjct: 63 GAVMALYAFAMMFMDTTKDVKEKNPSKKIVF---FLSGMVALLLVIILLTPIVSDKVQAL 119 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + + N E +G VL+T+Y P E++ +LL++MI I+L + + I +++E Sbjct: 120 YPVSDEVGNAEAVGIVLFTKYLVPFELAAVMLLVAMIAGIILASKRMDESITLKIDQEIE 179 Query: 182 SN 183 Sbjct: 180 EK 181 >gi|133900540|gb|ABO41436.1| NADH dehydrogenase subunit 6 [Quiina pteridophylla] Length = 179 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|332674072|gb|AEE70889.1| NADH-ubiquinone oxidoreductase [Helicobacter pylori 83] Length = 184 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 5 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 64 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 65 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVAILLTLILSAPSIGENLSNQVNS 124 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 125 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 183 >gi|257852626|gb|ACV71325.1| NADH dehydrogenase subunit 6 [Tetrorchidium cf. macrophyllum Bell et al. 93-204] Length = 180 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 88/172 (51%), Gaps = 13/172 (7%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRLVFK--------GN 129 I R S IG IL E+ N + + + L +K Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTASLRYKVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHSPTHGAVKRQDLFRR 174 >gi|296040755|gb|ADG85345.1| NADH dehydrogenase subunit 6 [Silene paradoxa] Length = 157 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 82/160 (51%), Gaps = 17/160 (10%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA+ V FLF+ Sbjct: 1 LALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60 Query: 74 IMMLDIDI-----EVAEPRKKRGFLGSFFIG----ILAAELIVCASNFMVFSAEGELSRL 124 +MM I I EV G +G F IL E I L Sbjct: 61 VMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPT---HRNTTSLRYT 117 Query: 125 VFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 V+ G N+E +G +LYT Y +S ILL++MIG Sbjct: 118 VYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIG 157 >gi|257852676|gb|ACV71350.1| NADH dehydrogenase subunit 6 [Froesia diffusa] Length = 178 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|308064047|gb|ADO05934.1| NADH dehydrogenase subunit J [Helicobacter pylori Sat464] Length = 182 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 20/185 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-L 121 GAVIV + F +M + EV E ++ L + G+ L LI+ A + GE L Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSI------GENL 116 Query: 122 SRLVFKGN------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRR 169 S V N++ IG VL+T Y P E + +LL++M+G I ++ H + Sbjct: 117 SNQVNSNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQ 176 Query: 170 DIKRQ 174 IK Sbjct: 177 FIKES 181 >gi|299737838|ref|XP_002910006.1| NADH dehydrogenase subunit 6 [Coprinopsis cinerea okayama7#130] gi|298402998|gb|EFI26512.1| NADH dehydrogenase subunit 6 [Coprinopsis cinerea okayama7#130] Length = 250 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 58/82 (70%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++LF L +F ++SS L +T +NP+ SV LI FV+AAG +L+G +F+ + +V Sbjct: 1 MNIKTLFINLLAFGTLLSSILTITAKNPVISVIFLISTFVSAAGYLILIGIQFLGLSYIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE 82 +YVGA+ V FLF+IMM++I + Sbjct: 61 IYVGAIAVLFLFVIMMINIKLT 82 >gi|257852678|gb|ACV71351.1| NADH dehydrogenase subunit 6 [Touroulia guianensis] Length = 178 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +VV +NP++SV I F +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|218245873|ref|YP_002371244.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 8801] gi|257058921|ref|YP_003136809.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 8802] gi|218166351|gb|ACK65088.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 8801] gi|256589087|gb|ACU99973.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 8802] Length = 206 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 101/182 (55%), Gaps = 14/182 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + S + I ++ VV + N +YS F L F++ +G+++LL A+FVA +++Y Sbjct: 7 VQIVSFAILSVLVIAAALGVVLLSNIVYSAFLLGGVFISISGIYILLNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAE-PRK--KRGFLGSFFIG--ILAAELIVCASNFMVFSA 117 VGAV V LF IM+++ + + PR+ ++G +G IL + +I+ + ++ Sbjct: 67 VGAVNVLILFGIMLVNKQEDFSTLPRRWIRQGATALVCVGIFILLSTMILVTPWSISTTS 126 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 G + N + +GK ++ + P E++ +LL++M+GAI+L RRD+ + Sbjct: 127 PGVIE------NTIIELGKHFFSDFLLPFELASVLLLMAMVGAIIL---ARRDLIPDTLP 177 Query: 178 KQ 179 Q Sbjct: 178 TQ 179 >gi|206890506|ref|YP_002248944.1| NADH-quinone oxidoreductase chain j [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742444|gb|ACI21501.1| NADH-quinone oxidoreductase chain j [Thermodesulfovibrio yellowstonii DSM 11347] Length = 171 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 14/174 (8%) Query: 6 LFFYLFSFMAIIS---SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + +++F++ + + S + +T +NP+++V L+ F++ A ++L L AEF+AM+ ++VY Sbjct: 1 MIYFIFAYFCLATLGISIMSLTRKNPVHAVLWLLLLFLHVAVIYLFLNAEFLAMVQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-EGEL 121 GA++V FLF + +L P+ KR S G L L + A+ VFS+ + E Sbjct: 61 AGAILVMFLFTLFLLGAR---QLPKHKR--YTSILEGRLLIGLSITATLLAVFSSIKAEY 115 Query: 122 S-----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S + V N + IG +L+ +Y+ + I G ILL+ MI VL R + D Sbjct: 116 SGKYTIKYVHDVGNTKAIGAMLFNEYSLAVLILGVILLIPMIAVSVLAWRRKDD 169 >gi|163781780|ref|ZP_02176780.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] gi|159883000|gb|EDP76504.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] Length = 159 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 94/165 (56%), Gaps = 13/165 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ L F+L + S V V++P++S+ + A + AG+FL LGAE +A + L+ Sbjct: 1 MILGVLGFWLLA-----SVLGAVLVKSPVHSILFFLSAVLAMAGIFLSLGAELLAGLQLI 55 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE- 118 +Y A++VF++ +I + + ++ E +R FL +G+ ++ +MV + Sbjct: 56 IYAVAIVVFYVLVITTIPWEKVKRFEGVYRREFL----MGLPVVLVVFALMGYMVLKGKL 111 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + S V +NV +GK L+T Y +P E++ ILL++MIGAI+L Sbjct: 112 AQPSEAV--QDNVRELGKTLFTSYLFPFEVASVILLVAMIGAILL 154 >gi|210135428|ref|YP_002301867.1| NADH dehydrogenase subunit J [Helicobacter pylori P12] gi|210133396|gb|ACJ08387.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori P12] Length = 182 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQNPKILCVLSFGVALLLTLILSAPSIGENLSKQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|16332084|ref|NP_442812.1| NADH dehydrogenase subunit J [Synechocystis sp. PCC 6803] gi|2506948|sp|P26523|NU6C_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName: Full=NAD(P)H dehydrogenase I, chain 6; AltName: Full=NDH-1, chain 6 gi|1001393|dbj|BAA10883.1| NADH dehydrogenase subunit 6 [Synechocystis sp. PCC 6803] Length = 198 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 23/178 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + +F+ I ++ VV + N +YS F L F++ +G+++LL A+FVA ++VY Sbjct: 7 VQYISFLILAFLVIGAALGVVLLSNIVYSAFLLGGVFLSISGIYILLNADFVAAAQVLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNF-----MV 114 VGAV V LF IM+++ K+ F G + + A +VC F MV Sbjct: 67 VGAVSVLILFAIMLVN---------KREDFSKIPGRWLRNVSTA--LVCTGIFALLSTMV 115 Query: 115 FSAEGELSRL-VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 +++ F N + IGK ++ Y P E++ +LL++M+GAI+L RRD+ Sbjct: 116 LITPWQINETGPFVENTLVTIGKHFFSDYLLPFELASVLLLMAMVGAIIL---ARRDL 170 >gi|302553435|ref|ZP_07305777.1| NADH dehydrogenase subunit J [Streptomyces viridochromogenes DSM 40736] gi|302471053|gb|EFL34146.1| NADH dehydrogenase subunit J [Streptomyces viridochromogenes DSM 40736] Length = 280 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 100/203 (49%), Gaps = 28/203 (13%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + + ++ ++S L + A +L GA F+ ++ ++VY Sbjct: 14 EAVQFWILGTVAVIGALGTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVVQIIVYT 73 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121 GA+++ FLF++M++ + A K G ++ +L C F ++F+ G Sbjct: 74 GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLALL------CGLGFGILLFAGIGNA 124 Query: 122 SRLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S F G NV+ I +L+T+Y + EI+G +L+ + +GA+VL HR +R Sbjct: 125 SLKEFNGIGQANAGGNVQGIAALLFTRYVFAFEITGALLITAAVGAMVLT--HRERTERA 182 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 ++L +V+ GK Sbjct: 183 KTQRELAEE--------RVREGK 197 >gi|133900428|gb|ABO41380.1| NADH dehydrogenase subunit 6 [Denhamia celastroides] Length = 181 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTKRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDVFRR 174 >gi|24080118|ref|NP_705909.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. grubii] gi|22536162|gb|AAN01231.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. neoformans] gi|23630297|gb|AAN37587.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. grubii] Length = 202 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 39/80 (48%), Positives = 53/80 (66%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + L +F A++S LV+T NP+ SV LI FVNAAG +LLG FV + L+VY Sbjct: 1 MNTFLLDLLAFGAVLSGVLVITSVNPVISVLFLISVFVNAAGYLVLLGVGFVGISYLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIE 82 VGA+ + FLF++MML+I I Sbjct: 61 VGAIAILFLFVVMMLNISIT 80 >gi|296268282|ref|YP_003650914.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Thermobispora bispora DSM 43833] gi|296091069|gb|ADG87021.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobispora bispora DSM 43833] Length = 296 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 105/184 (57%), Gaps = 14/184 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S+ F++ + ++++++F +V R +YS L ++ A L+ + A F+A + ++VY Sbjct: 3 ESITFWVLAVVSVLAAFGLVLSRKAVYSALMLGVVMLSLAVLYAVQDAPFLAAVQIIVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVA--EPRKKRGFL----GSFFIGILAAELIVCASNFMVFSA 117 GAV++ FLF++M++ +D + E K + F G F+ +L + N V +A Sbjct: 63 GAVMMLFLFVLMLIGVDTSDSLVETIKGQRFWAIVAGLGFVALLG----LAVGNVAVSAA 118 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK--RQD 175 G K +NV ++ ++++T++ + E++ +L+ + +GA+VL R RR K ++D Sbjct: 119 TGLGEE--GKASNVLSLAELIFTRHVFAFEVTSALLITAALGAMVLAHRERRTPKPTQKD 176 Query: 176 ISKQ 179 +S++ Sbjct: 177 LSRR 180 >gi|297192778|ref|ZP_06910176.1| NADH dehydrogenase subunit J [Streptomyces pristinaespiralis ATCC 25486] gi|197721033|gb|EDY64941.1| NADH dehydrogenase subunit J [Streptomyces pristinaespiralis ATCC 25486] Length = 279 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 101/199 (50%), Gaps = 18/199 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + + ++ ++S L + A +L GA F+ ++ +VVY Sbjct: 13 EAVQFWVLGTIAVIGALCTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVVYT 72 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + + E K + +L + GIL LI N + + Sbjct: 73 GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGIL---LIAGIGNASLKNFN 129 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + G NVE + +++T+Y + EI+G +L+ + +GA+VL HR +R + Sbjct: 130 GLGAANSAHGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLT--HRERTERAKTQR 187 Query: 179 QLESNPDNSIVMVKVKSGK 197 +L +V+ GK Sbjct: 188 ELSEQ--------RVREGK 198 >gi|268678789|ref|YP_003303220.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfurospirillum deleyianum DSM 6946] gi|268616820|gb|ACZ11185.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfurospirillum deleyianum DSM 6946] Length = 184 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 94/168 (55%), Gaps = 3/168 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY+FS + + +VV +N +Y++ +L + +G F +L AEF+ ++ +VVY Sbjct: 3 ETVAFYIFSILTLGMFGIVVMSKNALYAMSALAGGMIFISGFFFILDAEFLGVVQIVVYS 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA++ + F +M D +V+E + + ++ + I++A LIV + S E S Sbjct: 63 GAIMALYAFGMMFFDTTRDVSEKMRSKKI--AYTLSIVSAVLIVAILCMPLVSESIEASY 120 Query: 124 LVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + N++ +G +L+T+Y P E++ +LL++MI IVL + + Sbjct: 121 PAIENVGNIQMVGLILFTKYLVPFELAAIMLLVAMISGIVLASKKMDE 168 >gi|15612255|ref|NP_223908.1| NADH dehydrogenase subunit J [Helicobacter pylori J99] gi|4155780|gb|AAD06756.1| NADH oxidoreductase I [Helicobacter pylori J99] Length = 182 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|301347607|ref|ZP_07228348.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB056] Length = 168 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 56/81 (69%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++V Sbjct: 1 YLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIMV 60 Query: 69 FFLFIIMMLDIDIEVAEPRKK 89 F+F++MML++ E +K Sbjct: 61 LFVFVVMMLNLGQHTVEQERK 81 >gi|257852686|gb|ACV71355.1| NADH dehydrogenase subunit 6 [Paradrypetes subintegrifolia] Length = 178 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLFLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|229187519|ref|ZP_04314660.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BGSC 6E1] gi|228595958|gb|EEK53637.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BGSC 6E1] Length = 162 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESAQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|133900450|gb|ABO41391.1| NADH dehydrogenase subunit 6 [Euonymus alatus] Length = 181 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y+ + ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDVFRR 174 >gi|317009953|gb|ADU80533.1| NADH dehydrogenase subunit J [Helicobacter pylori India7] Length = 182 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 95/179 (53%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNF-MVFSAEGEL 121 GAVIV + F +M + EV E ++ L + G+ L LI+ A + S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVALLLTLILSAPSIGENLSNQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDVQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKSHTQFIKES 181 >gi|133900550|gb|ABO41441.1| NADH dehydrogenase subunit 6 [Sapria himalayana] Length = 180 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASN--FMVFSAEGELSRL---VFKGN----- 129 I R S IG IL E+ N + + + + L V+ GN Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFLLDNESIPLLPTQRKTTSLGYTVYAGNIRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 N+E +G +LYT Y + +LL++MIGAIVL + HR +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLLLLVAMIGAIVLTM-HRTTHSAVKRQDLFRR 174 >gi|56750217|ref|YP_170918.1| NADH dehydrogenase subunit J [Synechococcus elongatus PCC 6301] gi|56685176|dbj|BAD78398.1| NADH dehydrogenase subunit 6 [Synechococcus elongatus PCC 6301] Length = 201 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 19/204 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + ++++ VV N +YS F L AF++ AGL+LLL A FVA +++Y Sbjct: 7 VQLVTFIILTAGVVLAALGVVLSSNIVYSAFLLGGAFISIAGLYLLLNASFVAFAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK----KRGFLGSFFIGILA-AELIVCASNFMVFSA 117 VGAV V LF IM+++ E P K ++G G+ A L V ++ + V Sbjct: 67 VGAVNVLILFAIMLVN-KREDFRPLKFNWLRKGLTVLVCGGLFALLSLTVISTPWAVTPT 125 Query: 118 EGELSRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G G+ + IG+ ++ Y P E++ +LL++MIGAIVL RRD + +D+ Sbjct: 126 PGA------SGDEAIYLIGEHFFSDYLLPFELASVLLLMAMIGAIVL---ARRDFEPEDL 176 Query: 177 SKQLESN---PDNSIVMVKVKSGK 197 ++ P+ S + +GK Sbjct: 177 ITGAAADLQLPERSREELLTGAGK 200 >gi|307637940|gb|ADN80390.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 908] gi|325996544|gb|ADZ51949.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 2018] gi|325998133|gb|ADZ50341.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 2017] Length = 182 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTHFIKES 181 >gi|317011469|gb|ADU85216.1| NADH dehydrogenase subunit J [Helicobacter pylori SouthAfrica7] Length = 182 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQNPKILCILSFGVALLLTLILSAPSISENLSKQVNP 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTDYLIPFEAAALMLLVAMVGGIATGIQKIHGKSHAQFIKES 181 >gi|217032332|ref|ZP_03437828.1| hypothetical protein HPB128_132g30 [Helicobacter pylori B128] gi|298735707|ref|YP_003728232.1| NADH dehydrogenase I subunit J [Helicobacter pylori B8] gi|216945998|gb|EEC24612.1| hypothetical protein HPB128_132g30 [Helicobacter pylori B128] gi|298354896|emb|CBI65768.1| NADH dehydrogenase I chain J [Helicobacter pylori B8] Length = 182 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVAVLLTLILSAPSIGENLSNQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|325105658|ref|YP_004275312.1| NADH dehydrogenase subunit J [Pedobacter saltans DSM 12145] gi|324974506|gb|ADY53490.1| NADH dehydrogenase subunit J [Pedobacter saltans DSM 12145] Length = 167 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 98/167 (58%), Gaps = 10/167 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +F++I S LV+ +NP++SV LI F ++LL A+F+A++ +VY+GA++ Sbjct: 4 FYFVAFLSIFFSLLVIFTKNPVHSVLYLIATFFTFTIHYILLNAQFLAVVNFIVYMGAIM 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFSAEGELSR 123 V FLF++M+++++ + EP K +G++A +V A M + L Sbjct: 64 VLFLFVLMLMNLNKD-TEPMKSNLLK---IVGVIAGGGLLVTLVAAMKTMYTDSPSVLQN 119 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + V+N+GKVL++++ P E+S +LL +M+GA++L + +R Sbjct: 120 P--EIGLVKNLGKVLFSEFLLPFELSSLLLLSAMVGAVLLAKQEKRT 164 >gi|284794760|ref|YP_003412113.1| NADH dehydrogenase subunit 6 [Phaeoceros laevis] gi|254596080|gb|ACT75321.1| NADH dehydrogenase subunit 6 [Phaeoceros laevis] Length = 201 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 23/204 (11%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + S +A++S +N ++ V LI F N +GL +LLG + AMI LVVY GA Sbjct: 2 ILFSVPSSIALVSGVTATRAKNLVHFVLFLIPVFRNTSGLLVLLGLDSFAMIFLVVYAGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGF-----------------LGSFFIGILAAELIVC 108 + + M +I I R + + +I IL +L Sbjct: 62 IAASSPSVAMTSNIKIAEIHENVLRYLPVGGIIGLILLLEIFFIVDNDYIPILPTKLSTA 121 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + V++ + + N+E +G +LYT Y S FILL++MIGA VL + Sbjct: 122 YLTYTVYAGKIQ------SWTNLETLGNLLYTTYFTLFLFSSFILLVAMIGATVLTMHKT 175 Query: 169 RDIKRQDISKQLESNPDNSIVMVK 192 +KRQD+ +Q + N+I ++ Sbjct: 176 TRVKRQDVFRQNARDFQNTIKKIR 199 >gi|251799768|ref|YP_003014499.1| NADH dehydrogenase subunit J [Paenibacillus sp. JDR-2] gi|247547394|gb|ACT04413.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus sp. JDR-2] Length = 171 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 11/160 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++FS + II + L+V+++ ++ V S+ F+ AG+F+LL AEFVA + +++Y GAV Sbjct: 13 FFIFSAIMIIGAVLMVSLQKVVHMVISMAAVFLGLAGMFVLLDAEFVAFVQVLIYAGAVS 72 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG----ELSR 123 + +F IMM + + A+P K LAA +C + ++ + Sbjct: 73 ILMIFGIMMTNHQNKQADPVKPLH-------ETLAAVGALCLFGILFYAIRTTDFPDAQP 125 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 L +N +IG++LYT Y P E+ +L ++ IGAI + Sbjct: 126 LQAVEDNTSSIGQLLYTGYVVPFELLSVLLTVAFIGAIAI 165 >gi|254424929|ref|ZP_05038647.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Synechococcus sp. PCC 7335] gi|196192418|gb|EDX87382.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Synechococcus sp. PCC 7335] Length = 197 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 14/171 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F L + ++ + VV + + +YS F L F++ AG ++LL A FVA +++Y Sbjct: 5 VQVVSFGLLGLIMVVGALGVVLLSSIVYSAFLLGLVFISIAGFYILLNAGFVAAAQVLIY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117 VGAV V LF IM+++ + E K ++G AA VCA F MV S Sbjct: 65 VGAVNVLILFGIMLVNKQEDFIE--VKNAWIGK------AATGAVCAGLFGLLSTMVLSH 116 Query: 118 EGELSRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +S G+ +E IG+ ++ Y P E++ +LL++++GAI+L R Sbjct: 117 PWAISSAPAAGDKAIEVIGQHFFSDYLLPFELASVLLLIALVGAIILARRE 167 >gi|156933130|ref|YP_001437046.1| NADH dehydrogenase subunit J [Cronobacter sakazakii ATCC BAA-894] gi|156531384|gb|ABU76210.1| hypothetical protein ESA_00940 [Cronobacter sakazakii ATCC BAA-894] Length = 187 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 105/185 (56%), Gaps = 16/185 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY GA++ Sbjct: 5 FYICALVAVLTTARVITHSNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFI--GILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ V R++R +L +I GIL+A L+V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLGDSVV--RQEREWLKPQIWIGPGILSAVLLVV----IVYAILG-VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 +GN + + +GK L+ Y +E++ +LL ++ A L R+ K D+ Sbjct: 118 GIEGNPISAKAVGKDLFQTYVLAVELASMLLLAGLVVAFHL----GREEKAGDVVSVRGG 173 Query: 183 NPDNS 187 P ++ Sbjct: 174 APSDA 178 >gi|15645883|ref|NP_208061.1| NADH dehydrogenase subunit J [Helicobacter pylori 26695] gi|2314434|gb|AAD08313.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Helicobacter pylori 26695] Length = 182 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVVERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|41582338|gb|AAS07952.1| NADH-quinone oxidoreductase, J subunit [uncultured marine bacterium 463] Length = 169 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 14/176 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+ + +A+ S+ +T N +++ LI + + A +F L+GA F A + +V+Y Sbjct: 1 MLATLFYIAALIALTSTMAALTRANAAHALIYLIVSLLAVAVMFFLMGAPFAAALEVVIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS--FFIGILAAELIVCASNFMVFSAEGE 120 GA++V F+F+IMML++ + E R++ G F G +AA L++ MV G+ Sbjct: 61 AGAIMVLFVFVIMMLNLG-DTGEDREREWLAGRNWFVPGAMAALLLI--EMLMVL---GD 114 Query: 121 LSRLVFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S+ V GN V + +G L+ Y +EI+ +LL S++GA L RR I R+ Sbjct: 115 -SQGVTSGNAVSPKAVGIRLFGPYLLAVEIASMLLLSSLVGAYHL---GRRFIVRR 166 >gi|164565466|ref|YP_001649183.1| NADH dehydrogenase subunit 6 [Seriatopora hystrix] gi|164565480|ref|YP_001649196.1| NADH dehydrogenase subunit 6 [Seriatopora caliendrum] gi|148669052|gb|ABR01610.1| NADH dehydrogenase subunit 6 [Seriatopora hystrix] gi|148669076|gb|ABR01623.1| NADH dehydrogenase subunit 6 [Seriatopora caliendrum] Length = 187 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 101/186 (54%), Gaps = 13/186 (6%) Query: 7 FFYLFSFMAIISS-FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 FF F + II S +VV+ NP+ S+F L+ F+N+A FLLLG +F+A++ L++YVGA Sbjct: 3 FFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS----------NFMVF 115 + + FLF+IM+L ++ P KR + +I I I S +F + Sbjct: 63 IAILFLFVIMLL--NLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLFLGSFQIE 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + + +N+E +G++LY L ++ FILL++MIG IVL K+QD Sbjct: 121 NWDLSFPWFLISYHNIEALGQILYVSGFCLLLLASFILLVAMIGVIVLTQETEFLSKKQD 180 Query: 176 ISKQLE 181 + Q+ Sbjct: 181 LFFQIN 186 >gi|195953126|ref|YP_002121416.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobaculum sp. Y04AAS1] gi|195932738|gb|ACG57438.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobaculum sp. Y04AAS1] Length = 165 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 91/161 (56%), Gaps = 5/161 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L F + S +AI+S+ + V++PI+ + + ++ A F L A+ +A + LV+Y Sbjct: 1 MELLVFVVISIIAIVSALGAILVKSPIHVMVWFLGFILSVAASFFALKADLLAGLQLVIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL-IVCASNFMVFSAEGEL 121 A++VF++ +I + + + + GF F+ L A L + AS ++V S+ Sbjct: 61 AVAIVVFYVLVITTIPWE----KVKMFEGFYKKEFVFALPAFLFTIGASIYLVISSRFSN 116 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 R +NV +G VL+T+Y P E++ FILL++MIGAI+ Sbjct: 117 LRQPLPKDNVSALGTVLFTKYIAPFELASFILLIAMIGAII 157 >gi|78778013|ref|YP_394328.1| NADH dehydrogenase subunit J [Sulfurimonas denitrificans DSM 1251] gi|78498553|gb|ABB45093.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sulfurimonas denitrificans DSM 1251] Length = 190 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 100/185 (54%), Gaps = 13/185 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLF+F+ I ++ VT +Y++ +L + + F +LGA+F+ + +VVY Sbjct: 3 EAIAFYLFAFLTIAMFYIAVTTSQALYALSALAAGMIFISAFFFILGADFLGAVQIVVYS 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI--LAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M D EV E + + + IG+ LAA ++V + + E Sbjct: 63 GAVMALYAFGMMFFDTTREVKEKQGNKAIV----IGLSSLAALMVVIIVAAPIVGSNIEA 118 Query: 122 SRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + +G NV+ +G VL+T+Y P E++ +LL++MI IVL K+ D+S L Sbjct: 119 LYPMSEGVGNVQEVGMVLFTKYLVPFEVAAVMLLVAMIAGIVL------AGKKMDLSLTL 172 Query: 181 ESNPD 185 S+ + Sbjct: 173 MSDSE 177 >gi|317968122|ref|ZP_07969512.1| NADH:ubiquinone oxidoreductase subunit J [Synechococcus sp. CB0205] Length = 199 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 13/177 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F S I + VV + + +YS F L F++ AGL+LLL A FVA ++VYV Sbjct: 8 QFICFVCLSAAVAIGALGVVLLPSIVYSAFLLGGVFLSVAGLYLLLNASFVAAAQVLVYV 67 Query: 64 GAVIVFFLFIIMMLDI--DIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEGE 120 GAV V LF IM+++ D+ R FL G+ G+ A L V F+ Sbjct: 68 GAVNVLILFAIMLVNKKEDLAAIPGLAVRRFLSGAVCAGLFALLLRV------AFTTPWA 121 Query: 121 LSRLVFKGNNVE-NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 L G IG+ L++ Y P E++ +LL++MIGAIVL RRD+ D+ Sbjct: 122 LPGPTPIGEEATIRIGEHLFSDYLLPFELASVLLLMAMIGAIVL---ARRDVFSTDV 175 >gi|290958251|ref|YP_003489433.1| NADH dehydrogenase subunit NuoJ [Streptomyces scabiei 87.22] gi|260647777|emb|CBG70882.1| NuoJ, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length = 283 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 98/203 (48%), Gaps = 28/203 (13%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ +A+I + V ++ ++S L V A +L GA F+ ++ +VVY Sbjct: 19 EAFQFWVLGTVAVIGALCTVFMKRAVHSALCLAGTMVILAVFYLANGAYFLGIVQIVVYT 78 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121 GA+++ FLF++M++ + A K G ++ +L C + F ++ + G Sbjct: 79 GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLALL------CGAGFGILLIAGIGNA 129 Query: 122 SRLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 S F G NVE + +++T Y + E++G +L+ + +GA+VL HR +R Sbjct: 130 SLTEFSGLGTANAGGNVEGLAALIFTDYVFAFELTGALLITAAVGAMVLT--HRERTERP 187 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 ++L +V+ GK Sbjct: 188 KTQRELAEQ--------RVREGK 202 >gi|227537462|ref|ZP_03967511.1| possible NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|227242736|gb|EEI92751.1| possible NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] Length = 182 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ L FY F+ +AI S+ LVV ++N ++F AGL+L A+FVA+ ++ Sbjct: 1 MTLEELLFYAFAALAIGSALLVVNLKNTARALFLFFIVLFAMAGLYLFALADFVAITQIM 60 Query: 61 VYVGAVIVFFLFIIMM----LDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCAS 110 VYVG V++ +F M+ L D++ A P + L S F+ I+ ++ S Sbjct: 61 VYVGGVLILMIFAFMLSNKELLKDLQHASGKFLTLPNWQSLILSSVFLIIMITAVVEWQS 120 Query: 111 NFMVFSAEGELSRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 + + ++ + NN++ +G TQY P E+ G L++++IGA Sbjct: 121 EVPAWIEQARINNTLIHPSDNNIQQLGFKFMTQYILPFELIGIFLMMTLIGA 172 >gi|292559473|ref|YP_003540841.1| NADH dehydrogenase subunit 6 [Hartmannella vermiformis] gi|290775726|gb|ADD62225.1| NADH dehydrogenase subunit 6 [Hartmannella vermiformis] Length = 205 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 114/201 (56%), Gaps = 15/201 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ + +FF L +FM ++ LV+ +NP+ SV L+ F +A LF+LL +F+AM+ ++ Sbjct: 1 MLTEVIFFGL-AFMIFLAGLLVIFSKNPVQSVLFLVVVFCLSAQLFVLLEVDFLAMVLII 59 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGA+ V FLFI+MML+I +E++E + L + I+ +E++ + ++ Sbjct: 60 VYVGAIAVLFLFIVMMLNIRVVELSEILNRYFPLATIVGLIIFSEIVFSLYYSLGYNYSN 119 Query: 120 ----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD----- 170 + + +NV ++G VLYT ++ L ISG +LLL+MI +I+L L Sbjct: 120 IFYLDWYKSFLNHSNVVSLGLVLYTYFSPFLIISGILLLLAMISSIMLTLDLPNSGELNL 179 Query: 171 ---IKRQDISKQLESNPDNSI 188 +K+Q I Q++ P N + Sbjct: 180 STLVKKQSIPDQVD-RPTNDL 199 >gi|133900522|gb|ABO41427.1| NADH dehydrogenase subunit 6 [Pera bicolor] Length = 183 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 16/175 (9%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-----HRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +R +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTPLNRNAVKRQDIFRR 177 >gi|257852668|gb|ACV71346.1| NADH dehydrogenase subunit 6 [Heywoodia lucens] Length = 180 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 91/173 (52%), Gaps = 15/173 (8%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQD+ ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDVFRR 174 >gi|257852716|gb|ACV71370.1| NADH dehydrogenase subunit 6 [Siphonodon celastrineus] Length = 180 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 27/176 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDI 176 V N+E +G +LYT Y+ + ILL++MIGAIVL + HR +KRQD+ Sbjct: 118 -VRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HRTTHGAVKRQDV 171 >gi|317014661|gb|ADU82097.1| NADH:ubiquinone oxidoreductase subunit J [Helicobacter pylori Gambia94/24] Length = 182 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTHFIKES 181 >gi|308185017|ref|YP_003929150.1| NADH dehydrogenase subunit J [Helicobacter pylori SJM180] gi|308060937|gb|ADO02833.1| NADH dehydrogenase subunit J [Helicobacter pylori SJM180] Length = 182 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 181 >gi|320009195|gb|ADW04045.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces flavogriseus ATCC 33331] Length = 284 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 96/185 (51%), Gaps = 10/185 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A++ + V ++ ++S SL + A +L GA F+ ++ +VVY Sbjct: 16 EAVQFWILGTVAVVGALSTVLMKKAVHSALSLAGTMIVLAVFYLANGAYFLGIVQVVVYT 75 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + + E K + +L + GIL LI + S Sbjct: 76 GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGIL---LIAGIGQASLQSFN 132 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + G NVE + +++T+Y + EI+G +L+ + +GA ++L HR +R + Sbjct: 133 GLGAANAQHGGNVEGLANLIFTKYVFAFEITGALLITATVGA--MLLTHRERTERAKTQR 190 Query: 179 QLESN 183 +L Sbjct: 191 ELSQE 195 >gi|257852720|gb|ACV71372.1| NADH dehydrogenase subunit 6 [Lepidobotrys staudtii] Length = 169 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 23/169 (13%) Query: 28 PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-----E 82 P++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I I E Sbjct: 1 PVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEE 60 Query: 83 VAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 V G +G F I +L + + + V++ + V N Sbjct: 61 VLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK------VRSWTN 114 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 +E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 115 LETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 163 >gi|312890387|ref|ZP_07749924.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603] gi|311297157|gb|EFQ74289.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603] Length = 165 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 94/167 (56%), Gaps = 8/167 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +F++I+ + LV+ +NP++SV LI F ++LL A+F+A++ +VY+GA++ Sbjct: 4 FYFVAFLSILFALLVIFSKNPVHSVLYLILTFFTFTIHYILLNAQFLAIVNFIVYMGAIM 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V ++ML E +EP K + IG LI A++F V S + Sbjct: 64 V-LFLFVLMLLNLNEDSEPVKTSMVKFAAIIGG-GCLLITLAASFKVVHPS---SVVALT 118 Query: 128 GNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 +N V+N+GKVL+ ++ P E+S +L +M+GA++L + + ++ Sbjct: 119 NDNLGLVKNLGKVLFNEFLLPFEVSSLLLFSAMVGAVLLATKDKSNV 165 >gi|197121682|ref|YP_002133633.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. K] gi|220916478|ref|YP_002491782.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter dehalogenans 2CP-1] gi|196171531|gb|ACG72504.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. K] gi|219954332|gb|ACL64716.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter dehalogenans 2CP-1] Length = 211 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 91/170 (53%), Gaps = 7/170 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FY+ + + + + V RN +YS F L+ A + A L++LL A+FVA+ L++Y Sbjct: 47 LPDVLFYVLAVLTVAGAAGVALSRNILYSTFGLLTALLGAGALYVLLSADFVAVTQLLIY 106 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G V+V LF +M+ + E+ G G F + + AA +++ + + A G + Sbjct: 107 IGGVLVLILFAVMLTNRITEINVSNTSFGLFGGFLLFVSAAPVLLAVALLTPWQA-GPAA 165 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 L + IG +++ P E++ +LL +++GAIV+ R++IK Sbjct: 166 PL---APTTQAIGDAFLSRWLLPFEVASLVLLSTLVGAIVI---ARKEIK 209 >gi|170077546|ref|YP_001734184.1| NADH dehydrogenase subunit J [Synechococcus sp. PCC 7002] gi|22651980|gb|AAN03535.1|AF381034_3 NADH dehydrogenase subunit G [Synechococcus sp. PCC 7002] gi|169885215|gb|ACA98928.1| NADH dehydrogenase subunit G [Synechococcus sp. PCC 7002] Length = 205 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 24/179 (13%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M + S+ VV N +YS F L F++ +G ++LL A+FVA +++Y Sbjct: 7 VQIVSFVILTVMMLGSALGVVLFENIVYSAFLLGGVFISISGFYILLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL---AAELIVCASNF-----MV 114 VGA+ V LF IM+++ KK F S G L A +VC F MV Sbjct: 67 VGAINVLILFAIMLVN---------KKEDF--SQMPGRLLRQGATALVCLGLFALLGTMV 115 Query: 115 FSAEGELSRL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 ELS + GN+V I K ++ + P E++ +LL++M+GAI+L RRDI Sbjct: 116 LVTPWELSTISPAAVGNSVVAIAKHFFSDFLLPFELASVLLLIAMVGAIIL---ARRDI 171 >gi|300770867|ref|ZP_07080744.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium spiritivorum ATCC 33861] gi|300762140|gb|EFK58959.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium spiritivorum ATCC 33861] Length = 182 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 12/181 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ L FY F+ +AI S+ LVV ++N ++F AGL+L A+FVA+ ++ Sbjct: 1 MTLEELLFYAFAALAIGSALLVVNLKNTARALFLFFIVLFAMAGLYLFALADFVAITQIM 60 Query: 61 VYVGAVIVFFLFIIMM----LDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCAS 110 VYVG V++ +F M+ L D++ A P + L S F+ I+ ++ S Sbjct: 61 VYVGGVLILMIFAFMLSNKELLKDLQHASGKFLTLPNWQSLILSSAFLIIMITAVVEWQS 120 Query: 111 NFMVFSAEGELSRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + ++ + NN++ +G TQY P E+ G L++++IGA L + Sbjct: 121 EVPAWIEQARINNTFIRPSDNNIQQLGFKFMTQYILPFELIGIFLMMTLIGAAHLSRKED 180 Query: 169 R 169 + Sbjct: 181 K 181 >gi|133900400|gb|ABO41366.1| NADH dehydrogenase subunit 6 [Bruguiera gymnorhiza] Length = 179 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 17/173 (9%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F N +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRNTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFFIG----ILAAELIVC-----ASNFMVFSAEGELSRLVF 126 I EV G +G F IL E I + +M ++ R Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTYMRYTVYAVKVR--- 119 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ Sbjct: 120 SWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQNIFRR 172 >gi|302864910|ref|YP_003833547.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Micromonospora aurantiaca ATCC 27029] gi|315501195|ref|YP_004080082.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. L5] gi|302567769|gb|ADL43971.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora aurantiaca ATCC 27029] gi|315407814|gb|ADU05931.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. L5] Length = 256 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 22/207 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++ + +A++ + +V RN ++S L+ + ++L F+ M+ ++VY Sbjct: 17 EEVTFWILAPLALLGAIGMVWARNAVHSALWLVLTMLCLGVFYVLQAGPFIGMVQIIVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILAAELIVCASNFMVFS- 116 GA+++ FLF++M++ D + RG LG F G++ L Sbjct: 77 GAIMMLFLFVLMLVGRDASDSLIETLRGQRVAAVVLGLGFAGLVGTGLYRALDGVQPVGL 136 Query: 117 --AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 A GE NV+ I ++L+T+Y + E++ +L+ + +GA+VL RR R Sbjct: 137 DEANGE--------GNVQGIARLLFTKYVFAFELTSALLITAAVGAMVLAHVERRKADRM 188 Query: 175 DISKQLES--NPDNSIVMVKVKSGKGI 199 D +++ P N K G G+ Sbjct: 189 DQIATMKARFRPGN---YPGPKPGPGV 212 >gi|126659018|ref|ZP_01730159.1| NADH dehydrogenase subunit J [Cyanothece sp. CCY0110] gi|126619675|gb|EAZ90403.1| NADH dehydrogenase subunit J [Cyanothece sp. CCY0110] Length = 208 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 16/174 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + II++ VV + N +YS F L F++ +G+++LL A+FVA +++Y Sbjct: 7 VQVISFAILAALVIIAALGVVLLENIVYSAFLLGGVFISISGIYILLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 VGAV V LF IM+++ + + R + +LA +++ +S Sbjct: 67 VGAVNVLILFAIMLVNKKQDYSNLPGRWLKRSATALVCGGLFALLATMVLITP-----WS 121 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 E L+ N V IGK ++ + P E++ +LL++M+GAIVL RRD Sbjct: 122 LETNAPGLI--ENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVL---ARRD 170 >gi|254779812|ref|YP_003057918.1| NADH dehydrogenase subunit J [Helicobacter pylori B38] gi|254001724|emb|CAX29955.1| NADH-ubiquinone oxidoreductase, NQO10 subunit [Helicobacter pylori B38] Length = 182 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 8/179 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYV Sbjct: 3 ETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGEL 121 GAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 63 GAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVNS 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 + + + N++ IG VL+T Y P E + +LL++M+G I ++ H IK Sbjct: 123 NAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTHFIKES 181 >gi|317130738|ref|YP_004097020.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus cellulosilyticus DSM 2522] gi|315475686|gb|ADU32289.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus cellulosilyticus DSM 2522] Length = 164 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 11/166 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + F + + +AI S LV+ +R + V S+ F F AGL+ LLGA+F+ +I ++ Sbjct: 1 MNTQMIIFLILAILAIACSVLVLQLRRISHRVVSMAFVFFAIAGLYFLLGADFIGIIQII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEV--AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 VY GAV + F+F +MM + A PR+ L FIG+ A L+ FM++ Sbjct: 61 VYAGAVTILFIFGMMMTEHRNVTFSAHPRRAHRVLS--FIGV--ATLL----GFMLYGIL 112 Query: 119 G-ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G +L E IG LY Y GF+L ++IGAIV+ Sbjct: 113 GLDLPASEPYEGTAEAIGLELYGHYVVAFLAMGFLLTAALIGAIVI 158 >gi|229007601|ref|ZP_04165196.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides Rock1-4] gi|228753739|gb|EEM03182.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides Rock1-4] Length = 146 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 4/147 (2%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 ++ + +L+F F++ AGL+ LL AEFV + +++Y GA+ + +F IM+ D E Sbjct: 1 MHMMLALVFTFLSIAGLYFLLLAEFVGVAQILIYSGAITIIMIFGIMLTKHDAENESSFS 60 Query: 89 KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 R +L FF ++ ++ A N + F+ + N IG +LY++Y P E+ Sbjct: 61 FRKWL-IFFAVVVFGGVMYFAVNNIDFTNRSVQGSVPLHEQNTLQIGTLLYSKYVIPFEL 119 Query: 149 SGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ILL++++GAIVL ++D K D Sbjct: 120 TSVILLVALVGAIVLA---KKDEKEGD 143 >gi|271962164|ref|YP_003336360.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein [Streptosporangium roseum DSM 43021] gi|270505339|gb|ACZ83617.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein [Streptosporangium roseum DSM 43021] Length = 270 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 103/188 (54%), Gaps = 4/188 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +++ ++ +V R +YS L ++ A L+ + A F+A + ++VY Sbjct: 3 ETITFWVLAVVSVSAALGLVFSRKAVYSALMLGVVMLSLAVLYAVQDAPFLAAVQIIVYT 62 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV++ FLF++M++ +D + E K + F + AA L + A N + A+G Sbjct: 63 GAVMMLFLFVLMLVGVDSADSLVETIKGQRFWATIAGLGFAALLALGAGNMVFAPAKGVG 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK--RQDISKQ 179 + G NV + ++++T++ + E++ +L+ + +GA+VL R R K ++D+++ Sbjct: 123 GAVQEAGGNVPALAQLIFTRHVFAFEVTSALLITAALGAMVLAHRERVRPKATQRDLARA 182 Query: 180 LESNPDNS 187 + P S Sbjct: 183 RFTGPQPS 190 >gi|271501260|ref|YP_003334285.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech586] gi|270344815|gb|ACZ77580.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech586] Length = 183 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 98/181 (54%), Gaps = 9/181 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY GA++ Sbjct: 5 FYATAIIAVLATLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F++MML++ V E ++K + +IG A LI+ A ++ ++ Sbjct: 65 VLFVFVVMMLNLGNSVDE-QEKLWLKPAVWIGPGALSLILLA---VIVKGITSITDQNIV 120 Query: 128 GN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DI--KRQDISKQLES 182 GN + + +G L+ Y +E++ +LL ++ A + +R D+ K QD K++ Sbjct: 121 GNMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGDLVAKDQDADKKITE 180 Query: 183 N 183 Sbjct: 181 E 181 >gi|254382433|ref|ZP_04997792.1| NADH dehydrogenase subunit J [Streptomyces sp. Mg1] gi|194341337|gb|EDX22303.1| NADH dehydrogenase subunit J [Streptomyces sp. Mg1] Length = 270 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 95/181 (52%), Gaps = 10/181 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + + ++ ++S SL + A +L GA F+ ++ ++VY Sbjct: 15 EAVQFWVLGTVAVIGALSTILMKKAVHSALSLAGTMIILAVFYLANGAYFLGVVQVIVYT 74 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA----ELIVCASNFMVFSAEG 119 GA+++ FLF++M++ + A K G ++ +L A L++ + Sbjct: 75 GAIMMLFLFVVMLVGV---TAADSLKETLKGQRWMAVLCALGFGTLLIAGIAHARLNHFN 131 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L R + G +VE + +++T+Y + EI+G +L+ + +GA+VL HR +R ++ Sbjct: 132 GLGR-INSGGHVEGLATLIFTKYVFAFEITGALLITAAVGAMVLT--HRERTERAATQRE 188 Query: 180 L 180 L Sbjct: 189 L 189 >gi|87301842|ref|ZP_01084676.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 5701] gi|87283410|gb|EAQ75365.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 5701] Length = 208 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 13/179 (7%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V Q + F S ++ S VV + N +YS F L F++ AGL+LLL A FVA ++V Sbjct: 6 VTQLVCFIALSLTLVLGSLGVVLLPNIVYSAFLLAGVFLSVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFL--GSFFIGILAAELIVCASNFMVFSAE 118 YVGAV V LF IM+++ +AE P L G+ +G+ L V + Sbjct: 66 YVGAVNVLILFAIMLVNKKEAMAEIPGLLLRRLLSGAVCLGLFLLILRVDLTTPWAVPGP 125 Query: 119 GELSRLVFKGNNVEN-IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 L G++ IG L++ Y P E++ +LL++MIGAIVL RRD+ D+ Sbjct: 126 TPL------GDDATVLIGIHLFSDYLLPFELASVLLLMAMIGAIVL---ARRDVFSSDV 175 >gi|148657104|ref|YP_001277309.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus sp. RS-1] gi|148569214|gb|ABQ91359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus sp. RS-1] Length = 215 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 12/176 (6%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F +F+ ++++ + VTV+N +++ LI +F L+LL+ AEF+ + +++YVG Sbjct: 6 TILFLVFAVFILVAAIMTVTVKNIVHAALWLISSFFGVGALYLLMEAEFLGVAQVLIYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 AV + LF IM L D+E ++ R+ R ++ L LIV V + +L Sbjct: 66 AVSILILFAIM-LTRDLEGSQNRQLTPRWWIALLVPAALFGLLIVPT----VMTHAWQLP 120 Query: 123 RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 G + + IG +Y P E++ +LL++MIGAIV+ R +R Sbjct: 121 PPPPAGQPPSISGAQQIGTAFMREYLLPFEVAAILLLVAMIGAIVVAFEEREQRRR 176 >gi|315453244|ref|YP_004073514.1| NADH dehydrogenase I chain J [Helicobacter felis ATCC 49179] gi|315132296|emb|CBY82924.1| NADH dehydrogenase I chain J [Helicobacter felis ATCC 49179] Length = 174 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 96/175 (54%), Gaps = 6/175 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++L FY F+ + + +F+VVT N +Y++ SL A V + F LL AEF+ ++ ++VYV Sbjct: 3 ETLAFYFFAALTLGMAFVVVTTTNILYAMTSLATAMVFVSAFFFLLDAEFLGVVQILVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM---VFSAEGE 120 GAV+V + F +M L+ EV E + + + + + F+ ++ + Sbjct: 63 GAVVVMYAFGMMFLNASQEVQERAHAPKIPALLVMVLAVVLVALLGAPFIAQYAYTLQES 122 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 LS V +N + IG VL+++Y E+ F+LL++++GAI L ++ K++ Sbjct: 123 LSPSV-DISNTKLIGYVLFSKYLVAFEVGAFMLLVALVGAIASAL--KKSPKKES 174 >gi|158335316|ref|YP_001516488.1| NADH dehydrogenase subunit J [Acaryochloris marina MBIC11017] gi|158305557|gb|ABW27174.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain J, putative [Acaryochloris marina MBIC11017] Length = 198 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 16/165 (9%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L S M + ++ VV + +YS F+L F++ AGL++LL A+FV+ +++YVGAV V Sbjct: 14 LLSVMMLGAALGVVLFESIVYSAFTLGAVFISIAGLYILLNADFVSAAQILIYVGAVNVL 73 Query: 70 FLFIIMMLDIDIEVAEPRKKR-------GFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 LF IM+++ E +P +R F+ +LA +V +N+ V A Sbjct: 74 ILFAIMLVN-KTEDFKPLPRRWIRKVSTAFVSLALFTLLAT--MVLQTNWPVDVA----- 125 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 L ++VE IG +T Y P E++ +LL++++GA+VL R Sbjct: 126 -LAPPASSVETIGIHFFTDYLLPFELASILLLMALVGAVVLARRE 169 >gi|332708450|ref|ZP_08428426.1| NADH dehydrogenase subunit J [Lyngbya majuscula 3L] gi|332352781|gb|EGJ32345.1| NADH dehydrogenase subunit J [Lyngbya majuscula 3L] Length = 208 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 15/178 (8%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S + I ++ VV + N +YS F L F+ +GL++LL A+FVA +++YVGAV V Sbjct: 14 ILSVIMIGAALGVVLLSNIVYSAFLLAGVFIGISGLYILLNADFVAAAQILIYVGAVNVL 73 Query: 70 FLFIIMMLDIDIEVAEPRKKR----GFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 LF IM+++ E +P KR G IG+ A +V A+ + V E+ Sbjct: 74 ILFAIMLVN-KREDFQPMTKRWVRTGSTAIVCIGLFALLSTMVLATPWSV-----EIDPA 127 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD-IKRQDISKQLE 181 + N IG+ ++ + P E++ +LL++M+GAI++ RRD I + +S+ E Sbjct: 128 MVVTNTAVEIGQHFFSDFLLPFELASVLLLMAMVGAIII---ARRDYIPEELVSRDQE 182 >gi|581746|emb|CAA44376.1| NDHG [Synechocystis sp. PCC 6803] Length = 202 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 24/193 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + +F+ I ++ VV + N +YS F L F++ +G+++LL A+FVA ++VY Sbjct: 7 VQYISFLILAFLVIGAALGVVLLSNIVYSAFLLGGVFLSISGIYILLNADFVAAAQVLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNF-----MV 114 VGAV V LF IM+++ K+ F G + + A +VC F MV Sbjct: 67 VGAVSVLILFAIMLVN---------KREDFSKIPGRWLRNVSTA--LVCTGIFALLSTMV 115 Query: 115 FSAEGELSRL-VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 +++ F N + IGK ++ Y P E++ +LL++M+GAI+L R + Sbjct: 116 LITPWQINETGPFVENTLVTIGKHFFSDYLLPFELASVLLLMAMVGAIILA---RPGLNS 172 Query: 174 QDI-SKQLESNPD 185 + + KQ PD Sbjct: 173 RIVRGKQNRHGPD 185 >gi|194336916|ref|YP_002018710.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pelodictyon phaeoclathratiforme BU-1] gi|194309393|gb|ACF44093.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pelodictyon phaeoclathratiforme BU-1] Length = 170 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 5/145 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FYLF+ + + S+ VV RN IYS FSL+F F A L++ L A+F+A+ +VVYVG Sbjct: 7 TVIFYLFAAITLFSAAFVVFTRNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SR 123 ++V LF +M + + V + + + G L IV + ++ G + S Sbjct: 67 GILVLLLFGVMFTNSIMHVGQKSEVLHIIP----GTLLLAAIVGGLLYTFYTTHGWMPSE 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEI 148 + +G+ VE IG ++Y P E+ Sbjct: 123 TMLQGSIVERIGFETMSRYVLPFEM 147 >gi|227494512|ref|ZP_03924828.1| NADH dehydrogenase subunit J [Actinomyces coleocanis DSM 15436] gi|226832246|gb|EEH64629.1| NADH dehydrogenase subunit J [Actinomyces coleocanis DSM 15436] Length = 321 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 96/181 (53%), Gaps = 9/181 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LFF++ + M I + V+ ++ Y+ S++ V A L+LL GA F+ ++ +VVY GA Sbjct: 20 LFFFVATAM-IAGALGVLFLKKAAYAAISMVVVMVGLAVLYLLHGAPFMGIVQIVVYTGA 78 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL- 124 +++ FLF++MM+ ++ + R ++ LA L+ + ++A GE Sbjct: 79 IMMLFLFVLMMIGLNASDEYQSQNRTYI--TMAVTLATVLLAGFGITVAYTAMGETQEFK 136 Query: 125 --VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISKQ 179 F VE + K L+ Y + +E++G +L++++IGA++L R R +R + + Sbjct: 137 VDAFSDAPVEELAKTLFANYWFSMELAGTLLIVAVIGAVLLTNGDRLTKRHTQRSVVEAK 196 Query: 180 L 180 + Sbjct: 197 M 197 >gi|37526969|ref|NP_930313.1| NADH dehydrogenase subunit J [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786402|emb|CAE15455.1| NADH dehydrogenase I chain J (NADH-ubiquinone oxidoreductase chain J) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 181 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 92/167 (55%), Gaps = 8/167 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +AI+++ V+T NPI+++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYTAGLIAILATIRVITHTNPIHALLYLIVSLLALSAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPR----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122 V F+F++MML++ V E K R ++G GIL+ L+V ++ + G+++ Sbjct: 65 VLFVFVVMMLNLGKSVVEQERVWLKPRTWIGP---GILSTMLLVVLVYTIINVSHGDIAD 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + + +G L+ Y +E++ +LL M+ A + H++ Sbjct: 122 NITGEVVSAKEVGISLFGPYVLAVELASLLLLAGMVVAYHIGREHKQ 168 >gi|291618181|ref|YP_003520923.1| NuoJ [Pantoea ananatis LMG 20103] gi|291153211|gb|ADD77795.1| NuoJ [Pantoea ananatis LMG 20103] Length = 204 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 93/163 (57%), Gaps = 4/163 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + ++ AG+F LGA F + ++VY GA++ Sbjct: 26 FYLCGLVAVVTTLRVITHTNPVHALLYLIVSLLSVAGVFFSLGAYFAGALEIIVYAGAIM 85 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126 V F+F++MML++ + E +++ S +IG L + L++ + + +A+ + + Sbjct: 86 VLFVFVVMMLNLG-KATEKQEREWLSPSLWIGPGLVSFLLLAVMIYAIMTAQDQ--GIDG 142 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 K + + +G L+ Y +E++ +LL ++ A L R+ Sbjct: 143 KIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHLGREERQ 185 >gi|257852684|gb|ACV71354.1| NADH dehydrogenase subunit 6 [Cassipourea lanceolata] Length = 178 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 11/170 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRDTSGLLLFLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV--FSAEGELSRL---VFKG-----N 129 I R S IG IL E+ N + + + L V+ G Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 123 NLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRR 172 >gi|195953135|ref|YP_002121425.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobaculum sp. Y04AAS1] gi|195932747|gb|ACG57447.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobaculum sp. Y04AAS1] Length = 173 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 5/175 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FYLF ++II VV+ NPIY V L+ A + +G+F GAE + + L+VY Sbjct: 2 LNQIAFYLFGGISIICGLGVVSASNPIYVVLWLLGALIAISGIFFSAGAELLGALQLMVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120 V A+ VF++ II + + R G FI +L E + + + + Sbjct: 62 VVAIAVFYILIITAVPWRKLHKNEQHNRLIGVTVLPFIALLYVEAFIVGISGVSITKNKI 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N E IG L++ Y + E+ +LL+SMIGAI+L R++ K D Sbjct: 122 IETITKNYGNAEVIGIKLFSTYFWAFELMSVLLLISMIGAILL---GRKEEKTYD 173 >gi|237752483|ref|ZP_04582963.1| NADH oxidoreductase I [Helicobacter winghamensis ATCC BAA-430] gi|229375972|gb|EEO26063.1| NADH oxidoreductase I [Helicobacter winghamensis ATCC BAA-430] Length = 184 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 12/167 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY+F + + +VVT +N +Y++ +L + + F LLGAEF+ ++ +VVY Sbjct: 3 EAIAFYVFCALTLAMFLVVVTTQNILYALSALAAGMMFVSAFFFLLGAEFLGVVQIVVYT 62 Query: 64 GAVIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIVC----ASNFMVFS 116 GAVI + F +M D ++ E + K FL +G L LIV A N Sbjct: 63 GAVIALYAFAMMFFDAQKLENEKVQSPKMLFFLSG--MGALLLVLIVVAPVIAENLASLQ 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 A + + NV+ +G VL+T++ P EI+ +LL++MI IVL Sbjct: 121 ATTPIKEEI---GNVQMVGYVLFTKFLIPFEIAAVMLLVAMIAGIVL 164 >gi|297585411|ref|YP_003701191.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus selenitireducens MLS10] gi|297143868|gb|ADI00626.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus selenitireducens MLS10] Length = 165 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 13/174 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q +FF + + +AI + +++ + + V S+ F+F AGL+ LLGAEF+ +I ++ Sbjct: 1 MTAQMIFFTILALIAITGAVMMMLLTTISHRVVSMWFSFFAVAGLYFLLGAEFIGIIQIM 60 Query: 61 VYVGAVIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSF-FIGILAAELIVCASNFMVFS 116 VYVGA+ + F+F +MM D + E +PR +G+ +G+L L S + + Sbjct: 61 VYVGAITILFVFGMMMTDHKTVSFE-KDPRTAHNVIGTISAVGVLGILLYGIFSMDLPGN 119 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 A+ E++ V IG LY Y F+L ++IGAIV+ R D Sbjct: 120 AQPEVT-------TVHAIGMDLYGHYFVAFIAVAFLLTAALIGAIVIA-RKEAD 165 >gi|327394574|dbj|BAK11996.1| NADH-quinone oxidoreductase chain J NuoJ [Pantoea ananatis AJ13355] Length = 200 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 93/163 (57%), Gaps = 4/163 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + ++ AG+F LGA F + ++VY GA++ Sbjct: 22 FYLCGLVAVVTTLRVITHTNPVHALLYLIVSLLSVAGVFFSLGAYFAGALEIIVYAGAIM 81 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126 V F+F++MML++ + E +++ S +IG L + L++ + + +A+ + + Sbjct: 82 VLFVFVVMMLNLG-KATEKQEREWLSPSLWIGPGLVSFLLLAVMIYAIMTAQDQ--GIDG 138 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 K + + +G L+ Y +E++ +LL ++ A L R+ Sbjct: 139 KIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHLGREERQ 181 >gi|133900498|gb|ABO41415.1| NADH dehydrogenase subunit 6 [Marathrum cf. oxycarpum Cachoeirc 9/1996] Length = 179 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFFILVFCDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILEFESIPLLPTQKQTAYLKYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y L +S ILL++MIGAIVL + + +KRQD+ ++ Sbjct: 118 -VRPWTNLETLGNLLYTYYFLWLLLSSLILLVAMIGAIVLTMHRTKKVKRQDLFRR 172 >gi|209427647|ref|YP_002274321.1| NADH dehydrogenase subunit 6 [Blastocladiella emersonii] gi|82492275|gb|ABB78014.1| NADH dehydrogenase subunit 6 [Blastocladiella emersonii] Length = 201 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 9/141 (6%) Query: 8 FYLFSFMAIISSFLVVTV-RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYL S + I+S L + + +NPI SV L+ FVN A +F+LLG + I ++VYVGA+ Sbjct: 8 FYLLSVLTILSGVLTIVMGKNPINSVVYLVSCFVNCALIFILLGVNLLGFIYIIVYVGAI 67 Query: 67 IVFFLFIIMMLDIDIEVAEPR---KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + F+F+IMM+D+ +E +GFL + LI+ S ++ E LS Sbjct: 68 AILFIFVIMMMDLRNLTSEKEMSSNSKGFLSLSY----PLALIIAISTLLLMMKENNLSV 123 Query: 124 LVFKGNNV-ENIGKVLYTQYA 143 ++ ++ +IGK++ + Sbjct: 124 ILQITTDLGSSIGKIVVNDFT 144 >gi|133900530|gb|ABO41431.1| NADH dehydrogenase subunit 6 [Podostemum ceratophyllum] Length = 179 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 23/176 (13%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFFILVFCDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + V++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILEFESIPLLPTQKQTAYLKYTVYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E +G +LYT Y + L +S ILL++MIGAIVL + +KRQD+ ++ Sbjct: 118 -VRPWTNLETLGNLLYTYYFFWLLLSSLILLVAMIGAIVLTMHRTTKVKRQDLFRR 172 >gi|93005411|ref|YP_579848.1| NADH dehydrogenase (quinone) [Psychrobacter cryohalolentis K5] gi|92393089|gb|ABE74364.1| NADH dehydrogenase (quinone) [Psychrobacter cryohalolentis K5] Length = 247 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 76/135 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +AI +S VVT NP++++ S+I + + AG+F ++GA F + +VVY GA++ Sbjct: 13 FYSLAAVAIFASLRVVTQANPVHAILSMIVSLLAIAGIFFVIGAPFAGALEIVVYAGAIM 72 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E ++ G++ I +I M+ E + + Sbjct: 73 VLFVFVIMMLNLGMRNDEREERWLDAGTWAIPTGLTIIIAVVLYAMIGLNHNEAALIGGT 132 Query: 128 GNNVENIGKVLYTQY 142 + + +G VL+T+Y Sbjct: 133 TISAKAVGTVLFTKY 147 >gi|303248407|ref|ZP_07334667.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio fructosovorans JJ] gi|302490205|gb|EFL50123.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio fructosovorans JJ] Length = 173 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 54/90 (60%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FYL S + +I++ L T RNP+++V + F+ AGLF++LGA ++ +V Sbjct: 1 MTALGALFYLLSAVLLIAAGLAATRRNPVHAVCCAVVTFIATAGLFVVLGAPLPGVLEVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 VY GA++V FLFIIM+L + + V R Sbjct: 61 VYAGAIMVLFLFIIMLLGLPVGVGAVPAAR 90 >gi|322378674|ref|ZP_08053107.1| NADH dehydrogenase subunit J [Helicobacter suis HS1] gi|321148891|gb|EFX43358.1| NADH dehydrogenase subunit J [Helicobacter suis HS1] Length = 181 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F+ + + +VV+ N +Y++ +L + V +G F LLGAEF+ ++ ++VYVGAVI Sbjct: 7 FYFFAIFTLSMALIVVSTSNILYAMSALAASMVFISGFFFLLGAEFLGVVQILVYVGAVI 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 V + F +M + EV E K LG F +L L A N E ++ Sbjct: 67 VMYAFGMMFFNASEEVIERSHKPWLVYILGGVFALLLVVILGAPALNNYAHHLSAENLQI 126 Query: 125 V---FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 V NV +G ++T+Y E G +LL ++IG I LR ++++ Sbjct: 127 VTPNLSTTNVHLMGYFVFTKYRIAFEAGGVMLLSALIGGITTALRKSYLSQKEN 180 >gi|8954362|ref|NP_059351.1| NADH dehydrogenase subunit 6 [Cyanidioschyzon merolae] gi|3927866|dbj|BAA34654.1| NADH-ubiquinone oxidoreductase chain 6 [Cyanidioschyzon merolae strain 10D] Length = 204 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 100/181 (55%), Gaps = 18/181 (9%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84 ++N ++S+ L+ F+NAA L ++L EF+A++ L+VYVGA+ V FLF+I++L +++++ Sbjct: 25 LKNSVFSILFLVLIFLNAAALIMMLETEFLAILFLIVYVGAIAVLFLFVIIIL--NVKLS 82 Query: 85 EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL-------------VFKGNNV 131 E +G + + +I F++ E L V+ +N+ Sbjct: 83 EFYYS---IGQYILIGSILGIIFLVQTFLILDTNIEFHFLDNIHNLYPEWNFEVYSQSNI 139 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMV 191 E +G LYT Y Y ++ ILL+++IGAIVL + R +KRQ+I Q+ + +S+ + Sbjct: 140 EALGSNLYTNYMYVFILAAIILLIAIIGAIVLTIHQRGYVKRQNILNQVSRDFKDSVYYI 199 Query: 192 K 192 Sbjct: 200 N 200 >gi|298246360|ref|ZP_06970166.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter racemifer DSM 44963] gi|297553841|gb|EFH87706.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter racemifer DSM 44963] Length = 174 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 13/155 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+ +N +YS SLI A +L LGA F+A++ +++Y GA++V FLF++ ML D Sbjct: 22 VIAFKNAVYSALSLILTLFFLAMFYLQLGAMFIAVVQVLIYAGAIMVLFLFVVTMLTSD- 80 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----------SAEGELSRLVFKGNNV 131 A+ + + ++G L ++V A ++++F A S V NV Sbjct: 81 --AQDKGEDRIPWQRYVGSLLGVVLVGALSYLIFKNVSGSPTVLKAGESYSHAVATHGNV 138 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 E G L+ Y +P E++ +++++++GA+V R Sbjct: 139 EAFGLALFHGYLFPFEVTSLLIVVAILGALVFGRR 173 >gi|229158854|ref|ZP_04286912.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC 4342] gi|228624838|gb|EEK81607.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC 4342] Length = 162 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 4/161 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTKHNAGNESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G +LY++Y P E+ ILL++++GAI+L ++D K +D Sbjct: 122 GTLLYSKYIIPFELISVILLVALVGAIILA---KKDEKEED 159 >gi|33866802|ref|NP_898361.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 8102] gi|33639403|emb|CAE08787.1| NADH dehydrogenase I chain 6 (or J) [Synechococcus sp. WH 8102] Length = 200 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 23/178 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + S + + + VV + N +YS F L F+ AGL+LLL A FVA ++VYVGA+ Sbjct: 12 FLVLSAVVVTGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLVYVGAIN 71 Query: 68 VFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 V LF IM+++ D++ +A +R G VC + + Sbjct: 72 VLILFAIMLVNKREDLKAIAGLNVRRAVSGG-----------VCLGLLALLVRVVLTTPW 120 Query: 125 VFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G IG+ L+T Y P E++ +LL++MIGAIVL RRD+ D+ Sbjct: 121 SLPGPAAVGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVL---ARRDVLATDV 175 >gi|257852586|gb|ACV71305.1| NADH dehydrogenase subunit 6 [Endodesmia calophylloides] Length = 180 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 27/179 (15%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 I-----EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSR 123 I EV G +G F I +L + + +++ + Sbjct: 63 IAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGK----- 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 V N+E +G +LYT Y + ILL++MIGAIVL + HR +KRQDI ++ Sbjct: 118 -VRSWTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTM-HRTTHGAVKRQDIFRR 174 >gi|297201631|ref|ZP_06919028.1| NADH dehydrogenase subunit J [Streptomyces sviceus ATCC 29083] gi|197710997|gb|EDY55031.1| NADH dehydrogenase subunit J [Streptomyces sviceus ATCC 29083] Length = 285 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 97/187 (51%), Gaps = 20/187 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ +A+I + V +R ++S L + A +L GA F+ ++ +VVY Sbjct: 21 EAFQFWVLGTVAVIGALCTVFMRKAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVVYT 80 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121 GA+++ FLF++M++ + A G ++ +L C F ++F+ G Sbjct: 81 GAIMMLFLFVVMLVGV---TAADSLTETIKGQRWLALL------CGLGFGILLFAGIGNA 131 Query: 122 SRLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIK 172 S F G NVE + +++T+Y + EI+G +L+ + +GA+VL R R R + Sbjct: 132 SLKQFNGLTQANAGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALT 191 Query: 173 RQDISKQ 179 +++++++ Sbjct: 192 QREMAER 198 >gi|81300154|ref|YP_400362.1| NADH dehydrogenase subunit J [Synechococcus elongatus PCC 7942] gi|81169035|gb|ABB57375.1| NADH dehydrogenase subunit 6 [Synechococcus elongatus PCC 7942] Length = 201 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 19/204 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + ++++ VV N +YS F L F++ AGL+LLL A FVA +++Y Sbjct: 7 VQLVTFIILTAGVVLAALGVVLSSNIVYSAFLLGGVFISIAGLYLLLNASFVAFAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK----KRGFLGSFFIGILA-AELIVCASNFMVFSA 117 VGAV V LF IM+++ E P K ++G G+ A L V ++ + V Sbjct: 67 VGAVNVLILFAIMLVN-KREDFRPLKFNWLRKGLTVLVCGGLFALLSLTVISTPWAVTPT 125 Query: 118 EGELSRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G G+ + IG+ ++ Y P E++ +LL++MIGAIVL RRD + +D+ Sbjct: 126 PGA------SGDEAIYLIGEHFFSDYLLPFELASVLLLMAMIGAIVL---ARRDFEPEDL 176 Query: 177 SKQLESN---PDNSIVMVKVKSGK 197 ++ P+ S + +GK Sbjct: 177 ITGAAADLQLPERSREELLTGAGK 200 >gi|326329619|ref|ZP_08195941.1| NADH dehydrogenase I, J subunit [Nocardioidaceae bacterium Broad-1] gi|325952615|gb|EGD44633.1| NADH dehydrogenase I, J subunit [Nocardioidaceae bacterium Broad-1] Length = 238 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 10/192 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + + +I++ ++ R P+++ SL V A ++ L A F+ + +VVY GA++ Sbjct: 3 FVILASVTVIAALGLLFARKPVHAALSLAVVMVGLAMIYATLEAPFLFAVQIVVYTGAIL 62 Query: 68 VFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + FLF+IM++ +D + E + L + L A LI + + G S Sbjct: 63 MLFLFVIMLVGVDTSDTLKETIAGQKVLAALLGIGLGATLIAGVGQASIATMRGLSS--A 120 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 +G NV+ + +L+++Y E + +L+ + IGA+VL R R D KQ +S+ Sbjct: 121 NEGGNVQRLADLLFSRYVIAFEATSALLITAAIGAMVLAHRERID------PKQSQSDLA 174 Query: 186 NSIVMVKVKSGK 197 V KSGK Sbjct: 175 RKRVADYAKSGK 186 >gi|312139317|ref|YP_004006653.1| NADH dehydrogenase (quinone) chain j nuoj [Rhodococcus equi 103S] gi|325676674|ref|ZP_08156349.1| NADH-quinone oxidoreductase subunit J [Rhodococcus equi ATCC 33707] gi|311888656|emb|CBH47968.1| NADH dehydrogenase (quinone) chain J NuoJ [Rhodococcus equi 103S] gi|325552529|gb|EGD22216.1| NADH-quinone oxidoreductase subunit J [Rhodococcus equi ATCC 33707] Length = 276 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 99/187 (52%), Gaps = 11/187 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ A++ + VV +YS L + A L++ GA F+ ++ +VVY Sbjct: 24 EAVQFWILGTAAVLGALGVVCAPKAVYSAICLAMTMIVLAVLYIAQGALFLGVVQVVVYT 83 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GAV++ FLF++M++ +D +E ++ + G+L + A+ ++ S E Sbjct: 84 GAVMMLFLFVLMLIGVDSSDSLVETLRGQRIAAVVAGLGFGLLLIGGLGNATVGVLRSGE 143 Query: 119 ----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIK 172 G G NVE I ++++ +Y + E++G +L+ + IGA+VL R R R + Sbjct: 144 VGFVGLDQANSASGGNVEGIAELVFIRYVWVFEMTGALLITATIGAMVLAHRERFERRLG 203 Query: 173 RQDISKQ 179 ++++SKQ Sbjct: 204 QREMSKQ 210 >gi|113475269|ref|YP_721330.1| NADH dehydrogenase subunit J [Trichodesmium erythraeum IMS101] gi|110166317|gb|ABG50857.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Trichodesmium erythraeum IMS101] Length = 207 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 96/184 (52%), Gaps = 18/184 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + M I ++ VV N ++S F L F++ +GL+LLL A+FVA +++YVGAV Sbjct: 12 FVILAVMMIAAALGVVLFSNIVHSAFLLGGVFMSISGLYLLLNADFVATAQVLIYVGAVN 71 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSAEGELS 122 V LF IM+++ + + ++F + A +VC F MV S+ + Sbjct: 72 VLILFAIMLVN------KREDFKALPNAWFRKV--ATGLVCFGLFALLSTMVLSSSWSIP 123 Query: 123 RL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + +++ IGK +T + P E++ LL++M+GAI+L RRDI ++ + Sbjct: 124 VVGNATRESSIVLIGKHFFTDFLLPFELASVCLLIAMVGAIIL---ARRDILPDEVPTNV 180 Query: 181 ESNP 184 P Sbjct: 181 SQTP 184 >gi|71065159|ref|YP_263886.1| NADH dehydrogenase I, J subunit [Psychrobacter arcticus 273-4] gi|71038144|gb|AAZ18452.1| probable NADH dehydrogenase I, J subunit [Psychrobacter arcticus 273-4] Length = 239 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 76/135 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +AI +S VVT NP++++ S+I + + AG+F ++GA F + +VVY GA++ Sbjct: 13 FYSLAAVAIFASLRVVTQANPVHAILSMIVSLLAIAGIFFVIGAPFAGALEIVVYAGAIM 72 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E ++ G++ I +I M+ E + + Sbjct: 73 VLFVFVIMMLNLGMRNDEREERWLDAGTWAIPTGLTIIIAVVLYAMIGLNHNEAAVIGGS 132 Query: 128 GNNVENIGKVLYTQY 142 + + +G VL+T+Y Sbjct: 133 TISAKAVGTVLFTKY 147 >gi|322506936|gb|ADX02390.1| nuoJ [Acinetobacter baumannii 1656-2] gi|323516803|gb|ADX91184.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter baumannii TCDC-AB0715] Length = 163 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 53/76 (69%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 MAI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++V F+F+ Sbjct: 1 MAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIMVLFVFV 60 Query: 74 IMMLDIDIEVAEPRKK 89 +MML++ E +K Sbjct: 61 VMMLNLGQHTVEQERK 76 >gi|253989008|ref|YP_003040364.1| NADH dehydrogenase subunit J [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780458|emb|CAQ83620.1| nadh dehydrogenase i chain j (nadh-ubiquinone oxidoreductase chain j) [Photorhabdus asymbiotica] Length = 181 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 92/167 (55%), Gaps = 8/167 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +AI+++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYTAGLVAILATIRVITHTNPVHALLYLIVSLLALSAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPR----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122 V F+F++MML++ V E K R ++G GIL+A L+V ++ + G ++ Sbjct: 65 VLFVFVVMMLNLGKSVVEQERVWLKPRTWIGP---GILSAVLLVILVYTIINVSHGNIAD 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + + +G L+ Y +E++ +LL M+ A + H++ Sbjct: 122 NITGEVISAKEVGISLFGPYVLAVELASLLLLAGMVVAYHIGREHKQ 168 >gi|326799009|ref|YP_004316828.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobacterium sp. 21] gi|326549773|gb|ADZ78158.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobacterium sp. 21] Length = 165 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 101/173 (58%), Gaps = 20/173 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +F++I S +V+ +NP++SV L+ F ++LL A+F+A++ +VY+GA++ Sbjct: 4 FYFVAFLSIFFSLMVIITKNPVHSVLYLVITFFTFTVHYILLNAQFLAVVNFIVYMGAIM 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL------ 121 V FLF++M+L+++ + EP K S + ++ A +C ++ + G + Sbjct: 64 VLFLFVLMLLNLNKD-TEPMK------SVLVKVMGAVAGMC----LLVTVAGSIRAIEVS 112 Query: 122 SRLVFKGNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 L+ K + V N+GKVL+ ++ P EIS +LL +M+GA++L + ++ I Sbjct: 113 DPLILKSPDIGLVGNLGKVLFNEFLLPFEISSLLLLTAMVGAVLLAKKEQKSI 165 >gi|260598697|ref|YP_003211268.1| NADH:ubiquinone oxidoreductase subunit J [Cronobacter turicensis z3032] gi|260217874|emb|CBA32418.1| NADH-quinone oxidoreductase subunit J [Cronobacter turicensis z3032] Length = 187 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 104/185 (56%), Gaps = 16/185 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY GA++ Sbjct: 5 FYICALVAVLTTARVITHSNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFI--GILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ V R++R +L +I GIL+A L+V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLGDSVV--RQEREWLKPQIWIGPGILSAVLLVV----IVYAILG-VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 +GN + + +G L+ Y +E++ +LL ++ A L R+ K D+ Sbjct: 118 GIEGNPISAKAVGTDLFKTYVLAVELASMLLLAGLVVAFHL----GREEKAGDVVSVRGG 173 Query: 183 NPDNS 187 P ++ Sbjct: 174 APSDA 178 >gi|254480852|ref|ZP_05094098.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily protein [marine gamma proteobacterium HTCC2148] gi|214038647|gb|EEB79308.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily protein [marine gamma proteobacterium HTCC2148] Length = 169 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 14/176 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+ + +A+ S+ +T N +++ LI + + A +F L+GA F A + +V+Y Sbjct: 1 MLATLFYIAALIALTSTMAALTRANAAHALIYLIVSLLAVAVMFFLMGAPFAAALEVVIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS--FFIGILAAELIVCASNFMVFSAEGE 120 GA++V F+F+IMML++ + E R++ G F G +AA L++ MV G+ Sbjct: 61 AGAIMVLFVFVIMMLNLG-DTGEDREREWLAGRNWFVPGAMAALLLI--EMLMVL---GD 114 Query: 121 LSRLVFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V GN V + +G L+ Y +EI+ +LL S++GA L RR I R+ Sbjct: 115 FQG-VTSGNAVSPKAVGIRLFGPYLLAVEIASMLLLSSLVGAYHL---GRRFIVRR 166 >gi|256593098|gb|ACV03505.1| NADH dehydrogenase subunit 6 [Acanella eburnea] gi|256593101|gb|ACV03507.1| NADH dehydrogenase subunit 6 [Orstomisis crosnieri] gi|256593104|gb|ACV03509.1| NADH dehydrogenase subunit 6 [Gorgonisis sp. SCF-2009] gi|256593107|gb|ACV03511.1| NADH dehydrogenase subunit 6 [Pteronisis incerta] gi|256593110|gb|ACV03513.1| NADH dehydrogenase subunit 6 [Plexipomisis sp. SCF-2009] gi|256593113|gb|ACV03515.1| NADH dehydrogenase subunit 6 [Primnoisis cf. deliculata SCF-2009] Length = 90 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 59/86 (68%), Gaps = 7/86 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MNSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK 88 VGA+ + FLF+IM+ + +P K Sbjct: 60 VGAIAILFLFVIML------IQQPNK 79 >gi|242310563|ref|ZP_04809718.1| predicted protein [Helicobacter pullorum MIT 98-5489] gi|239522961|gb|EEQ62827.1| predicted protein [Helicobacter pullorum MIT 98-5489] Length = 187 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 8/171 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY FS + + +VVT +N +Y++ +L + +G F LLGAEF+ ++ +VVY Sbjct: 3 EAIAFYTFSALTLAMFLIVVTTKNILYALSALAAGMIFVSGFFFLLGAEFLGVVQIVVYT 62 Query: 64 GAVIVFFLFIIMMLDI----DIEVAEPRKKRGFLGSFFIGILAAELI-VCASNFMVFSAE 118 GAVI + F +M D + + P+ +G + ++ + + A N S + Sbjct: 63 GAVIALYAFAMMFFDAQKLQNERIENPKLLFLLVGLGALLLVLIVVAPIIAQNLSQISPQ 122 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + V NV+ +G VL+T++ P EI+ +LL++MI I+L + R Sbjct: 123 IPVKEEV---GNVQMVGYVLFTKFLIPFEIAAIMLLVAMIAGIILAGKGMR 170 >gi|284050277|ref|ZP_06380487.1| NADH dehydrogenase subunit J [Arthrospira platensis str. Paraca] gi|291568239|dbj|BAI90511.1| NADH dehydrogenase subunit 6 [Arthrospira platensis NIES-39] Length = 206 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 19/174 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F L + M I S+ VV ++N +YS F L F++ AGL+LLL A+FVA +++YV Sbjct: 8 QVVSFGLLTIMMISSALGVVLLKNIVYSAFLLGGVFMSMAGLYLLLNADFVAAAQVLIYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNF-----MVFSA 117 G+V V LF IM+++ K++ F G+ A +VC F MV S Sbjct: 68 GSVNVLILFGIMLVN---------KQQDFRVLPNAGLRQIATAVVCVGLFALLSTMVLST 118 Query: 118 EGELSRLVFK-GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 ++ V ++ IG+ +T + P E++ LL++M+GAIVL RRD Sbjct: 119 PWSVTAAVVSIESSAIAIGEHFFTDFLLPFELASVFLLMAMVGAIVL---ARRD 169 >gi|256390060|ref|YP_003111624.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora acidiphila DSM 44928] gi|256356286|gb|ACU69783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora acidiphila DSM 44928] Length = 195 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ L VTVRN +++ L+ A AG +LLL AEFVA + +++YVGAV Sbjct: 17 FVLVGLLTFGAAVLTVTVRNLVHAALWLVVALGGLAGCYLLLAAEFVAWVQVLIYVGAVA 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V LF +M+ I + +G+ A ++V V + + R V Sbjct: 77 VLLLFGLMLTRAPIGRTTELDSGNRWAAAVVGLATAGVLVTVIGDAVRTTWFDPRRNVVN 136 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 G + +G L+ + P E+ +LL +++GAIVL R+D+S E P Sbjct: 137 G-TAKAVGSSLFRYWVLPFELLSVLLLAALVGAIVL--------SRRDVSADAEGAP 184 >gi|332971170|gb|EGK10134.1| NADH-quinone oxidoreductase subunit J [Psychrobacter sp. 1501(2011)] Length = 241 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 59/96 (61%), Gaps = 2/96 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +AII+S V+ + NP++++ S+I + AG+F +LGA F + ++VY GA++ Sbjct: 15 FYALGLVAIIASLRVIMLANPVHAILSMIVTLLALAGIFFILGAPFAGALQVIVYAGAIL 74 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103 V F+F+IMML++ + E K +L S + AA Sbjct: 75 VLFVFVIMMLNLGTKNEERESK--WLSSDTWAVPAA 108 >gi|197116571|ref|YP_002136998.1| NADH dehydrogenase I subunit J [Geobacter bemidjiensis Bem] gi|197085931|gb|ACH37202.1| NADH dehydrogenase I, J subunit [Geobacter bemidjiensis Bem] Length = 160 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 11/168 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+ + + +I + +T R + ++ L+ +F A +F LLGA FVA + +++Y Sbjct: 1 MERTIFYILAAVTVIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPFVAALEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA++V FLF+IMM +EVA P K K F + A L++ + G+ Sbjct: 61 AGAIMVLFLFVIMM----VEVASPEKLAKPAFSDWW----PALVLVLVVVASLTVLVTGQ 112 Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + G V +VL+T+Y +E+ LL +++GA+ L R Sbjct: 113 APPVPGAGAQTVRQFSQVLFTRYGVAIELVSMQLLFALVGALYLGRRR 160 >gi|229821700|ref|YP_002883226.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beutenbergia cavernae DSM 12333] gi|229567613|gb|ACQ81464.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beutenbergia cavernae DSM 12333] Length = 286 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 96/174 (55%), Gaps = 4/174 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + + +I++ ++ R +++ S++F V A L+ L A F+ + +VVY Sbjct: 11 EAVLFWVLAPLMVIAALGLLFARKAVHAAISVVFVMVALAFLYTALEAPFLGVAQVVVYT 70 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ F+F++M++ +D V E + + ++ F LA+ LI + + A+G L Sbjct: 71 GAVMTLFVFVLMLVGVDASDSVVETLQGQRWIAVLFGVGLASVLIGVIATATLPDAQG-L 129 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + GN V + ++++ Q+ + E+ G +L+ + +GAI L R R KR Sbjct: 130 AEVNTDGNPV-GVARLIFGQFVFAFELVGALLITAALGAITLTHRERLGRKRDQ 182 >gi|91200371|emb|CAJ73417.1| strongly similar to NADH dehydrogenase I chain J [Candidatus Kuenenia stuttgartiensis] Length = 189 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 101/183 (55%), Gaps = 16/183 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +A++S+ +V+T +N ++++ LI + ++ + +F +LGA F+A + +++Y GA++ Sbjct: 10 FYIASIVAVVSTLMVITRKNAVHALLYLIVSLLSVSIIFFILGAPFMAALEVIIYAGAIM 69 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ E A + + + ++ +++ ++ G+ + Sbjct: 70 VLFIFVIMMLNLGSEAARMENQLLNPKMWIVPVILTLILIIEFIIVLIKINGQ------E 123 Query: 128 GNNV----ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL-ES 182 N+V + +G L+ Y +E++ +LL ++GA H K++ + + L E+ Sbjct: 124 YNSVIISPKQVGISLFGTYLLGVELAAMLLLAGIVGA-----YHLGKEKKKILHRYLAET 178 Query: 183 NPD 185 PD Sbjct: 179 EPD 181 >gi|262195157|ref|YP_003266366.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliangium ochraceum DSM 14365] gi|262078504|gb|ACY14473.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliangium ochraceum DSM 14365] Length = 282 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 16/195 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V SL F+LF+ + + S V+T RN I +V ++ F A ++ +L A F+A I ++V Sbjct: 90 VGASLMFWLFALLTVGGSIFVITRRNLISAVMGMVGTFFAIAAVYTMLFAHFLAAIQVLV 149 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAEG 119 Y GA++V F+F+IM+L+ + EP + G +G+ L A L+ + A + V + Sbjct: 150 YAGAIMVLFVFVIMILNKPED--EPWGRSGIIGNVLGSALVAYLLWRIGAVLWAVPVSPA 207 Query: 120 EL------------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +L + V + IG+ L+ Y +P E +LL++++GA+ + H Sbjct: 208 QLLPPGGVTVVTGVTETVHDYGSTMAIGQNLFRDYLFPFEAVSLVLLIAVVGALAVARPH 267 Query: 168 RRDIKRQDISKQLES 182 + + + Sbjct: 268 EAPPPAMEAEQTTNA 282 >gi|320353967|ref|YP_004195306.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] gi|320122469|gb|ADW18015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] Length = 187 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 3/179 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF + M I S L +++RN ++SV ++ F + AGL+L L AEF+A + ++VY GA+ Sbjct: 6 FFGYCALMIIASGILAISLRNLVHSVLMVLVLFFHMAGLYLTLNAEFLAAVQIIVYAGAI 65 Query: 67 IVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RL 124 +V +LF++ ++ + E+ + +LG LA L+ F +G S Sbjct: 66 LVLYLFVLFLVSLREELHLDAFVPGAWLGRIIAVGLAVGLLYVIPAF-TLGEKGTWSVSA 124 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + + + + +G+ LY+ Y P EI+G ILL+++IG +VL R + D E Sbjct: 125 IRELTHTKALGQELYSAYLLPFEIAGLILLVALIGGLVLARREEVPLPGADADPSPEHK 183 >gi|11466755|ref|NP_039351.1| NADH dehydrogenase subunit 6 [Marchantia polymorpha] gi|128802|sp|P06266|NU6C_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|11726|emb|CAA28137.1| unnamed protein product [Marchantia polymorpha] Length = 191 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 25/188 (13%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++F +L S + I+ S V+ + N +YS L F FV + L+LLL A+FVA +++YV Sbjct: 9 ETIFLFLESGL-ILGSLGVILLTNIVYSALFLGFVFVCISLLYLLLNADFVAAAQILIYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSAEGE 120 GAV V +F +M+++ ++ F + IG L +C S F++ F + Sbjct: 68 GAVNVLIIFAVMLIN-------KKQYSNFFVYWTIGD-GITLTLCTSIFLLLNNFISNTS 119 Query: 121 LSR--------LVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 S+ LV K N V +IG L T++ P E+ ILL+++IGAI L R + Sbjct: 120 WSKIFLMTKPNLVVKDIILINTVRHIGSELLTEFLLPFELMSIILLVALIGAITLARREK 179 Query: 169 R-DIKRQD 175 + ++++ D Sbjct: 180 KIELEKND 187 >gi|83815364|ref|YP_445567.1| NADH dehydrogenase i, j subunit [Salinibacter ruber DSM 13855] gi|83756758|gb|ABC44871.1| NADH dehydrogenase i, j subunit [Salinibacter ruber DSM 13855] Length = 207 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 84/148 (56%), Gaps = 3/148 (2%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 ++ RNP+ S L+ AGL+L L A F+ +I ++VY GA++V FLF+IM+L++ Sbjct: 59 MIIARNPVSSALWLVLNLFCIAGLYLTLNASFIGVIQILVYAGAIMVLFLFVIMLLNLSA 118 Query: 82 EVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 + +G F +G +L+ L V A F + + + + + ++G++L+ Sbjct: 119 LPELEEIEWASIGGFAVGLVLLSQLLYVVALQFEL-GVDPIGAEAAAEAGSAASLGEILF 177 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRH 167 T+YA L+++G +LL + +GA++L R Sbjct: 178 TRYALHLQVAGILLLAATVGAVLLAQRR 205 >gi|294507450|ref|YP_003571508.1| NADH dehydrogenase I, J subunit [Salinibacter ruber M8] gi|294343778|emb|CBH24556.1| NADH dehydrogenase I, J subunit [Salinibacter ruber M8] Length = 169 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 84/149 (56%), Gaps = 5/149 (3%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 + RNP+ S L+ AGL+L L A F+ +I ++VY GA++V FLF+IM+L++ Sbjct: 22 IIARNPVSSALWLVLNLFCIAGLYLTLNASFIGVIQILVYAGAIMVLFLFVIMLLNLSAL 81 Query: 83 VAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT 140 + +G F +G +L+ L V A F + + + + + ++G++L+T Sbjct: 82 PELEEIEWASIGGFAVGLVLLSQLLYVVALQFEL-GVDPIGAEAAAEAGSAASLGEILFT 140 Query: 141 QYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +YA L+++G +LL + +GA+ +L RR Sbjct: 141 RYALHLQVAGILLLAATVGAV--LLAQRR 167 >gi|318057834|ref|ZP_07976557.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces sp. SA3_actG] gi|318077144|ref|ZP_07984476.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces sp. SA3_actF] Length = 304 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 96/183 (52%), Gaps = 12/183 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V + ++S L + A +L GA F+ ++ +VVY Sbjct: 25 EAVQFWILGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 84 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVFSAE 118 GAV++ FLF++M++ + A K G ++ +L A L+ N V + Sbjct: 85 GAVMMLFLFVVMLVGV---TAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQ 141 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDI 176 G + G NV+ + + ++T Y + EI+G +L+ + +GA+VL R R R + ++++ Sbjct: 142 G--TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTERALNQREM 199 Query: 177 SKQ 179 +++ Sbjct: 200 AEK 202 >gi|302521203|ref|ZP_07273545.1| NADH dehydrogenase subunit J [Streptomyces sp. SPB78] gi|302430098|gb|EFL01914.1| NADH dehydrogenase subunit J [Streptomyces sp. SPB78] Length = 304 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 96/183 (52%), Gaps = 12/183 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V + ++S L + A +L GA F+ ++ +VVY Sbjct: 25 EAVQFWILGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 84 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVFSAE 118 GAV++ FLF++M++ + A K G ++ +L A L+ N V + Sbjct: 85 GAVMMLFLFVVMLVGV---TAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQ 141 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDI 176 G + G NV+ + + ++T Y + EI+G +L+ + +GA+VL R R R + ++++ Sbjct: 142 G--TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTERALNQREM 199 Query: 177 SKQ 179 +++ Sbjct: 200 AEK 202 >gi|254282451|ref|ZP_04957419.1| NADH dehydrogenase i chain j [gamma proteobacterium NOR51-B] gi|219678654|gb|EED35003.1| NADH dehydrogenase i chain j [gamma proteobacterium NOR51-B] Length = 169 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 94/163 (57%), Gaps = 13/163 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L FYL + +A+ ++ + +T N +++ LI + + A +F +LGA F A + +++Y Sbjct: 1 MTVLLFYLTAALAVFATVVALTRANAAHALIYLILSLLAVAVMFFMLGAPFAAALEVLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS-FFI--GILAAELIVCASNFMVFSAEG 119 GA++V F+F+IMML++ A ++RG+L + +I G+L L+V +VF G Sbjct: 61 AGAIMVLFVFVIMMLNLGD--AGEEQERGWLDARLWIVPGLLTTVLLV--EMLLVFGESG 116 Query: 120 ELSRLVFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGA 160 + G++V + +G LY Y +E++ +L+ +++GA Sbjct: 117 VTT----SGHSVSPKEVGISLYGPYVLAVELASMLLMAALVGA 155 >gi|209522710|ref|ZP_03271268.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arthrospira maxima CS-328] gi|209496759|gb|EDZ97056.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arthrospira maxima CS-328] Length = 208 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 21/175 (12%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F L + M I S+ VV ++N +YS F L F++ AGL+LLL A+FVA +++YV Sbjct: 10 QVVSFGLLTIMMIGSALGVVLLKNIVYSAFLLGGVFMSMAGLYLLLNADFVAAAQVLIYV 69 Query: 64 GAVIVFFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFS 116 G+V V LF IM+++ D V R A +VC F MV S Sbjct: 70 GSVNVLILFGIMLVNKQQDFRVLPNAGLRQI----------ATAVVCVGLFALLSTMVLS 119 Query: 117 AEGELSRLVFK-GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 ++ V ++ IG+ +T + P E++ LL++M+GAIVL RRD Sbjct: 120 TPWSVTTTVVTIESSAIAIGEHFFTDFLLPFELASVFLLMAMVGAIVL---ARRD 171 >gi|86158999|ref|YP_465784.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Anaeromyxobacter dehalogenans 2CP-C] gi|85775510|gb|ABC82347.1| NADH dehydrogenase subunit J [Anaeromyxobacter dehalogenans 2CP-C] Length = 211 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 11/172 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FY + + + + V RN +YS F L+ A + A L++LL A+FVA+ L++Y Sbjct: 47 LPDVLFYALAVLTVAGAAGVALSRNILYSTFGLLVALLGAGSLYVLLSADFVAVTQLLIY 106 Query: 63 VGAVIVFFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +G V+V LF +M+ + DI V+ F+ A ++ A + G Sbjct: 107 IGGVLVLILFAVMLTNRITDINVSNTSFGLFGGFLLFV---AGAPVLLAVALLTPWQAGA 163 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + L + IG +++ P E++ +LL +++GAIV+ R++IK Sbjct: 164 AAPL---APTTQAIGDAFLSRWLLPFEVASLVLLSTLVGAIVI---ARKEIK 209 >gi|15616782|ref|NP_239994.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681537|ref|YP_002467922.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682093|ref|YP_002468477.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471218|ref|ZP_05635217.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11133972|sp|P57260|NUOJ_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|25285206|pir||H84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain J [imported] - Buchnera sp. (strain APS) gi|10038845|dbj|BAB12880.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621826|gb|ACL29982.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624380|gb|ACL30535.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085904|gb|ADP65986.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086477|gb|ADP66558.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087058|gb|ADP67138.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087615|gb|ADP67694.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 170 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 61/91 (67%), Gaps = 4/91 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ SF A++S+F V+ +N +YS+ LI + ++ AG+F LGA F + +++Y GA+I Sbjct: 5 FYVCSFAAVVSTFFVIIQKNAVYSLVYLIISLLSIAGVFFSLGAFFAGSLEVIIYAGAII 64 Query: 68 VFFLFIIMMLDI----DIEVAEPRKKRGFLG 94 V F+F+IMML+I ++E A K R ++G Sbjct: 65 VLFVFVIMMLNISDKYNLEEAHYLKPRFWIG 95 >gi|315465332|emb|CBQ72567.1| NADH:ubiquinone oxidoreductase chain 6 [Sporisorium reilianum] Length = 226 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 48/68 (70%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AI+S LV+T +NP+ SV LI FVN AG +LLG F+ + L+VYVGAV V FLF+I Sbjct: 13 AILSGILVITSKNPVISVLFLISVFVNVAGYLVLLGVGFIGISYLIVYVGAVTVLFLFVI 72 Query: 75 MMLDIDIE 82 MML++ + Sbjct: 73 MMLNLQLT 80 >gi|295837116|ref|ZP_06824049.1| NADH dehydrogenase I, J subunit [Streptomyces sp. SPB74] gi|197697227|gb|EDY44160.1| NADH dehydrogenase I, J subunit [Streptomyces sp. SPB74] Length = 283 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 96/183 (52%), Gaps = 12/183 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V + ++S L + A +L GA F+ ++ +VVY Sbjct: 25 EAVQFWVLGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYT 84 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-----AAELIVCASNFMVFSAE 118 GAV++ FLF++M++ + A K G ++ +L A L+ N V + Sbjct: 85 GAVMMLFLFVVMLVGV---TAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQ 141 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDI 176 G + G NV+ + + ++T Y + EI+G +L+ + +GA+VL R R R + ++++ Sbjct: 142 G--TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTERALNQREM 199 Query: 177 SKQ 179 +++ Sbjct: 200 AEK 202 >gi|145596567|ref|YP_001160864.1| NADH dehydrogenase subunit J [Salinispora tropica CNB-440] gi|145305904|gb|ABP56486.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora tropica CNB-440] Length = 256 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 26/209 (12%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +A+I + +V RN ++S L+ + ++L F+ ++ ++VY Sbjct: 17 EAVTFWILAPLALIGAIGMVAARNAVHSALMLVLTMLCLGIFYVLQAGPFIGVVQIIVYT 76 Query: 64 GAVIVFFLFIIMMLD---IDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNF 112 GA+++ FLF++M++ D + R +R GF G G+ A A Sbjct: 77 GAIMMLFLFVLMLVGRGASDSLIETLRGQRIAALVLGVGFAGLVGTGMYRALAGSTAVGL 136 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +AEG NV+ I ++L+T+Y E++ +L+ + +GA+VL RR Sbjct: 137 TTANAEG----------NVQGIARLLFTKYVLAFELTSALLITAAVGAMVLAHIERRRED 186 Query: 173 RQDISKQLES--NPDNSIVMVKVKSGKGI 199 R D +++ P N K G G+ Sbjct: 187 RMDQVATMKARFRPGN---YPGPKPGPGV 212 >gi|78183864|ref|YP_376298.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9902] gi|116071524|ref|ZP_01468792.1| NADH dehydrogenase subunit J [Synechococcus sp. BL107] gi|78168158|gb|ABB25255.1| NADH dehydrogenase I chain 6 [Synechococcus sp. CC9902] gi|116065147|gb|EAU70905.1| NADH dehydrogenase subunit J [Synechococcus sp. BL107] Length = 200 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 23/178 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + S + + + VV + N +YS F L F+ AGL+LLL A FVA +++YVGA+ Sbjct: 12 FLVLSAVVVTGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVMIYVGAIN 71 Query: 68 VFFLFIIMMLDI--DIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 V LF IM+++ D++ +A +R G VC + + Sbjct: 72 VLILFAIMLVNKREDLKAIANLTTRRIVSGG-----------VCLGLLALLVRVVVTTPW 120 Query: 125 VFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G IG+ L+T Y P E++ +LL++MIGAIVL RRD+ D+ Sbjct: 121 SLPGPAAVGEEATARIGEHLFTDYLLPFELASVLLLMAMIGAIVL---ARRDVLANDV 175 >gi|302035617|ref|YP_003795939.1| NADH-quinone oxidoreductase membrane subunit J [Candidatus Nitrospira defluvii] gi|300603681|emb|CBK40012.1| NADH-quinone oxidoreductase, membrane subunit J [Candidatus Nitrospira defluvii] Length = 174 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 2/174 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +FF F+ ++I++ L V ++NP+ +L+ ++ +GLF+LL AEF+ + ++VY Sbjct: 1 MAFVFFAYFAVVSIVAGILTVALKNPVQCGLALLALLLHVSGLFVLLNAEFLWAVQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++V +LF++M+L++ + K + L IG+ ++ S F + Sbjct: 61 AGAILVLYLFVLMLLNLKTDDRYFHAKAPYLLAPAVIGLAYLLFLLVRSPFGGSRGDAST 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ++ G + IG +++ Y EI G L +++GAIVL + R+D Sbjct: 121 AAILING-DAHAIGIKMFSDYLLQFEIIGVFLTGAIVGAIVLAKTPKSIETRRD 173 >gi|218886694|ref|YP_002436015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757648|gb|ACL08547.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 168 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 17/177 (9%) Query: 1 MVMQSLFFYLFSFMAII-SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 M ++ + F F+ I+ F+ V + + ++ L+ + AG++LLL A F+A + + Sbjct: 1 METPAILAFAFYFLVIVVGCFMAVGCASLVRALVGLVATLLGVAGMYLLLNAPFMAFMQI 60 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCASNFM 113 ++YVGA+ V F +M+ D E E PR +G L + G L A +++ Sbjct: 61 LIYVGAICVLIFFALMLARADAEGDEADPAPAPRTFKGVLAAMLPGTLLAPILMLHPT-- 118 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S+++ + +G+ L Y P E+ +LL+SM GA VL++ RRD Sbjct: 119 -------ASKMIPAEVPLAELGRRLMEDYVLPFELISMVLLISMAGA-VLLVWERRD 167 >gi|159039966|ref|YP_001539219.1| NADH dehydrogenase subunit J [Salinispora arenicola CNS-205] gi|157918801|gb|ABW00229.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora arenicola CNS-205] Length = 256 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 100/209 (47%), Gaps = 26/209 (12%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +A++ + +V RN ++S L+ + +++ F+ ++ ++VY Sbjct: 17 EAVTFWILAPLALLGAIGMVAARNAVHSALWLVLTMLCLGVFYVVQAGPFIGLVQIIVYT 76 Query: 64 GAVIVFFLFIIMMLD---IDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNF 112 GA+++ FLF++M++ D + R +R GF G G+ A A+ Sbjct: 77 GAIMMLFLFVLMLVGRGASDSLIETLRGQRIAALVLGIGFAGLVGTGLYRALAGGTAAGL 136 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +AEG NV+ + ++L+T+Y E++ +L+ + +GA+VL RR Sbjct: 137 TAANAEG----------NVQGVARLLFTKYVLAFELTSALLITAAVGAMVLAHVERRRED 186 Query: 173 RQDISKQLES--NPDNSIVMVKVKSGKGI 199 R D +++ P N K G G+ Sbjct: 187 RMDQVATMKARFRPGN---YPGPKPGPGV 212 >gi|86606291|ref|YP_475054.1| NADH dehydrogenase subunit J [Synechococcus sp. JA-3-3Ab] gi|86554833|gb|ABC99791.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6 [Synechococcus sp. JA-3-3Ab] Length = 202 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 22/204 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S MAI + VV N +YS F L F++ AGL+LLL A+FVA +++YV Sbjct: 8 QLVTFGVLSAMAIGFALGVVWAPNIVYSGFLLGGVFLSMAGLYLLLNADFVAAAQVLIYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSAE 118 GAV V LF IM+++ A P K LG G+ AA VC F M + Sbjct: 68 GAVNVLILFAIMLVNRRYTFA-PLK----LGWLRNGVTAA---VCLGLFALLTAMALNTP 119 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDI 176 +L + ++ +G ++ Y P E++ +LL+++IGAIVL R + D+ Sbjct: 120 WQLEP-IQPTSSALVMGGHFFSDYLLPFELASVLLLMALIGAIVLARREFVVPQAQEGDL 178 Query: 177 S------KQLESNPDNSIVMVKVK 194 S QLES + +V + Sbjct: 179 SLLERARPQLESESERPAELVSTR 202 >gi|254391146|ref|ZP_05006353.1| NADH dehydrogenase subunit J [Streptomyces clavuligerus ATCC 27064] gi|197704840|gb|EDY50652.1| NADH dehydrogenase subunit J [Streptomyces clavuligerus ATCC 27064] Length = 296 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 8/183 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A++ + + ++ ++S L V A +L GA F+ ++ +VVY Sbjct: 10 EAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVVQIVVYT 69 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFF---IGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + + E K + +L + G+L L+ N + Sbjct: 70 GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVL---LVAGLGNASLNEFN 126 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R + Sbjct: 127 GLGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERTEQARTQREQ 186 Query: 179 QLE 181 E Sbjct: 187 AEE 189 >gi|53804531|ref|YP_113812.1| NADH dehydrogenase I, J subunit [Methylococcus capsulatus str. Bath] gi|53758292|gb|AAU92583.1| NADH dehydrogenase I, J subunit [Methylococcus capsulatus str. Bath] Length = 164 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 92/164 (56%), Gaps = 15/164 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FYL + +A+ ++F+VV N ++++ LI + + + +F LLGA F A++ +++Y Sbjct: 1 MELILFYLSALVAVAATFMVVIQCNTVHALLYLIVSLLASGFIFYLLGAFFAAVLEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFS 116 GA+IV F+F++MML++ + E ++R +L GI +CA F ++ S Sbjct: 61 AGAIIVLFVFVVMMLNLGSKTIE--QERQWLCP---GIWHGPAALCAILFAELLFILMRS 115 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 E R+V + + +G L+ Y +E + +LL ++GA Sbjct: 116 GTHEAGRIV----DSKALGIALFGPYLLAVETASMLLLAGLVGA 155 >gi|294814403|ref|ZP_06773046.1| NADH-quinone oxidoreductase subunit J [Streptomyces clavuligerus ATCC 27064] gi|326442793|ref|ZP_08217527.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces clavuligerus ATCC 27064] gi|294327002|gb|EFG08645.1| NADH-quinone oxidoreductase subunit J [Streptomyces clavuligerus ATCC 27064] Length = 305 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 8/183 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A++ + + ++ ++S L V A +L GA F+ ++ +VVY Sbjct: 19 EAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVVQIVVYT 78 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFF---IGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ + + E K + +L + G+L L+ N + Sbjct: 79 GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVL---LVAGLGNASLNEFN 135 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R + Sbjct: 136 GLGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERTEQARTQREQ 195 Query: 179 QLE 181 E Sbjct: 196 AEE 198 >gi|307131806|ref|YP_003883822.1| NADH:ubiquinone oxidoreductase membrane subunit J [Dickeya dadantii 3937] gi|306529335|gb|ADM99265.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Dickeya dadantii 3937] Length = 183 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 94/178 (52%), Gaps = 11/178 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY GA++ Sbjct: 5 FYATAIIAVLATLRVITHTNPVHALLYLIVSLLAVAGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSRLVF 126 V F+F++MML++ V E ++K S ++G LI+ A + S G+ Sbjct: 65 VLFVFVVMMLNLGNSVDE-QEKLWLKPSVWVGPGVLSLILLAIIVKGILSVTGQ----NI 119 Query: 127 KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 GN + + +G L+ Y +E++ +LL ++ A + +R K QD K+ Sbjct: 120 AGNIVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGELIAKDQDADKK 177 >gi|152971208|ref|YP_001336317.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895797|ref|YP_002920533.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae NTUH-K2044] gi|262043320|ref|ZP_06016449.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330003564|ref|ZP_08304679.1| NADH-quinone oxidoreductase subunit J [Klebsiella sp. MS 92-3] gi|150956057|gb|ABR78087.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548115|dbj|BAH64466.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039344|gb|EEW40486.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536904|gb|EGF63203.1| NADH-quinone oxidoreductase subunit J [Klebsiella sp. MS 92-3] Length = 184 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 100/185 (54%), Gaps = 20/185 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ VVT NP++++ LI + + AG+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVVTHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ E+ + RK +IG IL+A L+V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLGGTEIEQERKW--LQPGIWIGPAILSAVLLVV----IVYAILG-INDQ 117 Query: 125 VFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G N + +G L+ Y +E++ +LL ++ A I R++ + ++ S Sbjct: 118 GIDGAAINAKEVGIALFGPYVLAVELASMLLLAGLVVAF--------HIGREERAGEVLS 169 Query: 183 NPDNS 187 N N Sbjct: 170 NRLND 174 >gi|148653488|ref|YP_001280581.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Psychrobacter sp. PRwf-1] gi|148572572|gb|ABQ94631.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Psychrobacter sp. PRwf-1] Length = 234 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 12/145 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +AII+S V+ + NP++++ S+I + + AG+F ++GA F + ++VY GA++ Sbjct: 15 FYALGLVAIIASLRVIMLANPVHAILSMIVSLLALAGIFFIIGAPFAGALQVIVYAGAIL 74 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS--------NFMVFSAEG 119 V F+F+IMML++ ++ ++ +L S + AA V A V +A+G Sbjct: 75 VLFVFVIMMLNLGVK--NDARESLWLSSDVWAVPAALSFVIAVVLGYILSLGNGVHNADG 132 Query: 120 ELSRLVFKGNNV--ENIGKVLYTQY 142 +++ + + + +G L+T+Y Sbjct: 133 TVAQAMIGAQTISAKQVGIALFTEY 157 >gi|289548986|ref|YP_003473974.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis albus DSM 14484] gi|289182603|gb|ADC89847.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis albus DSM 14484] Length = 176 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 2/169 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ F FS A++ VV + NPIY + SL+ + ++ AG+F + GAE V + L++Y Sbjct: 1 MQWAAFGAFSLSALLFGLGVVLLPNPIYVILSLLASLISIAGVFFVAGAELVGALQLLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120 A+ VF++F++ + + + + R G L + +L ++IV + S +GE Sbjct: 61 AVAITVFYVFVLTAVPWEKALKKDSHYRVEGALTFPLLLLLYGQVIVTFLLGVSVSPKGE 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + ++ N E +G +L+++Y E+ +LL+ M+GAI++ + R Sbjct: 121 IRNILKDLTNTEAVGVILFSKYFLAFELVSLVLLIGMLGAILIGRKEER 169 >gi|86739260|ref|YP_479660.1| NADH dehydrogenase subunit J [Frankia sp. CcI3] gi|86566122|gb|ABD09931.1| NADH dehydrogenase subunit J [Frankia sp. CcI3] Length = 267 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 102/193 (52%), Gaps = 16/193 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ S +A++++ +V VR+ ++S L+ A +L+ A F+ + ++VY Sbjct: 19 EAATFWILSPVAVLAALGMVMVRSAVHSALLLVANLFCVAVFYLIQEAPFLGFVQIIVYA 78 Query: 64 GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIV--CASNFMVFSAE 118 GA++V FLF++M++ +D V R +R LG+ G+ A L+ S SA+ Sbjct: 79 GAIMVLFLFVLMLVGVDSSDSLVETIRGQR--LGAIVFGLGFAGLLAFPIGSAIDGGSAK 136 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-------RDI 171 G LS G NV+ IG++L+T Y + E +L+++ IG +VL R R R+ Sbjct: 137 G-LSE-ANTGGNVQAIGRLLFTDYVFVFEAISALLVVAAIGTMVLGHREREGGRISQREW 194 Query: 172 KRQDISKQLESNP 184 R+ ++ + P Sbjct: 195 MRRRFTEGRQVTP 207 >gi|239980143|ref|ZP_04702667.1| NADH dehydrogenase subunit J [Streptomyces albus J1074] gi|291451998|ref|ZP_06591388.1| NADH dehydrogenase subunit J [Streptomyces albus J1074] gi|291354947|gb|EFE81849.1| NADH dehydrogenase subunit J [Streptomyces albus J1074] Length = 271 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/184 (23%), Positives = 94/184 (51%), Gaps = 16/184 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A++ + V ++ ++S L + A +L GA F+ ++ +VVY Sbjct: 13 EAVQFWILGTVAVLGALSTVLMKKAVHSALCLAATMIVLAVFYLANGAYFLGIVQIVVYT 72 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ FLF++M++ + A K G ++ LAA ++ + G++ Sbjct: 73 GAIMMLFLFVVMLVGV---TAADSLKETLKGQRWLAALAA----LGFGILLIAGIGQVGI 125 Query: 124 LVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 F G NV+ + +++T+Y + EI+G +L+ + +GA ++L HR +R Sbjct: 126 SQFNGLAAANSGGNVQGLAALIFTKYVFAFEITGALLITATVGA--MLLTHRERTERAST 183 Query: 177 SKQL 180 ++L Sbjct: 184 QREL 187 >gi|206577065|ref|YP_002237332.1| NADH-quinone oxidoreductase, J subunit [Klebsiella pneumoniae 342] gi|288934262|ref|YP_003438321.1| NADH dehydrogenase (quinone) [Klebsiella variicola At-22] gi|290508465|ref|ZP_06547836.1| NADH dehydrogenase I subunit J [Klebsiella sp. 1_1_55] gi|206566123|gb|ACI07899.1| NADH-quinone oxidoreductase, J subunit [Klebsiella pneumoniae 342] gi|288888991|gb|ADC57309.1| NADH dehydrogenase (quinone) [Klebsiella variicola At-22] gi|289777859|gb|EFD85856.1| NADH dehydrogenase I subunit J [Klebsiella sp. 1_1_55] Length = 184 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 102/185 (55%), Gaps = 20/185 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ VVT NP++++ LI + + AG+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVVTHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ +E ++R +L +IG IL+A L+V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLG--GSEIEQERKWLQPGIWIGPAILSAVLLVV----IVYAILG-INDQ 117 Query: 125 VFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G N + +G L+ Y +E++ +LL ++ A I R++ + ++ S Sbjct: 118 GIDGAAINAKEVGIALFGPYVLAVELASMLLLAGLVVAF--------HIGREERAGEVLS 169 Query: 183 NPDNS 187 N N Sbjct: 170 NRVND 174 >gi|307152385|ref|YP_003887769.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 7822] gi|306982613|gb|ADN14494.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 7822] Length = 204 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 102/199 (51%), Gaps = 15/199 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F L F+ I ++ VV + N +YS F L F++ AG+++LL A+FVA +++YVGAV Sbjct: 12 FLILAGFL-ITAALGVVLLSNIVYSAFLLAGVFLSIAGIYILLNADFVAAAQILIYVGAV 70 Query: 67 IVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--ELSR 123 V LF IM+++ + PR+ ++ G++ L ++ + S Sbjct: 71 NVLILFAIMLVNKQEDFKTVPRR---WIRQIATGLVCLGLFALLGTMILITPWSINSTSP 127 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD----IKRQDISKQ 179 V + VE IGK ++ + P E++ +LL++M+GAI+L RRD +K + Sbjct: 128 AVVENTLVE-IGKHFFSDFLLPFELASILLLMAMVGAIIL---ARRDFIPELKSSEPGTT 183 Query: 180 LESNPDNSIVMVKVKSGKG 198 + P+ ++ ++SG Sbjct: 184 ALTLPERPRELISLESGSA 202 >gi|115304399|ref|YP_762704.1| NADH:ubiquinone oxidoreductase subunit 6 [Ustilago maydis] gi|121924030|sp|Q0H8W8|NU6M_USTMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|72256229|gb|AAZ67019.1| NADH:ubiquinone oxidoreductase subunit 6 [Ustilago maydis] Length = 226 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 48/68 (70%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S LV+T +NP+ SV LI FVN AG +LLG F+ + L+VY+GAV V FLF+I Sbjct: 13 AVLSGILVITSKNPVISVLFLISVFVNVAGYLVLLGVGFIGISYLIVYIGAVTVLFLFVI 72 Query: 75 MMLDIDIE 82 MML++ + Sbjct: 73 MMLNLQLT 80 >gi|7649019|gb|AAF65737.1|AF228525_7 F420H2 dehydrogenase subunit FpoJ [Methanosarcina mazei Go1] Length = 176 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 85/159 (53%), Gaps = 2/159 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ F L + + + + VV ++ + + +LI AGL++LL A+F+ +I ++VY Sbjct: 11 LETAVFGLLALVTVFFAIFVVIAKDVVRAGLALIMCMFGVAGLYILLNAQFLGVIQVLVY 70 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +GA+ V LF +M+ +I + R +F + +L ++V + ++ EL Sbjct: 71 IGAIGVLILFAVMLTKREIGGGPVQINRPL--AFLVCLLFVAVVVTGAFGTSWNTVSELP 128 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +N+E IG +++T + P E+ +LL S+IGAI Sbjct: 129 ENPADPSNIEGIGMLIFTHFVAPFEVLSIVLLASLIGAI 167 >gi|141061|sp|P03883|YMCC_EMENI RecName: Full=Uncharacterized 25.4 kDa protein in COX3 5'region; AltName: Full=URF-C gi|12706|emb|CAA30030.1| unnamed protein product [Emericella nidulans] gi|472821|gb|AAA99206.1| unknown protein [Emericella nidulans] Length = 228 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 35/197 (17%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +F ++I + RNP+ SV LI FVN AG+ +L G ++ + ++VYVGAV Sbjct: 32 FLDIFYIISITFGVFTIISRNPVVSVLFLIGLFVNIAGILILAGINYLGLSYILVYVGAV 91 Query: 67 IVFFLFIIMMLDIDIE--VAEPRKK---------------------------------RG 91 + FLFI+M+++I I ++E Sbjct: 92 SILFLFILMLINIRISELLSETNNDIPLAVLTVLLFYYIIGQVLPCNLTDKTIISSLSNR 151 Query: 92 FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGF 151 F G + I I IV + + + + + + + IG ++YT Y+ L IS Sbjct: 152 FTGIYNIDISNQSSIVGINQEIGYVSSKGWDNTLVEFTQISGIGNIMYTNYSIWLIISSV 211 Query: 152 ILLLSMIGAIVLMLRHR 168 ILLL M+GAIV+ ++ + Sbjct: 212 ILLLGMVGAIVITIKQK 228 >gi|212640512|ref|YP_002317032.1| NADH dehydrogenase subunit J [Anoxybacillus flavithermus WK1] gi|212561992|gb|ACJ35047.1| NADH dehydrogenase subunit J [Anoxybacillus flavithermus WK1] Length = 169 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 12/174 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + F++ S +A+ ++ + ++ V +L+F FV+ AG+++LL AEFVA + ++ Sbjct: 1 MSGQYIAFFVLSLIALGGGIFMLNLNKVVHMVVALVFTFVSIAGIYVLLSAEFVAAVQVL 60 Query: 61 VYVGAVIVFFLFIIMML---DIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMVFS 116 +Y GA+ + LF IM+ D P RK LG+ G ++ + F Sbjct: 61 IYSGAITIIMLFGIMLTRHQDDGQSTGSPLRKALALLGTVAFG----AVMYIGIRTLDFG 116 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +E + N E IG +Y++Y P E++ +LL+++IGA++L + ++ Sbjct: 117 SEA----VGLHDKNTEQIGIAMYSKYVIPFELASVLLLVALIGAVILAKKDDKE 166 >gi|207108911|ref|ZP_03243073.1| NADH dehydrogenase subunit J [Helicobacter pylori HPKX_438_CA4C1] Length = 166 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 20/170 (11%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYVGAVIV + F +M + Sbjct: 2 ALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFGMMFFN 61 Query: 79 IDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-LSRLVFKG------NN 130 EV E ++ L + G+ L LI+ A + GE LSR V N Sbjct: 62 SAAEVIERKQSPKILCALSFGVALLLTLILSAPSI------GENLSRQVNSNAIDAQIPN 115 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 ++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 116 IKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 165 >gi|56791568|gb|AAW30322.1| NADH dehydrogenase subunit 6 [Asarum sp. Qiu 96018] Length = 166 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 11/160 (6%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ FLF++ Sbjct: 6 ALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAASFLFVV 65 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRLVFK---- 127 MM +I I R S IG IL E+ I+ + + L +K Sbjct: 66 MMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYKVHAG 125 Query: 128 ----GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 N E +G +LYT Y + ILL++MIGAIVL Sbjct: 126 KVRSWTNFETLGNLLYTYYVVWFLVPSPILLVAMIGAIVL 165 >gi|162456308|ref|YP_001618675.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|161166890|emb|CAN98195.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 171 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 14/177 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + +L F + + + S+ LV RN I+S +L+ F+ AGL++ L A+F+A ++VY Sbjct: 4 LSALVFLGLAALTLGSAGLVAFSRNIIHSALALLGTFLGIAGLYVSLSADFIAATQVLVY 63 Query: 63 VGAVIVFFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAE 118 VG +V LF +M+ +++++ PR + G++ A L++ + + AE Sbjct: 64 VGGTLVLILFAVMLTSRIAEMKISNPRGGP----AVAFGLVTAVLLLLGRVATQTPWPAE 119 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQ 174 + + + +G +Y P E+ +LL +MIGA+VL R RR +R+ Sbjct: 120 AKPAM-----PSTAKLGHAFLGEYLLPFELGSVVLLAAMIGAVVLARRAVRRAWERE 171 >gi|167463147|ref|ZP_02328236.1| NADH dehydrogenase subunit J [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383092|ref|ZP_08056919.1| hypothetical protein PL1_1941 [Paenibacillus larvae subsp. larvae B-3650] gi|321152754|gb|EFX45380.1| hypothetical protein PL1_1941 [Paenibacillus larvae subsp. larvae B-3650] Length = 173 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 11/164 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F F+ AI + +VT IY V S F F++ AGL++LL AEFVA + +++Y GA+ Sbjct: 17 FLFFAMCAIGGAIYMVTFTKVIYMVLSAAFTFISLAGLYVLLEAEFVAFVQVLIYAGAIS 76 Query: 68 VFFLFIIMMLDIDIEVAEP--RKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGELSRL 124 + +F IMM E +P R + L IG LA L+ A FS GEL Sbjct: 77 ILMIFGIMMTKHRAE-EKPGGRVAQKVLTG--IGCLALFGLLFYAIQQSTFS-PGELR-- 130 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +N IGK+L++ + P EI +L ++ IGAIV+ R Sbjct: 131 --EEDNTLEIGKLLFSGHVIPFEIMSVLLTVAFIGAIVIAKREE 172 >gi|189346379|ref|YP_001942908.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium limicola DSM 245] gi|189340526|gb|ACD89929.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium limicola DSM 245] Length = 173 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F+ + + S+ VV +N IYS F+L+F F A L++ L A+F+A+ +VVYVG ++ Sbjct: 10 FYIFAAITVFSAAFVVFSKNVIYSAFALLFTFFGVAALYVFLSADFIAVTQIVVYVGGIL 69 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAEGEL--S 122 V LF +M + + + K L ++ L++ A+ F G S Sbjct: 70 VLLLFGVMFTN---SIMQTDLKSDVL-----HVVPGTLLLLATVGGLLFTFYTTGTWKPS 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + G+ VE IG ++Y P E++ +LL +IGA L R D R + Sbjct: 122 DVQLHGSVVERIGIETMSRYVLPFEMASILLLAVLIGAAFLA---RYDKVRNN 171 >gi|78186624|ref|YP_374667.1| NADH dehydrogenase I subunit 6 [Chlorobium luteolum DSM 273] gi|78166526|gb|ABB23624.1| NADH dehydrogenase subunit J [Chlorobium luteolum DSM 273] Length = 177 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 13/147 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ + ++S+ VV RN IYS FSL+F F A L++ L A+F+A+ +VVYVG ++ Sbjct: 10 FYLFAAITVLSAAFVVFSRNIIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVGGIL 69 Query: 68 VFFLFIIM----MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-S 122 V LF +M ++ D++ G L F+G LA L + ++ G + S Sbjct: 70 VLLLFGVMFTNKVMTTDLKADVLNVVPGAL--LFLGTLAGLL------YTFYTTNGWMPS 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEIS 149 + +G+ VE IG +++ P E++ Sbjct: 122 ETMLEGSVVERIGFETMSRFVLPFEMA 148 >gi|148358102|ref|YP_001249346.1| NADH:ubiquinone oxidoreductase subunit 6 [Gibberella zeae] gi|86142501|gb|ABC86616.1| NADH:ubiquinone oxidoreductase subunit 6 [Gibberella zeae] Length = 226 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 43/203 (21%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S A++ L++ +NPI SV LI F N + +L+G F+ + L+VY+GAV + FL Sbjct: 25 SITALLCGILIIINKNPIVSVIFLIGLFANISVYLILIGLTFIGLSYLIVYIGAVSILFL 84 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILA----------------------------- 102 FI+M+++I + + FI ILA Sbjct: 85 FILMLINIRTSELQSNNRNSVSLGLFITILANFTIFQILPYYMAILNNYSSKLNTILYYL 144 Query: 103 -------------AELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 + + +N M S+ + + G + IG +LYT + + ++ Sbjct: 145 PWNKFSDILNYINKNIDITNANIMFVSSNSWDNNMAETG-HTATIGHILYTSHNMWIFMA 203 Query: 150 GFILLLSMIGAIVLMLRHRRDIK 172 FILLL+M GAI++ +++ + I+ Sbjct: 204 SFILLLAMTGAIIITIKNEKAIQ 226 >gi|113170504|ref|YP_717295.1| nad6 [Ostreococcus tauri] gi|112806911|emb|CAL36417.1| unnamed protein product [Ostreococcus tauri] Length = 256 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 111/241 (46%), Gaps = 68/241 (28%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V+ +NP+YSV LI F N AGL LLL +F A+I L+VYVGA+ V FLF++MML D Sbjct: 20 MVIRSKNPVYSVLFLILVFCNTAGLLLLLNLDFFALIFLIVYVGAIAVLFLFVVMML--D 77 Query: 81 IEVAEPRKK-------RGFLGS-FFIGI----------LAAELIVCASNFMV-------- 114 I++AE ++ GF+G FFI L E + S M+ Sbjct: 78 IKLAEMQESIFFYLPIGGFIGLIFFIEFYFLFNKEFVPLHLETLSTGSTSMLTLQFYVYA 137 Query: 115 --------FSAEG--------------ELSRLVFKGN-NVENIGKVLYTQYAYPLE---- 147 FSA +L L + + N+E + Y P+E Sbjct: 138 FWAFVLYGFSAPHFAQKFRAYSTHFFEQLRGLEHQAHQNLEYVIWPTYVDSKTPVEALGQ 197 Query: 148 -----------ISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSG 196 ++ ILL++MIGAI+L L R ++RQ + +Q + D + + K+++ Sbjct: 198 VLYTYYFYFFLVASLILLIAMIGAIMLTLNPHRAVRRQQVFEQ--NARDFAKTVHKIRTL 255 Query: 197 K 197 K Sbjct: 256 K 256 >gi|326910750|gb|AEA11193.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii] gi|327176857|gb|AEA29865.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii] Length = 177 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVT--VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F + S +A++S LVV NP+ +VF + FV +GL + L +F AMI LVV Sbjct: 4 STILFGVLSSLALVSGGLVVRSGALNPVPAVFLFLLVFVLCSGLLVWLDLDFFAMIFLVV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAE----PRKKRGFLGSFFIGILA-----AELIVCASNF 112 Y GA++VFFLF++MM E E PR +G F+ L + S + Sbjct: 64 YAGAMVVFFLFVVMMCTFRREGREHEVAPRHTEFVVGLLFLSHLWLVLERSPRPPTPSAY 123 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + GE V +++ +G +LYT SG ILL++++GAIVL + D Sbjct: 124 PI----GEHCGHVTSATHLDTLGTLLYTHVPLLFIGSGLILLVALLGAIVLTVHTPGD 177 >gi|257852682|gb|ACV71353.1| NADH dehydrogenase subunit 6 [Rhizanthes lowii] Length = 176 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 F+V +NP++SV I F +GL L LG +F AMI VV++GA+ V FLF++MM I Sbjct: 2 FMVARAKNPVHSVLFSILVFRETSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFHI 61 Query: 80 DIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRLVFK--------GNN 130 I R S IG IL E+ + + + + L +K N Sbjct: 62 QIAEIHEEVLRYLPFSGLIGLILWWEMFFILDTIPLIKQKRKTTYLGYKVYAGKIISWTN 121 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 +E +G +LYT Y + +LL++MIGAIVL + RQD+ ++ Sbjct: 122 LETLGNLLYTYYFVWFLVPSILLLVAMIGAIVLTMHRTTHGVRQDLFRR 170 >gi|11467591|ref|NP_043737.1| NADH dehydrogenase, subunit 6 [Allomyces macrogynus] gi|1236421|gb|AAC49238.1| NADH dehydrogenase, subunit 6 [Allomyces macrogynus] Length = 204 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 1/73 (1%) Query: 8 FYLFSFMAIISSFLVVTV-RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYL S + IIS L + + +NPI SV L+F FVN A +F+L+G + I ++VYVGA+ Sbjct: 8 FYLLSGLGIISGVLTIIMGKNPINSVVYLVFCFVNCAAVFILMGISLLGFIYIIVYVGAI 67 Query: 67 IVFFLFIIMMLDI 79 + F+F+IMM+D+ Sbjct: 68 AILFIFVIMMMDL 80 >gi|309792511|ref|ZP_07686975.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oscillochloris trichoides DG6] gi|308225499|gb|EFO79263.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oscillochloris trichoides DG6] Length = 196 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 14/185 (7%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L S + I ++ +VVTVRN I++ LI +F A L+LLL AEF+A++ ++VYVG Sbjct: 6 QIIFGLLSALVIGAAMMVVTVRNVIHAALWLIASFFGVAALYLLLEAEFIAVVQVLVYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGF------LGSFFIGILAAELIVCASNFMVFSAE 118 A+ + LF IM+ + E K + LG F + L + + + Sbjct: 66 AISILILFAIMLTRSN-EGDRLLTKYWWASALIALGLFGVAFLPT---FTGTTWNMPQPT 121 Query: 119 GEL-SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDI 176 G + V G VE +G+ +++ EI+G +L +++IGAIV+ R +R + Sbjct: 122 GPAGTPEVLSG--VEELGRGFVSEFVLHFEIAGVLLTVALIGAIVIAFEERSRRRRVLTL 179 Query: 177 SKQLE 181 +++LE Sbjct: 180 AEELE 184 >gi|292492180|ref|YP_003527619.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus halophilus Nc4] gi|291580775|gb|ADE15232.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus halophilus Nc4] Length = 167 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 63/92 (68%), Gaps = 1/92 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +F+A++S+ +V+T NP++++ LI + ++ A +F LLGA F A + +++Y GA++ Sbjct: 5 FYIAAFVAVVSTAMVITRLNPVHALLYLIVSLLSVALIFFLLGAPFAAALEVLIYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 V F+F++MML++ E A ++ R +IG Sbjct: 65 VLFVFVVMMLNLGKE-AIAQENRWLNPQMWIG 95 >gi|268627911|gb|ACZ13378.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1d] Length = 78 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 56/76 (73%), Gaps = 1/76 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVY 59 Query: 63 VGAVIVFFLFIIMMLD 78 VGA+ + FLF+IM++ Sbjct: 60 VGAIAILFLFVIMLIQ 75 >gi|166368384|ref|YP_001660657.1| NADH dehydrogenase subunit J [Microcystis aeruginosa NIES-843] gi|166090757|dbj|BAG05465.1| NADH dehydrogenase subunit J [Microcystis aeruginosa NIES-843] Length = 198 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + I ++ VV + N +YS F L F++ +GL+LLL A+FVA +++Y Sbjct: 7 VQIVSFGILAALVIGTALGVVLLSNIVYSAFLLGGVFISISGLYLLLNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121 VGA+ V LF IM+++ + ++ K+ ++ ++ L V S ++ + Sbjct: 67 VGAINVLILFAIMLVNKQEDFSDIPKR--WIRQASTALVCVGLFVLLSTMVLITPWSIST 124 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + N + IGK ++ + P E++ +LL++M+GAI+L RRD+ Sbjct: 125 TSPAVVTNTLVEIGKHFFSDFLLPFELASVLLLMAMVGAIIL---ARRDL 171 >gi|15610290|ref|NP_217670.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Rv] gi|15842730|ref|NP_337767.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis CDC1551] gi|31794330|ref|NP_856823.1| NADH dehydrogenase subunit J [Mycobacterium bovis AF2122/97] gi|121639037|ref|YP_979261.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663009|ref|YP_001284532.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Ra] gi|148824348|ref|YP_001289102.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis F11] gi|215405152|ref|ZP_03417333.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 02_1987] gi|215413021|ref|ZP_03421722.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A] gi|215428610|ref|ZP_03426529.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T92] gi|215432113|ref|ZP_03430032.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054] gi|215447443|ref|ZP_03434195.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85] gi|218754933|ref|ZP_03533729.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis GM 1503] gi|224991529|ref|YP_002646218.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Tokyo 172] gi|253800188|ref|YP_003033189.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN 1435] gi|254365779|ref|ZP_04981824.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium tuberculosis str. Haarlem] gi|254552244|ref|ZP_05142691.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188195|ref|ZP_05765669.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis CPHL_A] gi|260202301|ref|ZP_05769792.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T46] gi|260206493|ref|ZP_05773984.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis K85] gi|289444719|ref|ZP_06434463.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T46] gi|289448834|ref|ZP_06438578.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis CPHL_A] gi|289555427|ref|ZP_06444637.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN 605] gi|289575866|ref|ZP_06456093.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis K85] gi|289746963|ref|ZP_06506341.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis 02_1987] gi|289751832|ref|ZP_06511210.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T92] gi|289755273|ref|ZP_06514651.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054] gi|289759284|ref|ZP_06518662.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85] gi|289763337|ref|ZP_06522715.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium tuberculosis GM 1503] gi|294995505|ref|ZP_06801196.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 210] gi|297635797|ref|ZP_06953577.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis KZN 4207] gi|297732794|ref|ZP_06961912.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis KZN R506] gi|298526628|ref|ZP_07014037.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A] gi|306777471|ref|ZP_07415808.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu001] gi|306782196|ref|ZP_07420533.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu002] gi|306786017|ref|ZP_07424339.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu003] gi|306790382|ref|ZP_07428704.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu004] gi|306794907|ref|ZP_07433209.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu005] gi|306799107|ref|ZP_07437409.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu006] gi|306804950|ref|ZP_07441618.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu008] gi|306809139|ref|ZP_07445807.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu007] gi|306969241|ref|ZP_07481902.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu009] gi|306973588|ref|ZP_07486249.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu010] gi|307085900|ref|ZP_07495013.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu012] gi|313660127|ref|ZP_07817007.1| NADH:ubiquinone oxidoreductase subunit J [Mycobacterium tuberculosis KZN V2475] gi|1781214|emb|CAB06285.1| PROBABLE NADH DEHYDROGENASE I (CHAIN J) NUOJ (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN J) [Mycobacterium tuberculosis H37Rv] gi|13883052|gb|AAK47581.1| NADH dehydrogenase I, J subunit [Mycobacterium tuberculosis CDC1551] gi|31619926|emb|CAD95270.1| PROBABLE NADH DEHYDROGENASE I (CHAIN J) NUOJ (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN J) [Mycobacterium bovis AF2122/97] gi|121494685|emb|CAL73166.1| Probable NADH dehydrogenase I (chain J) nuoJ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151292|gb|EBA43337.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium tuberculosis str. Haarlem] gi|148507161|gb|ABQ74970.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Ra] gi|148722875|gb|ABR07500.1| NADH dehydrogenase I chain J nuoJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium tuberculosis F11] gi|224774644|dbj|BAH27450.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Tokyo 172] gi|253321691|gb|ACT26294.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN 1435] gi|289417638|gb|EFD14878.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T46] gi|289421792|gb|EFD18993.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis CPHL_A] gi|289440059|gb|EFD22552.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN 605] gi|289540297|gb|EFD44875.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis K85] gi|289687491|gb|EFD54979.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis 02_1987] gi|289692419|gb|EFD59848.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T92] gi|289695860|gb|EFD63289.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054] gi|289710843|gb|EFD74859.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium tuberculosis GM 1503] gi|289714848|gb|EFD78860.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85] gi|298496422|gb|EFI31716.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A] gi|308214183|gb|EFO73582.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu001] gi|308324957|gb|EFP13808.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu002] gi|308329374|gb|EFP18225.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu003] gi|308333203|gb|EFP22054.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu004] gi|308336693|gb|EFP25544.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu005] gi|308340534|gb|EFP29385.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu006] gi|308344473|gb|EFP33324.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu007] gi|308348469|gb|EFP37320.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu008] gi|308353099|gb|EFP41950.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu009] gi|308357072|gb|EFP45923.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu010] gi|308364635|gb|EFP53486.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu012] gi|323718243|gb|EGB27423.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis CDC1551A] gi|328459925|gb|AEB05348.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN 4207] Length = 262 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 95/187 (50%), Gaps = 16/187 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ S +A++ + VV N +YS L + A ++ A F+ ++ +VVY Sbjct: 17 EAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF++M++ +D + RG +AA L ++ S G+++ Sbjct: 77 GAVMMLFLFVLMLIGVDSAESLKETLRGQR-------VAAVLTGVGFGVLLISTIGQVAT 129 Query: 124 LVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 F G NVE + +++++Y + E++ +L+ + +GA+VL HR +R+ Sbjct: 130 RGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLA--HRERFERRKT 187 Query: 177 SKQLESN 183 ++L Sbjct: 188 QRELSQE 194 >gi|153799806|gb|ABS50634.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] gi|153799808|gb|ABS50635.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] Length = 171 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 23/167 (13%) Query: 30 YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-----EVA 84 +SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I I EV Sbjct: 1 HSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVL 60 Query: 85 EPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 G +G F I +L + + + V++ + V N+E Sbjct: 61 RYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGK------VRSWTNLE 114 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 115 TLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRR 161 >gi|256380656|ref|YP_003104316.1| NADH dehydrogenase subunit J [Actinosynnema mirum DSM 43827] gi|255924959|gb|ACU40470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinosynnema mirum DSM 43827] Length = 277 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 89/176 (50%), Gaps = 8/176 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ +A+ + ++ RN ++S L+ ++ GL+++ A F+ + ++VY Sbjct: 23 EAAAFWVLGPLALAGALGMLFARNAVHSALWLVMTMLSLGGLYMVQQAPFLGFVQIIVYT 82 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GA+++ FLF++M++ D +EV R +R +G + A Sbjct: 83 GAIMMLFLFVLMLVGRDSSDSVVEVL--RGQRLAAAVLGLGFGGLVVGALARALTEVQPV 140 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKR 173 G + G NV NIG ++T Y +P E++ +L+ + +GA+VL + R+ K+ Sbjct: 141 GLVEANTTGGGNVANIGARIFTDYLFPFELTSALLITAAVGAMVLAFTSKIRETKK 196 >gi|327403953|ref|YP_004344791.1| NADH dehydrogenase subunit J [Fluviicola taffensis DSM 16823] gi|327319461|gb|AEA43953.1| NADH dehydrogenase subunit J [Fluviicola taffensis DSM 16823] Length = 170 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 99/172 (57%), Gaps = 15/172 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + I ++ +VV ++P+ SV L+ F + ++L+ A+F+A++ ++VY GA++ Sbjct: 7 FYILGGLTIGTALMVVLSKHPVRSVLYLVLTFFLISANYVLMNAQFIAIVNIIVYAGAIM 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-------GSFFIGILAAELIVCASNFMVFSAEGE 120 V FLF++M+L+++ E EP+ GS F+ ++AA + M+ A E Sbjct: 67 VLFLFVLMLLNLNKE-NEPKHSPMMTIGAAVAGGSLFLVVVAAMRDAILATPMI-DANSE 124 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 K VEN+G++L+T+Y P E+S + L +M+GA++L + ++ I Sbjct: 125 ------KVGLVENLGQILFTKYVLPFEVSSVLFLAAMVGAVLLAKKEKQTID 170 >gi|304398208|ref|ZP_07380082.1| NADH dehydrogenase (quinone) [Pantoea sp. aB] gi|308187596|ref|YP_003931727.1| NADH dehydrogenase I chain J [Pantoea vagans C9-1] gi|304354074|gb|EFM18447.1| NADH dehydrogenase (quinone) [Pantoea sp. aB] gi|308058106|gb|ADO10278.1| NADH dehydrogenase I chain J [Pantoea vagans C9-1] Length = 183 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 99/188 (52%), Gaps = 16/188 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + ++ AG+F +GA F + ++VY GA++ Sbjct: 5 FYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126 V F+F++MML++ + E +++ S +IG + + L++ + + +A + Sbjct: 65 VLFVFVVMMLNLGKQT-EKQEREWLSPSLWIGPGIVSLLLLVVMIYAILTANDQ----GI 119 Query: 127 KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 G + + +G L+ Y +E++ +LL ++ A I R++ ++ SN Sbjct: 120 DGTIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAF--------HIGREERQGEVLSNR 171 Query: 185 DNSIVMVK 192 + VK Sbjct: 172 NADAAQVK 179 >gi|326902622|gb|EGE49555.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis W-148] Length = 262 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 95/187 (50%), Gaps = 16/187 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ S +A++ + VV N +YS L + A ++ A F+ ++ +VVY Sbjct: 17 EAVMFWVLSALALLGAVGVVLAINAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF++M++ +D + RG +AA L ++ S G+++ Sbjct: 77 GAVMMLFLFVLMLIGVDSAESLKETLRGQR-------VAAVLTGVGFGVLLISTIGQVAT 129 Query: 124 LVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 F G NVE + +++++Y + E++ +L+ + +GA+VL HR +R+ Sbjct: 130 RGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLA--HRERFERRKT 187 Query: 177 SKQLESN 183 ++L Sbjct: 188 QRELSQE 194 >gi|157371537|ref|YP_001479526.1| NADH dehydrogenase subunit J [Serratia proteamaculans 568] gi|157323301|gb|ABV42398.1| NADH dehydrogenase (quinone) [Serratia proteamaculans 568] Length = 186 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 102/192 (53%), Gaps = 18/192 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL F+A+I++ V++ NP++++ LI + + + +F LGA F A + ++VY GA++ Sbjct: 5 FYLAGFIAVIATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFI--GILA-AELIVCASNFMVFSAEGELSR 123 V F+F++MML++ V + ++R +L S +I GIL+ A L+V S +G Sbjct: 65 VLFVFVVMMLNLGNAVQQ--QERDWLKPSVWIGPGILSLALLVVLIVAIRSVSDQGISGE 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 +V + + +G L+ Y +E++ +LL ++ A I R+ ++ SN Sbjct: 123 MV----DAKAVGISLFGPYVLAVELASMLLLAGLVVAF--------HIGREHKPGEVLSN 170 Query: 184 PDNSIVMVKVKS 195 M + KS Sbjct: 171 APAGSEMARRKS 182 >gi|254457280|ref|ZP_05070708.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Campylobacterales bacterium GD 1] gi|207086072|gb|EDZ63356.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Campylobacterales bacterium GD 1] Length = 191 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 19/188 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLF+F+ I ++ VT +Y++ +L + + F +LGA+F+ + +VVY Sbjct: 3 EAIAFYLFAFLTIAMFYITVTTSQALYALTALAAGMIFISAFFFILGADFLGAVQIVVYS 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--GE- 120 GAV+ + F +M D EV E + + + ++A L+V ++F+A G+ Sbjct: 63 GAVMALYAFGMMFFDTTREVKEKNGNKYLVTG--LATISAILVV-----LIFAAPIVGDN 115 Query: 121 ---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 L + N + IG VL+T+Y P E++ +LL++M+ IVL K+ D+S Sbjct: 116 ITALYPVTEGAGNTQEIGIVLFTKYLVPFELAAVMLLVAMVSGIVLAG------KKMDLS 169 Query: 178 KQLESNPD 185 L S+ + Sbjct: 170 LTLMSDAE 177 >gi|157816261|ref|YP_001492832.1| NADH dehydrogenase subunit 6 [Tilletia indica] gi|187373139|ref|YP_001876482.1| ND6 [Tilletia walkeri] gi|115361454|gb|ABI95820.1| NADH dehydrogenase subunit 6 [Tilletia indica] gi|144925994|gb|ABP03928.1| ND6 [Tilletia walkeri] Length = 294 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 50/79 (63%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + AI S LV+T +NP+ SV LI FVN AG +LLG F+ + L+VY Sbjct: 1 MNNFLLDFLAIRAIFSGILVITSKNPVISVLFLISVFVNIAGYLILLGVGFIGISYLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI 81 VGA+ + FLF++MML++ I Sbjct: 61 VGAIAILFLFVVMMLNLQI 79 >gi|329296026|ref|ZP_08253362.1| NADH:ubiquinone oxidoreductase subunit J [Plautia stali symbiont] Length = 183 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 95/179 (53%), Gaps = 16/179 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + ++ AG+F +GA F + ++VY GA++ Sbjct: 5 FYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ + + +++ S +IG + L+V M + +G + Sbjct: 65 VLFVFVVMMLNLG-KTQQDQEREWLKPSLWIGPGIVSLLLLVVMIYAIMTATDQGIDGTV 123 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + + + +G L+ Y +E++ +LL ++ A I R+D ++ SN Sbjct: 124 I----DAKAVGISLFGPYVLAVELASMLLLAGLVVAF--------HIGREDRQGEVLSN 170 >gi|159030036|emb|CAO90417.1| ndhG [Microcystis aeruginosa PCC 7806] Length = 198 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 95/178 (53%), Gaps = 22/178 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + I ++ VV + N +YS F L F++ +GL+LLL A+FVA +++Y Sbjct: 7 VQIVSFGILAALVIGTALGVVLLSNIVYSAFLLGGVFISISGLYLLLNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VGA+ V LF IM+++ + ++ K+ R A+ +VC F++ S Sbjct: 67 VGAINVLILFAIMLVNKQEDFSDIPKRWIRQ----------ASTALVCVGLFVLLSTMVL 116 Query: 121 LSRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 ++ N + IGK ++ + P E++ +LL++M+GAI+L RRD+ Sbjct: 117 ITPWSISSTSPAVVTNTLVEIGKHFFSDFLLPFELASVLLLMAMVGAIIL---ARRDL 171 >gi|159036136|ref|YP_001535389.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora arenicola CNS-205] gi|157914971|gb|ABV96398.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora arenicola CNS-205] Length = 200 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 14/187 (7%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S LVV R+ + + L+ AG++L+L AE VA + +++YVGAV+V LF +M+ Sbjct: 18 SGALVVATRHLVRAGLYLVLCLAAVAGMYLVLTAELVAWVQVLIYVGAVVVLLLFAVMLT 77 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKV 137 I + + G+ + G L + +S + + E IG+ Sbjct: 78 RAPIGASTDLDRPGWPAALIGGGTGLGLAALLVDAYRWS-----TVQLPTAGTAERIGEQ 132 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD------NSIVMV 191 ++ + P E+ +LL +++GAI+L R DI R + + + P ++ V Sbjct: 133 VFQSWVLPFEVLSMLLLAALVGAIIL---SRPDIGRPPVDRDGQGRPGRAGDAADATGGV 189 Query: 192 KVKSGKG 198 K G+G Sbjct: 190 DGKPGEG 196 >gi|111220508|ref|YP_711302.1| NADH dehydrogenase subunit J [Frankia alni ACN14a] gi|111148040|emb|CAJ59706.1| NADH dehydrogenase (quinone) [Frankia alni ACN14a] Length = 358 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 97/173 (56%), Gaps = 13/173 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ + +A++++ +V VR+ ++ L+ A +L+ A F+ + ++VY Sbjct: 20 EATVFWILAPIAVLAALGMVFVRSAVHCALLLVANLFCVAVFYLVQQAPFLGFVQIIVYA 79 Query: 64 GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-EG 119 GA++V FLF++M++ +D V R +R LG+ G+ A L+V F + SA +G Sbjct: 80 GAIMVLFLFVLMLVGVDSSDSLVETIRGQR--LGAAIFGLGFAGLLV----FPIGSAIDG 133 Query: 120 ELSR---LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 E ++ +G NV+ IG++L++ Y + E +L+++ IG +VL R R Sbjct: 134 ETAKGLDTPNEGGNVQAIGRLLFSDYVFVFEAVSALLVVAAIGTMVLGHRERE 186 >gi|251789022|ref|YP_003003743.1| NADH dehydrogenase (quinone) [Dickeya zeae Ech1591] gi|247537643|gb|ACT06264.1| NADH dehydrogenase (quinone) [Dickeya zeae Ech1591] Length = 183 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 95/185 (51%), Gaps = 17/185 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY GA++ Sbjct: 5 FYATAIIAVLATLRVITHTNPVHALLYLIVSLLAVAGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPR----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 V F+F++MML++ V E K +LG G+L+ L+ ++ + ++ Sbjct: 65 VLFVFVVMMLNLGNSVDEQEKLWLKPTVWLGP---GVLSLVLLAIIVKGIISVTDQNIA- 120 Query: 124 LVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISK 178 GN + + +G L+ Y +E++ +LL ++ A + +R K QD K Sbjct: 121 ----GNMIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGELIAKDQDADK 176 Query: 179 QLESN 183 ++ Sbjct: 177 KITEE 181 >gi|229490769|ref|ZP_04384604.1| NADH-quinone oxidoreductase, j subunit nuoj [Rhodococcus erythropolis SK121] gi|229322159|gb|EEN87945.1| NADH-quinone oxidoreductase, j subunit nuoj [Rhodococcus erythropolis SK121] Length = 265 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 97/194 (50%), Gaps = 14/194 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+IS+ VV +YS L + A +++ GA F+ ++ +VVY Sbjct: 22 EAVQFWILGTLAVISALGVVAAPKAVYSALFLAMTMIILAVFYIVQGALFLGVVQIVVYT 81 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF++M++ +D + RG S + I ++ S G Sbjct: 82 GAVMMLFLFVLMLVGVDSSDSLVETLRGQRVSAIV-IGVGFGLLLIGGLGNASISGFTGF 140 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----KRQDISKQ 179 N++ + +++ +Y + E++G +L+ + +GA +ML HR I ++++S+Q Sbjct: 141 TGLDQGNIDALADLIFIRYVWAFELTGALLITATLGA--MMLAHREKIGATLSQRELSQQ 198 Query: 180 L-------ESNPDN 186 ESNPD Sbjct: 199 RFAYLGSDESNPDK 212 >gi|18640458|ref|NP_570147.1| NADH-ubiquinone oxidoreductase chain 6 [Hypocrea jecorina] gi|18496639|gb|AAL74172.1|AF447590_9 NADH-ubiquinone oxidoreductase chain 6 [Hypocrea jecorina] Length = 256 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 44/213 (20%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S +A++ V+ +NPI S+ SLI F + + +L G F+ L+VY+GAV + Sbjct: 28 ILSVIALLFGIAVIVNKNPIASLLSLIGLFASISVYLILSGLTFIGFSYLIVYIGAVSIL 87 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL---AAELIVCASNFMVFSAEGELSRLVF 126 FLFI+M+++I + + FI IL A ++ S ++ S +LS +++ Sbjct: 88 FLFILMLINIRTSELQSNNINSIPLALFITILLNYALFQLLPYSIAIINSYNNKLSNIIY 147 Query: 127 ---------------------------------KGN-----NVENIGKVLYTQYAYPLEI 148 GN ++ IG +LYT Y L I Sbjct: 148 YLPTSKYNDIITHISKNLDINTANVMFVTSNSWDGNMAETSHISTIGNILYTSYNMWLFI 207 Query: 149 SGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + FILLL+M+GAIV+ ++ R+ + IS +E Sbjct: 208 ASFILLLAMVGAIVITIKQERN---RGISSMVE 237 >gi|189220226|ref|YP_001940866.1| NADH dehydrogenase subunit J [Methylacidiphilum infernorum V4] gi|189187084|gb|ACD84269.1| NADH dehydrogenase subunit J [Methylacidiphilum infernorum V4] Length = 135 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 5/139 (3%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 +L+ ++ AGLF+LLGA F+A + ++VY GAV+V FLFIIM+LD+ E + G L Sbjct: 2 NLVLMILSIAGLFVLLGAYFLAAVQVLVYAGAVMVLFLFIIMLLDLKAEEQATMRPLGML 61 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 G F + +L A M S E L G ++ +G++L+ Y+ E+ G +L Sbjct: 62 GGFLLVLLFGVGFSLAVKAMDSSLSKEQKALGVGG--IKALGELLFANYSLAFEVVGLLL 119 Query: 154 LLSMIGAIVLMLRHRRDIK 172 L+SM+G I+L ++D++ Sbjct: 120 LISMVGVIIL---SKKDLE 135 >gi|238062220|ref|ZP_04606929.1| NADH dehydrogenase subunit J [Micromonospora sp. ATCC 39149] gi|237884031|gb|EEP72859.1| NADH dehydrogenase subunit J [Micromonospora sp. ATCC 39149] Length = 256 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 94/190 (49%), Gaps = 24/190 (12%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++ + +A++ + ++ RN ++S L+ + ++L F+ M+ ++VY Sbjct: 17 EEVTFWILAPLALLGAIGMIAARNAVHSALWLVLTMLCLGVFYVLQAGPFIGMVQIIVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIE---VAEPRKKR--------GFLGSFFIGILAAELIVCASNF 112 GA+++ FLF++M++ D + R +R GF G G+ V A Sbjct: 77 GAIMMLFLFVLMLVGRDASDSLIETLRGQRIAAVVLGLGFAGLVGGGLYRGLGGVSAVGL 136 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +AEG NV+ I ++L+T+Y + E++ +L+ + +GA+VL RR Sbjct: 137 EQANAEG----------NVQGIARLLFTKYVFAFELTSALLITAAVGAMVLAHIERR--- 183 Query: 173 RQDISKQLES 182 R+D Q+ + Sbjct: 184 REDKMDQIAT 193 >gi|11466464|ref|NP_038167.1| NADH dehydrogenase subunit 6 [Chrysodidymus synuroideus] gi|7110461|gb|AAF36933.1|AF222718_7 NADH dehydrogenase subunit 6 [Chrysodidymus synuroideus] Length = 184 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 8/179 (4%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F+ + I +S V NP++S+ L+ F++A+G+ GA+F+ ++ +++YVGA+ + F Sbjct: 5 FNLILIFASLFVFLSENPVHSILFLVLVFLSASGICFYFGADFLGLLFVIIYVGAIAILF 64 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSF-FIGILA-AELIVCASNFMVFSAEGELSRLVFKG 128 +FIIMML+I I+ K + F FIG LA +L + S + F Sbjct: 65 IFIIMMLNIKIK----NKALNYFYFFVFIGFLAFLQLYLGLSKCFSNFFFFNSNFFFFDS 120 Query: 129 NNVE-NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186 ++E IG+ LY + + ISG ILL++MIGAIVL L + ++ + +Q + DN Sbjct: 121 LSIEFFIGQTLYNYFTFCFLISGIILLIAMIGAIVLTLNYTSKHFKKFLFRQ-QVRTDN 178 >gi|300114501|ref|YP_003761076.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Nitrosococcus watsonii C-113] gi|299540438|gb|ADJ28755.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus watsonii C-113] Length = 167 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 91/160 (56%), Gaps = 16/160 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++S+ +V+T N ++++ LI + + A +F LLGA F A + +++Y GA++ Sbjct: 5 FYIAAIIAVVSTIMVITRLNAVHALLYLIVSLLAVALIFFLLGAPFAAALEVIIYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG------ILAAELI-VCASNFMVFSAEGE 120 V F+F+IMML++ E + ++ R F ++G +L EL+ + A++ S+ Sbjct: 65 VLFVFVIMMLNLGKE-SVAQENRWFTPYLWLGPGILSFVLLIELVYLLATDSSALSSAEM 123 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 ++ + +G L+ Y +E++ +LL ++GA Sbjct: 124 ITP--------QQVGVALFGPYLLAVELAAMLLLTGLVGA 155 >gi|307721741|ref|YP_003892881.1| NADH dehydrogenase subunit J [Sulfurimonas autotrophica DSM 16294] gi|306979834|gb|ADN09869.1| NADH dehydrogenase subunit J [Sulfurimonas autotrophica DSM 16294] Length = 188 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 100/188 (53%), Gaps = 19/188 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLF+F+ I ++ VT + +Y++ +L + + F +LGA+F+ + ++VY Sbjct: 3 EAVAFYLFAFLTIAMFYITVTTKQALYALTALAAGMIFISAFFFILGADFLGAVQIIVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+ + F +M D EV E + + + + LAA L+V ++F+A Sbjct: 63 GAVMALYAFGMMFFDTTREVKEKQGNKYIIVG--LSTLAAVLVV-----IIFAAPMVSEN 115 Query: 124 LV-----FKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 +V G N + +G VL+T+Y P E++ +LL++M+ IVL K+ D+S Sbjct: 116 IVALYPAIDGVGNTQEVGLVLFTKYLIPFEVAAIMLLVAMVAGIVLAG------KKMDLS 169 Query: 178 KQLESNPD 185 L ++ + Sbjct: 170 ITLINDAE 177 >gi|311278763|ref|YP_003940994.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Enterobacter cloacae SCF1] gi|308747958|gb|ADO47710.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Enterobacter cloacae SCF1] Length = 184 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 101/194 (52%), Gaps = 22/194 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + AG+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPR---KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 V F+F++MML++ E+ + R K + ++G GIL+ L+ +V+ G L+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQWLKPQVWIGP---GILSVVLLAV----IVYGIIG-LND 116 Query: 124 LVFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 GN + + +G L+ Y +E++ +LL ++ A + R++ ++ Sbjct: 117 QGIDGNAIGAKEVGIALFGPYVLAVELASMLLLAGLVVAF--------HLGREERQGEVL 168 Query: 182 SNPDNSIVMVKVKS 195 SN N K + Sbjct: 169 SNRSNDSAKRKTEE 182 >gi|302536177|ref|ZP_07288519.1| NADH dehydrogenase subunit J [Streptomyces sp. C] gi|302445072|gb|EFL16888.1| NADH dehydrogenase subunit J [Streptomyces sp. C] Length = 270 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 93/186 (50%), Gaps = 20/186 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + + ++ ++S L + A +L GA F+ ++ +VVY Sbjct: 15 EAVQFWVLGTVAVIGALCTILMKKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQVVVYT 74 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGEL 121 GA+++ FLF++M++ + A K G ++ L C F ++ + G Sbjct: 75 GAIMMLFLFVVMLVGV---TAADSLKETIKGQRWLAAL------CGLGFGILLIAGIGNA 125 Query: 122 SRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 F G +VE + ++++T+Y + EI+G +L+ + +GA+VL HR +R Sbjct: 126 GLTHFNGLGKVNSAGHVEGLAELIFTRYIFAFEITGALLITAAVGAMVLT--HRERTERA 183 Query: 175 DISKQL 180 ++L Sbjct: 184 ATQREL 189 >gi|323702658|ref|ZP_08114319.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfotomaculum nigrificans DSM 574] gi|323532321|gb|EGB22199.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfotomaculum nigrificans DSM 574] Length = 172 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 8/169 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L S + + S+ LVVT++N ++SV LI F+ AG+FL+L A+FVA + ++VY GAV Sbjct: 10 FVLLSGVVLGSALLVVTLKNLVHSVLWLIVTFIGTAGVFLMLEADFVAAVQVLVYAGAVC 69 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAEL-IVCASNFMVFSAEGELSRLV 125 + +F +M++ ++ + P R + + +G+L + ++ A V S G + Sbjct: 70 IMVVFGVMLVQRNEMGNSNPFNYRFRIAAPVVGVLFIIIGLLTAKAQWVTSGAGVPKK-- 127 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V+ + +L + P E++ +L +++ GA+VL+ R R Sbjct: 128 ----TVQALAPILLGDFMIPFEVAAILLTVALTGALVLVKEVRAHGDRS 172 >gi|118617955|ref|YP_906287.1| NADH dehydrogenase subunit J [Mycobacterium ulcerans Agy99] gi|183981489|ref|YP_001849780.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium marinum M] gi|118570065|gb|ABL04816.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium ulcerans Agy99] gi|183174815|gb|ACC39925.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium marinum M] Length = 262 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 95/181 (52%), Gaps = 4/181 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A++ + VV N +YS L + A +++ A F+ ++ +VVY Sbjct: 21 EAVTFWILGALALVGALGVVMAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVVYT 80 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV++ FLF++M++ +D + RG + + IG+ L++ A + L+ Sbjct: 81 GAVMMLFLFVLMLIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFAGLT 140 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G NVE + +++++Y + E++ +L+ + IGA+VL HR +R+ ++L Sbjct: 141 AANANG-NVEGLAALIFSRYLWAFELTSALLITAAIGAMVLA--HRERFERRKSQRELSQ 197 Query: 183 N 183 Sbjct: 198 E 198 >gi|110598461|ref|ZP_01386732.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium ferrooxidans DSM 13031] gi|110339911|gb|EAT58415.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium ferrooxidans DSM 13031] Length = 173 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 81/147 (55%), Gaps = 5/147 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FY+F+ + ++S+ VV RN IYS F+L+F F A L++ L A+F+A+ +VVYVG Sbjct: 8 TVIFYIFAAITVLSAAFVVFTRNVIYSAFALLFTFFGVAALYVFLSADFIAVTQVVVYVG 67 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SR 123 ++V LF +M + I A+P+ + G L ++ A + ++ + S Sbjct: 68 GILVLLLFGVMFTN-SIMNAKPKSD---VLHIIPGTLLLLAMIGALLYTFYTTHSWMPSE 123 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISG 150 + +G+ VE IG ++Y P E++ Sbjct: 124 TMLQGSIVERIGFETMSRYVLPFEMAS 150 >gi|226365389|ref|YP_002783172.1| NADH dehydrogenase subunit J [Rhodococcus opacus B4] gi|226243879|dbj|BAH54227.1| NADH-quinone oxidoreductase chain J [Rhodococcus opacus B4] Length = 272 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 95/184 (51%), Gaps = 10/184 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++ + +A+I + VV+ +YS L + A ++ GA F+ ++ +VVY Sbjct: 22 EGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIAQGAPFLGVVQIVVYT 81 Query: 64 GAVIVFFLFIIMMLDIDIE---VAEPRKKR-GFLGSFFIGILAAELIVCASNFMVFSAEG 119 GAV++ FLF++M++ +D V R +R + + L ++ F+ Sbjct: 82 GAVMMLFLFVLMLIGVDSSESLVENLRGQRVAAIAAGLGFGLLLIGGFGRASVSAFTGLD 141 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + G NV+ + ++++ +Y + E++G +L+ + IGA+VL HR +R+ ++ Sbjct: 142 QAN----AGGNVQGLAELVFVRYVWAFELTGALLITATIGAMVLA--HRERFERRKDQRE 195 Query: 180 LESN 183 L + Sbjct: 196 LSQD 199 >gi|312129478|ref|YP_003996818.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leadbetterella byssophila DSM 17132] gi|311906024|gb|ADQ16465.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leadbetterella byssophila DSM 17132] Length = 159 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 11/160 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F+LF + I V+ +N +Y+ + L+ F+ AG+F+ GAEF+A +++Y Sbjct: 1 MIDLVFWLFCLLTIGGGVYVLLSKNVLYAAYGLLSTFLGVAGMFVFAGAEFMAAAQIMIY 60 Query: 63 VGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VG +++ +F IM+ + V + + RG L + +LAA IV + S GE Sbjct: 61 VGGIMILLIFGIMLSTRRKYLVVEDAAQNRGILVAV---LLAAVWIVLIIKLRLLS--GE 115 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 L+ +++ +G L T + LE+ G ILL++++GA Sbjct: 116 PVELI----SIKKVGLALMTSHVLILELVGVILLMALVGA 151 >gi|289474452|gb|ADC97839.1| NADH dehydrogenase subunit 6 [Muricea purpurea] Length = 155 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + I+ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLL 114 Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 ++MIGAI+L + K L S D Sbjct: 115 VAMIGAILLAKQPNSPSLYNSHGKSLRSRQD 145 >gi|256396783|ref|YP_003118347.1| NADH dehydrogenase subunit J [Catenulispora acidiphila DSM 44928] gi|256363009|gb|ACU76506.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora acidiphila DSM 44928] Length = 287 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/191 (22%), Positives = 99/191 (51%), Gaps = 18/191 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ FY+ +A++ + V + ++S SL + A +L GA F+ ++ +VVY Sbjct: 25 EAFQFYVLGAVALLGALGTVFSKKAVHSALSLAMTMICLAMFYLAQGAYFLGVVQIVVYT 84 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCA---SNFMVF 115 GA+++ FLF++M++ + +E + ++K L + + LI+ A + F Sbjct: 85 GAIMMLFLFVLMLVGVSSADSLVETIKGQRKLAVLAAIAFAV----LIMVALGRARLGTF 140 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIK 172 + G + G NV+N+ +++++Y + E++ +L+ + +GA+V+ R R R + Sbjct: 141 AGSGPAN---AGGGNVKNLADLIFSKYFWAFEVTSALLITAAVGAMVMTHRERLVARKSQ 197 Query: 173 RQDISKQLESN 183 R+ + ++ + Sbjct: 198 RELVEDRVRTG 208 >gi|268627916|gb|ACZ13382.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D1a] gi|268627918|gb|ACZ13384.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D2d] gi|268627919|gb|ACZ13385.1| NADH dehydrogenase subunit 6 [Lepidisis sp. D2e] Length = 74 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/75 (46%), Positives = 56/75 (74%), Gaps = 1/75 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVY 59 Query: 63 VGAVIVFFLFIIMML 77 VGA+ + FLF+IM++ Sbjct: 60 VGAIAILFLFVIMLI 74 >gi|270262806|ref|ZP_06191077.1| NADH dehydrogenase subunit J [Serratia odorifera 4Rx13] gi|270043490|gb|EFA16583.1| NADH dehydrogenase subunit J [Serratia odorifera 4Rx13] Length = 186 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 100/192 (52%), Gaps = 18/192 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +AI+++ V++ NP++++ LI + + + +F LGA F A + ++VY GA++ Sbjct: 5 FYLAGLIAIVATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIG---ILAAELIVCASNFMVFSAEGELSR 123 V F+F++MML++ V + ++R +L S +IG + A L+V S +G Sbjct: 65 VLFVFVVMMLNLGNAVQQ--QERDWLKPSVWIGPGLMSLALLVVLIVAIRSLSDQGISGE 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 +V + + +G L+ Y +E++ +LL ++ A I R+ ++ SN Sbjct: 123 MV----DAKAVGISLFGPYVLAVELASMLLLAGLVVAF--------HIGREHKPGEVLSN 170 Query: 184 PDNSIVMVKVKS 195 S M + KS Sbjct: 171 APASSEMARRKS 182 >gi|78221390|ref|YP_383137.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter metallireducens GS-15] gi|78192645|gb|ABB30412.1| NADH dehydrogenase subunit J [Geobacter metallireducens GS-15] Length = 161 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 10/164 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+S FY+ + + + + +T ++ ++++ L+ +F A +F LLGA VA+ +++Y Sbjct: 1 MESALFYILAVVTVTGTAFAITEKHAVHAIVYLVTSFFALAVIFFLLGAPVVAIFEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEG 119 GA++V FLF+IMMLD+ E A R + + +G LA+ L + S A G Sbjct: 61 AGAIMVLFLFVIMMLDLGHPERARLPGIREWWPALALGAVTLASALALVVSRAPAIPAPG 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 K V+ L+ +Y +E+ LL +++GA+ L Sbjct: 121 -------KAIGVKEFALALFGKYGVAVEVISMQLLFALVGALYL 157 >gi|108798541|ref|YP_638738.1| NADH dehydrogenase subunit J [Mycobacterium sp. MCS] gi|119867641|ref|YP_937593.1| NADH dehydrogenase subunit J [Mycobacterium sp. KMS] gi|126434139|ref|YP_001069830.1| NADH dehydrogenase subunit J [Mycobacterium sp. JLS] gi|108768960|gb|ABG07682.1| NADH dehydrogenase subunit J [Mycobacterium sp. MCS] gi|119693730|gb|ABL90803.1| NADH dehydrogenase subunit J [Mycobacterium sp. KMS] gi|126233939|gb|ABN97339.1| NADH dehydrogenase subunit J [Mycobacterium sp. JLS] Length = 249 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 94/184 (51%), Gaps = 23/184 (12%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + VV+ +YS L + A L++ A F+ ++ +VVY Sbjct: 15 EAVVFWILGGIALIGALGVVSAPKAVYSAIFLATTMIALAVLYIAQEALFLGVVQIVVYT 74 Query: 64 GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GAV++ FLF++M++ +D V R +R +AA + ++ + G Sbjct: 75 GAVMMLFLFVLMLVGVDNSESLVETIRGQR----------VAAIAVGVGFGVLLIAGIGT 124 Query: 121 LSRLVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RD 170 +S F G NVE + +++T+Y + E++G +L+ + +GA+VL R R R Sbjct: 125 VSTSGFTGLPDANSSGNVEGLAALIFTRYLWAFELTGALLITAALGAMVLAHRERFEHRK 184 Query: 171 IKRQ 174 +R+ Sbjct: 185 TQRE 188 >gi|258514496|ref|YP_003190718.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfotomaculum acetoxidans DSM 771] gi|257778201|gb|ACV62095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfotomaculum acetoxidans DSM 771] Length = 169 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 21/174 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + + + S+ LVV +N ++SV L +F+ AG +L+L A F+AM+ ++VY GAV Sbjct: 10 FYILAAVTVGSAVLVVAFKNLVHSVLVLAISFLGVAGFYLMLNASFIAMVQILVYAGAVC 69 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGS-------FFIGILAAELIVCASNFMVFSAEGE 120 + +F IM+ ++ G GS F G + A LI + V + E + Sbjct: 70 IMVVFGIML----------TQQGGMSGSNGFNKQIFASGGVVALLIAVIAYLGVNAGEWQ 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 +S + V NI ++ ++Y P E++ +LL+++IGA+VL +++K + Sbjct: 120 ISAKQVPHDTVGNIAVLMLSKYMIPFEVAALLLLVALIGAVVL----AKEVKAK 169 >gi|221633758|ref|YP_002522984.1| NADH dehydrogenase i subunit j [Thermomicrobium roseum DSM 5159] gi|221155857|gb|ACM04984.1| nadh dehydrogenase i chain j [Thermomicrobium roseum DSM 5159] Length = 241 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 4/146 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F L + ++++ + VV RNP++S L+ +F+N A ++L+ AEF+A++ ++ Sbjct: 1 MSLEVAVFSLLALVSVLGALGVVLARNPVHSAIGLVLSFLNVAAIYLVARAEFLAVVQVI 60 Query: 61 VYVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 VY GA+IV +F+ M++ D E R R G L AE+ V A Sbjct: 61 VYAGAIIVLVVFVTMLVHPDDLPEFHGRRPLRLVTGLVLGAALLAEVAAAVLARGVRGAP 120 Query: 119 GELSRLVFK--GNNVENIGKVLYTQY 142 G + G N +G+VLY Y Sbjct: 121 GPWTDEAVAAVGGNTRALGQVLYVDY 146 >gi|75294069|sp|Q6YXQ0|NU6C_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|34494824|dbj|BAC85091.1| NADH dehydrogenase ND6 subunit [Physcomitrella patens subsp. patens] Length = 200 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 22/198 (11%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F++ I+ S VV + N +YS F L F + L+ L A+FVA +++Y Sbjct: 10 LQEIIFFILEIGVILGSLGVVLLSNIVYSAFFLGLVFFCISLLYFALNADFVAAAQILIY 69 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF--------------LGSFFIGILAAELIVC 108 VGAV V +F +M+++ +P + F L SFF+ ++ L Sbjct: 70 VGAVNVLIVFAVMLIN------KPESLKIFPVWTVGDKITLAICLTSFFL-LVNIILNTS 122 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 SN V + F NV+ IG +L TQY P E+ +LL+++IGAIV+ R Sbjct: 123 WSNITVITESKGFLESNFT-QNVQRIGSLLLTQYLLPFELLSIVLLVALIGAIVIARREN 181 Query: 169 RDIKRQDISKQLESNPDN 186 + Q++ +P Sbjct: 182 LIETNKKKVLQIKKSPTT 199 >gi|18652802|gb|AAL76100.1| NADH dehydrogenase subunit VI [Hypocrea pseudokoningii] Length = 250 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 44/213 (20%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S +A++ V+ +NPI S+ SLI F + + +L G F+ L+VY+GAV + Sbjct: 22 ILSVIALLFGIAVIVNKNPIASLLSLIGLFASISVYLILSGLTFIGFSYLIVYIGAVSIL 81 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL---AAELIVCASNFMVFSAEGELSRLVF 126 FLFI+M+++I + + FI IL A ++ S ++ S +LS +++ Sbjct: 82 FLFILMLINIRTSELQSNNINSIPLALFITILLNYALFQLLPYSIAIINSYNNKLSNIIY 141 Query: 127 ---------------------------------KGN-----NVENIGKVLYTQYAYPLEI 148 GN ++ IG +LYT Y L I Sbjct: 142 YLPTSKYNDIITHISKNLDINTANVMFVTSNSWDGNMAETSHISTIGNILYTSYNMWLFI 201 Query: 149 SGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + FILLL+M+GAI++ ++ R+ + IS +E Sbjct: 202 ASFILLLAMVGAIIITIKQERN---RGISSMVE 231 >gi|126021018|ref|NP_904241.2| NADH dehydrogenase subunit 6 [Physcomitrella patens subsp. patens] Length = 197 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 22/198 (11%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F++ I+ S VV + N +YS F L F + L+ L A+FVA +++Y Sbjct: 7 LQEIIFFILEIGVILGSLGVVLLSNIVYSAFFLGLVFFCISLLYFALNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF--------------LGSFFIGILAAELIVC 108 VGAV V +F +M+++ +P + F L SFF+ ++ L Sbjct: 67 VGAVNVLIVFAVMLIN------KPESLKIFPVWTVGDKITLAICLTSFFL-LVNIILNTS 119 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 SN V + F NV+ IG +L TQY P E+ +LL+++IGAIV+ R Sbjct: 120 WSNITVITESKGFLESNFT-QNVQRIGSLLLTQYLLPFELLSIVLLVALIGAIVIARREN 178 Query: 169 RDIKRQDISKQLESNPDN 186 + Q++ +P Sbjct: 179 LIETNKKKVLQIKKSPTT 196 >gi|154175162|ref|YP_001407453.1| NADH dehydrogenase subunit J [Campylobacter curvus 525.92] gi|112803258|gb|EAU00602.1| transcriptional regulator, LuxR family [Campylobacter curvus 525.92] Length = 177 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 97/179 (54%), Gaps = 15/179 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLFS +++ + V +N ++++ +L + LF LLGAEF+ ++ ++VY Sbjct: 3 EAIAFYLFSALSLGCFGVSVFSKNALHAMSALAGGMIFICALFFLLGAEFLGVVQIIVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAE----PRKKRGFLGSFFIGILAAELIVCASNFMV---FS 116 GAV+V + F +M DI + E K+ + S FI +L L++ S+ ++ + Sbjct: 63 GAVMVLYAFSMMFFDISRDANESYSLASKRLIYTLSVFIALL---LVIVFSSPVIGQNLA 119 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 A+ L N+E IG +L+ +Y E++ +LL++M+ IVL + + D K Q Sbjct: 120 AQQSAQEL----GNIELIGLMLFGKYLIAFELTAIMLLVAMVAGIVL-VHKKMDAKSQT 173 >gi|39998522|ref|NP_954473.1| NADH dehydrogenase I subunit J [Geobacter sulfurreducens PCA] gi|39985469|gb|AAR36823.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens PCA] gi|298507466|gb|ADI86189.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens KN400] Length = 163 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 89/168 (52%), Gaps = 6/168 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+ + + +I++ L +T ++ ++++ L+ +F A +F LGA VA+ +++Y Sbjct: 1 MEQALFYILAAVTVIATVLAITEKHAVHAIVYLVTSFFALAVIFFTLGAPVVAVFEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++V FLF+IMMLD+ P R +R + ++ LA + AS + + + Sbjct: 61 AGAIMVLFLFVIMMLDLG----HPERARRPGIRDWWPA-LALGAVTLASALTLLISRAQA 115 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + V+ L+ +Y +E+ LL +++GA+ L R R Sbjct: 116 ASAAGRAIGVKEFALTLFGKYGVAVEVISMQLLFALVGALYLAKRRER 163 >gi|222054370|ref|YP_002536732.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. FRC-32] gi|221563659|gb|ACM19631.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. FRC-32] Length = 161 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 90/171 (52%), Gaps = 14/171 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+ + + ++++ +T ++ ++++ L+ +F A +F LL A VA+ +++Y Sbjct: 1 MEQALFYILAAVTVVATIFAITEKHAVHAIVYLVTSFFALAVIFFLLSAPLVAVFEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118 GA++V F+F+IMMLD+ ++ PR + GI+ A I V A V Sbjct: 61 AGAIMVLFMFVIMMLDLSHPEKIGLPRFAHWWPAILLGGIILAAFITLVMARQQAV---P 117 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 GE++ + + + + L+ +Y +EI LL +++GA L L RR Sbjct: 118 GEVAEI-----GIRDFSRTLFQKYGIAVEIISMQLLFALVGA--LYLGRRR 161 >gi|300717643|ref|YP_003742446.1| NADH dehydrogenase I chain J [Erwinia billingiae Eb661] gi|299063479|emb|CAX60599.1| NADH dehydrogenase I chain J [Erwinia billingiae Eb661] Length = 184 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY GA++ Sbjct: 5 FYLCGLVAVLTTLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 V F+F++MML++ E + +++ + +IG Sbjct: 65 VLFVFVVMMLNLG-ESVQAQEREWLKPTVWIG 95 >gi|289641418|ref|ZP_06473582.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia symbiont of Datisca glomerata] gi|289508754|gb|EFD29689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia symbiont of Datisca glomerata] Length = 277 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 89/175 (50%), Gaps = 10/175 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ + +A++++ +V RN ++ L+ A ++L A F+ + +VVY Sbjct: 20 EAATFWVLAPVAVLAALGMVLARNAVHGALLLVTNLFCLAVFYMLQDAPFLGFVQIVVYT 79 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILAAELIVCASNFMVFSA 117 GA++V FLF++M++ +D + RG LG F G+L + N + Sbjct: 80 GAIMVLFLFVLMLVGVDSSDSLVETLRGQRVAAIVLGVGFAGLLVFPIGGVIDNGTTAAG 139 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + G N++ I ++L+T Y + EI +L+++ +GA++L R R D K Sbjct: 140 LAAAN----DGGNIQAIARLLFTDYVFAFEIISALLIIAAVGAMILGHRERVDGK 190 >gi|317050800|ref|YP_004111916.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Desulfurispirillum indicum S5] gi|316945884|gb|ADU65360.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfurispirillum indicum S5] Length = 172 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L FY+ + S ++ RN + SV L+ F+ AG+F LL AEF+ ++ ++VY G Sbjct: 8 LVFYMLVVTILASGLAMIFTRNIVASVTCLVGTFLGVAGIFFLLNAEFIGVVQIMVYAGG 67 Query: 66 VIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + + +F IM+ D D EV P+ L + GIL +++ S ++ E Sbjct: 68 LSLLIIFAIMLTDPRDHEVDRPKSGNVMLAAAVSGILFIMMVIAISTAQWSFSDAE---- 123 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 IG +T Y P ++ +L +++ GAIVL + D K Sbjct: 124 PLTTQPAVYIGIQYFTNYIVPFYLAAILLSMALTGAIVLAKKEGEDEK 171 >gi|297625181|ref|YP_003706615.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Truepera radiovictrix DSM 17093] gi|297166361|gb|ADI16072.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Truepera radiovictrix DSM 17093] Length = 184 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 94/179 (52%), Gaps = 1/179 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F+L + + ++ + V+T+R P+++ +L+ + A ++ L A F+A I ++VY GA Sbjct: 2 LTFFLLAAVMVLGALGVITLRQPVHAALALVGTLLTLAVTYVTLQAHFLAAIQVIVYAGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRL 124 ++V FLF+IM+L+++ + R ++ G++AA + + + ++ Sbjct: 62 IMVLFLFVIMLLNVEGDEGTVRLAWVRPAAYLTGVVAAAGVALTAFLDARQLPDAQVITA 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 G +G VL+ Q+ ++ G +LL ++GA+ L+ R R+ +++ + E Sbjct: 122 ALAGGGAGALGGVLFNQFVLAFQLVGVLLLTGIVGAVSLVERSAREKGDEEVFGEPERE 180 >gi|311897899|dbj|BAJ30307.1| putative NADH-quinone oxidoreductase subunit J [Kitasatospora setae KM-6054] Length = 283 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/193 (22%), Positives = 97/193 (50%), Gaps = 28/193 (14%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +A+ + ++ +R ++S L + A +L GA F+ ++ +VVY Sbjct: 6 EAVQFWVLAVIAVGGALGMLLMRKAVHSALCLAATMIALAVCYLAQGAVFLGVVQIVVYT 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKR-------------GFLGSFFIGILAAELIVCAS 110 GA+++ FLF++M+ + + A+ K++ GF G + LA + + Sbjct: 66 GAIMMLFLFVVML--VGVSAADSLKEQLKGQRVAAALCGLGF-GVLLVAGLANAKLRDFT 122 Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +AEG NV+ + ++++T+Y + E++ +L+ + +GA+VL HR Sbjct: 123 GLAGANAEG----------NVQGLARLIFTKYVWAFEVTSALLITAAVGAMVLT--HREK 170 Query: 171 IKRQDISKQLESN 183 +K +QL + Sbjct: 171 VKAPPTQRQLAAQ 183 >gi|254819281|ref|ZP_05224282.1| NADH dehydrogenase subunit J [Mycobacterium intracellulare ATCC 13950] Length = 274 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 95/187 (50%), Gaps = 16/187 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + VV N +YS L + A +++ A F+ ++ +VVY Sbjct: 29 EAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVVYT 88 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF++M++ +D + RG +AA ++ +A G+++ Sbjct: 89 GAVMMLFLFVLMLIGVDSAESLRETLRGQR-------VAAVAAGVGFGILLIAAIGDVAT 141 Query: 124 LVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 F G NVE + +++++Y + E++ +L+ + +GA+VL HR +R+ Sbjct: 142 GGFAGLTTANAAGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLA--HRERFERRKT 199 Query: 177 SKQLESN 183 ++L Sbjct: 200 QRELSQE 206 >gi|48474399|sp|Q85CT7|NU6C_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|27807929|dbj|BAC55404.1| NADH dehydrogenase ND6 subunit [Anthoceros formosae] gi|27808102|dbj|BAC55504.1| NADH dehydrogenase ND6 subunit [Anthoceros formosae] Length = 200 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 26/195 (13%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF I S VV + N +YS F L FV + L+LLL A+FVA +++YVGAV Sbjct: 14 FFVFIELGLIFGSLGVVFLTNIVYSAFLLGLVFVCISFLYLLLDADFVATAQILIYVGAV 73 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA---------------SN 111 + +F +M+++ +P+ + FL S+ +G LI+C SN Sbjct: 74 NILIVFAVMLIN------KPQSLQ-FLPSWTVGD-TITLILCTSLFFLLISMILSISWSN 125 Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + ++ V K ++V+ IG L + P E+ +LL+++IGAI + R + + Sbjct: 126 IFSIAQSNKIGEQVLK-SSVQGIGSSLLIDFLLPFELLSIVLLVALIGAITIA-RREKKV 183 Query: 172 KRQDISKQLESNPDN 186 K Q ++ L+ D+ Sbjct: 184 KLQK-NRTLQVTKDS 197 >gi|289474437|gb|ADC97829.1| NADH dehydrogenase subunit 6 [Alaskagorgia sp. USNM 1115602] Length = 155 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 7/151 (4%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + I+ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLL 114 Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 ++MIGAI+L + + L S D Sbjct: 115 VAMIGAILLAKQPNSPFLYNSHGESLRSRQD 145 >gi|90200379|ref|NP_777467.2| NADH dehydrogenase subunit 6 [Anthoceros formosae] Length = 197 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 26/198 (13%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF I S VV + N +YS F L FV + L+LLL A+FVA +++YVGAV Sbjct: 11 FFVFIELGLIFGSLGVVFLTNIVYSAFLLGLVFVCISFLYLLLDADFVATAQILIYVGAV 70 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA---------------SN 111 + +F +M+++ +P+ + FL S+ +G LI+C SN Sbjct: 71 NILIVFAVMLIN------KPQSLQ-FLPSWTVGD-TITLILCTSLFFLLISMILSISWSN 122 Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + ++ V K ++V+ IG L + P E+ +LL+++IGAI + R + + Sbjct: 123 IFSIAQSNKIGEQVLK-SSVQGIGSSLLIDFLLPFELLSIVLLVALIGAITIA-RREKKV 180 Query: 172 KRQDISKQLESNPDNSIV 189 K Q ++ L+ D+ I+ Sbjct: 181 KLQK-NRTLQVTKDSFIL 197 >gi|145298715|ref|YP_001141556.1| NADH dehydrogenase subunit J [Aeromonas salmonicida subsp. salmonicida A449] gi|142851487|gb|ABO89808.1| NADH dehydrogenase I, J subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 183 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 15/184 (8%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L FY + +A+ S+ V++ NP++++ +LI + + A +F LGA F + ++VY GA Sbjct: 3 LAFYAAALVAVYSTLRVISTSNPMHALLNLIISIIAVAMIFFCLGASFAGALQVIVYAGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEGELSR 123 ++V F+F++MML++ A+ +K +L G A + +++ + + G + Sbjct: 63 IMVLFVFVVMMLNLGSSEAQEKK---WLTPMTWGGPALLSLILLGFLAYGILGVTG--GQ 117 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 L + + +G L+ Y +E++ +LL ++ A + R+D S ++ S Sbjct: 118 LGLSDVSAKEVGIALFGPYVLAVELASILLLAGLVTA--------YHLGREDKSGEVLSV 169 Query: 184 PDNS 187 P S Sbjct: 170 PRAS 173 >gi|159901497|ref|YP_001547744.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Herpetosiphon aurantiacus ATCC 23779] gi|159894536|gb|ABX07616.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Herpetosiphon aurantiacus ATCC 23779] Length = 220 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + + + S +VVTVRN I+S LI +F+ A L+LL+ AEF+A++ ++VY GAV Sbjct: 9 FIVIALLTLGSGIMVVTVRNIIHSALWLIASFIGVAALYLLMEAEFLAVVQILVYAGAVS 68 Query: 68 VFFLFIIMML-DIDIEVAEPRKKRGF------LGSFFIGILAAELIVCASNFMVFSAEGE 120 + LF IM+ + E +R + LG F G++ L S + S + Sbjct: 69 ILVLFAIMLTRQVTGEGVRVVFERWWVALLIALGLF--GVIVPTLWQHGSTWEEASKLAQ 126 Query: 121 LSRLVFKGN--------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + +G IG+ +Y P E+ +LL+++IGAIV+ Sbjct: 127 VGPAPVEGTAAAGLQVATATEIGRSFMGEYLLPFEVISILLLMALIGAIVI 177 >gi|330830053|ref|YP_004393005.1| NADH dehydrogenase I subunit J [Aeromonas veronii B565] gi|328805189|gb|AEB50388.1| NADH dehydrogenase I, J subunit [Aeromonas veronii B565] Length = 183 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 54/83 (65%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L FY + +AI S+ V++ NP++++ +LI + + A +F LGA F + ++VY GA Sbjct: 3 LAFYASALVAIYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGAAFAGALQVIVYAGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRK 88 ++V F+F++MML++ A+ +K Sbjct: 63 IMVLFVFVVMMLNLGSAQAQEKK 85 >gi|208435163|ref|YP_002266829.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori G27] gi|208433092|gb|ACI27963.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori G27] Length = 166 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 20/170 (11%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYVGAVIV + F +M + Sbjct: 2 ALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFGMMFFN 61 Query: 79 IDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE-LSRLVFKG------NN 130 EV E ++ L + G+ L LI+ A + GE LS V N Sbjct: 62 SAAEVIERKQSPKILCALSFGVALLLTLILSAPSI------GENLSNQVNSNAIDAQIPN 115 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR------HRRDIKRQ 174 ++ IG VL+T Y P E + +LL++M+G I ++ H + IK Sbjct: 116 IKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKES 165 >gi|156743325|ref|YP_001433454.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus castenholzii DSM 13941] gi|156234653|gb|ABU59436.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus castenholzii DSM 13941] Length = 170 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 4/149 (2%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N I+S L+ FV + L++LL A F+ +I L+VY GA+IV FLF++M+L E AE Sbjct: 25 NAIHSAIFLLINFVAISVLYVLLYAPFLFVIQLIVYAGAIIVLFLFVVMLL--GAERAED 82 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-NNVENIGKVLYTQYAYP 145 ++R F +G+ A +++ ++V + + + E I + L+T Y P Sbjct: 83 TRER-FAWQRPLGLTLAAILLGLIGYIVLRGPASGAMVADQQFAAPERIAETLFTTYLLP 141 Query: 146 LEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 EI+ F+LL +++G +VL + R+ Sbjct: 142 FEITAFLLLAAIVGVVVLHMSGNHAESRE 170 >gi|223936523|ref|ZP_03628434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium Ellin514] gi|223894687|gb|EEF61137.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium Ellin514] Length = 191 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 9/192 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + + ++S +++RN ++ SL F A ++L L A+FV ++VY+GAV Sbjct: 5 FAIIAALTLVSGIAAMSLRNLVHCALSLAITFAGLAAMYLQLDAQFVGFAQILVYIGAVA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRLVF 126 + +F I +L E +P R S+ +GI +A + + S + Sbjct: 65 ILIVFAI-LLTRSSEAPQPVISR----SWIVGIAIAVAVFGVMIRLIASSPIAQRGWPEK 119 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK---RQDISKQLESN 183 G V+ IG L T++ PLE G +L ++ IGA+++ + + R + S + Sbjct: 120 PGPTVKQIGDQLMTRFVLPLEAMGLLLTVATIGAVIIAMNEKTKAGLQLRGNDSHPVPGT 179 Query: 184 PDNSIVMVKVKS 195 S +M +K+ Sbjct: 180 TPQSELMKDLKT 191 >gi|119485497|ref|ZP_01619825.1| NADH dehydrogenase subunit J [Lyngbya sp. PCC 8106] gi|119457253|gb|EAW38379.1| NADH dehydrogenase subunit J [Lyngbya sp. PCC 8106] Length = 232 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 25/196 (12%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F L + M + + VV + N +YS F L F++ AGL++LL A+FVA +++YV Sbjct: 32 QIISFGLLTVMMLGGALGVVLLENIVYSAFLLGGVFMSMAGLYILLNADFVAAAQVLIYV 91 Query: 64 GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---- 116 G+V V LF IM+++ + P ++G A +VC+ F + S Sbjct: 92 GSVNVLILFGIMLVNKQESFKALPNPWVRKG-----------ATALVCSGLFALLSTMVL 140 Query: 117 AEGELSRLVFKGNNVEN----IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + +S+ E+ IG+ +T + P E++ LL++M+GAI+L RRD Sbjct: 141 STPWMSQATVSVPPEESSIMIIGQHFFTDFLLPFELASVFLLMAMVGAIIL---ARRDFI 197 Query: 173 RQDISKQLESNPDNSI 188 I ++ P ++ Sbjct: 198 PDLIPEEKIQTPGWTL 213 >gi|289606445|emb|CBI61288.1| putative NADH dehydrogenase subunit 6 [Sordaria macrospora] Length = 238 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 45/202 (22%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +AI V+ +NPI SV LI F + + +LLG F+ + L+VY+GA+ + FL Sbjct: 19 SILAIFCGISVIVNKNPIISVLFLIGLFASVSSYLILLGLSFIGLAYLIVYIGAISILFL 78 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------------------------- 103 FI+M+++I I + + +GI + Sbjct: 79 FILMLINIRISELQSNTNNSIPLTIILGISLSYSLFQLLPYDIAILSNFSSNINNNLYNL 138 Query: 104 ----------ELIV-----CA--SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPL 146 ELI C+ +N ++F + + N++ IG V+Y+ Y+ L Sbjct: 139 SMNKQNNGNLELIPLPQFHCSLKNNDLLFVTSKIWDGNLAESNHITTIGNVMYSNYSIWL 198 Query: 147 EISGFILLLSMIGAIVLMLRHR 168 ++ FILLL+M+G+IV++++ Sbjct: 199 FLASFILLLAMVGSIVIIMKSN 220 >gi|22298211|ref|NP_681458.1| NADH dehydrogenase subunit J [Thermosynechococcus elongatus BP-1] gi|22294390|dbj|BAC08220.1| NADH dehydrogenase subunit 6 [Thermosynechococcus elongatus BP-1] Length = 200 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 11/168 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++ F+ + II++ VV + N +YS F L F++ AGL++L+ A+FV+ +++YV Sbjct: 8 QTITFFALAAAVIIAALGVVLLDNVVYSAFLLGGVFLSIAGLYILMNADFVSAAQILIYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKR----GFLGSFFIGILAAELIVCASNFMVFSAEG 119 GAV V LF IM+++ E P R G +G+ A M+ Sbjct: 68 GAVNVLILFAIMLVN-KRETYTPVPGRWLRQGGAAVVSLGVFA------LLTKMILQTPW 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +LS + +++ IG+ ++ + P E++ +LL+++IGA+VL R Sbjct: 121 QLSSVPPTPDSITTIGQHFFSDFLLPFELASVLLLMALIGAVVLARRE 168 >gi|270308200|ref|YP_003330258.1| NADH:quinone oxidoreductase subunit 6 (chain J) [Dehalococcoides sp. VS] gi|270154092|gb|ACZ61930.1| NADH:quinone oxidoreductase subunit 6 (chain J) [Dehalococcoides sp. VS] Length = 160 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 12/165 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + I S+ LVV V+N +S LI F++ AG+FLLL A+F+A + +++Y+GA+ Sbjct: 5 FWIIAITCIASALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIGAIS 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V + I ML +++ K F + +L + +M+ S+ S Sbjct: 65 VLIILAI-MLTREVQRGNLTNKLKIPALFVVTVLGGVM-----TYMLISSNWTSSDAPAP 118 Query: 128 GNNVENIGKVLYTQYAYPLE--ISGFILLLSMIGAIVLMLRHRRD 170 + ++L+ + L I+G ILL+++IGAIVL+ RD Sbjct: 119 STTTAGLAEMLFGSDGFGLGVLITGVILLVAIIGAIVLV----RD 159 >gi|108761433|ref|YP_629344.1| NADH dehydrogenase I subunit J [Myxococcus xanthus DK 1622] gi|108465313|gb|ABF90498.1| NADH dehydrogenase I, J subunit [Myxococcus xanthus DK 1622] Length = 168 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 10/159 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ + F F+ + ++S+ V+ R+PI S +L+ F AG+++LL A VA++ ++ Sbjct: 1 MNIELILFGAFALLTLLSAGTVIFARSPINSAMALVSTFFFMAGIYVLLWAHTVAVMQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDI--DIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVF 115 VY GA++V FLF+IM+L++ +P R G+ +G +LA L+ + Sbjct: 61 VYAGAIMVLFLFVIMLLNLGESPTRGKPTVARVAGGAATVGLFAVLAIILLKLPAEPATL 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S + S + +G+V++TQ+ +P E +LL Sbjct: 121 STGAQASF-----GTIATMGQVIFTQWLFPFEAVSLLLL 154 >gi|146312466|ref|YP_001177540.1| NADH dehydrogenase subunit J [Enterobacter sp. 638] gi|145319342|gb|ABP61489.1| NADH dehydrogenase subunit J [Enterobacter sp. 638] Length = 184 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 102/185 (55%), Gaps = 20/185 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ AE ++R +L +IG IL+A ++V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLG--GAEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G + + +G L+ Y +E++ +LL ++ A + R++ + ++ S Sbjct: 118 GIDGTPISAKEVGIALFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169 Query: 183 NPDNS 187 N + Sbjct: 170 NRTDD 174 >gi|169629229|ref|YP_001702878.1| NADH dehydrogenase subunit J [Mycobacterium abscessus ATCC 19977] gi|169241196|emb|CAM62224.1| NADH-quinone oxidoreductase, J subunit NuoJ [Mycobacterium abscessus] Length = 259 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 14/185 (7%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F++ +A++ + V+ +YS L V A F+ GA F+ + +VV Sbjct: 23 TWEGVTFWVLGAIAVLGALGVIAAPKAVYSAIFLAMTMVILAVFFVAQGALFLGVAQVVV 82 Query: 62 YVGAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 Y GAV++ FLF++M + +D +E ++ GILA I AS VF Sbjct: 83 YTGAVMMLFLFVLMFVGVDSSDSLVETLPGQRVGAVAAGLGFGILAIASIGNAST-TVFV 141 Query: 117 AEGEL-SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G+ SR NVE + + ++ Y + E++G +L+ + IGA+VL HR + + Sbjct: 142 GLGQANSR-----GNVEGLAERIFIDYLWAFELTGALLITATIGAMVLA--HREKLGQTG 194 Query: 176 ISKQL 180 ++L Sbjct: 195 GQREL 199 >gi|33519936|ref|NP_878768.1| NADH dehydrogenase I chain J [Candidatus Blochmannia floridanus] gi|33504282|emb|CAD83174.1| NADH dehydrogenase I chain J [Candidatus Blochmannia floridanus] Length = 183 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 8/168 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AII++ LV+ NPIY++ LIF+ + + L A F I +++Y GA++ Sbjct: 5 FYVSGIIAIIATILVIISNNPIYALLYLIFSLLCTSCNLFSLNASFAGSIEIIIYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 V F+F IMM D+ +I + K+ FL S I + A L++ A +V + +++ Sbjct: 65 VLFMFSIMMFDMKNIILNVCNKEYTFL-SLRICV-GASLLISALLIIVLFSILQITNCFI 122 Query: 127 KGNN----VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G N ++ IG L+ Y +E++ F LLLS + A++ + + +D Sbjct: 123 DGINCVIDIKQIGITLFGPYMLIVEVASF-LLLSALIAVIHIAQEDKD 169 >gi|56791558|gb|AAW30317.1| NADH dehydrogenase subunit 6 [Eichhornia crassipes] Length = 159 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 11/138 (7%) Query: 53 FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN 111 F AMI VV++GA+ V FLF++MM +I I R S IG IL E+ N Sbjct: 21 FSAMIFPVVHIGAIAVSFLFVVMMFNIQIAEIHEXVLRYLPVSGIIGLILWWEMFFILDN 80 Query: 112 FMV-----FSAEGELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + L V G N+E +G +LYT Y+ + ILL++MIGAI Sbjct: 81 ETIPLLPTHRNTTSLRYTVHAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAI 140 Query: 162 VLMLRHRRDIKRQDISKQ 179 VL + +KRQD+ ++ Sbjct: 141 VLTMHRTTKVKRQDVFRR 158 >gi|111022881|ref|YP_705853.1| NADH dehydrogenase subunit J [Rhodococcus jostii RHA1] gi|110822411|gb|ABG97695.1| probable NADH dehydrogenase subunit J [Rhodococcus jostii RHA1] Length = 269 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 16/187 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++ + +A+I + VV+ +YS L + A ++ GA F+ ++ +VVY Sbjct: 19 EGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIAQGALFLGVVQIVVYT 78 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF++M++ +D + R G I A + SA S Sbjct: 79 GAVMMLFLFVLMLIGVDSSESLVENLR---GQRVAAIAAGLGFGLLLIGGIGSA----SV 131 Query: 124 LVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 F G NVE + ++++ +Y + E++G +L+ + IGA+VL HR +R+ Sbjct: 132 SAFTGLDQANAAGNVEGLAELVFVRYVWAFELTGALLITATIGAMVLA--HRERFERRKD 189 Query: 177 SKQLESN 183 ++L + Sbjct: 190 QRELSQD 196 >gi|312200058|ref|YP_004020119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp. EuI1c] gi|311231394|gb|ADP84249.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp. EuI1c] Length = 287 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 12/191 (6%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V ++L F++ + +A+I + +V + ++ L+ A +LL A F+ + +VV Sbjct: 17 VGETLTFWIIAPIAVIGALGMVFAKKAVHGALMLVANLFCVAVCYLLQDAPFLGFVQIVV 76 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILAAELIVCASNFMVF 115 Y GA++V FLF++M++ ++ + RG LG F G+L L N Sbjct: 77 YTGAIMVLFLFVLMLIGVESSESLVETLRGQRVAAVVLGLGFAGLLVFPLGKAIKN---Q 133 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIK 172 A G G N+ I ++L+TQY + E +L+++ +GA++L R R R + Sbjct: 134 PAAGVADVNQAGGGNIHAIARLLFTQYVFAFEAVSALLVIAAVGAMILSHRERTGPRPSQ 193 Query: 173 RQDISKQLESN 183 ++ + +++ Sbjct: 194 KETLRRRIAEG 204 >gi|242239960|ref|YP_002988141.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech703] gi|242132017|gb|ACS86319.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech703] Length = 181 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 30/191 (15%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY GA++ Sbjct: 5 FYATAIIAVLATLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRK---KRG-FLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 V F+F++MML++ V + K K G ++G GIL+ L+ G + + Sbjct: 65 VLFVFVVMMLNLGHSVVDQEKAWLKPGVWIGP---GILSLVLL------------GVIIK 109 Query: 124 LVFKGN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR--DIK 172 +F+ N + + +G L+ Y +E++ +LL ++ A + +R D+ Sbjct: 110 GIFRLNGQDISGGMIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGGDVL 169 Query: 173 RQDISKQLESN 183 +D K E Sbjct: 170 AKDDKKSTEER 180 >gi|118465874|ref|YP_883194.1| NADH dehydrogenase subunit J [Mycobacterium avium 104] gi|254776464|ref|ZP_05217980.1| NADH dehydrogenase subunit J [Mycobacterium avium subsp. avium ATCC 25291] gi|118167161|gb|ABK68058.1| NADH dehydrogenase subunit j [Mycobacterium avium 104] Length = 274 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 16/185 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + VV N +YS L + A +++ A F+ ++ +VVY Sbjct: 29 EAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVVYT 88 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG-----FLGSFFIGILAAELIVCASNFMVFSAE 118 GAV++ FLF++M++ +D + RG GIL LI N A Sbjct: 89 GAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVAAGVGFGIL---LIAAVGNV----AS 141 Query: 119 GELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G + L NVE + +++++Y + E++ +L+ + +GA+VL HR +R+ Sbjct: 142 GGFAGLTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLA--HRERFERRKT 199 Query: 177 SKQLE 181 ++L Sbjct: 200 QRELS 204 >gi|150017831|ref|YP_001310085.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Clostridium beijerinckii NCIMB 8052] gi|149904296|gb|ABR35129.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Clostridium beijerinckii NCIMB 8052] Length = 163 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 27/167 (16%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+ +F+ I + VV +N I+S S+I F+ A +F+LL A+F+A+ +++Y GA+ Sbjct: 7 FWPIAFLIIAFAIGVVYSKNIIHSALSMILTFIGIAVVFILLQADFLALAQILIYAGAIS 66 Query: 68 VFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + +F IM+ D++ + P K + G L C F G ++RL+ Sbjct: 67 ILIVFAIMLTRKNDMKNSNPFNKLRWTG----------LAFCLGFF------GLITRLIL 110 Query: 127 KGN------NVEN----IGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + N N+EN I + Y P E+S +LL++++GAI+L Sbjct: 111 RSNFTYKNLNIENTISAIADGFFGNYMIPFEVSALLLLIALVGAIIL 157 >gi|133900542|gb|ABO41437.1| NADH dehydrogenase subunit 6 [Rafflesia pricei] Length = 181 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 15/173 (8%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F +GL LLLG + AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRETSGLLLLLGLDLSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL--------VFKGN 129 I R S IG IL E+ I+ + + + + L V Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILYKETLPLLPTQRKTTSLRYTVYAEKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 ++E +G +LYT Y + +LL++MIGAIVL + HR +KRQD+ ++ Sbjct: 123 HLETLGNLLYTYYFVWFLVPSLLLLVAMIGAIVLTM-HRTTHSAVKRQDLFRR 174 >gi|298346127|ref|YP_003718814.1| NADH dehydrogenase subunit J [Mobiluncus curtisii ATCC 43063] gi|304390113|ref|ZP_07372067.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236188|gb|ADI67320.1| NADH dehydrogenase subunit J [Mobiluncus curtisii ATCC 43063] gi|304326595|gb|EFL93839.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 324 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 18/168 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++F S +A+I++ V +++ ++ V AG++ +GAEF+ + +VVY Sbjct: 18 QTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVVYT 77 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--------GILAAELIVCASNFMVF 115 GA+++ FLF+IM++ + V PR + +G+ GI+A IV A N V Sbjct: 78 GAIMMMFLFVIMLVGVQA-VDSPRDSK--VGTVAAAVLLVVAFGIMA---IVAAVNTTV- 130 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G +R N V +V+ T YA PLE+ +L+++ +GA+ L Sbjct: 131 --NGAPARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSL 175 >gi|315657370|ref|ZP_07910252.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491842|gb|EFU81451.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 324 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 18/168 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++F S +A+I++ V +++ ++ V AG++ +GAEF+ + +VVY Sbjct: 18 QTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVVYT 77 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--------GILAAELIVCASNFMVF 115 GA+++ FLF+IM++ + V PR + +G+ GI+A IV A N V Sbjct: 78 GAIMMMFLFVIMLVGVQA-VDSPRDSK--VGTVAAAVLLVVAFGIMA---IVAAVNTTV- 130 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G +R N V +V+ T YA PLE+ +L+++ +GA+ L Sbjct: 131 --NGAPARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSL 175 >gi|315654706|ref|ZP_07907612.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii ATCC 51333] gi|315491170|gb|EFU80789.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii ATCC 51333] Length = 324 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 18/168 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++F S +A+I++ V +++ ++ V AG++ +GAEF+ + +VVY Sbjct: 18 QTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVVYT 77 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--------GILAAELIVCASNFMVF 115 GA+++ FLF+IM++ + V PR + +G+ GI+A IV A N V Sbjct: 78 GAIMMMFLFVIMLVGVQA-VDSPRDSK--VGTVAAAVLLVVAFGIMA---IVAAVNTTV- 130 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G +R N V +V+ T YA PLE+ +L+++ +GA+ L Sbjct: 131 --NGAPARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSL 175 >gi|317048931|ref|YP_004116579.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pantoea sp. At-9b] gi|316950548|gb|ADU70023.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pantoea sp. At-9b] Length = 183 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 60/92 (65%), Gaps = 1/92 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + ++ AG+F +GA F + ++VY GA++ Sbjct: 5 FYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 V F+F++MML++ + + +++ S +IG Sbjct: 65 VLFVFVVMMLNLG-KSQQDQEREWLKPSLWIG 95 >gi|268627909|gb|ACZ13376.1| NADH dehydrogenase subunit 6 [Isidella sp. I3b] Length = 70 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 53/71 (74%), Gaps = 1/71 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MNSLFM-IFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFI 73 VGA+ + FLF+ Sbjct: 60 VGAIAILFLFV 70 >gi|189500533|ref|YP_001960003.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium phaeobacteroides BS1] gi|189495974|gb|ACE04522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium phaeobacteroides BS1] Length = 174 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 15/150 (10%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FYLF+ + + S+ VV RN IYS FSL+F F A L++ L A+F+A+ ++VYVG Sbjct: 7 TVIFYLFAAVTVFSAAFVVFSRNIIYSAFSLLFTFFGVAALYVFLSADFIAVTQIMVYVG 66 Query: 65 AVIVFFLF------IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 ++V LF IMM D+ +V L S G++ V AE Sbjct: 67 GILVLLLFGVMFTNKIMMTDLKTDVLNILPGIVLLLSITGGLIYT---------FVARAE 117 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 S + +G+ VE IG ++Y P E+ Sbjct: 118 WFTSTVQLQGSVVEKIGFETMSRYVLPFEM 147 >gi|257852606|gb|ACV71315.1| NADH dehydrogenase subunit 6 [Euphorbia polychroma] Length = 161 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 24/160 (15%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI---- 81 +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I I Sbjct: 3 KNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIH 62 Query: 82 -EVAEPRKKRGFLGSFF------------IGILAAELIVCASNFMVFSAEGELSRLVFKG 128 EV G +G F I +L + + + V++ + V Sbjct: 63 EEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGK------VRSW 116 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 N+E +G +LYT Y+ + ILL++MIGAIVL + HR Sbjct: 117 TNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTM-HR 155 >gi|41409308|ref|NP_962144.1| NADH dehydrogenase subunit J [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398128|gb|AAS05758.1| NuoJ [Mycobacterium avium subsp. paratuberculosis K-10] Length = 274 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 92/185 (49%), Gaps = 16/185 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + VV N +YS L + A +++ A F+ ++ +VVY Sbjct: 29 EAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVVYT 88 Query: 64 GAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GAV++ FLF++M++ +D E ++ GIL LI N A Sbjct: 89 GAVMMLFLFVLMLIGVDSAESLRETLRGQRVAAVAAGVGFGIL---LIAAVGNV----AS 141 Query: 119 GELSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G + L NVE + +++++Y + E++ +L+ + +GA+VL HR +R+ Sbjct: 142 GGFAGLTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLA--HRERFERRKT 199 Query: 177 SKQLE 181 ++L Sbjct: 200 QRELS 204 >gi|7524984|ref|NP_050082.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum] gi|6093583|sp|Q37314|NU6M_DICDI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|699594|dbj|BAA03936.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum] gi|4958887|dbj|BAA78064.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum] Length = 226 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 32/186 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 NPIYS+ +LI + A + L + EF+A I ++V VGA+ V FLFI+MM++I+I E+ E Sbjct: 26 NPIYSILNLIVIYGCYASILLTVEMEFLACIYILVNVGAIAVLFLFIVMMININIVEIQE 85 Query: 86 PRKKR------GFLGSF-FIGIL--------AAELIVCASNFMVFSAEGELS-------- 122 KK G +G +GIL E+I S F++ S +L Sbjct: 86 TMKKYNIYMIVGIIGVVGLLGILITNYQIRIKEEVIADFSMFLINSEVVQLQATPSYLDF 145 Query: 123 -RLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAI------VLMLRHRRDIKRQ 174 L + ++ +G V+Y Y+ ++ ILL+ M+G I ++ R + +RQ Sbjct: 146 YSLFVETTDIRTMGSNVIYGSYSIWFIMACIILLIGMVGVIYITEDLIIEKRTLNERRRQ 205 Query: 175 DISKQL 180 DI+ Q+ Sbjct: 206 DINSQV 211 >gi|148243378|ref|YP_001228535.1| NADH dehydrogenase subunit J [Synechococcus sp. RCC307] gi|147851688|emb|CAK29182.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. RCC307] Length = 199 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 11/155 (7%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV-AE 85 N +Y+ F L F++ AGL+L+L A F+A +++YVGAV V LF IM+++ + A Sbjct: 32 NIVYAAFLLGGVFLSVAGLYLMLNASFIAAAQILIYVGAVNVLILFAIMLVNKKEAMGAS 91 Query: 86 PRK--KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143 P +R IG+ A L V S + + V +G+ ++ Y Sbjct: 92 PGVGLRRVLSTGVCIGLFALLLRVAFSTPWATPGPAAIGE-----DAVIRLGEHFFSDYL 146 Query: 144 YPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 P E++ +LL++MIGAIVL RRD+ DI Sbjct: 147 LPFELASVLLLMAMIGAIVL---ARRDVLATDIGT 178 >gi|225874135|ref|YP_002755594.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196] gi|225793660|gb|ACO33750.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196] Length = 172 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 10/174 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ +F+ + S+ +T+ I+ +L+ AF A L+L LGAEF + L+VYVGAV Sbjct: 5 FWILAFLTLASAVAAMTMARLIHCALALVLAFAGVATLYLNLGAEFAGLAQLLVYVGAVA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVCASNFMVFSAEGELSR 123 + +F I++ A P + F GS +LA +I S+ +V +A + Sbjct: 65 ILIVFAILLTRSSEVTAMPAARTAFSGSLIALAVFAVLARAII---SSRLVHAAPAQ--- 118 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V IG+ L Y PLE+ +L ++IGA+++ LR + + S Sbjct: 119 PIAPMATVRQIGEALMQPYVLPLEVLALLLTAALIGAVLIALREKPSKQGAPTS 172 >gi|257852680|gb|ACV71352.1| NADH dehydrogenase subunit 6 [Rafflesia tuan-mudae] Length = 180 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 15/173 (8%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V +NP++SV I F +GL LLLG + AMI VV++GA+ V FLF++MM I Sbjct: 3 MVARAKNPVHSVLFPILVFRETSGLLLLLGLDLSAMIFPVVHIGAIAVLFLFVVMMFHIQ 62 Query: 81 IEVAEPRKKRGFLGSFFIG-ILAAEL--IVCASNFMVFSAEGELSRL--------VFKGN 129 I R S IG IL E+ I+ + + + + L V Sbjct: 63 IAEIHEEVLRYLPVSGIIGLILWWEMFFILYKETLPLLPTQRKTTSLRYTVYAEKVRSWT 122 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQ 179 ++E +G +LYT Y + +LL++MIGAIVL + HR +KRQD+ ++ Sbjct: 123 HLETLGNLLYTYYFVWFLVPSILLLVAMIGAIVLTM-HRTTHSAVKRQDLFRR 174 >gi|84508581|ref|YP_448629.1| NADH dehydrogenase subunit 6 [Fucus vesiculosus] gi|39653304|gb|AAR29323.1| NADH dehydrogenase subunit 6 [Fucus vesiculosus] Length = 263 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 65/249 (26%) Query: 10 LFSFMAIISSFL---VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F F+ I+ + L V++ +NP+YS L+ F + + LLG EF+A++ L+VY GA+ Sbjct: 6 IFIFLTILGASLGVKVISTQNPVYSGLYLVLLFFLGSAISFLLGVEFMALLFLLVYAGAI 65 Query: 67 IVFFLFIIMMLDIDIEVAEP----RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGE- 120 V LF++MMLD+ + P +K+ ++G SFF+ L LI +S M F Sbjct: 66 AVLVLFVVMMLDVK-AIENPWSVNQKRFFYIGISFFVFFLIL-LISNSSLLMAFRVRSTS 123 Query: 121 -LSRL-----VFKGNNVENI---------------------------------------- 134 +S L VF ++ +NI Sbjct: 124 IISLLASFNVVFHNDDTKNILVGLLDENLTELFRLWFFHDQIINSFDKNTMWFVDFDSPC 183 Query: 135 -----GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 +LY+ +A L I+G +LL++M+GAI L L+ + + KQL N++ Sbjct: 184 GLNDPSYLLYSTHAILLIIAGVVLLIAMVGAISLTLQKN---CPESLYKQLGRESKNAVF 240 Query: 190 MVKVKSGKG 198 +K K G Sbjct: 241 TIKEKPNSG 249 >gi|154148356|ref|YP_001405798.1| NADH dehydrogenase subunit J [Campylobacter hominis ATCC BAA-381] gi|153804365|gb|ABS51372.1| NADH-quinone oxidoreductase, j subunit [Campylobacter hominis ATCC BAA-381] Length = 175 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 99/172 (57%), Gaps = 4/172 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY FS +++ + V +N +Y++ +L + +GLF LGAEF+ ++ ++VY GAVI Sbjct: 7 FYFFSVLSLGLFAVSVFSKNVLYAMSALAGGMIFISGLFFTLGAEFLGVVQIMVYTGAVI 66 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V + F +M + + +V E ++ + + + +++A L+V + S + ++ + Sbjct: 67 VLYGFSMMFFNANKDVKEAKENKII---YSLAVISAFLLVMIFVAPILSDKISAYPIIKE 123 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDISK 178 +N+E IG V++T+Y E+ +LL++MI IVL+ ++ + + ++ SK Sbjct: 124 LDNIEAIGLVIFTKYLIVFELVAIMLLVAMICGIVLVHKNMDKSLTLEEESK 175 >gi|77164628|ref|YP_343153.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosococcus oceani ATCC 19707] gi|254433511|ref|ZP_05047019.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nitrosococcus oceani AFC27] gi|76882942|gb|ABA57623.1| NADH dehydrogenase subunit J [Nitrosococcus oceani ATCC 19707] gi|207089844|gb|EDZ67115.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nitrosococcus oceani AFC27] Length = 167 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 61/92 (66%), Gaps = 1/92 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++S+ +V+T N I+++ LI + + A +F LLGA F A + +++Y GA++ Sbjct: 5 FYIAAIIAVVSTAMVITRLNAIHALLYLIVSLLAVALIFFLLGAPFAAALEVIIYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 V F+F++MML++ E A ++ R S +IG Sbjct: 65 VLFVFVMMMLNLG-EEAVAQENRWLTPSMWIG 95 >gi|296133531|ref|YP_003640778.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermincola sp. JR] gi|296032109|gb|ADG82877.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermincola potens JR] Length = 164 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 92/172 (53%), Gaps = 10/172 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F++ + + + S+ ++V RN +S +I F+ A +L+L A+F+A + ++VY G Sbjct: 2 TIMFWVIAIITLGSALMMVMNRNIFHSALFMIVTFIGVAATYLMLQADFMAAVQVLVYGG 61 Query: 65 AVIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 A+ +F +F IM+ D++ + K L + I+A LIV + MV +S Sbjct: 62 AIAIFVVFGIMLTQRGDMKQSNLFSKHAPLAA----IVALALIVI-NGVMVLKTNWAVSN 116 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 V I +++ +Y P E++ +LL+++IGA+++ +++K+ Sbjct: 117 AAPPTETVGPIAELMLQKYVIPFEVAAILLLVALIGAVII----AKEVKKTS 164 >gi|281428806|ref|YP_003354985.1| NADH dehydrogenase subunit 6 [Pneumocystis carinii] gi|270486323|gb|ACZ82946.1| NADH dehydrogenase subunit 6 [Pneumocystis carinii] Length = 174 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 21/165 (12%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S ++I+ + LVVT +NP+ S+ LI F++ + L ++ + + VYVGA+ + F+ Sbjct: 9 SCLSILLAILVVTSKNPVLSLLYLIGLFIDIGVYLISLQLTYLGLSYITVYVGAIAMLFI 68 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGI-------------LAAELIV--CASNFMVFS 116 F+IMML +I+V E +KK +L S +G+ L E+I+ + F FS Sbjct: 69 FVIMML--NIQVVESKKKTNYLRSIPLGLFLGSSLVFTLYLSLPREIIMEKYSHLFSYFS 126 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 E + + VE +GKVLYT Y+ L + IL+L+++GAI Sbjct: 127 WENR----ILNPSVVEILGKVLYTDYSLWLLLISLILVLAIVGAI 167 >gi|268627920|gb|ACZ13386.1| NADH dehydrogenase subunit 6 [Lepidisis sp. C1a] Length = 71 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 53/72 (73%), Gaps = 1/72 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFII 74 VGA+ + FLF+I Sbjct: 60 VGAIAILFLFVI 71 >gi|296103961|ref|YP_003614107.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058420|gb|ADF63158.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 184 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 102/185 (55%), Gaps = 20/185 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ +E ++R +L +IG IL+A ++V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G + + +G L+ Y +E++ +LL ++ A + R++ + ++ S Sbjct: 118 GIDGTPIGAKEVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169 Query: 183 NPDNS 187 N + Sbjct: 170 NRTDD 174 >gi|262200412|ref|YP_003271620.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gordonia bronchialis DSM 43247] gi|262083759|gb|ACY19727.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gordonia bronchialis DSM 43247] Length = 269 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 25/180 (13%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A++ + VV +YS L + A ++ GA F+ ++ +VVY Sbjct: 16 EAVQFWVLGGVAVLGALGVVFATKAVYSAIFLATTMIILAIFYVAQGALFLGVVQVVVYT 75 Query: 64 GAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GAV++ FLF++M++ +D V R +R LAA +I ++ + G Sbjct: 76 GAVMMLFLFVLMLIGVDSSDSLVETLRGQR----------LAAAVIGLGFGILLIAGIGT 125 Query: 121 LSRLVFKG------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 S F G NVE I ++++ QY + E++G +L+ + +GA+VL R R Sbjct: 126 ASVATFAGAPAAGGSSTAGDGNVEAIAELIFVQYLWAFELTGALLITATLGAMVLAHRER 185 >gi|226306205|ref|YP_002766165.1| NADH-quinone oxidoreductase chain J [Rhodococcus erythropolis PR4] gi|226185322|dbj|BAH33426.1| NADH-quinone oxidoreductase chain J [Rhodococcus erythropolis PR4] Length = 265 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 97/191 (50%), Gaps = 11/191 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+IS+ VV +YS L + A +++ GA F+ ++ +VVY Sbjct: 22 EAVQFWILGTLAVISALGVVAAPKAVYSALFLAMTMIILAVFYIVQGALFLGVVQIVVYT 81 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF++M++ +D + RG S + I ++ S G Sbjct: 82 GAVMMLFLFVLMLVGVDSSDSLVETLRGQRVSAIV-IGVGFGLLLIGGLGNASISGFTGF 140 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----KRQDISKQ 179 N++ + +++ +Y + E++G +L+ + +GA +ML HR I ++++S+Q Sbjct: 141 TGLDQGNIDALADLIFIRYVWAFELTGALLITATLGA--MMLAHREKIGATLSQRELSQQ 198 Query: 180 ----LESNPDN 186 L S+ DN Sbjct: 199 RFAYLGSDEDN 209 >gi|404356|gb|AAB27397.1| orf100 [Marchantia polymorpha] Length = 100 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 7/95 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+F +A++S L + +NP++SV I F N GL +LLG +F AM LVVYVGA Sbjct: 4 FYVFIILALVSGALGIRAKNPVHSVVFFILVFFNTFGLLVLLGLDFFAMFFLVVYVGA-- 61 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR-----GFLGSFF 97 VF LF++MML I IE R GF+G F Sbjct: 62 VFILFVVMMLHIRIEEIHENVLRYLPIGGFIGLIF 96 >gi|148262405|ref|YP_001229111.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter uraniireducens Rf4] gi|146395905|gb|ABQ24538.1| NADH dehydrogenase subunit J [Geobacter uraniireducens Rf4] Length = 161 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 91/169 (53%), Gaps = 10/169 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ FY+ + +A+I++ +T ++ ++++ L+ +F A +F LLGA VA+ +++Y Sbjct: 1 MEATLFYILAAVAVIATGFAITEKHTVHAIVYLVTSFFALAVVFYLLGAPLVAVFEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA++V F+F+IMMLD+ P K G + +L ++ + + Sbjct: 61 AGAIMVLFMFVIMMLDL----GHPEKVALPGMRDWWPALLLGGIILAAIIALLTAQQQAV 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + +L + G + + +VL+ +Y +EI LL +++GA L L RR Sbjct: 117 IGKLPYVG--IRDFSRVLFRKYGIAVEIISMQLLFALVGA--LYLGRRR 161 >gi|117620263|ref|YP_856310.1| NADH dehydrogenase subunit J [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561670|gb|ABK38618.1| NADH-quinone oxidoreductase chain j [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 182 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 13/183 (7%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L FY + +AI S+ V++ NP++++ +LI + + A +F LGA F + ++VY GA Sbjct: 3 LAFYAAALVAIYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGASFAGALQVIVYAGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSRL 124 ++V F+F++MML++ A+ ++K + ++ L + +++ + + G L Sbjct: 63 IMVLFVFVVMMLNLG--SAQDQEKNWLTPTTWVGPGLLSLILLGFLAYGILGVTG--GEL 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 + + +G L+ Y +E++ +LL ++ A + R+D S ++ S P Sbjct: 119 GLTDVSAKAVGIALFGPYVLAVELASILLLAGLVTA--------YHLGREDKSGEVLSVP 170 Query: 185 DNS 187 S Sbjct: 171 KAS 173 >gi|282891841|ref|ZP_06300321.1| hypothetical protein pah_c198o032 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498274|gb|EFB40613.1| hypothetical protein pah_c198o032 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 168 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 21/163 (12%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++F + I+SS V++ R PIY+ S + + AGL+ L A+F+A++ ++VY GA++V Sbjct: 10 WVFGTILILSSLGVISSRKPIYASLSFLMTLLALAGLYQQLSAQFIAVMQVLVYAGAILV 69 Query: 69 FFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-F 126 F+F+I++ D ++A + K + L+ A +F+ R Sbjct: 70 IFMFVIVLFQDAHEKIALFKAKS-----------SPPLLFAAGGLFLFTMLFLSERFYNL 118 Query: 127 KGNN--------VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 K +N VE +GK LY + +P E + L+++IGA+ Sbjct: 119 KTSNGPSEEFGTVETLGKALYADFFFPFEAVTLLFLIAVIGAV 161 >gi|268627908|gb|ACZ13375.1| NADH dehydrogenase subunit 6 [Isidella sp. I1a] Length = 70 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 53/71 (74%), Gaps = 1/71 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MNSLFM-IFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFFLFI 73 VGA+ + FLF+ Sbjct: 60 VGALAILFLFV 70 >gi|24372599|ref|NP_716641.1| NADH dehydrogenase subunit J [Shewanella oneidensis MR-1] gi|24346624|gb|AAN54086.1|AE015546_3 NADH dehydrogenase I, J subunit [Shewanella oneidensis MR-1] Length = 183 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 54/83 (65%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L FY + +A+ S+ V++ NP++++ +LI + + A +F LGA F + ++VY GA Sbjct: 3 LAFYASALVAVYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGAAFAGALQVIVYAGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRK 88 ++V F+F++MML++ + A+ + Sbjct: 63 IMVLFVFVVMMLNLGSDQAQEKN 85 >gi|187764076|ref|YP_001876525.1| NADH dehydrogenase subunit 6 [Dictyostelium fasciculatum] gi|160688784|gb|ABX45199.1| NADH dehydrogenase subunit 6 [Dictyostelium fasciculatum] Length = 241 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 42/189 (22%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++ + +V NPIYSV +LI FV + + +LL EF+A I ++V VGAV V FLFII Sbjct: 15 ALVCLYNIVKNINPIYSVLNLIVMFVCYSSMLILLDQEFLACIFILVNVGAVAVLFLFII 74 Query: 75 MMLDID-IEVAEPRKKR----GFLG------SFFIGILAAELIVCASN---------FMV 114 MM++I +E+ E KK F+G F IG + ++ N F Sbjct: 75 MMINITMVEIKENMKKYLPYITFMGLNIFMFLFIIG--SRYMLTVPENMTEHVYEQFFTQ 132 Query: 115 FSAEGELS-------------------RLVFKGNNVENIG-KVLYTQYAYPLEISGFILL 154 + + ELS L K +++NIG +LY+ + ++ +LL Sbjct: 133 LAKDNELSLGNVMKESYLININYVNIYELFIKTTDIKNIGANILYSSNSLWFVLACLMLL 192 Query: 155 LSMIGAIVL 163 ++M+G I L Sbjct: 193 IAMVGVINL 201 >gi|268627914|gb|ACZ13380.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1b] gi|268627915|gb|ACZ13381.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1a] gi|268627917|gb|ACZ13383.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D1a] Length = 71 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 53/72 (73%), Gaps = 1/72 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVY 59 Query: 63 VGAVIVFFLFII 74 VGA+ + FLF+I Sbjct: 60 VGAIAILFLFVI 71 >gi|226944926|ref|YP_002799999.1| NADH dehydrogenase subunit J [Azotobacter vinelandii DJ] gi|226719853|gb|ACO79024.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain J [Azotobacter vinelandii DJ] Length = 166 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 53/82 (64%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + A+ S+ V+T NP++++ LI + + A F LGA F ++ ++VY GA++ Sbjct: 5 FYLSAGFAVASTLRVITHTNPVHALLYLIVSLLAVAMCFFSLGAPFAGVLEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ VAE ++ Sbjct: 65 VLFVFVVMMLNLGPAVAEQERQ 86 >gi|301058577|ref|ZP_07199582.1| putative NADH-quinone oxidoreductase subunit J [delta proteobacterium NaphS2] gi|300447309|gb|EFK11069.1| putative NADH-quinone oxidoreductase subunit J [delta proteobacterium NaphS2] Length = 166 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY+ +A++++FL +T R I+ + L+ + + AA FL+LGA F A + ++ Y G Sbjct: 2 NLAFYVSGVIAVLATFLAITRREAIHGLVYLVVSLLAAAVAFLVLGAPFAAALEVITYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V LF +M L + K+ +F ++ +F+ G+ S + Sbjct: 62 AMMVMLLFAVMTLSPKARKEDDAKRP---HPWFWLGPLLLSVLLTGDFIYVLFAGKGSPV 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 + +G+VL+ Y +E++ +LL ++GA Sbjct: 119 SGSAVSPRQVGQVLFGPYVLGVELASMLLLAGLVGA 154 >gi|326382754|ref|ZP_08204444.1| NADH:ubiquinone oxidoreductase subunit J [Gordonia neofelifaecis NRRL B-59395] gi|326198344|gb|EGD55528.1| NADH:ubiquinone oxidoreductase subunit J [Gordonia neofelifaecis NRRL B-59395] Length = 282 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 18/198 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +I + VV +YS L + A +++ GA F+ ++ +VVY Sbjct: 17 EAVTFWVLGAVVVIGALGVVLSPKAVYSAVFLAMTMIILAVFYVMQGALFLGVVQVVVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIE---VAEPRKKR---GFLGSFF-------IGILAAELIVCAS 110 GAV++ FLF++M++ +D V R +R LG F IG + V A Sbjct: 77 GAVMMLFLFVLMLIGVDSSESLVESIRGQRLAAAGLGLGFAVLLIAAIGSATLAVFVGAP 136 Query: 111 NFMVFSAEGELS-RLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 +F +A G S L GN N+ + ++++ +Y + E++G +L+ + +GA+VL R R Sbjct: 137 DFSHGTAPGGPSTELRTGGNQNIRALAELIFGRYLWAFELTGALLITATLGAMVLAHRQR 196 Query: 169 ---RDIKRQDISKQLESN 183 R+ +R+ ++ S Sbjct: 197 FGPRNGQREQSVERFSSG 214 >gi|51893909|ref|YP_076600.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM 14863] gi|51857598|dbj|BAD41756.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM 14863] Length = 176 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 10/168 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + + ++S++ +VT ++ + +F AG+FLL+ AEF+A I ++VY GA+ Sbjct: 14 FIILAVVTLVSTYRMVTTPLITHAALFMALSFTAVAGIFLLMQAEFIAAIQVLVYAGAIT 73 Query: 68 VFFLFIIM---MLDIDIEVAEPRK-KRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELS 122 +F IM + DI + E K R +G + AA ++ S + + GE Sbjct: 74 TMVIFAIMLSGLRDIKRQQQERVKLWRSNPAVLVVGAVFAAFMLYLYSTANLPAGGGE-- 131 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 R V V IG L+T Y P E++ +LL++MIGAI+L + Sbjct: 132 RQVVP---VSAIGSQLFTTYVIPFEVASILLLVAMIGAIILTAKEAES 176 >gi|259907935|ref|YP_002648291.1| NADH dehydrogenase subunit J [Erwinia pyrifoliae Ep1/96] gi|224963557|emb|CAX55047.1| NADH dehydrogenase I chain J [Erwinia pyrifoliae Ep1/96] gi|283477816|emb|CAY73732.1| NADH dehydrogenase I chain J [Erwinia pyrifoliae DSM 12163] Length = 184 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ AE ++++ +L Sbjct: 65 VLFVFVVMMLNLG--GAEVQQEKDWL 88 >gi|295098081|emb|CBK87171.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 184 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88 V F+F++MML++ E+ + R+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86 >gi|116009011|gb|ABJ52175.1| NADH dehydrogenase subunit 6 [Phyllostachys edulis] Length = 173 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 14/152 (9%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + NPIYS FSL + + ++LL + FVA+ L++YVGA+ V +F +M +D Sbjct: 23 VVLLTNPIYSAFSLGLVLICISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFID--- 79 Query: 82 EVAEPRKKRGF--LGSFFIGILAAELIVC-ASNFMVFSAEGEL-----SRLVFKG--NNV 131 +E K + + +G F ++ ++ + + S G L +++V +G NNV Sbjct: 80 -GSEWSKNKNYWTIGDGFTSLVCITILFSLMTTILDTSWYGILWTTRSNQIVEQGLINNV 138 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + IG L T + P E+ ILL+S+IGAI + Sbjct: 139 QQIGIHLATDFYLPFELISIILLVSLIGAITM 170 >gi|292488835|ref|YP_003531722.1| NADH dehydrogenase I subunit J [Erwinia amylovora CFBP1430] gi|292899986|ref|YP_003539355.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC 49946] gi|291199834|emb|CBJ46958.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC 49946] gi|291554269|emb|CBA21583.1| NADH dehydrogenase I chain J [Erwinia amylovora CFBP1430] Length = 184 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ AE ++++ +L Sbjct: 65 VLFVFVVMMLNLG--GAEVQQEKDWL 88 >gi|310768157|gb|ADP13107.1| NADH dehydrogenase subunit J [Erwinia sp. Ejp617] Length = 184 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ AE ++++ +L Sbjct: 65 VLFVFVVMMLNLG--GAEVQQEKDWL 88 >gi|187736097|ref|YP_001878209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Akkermansia muciniphila ATCC BAA-835] gi|187426149|gb|ACD05428.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Akkermansia muciniphila ATCC BAA-835] Length = 236 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 52/82 (63%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + FY+F +A++ S +VV +RNP+ S + +F A + + LGA F+ ++ ++VY Sbjct: 6 SDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYA 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAE 85 GA++V F FIIM+L++ E + Sbjct: 66 GAIMVLFAFIIMLLNVKQETSP 87 >gi|86608754|ref|YP_477516.1| NADH dehydrogenase subunit J [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557296|gb|ABD02253.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 202 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 20/204 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + S MAI + VV + +YS F L F++ AGL+LLL A+FVA +++Y Sbjct: 7 VQLVTFVVLSAMAIGFALGVVWAPSIVYSGFLLGGVFLSMAGLYLLLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ A P K LG G+ A +VC F + +A + Sbjct: 67 VGAVNVLILFAIMLVNRRYNFA-PLK----LGWLRNGVTA---VVCLGLFALLAAMALNT 118 Query: 123 RLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDI 176 + ++V IG ++ Y P E++ +LL+++IGAIVL R D+ Sbjct: 119 PWPLQPIQPLSSVLVIGGHFFSDYLLPFELASVLLLMALIGAIVLARREFVLPQAGEGDL 178 Query: 177 S------KQLESNPDNSIVMVKVK 194 S QLES + +V + Sbjct: 179 SLLERARPQLESESERPAELVSTR 202 >gi|312172995|emb|CBX81250.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC BAA-2158] Length = 184 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ AE ++++ +L Sbjct: 65 VLFVFVVMMLNLG--GAEVQQEKDWL 88 >gi|313498023|gb|ADR59389.1| NADH dehydrogenase subunit J [Pseudomonas putida BIRD-1] Length = 166 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 V F+F++MML++ A ++RG+L GI A +I Sbjct: 65 VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98 >gi|170721049|ref|YP_001748737.1| NADH dehydrogenase subunit J [Pseudomonas putida W619] gi|169759052|gb|ACA72368.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudomonas putida W619] Length = 166 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 V F+F++MML++ A ++RG+L GI A +I Sbjct: 65 VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98 >gi|188533355|ref|YP_001907152.1| NADH dehydrogenase subunit J [Erwinia tasmaniensis Et1/99] gi|188028397|emb|CAO96258.1| NADH dehydrogenase I chain J [Erwinia tasmaniensis Et1/99] Length = 183 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ AE ++++ +L Sbjct: 65 VLFVFVVMMLNLG--GAEVQQEKDWL 88 >gi|261340668|ref|ZP_05968526.1| NADH dehydrogenase I, J subunit [Enterobacter cancerogenus ATCC 35316] gi|288317082|gb|EFC56020.1| NADH dehydrogenase I, J subunit [Enterobacter cancerogenus ATCC 35316] Length = 184 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88 V F+F++MML++ E+ + R+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86 >gi|296169181|ref|ZP_06850835.1| NADH-quinone oxidoreductase subunit J [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896160|gb|EFG75826.1| NADH-quinone oxidoreductase subunit J [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 278 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 96/187 (51%), Gaps = 16/187 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A++ + VV N +YS L + A +++ A F+ ++ +VVY Sbjct: 33 EAVAFWVLGALALVGAIGVVLSVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVVYT 92 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF++M++ +D AE K+ + +AA L ++ +A G + Sbjct: 93 GAVMMLFLFVLMLIGVD--SAESLKE-----TLHGQRIAAVLAGVGFGVLLIAAIGSGAT 145 Query: 124 LVFKG-------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 F G NVE + +++++Y + E++ +L+ + IGA+VL HR +R+ Sbjct: 146 GGFAGLTAANANGNVEGLAALIFSRYVWAFELTSALLITAAIGAMVLA--HRERFERRKT 203 Query: 177 SKQLESN 183 ++L Sbjct: 204 QRELSQE 210 >gi|26990821|ref|NP_746246.1| NADH dehydrogenase subunit J [Pseudomonas putida KT2440] gi|148546976|ref|YP_001267078.1| NADH dehydrogenase subunit J [Pseudomonas putida F1] gi|24985828|gb|AAN69710.1|AE016607_4 NADH dehydrogenase I, J subunit [Pseudomonas putida KT2440] gi|148511034|gb|ABQ77894.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Pseudomonas putida F1] Length = 166 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 V F+F++MML++ A ++RG+L GI A +I Sbjct: 65 VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98 >gi|256371189|ref|YP_003109013.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidimicrobium ferrooxidans DSM 10331] gi|256007773|gb|ACU53340.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidimicrobium ferrooxidans DSM 10331] Length = 192 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 10/168 (5%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-I 81 V+ R P+++ L+ A LF+ GA+F+A + +VVY GAV+V FLF+IM+L +D + Sbjct: 29 VSARQPVHAALFLVLTLFGVAILFIQEGAQFLAAVQVVVYAGAVVVLFLFVIMLLGVDRV 88 Query: 82 EVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAE---GELSRLVFKGNNVENIGK 136 EV+ + + IG+ A EL + A V A G+LS G+N+ + + Sbjct: 89 EVSSIVGSGWRVWAAGIGVAAVLVELGLLAIGHEVTGASSLAGKLS----AGSNLGVLAR 144 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 ++T Y P E++ +L++++IGA+VL R R+ +S+ E +P Sbjct: 145 SVFTTYVLPFELTSVLLVIAVIGAVVLARRLRQRSDATTVSRSEEVHP 192 >gi|237809388|ref|YP_002893828.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tolumonas auensis DSM 9187] gi|237501649|gb|ACQ94242.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tolumonas auensis DSM 9187] Length = 175 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 8/140 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FY S +AI+++ V+T NP++++ LI + + +F LGA FV + ++VY G Sbjct: 2 ELAFYGSSVVAILATLGVITGTNPMHALLYLIVSLIAVGMIFFSLGASFVGAMQVIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ A+ ++++ +IG LI+ A VF A Sbjct: 62 AIMVLFVFVVMMLNLG--TAQEQERQWLRPITWIG----PLILSAGQMAVFYAALHGVPG 115 Query: 125 VFKGNNV--ENIGKVLYTQY 142 + G + + +G LY Y Sbjct: 116 IITGEPITAKQVGIALYGPY 135 >gi|149280561|ref|ZP_01886677.1| NADH dehydrogenase I chain J [Pedobacter sp. BAL39] gi|149228676|gb|EDM34079.1| NADH dehydrogenase I chain J [Pedobacter sp. BAL39] Length = 165 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 20/175 (11%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY + + +I S +VV +NP++SV LI F ++LL A+F+A++ +VY Sbjct: 1 MGTSVFYFVATLTVIFSLMVVFAKNPVHSVLYLIVTFFTLTVHYILLNAQFLAVVNFIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121 +GA++V FLF++M+L+++ + EP K L + V A +V + G L Sbjct: 61 MGAIMVLFLFVLMLLNLNKD-NEPLKST----------LVKVVGVVAGCCLVVTIVGSLK 109 Query: 122 -----SRLVFKGNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 +V + N V+N+GK L+ Y P E+S +LL +M+GA++L + + Sbjct: 110 ATAISDPVVLRNPNLGLVKNLGKELFGPYMLPFELSSILLLTAMVGAVLLTKKEK 164 >gi|322831992|ref|YP_004212019.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rahnella sp. Y9602] gi|321167193|gb|ADW72892.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rahnella sp. Y9602] Length = 186 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 95/166 (57%), Gaps = 13/166 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + A +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVLATLRVITHTNPVHALLYLIVSLLAIAAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ V E ++R +L + +IG +L+ L+V M+ S G L Sbjct: 65 VLFVFVVMMLNLG-NVQE--QERAWLKPATWIGPSVLSVILLVV----MIMSILG-LHDH 116 Query: 125 VFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 KG+ V+ +G L+ Y +E++ +LL ++ A + H+ Sbjct: 117 GIKGDMVDAKAVGIALFGPYVLAVELASMLLLAGLVVAFHIGREHK 162 >gi|119513555|ref|ZP_01632572.1| NADH dehydrogenase subunit J [Nodularia spumigena CCY9414] gi|119461788|gb|EAW42808.1| NADH dehydrogenase subunit J [Nodularia spumigena CCY9414] Length = 221 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 21/179 (11%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 M I ++ VV N +YS F L F++ A ++LLL +FVA ++VYVGAV V LF Sbjct: 35 MMIGAALGVVLFSNVVYSAFMLGGVFISMAAIYLLLNGDFVAAAQVLVYVGAVNVLILFA 94 Query: 74 IMMLDIDIEVAEPRKKRGF---------LGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 IM+++ + A P G LG F G+L+ ++ + +A S + Sbjct: 95 IMLVNKREDFA-PFPSTGLRKVLTAVVSLGLF--GLLSVMVLGTPWAYSTPAAVAPESSI 151 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 V IG+ +T + P E++ +LL++M+GAI+ L R + Q S +L+ + Sbjct: 152 VV-------IGEHFFTDFLLPFELASVLLLIAMVGAII--LARREYLPEQPTSSELQQS 201 >gi|73748697|ref|YP_307936.1| proton-translocating NADH-quinone oxidoreductase, J subunit [Dehalococcoides sp. CBDB1] gi|147669456|ref|YP_001214274.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Dehalococcoides sp. BAV1] gi|289432723|ref|YP_003462596.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dehalococcoides sp. GT] gi|73660413|emb|CAI83020.1| proton-translocating NADH-quinone oxidoreductase, J subunit [Dehalococcoides sp. CBDB1] gi|146270404|gb|ABQ17396.1| NADH dehydrogenase subunit J [Dehalococcoides sp. BAV1] gi|288946443|gb|ADC74140.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dehalococcoides sp. GT] Length = 160 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 8/159 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + I+S+ LVV V+N +S LI F++ AG+FLLL A+F+A + +++Y+GA+ Sbjct: 5 FWIIAITCIVSALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIGAIS 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V + I ML +++ K F + L + +M+ S+ S Sbjct: 65 VLIILAI-MLTREVQRGNLTNKLKIPALFVVTALGGIM-----TYMLISSNWTSSDAPPP 118 Query: 128 GNNVENIGKVLYTQYAYPLEI--SGFILLLSMIGAIVLM 164 + +L+ + L + +G ILL+++IGAIVL+ Sbjct: 119 STTTAGLADMLFGADGFGLGVLLTGVILLVAIIGAIVLV 157 >gi|223931106|ref|YP_002586968.1| NADH-plastoquinone oxidoreductase subunit 6 [Syntrichia ruralis] gi|219562320|gb|ACL27651.1| NADH-plastoquinone oxidoreductase subunit 6 [Syntrichia ruralis] Length = 193 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 22/180 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F+L I+ S VV + N +YS F L F + L+ L A+FVA +++Y Sbjct: 8 LHEIIFFLLEVGIILGSLGVVLLTNIVYSAFFLGLVFFCISILYFALNADFVAAAQILIY 67 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117 VGAV V +F +M+++ +P+ K+ F SF+ +VC S F ++ + Sbjct: 68 VGAVNVLIVFAVMLIN------KPQSKKLF--SFWTIGDKITFLVCLSLFFLLVTIILNT 119 Query: 118 EGELSRLVFKG---------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 L+ + NV+ IG +L TQ+ P E+ +LL+++IGAIV+ R Sbjct: 120 SWSSITLITESKKFLNFDFTQNVQRIGYLLLTQFLLPFELLSIVLLVALIGAIVIARREN 179 >gi|284992916|ref|YP_003411470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geodermatophilus obscurus DSM 43160] gi|284066161|gb|ADB77099.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geodermatophilus obscurus DSM 43160] Length = 273 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 96/184 (52%), Gaps = 12/184 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+ + +V RN ++S LI + +++ A F+ + ++VY Sbjct: 10 EAVVFWVLGPIALAGALGMVMSRNAVHSALWLINTMLALGVFYVVQEAPFLGAVQIIVYT 69 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILAAELIVCASNFMVFSA 117 GA+++ FLF++M++ D + RG LG+ F ++ A + A+ + + Sbjct: 70 GAIMILFLFVLMLVGRDSSDSVVETLRGQRVAALLLGAGFAAVVGAG-VARATQDLPVAG 128 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDI 176 G + + +N+E I +LY++Y E++G +L+ + +GA+VL H R+ + + Sbjct: 129 LGAVQG--AETSNIEAIAGLLYSRYLLAFEVTGALLITAAVGALVLT--HVEREAEERRT 184 Query: 177 SKQL 180 K+L Sbjct: 185 QKEL 188 >gi|325277469|ref|ZP_08143075.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas sp. TJI-51] gi|324097398|gb|EGB95638.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas sp. TJI-51] Length = 166 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 V F+F++MML++ A ++RG+L GI A +I Sbjct: 65 VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98 >gi|167034695|ref|YP_001669926.1| NADH dehydrogenase subunit J [Pseudomonas putida GB-1] gi|166861183|gb|ABY99590.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudomonas putida GB-1] Length = 166 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 V F+F++MML++ A ++RG+L GI A +I Sbjct: 65 VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98 >gi|322417690|ref|YP_004196913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M18] gi|320124077|gb|ADW11637.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M18] Length = 161 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 88/166 (53%), Gaps = 6/166 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ FY+ + + +I + +T R + ++ L+ +F A +F LLGA +A +++Y Sbjct: 1 MEATLFYILAAVTLIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPLIAAFEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IMML++ P+ + L ++ +L +V + +V A+G+ + Sbjct: 61 AGAIMVLFLFVIMMLELGSPEKLPKPR---LSDWWPALLLVGAVV--GSVVVLVADGQPA 115 Query: 123 RLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 L F + + L+ QY +E+ LL +++GA+ L R Sbjct: 116 GLPGFVEISARQFAQTLFQQYGVAVEVISMQLLFALVGALYLGRRR 161 >gi|58219954|gb|AAW67495.1| NADH dehydrogenase subunit 6 [Fusarium oxysporum] gi|60499215|gb|AAX21838.1| NADH dehydrogenase subunit 6 [Fusarium oxysporum] Length = 223 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 43/196 (21%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++ L++ +NPI SV LI F N + +L+G F+ + L+VY+GAV + FLFI+ Sbjct: 28 ALLCGILIIINKNPIVSVIFLIGLFANISVYLILIGLTFIGLSYLIVYIGAVSILFLFIL 87 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAA------------------------------- 103 M+++I + + I ILA Sbjct: 88 MLINIRTSELQSNNRNSVSLGLLITILANFTIFQVLPYYMAILNNYSSKLNTILYYLPWN 147 Query: 104 -----------ELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152 L + +N M S+ + + G + IG +LYT + + ++ FI Sbjct: 148 KFSDILKYINRNLDITNANIMFVSSNSWDNNMAETG-HTATIGHILYTSHNMWIFMASFI 206 Query: 153 LLLSMIGAIVLMLRHR 168 LLL+M+GAI++ ++ + Sbjct: 207 LLLAMVGAIIITIKGK 222 >gi|326799614|ref|YP_004317433.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobacterium sp. 21] gi|326550378|gb|ADZ78763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobacterium sp. 21] Length = 183 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 18/179 (10%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L FY+ +F A+ S+ L+V+++N + S+F AGL++ A+FVA+ ++VYVG Sbjct: 6 LLFYVLAFTAVGSAILIVSMKNLVRSLFLFFVTLFAVAGLYVFALADFVAVTQVIVYVGG 65 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV-------------CASNF 112 V+V LF M+ + +V + GF G F I A ++ A+N Sbjct: 66 VLVLMLFAFMLSN---KVLLNDLQSGFKGVFSIPSWQAGMVSLALFTVLLTVVWQVATNQ 122 Query: 113 MVFSAEGELSRLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + +L+ + N + ++G L T++ P E+ L+++++GA L + +R Sbjct: 123 PQWITDAKEKQLLIQHHDNTIHHLGINLMTRFILPFEVVSIFLMMALMGAAHLARKEKR 181 >gi|317492615|ref|ZP_07951042.1| NADH-ubiquinone/plastoquinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919365|gb|EFV40697.1| NADH-ubiquinone/plastoquinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 192 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 102/193 (52%), Gaps = 14/193 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V++ NP++++ LI + + A +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVISHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG---ILAAELIVCASNFMVFSAEGELSR 123 V F+F++MML++ V E ++R +L S +IG + L V M + +G Sbjct: 65 VLFVFVVMMLNLGNSVVE--QERAWLKPSLWIGPSLLSLILLAVLVYAIMSVNDQGISGD 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 ++ + + +G L+ Y +E+ +LL ++ A + H++ + SK E+ Sbjct: 123 MI----DAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHKQG---EVFSKTPETE 175 Query: 184 PDNSIVM-VKVKS 195 + + M VK K+ Sbjct: 176 ANKAKAMAVKNKA 188 >gi|49147020|ref|YP_025876.1| NADH dehydrogenase subunit 6 [Moniliophthora perniciosa] gi|34538665|gb|AAQ74273.1| NADH dehydrogenase subunit 6 [Moniliophthora perniciosa] Length = 207 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 52/80 (65%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L + +F ++SS +T +NP+ SV LI FV +AG +L+G F+ + ++VY Sbjct: 1 MTTLLINILAFATLLSSIFSITSKNPVISVLFLIGTFVLSAGYLILIGINFIGISYIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIE 82 VGA+ V FLF+IMM++I + Sbjct: 61 VGAIAVLFLFVIMMINIKLT 80 >gi|197285612|ref|YP_002151484.1| NADH dehydrogenase subunit J [Proteus mirabilis HI4320] gi|227356115|ref|ZP_03840505.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis ATCC 29906] gi|194683099|emb|CAR43656.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis HI4320] gi|227163760|gb|EEI48672.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis ATCC 29906] Length = 177 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 10/171 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ ++I+++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAGLISILATLRVITHTNPVHALLYLIVSLIGLSVVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLV 125 V F+F++MML++ V E ++++ F+IG L++ S+ GE+S + Sbjct: 65 VLFVFVVMMLNLGKSVVE-QERKWLQPRFWIGPAILSLVLLIVLVYAISSVTHGEISGEI 123 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +G L+ Y +E++ +LL +I A + RD D+ Sbjct: 124 I---GAKEVGISLFGPYILAVELASVLLLSGLIVAYHI----GRDQSHDDL 167 >gi|124112063|ref|YP_001019164.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chlorokybus atmophyticus] gi|221272346|sp|Q19V56|NU6C_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|124012179|gb|ABD62195.2| subunit 6 of NADH-plastoquinone oxidoreductase [Chlorokybus atmophyticus] Length = 214 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 21/200 (10%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 SLFF ++ + VV + N +YS F L ++ AG++LLL A+FVA +++YVG Sbjct: 11 SLFF--LEGAVLVGALGVVLLPNILYSAFLLGGVLMSIAGIYLLLNADFVAAAQVLIYVG 68 Query: 65 AVIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGI----LAAELI------------V 107 A+ V LF IM+++ D VA + + IG+ LA LI V Sbjct: 69 AINVLILFAIMLVNKNDGRVAAGTSNSSGVTNNIIGLTCIGLAGFLIDMIVTTPWLPKGV 128 Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + A+ ++ KG ++ IG +++ + P E+ +LL++++GAIV+ R Sbjct: 129 AVATSLSAKADSTAAQTQLKG-SISIIGLHIFSDFLLPFEVISLLLLVTLVGAIVIARRE 187 Query: 168 R-RDIKRQDISKQLESNPDN 186 R D++ IS +P N Sbjct: 188 RLSDLEISKISLLNLPDPSN 207 >gi|170767399|ref|ZP_02901852.1| NADH-quinone oxidoreductase, J subunit [Escherichia albertii TW07627] gi|170123733|gb|EDS92664.1| NADH-quinone oxidoreductase, J subunit [Escherichia albertii TW07627] Length = 184 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 104/186 (55%), Gaps = 21/186 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ +E ++R +L +IG IL+A ++V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G V + +G L+ Y +E++ +LL ++ A + R++ + ++ S Sbjct: 118 GIDGTPVSAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREEHAGEVLS 169 Query: 183 N-PDNS 187 N D+S Sbjct: 170 NRKDDS 175 >gi|159899733|ref|YP_001545980.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Herpetosiphon aurantiacus ATCC 23779] gi|159892772|gb|ABX05852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Herpetosiphon aurantiacus ATCC 23779] Length = 174 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 12/178 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ F + +A+ ++ +V N ++S LI F + A L+ LL A F+ + + VY Sbjct: 1 METFLFITTAIVAVGAALAMVLSSNAVHSALFLILNFCSVAILYFLLRAPFLGAVQVTVY 60 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGE 120 GA++V FLF+IM+L + E+ E + +G+ L AE+ ++ + Sbjct: 61 AGAIMVLFLFVIMLLGAENAELGEEKIGWQKPAGLVLGVALLAEI-----GYVAYRGTTL 115 Query: 121 LSRLVFKGNNV---ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + V N+ I L++ Y P E+ +LL++++G +V L RR + R++ Sbjct: 116 IDAPVADATNIGAPTTISAKLFSTYLLPFEVISILLLIAVVGTVV--LTRRRVVAREE 171 >gi|75908928|ref|YP_323224.1| NADH dehydrogenase subunit J [Anabaena variabilis ATCC 29413] gi|75702653|gb|ABA22329.1| NADH dehydrogenase subunit J [Anabaena variabilis ATCC 29413] Length = 202 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 5/195 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M I ++ VV + +YS F L F++ AG++LLL +FVA ++VY Sbjct: 7 VQVVSFGILATMLIGTALGVVLASSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + P G + I++ L S MV + S Sbjct: 67 VGAVNVLILFAIMLVNKRQDFI-PYPSAG-IRKILTAIVSVGLFALLST-MVLATPWAYS 123 Query: 123 RLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQL 180 G+ ++ IG+ ++ + P E++ +LL++M+GAI+L R + ++ D+ + + Sbjct: 124 TTPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARREYLPEVTPSDLPQTV 183 Query: 181 ESNPDNSIVMVKVKS 195 + P+ +V S Sbjct: 184 LTLPERPRELVGAGS 198 >gi|253729607|ref|YP_003029792.1| NdhG [Bambusa oldhamii] gi|255961434|ref|YP_003097629.1| NADH-plastoquinone oxidoreductase subunit 6 [Dendrocalamus latiflorus] gi|246367117|gb|ACS94728.1| NdhG [Bambusa oldhamii] gi|255040311|gb|ACT99971.1| NADH-plastoquinone oxidoreductase subunit 6 [Dendrocalamus latiflorus] Length = 176 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 14/152 (9%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + NPIYS FSL + + ++LL + FVA+ L++YVGA+ V +F +M +D Sbjct: 26 VVLLTNPIYSAFSLGLVLICISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFID--- 82 Query: 82 EVAEPRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNV 131 +E K + + +G F ++ ++ + +++ +++V +G NNV Sbjct: 83 -GSEWSKNKNYWTIGDGFTSLVCITILFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNV 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + IG L T + P E+ ILL+S+IGAI + Sbjct: 142 QQIGIHLATDFYLPFELISIILLVSLIGAITM 173 >gi|238759970|ref|ZP_04621123.1| NADH-quinone oxidoreductase subunit J [Yersinia aldovae ATCC 35236] gi|238701797|gb|EEP94361.1| NADH-quinone oxidoreductase subunit J [Yersinia aldovae ATCC 35236] Length = 181 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 93/169 (55%), Gaps = 19/169 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG------ILAAELIVCASNFMVFSAEG 119 V F+F++MML++ ++E +++R +L S +IG +L + LI S+ G Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIGPGILALVLLSVLIYAISSVSDQGISG 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 E+ + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 121 EMV-------DAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHK 162 >gi|283850898|ref|ZP_06368184.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio sp. FW1012B] gi|283573821|gb|EFC21795.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio sp. FW1012B] Length = 172 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 9/150 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FYL + + + ++ L T RNP+++V + F+ AAG+F++LGA ++ +V Sbjct: 1 MTALGALFYLLAAVLLGAAVLTATRRNPMHAVCCAVITFLAAAGMFVVLGAPLPGVLEVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V FLFIIM+L + R R G+LAA +V + F + A+ Sbjct: 61 VYAGAIMVLFLFIIMLLGLSAGTGPVRAGR----LVVPGVLAAASLV--ALFALIGAD-P 113 Query: 121 LSRLVFKG--NNVENIGKVLYTQYAYPLEI 148 R + + +G VL+ Y +E+ Sbjct: 114 AGRTMLPAAIASPAAVGTVLFDAYWLAVEV 143 >gi|294637171|ref|ZP_06715479.1| NADH-quinone oxidoreductase, J subunit [Edwardsiella tarda ATCC 23685] gi|291089635|gb|EFE22196.1| NADH-quinone oxidoreductase, J subunit [Edwardsiella tarda ATCC 23685] Length = 190 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 57/86 (66%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + A +F LGA F + ++VY GA++ Sbjct: 5 FYVAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ V E ++R +L Sbjct: 65 VLFVFVVMMLNLGNSVVE--QERAWL 88 >gi|240169661|ref|ZP_04748320.1| NADH dehydrogenase subunit J [Mycobacterium kansasii ATCC 12478] Length = 264 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 92/179 (51%), Gaps = 4/179 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + VV N +YS L + A +++ A F+ ++ +VVY Sbjct: 25 EAVTFWILGALALIGALAVVLAVNAVYSAMFLAMTMIILAVFYMVQDALFLGVVQVVVYT 84 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV++ FLF++M++ +D + RG + + GI L+V + L+ Sbjct: 85 GAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVGTGIGFGILLVGGIGNVATGGFAGLT 144 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G NVE + +++ +Y + E++ +L+ + IGA+VL HR +R+ ++L Sbjct: 145 AANANG-NVEGLAALIFFRYLWAFELTSALLITAAIGAMVLA--HRERFERRKTQRELS 200 >gi|300782460|ref|YP_003762751.1| NADH dehydrogenase I subunit J [Amycolatopsis mediterranei U32] gi|299791974|gb|ADJ42349.1| NADH dehydrogenase I subunit J [Amycolatopsis mediterranei U32] Length = 291 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/178 (23%), Positives = 92/178 (51%), Gaps = 13/178 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ ++++ + ++ RN ++S L+ ++ L+++ A F+ ++VY Sbjct: 20 EAIAFWVLGPVSLLGALGMIFSRNAVHSALWLVLTMLSLGALYMIQSAPFLGFTQIIVYT 79 Query: 64 GAVIVFFLFIIMML-----DIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFS 116 GA+++ FLF++M++ D +EV R +R L + +GI A L+ + Sbjct: 80 GAIMMLFLFVLMLVGRESSDSVVEVL--RGQR--LAATVLGIGLAALLATGIYRALENVT 135 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRRDIK 172 L G + +G++++T Y +P E++ +L+ + IGA+VL RH + K Sbjct: 136 PAIPLDSATPAGGGPKGLGRLIFTDYLFPFELTSALLITAAIGAMVLAFTDRHGKGGK 193 >gi|301165397|emb|CBW24968.1| putative NADH dehydrogenase chain J [Bacteriovorax marinus SJ] Length = 174 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 17/177 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F L + + + ++ VV RN +++ L+ + AGL+ LGA+F+A +VVY G Sbjct: 4 NIMFILSALLTLAGAYGVVASRNIMHACVYLLASLFGIAGLYATLGADFLAATQMVVYAG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPR------KKRGFLGSFFIGILAAELIVCASNFMVFSA- 117 V++ LF IM+ E A R G + +F IG L+A L++ + F + + Sbjct: 64 GVVILMLFAIMLTGGHKE-AMNRFGINKIPSMGTVRTFVIGTLSA-LVLGSVAFKIIAGM 121 Query: 118 ----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 GEL VE +G +L T + EIS +LL +++GA V+ R R+ Sbjct: 122 TKHVPGELPEFT---TTVEKLGVLLLTDHILAFEISSVLLLGALVGAAVIS-RPRKQ 174 >gi|104782529|ref|YP_609027.1| NADH dehydrogenase subunit J [Pseudomonas entomophila L48] gi|95111516|emb|CAK16236.1| NADH dehydrogenase I chain J [Pseudomonas entomophila L48] Length = 166 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y GA++ Sbjct: 5 FYFASGVAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 V F+F++MML++ A ++RG+L GI A +I Sbjct: 65 VLFVFVVMMLNLG--PASVAQERGWLKP---GIWAGPVI 98 >gi|242092568|ref|XP_002436774.1| hypothetical protein SORBIDRAFT_10g008595 [Sorghum bicolor] gi|241914997|gb|EER88141.1| hypothetical protein SORBIDRAFT_10g008595 [Sorghum bicolor] Length = 103 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 54/87 (62%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL +LL +F AMI VV++GA+++ FLF++ Sbjct: 9 ALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLDLDFSAMIFPVVHIGAIVISFLFVV 68 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGIL 101 MM +I I R L S IG++ Sbjct: 69 MMFNIQIAEIHEEVLRYLLVSGIIGLI 95 >gi|268627910|gb|ACZ13377.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1b] gi|268627913|gb|ACZ13379.1| NADH dehydrogenase subunit 6 [Keratoisis sp. B1c] Length = 70 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 52/71 (73%), Gaps = 1/71 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVY 59 Query: 63 VGAVIVFFLFI 73 VGA+ + FLF+ Sbjct: 60 VGAIAILFLFV 70 >gi|320196147|gb|EFW70771.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli WV_060327] Length = 184 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 104/186 (55%), Gaps = 21/186 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ +E ++R +L +IG IL+A ++V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G V + +G L+ Y +E++ +LL ++ A + R++ + ++ S Sbjct: 118 GIDGTPVSAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169 Query: 183 N-PDNS 187 N D+S Sbjct: 170 NRKDDS 175 >gi|239905973|ref|YP_002952712.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio magneticus RS-1] gi|239795837|dbj|BAH74826.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio magneticus RS-1] Length = 174 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 50/80 (62%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FYLF+ + + ++ L T RNP+++V + F++ + +LGA +++T+V Sbjct: 1 MTPLGALFYLFAALGLGAAVLTATRRNPVHAVCCAVAVFLSVGAMLAVLGAPLPSVLTVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID 80 VY GA++V FLF+IM+L + Sbjct: 61 VYAGAIMVLFLFVIMLLGLP 80 >gi|321271265|gb|ADW79436.1| NADH dehydrogenase subunit 6 [Glomerella lindemuthiana] Length = 231 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 51/208 (24%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S AI+ + L + +NPI SV LI F + + +LLG F+ + L+VY+GAV + FL Sbjct: 24 SVFAILCAILTIVSKNPIVSVLFLIGLFGSVSSYLILLGLNFIGLSYLIVYIGAVSILFL 83 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--------------------VCASN 111 FI+M+++I + + K + FI IL L+ V A N Sbjct: 84 FILMLINIRVSELQSNTKNSIPLALFITILFNYLVFQFLPYDLAILNNSNKGGSQVAALN 143 Query: 112 FMVFS-------AEGELSRLV------------------------FKGNNVENIGKVLYT 140 +++ AE E S +V +K +++ IG +LYT Sbjct: 144 NVLYHSSLASPFAERENSSIVKYQIYTVVIQIYCLQQVVGEMEIYYKPSHISTIGNILYT 203 Query: 141 QYAYPLEISGFILLLSMIGAIVLMLRHR 168 ++ L ++ FILLL+MIGAIV+ ++ + Sbjct: 204 SHSMWLLLASFILLLAMIGAIVITIKQK 231 >gi|11466192|ref|NP_066515.1| NADH dehydrogenase subunit 6 [Naegleria gruberi] gi|10444227|gb|AAG17793.1|AF288092_18 NADH dehydrogenase subunit 6 [Naegleria gruberi] Length = 201 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 51/71 (71%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 + F F+AIIS+ +V V NPI +V LI F N + +F+LL +F+ ++ L++YVGA+ V Sbjct: 6 FFFYFLAIISAICMVIVINPINAVLFLISVFFNTSMIFILLNVDFMGLLFLMIYVGAIAV 65 Query: 69 FFLFIIMMLDI 79 FLFI+MML+I Sbjct: 66 LFLFIVMMLNI 76 >gi|126666312|ref|ZP_01737291.1| NADH dehydrogenase subunit J [Marinobacter sp. ELB17] gi|126629113|gb|EAZ99731.1| NADH dehydrogenase subunit J [Marinobacter sp. ELB17] Length = 176 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 4/92 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A++++ V++ NP++ V L+ + + A +F LGA F + ++VY GA++ Sbjct: 5 FYLSGLVAVLATLGVISNTNPVHGVLYLVVSLLAVAMVFFALGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPR---KKRGFLGS 95 V F+F++MML++ + VA+ R + R +LG Sbjct: 65 VLFVFVVMMLNLGETAVAQERIWLQPRTWLGP 96 >gi|271962240|ref|YP_003336436.1| NADH-ubiquinone oxidoreductase protein, chain J [Streptosporangium roseum DSM 43021] gi|270505415|gb|ACZ83693.1| putative NADH-ubiquinone oxidoreductase protein, chain J [Streptosporangium roseum DSM 43021] Length = 178 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 10/174 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F L +A+ S+ LVVT R +++ L+ F AG +L+L AEFVA + +++YV Sbjct: 13 QEIVFLLLGAVAVGSALLVVTTRQLVHAALWLVVCFGALAGGYLVLTAEFVAWVQVLIYV 72 Query: 64 GAVIVFFLFIIMMLDIDI-EVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++ LF IM+ I A+ + R I A + V F A E Sbjct: 73 GAIVALLLFGIMLTRAPIGRTADLDSRNRPAAAVVAIATAAVLVTVVIDGFRTAYAPLEP 132 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + + +G ++ + P E +LL +++GAIVL R DI+ +D Sbjct: 133 G-----GGSAKELGSSIFRNWVLPFEALSVLLLAALVGAIVL---SRTDIRGRD 178 >gi|297616448|ref|YP_003701607.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Syntrophothermus lipocalidus DSM 12680] gi|297144285|gb|ADI01042.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Syntrophothermus lipocalidus DSM 12680] Length = 166 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 5/164 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FY+ + + + + VV N + + F L+ +F+ A L+ LLGA+F+ ++ ++ Sbjct: 1 MTWEAVTFYILAVVTVTGAAGVVFSSNIVRAAFFLVASFLGVAALYFLLGADFLGLVQIM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEG 119 +Y GAV V +F +M++ D + R+ F S + G A L+ A V+ Sbjct: 61 IYAGAVSVLVIFAVMLVIKD----DIRRTSLFHPVSRWWGAAIAVLLTTALGKAVWQTSF 116 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 L + + V + K+L Y E++ +LL++++GAI+L Sbjct: 117 PAKGLAVETDRVGQMAKLLLGDYVVAFEVAAVLLLVAIVGAIIL 160 >gi|186685675|ref|YP_001868871.1| NADH dehydrogenase subunit J [Nostoc punctiforme PCC 73102] gi|186468127|gb|ACC83928.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nostoc punctiforme PCC 73102] Length = 204 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE-VAEPR 87 +YS F L F++ AG++LLL +FVA +++YVGAV V LF IM+++ + VA P Sbjct: 33 VYSAFMLGGVFISMAGIYLLLNGDFVAAAQILIYVGAVNVLILFAIMLVNKRQDFVAFPN 92 Query: 88 KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-NNVENIGKVLYTQYAYPL 146 ++ G+++ L S ++ + + V G +++ IG+ +T + P Sbjct: 93 S---WVRKLLTGLVSVGLFGLLSTMVLATPWAYSTTPVVGGESSIVVIGEHFFTDFLLPF 149 Query: 147 EISGFILLLSMIGAIVLMLRH--RRDIKRQDISK---QLESNP 184 E++ +LL++M+GAI+L R + R ++ + L+ P Sbjct: 150 ELASILLLIAMVGAIILARREYLPDQLTRSNVGQTVLTLQERP 192 >gi|330470208|ref|YP_004407951.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Verrucosispora maris AB-18-032] gi|328813179|gb|AEB47351.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Verrucosispora maris AB-18-032] Length = 204 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A+ S LVV+ R+ + + L+ AG++L+L AE VA + +++YVGAV+V LF Sbjct: 14 VAVGSGVLVVSTRHLVRAGLYLVVCLGAVAGMYLVLTAELVAWVQVLIYVGAVVVLLLFA 73 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133 +M+ I ++ + G+ + G + L + ++ EL + E Sbjct: 74 VMLTRAPIGASDDLDRPGWPAALIGGGVGLGLAALLIDAFRWTTV-ELP----EAGTAER 128 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 IG+ ++ + P E+ +LL +++GAIVL R DI R Sbjct: 129 IGEQVFASWVLPFEVLSILLLSALVGAIVL---SRPDIGR 165 >gi|149374619|ref|ZP_01892393.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] gi|149361322|gb|EDM49772.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] Length = 180 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 59/94 (62%), Gaps = 5/94 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L FY+ +A++++ V+T +P+++V LI + + A +F LGA F + ++VY GA Sbjct: 3 LAFYVCGLVAVLATIGVITGTSPVHAVVYLIVSLIAVALVFFALGAPFAGALEIIVYAGA 62 Query: 66 VIVFFLFIIMMLDI--DIEVAEP--RKKRGFLGS 95 ++V F+F++MML++ D E EP R R ++G Sbjct: 63 IMVLFVFVVMMLNLRSDAE-QEPSWRNPRHWVGP 95 >gi|15806508|ref|NP_295219.1| NADH dehydrogenase I subunit J [Deinococcus radiodurans R1] gi|6459253|gb|AAF11059.1|AE001993_9 NADH dehydrogenase I, J subunit [Deinococcus radiodurans R1] Length = 205 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 5/167 (2%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V +N +++ L+ + AGLF + A F+A ++VY GA++V FLF+IM+L Sbjct: 19 TVAAKNAVHAALGLVGTLICVAGLFASMNASFLAATQVIVYAGAIMVLFLFVIMLLGASQ 78 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV--FKGNNVENIGKVLY 139 + R F+G + + + L+ V +G +G+ L Sbjct: 79 PITA-RDPLPFVGPLGAIAALLLAGGFVTLALTYQDPRPLAESVQALRGGAAGAVGETLL 137 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR--HRRDIKRQDISKQLESNP 184 T++ P E +LL++++G++ L+ R + D + +L P Sbjct: 138 TRFLLPFEAVSILLLVAIVGSVTLVQRPVPQPDGVTDETGAELPPAP 184 >gi|11465891|ref|NP_066440.1| NADH dehydrogenase subunit 6 [Ochromonas danica] gi|10505224|gb|AAG18406.1|AF287134_31 NADH dehydrogenase subunit 6 [Ochromonas danica] Length = 205 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 35/192 (18%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV +PI SV LI AF A + L +F ++ +++YVGA+ V FLF++MML+I + Sbjct: 19 VVFSTSPIESVLFLILAFCIAGIILFLFNLDFFGIMFIIIYVGAIAVLFLFVVMMLNIKL 78 Query: 82 EVAEPRKKRGFLGSF------------------FIGILAAELIVCASNFMVFSAEGELSR 123 + FL F F+ + + I +F+++ S Sbjct: 79 Q-------YNFLDRFTFKNIVYILIVLLLLYTIFLNLYSQIFIEMP---FLFNSDLLYSY 128 Query: 124 LVF-KG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + KG +N++ G+VLY ++ + ++GFILL++++G IVL L H K +++ Sbjct: 129 TIIEKGIFDHLSNIKVFGQVLYNYFSLYVPLAGFILLIALVGVIVLTL-HFNKFKNKELD 187 Query: 178 KQLESNPDNSIV 189 + S DN IV Sbjct: 188 FRQLSRSDNFIV 199 >gi|27464565|gb|AAO16136.1| NADH dehydrogenase subunit 6 [Alcyonium variabile] Length = 147 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 7/144 (4%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+E IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185 +L + + S+ L S D Sbjct: 114 LLAKQPNSPVLYNSHSESLRSRQD 137 >gi|15802827|ref|NP_288854.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 EDL933] gi|15832418|ref|NP_311191.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str. Sakai] gi|16130215|ref|NP_416783.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K-12 substr. MG1655] gi|24113652|ref|NP_708162.1| NADH dehydrogenase subunit J [Shigella flexneri 2a str. 301] gi|26248667|ref|NP_754707.1| NADH dehydrogenase subunit J [Escherichia coli CFT073] gi|30063706|ref|NP_837877.1| NADH dehydrogenase subunit J [Shigella flexneri 2a str. 2457T] gi|74312798|ref|YP_311217.1| NADH dehydrogenase subunit J [Shigella sonnei Ss046] gi|82544758|ref|YP_408705.1| NADH dehydrogenase subunit J [Shigella boydii Sb227] gi|82777688|ref|YP_404037.1| NADH dehydrogenase subunit J [Shigella dysenteriae Sd197] gi|89109098|ref|AP_002878.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K-12 substr. W3110] gi|91211572|ref|YP_541558.1| NADH dehydrogenase subunit J [Escherichia coli UTI89] gi|110642484|ref|YP_670214.1| NADH dehydrogenase subunit J [Escherichia coli 536] gi|110806243|ref|YP_689763.1| NADH dehydrogenase subunit J [Shigella flexneri 5 str. 8401] gi|117624469|ref|YP_853382.1| NADH dehydrogenase subunit J [Escherichia coli APEC O1] gi|157157709|ref|YP_001463623.1| NADH dehydrogenase subunit J [Escherichia coli E24377A] gi|157161768|ref|YP_001459086.1| NADH dehydrogenase subunit J [Escherichia coli HS] gi|168748129|ref|ZP_02773151.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4113] gi|168755032|ref|ZP_02780039.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4401] gi|168761281|ref|ZP_02786288.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4501] gi|168767906|ref|ZP_02792913.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4486] gi|168772994|ref|ZP_02798001.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4196] gi|168780135|ref|ZP_02805142.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4076] gi|168787187|ref|ZP_02812194.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC869] gi|168798450|ref|ZP_02823457.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC508] gi|170019411|ref|YP_001724365.1| NADH dehydrogenase subunit J [Escherichia coli ATCC 8739] gi|170081897|ref|YP_001731217.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K-12 substr. DH10B] gi|170681867|ref|YP_001744478.1| NADH dehydrogenase subunit J [Escherichia coli SMS-3-5] gi|187731180|ref|YP_001881101.1| NADH dehydrogenase subunit J [Shigella boydii CDC 3083-94] gi|188491681|ref|ZP_02998951.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 53638] gi|191166504|ref|ZP_03028334.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B7A] gi|191170098|ref|ZP_03031652.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli F11] gi|193062313|ref|ZP_03043408.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E22] gi|193068217|ref|ZP_03049181.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E110019] gi|194427097|ref|ZP_03059648.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B171] gi|194433331|ref|ZP_03065611.1| NADH-quinone oxidoreductase, J subunit [Shigella dysenteriae 1012] gi|194436249|ref|ZP_03068351.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 101-1] gi|195935657|ref|ZP_03081039.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str. EC4024] gi|208807034|ref|ZP_03249371.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4206] gi|208812963|ref|ZP_03254292.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4045] gi|208818254|ref|ZP_03258574.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4042] gi|209397133|ref|YP_002271689.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4115] gi|209919728|ref|YP_002293812.1| NADH dehydrogenase subunit J [Escherichia coli SE11] gi|215487493|ref|YP_002329924.1| NADH dehydrogenase subunit J [Escherichia coli O127:H6 str. E2348/69] gi|217327964|ref|ZP_03444047.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. TW14588] gi|218548271|ref|YP_002382062.1| NADH dehydrogenase subunit J [Escherichia fergusonii ATCC 35469] gi|218554836|ref|YP_002387749.1| NADH dehydrogenase subunit J [Escherichia coli IAI1] gi|218559193|ref|YP_002392106.1| NADH dehydrogenase subunit J [Escherichia coli S88] gi|218690440|ref|YP_002398652.1| NADH dehydrogenase subunit J [Escherichia coli ED1a] gi|218695879|ref|YP_002403546.1| NADH dehydrogenase subunit J [Escherichia coli 55989] gi|218700754|ref|YP_002408383.1| NADH dehydrogenase subunit J [Escherichia coli IAI39] gi|218705810|ref|YP_002413329.1| NADH dehydrogenase subunit J [Escherichia coli UMN026] gi|227887336|ref|ZP_04005141.1| NADH dehydrogenase subunit J [Escherichia coli 83972] gi|237704754|ref|ZP_04535235.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|238901455|ref|YP_002927251.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli BW2952] gi|253772798|ref|YP_003035629.1| NADH dehydrogenase subunit J [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162289|ref|YP_003045397.1| NADH dehydrogenase subunit J [Escherichia coli B str. REL606] gi|254794172|ref|YP_003079009.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str. TW14359] gi|256017564|ref|ZP_05431429.1| NADH dehydrogenase subunit J [Shigella sp. D9] gi|256022036|ref|ZP_05435901.1| NADH dehydrogenase subunit J [Escherichia sp. 4_1_40B] gi|260844867|ref|YP_003222645.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O103:H2 str. 12009] gi|260856324|ref|YP_003230215.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O26:H11 str. 11368] gi|260869003|ref|YP_003235405.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O111:H- str. 11128] gi|261223266|ref|ZP_05937547.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O157:H7 str. FRIK2000] gi|261259184|ref|ZP_05951717.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O157:H7 str. FRIK966] gi|293405746|ref|ZP_06649738.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1412] gi|293410640|ref|ZP_06654216.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B354] gi|293446617|ref|ZP_06663039.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B088] gi|297518347|ref|ZP_06936733.1| NADH dehydrogenase subunit J [Escherichia coli OP50] gi|298381429|ref|ZP_06991028.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1302] gi|300818120|ref|ZP_07098332.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 107-1] gi|300822151|ref|ZP_07102293.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 119-7] gi|300896954|ref|ZP_07115435.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 198-1] gi|300903665|ref|ZP_07121581.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 84-1] gi|300918555|ref|ZP_07135145.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 115-1] gi|300924539|ref|ZP_07140503.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 182-1] gi|300936844|ref|ZP_07151733.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 21-1] gi|300948576|ref|ZP_07162669.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 116-1] gi|300956460|ref|ZP_07168749.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 175-1] gi|300981078|ref|ZP_07175350.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 200-1] gi|300983375|ref|ZP_07176559.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 45-1] gi|301024078|ref|ZP_07187792.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 69-1] gi|301026950|ref|ZP_07190343.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 196-1] gi|301049033|ref|ZP_07196018.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 185-1] gi|301303261|ref|ZP_07209386.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 124-1] gi|301328772|ref|ZP_07221820.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 78-1] gi|301647623|ref|ZP_07247419.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 146-1] gi|306814609|ref|ZP_07448771.1| NADH dehydrogenase subunit J [Escherichia coli NC101] gi|307138944|ref|ZP_07498300.1| NADH dehydrogenase subunit J [Escherichia coli H736] gi|307311160|ref|ZP_07590804.1| NADH dehydrogenase (quinone) [Escherichia coli W] gi|309785016|ref|ZP_07679649.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella dysenteriae 1617] gi|309793159|ref|ZP_07687587.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 145-7] gi|312967578|ref|ZP_07781793.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 2362-75] gi|312973461|ref|ZP_07787633.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 1827-70] gi|331642918|ref|ZP_08344053.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H736] gi|331647935|ref|ZP_08349027.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli M605] gi|331653722|ref|ZP_08354723.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli M718] gi|331658360|ref|ZP_08359322.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA206] gi|331663794|ref|ZP_08364704.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA143] gi|331668978|ref|ZP_08369826.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA271] gi|331673785|ref|ZP_08374548.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA280] gi|331678226|ref|ZP_08378901.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H591] gi|331683952|ref|ZP_08384548.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H299] gi|332278574|ref|ZP_08390987.1| NADH:ubiquinone oxidoreductase membrane subunit J [Shigella sp. D9] gi|84028757|sp|P0AFE2|NUOJ_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J; AltName: Full=NUO10 gi|84028758|sp|P0AFE1|NUOJ_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J; AltName: Full=NUO10 gi|84028759|sp|P0AFE0|NUOJ_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J; AltName: Full=NUO10 gi|84028760|sp|P0AFE3|NUOJ_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|12516630|gb|AAG57409.1|AE005460_3 NADH dehydrogenase I chain J [Escherichia coli O157:H7 str. EDL933] gi|26109072|gb|AAN81275.1|AE016763_234 NADH dehydrogenase I chain J [Escherichia coli CFT073] gi|1788616|gb|AAC75340.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K-12 substr. MG1655] gi|1799640|dbj|BAA16108.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K12 substr. W3110] gi|13362634|dbj|BAB36587.1| NADH dehydrogenase I chain J [Escherichia coli O157:H7 str. Sakai] gi|24052716|gb|AAN43869.1| NADH dehydrogenase I chain J [Shigella flexneri 2a str. 301] gi|30041961|gb|AAP17687.1| NADH dehydrogenase I chain J [Shigella flexneri 2a str. 2457T] gi|73856275|gb|AAZ88982.1| NADH dehydrogenase I chain J [Shigella sonnei Ss046] gi|81241836|gb|ABB62546.1| NADH dehydrogenase I chain J [Shigella dysenteriae Sd197] gi|81246169|gb|ABB66877.1| NADH dehydrogenase I chain J [Shigella boydii Sb227] gi|91073146|gb|ABE08027.1| NADH dehydrogenase I chain J [Escherichia coli UTI89] gi|110344076|gb|ABG70313.1| NADH dehydrogenase I chain J [Escherichia coli 536] gi|110615791|gb|ABF04458.1| NADH dehydrogenase I chain J [Shigella flexneri 5 str. 8401] gi|115513593|gb|ABJ01668.1| NADH dehydrogenase I chain J [Escherichia coli APEC O1] gi|157067448|gb|ABV06703.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli HS] gi|157079739|gb|ABV19447.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E24377A] gi|169754339|gb|ACA77038.1| NADH dehydrogenase (quinone) [Escherichia coli ATCC 8739] gi|169889732|gb|ACB03439.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K-12 substr. DH10B] gi|170519585|gb|ACB17763.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli SMS-3-5] gi|187428172|gb|ACD07446.1| NADH-quinone oxidoreductase, J subunit [Shigella boydii CDC 3083-94] gi|187771333|gb|EDU35177.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4196] gi|188017289|gb|EDU55411.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4113] gi|188486880|gb|EDU61983.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 53638] gi|189002049|gb|EDU71035.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4076] gi|189357621|gb|EDU76040.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4401] gi|189363001|gb|EDU81420.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4486] gi|189368227|gb|EDU86643.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4501] gi|189372886|gb|EDU91302.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC869] gi|189378912|gb|EDU97328.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC508] gi|190903464|gb|EDV63183.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B7A] gi|190909614|gb|EDV69199.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli F11] gi|192931979|gb|EDV84578.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E22] gi|192958496|gb|EDV88935.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E110019] gi|194414718|gb|EDX30989.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B171] gi|194418425|gb|EDX34514.1| NADH-quinone oxidoreductase, J subunit [Shigella dysenteriae 1012] gi|194424977|gb|EDX40962.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 101-1] gi|208726835|gb|EDZ76436.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4206] gi|208734240|gb|EDZ82927.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4045] gi|208738377|gb|EDZ86059.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4042] gi|209158533|gb|ACI35966.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4115] gi|209765148|gb|ACI80886.1| NADH dehydrogenase I chain J [Escherichia coli] gi|209765150|gb|ACI80887.1| NADH dehydrogenase I chain J [Escherichia coli] gi|209765152|gb|ACI80888.1| NADH dehydrogenase I chain J [Escherichia coli] gi|209765156|gb|ACI80890.1| NADH dehydrogenase I chain J [Escherichia coli] gi|209912987|dbj|BAG78061.1| NADH dehydrogenase I chain J [Escherichia coli SE11] gi|215265565|emb|CAS09968.1| NADH: ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O127:H6 str. E2348/69] gi|217320331|gb|EEC28756.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. TW14588] gi|218352611|emb|CAU98392.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli 55989] gi|218355812|emb|CAQ88425.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia fergusonii ATCC 35469] gi|218361604|emb|CAQ99196.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli IAI1] gi|218365962|emb|CAR03706.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli S88] gi|218370740|emb|CAR18553.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli IAI39] gi|218428004|emb|CAR08775.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli ED1a] gi|218432907|emb|CAR13801.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli UMN026] gi|222034036|emb|CAP76777.1| NadH-quinone oxidoreductase subunit J [Escherichia coli LF82] gi|226901120|gb|EEH87379.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|227835686|gb|EEJ46152.1| NADH dehydrogenase subunit J [Escherichia coli 83972] gi|238861875|gb|ACR63873.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli BW2952] gi|242377913|emb|CAQ32682.1| NADH:ubiquinone oxidoreductase, membrane subunit J, subunit of NADH:ubiquinone oxidoreductase I [Escherichia coli BL21(DE3)] gi|253323842|gb|ACT28444.1| NADH dehydrogenase (quinone) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974190|gb|ACT39861.1| NADH dehydrogenase subunit J [Escherichia coli B str. REL606] gi|253978357|gb|ACT44027.1| NADH dehydrogenase subunit J [Escherichia coli BL21(DE3)] gi|254593572|gb|ACT72933.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O157:H7 str. TW14359] gi|257754973|dbj|BAI26475.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O26:H11 str. 11368] gi|257760014|dbj|BAI31511.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O103:H2 str. 12009] gi|257765359|dbj|BAI36854.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O111:H- str. 11128] gi|260448627|gb|ACX39049.1| NADH dehydrogenase (quinone) [Escherichia coli DH1] gi|281179367|dbj|BAI55697.1| NADH dehydrogenase I chain J [Escherichia coli SE15] gi|281601721|gb|ADA74705.1| NADH-quinone oxidoreductase subunit J [Shigella flexneri 2002017] gi|284922268|emb|CBG35353.1| NADH-quinone oxidoreductase chain J [Escherichia coli 042] gi|291323447|gb|EFE62875.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B088] gi|291427954|gb|EFF00981.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1412] gi|291471108|gb|EFF13592.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B354] gi|294489634|gb|ADE88390.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli IHE3034] gi|298278871|gb|EFI20385.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1302] gi|299879497|gb|EFI87708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 196-1] gi|300299142|gb|EFJ55527.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 185-1] gi|300307691|gb|EFJ62211.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 200-1] gi|300316730|gb|EFJ66514.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 175-1] gi|300359222|gb|EFJ75092.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 198-1] gi|300396734|gb|EFJ80272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 69-1] gi|300404321|gb|EFJ87859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 84-1] gi|300408541|gb|EFJ92079.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 45-1] gi|300414290|gb|EFJ97600.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 115-1] gi|300419257|gb|EFK02568.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 182-1] gi|300451924|gb|EFK15544.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 116-1] gi|300458031|gb|EFK21524.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 21-1] gi|300525281|gb|EFK46350.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 119-7] gi|300529264|gb|EFK50326.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 107-1] gi|300841435|gb|EFK69195.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 124-1] gi|300844834|gb|EFK72594.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 78-1] gi|301074250|gb|EFK89056.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 146-1] gi|305852003|gb|EFM52455.1| NADH dehydrogenase subunit J [Escherichia coli NC101] gi|306908666|gb|EFN39163.1| NADH dehydrogenase (quinone) [Escherichia coli W] gi|307554342|gb|ADN47117.1| NADH dehydrogenase I chain J [Escherichia coli ABU 83972] gi|307626184|gb|ADN70488.1| NADH dehydrogenase subunit J [Escherichia coli UM146] gi|308123445|gb|EFO60707.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 145-7] gi|308927386|gb|EFP72860.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella dysenteriae 1617] gi|309702592|emb|CBJ01920.1| NADH-quinone oxidoreductase chain J [Escherichia coli ETEC H10407] gi|310332056|gb|EFP99291.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 1827-70] gi|312287775|gb|EFR15680.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 2362-75] gi|312946898|gb|ADR27725.1| NADH dehydrogenase subunit J [Escherichia coli O83:H1 str. NRG 857C] gi|313651103|gb|EFS15502.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri 2a str. 2457T] gi|315061572|gb|ADT75899.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli W] gi|315136914|dbj|BAJ44073.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli DH1] gi|315255214|gb|EFU35182.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 85-1] gi|315285920|gb|EFU45358.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 110-3] gi|315292247|gb|EFU51599.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 153-1] gi|315298121|gb|EFU57390.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 16-3] gi|315615549|gb|EFU96181.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 3431] gi|320177162|gb|EFW52174.1| NADH-ubiquinone oxidoreductase chain J [Shigella dysenteriae CDC 74-1112] gi|320183375|gb|EFW58227.1| NADH-ubiquinone oxidoreductase chain J [Shigella flexneri CDC 796-83] gi|320192099|gb|EFW66744.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7 str. EC1212] gi|320199868|gb|EFW74457.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli EC4100B] gi|320641107|gb|EFX10586.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H7 str. G5101] gi|320646495|gb|EFX15414.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H- str. 493-89] gi|320651592|gb|EFX19972.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H- str. H 2687] gi|320657344|gb|EFX25146.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667864|gb|EFX34772.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H7 str. LSU-61] gi|323156430|gb|EFZ42585.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli EPECa14] gi|323161614|gb|EFZ47499.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli E128010] gi|323171961|gb|EFZ57605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli LT-68] gi|323176795|gb|EFZ62385.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 1180] gi|323184401|gb|EFZ69777.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 1357] gi|323187995|gb|EFZ73290.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli RN587/1] gi|323377848|gb|ADX50116.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli KO11] gi|323936570|gb|EGB32857.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli E1520] gi|323941023|gb|EGB37210.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli E482] gi|323944793|gb|EGB40859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli H120] gi|323956046|gb|EGB51799.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli H263] gi|323961463|gb|EGB57073.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli H489] gi|323967721|gb|EGB63133.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli M863] gi|323973015|gb|EGB68209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli TA007] gi|323977519|gb|EGB72605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli TW10509] gi|324006670|gb|EGB75889.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 57-2] gi|324013180|gb|EGB82399.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 60-1] gi|324020876|gb|EGB90095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 117-3] gi|324112812|gb|EGC06788.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia fergusonii B253] gi|324117842|gb|EGC11741.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli E1167] gi|325496685|gb|EGC94544.1| NADH dehydrogenase subunit J [Escherichia fergusonii ECD227] gi|326339631|gb|EGD63442.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7 str. 1125] gi|326344093|gb|EGD67854.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7 str. 1044] gi|327252550|gb|EGE64209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli STEC_7v] gi|330912105|gb|EGH40615.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli AA86] gi|331039716|gb|EGI11936.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H736] gi|331043659|gb|EGI15797.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli M605] gi|331048571|gb|EGI20647.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli M718] gi|331056608|gb|EGI28617.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA206] gi|331059593|gb|EGI31570.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA143] gi|331064172|gb|EGI36083.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA271] gi|331069058|gb|EGI40450.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA280] gi|331074686|gb|EGI46006.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H591] gi|331078904|gb|EGI50106.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H299] gi|332088410|gb|EGI93528.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella boydii 5216-82] gi|332090625|gb|EGI95721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella dysenteriae 155-74] gi|332093678|gb|EGI98736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella boydii 3594-74] gi|332100926|gb|EGJ04272.1| NADH:ubiquinone oxidoreductase membrane subunit J [Shigella sp. D9] gi|332344061|gb|AEE57395.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Escherichia coli UMNK88] gi|332754928|gb|EGJ85293.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri 4343-70] gi|332755329|gb|EGJ85693.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri K-671] gi|332756223|gb|EGJ86574.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri 2747-71] gi|333001424|gb|EGK20992.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri VA-6] gi|333001957|gb|EGK21523.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri K-218] gi|333002647|gb|EGK22207.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri K-272] gi|333016220|gb|EGK35551.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri K-304] gi|333016531|gb|EGK35861.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri K-227] Length = 184 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 104/186 (55%), Gaps = 21/186 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ +E ++R +L +IG IL+A ++V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G + + +G L+ Y +E++ +LL ++ A + R++ + ++ S Sbjct: 118 GIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169 Query: 183 N-PDNS 187 N D+S Sbjct: 170 NRKDDS 175 >gi|288917192|ref|ZP_06411561.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp. EUN1f] gi|288351383|gb|EFC85591.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp. EUN1f] Length = 317 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 19/185 (10%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F+L + +A+I+ +V +R+ ++S L+ A +LL A F+ + ++VY Sbjct: 19 EAWTFWLLAPVALIAGLGMVLMRSAVHSALLLVVNLFCVAVFYLLQDAPFLGFVQIIVYT 78 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILA---AELIVCASNFMV 114 GA++V FLF++M++ +D + RG LG F G+L I S + Sbjct: 79 GAIMVLFLFVLMLVGVDSSDSLVETLRGQRIAAVILGLGFAGLLVFPIGRAIDGGSAAGL 138 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 +A E NV IGK+L+++Y + E +L+++ IG +V L HR + Sbjct: 139 DAANSE--------GNVTAIGKLLFSEYVFVFEAISALLVVAAIGTMV--LGHREHTGEK 188 Query: 175 DISKQ 179 K+ Sbjct: 189 LTQKE 193 >gi|293395178|ref|ZP_06639464.1| NADH dehydrogenase I subunit J [Serratia odorifera DSM 4582] gi|291422355|gb|EFE95598.1| NADH dehydrogenase I subunit J [Serratia odorifera DSM 4582] Length = 186 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +AI+++ V++ NP++++ LI + + + +F LGA F A + ++VY GA++ Sbjct: 5 FYLAGLIAILATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 V F+F++MML++ V + +++ S +IG Sbjct: 65 VLFVFVVMMLNLGNAVQQ-QEREWLKPSLWIG 95 >gi|291283521|ref|YP_003500339.1| NADH-quinone oxidoreductase subunit J [Escherichia coli O55:H7 str. CB9615] gi|209765154|gb|ACI80889.1| NADH dehydrogenase I chain J [Escherichia coli] gi|290763394|gb|ADD57355.1| NADH-quinone oxidoreductase subunit J [Escherichia coli O55:H7 str. CB9615] gi|320663046|gb|EFX30363.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O55:H7 str. USDA 5905] Length = 184 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88 V F+F++MML++ E+ + R+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86 >gi|300931367|ref|ZP_07146698.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 187-1] gi|300460829|gb|EFK24322.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 187-1] Length = 184 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 104/186 (55%), Gaps = 21/186 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ +E ++R +L +IG IL+A ++V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G + + +G L+ Y +E++ +LL ++ A + R++ + ++ S Sbjct: 118 GIDGTPIIAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169 Query: 183 N-PDNS 187 N D+S Sbjct: 170 NRKDDS 175 >gi|237732311|ref|ZP_04562792.1| NADH:ubiquinone oxidoreductase [Citrobacter sp. 30_2] gi|283832290|ref|ZP_06352031.1| NADH-quinone oxidoreductase, J subunit [Citrobacter youngae ATCC 29220] gi|226907850|gb|EEH93768.1| NADH:ubiquinone oxidoreductase [Citrobacter sp. 30_2] gi|291071935|gb|EFE10044.1| NADH-quinone oxidoreductase, J subunit [Citrobacter youngae ATCC 29220] Length = 184 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 102/185 (55%), Gaps = 20/185 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ +E ++R +L +IG IL+A ++V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G + + +G L+ Y +E++ +LL ++ A + R++ S ++ S Sbjct: 118 GIDGTPISAKAVGISLFGPYVLAVELASMLLLAGLVVAF--------HVGREERSGEVLS 169 Query: 183 NPDNS 187 N + Sbjct: 170 NRTDD 174 >gi|227488699|ref|ZP_03919015.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC 51867] gi|227091360|gb|EEI26672.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC 51867] Length = 282 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 8/174 (4%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + + I + +V + I+S L+ V A + +GA FV ++ +VVY GAV+V Sbjct: 27 WILAAVIIAGAIGMVMCKELIHSALCLLLVMVGVAIEYATMGAPFVFVVQIVVYAGAVMV 86 Query: 69 FFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVC---ASNFMVFSAEGELSRL 124 LFI+MM+ E A+ K G + G+ A L+ A N +A +S Sbjct: 87 MILFIVMMVGARGEAADGEKTATGTSHTVLTGVAAIALLALIGIAVNMSTLTAPRGMSEA 146 Query: 125 -VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQ 174 G NV +G ++ +Y E+ +L+++ +GA++++ R R R +R+ Sbjct: 147 NAEHGGNVAGLGVEIFNKYVVGFEVLSALLIVAAVGAMIMIFRVRAVKRSTQRE 200 >gi|227542302|ref|ZP_03972351.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC 51866] gi|227181902|gb|EEI62874.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC 51866] Length = 283 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 8/174 (4%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + + I + +V + I+S L+ V A + +GA FV ++ +VVY GAV+V Sbjct: 28 WILAAVIIAGAIGMVMCKELIHSALCLLLVMVGVAIEYATMGAPFVFVVQIVVYAGAVMV 87 Query: 69 FFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVC---ASNFMVFSAEGELSRL 124 LFI+MM+ E A+ K G + G+ A L+ A N +A +S Sbjct: 88 MILFIVMMVGARGEAADGEKTATGTSHTVLTGVAAIALLALIGIAVNMSTLTAPRGMSEA 147 Query: 125 -VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQ 174 G NV +G ++ +Y E+ +L+++ +GA++++ R R R +R+ Sbjct: 148 NAEHGGNVAGLGVEIFNKYVVGFEVLSALLIVAAVGAMIMIFRVRAVKRSTQRE 201 >gi|293415573|ref|ZP_06658216.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B185] gi|291433221|gb|EFF06200.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B185] Length = 184 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 104/186 (55%), Gaps = 21/186 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ +E ++R +L +IG IL+A ++V +V++ G ++ Sbjct: 65 VLFVFVVMMLNLG--GSEIEQERQWLKPQVWIGPAILSAIMLVV----IVYAILG-VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G + + +G L+ Y +E++ +LL ++ A + R++ + ++ S Sbjct: 118 GIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREERAGEVLS 169 Query: 183 N-PDNS 187 N D+S Sbjct: 170 NRKDDS 175 >gi|78188618|ref|YP_378956.1| NADH dehydrogenase I subunit 6 [Chlorobium chlorochromatii CaD3] gi|78170817|gb|ABB27913.1| NADH dehydrogenase subunit J [Chlorobium chlorochromatii CaD3] Length = 171 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 48/71 (67%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYLF+ + ++S+ VV RN IYS FSL+F F A L++ L A+F+A+ +VVYVG ++ Sbjct: 11 FYLFAAITVLSAAYVVFTRNVIYSAFSLLFTFFGMAALYVFLSADFIAVTQVVVYVGGIL 70 Query: 68 VFFLFIIMMLD 78 V LF +M + Sbjct: 71 VLLLFGVMFTN 81 >gi|296130542|ref|YP_003637792.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas flavigena DSM 20109] gi|296022357|gb|ADG75593.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas flavigena DSM 20109] Length = 325 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 98/185 (52%), Gaps = 7/185 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F+ + ++++ ++ R +++ ++IF ++ A L++ GAEF+ ++ +VVY Sbjct: 25 EAVLFWTLGPLMVLAALGLLLARKAVHAALAVIFIMISLAFLYVAQGAEFLGVVQVVVYT 84 Query: 64 GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV++ FLF++M++ +D + E + + ++G L L + EG Sbjct: 85 GAVMMLFLFVLMLVGVDRSDSLVETIRGQRWIGLLAGLGLGVVLAGVVGRATYGAPEGLA 144 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISK 178 + + +N E + V++ Q+ +E+ G +L+ + +GA+VL R R R +R+ + Sbjct: 145 T--ANQPSNPEAVAHVIFGQHVLAMEVVGALLVTAALGALVLTHRGRLAPRVTQRERAER 202 Query: 179 QLESN 183 +L Sbjct: 203 RLRDG 207 >gi|320178747|gb|EFW53710.1| NADH-ubiquinone oxidoreductase chain J [Shigella boydii ATCC 9905] Length = 184 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88 V F+F++MML++ E+ + R+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86 >gi|323260324|gb|EGA43943.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 284 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ L+ + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88 V F+F++MML++ E+ + R+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86 >gi|283786348|ref|YP_003366213.1| NADH-quinone oxidoreductase chain J [Citrobacter rodentium ICC168] gi|282949802|emb|CBG89425.1| NADH-quinone oxidoreductase chain J [Citrobacter rodentium ICC168] Length = 184 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88 V F+F++MML++ E+ + R+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86 >gi|157144789|ref|YP_001452108.1| NADH dehydrogenase subunit J [Citrobacter koseri ATCC BAA-895] gi|157081994|gb|ABV11672.1| hypothetical protein CKO_00516 [Citrobacter koseri ATCC BAA-895] Length = 184 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88 V F+F++MML++ E+ + R+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86 >gi|304311503|ref|YP_003811101.1| NADH dehydrogenase, chain J [gamma proteobacterium HdN1] gi|301797236|emb|CBL45456.1| NADH dehydrogenase, chain J [gamma proteobacterium HdN1] Length = 153 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 23/159 (14%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA- 84 RNP++ + +I + + A +F +GA F A + ++VY GA++V F+F++MML++ EV Sbjct: 7 RNPVHGLLYMIVSLLAVAMVFFAVGAPFAAALEMIVYAGAIMVLFVFVVMMLNLGGEVEL 66 Query: 85 ------EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV--ENIGK 136 +PR +L+A ++V +F+ SA G V + +G Sbjct: 67 LERVWLQPRTW------VLPAVLSAVVLVQLVSFLWDSAPS------IAGQEVSPKQVGI 114 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +L+ Y +E++ ILL +++ + L L R D++ D Sbjct: 115 LLFGPYLLAVELASMILLGALV--VALHLGRREDLEEGD 151 >gi|150251537|ref|YP_001312269.1| NADH dehydrogenase subunit 6 [Cycas taitungensis] gi|221272320|sp|A6H5P5|NU6C_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|149941587|dbj|BAF65011.1| NADH dehydrogenase subunit 6 [Cycas taitungensis] Length = 180 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 22/161 (13%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + N IYS SL V + L++LL A+FVA +++YVGAV V +F +M+++ Sbjct: 26 VVLLTNIIYSALSLGPVLVCISLLYILLNADFVAAAQILIYVGAVNVLIVFAVMLMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFSAEGELSRLVFKG------- 128 +K F+ + +G L+VC S F ++ ++ E+S Sbjct: 83 ----NQKYPNFVPLWTVGD-GITLVVCTSLFCSLITIILNTSWSEISMTTKSNQILEQDL 137 Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 NNV+ IG L T + P E+ ILL++++GAI + R Sbjct: 138 TNNVQRIGAHLSTDFFLPFELLSIILLVALVGAITIARREE 178 >gi|226327873|ref|ZP_03803391.1| hypothetical protein PROPEN_01754 [Proteus penneri ATCC 35198] gi|225203577|gb|EEG85931.1| hypothetical protein PROPEN_01754 [Proteus penneri ATCC 35198] Length = 277 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 96/191 (50%), Gaps = 13/191 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ L+ + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAGLIAILATLRVITHTNPVHALLYLVISLIALSVVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EGELSRLV 125 V F+F++MML++ V + +K F+IG L++ S+ GE++ + Sbjct: 65 VLFVFVVMMLNLGKSVVDQERKW-LQPKFWIGPALLSLMLLVVLIYAISSVTHGEITGEI 123 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 + +G L+ Y +E++ +LL +I A + RD D+ +E+ Sbjct: 124 I---GAKEVGISLFGPYILAVELASVLLLSGLIVAYHI----GRDQSHDDL---VENENA 173 Query: 186 NSIVMVKVKSG 196 M+ ++ G Sbjct: 174 GEQKMIPLQHG 184 >gi|156598041|gb|ABU85286.1| NADH-plastoquinone oxidoreductase subunit 6 [Cycas micronesica] Length = 180 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 22/161 (13%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + N IYS SL V + L++LL A+FVA +++YVGAV V +F +M+++ Sbjct: 26 VVLLTNIIYSALSLGPVLVCISLLYILLNADFVAAAQILIYVGAVNVLIVFAVMLMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFSAEGELSRLVFKG------- 128 +K F+ + +G L+VC S F ++ ++ E+S Sbjct: 83 ----NQKYPNFVPLWTVGD-GITLVVCTSLFCSLITIILNTSWSEISMTTKSNQILEQDL 137 Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 NNV+ IG L T + P E+ ILL++++GAI + R Sbjct: 138 TNNVQRIGAHLSTDFFLPFELLSIILLVALVGAITIARREE 178 >gi|218439483|ref|YP_002377812.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 7424] gi|218172211|gb|ACK70944.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 7424] Length = 204 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 95/179 (53%), Gaps = 16/179 (8%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI--DIEVA 84 N +YS F L F++ AG+++LL A+FVA +++YVGAV V LF IM+++ D +V Sbjct: 31 NIVYSAFLLGGVFLSIAGIYILLNADFVAAAQILIYVGAVNVLILFAIMLVNKQEDFKVL 90 Query: 85 EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--GELSRLVFKGNNVENIGKVLYTQY 142 PR+ ++ G++ L ++ + S V + VE IGK ++ + Sbjct: 91 -PRR---WIRKIATGVVCFGLFALLGTMILITPWSLNSTSPAVVENTLVE-IGKHFFSDF 145 Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRRD----IKRQDISKQLESNPDNSIVMVKVKSGK 197 P E++ +LL++M+GAI++ RRD ++ + + + P+ ++ ++SG Sbjct: 146 LLPFELASVLLLMAMVGAIII---ARRDFIPEMQPSEPTATALTLPERPRELISLESGT 201 >gi|320354154|ref|YP_004195493.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] gi|320122656|gb|ADW18202.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] Length = 158 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 89/163 (54%), Gaps = 10/163 (6%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A++ + +V R+P+ S + ++ AGL+ LL A+ + + L+VY GA++ +FI Sbjct: 2 LAVLGAAGLVLFRHPMNGAMSFVVTLISLAGLYALLSAKLIFALQLIVYAGAIMSLIVFI 61 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-ELSRLVFKGNN-- 130 IM L+I + P+++ L + IG + +++ F+V + +S GN+ Sbjct: 62 IMFLNIQPD-DLPKEETKLL--YIIG--GSIIVLPVGLFLVKIVKSIPMSSAALIGNDFG 116 Query: 131 -VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 V+ +G +L+ + P EI +LL+S+IGA+VL R IK Sbjct: 117 GVKQVGLLLFKDWLVPFEIVSILLLVSLIGAVVLA-GKRGSIK 158 >gi|292385437|gb|ADE22001.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFWGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|87043016|ref|YP_492630.1| NADH dehydrogenase subunit 6 [Dictyostelium citrinum] gi|122000117|sp|Q2LCR2|NU6M_DICCI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|84682116|gb|ABC60381.1| NADH dehydrogenase subunit 6 [Dictyostelium citrinum] Length = 226 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 42/200 (21%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 +F+++ NPIYS+ +LI + A + L + EF+A I ++V VGA+ V FLFI+MM+ Sbjct: 17 CTFVILRSVNPIYSILNLIVIYGCYASILLTVEMEFLACIYILVNVGAIAVLFLFIVMMI 76 Query: 78 DIDI-EVAEPRKKR------GFLGSFFIGILA-----------AELIVCASNFMVFSAEG 119 +I+I E+ E KK GF+G IGI+ E+I ++F +F Sbjct: 77 NINIVEIQETMKKYNIYMFVGFIG--LIGIMGILITNYQIRIKEEVI---ADFSMFLLNT 131 Query: 120 ELS------------RLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVL--- 163 E++ L + ++ +G V+Y + ++ ILL+ M+G I + Sbjct: 132 EITTLQATPSYLDFYELFVETTDLRAMGSNVIYGSQSIWFIMACIILLIGMVGVIYITED 191 Query: 164 MLRHRRDI---KRQDISKQL 180 ++ +R + +RQDI+ Q+ Sbjct: 192 LIIEKRKLNARRRQDINSQV 211 >gi|292385429|gb|ADE21995.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] gi|292385433|gb|ADE21998.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFWGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|283778525|ref|YP_003369280.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula staleyi DSM 6068] gi|283436978|gb|ADB15420.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula staleyi DSM 6068] Length = 328 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 45/69 (65%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + +AI S+ + ++P+YS + + AGLF GAEF+ + T+VVY GA++ Sbjct: 78 FWVLALIAIGSAVGTIGSQSPVYSAIWFAMSLLGTAGLFFYQGAEFLGVATIVVYAGAIV 137 Query: 68 VFFLFIIMM 76 V FLF+IM+ Sbjct: 138 VTFLFVIML 146 >gi|58045488|gb|AAW65071.1| NADH dehydrogenase subunit 6 [Lessonia corrugata] gi|292385505|gb|ADE22052.1| NADH dehydrogenase subunit 6 [Lessonia corrugata] gi|292385509|gb|ADE22055.1| NADH dehydrogenase subunit 6 [Lessonia corrugata] Length = 311 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLIFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|255691143|ref|ZP_05414818.1| NADH dehydrogenase I, subunit 6 [Bacteroides finegoldii DSM 17565] gi|260623236|gb|EEX46107.1| NADH dehydrogenase I, subunit 6 [Bacteroides finegoldii DSM 17565] Length = 170 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 15/175 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI---GILAAELIVCASNFMVFSAE 118 Y G ++V ++F I++ + + AE K+ FL F G+ I NFM Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAERLKRSRFLAGLFTMIAGLAIILFITLKHNFM----- 118 Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRR 169 + + L + N+ IG L + +Y Y P E +LL +IG I M+ +R Sbjct: 119 -QTANLAPQEINIHTIGHALLSSDKYGYVLPFEAVSILLLACIIGGI--MIARKR 170 >gi|238927263|ref|ZP_04659023.1| NADH dehydrogenase (ubiquinone) subunit J [Selenomonas flueggei ATCC 43531] gi|304437253|ref|ZP_07397213.1| NADH-quinone oxidoreductase subunit J [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|238884850|gb|EEQ48488.1| NADH dehydrogenase (ubiquinone) subunit J [Selenomonas flueggei ATCC 43531] gi|304369745|gb|EFM23410.1| NADH-quinone oxidoreductase subunit J [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 164 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 9/162 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S FY + + II + VV N ++S L+ +F+ A ++ +GAEF+ + L+VY G Sbjct: 2 SFIFYFLAAVTIIGALGVVLSPNVVHSALFLVLSFIGVAAIYFYIGAEFLGAVQLMVYSG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE---LIVCASNFMVFSAEGEL 121 AV V + IM+ D +A+ + G+LA LI C A GE Sbjct: 62 AVAVLIVMAIMLTRRD-SMAQSNPSQKLFRRVVTGLLAGSIFFLIGCGIVLAPLPA-GEF 119 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + + I +++ Y P E++ +LL +M+GA++L Sbjct: 120 A----ASTGADEIAQLMLGTYLVPFEVTAVLLLAAMVGALLL 157 >gi|292385445|gb|ADE22007.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] gi|292385449|gb|ADE22010.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ F F++GIL Sbjct: 81 IERPWSVKKKRF---FYLGIL 98 >gi|164422132|ref|YP_001648746.1| NADH dehydrogenase subunit 6 [Mycosphaerella graminicola] gi|155964395|gb|ABU40262.1| NADH dehydrogenase subunit 6 [Mycosphaerella graminicola] Length = 225 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 48/71 (67%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 +F +II LV+ +NP+ SV LI F+N AG ++LG F+ + L+VYVGAV + FL Sbjct: 24 TFASIICGILVIISKNPVVSVLFLIGLFLNIAGYLMMLGINFIGLSYLLVYVGAVSILFL 83 Query: 72 FIIMMLDIDIE 82 FI+M++++ I Sbjct: 84 FILMLINVRIS 94 >gi|3413802|emb|CAA73989.1| NADH dehydrogenase subunit 6 [Chlorogonium elongatum] Length = 165 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 17/161 (10%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 SFL+ N S+ + FVNA + L LG EF+A++ ++VYVGA+ V FLF+IM+L+ Sbjct: 13 SFLISWTGNVFMSLMYAVMLFVNATLVLLSLGFEFLALVNMLVYVGALAVLFLFVIMLLE 72 Query: 79 IDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVF----SAEGELSRLVFKGN---- 129 I AE R RG+ F G+ ++V F V S + + ++ N Sbjct: 73 IP--SAELRAYYRGYSVLTFFGL----IVVLIKQFGVALPFGSPNSQGAPYIYSFNCTSE 126 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 ++ NIG Y +YA L ++ +L +++ GA+V L H R Sbjct: 127 SISNIGVAFYIRYADVLILNSLVLTIALFGALV--LAHSRS 165 >gi|57234301|ref|YP_181654.1| proton-translocating NADH-quinone oxidoreductase, J subunit [Dehalococcoides ethenogenes 195] gi|57224749|gb|AAW39806.1| proton-translocating NADH-quinone oxidoreductase, J subunit [Dehalococcoides ethenogenes 195] Length = 160 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 20/169 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + I S+ LVV V+N +S LI F++ AG+FLLL A+F+A + +++Y+GA+ Sbjct: 5 FWIIAITCIASALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIGAIS 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA----SNFMVFSAEGELSR 123 V + IM+ +RG L + + A +V A +M+ S+ S Sbjct: 65 VLIILAIML--------TREVQRGNLTNKL--KIPALAVVTALGGIMTYMLISSNWTSSD 114 Query: 124 LVFKGNNVENIGKVLYTQYAYPLE--ISGFILLLSMIGAIVLMLRHRRD 170 + ++L+ + L I+G ILL+++IGAIVL+ RD Sbjct: 115 APAPSTTTAGLAEMLFGSDGFGLGVLITGVILLVAIIGAIVLV----RD 159 >gi|16761245|ref|NP_456862.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765647|ref|NP_461262.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141059|ref|NP_804401.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412783|ref|YP_149858.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180890|ref|YP_217307.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161502535|ref|YP_001569647.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161612952|ref|YP_001586917.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994668|ref|ZP_02575759.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229689|ref|ZP_02654747.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237337|ref|ZP_02662395.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242438|ref|ZP_02667370.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261664|ref|ZP_02683637.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465977|ref|ZP_02699847.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817950|ref|ZP_02829950.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445907|ref|YP_002041580.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451507|ref|YP_002046373.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470957|ref|ZP_03076941.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738076|ref|YP_002115389.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248229|ref|YP_002147278.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262113|ref|ZP_03162187.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361717|ref|YP_002141353.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200387795|ref|ZP_03214407.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929159|ref|ZP_03220302.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353435|ref|YP_002227236.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857738|ref|YP_002244389.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052936|ref|ZP_03345814.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419032|ref|ZP_03352098.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427018|ref|ZP_03359768.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580775|ref|ZP_03362601.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612296|ref|ZP_03370122.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213645877|ref|ZP_03375930.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865414|ref|ZP_03387533.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583194|ref|YP_002636992.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289829691|ref|ZP_06547232.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25285204|pir||AF0796 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420861|gb|AAL21221.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503544|emb|CAD07552.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Typhi] gi|29136685|gb|AAO68250.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127040|gb|AAV76546.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128523|gb|AAX66226.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160863882|gb|ABX20505.1| hypothetical protein SARI_00579 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161362316|gb|ABX66084.1| hypothetical protein SPAB_00658 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404570|gb|ACF64792.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409811|gb|ACF70030.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457321|gb|EDX46160.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713578|gb|ACF92799.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631291|gb|EDX49851.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093193|emb|CAR58637.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211932|gb|ACH49329.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240368|gb|EDY22988.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289699|gb|EDY29062.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604893|gb|EDZ03438.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321703|gb|EDZ06902.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273216|emb|CAR38179.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205327485|gb|EDZ14249.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335895|gb|EDZ22659.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338451|gb|EDZ25215.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205345142|gb|EDZ31906.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349398|gb|EDZ36029.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709541|emb|CAR33886.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467721|gb|ACN45551.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247526|emb|CBG25353.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994415|gb|ACY89300.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158878|emb|CBW18391.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913311|dbj|BAJ37285.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086754|emb|CBY96526.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222978|gb|EFX48049.1| NADH-ubiquinone oxidoreductase chain J [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617066|gb|EFY13972.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617628|gb|EFY14527.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624742|gb|EFY21571.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630291|gb|EFY27061.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634472|gb|EFY31205.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639182|gb|EFY35874.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640045|gb|EFY36712.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645734|gb|EFY42258.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651509|gb|EFY47884.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656069|gb|EFY52368.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659422|gb|EFY55669.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665882|gb|EFY62065.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669878|gb|EFY66019.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673864|gb|EFY69961.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678622|gb|EFY74678.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683582|gb|EFY79596.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687658|gb|EFY83628.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715369|gb|EFZ06940.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130651|gb|ADX18081.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193508|gb|EFZ78713.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198413|gb|EFZ83515.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201927|gb|EFZ86989.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208535|gb|EFZ93474.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209756|gb|EFZ94680.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218292|gb|EGA03002.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222950|gb|EGA07299.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227386|gb|EGA11551.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232287|gb|EGA16390.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235679|gb|EGA19763.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241160|gb|EGA25196.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244902|gb|EGA28904.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250021|gb|EGA33915.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251633|gb|EGA35501.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254944|gb|EGA38735.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323268100|gb|EGA51577.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270807|gb|EGA54245.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326628527|gb|EGE34870.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989253|gb|AEF08236.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 184 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ L+ + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88 V F+F++MML++ E+ + R+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86 >gi|331699303|ref|YP_004335542.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudonocardia dioxanivorans CB1190] gi|326953992|gb|AEA27689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudonocardia dioxanivorans CB1190] Length = 274 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 92/176 (52%), Gaps = 7/176 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S+ F++ +A+ + +V RN ++S L+ ++ L+++ A F+ + ++VY Sbjct: 20 ESIAFWILGIVALGGALGMVFARNAVHSALFLVMTMLSLGILYIVQQAPFLGFVQIIVYT 79 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GAV++ FLF++M++ D +EV R +R +G+ + A + + Sbjct: 80 GAVMMLFLFVLMLVGRDSSDSVVEVL--RGQRIAGLLLGLGLALLLVAAVARSLTSVTPA 137 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G + L NN+ +G++++T Y P E++ +L+ + +GA+VL + +++ Sbjct: 138 GLGANLQGSNNNLPGLGRLIFTDYLLPFELTSALLITAALGAMVLAHAQTKSHEKR 193 >gi|167549681|ref|ZP_02343440.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|198244071|ref|YP_002216390.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|238912401|ref|ZP_04656238.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197938587|gb|ACH75920.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205325286|gb|EDZ13125.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|326624141|gb|EGE30486.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 184 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ L+ + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88 V F+F++MML++ E+ + R+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86 >gi|397907|emb|CAA48369.1| NADH dehydrogenase I, subunit nuoJ [Escherichia coli] Length = 184 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 50/72 (69%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI 79 V F+F++MML++ Sbjct: 65 VLFVFVVMMLNL 76 >gi|320107668|ref|YP_004183258.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Terriglobus saanensis SP1PR4] gi|319926189|gb|ADV83264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Terriglobus saanensis SP1PR4] Length = 168 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F +F+ + + + ++ R+PI S SL+ ++ A ++ LGAEF+A ++VY Sbjct: 1 MQLVLFLIFAVLCVAGALNLLFQRHPINSALSLVVVMMSLAVIYWTLGAEFLAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+V F+F++M+L+ E + G ++ GI I+ ++ L Sbjct: 61 AGAVMVLFVFVVMLLN----AGEEERTTGSRAAYIAGIPGVAAILALLTYIFMHERAALG 116 Query: 123 RLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G +N+ I +VL+T+ P E++ ++L++++GA+VL + + Sbjct: 117 YATLGGSLNHTTSNITEISRVLFTELLLPFEVTSILILVAILGAVVLARKEQ 168 >gi|325003715|ref|ZP_08124827.1| NADH:ubiquinone oxidoreductase subunit J [Pseudonocardia sp. P1] Length = 284 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 99/190 (52%), Gaps = 13/190 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+ + +V R+ +++ L+ + A L+++ A F+ + ++VY Sbjct: 19 EAITFWILGPVALAGALGLVFARHAVHAALLLVLTMFSIAVLYIVQSAPFLGFVQIIVYT 78 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GAV++ FLF++M++ D IEV R +R F +G LAA L+ S + Sbjct: 79 GAVMMLFLFVLMLVGKDSKDSVIEVL--RGQRAAALVFGVG-LAALLVAGISRGLTEVTP 135 Query: 119 GELSRLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM----LRHRRDIKR 173 L G+ NV +G++++T Y E+S +L+++ +G +VL +H + +R Sbjct: 136 AGLQAGGMGGSANVAGLGRLIFTDYLLAFELSAALLMVAALGGMVLTGSQSSQHAKLSQR 195 Query: 174 QDISKQLESN 183 + + ++L Sbjct: 196 ETVLRRLRGQ 205 >gi|290790821|gb|ADD63078.1| NADH-plastoquinone oxidoreductase subunit 6 [Potamophila parviflora] Length = 176 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 20/151 (13%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-----------RLVFKG--NNVE 132 K + F + IG L+ F + + + S ++V +G NNV+ Sbjct: 86 WSKDKNF---WTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 IG L T + P E+ ILL+S+IGAI + Sbjct: 143 QIGIHLATDFYLPFELISIILLVSLIGAITM 173 >gi|92115239|ref|YP_575167.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043] gi|91798329|gb|ABE60468.1| NADH dehydrogenase subunit J [Chromohalobacter salexigens DSM 3043] Length = 203 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +A++++ V+T +P++++ LI + + A +F LGA F + ++VY GA++ Sbjct: 5 FYLSAVVAVLATLGVITGTHPVHALLYLIVSLIAVALVFFALGAPFAGALEVIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A+ ++R +L Sbjct: 65 VLFVFVVMMLNLGESTAQ--QERAWL 88 >gi|159106917|ref|YP_001531335.1| NADH-plastoquinone oxidoreductase subunit 6 [Lolium perenne] gi|221272331|sp|A8Y9E0|NU6C_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|158934451|emb|CAO86029.1| NADH-plastoquinone oxidoreductase subunit 6 [Lolium perenne] Length = 176 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 14/148 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85 Query: 86 PRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNVENIG 135 K + + +G F I+ ++ + +++ +++V +G NNV+ IG Sbjct: 86 WSKDKNYWTIGDGFTSIVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163 L T + P E+ ILL+S+IGAI + Sbjct: 146 IHLATDFYLPFELISIILLVSLIGAITM 173 >gi|330339456|ref|YP_004376365.1| NADH dehydrogenase subunit 6 [Moniliophthora roreri] gi|308912823|gb|ADO51570.1| NADH dehydrogenase subunit 6 [Moniliophthora roreri] Length = 207 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 51/80 (63%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L + +F ++S +T +NP+ SV LI FV +AG +L+G F+ + ++VY Sbjct: 1 MTTLLINILAFATLLSGIFSITSKNPVISVLFLIGTFVLSAGYLILIGINFIGISYIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIE 82 VGA+ V FLF+IMM++I + Sbjct: 61 VGAIAVLFLFVIMMINIKLT 80 >gi|194333681|ref|YP_002015541.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prosthecochloris aestuarii DSM 271] gi|194311499|gb|ACF45894.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prosthecochloris aestuarii DSM 271] Length = 173 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V ++ FYLF+ + + S+ VV +N IYS FSL+F F A L++ L A+F+A+ +VV Sbjct: 4 VTYTIIFYLFAAITVFSAAFVVFSKNVIYSAFSLLFTFFGVAALYVYLSADFIAVTQIVV 63 Query: 62 YVGAVIVFFLFIIMMLD 78 YVG ++V LF +M + Sbjct: 64 YVGGILVLLLFGVMFTN 80 >gi|220907087|ref|YP_002482398.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 7425] gi|219863698|gb|ACL44037.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 7425] Length = 207 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 12/170 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++ L M I S+ VV + N +YS F L F++ AG +LLL A+FV+ +++Y Sbjct: 7 VQTVSVVLLGLMMIGSALGVVLLNNIVYSAFLLGGVFISMAGFYLLLNADFVSAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 VGAV V LF IM+++ + VA ++G +G+ A ++V + A Sbjct: 67 VGAVNVLILFAIMLVNKREDFAPVAGRWIRQGAAALVSLGLFALLGTMVVQTPWPIPSVA 126 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 S LV IG+ ++ + P E++ +LL++++GA+VL R Sbjct: 127 STVTSTLVV-------IGEHFFSDFLLPFELASVLLLMALVGAVVLARRE 169 >gi|254033624|ref|YP_003029829.1| NADH dehydrogenase subunit 6 [Dunaliella salina] gi|246880710|gb|ACS95023.1| NADH dehydrogenase subunit 6 [Dunaliella salina] Length = 157 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 14/163 (8%) Query: 11 FSFMAIIS--SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +SF+A+++ S LV +N S+ I ++N+ + L LG EF+A+I ++VYVGA+ V Sbjct: 5 YSFIALLAFLSILVSQTKNVFMSLMYSILLYINSFVVLLSLGFEFLAIINVLVYVGALAV 64 Query: 69 FFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 FLF+IM+L+I E R RG+ +G L+ L ++ +F+ L Sbjct: 65 LFLFVIMLLEIP--STELRAYYRGYSVLAMLGFLSVRLFSVNNSHTIFTFIPTL------ 116 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 ++ N+G Y YA L ++ IL +++ GA+V L H + Sbjct: 117 -ESISNVGYAFYIVYADVLVLNSLILTIALFGALV--LAHNQS 156 >gi|58578583|ref|YP_203329.1| NADH dehydrogenase subunit 6 [Smittium culisetae] gi|57339027|gb|AAW49496.1| NADH dehydrogenase subunit 6 [Smittium culisetae] Length = 170 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 17/154 (11%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID----IE 82 NPIYSV SLI F+ LF+ G F+ + ++YVGA+ + F+F IMML+ D I+ Sbjct: 23 NPIYSVLSLISVFILTGILFIFYGLTFIGLSYFIIYVGAISILFIFAIMMLETDFPSTIK 82 Query: 83 VAEPRKKRGFLGSFFIGILAA------ELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 + +K + GIL +L +N + S ++ + F +N++ IG Sbjct: 83 YLDLKKDIPLIT----GILCILIYYYLDLSYINNNKNIISG---INNIYFYSSNIKLIGY 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 LYT + L + FILLL+MIG I+L L+ ++ Sbjct: 136 CLYTTHCLWLILISFILLLAMIGPIILCLKMNKN 169 >gi|77459833|ref|YP_349340.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf0-1] gi|77383836|gb|ABA75349.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf0-1] Length = 166 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 5/99 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ VVT NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFALGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 V F+F++MML++ A +++R +L GI A +I Sbjct: 65 VLFVFVVMMLNLG--PASVQQERTWLKP---GIWAGPVI 98 >gi|292385607|gb|ADE22128.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|27464553|gb|AAO16128.1| NADH dehydrogenase subunit 6 [Alcyonium coralloides] gi|27464556|gb|AAO16130.1| NADH dehydrogenase subunit 6 [Alcyonium glomeratum] gi|27464559|gb|AAO16132.1| NADH dehydrogenase subunit 6 [Alcyonium glomeratum] Length = 147 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 7/144 (4%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+E IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185 +L + S+ L S D Sbjct: 114 LLAKQPNSPFLYNSHSESLRSRQD 137 >gi|222824429|ref|YP_002576003.1| NADH-quinone oxidoreductase, J subunit [Campylobacter lari RM2100] gi|222539650|gb|ACM64751.1| NADH-quinone oxidoreductase, J subunit [Campylobacter lari RM2100] Length = 168 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 + +Y++ SL A V +G + LL AEF+ I ++VY GA++ + F +M D I+V E Sbjct: 25 TSVLYAISSLAAAMVFLSGFYFLLNAEFIGAIQIIVYSGAILGLYSFAMMFFDASIKVKE 84 Query: 86 PRK-KRGFLGSFFIGILAAEL---IVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141 K KR F+ F I +A L I+ NF + + GE V+ ++ + IG L+T+ Sbjct: 85 NLKGKRVFI---FAVIFSAILLISIIMGYNFGL-NETGE----VYGLDSTQQIGFTLFTK 136 Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 Y E +LL+++I AI L +++IK+ + Sbjct: 137 YMLAFEFMAILLLIALICAIAL---TQKNIKKDE 167 >gi|85059571|ref|YP_455273.1| NADH dehydrogenase subunit J [Sodalis glossinidius str. 'morsitans'] gi|84780091|dbj|BAE74868.1| NADH dehydrogenase I subunit J [Sodalis glossinidius str. 'morsitans'] Length = 187 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 27/178 (15%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FYL +A++++ V+T P++++ LI + + A +F LGA F + ++VY G Sbjct: 2 ELAFYLSGLVAVLATLRVITHTQPVHALLYLIISLLAIACVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDI----DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 A++V F+F++MML++ D + + R ++G + ++ ++V A Sbjct: 62 AIMVLFVFVVMMLNMSVGRDKQECAWLRPRAWIGPALMSLVLLAILVRA----------- 110 Query: 121 LSRLVFKGNN--------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 LV G++ + +G L+ Y +E++ +LL ++ A L R RD Sbjct: 111 ---LVGAGDHGIAGDLIAAKTVGIALFGPYVLAVELASMLLLAGLVVAFHLG-RDERD 164 >gi|254032055|ref|YP_001023823.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ2423] Length = 277 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 6/70 (8%) Query: 27 NPIYS------VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 PIYS VF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ Sbjct: 16 TPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGG 75 Query: 81 IEVAEPRKKR 90 + P +R Sbjct: 76 SFLGAPTLER 85 Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 12/66 (18%) Query: 105 LIVCASN----FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 L+ C N F SA G +N+E IG VLY Y Y + FILL++MIGA Sbjct: 215 LVDCGPNYNDSFFAPSAPG--------CSNLEAIGAVLYINYYYAFILVSFILLVAMIGA 266 Query: 161 IVLMLR 166 IVL L+ Sbjct: 267 IVLGLQ 272 >gi|325104668|ref|YP_004274322.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter saltans DSM 12145] gi|324973516|gb|ADY52500.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter saltans DSM 12145] Length = 180 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 12/170 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FYL + +AI+S+ VVT +N + SVF +AGL++ A+FVA+ +V+Y Sbjct: 1 MEQILFYLLAGIAILSACYVVTSQNLVRSVFMFFVTLFASAGLYIFALADFVALTQIVIY 60 Query: 63 VGAVIVFFLFIIMM--------LD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 VG V+V LF+ M+ LD +++E R L IL + N Sbjct: 61 VGGVLVMLLFVFMLSSKKSLQGLDGLTKQKLSENRLPGAILSLSVFAILIYTIFQIDFNS 120 Query: 113 MVF--SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 + + SA + + N+ NIG L T + P E+ +L++ +IGA Sbjct: 121 LSWIQSAIATDNVKLPSDENISNIGINLMTGFLLPFELICVLLMMVLIGA 170 >gi|304413379|ref|ZP_07394852.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Candidatus Regiella insecticola LSR1] gi|304284222|gb|EFL92615.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Candidatus Regiella insecticola LSR1] Length = 191 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 59/97 (60%), Gaps = 1/97 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY + +A++++ V++ NPI+++ L+ + + A +F LGA F + ++VY Sbjct: 1 MMEFVFYTAAVIAVLATLRVISHHNPIHALLYLVVSLLAIAAVFFSLGAYFAGALEIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 GA++V F+F++MML++ + + ++K S +IG Sbjct: 61 AGAIMVLFVFVVMMLNLGDSIQQ-QEKAWLKPSVWIG 96 >gi|292385564|gb|ADE22096.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|292385524|gb|ADE22066.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae] gi|292385528|gb|ADE22069.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae] gi|292385532|gb|ADE22072.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae] gi|292385536|gb|ADE22075.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|157736567|ref|YP_001489250.1| NADH-quinone oxidoreductase, J subunit [Arcobacter butzleri RM4018] gi|315635730|ref|ZP_07890993.1| NADH-quinone oxidoreductase subunit J [Arcobacter butzleri JV22] gi|157698421|gb|ABV66581.1| NADH-quinone oxidoreductase, J subunit [Arcobacter butzleri RM4018] gi|315480027|gb|EFU70697.1| NADH-quinone oxidoreductase subunit J [Arcobacter butzleri JV22] Length = 173 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 15/168 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F +F AI + ++ +NP++S ++ ++ AG+F LL A F+ ++ ++VY Sbjct: 1 MVDLIFIALAFFAITGAIAMIVYKNPMFSALGVLITMLSVAGMFALLNATFLFLVQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA++ LFI+M L+I E EP K + I +I+ N +V A Sbjct: 61 AGAIMTLILFILMFLNIKEEDLPHEPNKYK--------LIALGAVIMIPLNVLVLKAVSN 112 Query: 121 LSRLVF---KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 L + F +G+ +++ +G LY + E+ +LL++++G++VL Sbjct: 113 LPQKDFNIVQGDFGDIKPVGIELYNHWIVAFELISILLLIALVGSVVL 160 >gi|153807447|ref|ZP_01960115.1| hypothetical protein BACCAC_01727 [Bacteroides caccae ATCC 43185] gi|149129809|gb|EDM21021.1| hypothetical protein BACCAC_01727 [Bacteroides caccae ATCC 43185] Length = 170 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 15/175 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV---CASNFMVFSAE 118 Y G ++V ++F I++ + + AE K+ F F + A +I+ NF+ Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFFAGLFTMVAGAAIILFITLKHNFL----- 118 Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRR 169 + + L + N+ +IG L + +Y Y P E +LL +IG I M+ +R Sbjct: 119 -QTNNLAPQEINIHSIGHALLSSDKYGYILPFEAVSILLLACIIGGI--MIARKR 170 >gi|292385556|gb|ADE22090.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|292385552|gb|ADE22087.1| NADH dehydrogenase subunit 6 [Lessonia variegata] gi|292385560|gb|ADE22093.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|292385461|gb|ADE22019.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata] gi|292385465|gb|ADE22022.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|292385441|gb|ADE22004.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|330810471|ref|YP_004354933.1| NADH-quinone oxidoreductase subunit J [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|19483811|gb|AAL89572.1| NADH dehydrogenase I subunit J [Pseudomonas fluorescens] gi|327378579|gb|AEA69929.1| NADH-quinone oxidoreductase subunit J [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 166 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 5/99 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ VVT NP++++ LI + + A F LGA F + ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFALGAPFAGALEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 V F+F++MML++ A +++R +L GI A +I Sbjct: 65 VLFVFVVMMLNLG--PAAVQQERSWLKP---GIWAGPVI 98 >gi|292385516|gb|ADE22060.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis] gi|292385520|gb|ADE22063.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|58045486|gb|AAW65070.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|17227721|ref|NP_484269.1| NADH dehydrogenase subunit J [Nostoc sp. PCC 7120] gi|28201839|sp|Q8Z075|NU6C_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName: Full=NAD(P)H dehydrogenase I, chain 6; AltName: Full=NDH-1, chain 6; AltName: Full=NDH-G gi|17135203|dbj|BAB77749.1| NADH dehydrogenase subunit 6 [Nostoc sp. PCC 7120] Length = 202 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 5/195 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M I ++ VV + +YS F L F++ AG++LLL +FVA ++VY Sbjct: 7 VQVVSFGILATMLIGTALGVVLATSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + P G + I++ L S MV + S Sbjct: 67 VGAVNVLILFAIMLVNKRQDFT-PYPSAG-IRKVLTAIVSVGLFALLST-MVLATPWAYS 123 Query: 123 RLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQL 180 G+ ++ IG+ ++ + P E++ +LL++M+GAI+L R + ++ + + + Sbjct: 124 TTPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARREYLPEVTPSGLPQTV 183 Query: 181 ESNPDNSIVMVKVKS 195 + P+ +V S Sbjct: 184 LTLPERPRELVGAGS 198 >gi|319789716|ref|YP_004151349.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio ammonificans HB-1] gi|317114218|gb|ADU96708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio ammonificans HB-1] Length = 159 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 7/159 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F+YLF +A++ + + VT +N I +L+ FV GL+ +GAEF+ ++ ++VY Sbjct: 1 MAEFFYYLFGVIAVVFAAVAVTAKNVIRGGVALLGTFVALGGLYFSVGAEFIGIVQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+IV +LF +M LD+ EP + F+ + +IV FS G + Sbjct: 61 GGAIIVLYLFALMTLDLKRMEGEPVRLFSVAAGGFLSLALVAIIVYGG----FSFFGSVH 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 V + + + L+ ++ P E+ +LL++ IGA+ Sbjct: 117 PAV---STAKGLAGPLFYRFLLPFEVVSVLLLVATIGAV 152 >gi|323952073|gb|EGB47947.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli H252] Length = 184 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + +G F LGA F + ++VY GA++ Sbjct: 5 FYICGLIAILATLRVITHTNPVHALLYLIISLLAISGGFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRK 88 V F+F++MML++ E+ + R+ Sbjct: 65 VLFVFVVMMLNLGGSEIEQERQ 86 >gi|292385548|gb|ADE22084.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|292385540|gb|ADE22078.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|292385469|gb|ADE22025.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|292385568|gb|ADE22099.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|292385513|gb|ADE22058.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis] Length = 286 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|116749372|ref|YP_846059.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Syntrophobacter fumaroxidans MPOB] gi|116698436|gb|ABK17624.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Syntrophobacter fumaroxidans MPOB] Length = 172 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 52/80 (65%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+ + + + S+ + +T RN +++V LIF++ A LF L GA +A ++ Sbjct: 1 MTLYAFLFYIVAGITVASTAMAITRRNLVHAVIYLIFSYFGTAVLFYLFGAPLLAAFEVI 60 Query: 61 VYVGAVIVFFLFIIMMLDID 80 +Y GA++V FLFI+MM+ I+ Sbjct: 61 IYAGAIMVLFLFIVMMIRIE 80 >gi|114177239|gb|ABI53790.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ2423] Length = 301 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 6/70 (8%) Query: 27 NPIYS------VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 PIYS VF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ Sbjct: 40 TPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGG 99 Query: 81 IEVAEPRKKR 90 + P +R Sbjct: 100 SFLGAPTLER 109 Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 12/66 (18%) Query: 105 LIVCASN----FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 L+ C N F SA G +N+E IG VLY Y Y + FILL++MIGA Sbjct: 239 LVDCGPNYNDSFFAPSAPG--------CSNLEAIGAVLYINYYYAFILVSFILLVAMIGA 290 Query: 161 IVLMLR 166 IVL L+ Sbjct: 291 IVLGLQ 296 >gi|239907424|ref|YP_002954165.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio magneticus RS-1] gi|239797290|dbj|BAH76279.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio magneticus RS-1] Length = 172 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 7/174 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F +S +A+ L V+ + + ++ L+ + AGL+LLL A+FVA++ ++ Sbjct: 4 MYLGQTAFAFYSLIALAGGVLAVSAASLVRAMLGLVVSLFGVAGLYLLLLADFVALMQIL 63 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFMVFSAE 118 +YVGAV V F IM+ + E + RG L F +L A ++V V+ Sbjct: 64 IYVGAVTVLIFFAIMLTRASADGGEGQGPGLRGSLRGVFGALLPAGILV--PCLAVYGVA 121 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 G + K + +G L Y E+ +LL +M GA++L R K Sbjct: 122 GFPTP---KNVSPAELGAGLLGPYTMAFELISVVLLAAMAGAVLLAFEKRGAAK 172 >gi|333025110|ref|ZP_08453174.1| putative NADH dehydrogenase subunit J [Streptomyces sp. Tu6071] gi|332744962|gb|EGJ75403.1| putative NADH dehydrogenase subunit J [Streptomyces sp. Tu6071] Length = 261 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 83/158 (52%), Gaps = 12/158 (7%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 ++S L + A +L GA F+ ++ +VVY GAV++ FLF++M++ + A Sbjct: 7 VHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYTGAVMMLFLFVVMLVGV---TAADSL 63 Query: 89 KRGFLGSFFIGIL-----AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143 K G ++ +L A L+ N V +G + G NV+ + + ++T Y Sbjct: 64 KETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQG--TGRANAGGNVQGLAREIFTTYV 121 Query: 144 YPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDISKQ 179 + EI+G +L+ + +GA+VL R R R + +++++++ Sbjct: 122 FAFEITGALLITATVGAMVLTHRERTERALNQREMAEK 159 >gi|320105158|ref|YP_004180749.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Isosphaera pallida ATCC 43644] gi|319752440|gb|ADV64200.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Isosphaera pallida ATCC 43644] Length = 325 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 50/74 (67%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + ++F +FS A+ ++ ++ R+P++S ++ AGLFLL GA+F+A T++VY Sbjct: 66 ISAVFHTVFSLSAVAAAAAMIASRDPVHSALWFAVTVLSTAGLFLLAGAQFLAAGTVIVY 125 Query: 63 VGAVIVFFLFIIMM 76 GA+IV FLF+IM+ Sbjct: 126 AGAIIVMFLFVIML 139 >gi|238763934|ref|ZP_04624891.1| NADH-quinone oxidoreductase subunit J [Yersinia kristensenii ATCC 33638] gi|238697902|gb|EEP90662.1| NADH-quinone oxidoreductase subunit J [Yersinia kristensenii ATCC 33638] Length = 183 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99 V F+F++MML++ ++E +++R +L S +IG Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIG 94 >gi|22125533|ref|NP_668956.1| NADH dehydrogenase subunit J [Yersinia pestis KIM 10] gi|45442147|ref|NP_993686.1| NADH dehydrogenase subunit J [Yersinia pestis biovar Microtus str. 91001] gi|51596898|ref|YP_071089.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis IP 32953] gi|108808034|ref|YP_651950.1| NADH dehydrogenase subunit J [Yersinia pestis Antiqua] gi|108812304|ref|YP_648071.1| NADH dehydrogenase subunit J [Yersinia pestis Nepal516] gi|145599237|ref|YP_001163313.1| NADH dehydrogenase subunit J [Yersinia pestis Pestoides F] gi|149365547|ref|ZP_01887582.1| NADH dehydrogenase I chain J [Yersinia pestis CA88-4125] gi|153949644|ref|YP_001400440.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis IP 31758] gi|162418552|ref|YP_001606297.1| NADH dehydrogenase subunit J [Yersinia pestis Angola] gi|165925425|ref|ZP_02221257.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165937633|ref|ZP_02226195.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008411|ref|ZP_02229309.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213848|ref|ZP_02239883.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399044|ref|ZP_02304568.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422318|ref|ZP_02314071.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424390|ref|ZP_02316143.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023809|ref|YP_001720314.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis YPIII] gi|186895979|ref|YP_001873091.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis PB1/+] gi|218929633|ref|YP_002347508.1| NADH dehydrogenase subunit J [Yersinia pestis CO92] gi|229838089|ref|ZP_04458248.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895288|ref|ZP_04510462.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis Pestoides A] gi|229898649|ref|ZP_04513794.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis biovar Orientalis str. India 195] gi|229902648|ref|ZP_04517765.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis Nepal516] gi|270490171|ref|ZP_06207245.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia pestis KIM D27] gi|294504361|ref|YP_003568423.1| NADH dehydrogenase subunit J [Yersinia pestis Z176003] gi|21958433|gb|AAM85207.1|AE013767_4 NADH dehydrogenase I chain J [Yersinia pestis KIM 10] gi|45437011|gb|AAS62563.1| NADH dehydrogenase I chain J [Yersinia pestis biovar Microtus str. 91001] gi|51590180|emb|CAH21817.1| NADH dehydrogenase I chain J [Yersinia pseudotuberculosis IP 32953] gi|108775952|gb|ABG18471.1| NADH dehydrogenase I chain J [Yersinia pestis Nepal516] gi|108779947|gb|ABG14005.1| NADH dehydrogenase I chain J [Yersinia pestis Antiqua] gi|115348244|emb|CAL21172.1| NADH dehydrogenase I chain J [Yersinia pestis CO92] gi|145210933|gb|ABP40340.1| NADH dehydrogenase I chain J [Yersinia pestis Pestoides F] gi|149291960|gb|EDM42034.1| NADH dehydrogenase I chain J [Yersinia pestis CA88-4125] gi|152961139|gb|ABS48600.1| NADH-quinone oxidoreductase, J subunit [Yersinia pseudotuberculosis IP 31758] gi|162351367|gb|ABX85315.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis Angola] gi|165914383|gb|EDR32998.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922534|gb|EDR39685.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992793|gb|EDR45094.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205022|gb|EDR49502.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958824|gb|EDR55845.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051548|gb|EDR62956.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056272|gb|EDR66041.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750343|gb|ACA67861.1| NADH dehydrogenase (quinone) [Yersinia pseudotuberculosis YPIII] gi|186699005|gb|ACC89634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia pseudotuberculosis PB1/+] gi|229680095|gb|EEO76194.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis Nepal516] gi|229688197|gb|EEO80268.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis biovar Orientalis str. India 195] gi|229694455|gb|EEO84502.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701774|gb|EEO89799.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis Pestoides A] gi|262362650|gb|ACY59371.1| NADH dehydrogenase subunit J [Yersinia pestis D106004] gi|262366279|gb|ACY62836.1| NADH dehydrogenase subunit J [Yersinia pestis D182038] gi|270338675|gb|EFA49452.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia pestis KIM D27] gi|294354820|gb|ADE65161.1| NADH dehydrogenase subunit J [Yersinia pestis Z176003] gi|320014615|gb|ADV98186.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 181 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99 V F+F++MML++ ++E +++R +L S +IG Sbjct: 65 VLFVFVVMMLNLGNVE----QQERAWLKPSMWIG 94 >gi|290790888|gb|ADD63144.1| NADH-plastoquinone oxidoreductase subunit 6 [Microlaena stipoides] Length = 176 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++LL + FVA+ L++YVGA+ + +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINILIIFAVMF----VNGSE 85 Query: 86 PRKKRGF--LGSFFIGILAAELIVCAS-NFMVFSAEGELS-----------RLVFKG--N 129 K + F +G F L+VC + F + + + S ++V +G N Sbjct: 86 WSKDKNFWTIGDGF------TLLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLIN 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 NV+ IG L T + P E+ ILL+S+IGAI + Sbjct: 140 NVQQIGIHLATDFYLPFELISIILLVSLIGAITM 173 >gi|289649283|ref|ZP_06480626.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. aesculi str. 2250] Length = 169 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFTSGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A +++R +L Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88 >gi|332162381|ref|YP_004298958.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666611|gb|ADZ43255.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860326|emb|CBX70639.1| NADH-quinone oxidoreductase subunit J [Yersinia enterocolitica W22703] Length = 181 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99 V F+F++MML++ ++E +++R +L S +IG Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIG 94 >gi|70731264|ref|YP_261005.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf-5] gi|68345563|gb|AAY93169.1| NADH-quinone oxidoreductase, J subunit [Pseudomonas fluorescens Pf-5] Length = 166 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 50/81 (61%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ VVT NP++++ LI + + A F LGA F + ++ Y GA++ Sbjct: 5 FYFASGVAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFSLGAPFAGALEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRK 88 V F+F++MML++ A+ + Sbjct: 65 VLFVFVVMMLNLGPAAAQQER 85 >gi|123441684|ref|YP_001005668.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088645|emb|CAL11442.1| NADH dehydrogenase I chain J [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606460|emb|CBY27958.1| NADH-ubiquinone oxidoreductase chain J [Yersinia enterocolitica subsp. palearctica Y11] Length = 181 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99 V F+F++MML++ ++E +++R +L S +IG Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIG 94 >gi|269139722|ref|YP_003296423.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Edwardsiella tarda EIB202] gi|267985383|gb|ACY85212.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Edwardsiella tarda EIB202] gi|304559589|gb|ADM42253.1| NADH-ubiquinone oxidoreductase chain J [Edwardsiella tarda FL6-60] Length = 190 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 16/183 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +A++++ V+T NP++++ LI + + A +F LGA F + ++VY GA++ Sbjct: 5 FYAAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 V F+F++MML++ V E ++R +L +IG LI+ A +V A L V Sbjct: 65 VLFVFVVMMLNLGHSVVE--QERAWLKPGVWIGPALLSLILLA---VVLYAISTLQGGVI 119 Query: 127 KGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 G V+ +G L+ Y +E+ +LL ++ A I R+ ++ SN Sbjct: 120 DGRAVDAKAVGIALFGPYVLAVELVSMLLLAGLVVAF--------HIGREHHPGEVLSNK 171 Query: 185 DNS 187 S Sbjct: 172 AAS 174 >gi|14017626|ref|NP_114311.1| NADH dehydrogenase subunit 6 [Triticum aestivum] gi|118430356|ref|YP_874790.1| NADH-plastoquinone oxidoreductase subunit 6 [Agrostis stolonifera] gi|23821900|sp|Q95H44|NU6C_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272307|sp|A1EA62|NU6C_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|13928259|dbj|BAB47088.1| NADH dehydrogenase ND6 [Triticum aestivum] gi|118201265|gb|ABK79634.1| NADH-plastoquinone oxidoreductase subunit 6 [Agrostis stolonifera] Length = 176 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 14/148 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85 Query: 86 PRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNVENIG 135 K + + +G F ++ ++ + +++ +++V +G NNV+ IG Sbjct: 86 WSKDKNYWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163 L T + P E+ ILL+S+IGAI + Sbjct: 146 IHLATDFYLPFELISIILLVSLIGAITM 173 >gi|284042624|ref|YP_003392964.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Conexibacter woesei DSM 14684] gi|283946845|gb|ADB49589.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Conexibacter woesei DSM 14684] Length = 244 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 95/172 (55%), Gaps = 3/172 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F++ + A+ + VV +RNP YSV +L+ ++ + LFLLL AEF+A ++VY Sbjct: 1 MAEVIFFIAAIGALSGAIGVVALRNPFYSVLALVGHLLSLSALFLLLRAEFLAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV V ++F++ + D + + + + F+G+L EL + + + +GE Sbjct: 61 AGAVTVLYVFVVSYVGDGTVPLGPGGARLRNVAMLFVGMLFVELCIALLGSGLKAIDGEG 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + V E+IG+ L T++ P E++ +LL++ +GA+ ML RR R Sbjct: 121 APYVPGFGTPESIGEALLTKFLLPFELASLLLLVAAVGAV--MLARRRSGGR 170 >gi|237800534|ref|ZP_04588995.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023394|gb|EGI03451.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. oryzae str. 1_6] Length = 169 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A +++R +L Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88 >gi|296140860|ref|YP_003648103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tsukamurella paurometabola DSM 20162] gi|296028994|gb|ADG79764.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tsukamurella paurometabola DSM 20162] Length = 256 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 86/173 (49%), Gaps = 7/173 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ + A++ + VV +YS L + A +L GA F+ ++ +V Sbjct: 1 MTGEEVAFWVVAVPAVLFALGVVVASKAVYSALCLAATMILLAVAYLSQGAMFLGVVQVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VY GAV++ FLF++M++ +D +E + + G+L L+ A + Sbjct: 61 VYTGAVMMLFLFVVMLVGVDSSDSLVETLRGHRVAAAVAGTGFGLLLVTLLARAVLPVPR 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 +G + + N+VE + ++ +Y + E++ +L+ + +GA++L R + Sbjct: 121 PVDGVAPQ--YPPNSVEALADTVFVRYVWAFELTAALLITATLGAMILAHREK 171 >gi|148656358|ref|YP_001276563.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus sp. RS-1] gi|148568468|gb|ABQ90613.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus sp. RS-1] Length = 169 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 8/142 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N I+S L+ FV + L++LL A F+ +I L+VY GA+IV FLF++M+L E AE Sbjct: 25 NAIHSAIFLLINFVAISVLYVLLYAPFLFVIQLIVYAGAIIVLFLFVVMLL--GAERAED 82 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVF---SAEGELSRLVFKGNNVENIGKVLYTQYA 143 ++R F +G+ A +++ ++ SA ++ F E I + L+T Y Sbjct: 83 TRER-FAWQRPLGVSLAAILLGLLGYLALRNPSAGATVADQHFAAP--ERIAEALFTTYL 139 Query: 144 YPLEISGFILLLSMIGAIVLML 165 P EI+ F+LL +++G +VL + Sbjct: 140 LPFEITAFLLLAAIVGVVVLHM 161 >gi|330889652|gb|EGH22313.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. mori str. 301020] Length = 169 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A +++R +L Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88 >gi|289625434|ref|ZP_06458388.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866830|gb|EGH01539.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 169 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A +++R +L Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88 >gi|29349470|ref|NP_812973.1| NADH dehydrogenase I subunit J [Bacteroides thetaiotaomicron VPI-5482] gi|253570160|ref|ZP_04847569.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6] gi|29341379|gb|AAO79167.1| NADH dehydrogenase I, chain J [Bacteroides thetaiotaomicron VPI-5482] gi|251840541|gb|EES68623.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6] Length = 170 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 15/175 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI---GILAAELIVCASNFMVFSAE 118 Y G ++V ++F I++ + + AE K+ FL F G+ I NF+ Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFLAGLFTMVAGLAIILFITLKHNFL----- 118 Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRR 169 + + LV N+ IG L + +Y Y P E +LL +IG I M+ +R Sbjct: 119 -QTTNLVPLEINIHTIGNALLSSDKYGYILPFEAISILLLACIIGGI--MIARKR 170 >gi|238751240|ref|ZP_04612734.1| NADH-quinone oxidoreductase subunit J [Yersinia rohdei ATCC 43380] gi|238710514|gb|EEQ02738.1| NADH-quinone oxidoreductase subunit J [Yersinia rohdei ATCC 43380] Length = 181 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 58/92 (63%), Gaps = 2/92 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 V F+F++MML++ E +++ S +IG Sbjct: 65 VLFVFVVMMLNLG--KVEEQEREWLKPSVWIG 94 >gi|298487556|ref|ZP_07005598.1| NADH-ubiquinone oxidoreductase chain J [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157940|gb|EFH99018.1| NADH-ubiquinone oxidoreductase chain J [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 169 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A +++R +L Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88 >gi|238794599|ref|ZP_04638206.1| NADH-quinone oxidoreductase subunit J [Yersinia intermedia ATCC 29909] gi|238726085|gb|EEQ17632.1| NADH-quinone oxidoreductase subunit J [Yersinia intermedia ATCC 29909] Length = 181 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFL-GSFFIG 99 V F+F++MML++ ++E +++R +L S +IG Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIG 94 >gi|238788646|ref|ZP_04632438.1| NADH-quinone oxidoreductase subunit J [Yersinia frederiksenii ATCC 33641] gi|238723241|gb|EEQ14889.1| NADH-quinone oxidoreductase subunit J [Yersinia frederiksenii ATCC 33641] Length = 181 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 6/94 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99 V F+F++MML++ ++E +++R +L S +IG Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPSLWIG 94 >gi|58045434|gb|AAW65044.1| NADH dehydrogenase subunit 6 [Chorda filum] Length = 311 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 + L +F+ + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ Sbjct: 7 YILITFLGVCLGIKVTSTQNPVYSGLYLVLLFFLGSAIAFLLGLEFMALLFLLVYAGAIA 66 Query: 68 VFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAA 103 V LF++MMLD+ IE KK+ L + +G+ A Sbjct: 67 VLVLFVVMMLDVKAIEKPWSAKKKRLL--YLVGVFFA 101 >gi|298384969|ref|ZP_06994528.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 1_1_14] gi|298262113|gb|EFI04978.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 1_1_14] Length = 170 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 15/175 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI---GILAAELIVCASNFMVFSAE 118 Y G ++V ++F I++ + + AE K+ FL F G+ I NF+ Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFLAGLFTMIAGLAIILFITLKHNFL----- 118 Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRR 169 + + LV N+ IG L + +Y Y P E +LL +IG I M+ +R Sbjct: 119 -QTTNLVPLEINIHTIGNALLSSDKYGYILPFEAISILLLACIIGGI--MIARKR 170 >gi|328952914|ref|YP_004370248.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca acetoxidans DSM 11109] gi|328453238|gb|AEB09067.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca acetoxidans DSM 11109] Length = 173 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 18/173 (10%) Query: 11 FSFMAIIS-----SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 SF+ +++ + + V RN ++V L + AG+F+ L + F+AM+ +++YVGA Sbjct: 10 LSFLGVLAVTFGGAIIAVGARNIFHNVLGLALSLFGVAGIFVYLNSPFLAMMEILIYVGA 69 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF---IGILAAELIVCASNFMVFSAEGELS 122 + + F IM+ + PRK G+ + L L++ ++++ S G+ Sbjct: 70 ICIAICFAIMLSEPLYLPKPPRKPLKIAGAGLGAGVVFLMLSLLIKKTDWIPASVRGD-- 127 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++ IG L T+YA E+ +LL++M+GAIV R R D Sbjct: 128 -----DWSIATIGHYLLTRYALIFEVISLVLLVAMLGAIV---NARNGRNRAD 172 >gi|66046434|ref|YP_236275.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae B728a] gi|289679208|ref|ZP_06500098.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae FF5] gi|302185031|ref|ZP_07261704.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae 642] gi|63257141|gb|AAY38237.1| NADH dehydrogenase (quinone) [Pseudomonas syringae pv. syringae B728a] gi|330900635|gb|EGH32054.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. japonica str. M301072PT] gi|330954555|gb|EGH54815.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae Cit 7] gi|330972915|gb|EGH72981.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. aceris str. M302273PT] gi|330981362|gb|EGH79465.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 169 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A +++R +L Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88 >gi|330850678|ref|YP_004376559.1| NADH-plastoquinone oxidoreductase subunit 6 [Ptilidium pulcherrimum] gi|302024807|gb|ADK89653.1| NADH-plastoquinone oxidoreductase subunit 6 [Ptilidium pulcherrimum] Length = 206 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 38/194 (19%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + + +YS F L F F A L+LLL ++FVA +++YVGA+ V +F +M Sbjct: 20 ILGSLGVVLLNDIVYSAFLLGFVFACVALLYLLLDSDFVAAAQVLIYVGAINVLIVFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFI------GILAAELIVCASNFMVFS------------- 116 +++ + + FF+ GI +A +C S F++ + Sbjct: 80 LINKNNPII-----------FFLVWTIGDGITSA---ICTSIFLLLNNTISNTSWSKIYL 125 Query: 117 -AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 A+ + + N+ IG L T++ P E+ ILL+++IGAI L R + + Sbjct: 126 VAQLNKNTELITTENIRRIGLELLTKFLIPFELMSIILLIALIGAITL----ARGEQVIN 181 Query: 176 ISKQLESNPDNSIV 189 + +++ N +NSI+ Sbjct: 182 LEEEVLRNKNNSII 195 >gi|256593092|gb|ACV03501.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D3] Length = 67 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 49/68 (72%), Gaps = 1/68 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VGAVIVFF 70 VGA+ + F Sbjct: 60 VGAIAILF 67 >gi|254032034|ref|YP_654089.2| NADH dehydrogenase subunit 6 [Trichoplax adhaerens] Length = 284 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 6/57 (10%) Query: 28 PIYS------VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 PIYS VF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ Sbjct: 17 PIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIP 73 Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 28/42 (66%) Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 G+N+E IG VLY Y Y + FILL++MIGAIVL L+ Sbjct: 241 GSNLEAIGSVLYINYYYVFILVSFILLVAMIGAIVLGLQSSN 282 >gi|28870537|ref|NP_793156.1| NADH dehydrogenase I subunit J [Pseudomonas syringae pv. tomato str. DC3000] gi|213970027|ref|ZP_03398159.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato T1] gi|301381382|ref|ZP_07229800.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato Max13] gi|302062153|ref|ZP_07253694.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato K40] gi|302130463|ref|ZP_07256453.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853785|gb|AAO56851.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213925131|gb|EEB58694.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato T1] gi|330875765|gb|EGH09914.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965584|gb|EGH65844.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017279|gb|EGH97335.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 169 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A +++R +L Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88 >gi|296268313|ref|YP_003650945.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Thermobispora bispora DSM 43833] gi|296091100|gb|ADG87052.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobispora bispora DSM 43833] Length = 176 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 21/181 (11%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F L +A+ S LVVT + +++ L+ F AG +L+L AEFVA + +++YV Sbjct: 11 PEIVFLLLGLVALGSGVLVVTTKRLVHAALWLVVCFGALAGCYLVLTAEFVAWVQVLIYV 70 Query: 64 GAVIVFFLFIIMMLDIDIEVAEP-----RKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GAV+V LF IM+ +E R + G+L +I S F A Sbjct: 71 GAVVVLLLFGIMLTRAPTGRSEELDSGNRWAAALVALATAGVLVTVVI---SGFRDAYAP 127 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 E R + IG ++ + P E+ +LL ++IGAIV I R DI+ Sbjct: 128 LEPGR-----GSAGEIGAGIFRTWVLPFEVLSLLLLAALIGAIV--------ISRTDITG 174 Query: 179 Q 179 + Sbjct: 175 R 175 >gi|71737794|ref|YP_275287.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558347|gb|AAZ37558.1| NADH-quinone oxidoreductase, J subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323796|gb|EFW79880.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. glycinea str. B076] gi|320327935|gb|EFW83940.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. glycinea str. race 4] gi|330881175|gb|EGH15324.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. glycinea str. race 4] Length = 169 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A +++R +L Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88 >gi|283852193|ref|ZP_06369466.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio sp. FW1012B] gi|283572419|gb|EFC20406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio sp. FW1012B] Length = 171 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 9/171 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F ++ + + L V + + ++ L+ + AGL+LLL A+FVA++ ++ Sbjct: 4 MYLGQFAFAFYTLIILAGGLLAVGAQGLVRAMLGLVVSLFGVAGLYLLLLADFVALMQIL 63 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSA- 117 +YVGAV + F IM+ + E G F GIL A +V A + F A Sbjct: 64 IYVGAVTILMFFAIMLTRASADGGEAE------GPGFAGILRAIPAFLVPAGILVPFLAV 117 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G K + + +G L Y P E+ +LL +M GA++L R Sbjct: 118 HGTPGFATPKNVSPDQLGAGLLGPYTLPFELISVVLLAAMAGAVLLAFEKR 168 >gi|94962399|gb|ABF48517.1| NADH dehydrogenase subunit 6 [Trichoplax adhaerens] Length = 308 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 6/58 (10%) Query: 27 NPIYS------VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 PIYS VF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ Sbjct: 40 TPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIP 97 Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 28/42 (66%) Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 G+N+E IG VLY Y Y + FILL++MIGAIVL L+ Sbjct: 265 GSNLEAIGSVLYINYYYVFILVSFILLVAMIGAIVLGLQSSN 306 >gi|257485448|ref|ZP_05639489.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987950|gb|EGH86053.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010719|gb|EGH90775.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 169 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A +++R +L Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88 >gi|56791578|gb|AAW30327.1| NADH dehydrogenase subunit 6 [Agave attenuata] Length = 158 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 11/140 (7%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +VV +NP++SV I F + +GL LLLG +F AMI+ VVY+GA+ V FLF++ Sbjct: 11 ALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVYIGAIAVSFLFVV 70 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN-----FMVFSAEGELSRLVFKG 128 MM +I I R S IG IL E+ N L V+ G Sbjct: 71 MMFNIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYTVYAG 130 Query: 129 -----NNVENIGKVLYTQYA 143 N+E +G +LYT Y+ Sbjct: 131 KVRSWTNLETLGNLLYTYYS 150 >gi|238753746|ref|ZP_04615107.1| NADH-quinone oxidoreductase subunit J [Yersinia ruckeri ATCC 29473] gi|238707982|gb|EEQ00339.1| NADH-quinone oxidoreductase subunit J [Yersinia ruckeri ATCC 29473] Length = 181 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 91/164 (55%), Gaps = 9/164 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 V F+F++MML++ +V E ++R +L S +IG L++ + S+ L+ Sbjct: 65 VLFVFVVMMLNLG-KVDE--QERAWLKPSVWIGPALLALVLLSVLIYAISS---LTDQGI 118 Query: 127 KGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHK 162 >gi|330503263|ref|YP_004380132.1| NADH dehydrogenase subunit J [Pseudomonas mendocina NK-01] gi|328917549|gb|AEB58380.1| NADH dehydrogenase subunit J [Pseudomonas mendocina NK-01] Length = 169 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +A+ S+ VVT NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYFAAGVAVASTVGVVTNTNPVHALLYLIVSLLAVSMVFFALGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 V F+F++MML++ A+ +++R ++G Sbjct: 65 VLFVFVVMMLNLGPAAAD-QERRWLTPGIWVG 95 >gi|319738248|emb|CBJ18024.1| NADH dehydrogenase subunit 6 [Ectocarpus siliculosus] Length = 305 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + S + I V + +NP+YS L+ F +G+ LLG EF+A++ L+VY GA+ Sbjct: 7 FIIISCLGAILGVKVTSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIA 66 Query: 68 VFFLFIIMMLDID-IEVAEPRKKR 90 V LF++MMLD+ IE KK+ Sbjct: 67 VLVLFVVMMLDVKAIENPWSAKKK 90 Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVK 194 +LY+ YA L I+G ILL++M+GAI L L+ + + +QL N++ +K K Sbjct: 236 LLYSTYAILLIIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAVFSIKEK 290 >gi|146221440|gb|ABQ11840.1| NADH dehydrogenase subunit 6 [Iphiteon panicea] Length = 176 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 17/161 (10%) Query: 30 YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 YS LI F+N + LF+LL EF+A++ ++VY GA+ + FLF IMML++ K+ Sbjct: 24 YSAVWLILTFINISLLFILLEIEFIAILLIIVYAGAIAILFLFAIMMLNLH------TKE 77 Query: 90 RGFLGSFFIGILAAELIVCASNFM------VFSAEGELSRLVFKGNNVENIGKVLYTQYA 143 + + + I A +I + +++ ++ L +N E I +LY+ Y Sbjct: 78 QTSDSTHLLPINATIIISVIIIGINSSSHKLYNTTPQIKTL----DNTETISSLLYSNYT 133 Query: 144 YPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQLESN 183 IS ILL+SMI IV++ + + IK+Q +Q ++N Sbjct: 134 PWFLISSIILLISMIATIVIIQKEQINSIKQQLFKQQNKTN 174 >gi|15597841|ref|NP_251335.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PAO1] gi|107102165|ref|ZP_01366083.1| hypothetical protein PaerPA_01003215 [Pseudomonas aeruginosa PACS2] gi|116050632|ref|YP_790549.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa UCBPP-PA14] gi|152984819|ref|YP_001347925.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PA7] gi|218891194|ref|YP_002440060.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa LESB58] gi|254235627|ref|ZP_04928950.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa C3719] gi|254241075|ref|ZP_04934397.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 2192] gi|313107684|ref|ZP_07793866.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 39016] gi|81622298|sp|Q9I0J3|NUOJ_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|9948714|gb|AAG06033.1|AE004693_4 NADH dehydrogenase I chain J [Pseudomonas aeruginosa PAO1] gi|115585853|gb|ABJ11868.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa UCBPP-PA14] gi|126167558|gb|EAZ53069.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa C3719] gi|126194453|gb|EAZ58516.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 2192] gi|150959977|gb|ABR82002.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa PA7] gi|218771419|emb|CAW27186.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa LESB58] gi|310880368|gb|EFQ38962.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 39016] Length = 166 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 52/82 (63%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +A++++ V+T NP++++ LI + + + F LGA F + ++VY GA++ Sbjct: 5 FYFAAGVAVLATLRVITNSNPVHALLYLIISLLAISMTFFSLGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ V E +K Sbjct: 65 VLFVFVVMMLNLGPAVVEQERK 86 >gi|300723698|ref|YP_003713005.1| NADH dehydrogenase I subunit J [Xenorhabdus nematophila ATCC 19061] gi|297630222|emb|CBJ90873.1| NADH dehydrogenase I chain J [Xenorhabdus nematophila ATCC 19061] Length = 175 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 59/98 (60%), Gaps = 4/98 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYVAGLVAILATLRVITHTNPVHALLYLIISLLALSVVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRK----KRGFLGSFFIGIL 101 V F+F++MML++ V E + R ++G + I+ Sbjct: 65 VLFVFVVMMLNLGKSVVEQERLWLQPRAWIGPSILSIV 102 >gi|296388894|ref|ZP_06878369.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PAb1] Length = 166 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 52/82 (63%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +A++++ V+T NP++++ LI + + + F LGA F + ++VY GA++ Sbjct: 5 FYFAAGVAVLATLRVITNSNPVHALLYLIISLLAISMTFFSLGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ V E +K Sbjct: 65 VLFVFVVMMLNLGPAVVEQERK 86 >gi|11465920|ref|NP_046137.1| NADH dehydrogenase subunit 6 [Chlamydomonas moewusii] gi|2865266|gb|AAC39349.1| NADH dehydrogenase subunit 6 [Chlamydomonas moewusii] Length = 171 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 19/151 (12%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 R+P S+ + F+NA+ + L+LG EF+A++ ++VYVGA+ V FLF+IM+L +I AE Sbjct: 23 RSPFMSLMFAVMLFINASIVLLMLGFEFLALVNMLVYVGALAVLFLFVIMLL--EIPSAE 80 Query: 86 PRK-KRGFLGSFFIGILAAELIVCASNFM------------VFSAEGELSRLVFKGNNVE 132 R RG+ GIL + + S G + L ++ Sbjct: 81 LRAYHRGWSTLALFGILGCWRYASVAPITKTGALMDTFKSPIMSVAGFVPTL----ESIN 136 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +G Y +YA L I+ +L +++ GA+VL Sbjct: 137 YVGHAFYIRYADVLIINSLVLTVALFGALVL 167 >gi|330958151|gb|EGH58411.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. maculicola str. ES4326] Length = 169 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVITNTNPLHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ A +++R +L Sbjct: 65 VLFVFVVMMLNLG--PASVQQERAWL 88 >gi|194033199|ref|YP_002000538.1| NADH dehydrogenase subunit 6 [Brachypodium distachyon] gi|221272311|sp|B3TNA2|NU6C_BRADI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|193075607|gb|ACF08690.1| NADH dehydrogenase subunit 6 [Brachypodium distachyon] Length = 176 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 20/151 (13%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-----------RLVFKG--NNVE 132 K + S+ IG L+ F + + + S ++V +G NNV+ Sbjct: 86 WSKDK---NSWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 IG L T + P E+ ILL+S+IGAI + Sbjct: 143 QIGIHLATDFYLPFELISIILLVSLIGAITM 173 >gi|57923576|gb|AAW59532.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana] gi|57923580|gb|AAW59535.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana] gi|58045456|gb|AAW65055.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana] Length = 311 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ FL Sbjct: 81 IESPWSAKKKRFL 93 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N++ VK KS Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAVFSVKEKS 297 >gi|319412295|gb|ADV41832.1| NADH dehydrogenase subunit 6 [Bigelowiella natans] Length = 193 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 13/190 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L + +IS+ LV+ RN +Y++ L+ F +A L + +G EF+ + +VVYVGA+ + Sbjct: 3 LLAIFTLISATLVLISRNIVYALAFLVTTFFLSAVLLINIGLEFLGYVLIVVYVGAIAIL 62 Query: 70 FLFIIMMLDI---DIEVAEPRKKRGFLG-----SFFIGILAAELIVCA---SNFMVFSAE 118 FLF++M LDI ++ ++ R G+ +FF +L + A + F FS Sbjct: 63 FLFVVMTLDITNEELASSQVRNSGGYTSHTVALAFFFFVLWSIYSTAAPIDALFEKFSFI 122 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + V + + LYT L ++G +LL++M+GA++L L R QD K Sbjct: 123 QDPWVPVLHSGGAGAVAQTLYTHNFLYLFLAGLLLLVAMVGAVLLALPPVR--LSQDSYK 180 Query: 179 QLESNPDNSI 188 Q P ++ Sbjct: 181 QAHRQPAKAV 190 >gi|220904924|ref|YP_002480236.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869223|gb|ACL49558.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 214 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 53/82 (64%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +FF + + ++ L + +RNP++ V ++ FV+ A ++L L AEF+A + +VVY G Sbjct: 4 EIFFLYCAVVIVVCGILSIRLRNPVHCVLLVLLLFVHMAAVYLTLQAEFLAAVQIVVYAG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEP 86 AV+V +LF++ ++++ E+ P Sbjct: 64 AVLVMYLFVVFLVNLKREMRMP 85 >gi|269128577|ref|YP_003301947.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Thermomonospora curvata DSM 43183] gi|268313535|gb|ACY99909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermomonospora curvata DSM 43183] Length = 184 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F L +A+ S+ LVVT R +++ L+ AF AG +L+L AEFVA ++ Sbjct: 1 MTAAEVVFALLGVVAVGSAVLVVTTRQLVHAALWLVVAFGALAGCYLVLTAEFVAWTQVL 60 Query: 61 VYVGAVIVFFLFIIMM 76 +YVGAV+V LF IM+ Sbjct: 61 IYVGAVVVLLLFGIML 76 >gi|292385579|gb|ADE22107.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 7/101 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 IE KK+ FL ++GIL L VC +++S E +L Sbjct: 81 IERPWSVKKKRFL---YLGIL---LFVCFLIAVIYSKELQL 115 >gi|118430440|ref|YP_874705.1| NADH-plastoquinone oxidoreductase subunit 6 [Hordeum vulgare subsp. vulgare] gi|126302578|sp|O98693|NU6C_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|118201094|gb|ABK79465.1| NADH-plastoquinone oxidoreductase subunit 6 [Hordeum vulgare subsp. vulgare] Length = 176 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 14/148 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85 Query: 86 PRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNVENIG 135 K + + +G F ++ + + +++ +++V +G NNV+ IG Sbjct: 86 WSKDKNYWTIGDGFTSLVCITFVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163 L T + P E+ ILL+S+IGAI + Sbjct: 146 IHLATDFYLPFELISIILLVSLIGAITM 173 >gi|156742069|ref|YP_001432198.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus castenholzii DSM 13941] gi|156233397|gb|ABU58180.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus castenholzii DSM 13941] Length = 217 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F +F+ + + S+ L VTV+N +++ LI +F L+LL+ AEF+ + +++YVG Sbjct: 6 TVLFLIFAALILASAILTVTVKNIVHAALWLISSFFGVGALYLLMEAEFLGVAQVLIYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 A+ + LF IM L D+E ++ R+ R ++ L LIV V + +L Sbjct: 66 ALSILILFAIM-LTRDLEGSQNRQLTPRWWIALIVPAALFGLLIVPT----VMTHAWQLP 120 Query: 123 RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G + + IG +Y E++ +L ++MIGAIV+ Sbjct: 121 PPPPTGQPPAISGAQQIGTAFMREYLLSFEVAAILLTVAMIGAIVI 166 >gi|304407743|ref|ZP_07389394.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus curdlanolyticus YK9] gi|304343226|gb|EFM09069.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus curdlanolyticus YK9] Length = 173 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S + I S L+V+ ++ V SL F+ G+F++L AEF+A + +++Y GAV Sbjct: 13 FFVLSVLMITGSVLMVSFTKVVHMVLSLAAVFLGVGGMFIMLDAEFLAFVQVLIYAGAVS 72 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL------IVCASNFMVFSAEGEL 121 + +F IMM + E K L + A L ++ A++F S Sbjct: 73 ILMIFGIMMTNHQEASGESVKP---LRETLAAVAAIALFGLLFFVIQAADFTDTSGAAPP 129 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +N IG++L+ Y P E+ +L ++ IGAIVL R D Sbjct: 130 P----AADNTLAIGELLFHGYIVPFELVSVLLTVAFIGAIVLA-RKEAD 173 >gi|292385587|gb|ADE22113.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 7/101 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 IE KK+ FL ++GIL L VC +++S E +L Sbjct: 81 IERPWSVKKKRFL---YLGIL---LFVCFLIAVIYSKELQL 115 >gi|292385572|gb|ADE22102.1| NADH dehydrogenase subunit 6 [Lessonia variegata] gi|292385583|gb|ADE22110.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 7/101 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 IE KK+ FL ++GIL L VC +++S E +L Sbjct: 81 IERPWSVKKKRFL---YLGIL---LFVCFLIAVIYSKELQL 115 >gi|292385591|gb|ADE22116.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 7/101 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 IE KK+ FL ++GIL L VC +++S E +L Sbjct: 81 IERPWSVKKKRFL---YLGIL---LFVCFLIAVIYSKELQL 115 >gi|238784992|ref|ZP_04628990.1| NADH-quinone oxidoreductase subunit J [Yersinia bercovieri ATCC 43970] gi|238714108|gb|EEQ06122.1| NADH-quinone oxidoreductase subunit J [Yersinia bercovieri ATCC 43970] Length = 181 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 63/94 (67%), Gaps = 6/94 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLG-SFFIG 99 V F+F++MML++ ++E +++R +L + +IG Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPTLWIG 94 >gi|292385576|gb|ADE22105.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 286 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 7/101 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 IE KK+ FL ++GIL L VC +++S E +L Sbjct: 81 IERPWSVKKKRFL---YLGIL---LFVCFLIAVIYSKELQL 115 >gi|297565705|ref|YP_003684677.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Meiothermus silvanus DSM 9946] gi|296850154|gb|ADH63169.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus silvanus DSM 9946] Length = 185 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 7/132 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-ID 80 VVT RN +++ +LI F+ AG+++ L A F+ M+ ++VY GA++V FLF+IM+L Sbjct: 19 VVTARNAVHAALALIANFLVLAGVYVALDARFLGMVQVIVYAGAIVVLFLFVIMLLSAAQ 78 Query: 81 IEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 EV P + + + LA L++ + N V G L+ G + IG VLY Sbjct: 79 AEVGINPLSRLTPVAALGALALAVVLMLASRNVPVPPQVGNLN-----GGLPQAIGPVLY 133 Query: 140 TQYAYPLEISGF 151 + Y L GF Sbjct: 134 GPWLYALLAVGF 145 >gi|5042150|emb|CAB44670.1| NDH-G protein [Nostoc sp. PCC 7120] Length = 202 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 4/166 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M I + VV + +YS F L F++ AG++LLL +FVA ++VY Sbjct: 7 VQVVPFGILATMLIGPALGVVLATSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + P G + I++ L S MV + S Sbjct: 67 VGAVNVLILFAIMLVNKRQDFT-PYPSAG-IRKVLTAIVSVGLFALLST-MVLATPWAYS 123 Query: 123 RLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 G+ ++ IG+ ++ + P E++ +LL++M+GAI+L R Sbjct: 124 TTPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARRE 169 >gi|158251753|ref|YP_001504367.1| NADH dehydrogenase subunit 6 [Pleurotus ostreatus] gi|122893354|gb|ABM67626.1| NADH dehydrogenase subunit 6 [Pleurotus ostreatus] Length = 206 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 49/80 (61%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + + + SS +T +NP+ S+ +I FV AAG + +G F+ + +V+Y Sbjct: 1 MTTFFVNILALGTLFSSVFAITSKNPVISIIFVIATFVQAAGYLIFIGVNFIGISYIVIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIE 82 VGA+ V FLF+IMM++I + Sbjct: 61 VGAIAVLFLFVIMMINIKLT 80 >gi|118579076|ref|YP_900326.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pelobacter propionicus DSM 2379] gi|118580055|ref|YP_901305.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pelobacter propionicus DSM 2379] gi|118581585|ref|YP_902835.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pelobacter propionicus DSM 2379] gi|118501786|gb|ABK98268.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379] gi|118502765|gb|ABK99247.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379] gi|118504295|gb|ABL00778.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379] Length = 164 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +F FS +A+I + LV+T+R P+ +L+ + AG++ LGA +AM +++Y Sbjct: 1 MIDVFIAFFSLLAVIFAALVLTLRQPMRCALALVSHMICLAGIYAALGAHVIAMFQVLIY 60 Query: 63 VGAVIVFFLFIIMMLDI-DIEVAEPRKKR 90 VGAV+VF ++ IM+LD D P ++ Sbjct: 61 VGAVMVFMVYTIMLLDDRDDSYRHPYARK 89 >gi|71892258|ref|YP_277992.1| NADH dehydrogenase I chain J [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796364|gb|AAZ41115.1| NADH dehydrogenase I chain J [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 183 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 15/182 (8%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ AI+S+ V+ NP+ ++ LI +F++ + F LGA F A + ++VY GA++ Sbjct: 5 FYISGITAILSTICVILHYNPMRALLYLIVSFLSISCNFFSLGASFAAALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-------SFFIGILAAELIVCASNFMVFSAEGE 120 + F+F IMML+ + +K+ FL + +GIL A L+ ++ F + + Sbjct: 65 ILFVFAIMMLNTKNIIFGIQKESRFLNPILCCGSALLVGILFAVLL-----YISFVLKDD 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI-SKQ 179 + + + +G L+ Y +E++ F+LL ++I V L + I S Q Sbjct: 120 FINVNNSIIDSKQVGVALFGPYILTVELASFLLLGALIS--VFHLSQNNTLSDDCIDSTQ 177 Query: 180 LE 181 L+ Sbjct: 178 LK 179 >gi|229591261|ref|YP_002873380.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens SBW25] gi|312961694|ref|ZP_07776192.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Pseudomonas fluorescens WH6] gi|229363127|emb|CAY50148.1| NADH dehydrogenase I chain J [Pseudomonas fluorescens SBW25] gi|311283953|gb|EFQ62536.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Pseudomonas fluorescens WH6] Length = 167 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 1/81 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPR 87 V F+F++MML++ VA+ R Sbjct: 65 VLFVFVVMMLNLGPASVAQER 85 >gi|309773934|ref|NP_075423.2| ND6 protein [Yarrowia lipolytica] gi|54036245|sp|Q9B6E9|NU6M_YARLI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|12718792|emb|CAC28088.2| ND6 protein [Yarrowia lipolytica] Length = 185 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 25/177 (14%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F+AI+ + +++ +NP+ S+ +I FV AA L+G +++ +++Y+GA+ V FLF Sbjct: 14 FLAILCTIFIISAKNPMVSILYMIALFVIAAMYLYLIGLGIFSLLYIMIYIGAIAVLFLF 73 Query: 73 IIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--GN 129 II +LDI+ E++ R +L + +++ S M++S + L + + GN Sbjct: 74 IITLLDINSTELSVKSNIRDLP-----LVLISLIVLTISGLMIYSNDSILINKLLEAFGN 128 Query: 130 -----------NVEN------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 N+EN IG VL T A+ L + +LLL +IG I + ++H+ Sbjct: 129 DYNTIITQDWFNIENTTLLTTIGNVLLTNNAFILLVLAIVLLLGIIGPISITMKHKE 185 >gi|238798412|ref|ZP_04641893.1| NADH-quinone oxidoreductase subunit J [Yersinia mollaretii ATCC 43969] gi|238717726|gb|EEQ09561.1| NADH-quinone oxidoreductase subunit J [Yersinia mollaretii ATCC 43969] Length = 181 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 63/94 (67%), Gaps = 6/94 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFL-GSFFIG 99 V F+F++MML++ ++E +++R +L + +IG Sbjct: 65 VLFVFVVMMLNLGNVE----QQERDWLKPTLWIG 94 >gi|268591143|ref|ZP_06125364.1| NADH-quinone oxidoreductase, J subunit [Providencia rettgeri DSM 1131] gi|291313369|gb|EFE53822.1| NADH-quinone oxidoreductase, J subunit [Providencia rettgeri DSM 1131] Length = 180 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 56/86 (65%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ L+ + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAGLVAILATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ V E ++R +L Sbjct: 65 VLFVFVVMMLNLGRSVQE--QERAWL 88 >gi|27464562|gb|AAO16134.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-NZ2] Length = 147 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 7/144 (4%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+E IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185 +L + + L S D Sbjct: 114 LLAKQPNSPFVYNPHGESLRSRQD 137 >gi|313903489|ref|ZP_07836880.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermaerobacter subterraneus DSM 13965] gi|313466310|gb|EFR61833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermaerobacter subterraneus DSM 13965] Length = 246 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F + + + ++ ++ VVT +S L FV AGLF+LL A A++ ++ Sbjct: 1 MSGTAVIFAVLAAVVLLGAWRVVTSEQIAHSALFLGLTFVGMAGLFILLKAPTFALLHVL 60 Query: 61 VYVGAVIVFFLFIIMMLDI-------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 VYVGA++ +F IM+ D D+ + E R +R FL ++ + V + + Sbjct: 61 VYVGAILTVVVFAIMLSDPEELRGAGDLALGE-RLRRRFLSPYYGWLPVVVAGVLVAVIL 119 Query: 114 VFSAEGELSRLVFK---GNNVENIGKVLYTQYAYPLEIS 149 A +L R+ +++ IG ++T+YA P E++ Sbjct: 120 AGLAAAQLPRVPLGEPVADDLRAIGGEMFTRYAIPFEVA 158 >gi|94676511|ref|YP_588817.1| NADH-quinone oxidoreductase, chain J [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219661|gb|ABF13820.1| NADH-quinone oxidoreductase, chain J [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 165 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 48/76 (63%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L Y F +AI S+ V+T P++++ LI + AG+F ++GA F + ++VY G Sbjct: 2 ELALYFFGLVAIFSALRVITHNKPMHALLYLIITILAIAGVFFVIGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDID 80 AV+V F+F++MM++I Sbjct: 62 AVVVLFIFVVMMINIH 77 >gi|317123874|ref|YP_004097986.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043] gi|315587962|gb|ADU47259.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043] Length = 172 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 17/154 (11%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F + + + + L VT + +++ L+ + AG +++LG E V ++ L+ Sbjct: 1 MTSREIAFLIVGTITALCAILAVTTKQVVHAALWLLVSLGALAGAYVVLGQELVGIVQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI----EVAEPRKKR---GFLGSFFIGILAAELIVCASNFM 113 VYVGA++V LF +M+ I E+ PR +R LG +LAA L+ Sbjct: 61 VYVGAIVVLVLFALMLTRAPIGRHSEIDTPRWERVLASALGGATTALLAAVLL------P 114 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLE 147 +F++ +RL IG+ ++ + +P E Sbjct: 115 MFAS----ARLAEDAPATPAIGEAIFGTWVWPFE 144 >gi|212712284|ref|ZP_03320412.1| hypothetical protein PROVALCAL_03370 [Providencia alcalifaciens DSM 30120] gi|212685030|gb|EEB44558.1| hypothetical protein PROVALCAL_03370 [Providencia alcalifaciens DSM 30120] Length = 181 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 56/86 (65%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +A++++ V+T NP++++ L+ + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ V E ++R +L Sbjct: 65 VLFVFVVMMLNLGRSVQE--QERAWL 88 >gi|4150871|emb|CAA09814.1| ndhG protein [Hordeum vulgare subsp. vulgare] Length = 176 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 14/148 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85 Query: 86 PRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNVENIG 135 K + + +G F ++ + + +++ +++V +G NNV+ IG Sbjct: 86 WSKDKNYWTIGDGFTSLVCITFVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163 L T + P E+ ILL+S+IGAI + Sbjct: 146 IHLATDFYLPFELISIILLVSLIGAITM 173 >gi|261346149|ref|ZP_05973793.1| NADH-quinone oxidoreductase, J subunit [Providencia rustigianii DSM 4541] gi|282565802|gb|EFB71337.1| NADH-quinone oxidoreductase, J subunit [Providencia rustigianii DSM 4541] Length = 180 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 56/86 (65%), Gaps = 2/86 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +A++++ V+T NP++++ L+ + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL 93 V F+F++MML++ V E ++R +L Sbjct: 65 VLFVFVVMMLNLGRSVQE--QERAWL 88 >gi|160688734|gb|ABX45150.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum] Length = 299 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-IEVAE 85 NPIYSV +LI F A + ++L EF+A I ++V VGAV V FLFIIMM++I+ +E+ + Sbjct: 25 NPIYSVLNLIIIFWCYACILIILDMEFLACIFILVNVGAVAVLFLFIIMMININVVEIKD 84 Query: 86 PRKK 89 KK Sbjct: 85 NLKK 88 >gi|17351909|dbj|BAB78595.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis] gi|189304013|gb|ACD85988.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis] gi|261498876|gb|ACX84830.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis] gi|261888215|gb|ACY06069.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis] Length = 162 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 13/152 (8%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F+ + S V ++P S+ + F+N++ + ++LG EF+A++ L+VYVGA+ V FLF Sbjct: 9 FLCALLSIAVAYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLF 68 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---- 128 +IM+L+I E R LG +GIL L N ++ SR + G Sbjct: 69 VIMLLEIP--ATELRAYS--LGWSSLGILVFIL-----NGVIQVTPSMGSRGIISGLPGA 119 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 ++ N+G LY +A L ++ F+L +++ GA Sbjct: 120 ESISNLGHALYLYFADLLILNSFVLTVALFGA 151 >gi|218508902|ref|ZP_03506780.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli Brasil 5] Length = 136 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 5/138 (3%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 +L+ F+N + +F+LL A F+A+I + VYVGA++V FLF+IMM+D+ E R G Sbjct: 2 ALMACFLNISAIFVLLEAPFLAVIQIFVYVGAIMVLFLFVIMMIDVR-EAVLQRFLPG-- 58 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVF--KGNNVENIGKVLYTQYAYPLEISGF 151 G+ +L L V +++S + V G+ + + L+ Y P E + Sbjct: 59 GNLPALVLVVLLGVEMLVLVLWSDRFSVIEPVAMRGGDQIRQLSTTLFADYLLPFEAASV 118 Query: 152 ILLLSMIGAIVLMLRHRR 169 ILL +++GAIVL + + Sbjct: 119 ILLAALVGAIVLARKEQE 136 >gi|332702764|ref|ZP_08422852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio africanus str. Walvis Bay] gi|332552913|gb|EGJ49957.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio africanus str. Walvis Bay] Length = 168 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 7/145 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI--EV 83 N + ++ LI AG+++LL A FVA++ ++VYVGAV V F IM+ E Sbjct: 27 HNMVRALLGLILTMFGVAGMYMLLNAPFVALMQVLVYVGAVAVLVFFAIMLTRTPTGGEE 86 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143 ++P R +L + +L A L A + V+ LS + +E +G+ L Y Sbjct: 87 SQPNPSRKYL----LALLTAMLPGAALGW-VWLKHPVLSDVTPVQAPMEALGQGLMEPYI 141 Query: 144 YPLEISGFILLLSMIGAIVLMLRHR 168 E+ +L ++M GA++L R R Sbjct: 142 LAFELISVVLFVAMSGAVILAFRKR 166 >gi|256593090|gb|ACV03500.1| NADH dehydrogenase subunit 6 [Keratoisis cf. flabellum SCF-2009] Length = 65 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 1/64 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MDSLFM-IFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVY 59 Query: 63 VGAV 66 VGA+ Sbjct: 60 VGAI 63 >gi|227535962|ref|ZP_03966011.1| possible NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|300771668|ref|ZP_07081543.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium spiritivorum ATCC 33861] gi|227244205|gb|EEI94220.1| possible NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|300761657|gb|EFK58478.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium spiritivorum ATCC 33861] Length = 167 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 101/176 (57%), Gaps = 25/176 (14%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +F++I + + + +NP++SV L+ F ++LL A+F+A++ +VY+GA++ Sbjct: 4 FYFVAFLSIFFALMTIFTKNPVHSVLYLVITFFTFTVHYILLNAQFLAVVNFIVYMGAIM 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V FLF++M+L+++ E +EP + S + ++ A +C ++ G L R++ Sbjct: 64 VLFLFVLMLLNLNKE-SEPMR------SGVVKVMGAVAGMC----LLVVVLGSL-RIIEI 111 Query: 128 GNN----------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 N V+ +G+VL+ ++ P EIS +LL +M+GA++L ++D K+ Sbjct: 112 DNGDVVAQPSIGLVKQLGEVLFDKFLLPFEISSILLLTAMVGAVLL---AKKDTKK 164 >gi|268053715|ref|YP_003289122.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis] gi|226235329|dbj|BAH47635.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis] gi|262318335|dbj|BAI48656.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis] Length = 311 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS F L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGFYLVLLFFLGSTISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|325280128|ref|YP_004252670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Odoribacter splanchnicus DSM 20712] gi|324311937|gb|ADY32490.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Odoribacter splanchnicus DSM 20712] Length = 169 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++F +L + + ++ S L VT + + S L+F AG++ L F+ + L VY Sbjct: 7 QAVFLFLAAVI-VVCSILTVTTKRILRSATYLLFVLFATAGIYFELNYSFLGAVQLTVYA 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 G +IV ++F I++ D + A+ K FF GILAA F+ + +S Sbjct: 66 GGIIVLYVFSILLTSSDNKKADKIKNS----KFFAGILAAVGGAALCIFITLTHSFPVSH 121 Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168 V N + IG L QY P E+ +LL +IG I L+ R R Sbjct: 122 FVPGEINQKVIGTALMGTEKYQYLLPFEVISVLLLACIIGGI-LIARKR 169 >gi|84508621|ref|YP_448668.1| NADH dehydrogenase subunit 6 [Desmarestia viridis] gi|45925653|gb|AAS79054.1| NADH dehydrogenase subunit 6 [Desmarestia viridis] Length = 311 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%) Query: 10 LFSFMAIISSFL---VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F F+AI+ L V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ Sbjct: 6 IFIFIAILGGSLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAI 65 Query: 67 IVFFLFIIMMLDID-IEVAEPRKKRGFL 93 V LF++MMLD+ IE KK+ L Sbjct: 66 AVLVLFVVMMLDVKAIENPWSAKKKRLL 93 >gi|183599628|ref|ZP_02961121.1| hypothetical protein PROSTU_03115 [Providencia stuartii ATCC 25827] gi|188021880|gb|EDU59920.1| hypothetical protein PROSTU_03115 [Providencia stuartii ATCC 25827] Length = 181 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 53/82 (64%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +A++++ V+T NP++++ L+ + + + +F LGA F + ++VY GA++ Sbjct: 5 FYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V F+F++MML++ V E ++ Sbjct: 65 VLFVFVVMMLNLGRSVQEQERE 86 >gi|320352996|ref|YP_004194335.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] gi|320121498|gb|ADW17044.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] Length = 184 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 14/170 (8%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + +I + + V R + +V L F AG++ L + F+AM+ +++YVG Sbjct: 22 GIIFLLTVALVVIGALIAVNARRLVRAVAGLAVCFTGLAGVYYFLLSPFLAMMQMLIYVG 81 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLG---SFFIGIL---AAELIVCASNFMVFSAE 118 AV + F IMM + + K R L +F + L A L+ + + VF + Sbjct: 82 AVSILIAFGIMMATPEEQQTPGMKHRSALAGPLAFSVAALIFAALTLLGLKTQWQVFPRQ 141 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G +++ +G L T + E+ +LLL++IGA+VL R R Sbjct: 142 GSF--------DIKAVGMSLLTTHGMVFELISIVLLLAIIGALVLAQRGR 183 >gi|268164103|ref|YP_003288880.1| NADH dehydrogenase subunit 6 [Saccharina coriacea] gi|226235426|dbj|BAH47628.1| NADH dehydrogenase subunit 6 [Saccharina coriacea] gi|262318413|dbj|BAI48732.1| NADH dehydrogenase subunit 6 [Saccharina coriacea] Length = 311 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRG--FLGSF 96 IE KK+ +LG+F Sbjct: 81 IESPWSAKKKRLLYLGAF 98 >gi|84508544|ref|YP_448709.1| NADH dehydrogenase subunit 6 [Dictyota dichotoma] gi|45925712|gb|AAS79093.1| NADH dehydrogenase subunit 6 [Dictyota dichotoma] Length = 273 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 10/94 (10%) Query: 8 FYLFSFMAIISSFL-----VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 F L+ F ++S FL VV NP+YS+ L+ FV + + L G +++++I ++VY Sbjct: 2 FELYLFATVMSLFLALGLNVVISHNPVYSILYLVLFFVTGSSILALFGFDYLSLIFVLVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF 96 VGA+ V FLF++M+LDI + K GF +F Sbjct: 62 VGAIAVLFLFVVMILDI-----KTINKSGFDATF 90 >gi|256593063|gb|ACV03486.1| NADH dehydrogenase subunit 6 [Isidella sp. I2a] gi|256593066|gb|ACV03488.1| NADH dehydrogenase subunit 6 [Isidella tentaculum] Length = 61 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 46/62 (74%), Gaps = 1/62 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLF +FS + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VY Sbjct: 1 MNSLFM-IFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVY 59 Query: 63 VG 64 VG Sbjct: 60 VG 61 >gi|183220693|ref|YP_001838689.1| NADH-quinone oxidoreductase subunit J [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910794|ref|YP_001962349.1| NADH dehydrogenase subunit J [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775470|gb|ABZ93771.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779115|gb|ABZ97413.1| NADH-quinone oxidoreductase, chain J [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 199 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 19/190 (10%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F F + ++++ VV +NP+ S SL+F F AG++ ++GA F+A + ++VY GA Sbjct: 10 LLFVFFGTVTVVTALSVVFQKNPVVSAVSLVFTFFALAGIYGIMGALFIATMQVLVYAGA 69 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGF---------LGSFFIGILAAELIVCASNFMVFS 116 ++V +F++M+L E +K LG FF+ A V S M Sbjct: 70 IMVLVVFVLMLLSQRAETLSRYRKHPIRLVLLSVFVLGFFFLLYSALTTGVPHSEQMGKG 129 Query: 117 AEGELSRLVFKGN-------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 E +G NV +G Y Y P E+ +LL++++GA++L ++ Sbjct: 130 YENAEYNFPIQGTSTVNAKGNVATVGASTYLDYLLPFEMISILLLVAVLGAVILA---KK 186 Query: 170 DIKRQDISKQ 179 + D +K Sbjct: 187 KLTEADQTKD 196 >gi|269218346|ref|ZP_06162200.1| NADH dehydrogenase [Actinomyces sp. oral taxon 848 str. F0332] gi|269212205|gb|EEZ78545.1| NADH dehydrogenase [Actinomyces sp. oral taxon 848 str. F0332] Length = 321 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LF + M ++ F ++ R +YS +I V A L+ L A F+ ++ + VY GA Sbjct: 16 LFGVVAVVMVTLTVFGLLVTRRAVYSAVCVIADMVCLAVLYTALEAPFMGVVQIAVYTGA 75 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +++ FLF++MM+ +D + RG + M G + + Sbjct: 76 ILMMFLFVLMMIGVDAADSTYETLRGQR-VMAALGALGFAAIAGGAVMDARTPGPVG--L 132 Query: 126 FKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 K N N I K ++T +A +E++G +L+++ +GA+ L HR+ ++++ Sbjct: 133 AKANEETNPTAIAKSIFTNHALTMELTGALLIVAAVGAMTLT--HRQGVRKR 182 >gi|58045466|gb|AAW65060.1| NADH dehydrogenase subunit 6 [Ecklonia radiata] Length = 311 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%) Query: 10 LFSFMAIISSFL---VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F F+A + L V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ Sbjct: 6 IFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAI 65 Query: 67 IVFFLFIIMMLDID-IEVAEPRKKRGFL 93 V LF++MMLD+ IE KK+ L Sbjct: 66 AVLVLFVVMMLDVKAIERPWSSKKKRLL 93 Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190 + ++ +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N++ Sbjct: 236 LNDLSYLLYSTHAILLLIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAVFS 292 Query: 191 VKVKSG 196 +K KS Sbjct: 293 IKEKSS 298 >gi|58045484|gb|AAW65069.1| NADH dehydrogenase subunit 6 [Saccharina sessilis] Length = 311 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|320160453|ref|YP_004173677.1| putative NADH-quinone oxidoreductase subunit J [Anaerolinea thermophila UNI-1] gi|319994306|dbj|BAJ63077.1| putative NADH-quinone oxidoreductase chain J [Anaerolinea thermophila UNI-1] Length = 172 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 13/173 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + + S+ +VV R I+S F LI A A F L A F A+I + VY+GA+ Sbjct: 8 FLLIALLTLFSASMVVFARKTIHSAFWLILALFGVAATFATLEASFFAVIQVAVYIGAIA 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR---L 124 + +F +M+ +E + G+ + + ++A I+ +++ +G L Sbjct: 68 ILIIFAVMLTRRSMEETGDQLLPGWGWAALVVLIAFGGII----YLLLQWQGVFQAPQVL 123 Query: 125 VFKGNNVENIG--KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G N+E +G V+ +Y P E++ +L+ +MIGAI + D+K++ Sbjct: 124 TAGGENLEALGIALVMPDRYVIPFEVASVLLVAAMIGAIYV----AGDLKKRS 172 >gi|292385453|gb|ADE22013.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISXLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ F F++GIL Sbjct: 81 IERPWSVKKKRF---FYLGIL 98 >gi|291296247|ref|YP_003507645.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus ruber DSM 1279] gi|290471206|gb|ADD28625.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus ruber DSM 1279] Length = 199 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 1/73 (1%) Query: 7 FFYLFSFMAIISSFL-VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 F+ + + + ++ + L VV ++N +++ +LI F+ AG+++ L A FVAMI ++VY GA Sbjct: 5 FWEVLALLVLVGTGLAVVRLQNAVHAALALIANFLVVAGVYVALEARFVAMIQIIVYAGA 64 Query: 66 VIVFFLFIIMMLD 78 ++V FLF+IM+L Sbjct: 65 IVVLFLFVIMLLS 77 >gi|82702150|ref|YP_411716.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosospira multiformis ATCC 25196] gi|82410215|gb|ABB74324.1| NADH dehydrogenase subunit J [Nitrosospira multiformis ATCC 25196] Length = 188 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 64/105 (60%), Gaps = 7/105 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A+ ++ +VVT + ++++ LI + + A +F +LGA F A + +++Y GAV+ Sbjct: 5 FYLSGAVAVAATLMVVTRASAVHALLYLIVSLLAVAIIFFVLGAPFAAALEVIIYAGAVM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG------ILAAELI 106 V F+F+IMML++ + A +++ ++G +L AELI Sbjct: 65 VLFVFVIMMLNLG-KAAAVKEREWLSPGMWVGPSILSALLLAELI 108 >gi|206942067|gb|ACI22630.1| NADH-plastoquinone oxidoreductase subunit 6 [Aneura pinguis] Length = 192 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 6/164 (3%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + N ++S F L F A L+L L ++F+A +++YVGA+ V +F +M Sbjct: 20 ILGSLGVVPLTNIVHSAFLLGFVSACTAPLYLSLDSDFIAAAQVLIYVGAINVLLIFAVM 79 Query: 76 MLDIDIEVAEPRKKRG----FLGSFFIGILAAELIVCASNFMVFS-AEGELSRLVFKGNN 130 ++ E K G + I +L+ I S V+ A + +N Sbjct: 80 LIKKGTEDYSAYKTVGDGITLVPCIGIFLLSDNTISNTSWSEVYLIARSNDDEGIVPMDN 139 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + IG L T++ P E+ ILL++++GAI L R R+ I + Sbjct: 140 IRRIGLELVTEFFIPFELMSLILLIALVGAITLA-RARKTINSE 182 >gi|15147287|ref|NP_150360.1| NADH dehydrogenase subunit 6 [Rhizophydium sp. 136] gi|15100129|gb|AAK84290.1|AF404306_32 NADH dehydrogenase subunit 6 [Rhizophydium sp. 136] Length = 269 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 1/77 (1%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + I+SSFL++T NP+ + LI F+ +A ++LLL F+ + ++VYVGA+ + FLF+ Sbjct: 13 IGILSSFLILTSLNPVTRLVLLIIVFIMSAFIYLLLDFYFLGLTYIIVYVGAIAILFLFV 72 Query: 74 IMMLDIDIEVAEPRKKR 90 IMM ++ E +P + Sbjct: 73 IMMSEVK-ETPQPNPHQ 88 >gi|156494382|ref|YP_001427408.1| NADH dehydrogenase subunit 6 [Phaeosphaeria nodorum SN15] gi|156106289|gb|ABU49452.1| NADH dehydrogenase subunit 6 [Phaeosphaeria nodorum SN15] Length = 198 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 16/179 (8%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L +AI+ LV+ +NPI SV LI F+ + +L G F+ + L+VY+GAV + Sbjct: 20 LLYLIAILLGILVIISKNPIVSVLFLIGLFLCISVYLILTGLNFIGLSYLLVYIGAVSIL 79 Query: 70 FLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAEL--IVCASNFMV-FSAEGEL 121 FLFI+M++++ I+ +GSFF + L +V +N + FS + L Sbjct: 80 FLFILMLINVRISELLIDSINSIPLAILVGSFFNYFVNNVLPYMVMTNNLLYHFSIKKNL 139 Query: 122 SRLV---FKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + + G +++ +IG +LY Y+ L I+ ILLL+M+GAIV+ L+ + +K Sbjct: 140 TNVTSVSWDGYLAETSHITSIGNILYGHYSIWLIITSIILLLAMVGAIVITLKPQTHVK 198 >gi|238920559|ref|YP_002934074.1| NADH-quinone oxidoreductase subunit j [Edwardsiella ictaluri 93-146] gi|238870128|gb|ACR69839.1| NADH-quinone oxidoreductase subunit j [Edwardsiella ictaluri 93-146] Length = 190 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 9/176 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + +A++++ V+T NP++++ LI + + A +F LGA F + ++VY GA++ Sbjct: 5 FYAAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 V F+F++MML++ V E ++R +L +IG LI+ A +V A L Sbjct: 65 VLFVFVVMMLNLGHSVVE--QERAWLRPGVWIGPALLSLILLA---VVLYAISTLQGGFT 119 Query: 127 KGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQ 179 G V+ +G L+ Y +E+ +LL ++ A + H D+ + Q Sbjct: 120 DGRAVDAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHHPGDVLSNKTASQ 175 >gi|27464577|gb|AAO16144.1| NADH dehydrogenase subunit 6 [Cladiella sp. CSM-2002] Length = 147 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKIASQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I S+ + S + + ++ N+ IG LYT Y + I+ +LL +MIGAI Sbjct: 54 GLSIIFLFSSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLIASLVLLAAMIGAI 113 Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185 +L + + L S D Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQD 137 >gi|289065142|ref|YP_003434028.1| NADH-plastoquinone oxidoreductase subunit 6 [Typha latifolia] gi|281371825|gb|ADA63752.1| NADH-plastoquinone oxidoreductase subunit 6 [Typha latifolia] Length = 176 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L A FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 K +L + IG LI C + ++FS + + G N Sbjct: 85 EYSKDSYL--WTIGDGGTSLI-CTT--ILFSLITTIPDTSWYGIIWTTKSNQIIEQDLIN 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 NV+ IG L T + P E+ ILL+S+IGAI + Sbjct: 140 NVQQIGIHLSTDFYLPFELVSIILLVSLIGAITM 173 >gi|11466850|ref|NP_039447.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|50234041|ref|YP_052818.1| NADH dehydrogenase subunit 6 [Oryza nivara] gi|109156636|ref|YP_654255.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group] gi|68565730|sp|Q6ENA4|NU6C_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|148880121|sp|P0C329|NU6C_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|148880122|sp|P0C330|NU6C_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|148880123|sp|P0C331|NU6C_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|12053|emb|CAA33908.1| NADH dehydrogenase ND6 [Oryza sativa Japonica Group] gi|42795528|gb|AAS46095.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group] gi|42795594|gb|AAS46160.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|42795658|gb|AAS46223.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|46805098|dbj|BAD17337.1| rice chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica Group] gi|46805101|dbj|BAD17340.1| rice chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica Group] gi|49615065|dbj|BAD26848.1| NADH dehydrogenase subunit 6 [Oryza nivara] gi|290790615|gb|ADD62875.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza sativa Japonica Group] gi|290790684|gb|ADD62943.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza meridionalis] gi|290790753|gb|ADD63011.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza australiensis] gi|226674|prf||1603356DB NADH dehydrogenase ND6 Length = 176 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 20/151 (13%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NP +S FSL V + ++LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPTFSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-----------RLVFKG--NNVE 132 K + F + IG L+ F + + + S ++V +G NNV+ Sbjct: 86 WSKDKNF---WTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 IG L T + P E+ ILL+S+IGAI + Sbjct: 143 QIGIHLATDFYLPFELISIILLVSLIGAITM 173 >gi|58045438|gb|AAW65046.1| NADH dehydrogenase subunit 6 [Agarum clathratum] Length = 311 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 5/87 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRG--FLGS--FFIGILAA 103 IE KK+ +LG+ FF ++AA Sbjct: 81 IESPWSAKKKRLLYLGALIFFFFLIAA 107 >gi|57923584|gb|AAW59538.1| NADH dehydrogenase subunit 6 [Pelagophycus porra] gi|58045460|gb|AAW65057.1| NADH dehydrogenase subunit 6 [Pelagophycus porra] Length = 311 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRG--FLGS 95 IE KK+ +LGS Sbjct: 81 IESPWSAKKKRLLYLGS 97 >gi|11466441|ref|NP_038447.1| NADH dehydrogenase subunit 6 [Mesostigma viride] gi|14194990|sp|Q9MUL3|NU6C_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|7259584|gb|AAF43885.1|AF166114_97 subunit 6 of NADH-plastoquinoneoxidoreductase [Mesostigma viride] Length = 189 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 11/179 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q+L L II + VV + N +YS F L + AG++LLL AEF+A +++Y Sbjct: 7 IQNLSLLLLEIGTIIGALGVVLLPNILYSGFLLGGVLICIAGIYLLLNAEFIAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK---RGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VGA+ V LF IM+++ IE P R L SF + + SN M+F + Sbjct: 67 VGAINVIILFAIMLVN-KIENLNPSNNQMMRNGLSSF----ICFSFFILLSN-MIFDTQW 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + V ++ IG +++ + P EI +LL++++GA+ + + D +ISK Sbjct: 121 IDTVGVSTKYSISIIGNHIFSDFLLPFEIVSVLLLVTLVGAV--FIARKEDASEIEISK 177 >gi|298530614|ref|ZP_07018016.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfonatronospira thiodismutans ASO3-1] gi|298509988|gb|EFI33892.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfonatronospira thiodismutans ASO3-1] Length = 174 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 13/167 (7%) Query: 10 LFSFMAII--SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 LF +AII F+ V ++ + ++ LI AGLF L+ A F+A++ +++YVGAV Sbjct: 14 LFGHIAIIVVGGFMTVLSQSLVRALVGLIMTLFGVAGLFFLMAAPFIALMQILIYVGAVS 73 Query: 68 VFFLFIIMMLDI----DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 V F IM+ + D P +K + G G++ A ++ A+ + SA S Sbjct: 74 VLIFFAIMLTNAWPGGDETGRSPGRKYVYAG--LAGLVPAVMLATAA---IRSAPP--SF 126 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 LV + + +G+ + P E+ +L ++M GA++L RR Sbjct: 127 LVPEETEISVLGRFFLEDFILPFELISLLLTIAMAGAVILAFEMRRK 173 >gi|327325777|gb|EGE67569.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL103PA1] Length = 284 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + ++++ ++V + P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + +G + I LA LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNTVTTDV 133 Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRR 169 G + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 134 IGTDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKK 193 Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196 +R+ ++ ++ + ++ S V+ SG Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221 >gi|158317827|ref|YP_001510335.1| NADH dehydrogenase subunit J [Frankia sp. EAN1pec] gi|158113232|gb|ABW15429.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp. EAN1pec] Length = 323 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 13/163 (7%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 V +R+ ++S L+ A +L+ A F+ + ++VY GA++V FLF++M++ +D Sbjct: 38 VLMRSAVHSALLLVVNLFCVAVFYLIQDAPFLGFVQIIVYTGAIMVLFLFVLMLVGVDSS 97 Query: 83 VAEPRKKRG------FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 + RG LG F G+LA + E G NV IG+ Sbjct: 98 DSLVETLRGQRIAAVILGLGFAGLLAFPIGRAIDGGKAAGLE-----AANTGGNVHAIGR 152 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 +L+TQY + E +L+++ IG +V L HR + K+ Sbjct: 153 LLFTQYVFVFEAISVLLVVAAIGTMV--LGHREHTGEKVTQKE 193 >gi|58045476|gb|AAW65065.1| NADH dehydrogenase subunit 6 [Laminaria ephemera] Length = 309 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ F++G L Sbjct: 81 IESPWSAKKKRL---FYLGAL 98 >gi|317051062|ref|YP_004112178.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Desulfurispirillum indicum S5] gi|316946146|gb|ADU65622.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfurispirillum indicum S5] Length = 168 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ +L F F+ ++I + ++ R+P+ S I ++ AGL+ LL A+ + ++V Sbjct: 3 IVAALLFLAFATLSIAGAAGLILFRHPLNCAVSFIITLISLAGLYALLSAKVLFAFQIIV 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL---GSFFIGILAAELIVCASNFMVFSAE 118 Y GA++ LFIIM +++ E R FL G F+ +A L+ +F+ Sbjct: 63 YAGAIMSLILFIIMFINVRDEDLPDESNRIFLMAGGCVFLVPIAWILLKA-----IFALP 117 Query: 119 GELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +V G + G +L+T + P E+ +LL++++G +VL R Sbjct: 118 YVSTAIVGDGFGGIHQFGMMLFTDWILPFEVVSALLLVALVGGVVLAKRR 167 >gi|302523886|ref|ZP_07276228.1| NADH dehydrogenase subunit J [Streptomyces sp. AA4] gi|302432781|gb|EFL04597.1| NADH dehydrogenase subunit J [Streptomyces sp. AA4] Length = 275 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 89/173 (51%), Gaps = 13/173 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ ++++ + ++ RN ++S L+ + L++ A F+ ++VY Sbjct: 5 EAIAFWILGPLSLLGALGMIFSRNAVHSALWLVLTMLTLGALYMTQSAPFLGFTQIIVYT 64 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKR---GFLGSFFIGILAAELIVCASNFMVF 115 GA+++ FLF++M++ D +EV R +R G LG ++AA + +N Sbjct: 65 GAIMMLFLFVLMLVGRDSSDSVVEVL--RGQRLAAGVLGIGLAALIAAGVFRAMAN---V 119 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + L G +G++++TQY +P E++ +L+ + +GA+VL R Sbjct: 120 TPAKPLDPYQQTGGGPGGLGRLIFTQYLFPFELTSALLITAALGAMVLAFTGR 172 >gi|327179837|ref|YP_004327734.1| NADH dehydrogenase subunit 6 [Placozoan sp. 'Shirahama'] gi|298561256|dbj|BAJ09639.1| NADH dehydrogenase subunit 6 [Placozoan sp. 'Shirahama'] Length = 278 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 SVF LI F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ + + K Sbjct: 50 SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGDQKEKETKGY 109 Query: 91 GFL 93 F+ Sbjct: 110 SFI 112 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 25/36 (69%) Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G N+E IG VLY Y Y + FILL++MIGAIVL Sbjct: 237 GTNLEAIGSVLYINYYYAFILVSFILLVAMIGAIVL 272 >gi|295697739|ref|YP_003590977.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus tusciae DSM 2912] gi|295413341|gb|ADG07833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus tusciae DSM 2912] Length = 179 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 R +Y S+ F+ AG+++LLGA+F+A +++Y GA+ + LF IM+ D EV E Sbjct: 38 RKVMYMALSIGLVFLGMAGMYVLLGADFLAFAQILIYAGAITILMLFAIMLTRHD-EVEE 96 Query: 86 PRKK--RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143 + R +L L A ++ +A N+V + ++L+T Y Sbjct: 97 EERAGLRQWLAGLGAVALGAAMLWAIRTTTWPAA--PAQPPWPAQNSVTALAEMLFTNYV 154 Query: 144 YPLEISGFILLLSMIGAIVL 163 P E+ +L ++++GA++L Sbjct: 155 VPFELVSVLLTVALVGAVIL 174 >gi|302423955|ref|XP_003009807.1| NADH dehydrogenase subunit 6 [Verticillium albo-atrum VaMs.102] gi|261361697|gb|EEY24125.1| NADH dehydrogenase subunit 6 [Verticillium albo-atrum VaMs.102] Length = 222 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 38/197 (19%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S I+ L++ +NPI SV LI F A +LLG F+ L+VY+GAV + FL Sbjct: 24 SLFIILCGVLIIISKNPIVSVLFLIGLFGGVASYLILLGLNFIGFSYLIVYIGAVSILFL 83 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGI---------LAAEL----------------- 105 FI+M+++I I + K + FI I L +L Sbjct: 84 FILMLINIRISELQSNTKNSIPLALFITIFFNYSLFQVLPYDLAILNNNNNYINNILYYI 143 Query: 106 ------------IVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 ++ +N + F+ + + +++ +IG +LYT L + IL Sbjct: 144 SLNKQETINDSKLLNTNNDLYFATSNSWDGNLIETSHISSIGNILYTTNNMWLILVSLIL 203 Query: 154 LLSMIGAIVLMLRHRRD 170 LL+M+GAI++ ++ R+ Sbjct: 204 LLAMVGAIIITIKSNRN 220 >gi|58045444|gb|AAW65049.1| NADH dehydrogenase subunit 6 [Alaria fistulosa] Length = 311 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRG--FLGS 95 IE KK+ +LGS Sbjct: 81 IESPWSAKKKRLLYLGS 97 >gi|57923588|gb|AAW59541.1| NADH dehydrogenase subunit 6 [Postelsia palmaeformis] gi|58045454|gb|AAW65054.1| NADH dehydrogenase subunit 6 [Postelsia palmaeformis] Length = 311 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ L + GIL Sbjct: 81 IESPWSAKKKRLL---YFGIL 98 >gi|307822809|ref|ZP_07653040.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacter tundripaludum SV96] gi|307736413|gb|EFO07259.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacter tundripaludum SV96] Length = 172 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 86/157 (54%), Gaps = 9/157 (5%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY+ S +A+ ++ +++T N ++ + LI + + LF LLGA F A++ +++Y GA+ Sbjct: 5 LFYITSAVAVFATVMMITRLNAVHGLLYLILSLLAVGVLFFLLGAYFAAVLEVIIYAGAI 64 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIG--ILAAELIVCASNFMVFSAEGELSR 123 +V F+F+IMML+ + E ++R +L +IG +LA L V +V E Sbjct: 65 MVLFVFVIMMLNQGQKTLE--QERAWLQPGIWIGPSLLALILFVEMLVIVVSGGSAETGY 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 V + + +G LY Y +E++ +LL ++GA Sbjct: 123 AV----SAKQVGVALYGPYLLAVELASMLLLAGLVGA 155 >gi|58045474|gb|AAW65064.1| NADH dehydrogenase subunit 6 [Laminaria solidungula] Length = 311 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRG--FLGS 95 IE KK+ +LGS Sbjct: 81 IESPWSAKKKRLLYLGS 97 >gi|282855265|ref|ZP_06264597.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes J139] gi|282581853|gb|EFB87238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes J139] gi|314983069|gb|EFT27161.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL110PA3] gi|315090602|gb|EFT62578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL110PA4] gi|315093911|gb|EFT65887.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL060PA1] gi|315104130|gb|EFT76106.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL050PA2] Length = 284 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + ++++ ++V + P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + +G + I LA LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTDV 133 Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRR 169 G + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 134 IGTDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKK 193 Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196 +R+ ++ ++ + ++ S V+ SG Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221 >gi|57923564|gb|AAW59523.1| NADH dehydrogenase subunit 6 [Undaria pinnatifida] gi|58045452|gb|AAW65053.1| NADH dehydrogenase subunit 6 [Undaria pinnatifida] Length = 311 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|292385544|gb|ADE22081.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKHFL---YLGIL 98 >gi|57923560|gb|AAW59520.1| NADH dehydrogenase subunit 6 [Pterygophora californica] gi|58045448|gb|AAW65051.1| NADH dehydrogenase subunit 6 [Pterygophora californica] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|58045464|gb|AAW65059.1| NADH dehydrogenase subunit 6 [Eisenia arborea] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V++ +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VISTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IERPWSAKKKRLL 93 >gi|91176238|ref|YP_537111.1| NADH dehydrogenase subunit 6 [Paracoccidioides brasiliensis] gi|63081167|gb|AAY30330.1| NADH dehydrogenase subunit 6 [Paracoccidioides brasiliensis] Length = 185 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 15/155 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 +NP+ S+F LI F + + L+G EF+ + L+VY+GAV + FLFI+M+ I++ ++E Sbjct: 35 KNPVISIFFLIGLFSSISCYLFLIGLEFIGLSYLLVYIGAVSILFLFILML--INLRISE 92 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNF-----------MVFSAEGELSRLVFKGNNVENI 134 K S + I + L + NF +++ ++ + +I Sbjct: 93 LTTKTT--NSLPLAIFSFILFIFILNFNLPINTRDNPEIIYVISLNWDNILINNTQINSI 150 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 G +LYT Y+ L I ILLL+M+G+IV+ L + Sbjct: 151 GNILYTNYSLWLIILSVILLLAMVGSIVITLNKNK 185 >gi|314923985|gb|EFS87816.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL001PA1] Length = 284 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + ++++ ++V + P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + +G + I LA LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTDV 133 Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRR 169 G + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 134 IGTDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKK 193 Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196 +R+ ++ ++ + ++ S V+ SG Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221 >gi|27464574|gb|AAO16142.1| NADH dehydrogenase subunit 6 [Klyxum simplex] Length = 147 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKIDSQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I S+ + S + + ++ N+ IG LYT Y + I+ +LL +MIGAI Sbjct: 54 GLSVIFLFSSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLAAMIGAI 113 Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185 +L + + L S D Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQD 137 >gi|57923552|gb|AAW59514.1| NADH dehydrogenase subunit 6 [Lessoniopsis littoralis] gi|58045446|gb|AAW65050.1| NADH dehydrogenase subunit 6 [Lessoniopsis littoralis] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|254032050|ref|YP_001023812.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ49] Length = 254 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 SVF LI F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ + + K Sbjct: 26 SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGDQKDKETKGY 85 Query: 91 GFL 93 F+ Sbjct: 86 SFI 88 Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 25/36 (69%) Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G N+E IG VLY Y Y + FILL++MIGAIVL Sbjct: 213 GTNLEAIGSVLYINYYYAFILVSFILLVAMIGAIVL 248 >gi|114177223|gb|ABI53775.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ49] Length = 278 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 SVF LI F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ + + K Sbjct: 50 SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGDQKDKETKGY 109 Query: 91 GFL 93 F+ Sbjct: 110 SFI 112 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 25/36 (69%) Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G N+E IG VLY Y Y + FILL++MIGAIVL Sbjct: 237 GTNLEAIGSVLYINYYYAFILVSFILLVAMIGAIVL 272 >gi|292385595|gb|ADE22119.1| NADH dehydrogenase subunit 6 [Lessonia variegata] gi|292385599|gb|ADE22122.1| NADH dehydrogenase subunit 6 [Lessonia variegata] gi|292385603|gb|ADE22125.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|172072939|ref|YP_001806700.1| NADH dehydrogenase subunit 6 [Cryptomeria japonica] gi|221272319|sp|B1VKI7|NU6C_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|171854958|dbj|BAG16698.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica] gi|239794326|dbj|BAH73323.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica] gi|239794409|dbj|BAH73405.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica] Length = 180 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 6/153 (3%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 VV + N IYS SL + + +++L A+FVA+ +++Y+GAV + LF +M+++ Sbjct: 26 VVLLTNIIYSALSLGLVLICISFFYIILNADFVAVAQILIYIGAVNILILFAVMLMNNPK 85 Query: 81 -IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SAEGELSRLVFKG--NNVENIG 135 A P + S L LI N F S + +++ + NN++ IG Sbjct: 86 YPNYAPPWTVGDSISSIVCTSLFCSLITIILNISWFGISLTQKSDQMLERDLTNNIQRIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 L T + P E+ ILL+++IGAI + R Sbjct: 146 AHLSTDFFLPFELISIILLVALIGAITIARREE 178 >gi|57923532|gb|AAW59499.1| NADH dehydrogenase subunit 6 [Alaria marginata] gi|57923536|gb|AAW59502.1| NADH dehydrogenase subunit 6 [Alaria nana] gi|57923540|gb|AAW59505.1| NADH dehydrogenase subunit 6 [Alaria taeniata] gi|57923572|gb|AAW59529.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia] gi|58045442|gb|AAW65048.1| NADH dehydrogenase subunit 6 [Alaria marginata] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|313793599|gb|EFS41639.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL110PA1] gi|327452510|gb|EGE99164.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL092PA1] Length = 284 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + ++++ ++V + P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + +G + I LA LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGV 133 Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169 G + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 134 IGTDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193 Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196 +R+ ++ ++ + ++ S V+ SG Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221 >gi|289425611|ref|ZP_06427383.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes SK187] gi|289427016|ref|ZP_06428735.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes J165] gi|289153912|gb|EFD02605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes SK187] gi|289159838|gb|EFD08023.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes J165] gi|313763293|gb|EFS34657.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL013PA1] gi|313802890|gb|EFS44103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL110PA2] gi|313806336|gb|EFS44852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL087PA2] gi|313813683|gb|EFS51397.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL025PA1] gi|313814967|gb|EFS52681.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL059PA1] gi|313819447|gb|EFS57161.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL046PA2] gi|313821253|gb|EFS58967.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL036PA1] gi|313822292|gb|EFS60006.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL036PA2] gi|313826150|gb|EFS63864.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL063PA1] gi|313829361|gb|EFS67075.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL063PA2] gi|313838158|gb|EFS75872.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL086PA1] gi|314916747|gb|EFS80578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL005PA4] gi|314919127|gb|EFS82958.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL050PA1] gi|314921207|gb|EFS85038.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL050PA3] gi|314925999|gb|EFS89830.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL036PA3] gi|314930365|gb|EFS94196.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL067PA1] gi|314956148|gb|EFT00544.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL027PA1] gi|314959681|gb|EFT03783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL002PA1] gi|314962255|gb|EFT06356.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL002PA2] gi|314963231|gb|EFT07331.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL082PA1] gi|314969774|gb|EFT13872.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL037PA1] gi|314979340|gb|EFT23434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL072PA2] gi|314986328|gb|EFT30420.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL005PA2] gi|314988575|gb|EFT32666.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL005PA3] gi|315079692|gb|EFT51680.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL053PA2] gi|315083917|gb|EFT55893.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL027PA2] gi|315085054|gb|EFT57030.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL002PA3] gi|315089483|gb|EFT61459.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL072PA1] gi|315098095|gb|EFT70071.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL059PA2] gi|315102687|gb|EFT74663.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL046PA1] gi|315108829|gb|EFT80805.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL030PA2] gi|327325718|gb|EGE67515.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL096PA3] gi|327447749|gb|EGE94403.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL013PA2] gi|327451640|gb|EGE98294.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL087PA3] gi|327452293|gb|EGE98947.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL083PA2] gi|328752126|gb|EGF65742.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL025PA2] gi|328755070|gb|EGF68686.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL020PA1] gi|328757018|gb|EGF70634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL087PA1] Length = 284 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + ++++ ++V + P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + +G + I LA LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGV 133 Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169 G + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 134 IGTDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193 Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196 +R+ ++ ++ + ++ S V+ SG Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221 >gi|110578641|ref|YP_667830.1| NADH dehydrogenase subunit 6 [Verticillium dahliae] gi|84682168|gb|ABC60427.1| NADH dehydrogenase subunit 6 [Verticillium dahliae] Length = 222 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 38/197 (19%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S I+ L++ +NPI SV LI F A +LLG F+ L+VY+GAV + FL Sbjct: 24 SLFIILCGVLIIISKNPIVSVLFLIGLFGGVASYLILLGLNFIGFSYLIVYIGAVSILFL 83 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGI---------LAAEL----------------- 105 FI+M+++I I + K + FI I L +L Sbjct: 84 FILMLINIRISELQSNTKNSIPLALFITIFFNYSLFQVLPYDLAILNNNNNYINNILYYI 143 Query: 106 ------------IVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 ++ N + F+ + + +++ +IG +LYT L + IL Sbjct: 144 SLNKQETINDSKLLNTDNDLYFATSNSWDGNLIETSHISSIGNILYTTNNMWLILVSLIL 203 Query: 154 LLSMIGAIVLMLRHRRD 170 LL+M+GAI++ ++ R+ Sbjct: 204 LLAMVGAIIITIKSNRN 220 >gi|58045440|gb|AAW65047.1| NADH dehydrogenase subunit 6 [Dictyoneurum californicum] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ L ++G L Sbjct: 81 IESPWSAKKKRLL---YLGTL 98 >gi|292385615|gb|ADE22134.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|295131451|ref|YP_003582114.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes SK137] gi|291376680|gb|ADE00535.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes SK137] gi|313773339|gb|EFS39305.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL074PA1] gi|313810758|gb|EFS48472.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL083PA1] gi|313831069|gb|EFS68783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL007PA1] gi|313833199|gb|EFS70913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL056PA1] gi|314973947|gb|EFT18043.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL053PA1] gi|314976875|gb|EFT20970.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL045PA1] gi|314984997|gb|EFT29089.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL005PA1] gi|315081020|gb|EFT52996.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL078PA1] gi|315097698|gb|EFT69674.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL038PA1] gi|327330834|gb|EGE72579.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL096PA2] gi|327442873|gb|EGE89527.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL043PA2] gi|327445265|gb|EGE91919.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL043PA1] gi|328761554|gb|EGF75072.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL099PA1] Length = 284 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + ++++ ++V + P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + +G + I LA LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGV 133 Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169 G + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 134 IGTDHPVGLGQASTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193 Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196 +R+ ++ ++ + ++ S V+ SG Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221 >gi|58045472|gb|AAW65063.1| NADH dehydrogenase subunit 6 [Laminaria yezoensis] gi|226235344|dbj|BAH47621.1| NADH dehydrogenase subunit 6 [Laminaria yezoensis] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|57923556|gb|AAW59517.1| NADH dehydrogenase subunit 6 [Pleurophycus gardneri] gi|58045450|gb|AAW65052.1| NADH dehydrogenase subunit 6 [Pleurophycus gardneri] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|57923548|gb|AAW59511.1| NADH dehydrogenase subunit 6 [Alaria sp. LL02FI] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|327333131|gb|EGE74858.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL097PA1] Length = 284 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + ++++ ++V + P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + +G + I LA LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGV 133 Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169 G + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 134 IGTDHPVGLGQANAAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193 Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196 +R+ ++ ++ + ++ S V+ SG Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221 >gi|292385611|gb|ADE22131.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ FL ++GIL Sbjct: 81 IERPWSVKKKRFL---YLGIL 98 >gi|58045478|gb|AAW65066.1| NADH dehydrogenase subunit 6 [Saccharina gyrata] Length = 311 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|58045436|gb|AAW65045.1| NADH dehydrogenase subunit 6 [Costaria costata] Length = 311 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|58045470|gb|AAW65062.1| NADH dehydrogenase subunit 6 [Laminaria digitata] Length = 311 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N+I +K KS Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAIFSIKEKS 297 >gi|58045480|gb|AAW65067.1| NADH dehydrogenase subunit 6 [Saccharina latissima] gi|226235350|dbj|BAH47623.1| NADH dehydrogenase subunit 6 [Laminaria sachalinensis] Length = 311 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|83589832|ref|YP_429841.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Moorella thermoacetica ATCC 39073] gi|83572746|gb|ABC19298.1| NADH dehydrogenase subunit J [Moorella thermoacetica ATCC 39073] Length = 168 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 18/168 (10%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + +L F++ + + I ++ VV ++N ++S L+ F AGL++LL AEF+A + L+VY Sbjct: 4 ISALLFWVLAAITIAAALAVVLLKNIVHSALYLVLTFAGVAGLYILLQAEFLAAVQLLVY 63 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAEG 119 GAV + +F +M+ +RG + + F I LAA ++ A ++ G Sbjct: 64 AGAVAILIVFAVML-----------TRRGDIKASNLFNINYLAAGVVSLALFVVIVLGTG 112 Query: 120 ELSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVL 163 ++ N + ++A P E++ +LL++M+GAI+L Sbjct: 113 RMTWTTAPAQAPANNVAAIANAFLGRFAIPFEVAAVLLLVAMVGAILL 160 >gi|57923528|gb|AAW59496.1| NADH dehydrogenase subunit 6 [Alaria esculenta] Length = 311 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|268164064|ref|YP_003288829.1| NADH dehydrogenase subunit 6 [Saccharina angustata] gi|58045482|gb|AAW65068.1| NADH dehydrogenase subunit 6 [Saccharina angustata] gi|226235356|dbj|BAH47625.1| NADH dehydrogenase subunit 6 [Saccharina angustata] gi|262318374|dbj|BAI48694.1| NADH dehydrogenase subunit 6 [Saccharina angustata] Length = 311 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|21450018|ref|NP_659280.1| NADH dehydrogenase subunit 6 [Laminaria digitata] gi|21425343|emb|CAC87976.1| NADH dehydrogenase subunit 6 [Laminaria digitata] Length = 311 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N+I +K KS Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAIFSIKEKS 297 >gi|289474488|gb|ADC97863.1| NADH dehydrogenase subunit 6 [Sibogagorgia dennisgordoni] Length = 153 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 15/155 (9%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVL--------MLRHRRDIKRQDISKQLE 181 ++M+GAI+L + H RQD+ Q+ Sbjct: 115 VAMVGAILLAKQPNTPSLYSHVEIRSRQDLFLQIS 149 >gi|317121162|ref|YP_004101165.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermaerobacter marianensis DSM 12885] gi|315591142|gb|ADU50438.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermaerobacter marianensis DSM 12885] Length = 222 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F + + + ++ ++ VVT +S L FV AGLF+LL A A++ ++ Sbjct: 1 MTGAAVIFAILAAVVLLGAWRVVTSEQIAHSALFLGLTFVGMAGLFVLLQAPTFALLHVL 60 Query: 61 VYVGAVIVFFLFIIMMLDI-------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 VYVGA++ +F IM+ D D+ E R +R L ++ I V + + Sbjct: 61 VYVGAILTVVVFAIMLSDPEELRGAGDLPPGE-RLRRRLLSPYYGWIPVVVAGVLVAVVL 119 Query: 114 VFSAEGELSRLVFK---GNNVENIGKVLYTQYAYPLEI 148 A +L R+ +++ IG+ ++T+YA P E+ Sbjct: 120 ASLAAAQLPRVPLGEPVADDLRAIGRDMFTRYALPFEV 157 >gi|302870007|ref|YP_003838644.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Micromonospora aurantiaca ATCC 27029] gi|302572866|gb|ADL49068.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora aurantiaca ATCC 27029] Length = 182 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 18/192 (9%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +A+ + LVV R+ + + L+ AG +L+L AE VA + ++ Sbjct: 1 MTGADVLLLALGAVAVGAGALVVATRHLVRAGLWLVVCLGALAGDYLVLTAELVAWVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFS 116 +YVGAV+V LF +M+ I ++ + G+ AA L+ S ++ Sbjct: 61 IYVGAVVVLLLFAVMLTRAPIGPSDDLDRPGW---------AAALVGAGSGLGLAVLLID 111 Query: 117 AEGELSRLVFK-GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 A SR+ E +G+ L+ + P E+ +LL +++GAIVL R DI R+ Sbjct: 112 AF-RWSRVDLPVAGTAERLGEQLFRSWVLPFEVLSVLLLAALVGAIVL---SRPDIGRRS 167 Query: 176 ISKQLESNPDNS 187 D Sbjct: 168 TDTSASQPADEG 179 >gi|255533954|ref|YP_003094326.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter heparinus DSM 2366] gi|255346938|gb|ACU06264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter heparinus DSM 2366] Length = 165 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 102/170 (60%), Gaps = 10/170 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY + +++I S LV+ +NP++SV LI F ++LL A+F+A++ +VY Sbjct: 1 MGTSVFYFVAALSVIFSLLVIFSKNPVHSVLYLIVTFFTFTVHYVLLNAQFLAVVNFIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGEL 121 +GA++V FLF++M+L+++ + EP K G + +G++A L+V + + +A + Sbjct: 61 MGAIMVLFLFVLMLLNLNKD-NEPL-KSGLVK--VVGVIAGCCLLVTLAGALKATALSD- 115 Query: 122 SRLVFKGNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 +V + N V+++GK L+ + P E+ +LL +M+GAI+L + + Sbjct: 116 -PVVLRNPNLGLVKSLGKELFGPFMLPFELCSILLLSAMVGAILLTKKEK 164 >gi|57923544|gb|AAW59508.1| NADH dehydrogenase subunit 6 [Alaria sp. LL01AP] gi|57923568|gb|AAW59526.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia] gi|58045458|gb|AAW65056.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia] Length = 311 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|332676320|gb|AEE73136.1| NADH-quinone oxidoreductase subunit J [Propionibacterium acnes 266] Length = 284 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 106/208 (50%), Gaps = 12/208 (5%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + ++++ ++V + P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + +G + I LA LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILVVGNAVTTGV 133 Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169 G + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 134 IGTDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193 Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196 +R+ ++ ++ + ++ S V+ SG Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221 >gi|54024628|ref|YP_118870.1| NADH dehydrogenase subunit J [Nocardia farcinica IFM 10152] gi|54016136|dbj|BAD57506.1| putative NADH dehydrogenase I chain J [Nocardia farcinica IFM 10152] Length = 274 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 95/185 (51%), Gaps = 16/185 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +A++ + +V ++S L + A +++ A F+ ++ +VVY Sbjct: 17 EAVQFWILAPLAVLGALGMVFAAKAVHSAICLAATMIALAVMYIAQDALFLGVVQIVVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGI------LAAELIVCASNFMVFS 116 GAV++ FLF++M++ +D + RG + + +GI +A I + + F Sbjct: 77 GAVMMLFLFVLMLVGVDSAESLRETLRGQRIAATVVGIGFGLLLMAGIGIGIRESGVTFP 136 Query: 117 AEGELSRLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 A G F G +V + ++++ +Y + E++G +L+ + IGA+VL HR + Sbjct: 137 ATG------FPGRDVIAELAELIFLRYVWAFELTGALLITATIGAMVLA--HRDHFGART 188 Query: 176 ISKQL 180 ++L Sbjct: 189 TQREL 193 >gi|117927485|ref|YP_872036.1| NADH dehydrogenase subunit J [Acidothermus cellulolyticus 11B] gi|117647948|gb|ABK52050.1| NADH dehydrogenase subunit J [Acidothermus cellulolyticus 11B] Length = 275 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 24/187 (12%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVF-----SLIFAFVNAAGLFLLLGAEFVAMIT 58 ++ F++ +A++++ VV R+ +++ LIFA AA A +A + Sbjct: 15 EAALFWVLGPIAVLAALGVVFARHTVHAALLLGGVMLIFAIFYAA-----QDAPLIAFVQ 69 Query: 59 LVVYVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++VY GAV++ FLF++M++ +D + V R +R L + F GI L++ Sbjct: 70 IIVYTGAVMMLFLFVLMLIGVDTKERLVETLRGQR--LATVFAGIGFLLLLLAGLGNAAI 127 Query: 116 SAEGELSRL---------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L + V G N+ + K+L+T+Y + E++ +L+ + +GA+VL R Sbjct: 128 GTSAGLHQANYPTNAVGQVQTGGNIYQVAKLLFTRYVFAFEVTSALLITAALGAMVLAHR 187 Query: 167 HRRDIKR 173 R +R Sbjct: 188 QRVGRRR 194 >gi|255007681|ref|ZP_05279807.1| putative NADH dehydrogenase chain J [Bacteroides fragilis 3_1_12] gi|313145376|ref|ZP_07807569.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12] gi|313134143|gb|EFR51503.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12] Length = 170 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + I S L VT + + S L+F AG++ LLG F+ + ++ Sbjct: 3 LTLETVVFYFLAVFIIAMSILTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118 VY G ++V ++F I++ + + A K+ FL I+ A L+ + ++ V +++ Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDRAAHLKRSKFLAGLATTIVGAALVLFITLTHKFVPTSD 122 Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168 E + +++ IG L + +Y Y P E +LL ++G + L+ R R Sbjct: 123 PEPVEI-----SIKTIGHALLSSGKYGYVLPFEAVSILLLACIVGGL-LIARKR 170 >gi|291303391|ref|YP_003514669.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Stackebrandtia nassauensis DSM 44728] gi|290572611|gb|ADD45576.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Stackebrandtia nassauensis DSM 44728] Length = 173 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 9/173 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F + + ++ VVT + + + L+ A A FL+L AE VA + ++ Sbjct: 1 MTVTDVLLVAFGLLTLGAAVRVVTTAHLVRAGLWLVVALGGLAACFLVLTAELVAWVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL---IVCASNFMVFSA 117 +YVGAV+V LF +M+ I A P R +G AA L ++ A F S Sbjct: 61 IYVGAVVVLLLFAVMLTRAPIG-ASPEMDRARWPGAIVGA-AAGLGLSVLLADAFRWTSI 118 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + + +G ++ + P E+ +LL +++GAI++ + +RD Sbjct: 119 DAQ----AVEPGTAKRLGTEIFGNWVLPFELLSVLLLAALVGAILVSAKQKRD 167 >gi|313896077|ref|ZP_07829631.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas sp. oral taxon 137 str. F0430] gi|320529343|ref|ZP_08030431.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas artemidis F0399] gi|312975502|gb|EFR40963.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas sp. oral taxon 137 str. F0430] gi|320138309|gb|EFW30203.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas artemidis F0399] Length = 164 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 27/171 (15%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S FY+ + + +I + VV N ++S L+ +F+ A ++ +GAEF+ + L+VY G Sbjct: 2 SFIFYVLAAITVIGALGVVLSPNVVHSALFLVVSFIGVASMYFYIGAEFLGAVQLMVYSG 61 Query: 65 AVIVFFLFIIMMLDID-IEVAEPRKK------RGFL-GSFF----IGILAAELIVCASNF 112 AV V + IM+ D + + P +K G L G FF +GI+ A + Sbjct: 62 AVAVLIVMAIMLTRRDSMAHSNPSQKLFRRVVTGLLAGGFFFLMGLGIVLAPM------- 114 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +G L I ++ Y P EI +LL +MIGA++L Sbjct: 115 ----PDGMLG----APTGAHEIAALMLGAYVLPFEIGAVLLLAAMIGALLL 157 >gi|289474443|gb|ADC97833.1| NADH dehydrogenase subunit 6 [Corallium laauense] Length = 154 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 21/160 (13%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + S ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYISSPVIGSKTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVLM--------------LRHRRDIKRQDISKQL 180 ++M+GAI+L +R R+D+ Q K L Sbjct: 115 VAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRKHL 154 >gi|58045492|gb|AAW65073.1| NADH dehydrogenase subunit 6 [Cymathaere triplicata] Length = 311 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 +E KK+ L Sbjct: 81 VESPWSAKKKRLL 93 >gi|292385457|gb|ADE22016.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 E KK+ F F++GIL Sbjct: 81 TERPWSVKKKRF---FYLGIL 98 >gi|58045462|gb|AAW65058.1| NADH dehydrogenase subunit 6 [Egregia menziesii] Length = 311 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 4/81 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSLISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFLGSFFIGIL 101 IE KK+ L ++G+L Sbjct: 81 IESPWSAKKKRLL---YLGVL 98 >gi|315501488|ref|YP_004080375.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. L5] gi|315408107|gb|ADU06224.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. L5] Length = 182 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 18/192 (9%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +A+ + LVV R+ + + L+ AG +L+L AE VA + ++ Sbjct: 1 MTGADVLLLALGAVAVGAGALVVATRHLVRAGLWLVVCLGALAGDYLVLTAELVAWVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFS 116 +YVGAV+V LF +M+ I ++ + G+ AA L+ S ++ Sbjct: 61 IYVGAVVVLLLFAVMLTRAPIGPSDDLDRPGW---------AAALVGAGSGLGLAVLLID 111 Query: 117 AEGELSRLVFK-GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 A SR+ E +G+ L+ + P E+ +LL +++GAIVL R DI R+ Sbjct: 112 AF-RWSRVDLPVAGTAERLGEQLFRSWVLPFEVLSVLLLAALVGAIVL---SRPDIGRRS 167 Query: 176 ISKQLESNPDNS 187 D Sbjct: 168 TDTSAAQPADEG 179 >gi|50843377|ref|YP_056604.1| NADH dehydrogenase subunit J [Propionibacterium acnes KPA171202] gi|50840979|gb|AAT83646.1| NADH dehydrogenase I chain J [Propionibacterium acnes KPA171202] gi|315107933|gb|EFT79909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL030PA1] Length = 284 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 107/208 (51%), Gaps = 12/208 (5%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + ++++ ++V + P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + +G + I LA LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGV 133 Query: 118 EGE-----LSRL-VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169 G L + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 134 IGTDYPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKK 193 Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196 +R+ ++ ++ + ++ S V+ SG Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221 >gi|27464550|gb|AAO16126.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-A] Length = 147 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKADSQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYINNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185 +L + + L S D Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQD 137 >gi|257054401|ref|YP_003132233.1| NADH dehydrogenase subunit J [Saccharomonospora viridis DSM 43017] gi|256584273|gb|ACU95406.1| NADH dehydrogenase subunit J [Saccharomonospora viridis DSM 43017] Length = 304 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 94/186 (50%), Gaps = 27/186 (14%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+ + +V RN ++S L+ ++ L+L A+F+ ++VY Sbjct: 29 EAIAFWILGPLALAGALGMVFARNAVHSALWLVLTMLSLGMLYLAQQAQFLGFTQIIVYT 88 Query: 64 GAVIVFFLFIIMML-----DIDIEVAEPRKKR---GFLGSFFIGILAAEL------IVCA 109 GA+++ FLF++M++ D +EV R +R G +G G+LAA L + A Sbjct: 89 GAIMMLFLFVLMLVGRESSDSVVEVL--RGQRLMAGLVGVGVAGLLAAALTRAIADVTPA 146 Query: 110 SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL--MLRH 167 +SA+G + + ++++T Y +P E++ +L+ + + +VL RH Sbjct: 147 PLLDPWSADGGGAGGLG---------RLIFTDYLFPFELTAALLITAAMAGMVLSFTSRH 197 Query: 168 RRDIKR 173 + KR Sbjct: 198 VKGGKR 203 >gi|292385422|gb|ADE21990.1| NADH dehydrogenase subunit 6 [Ecklonia cava] Length = 311 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%) Query: 10 LFSFMAIISSFL---VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F F+A + L V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ Sbjct: 6 IFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAI 65 Query: 67 IVFFLFIIMMLDID-IEVAEPRKKRGFL 93 V LF++MMLD+ IE K++ L Sbjct: 66 AVLVLFVVMMLDVKAIERPWSSKEKRLL 93 >gi|15088741|ref|NP_150111.1| NADH dehydrogenase subunit 6 [Hyaloraphidium curvatum] gi|15077948|gb|AAK83433.1|AF402142_17 NADH dehydrogenase subunit 6 [Hyaloraphidium curvatum] Length = 165 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 3/75 (4%) Query: 8 FYLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++LF + I +S LV+T R+PI SV L+ ++ GLFLL+ F+ + ++VYVG Sbjct: 3 YWLFQILLISIVVSGLLVMTSRSPINSVIYLVLVYLAGGGLFLLMDHTFLGLTLIIVYVG 62 Query: 65 AVIVFFLFIIMMLDI 79 A+ + FLF + M+++ Sbjct: 63 AIAILFLFTVFMINL 77 >gi|27464580|gb|AAO16146.1| NADH dehydrogenase subunit 6 [Sinularia gaweli] Length = 147 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185 +L + + L S D Sbjct: 114 LLAKQPNSPFLYNSHGESLRSKQD 137 >gi|330944408|gb|EGH46423.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. pisi str. 1704B] Length = 169 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 1/81 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A +S+ V+T NP++++ LI + + A F LGA F ++ ++ Y GA++ Sbjct: 5 FYFASGIAFVSTLRVITNTNPVHALLYLIISLIAVAITFFSLGAPFAGVLEVIAYAGAIM 64 Query: 68 VFFLFIIMMLDI-DIEVAEPR 87 V F+F++MML++ + V + R Sbjct: 65 VLFVFVVMMLNLGPVSVQQER 85 >gi|268053559|ref|YP_003288918.1| NADH dehydrogenase subunit 6 [Saccharina japonica] gi|268053598|ref|YP_003288956.1| NADH dehydrogenase subunit 6 [Saccharina religiosa] gi|268053637|ref|YP_003288994.1| NADH dehydrogenase subunit 6 [Saccharina ochotensis] gi|268053676|ref|YP_003289071.1| NADH dehydrogenase subunit 6 [Saccharina diabolica] gi|226235325|dbj|BAH47633.1| NADH dehydrogenase subunit 6 [Saccharina japonica] gi|262318179|dbj|BAI48504.1| NADH dehydrogenase subunit 6 [Saccharina japonica] gi|262318218|dbj|BAI48542.1| NADH dehydrogenase subunit 6 [Saccharina religiosa] gi|262318257|dbj|BAI48580.1| NADH dehydrogenase subunit 6 [Saccharina ochotensis] gi|262318296|dbj|BAI48618.1| NADH dehydrogenase subunit 6 [Saccharina diabolica] Length = 311 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSTISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSAKKKRLL 93 >gi|58045468|gb|AAW65061.1| NADH dehydrogenase subunit 6 [Laminaria sinclairii] Length = 311 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKA 80 Query: 81 IEVAEPRKKRGFL 93 IE KK+ L Sbjct: 81 IESPWSVKKKRLL 93 Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N+I +K KS Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKNCP---ESLYRQLGRESKNAIFSIKEKS 297 >gi|95928464|ref|ZP_01311212.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Desulfuromonas acetoxidans DSM 684] gi|95135735|gb|EAT17386.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Desulfuromonas acetoxidans DSM 684] Length = 174 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 13/171 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY F + + F+ V R +++V L + AGL+ LG+ F+AM+ +++YVGAV Sbjct: 12 FYAFMILTFMGGFMAVRSRMLMHAVLGLAVSLFGVAGLYFHLGSPFLAMMQILIYVGAVC 71 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + + +M+ + +++ + R + +LA L C++ F+ + ++ Sbjct: 72 IMIVLGVMLGNTPDQLSSDKLSRRNM------LLA--LGACSTGFVTLFIAIQQTKFAPA 123 Query: 128 GNNVEN-----IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + IG+ L +Y E+ ILL ++IGAI+L R ++ + Sbjct: 124 AEKIGDMSIRFIGENLLFKYCLAFELISVILLTAIIGAIILARGGREEVAK 174 >gi|27464568|gb|AAO16138.1| NADH dehydrogenase subunit 6 [Alcyonium rudyi] gi|27464571|gb|AAO16140.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-B] gi|27464583|gb|AAO16148.1| NADH dehydrogenase subunit 6 [Sarcophyton trocheliophorum] Length = 147 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185 +L + + L S D Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQD 137 >gi|218129265|ref|ZP_03458069.1| hypothetical protein BACEGG_00842 [Bacteroides eggerthii DSM 20697] gi|317475237|ref|ZP_07934504.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides eggerthii 1_2_48FAA] gi|217988643|gb|EEC54963.1| hypothetical protein BACEGG_00842 [Bacteroides eggerthii DSM 20697] gi|316908690|gb|EFV30377.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides eggerthii 1_2_48FAA] Length = 170 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 8/170 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++++ FY + + S L VT R + S L+F AG++ LLG F+ + ++VY Sbjct: 5 LETIVFYFLAAFITVFSILTVTTRRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMVY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 G ++V ++F I++ + ++A K+ FL I A ++V + F A ++ Sbjct: 65 AGGIVVLYVFSILLTSGEGDIAGKLKRSKFLAGLGATIGGAIIVVFITLKHKFIATTDVV 124 Query: 123 RLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168 L N++ IG + + +Y Y P E +LL ++G + L+ R R Sbjct: 125 PLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGL-LIARKR 170 >gi|289474440|gb|ADC97831.1| NADH dehydrogenase subunit 6 [Corallium kishinouyei] Length = 154 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181 ++M+GAI+L + H RQD+ Q+ Sbjct: 115 VAMVGAILLAKQPNTPSLYDPHVETRSRQDLFLQIS 150 >gi|4588017|gb|AAD25954.1|AF087657_1 NADH-ubiquinone oxidoreductase chain 6 [Agrocybe aegerita] Length = 139 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 42/65 (64%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 SS + +T NPI S+ LI FV AA +L+G F+ + +V+YVGA+ V FLFIIMM+ Sbjct: 16 SSVISITFSNPIISIIFLITTFVQAACYLILIGINFIGISYIVIYVGAIAVLFLFIIMMI 75 Query: 78 DIDIE 82 I + Sbjct: 76 HIKLT 80 >gi|289474449|gb|ADC97837.1| NADH dehydrogenase subunit 6 [Corallium secundum] Length = 154 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGTHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181 ++M+GAI+L + H RQD+ Q+ Sbjct: 115 VAMVGAILLAKQPNTPSLYDSHVETRSRQDLFLQIS 150 >gi|312885981|ref|ZP_07745609.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603] gi|311301518|gb|EFQ78559.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603] Length = 183 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 12/183 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ + FY+ F+A+ S+ LV +N + S+F AGL++ A+FVA+ +V Sbjct: 1 MNIEQILFYVMGFIALASALLVAASKNLVRSLFLFFVTLFALAGLYVFALADFVAVTQIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI--EVAEPRKK---RGFLGSFFIGILAAELIVCA------ 109 +YVG V+V LF M+ + D+ + + K G L + + +L ++V A Sbjct: 61 IYVGGVLVLMLFAFMLSNKDVLNNLQQGNNKFISVGKLPALLVAVLFLIVLVNAIIKAQP 120 Query: 110 SNFMVFSAEGELSRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + A + ++ G+N + NIG L T+Y P E+ +L++++IGA L + Sbjct: 121 DSLPWIKASVQHDNVIKPGDNMLSNIGINLMTRYLLPFEVVSILLMMTLIGAAHLARKEE 180 Query: 169 RDI 171 + Sbjct: 181 HKL 183 >gi|290475909|ref|YP_003468804.1| NADH dehydrogenase I subunit J [Xenorhabdus bovienii SS-2004] gi|289175237|emb|CBJ82040.1| NADH dehydrogenase I chain J [Xenorhabdus bovienii SS-2004] Length = 175 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 65/104 (62%), Gaps = 5/104 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T N ++++ LI + + + +F LGA F + ++VY GA++ Sbjct: 5 FYVAGLVAILATLRVITHTNSVHALLYLITSLLALSVVFFSLGAYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIG--ILAAELIVC 108 V F+F++MML++ V E ++R +L +IG ILAA L++ Sbjct: 65 VLFVFVVMMLNLGKSVVE--QERAWLQLRVWIGPAILAAVLLIV 106 >gi|324309718|gb|ADY18499.1| NADH dehydrogenase subunit 6 [Phaeodactylum tricornutum] Length = 200 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 11/192 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV ++ FY FS +IS+ +VV ++PI+S+ L+ +F+ ++ + LL EF+A++ ++ Sbjct: 1 MVGANVLFYFFSIFLVISAAIVVFSQHPIFSLLFLVLSFLTSSFILFLLECEFLALLFVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASN-------- 111 VYVGA+ V FLF IMML+ + +A+ K G FF L SN Sbjct: 61 VYVGAIAVLFLFAIMMLEFKLHNLAKTLTKYIPAGIFFGIFSFFPLFQQVSNQFRTNFHS 120 Query: 112 -FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRR 169 F+ L+ +V G++LY+ + +G ILL+ +IG + L + + Sbjct: 121 DSFYFNKYTNWLDLIDATTDVVVYGQILYSYFVLQFLFAGLILLVVLIGVVYLTNNWNNQ 180 Query: 170 DIKRQDISKQLE 181 + Q I KQL Sbjct: 181 KVTDQAIFKQLS 192 >gi|53712157|ref|YP_098149.1| NADH dehydrogenase I chain J [Bacteroides fragilis YCH46] gi|60680341|ref|YP_210485.1| putative NADH dehydrogenase chain J [Bacteroides fragilis NCTC 9343] gi|253563805|ref|ZP_04841262.1| NADH dehydrogenase subunit I J [Bacteroides sp. 3_2_5] gi|265765488|ref|ZP_06093763.1| NADH dehydrogenase subunit I J [Bacteroides sp. 2_1_16] gi|52215022|dbj|BAD47615.1| NADH dehydrogenase I chain J [Bacteroides fragilis YCH46] gi|60491775|emb|CAH06533.1| putative NADH dehydrogenase chain J [Bacteroides fragilis NCTC 9343] gi|251947581|gb|EES87863.1| NADH dehydrogenase subunit I J [Bacteroides sp. 3_2_5] gi|263254872|gb|EEZ26306.1| NADH dehydrogenase subunit I J [Bacteroides sp. 2_1_16] gi|301161874|emb|CBW21418.1| putative NADH dehydrogenase chain J [Bacteroides fragilis 638R] Length = 170 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + I S L VT + + S L+F AG++ LLG F+ + ++ Sbjct: 3 LTLETVVFYFLAVFIIAMSILTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118 VY G ++V ++F I++ + + A K+ FL I+ A L+ + ++ V +++ Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDRAAHLKRSKFLAGLVTTIIGAILVLFITLTHKFVPTSD 122 Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168 E + +++ IG L + +Y Y P E +LL ++G + L+ R R Sbjct: 123 PEPVEI-----SIKTIGHALLSSGKYGYVLPFEAVSILLLACIVGGL-LIARKR 170 >gi|258651225|ref|YP_003200381.1| NADH dehydrogenase subunit J [Nakamurella multipartita DSM 44233] gi|258554450|gb|ACV77392.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nakamurella multipartita DSM 44233] Length = 293 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 30/194 (15%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + +A++ + +V ++ ++S L+ ++ L++ AEF+ + ++VY GA++ Sbjct: 30 FWILAPLAVLGAIGMVFSKSAVHSALWLVLTMLSLGCLYINQNAEFLGFVQIIVYTGAIM 89 Query: 68 VFFLFIIMML-----DIDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNFM- 113 + FLF++M+ D EV RK+R GF+ G+L A V A Sbjct: 90 MLFLFVLMLTGRDSGDSTFEVL--RKQRIVAIVLGIGFVVLLVTGLLRALKAVPAVGLSG 147 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR----R 169 ++ G L I ++L+T Y +P E++ +L+ + GA+VL + R Sbjct: 148 AYADRGPLG----------AIAELLFTDYLFPFELTSALLITAATGAMVLTHIEKAPGER 197 Query: 170 DIKRQDISKQLESN 183 + Q + +++ S+ Sbjct: 198 KSQGQRVRERMRSD 211 >gi|292385426|gb|ADE21993.1| NADH dehydrogenase subunit 6 [Ecklonia radiata] Length = 286 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%) Query: 10 LFSFMAIISSFL---VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F F+A + L V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ Sbjct: 6 IFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAI 65 Query: 67 IVFFLFIIMMLDID-IEVAEPRKKRGFL 93 V LF+ MMLD+ IE KK+ L Sbjct: 66 AVLELFVDMMLDVKAIERPWSSKKKRLL 93 >gi|27464547|gb|AAO16124.1| NADH dehydrogenase subunit 6 [Alcyonium digitatum] Length = 147 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYINNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLMLRHRRDIKRQDISKQLESNPD 185 +L + + L S D Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQD 137 >gi|237714288|ref|ZP_04544769.1| NADH dehydrogenase subunit I [Bacteroides sp. D1] gi|237719848|ref|ZP_04550329.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4] gi|262408335|ref|ZP_06084882.1| NADH dehydrogenase subunit I [Bacteroides sp. 2_1_22] gi|293373610|ref|ZP_06619958.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides ovatus SD CMC 3f] gi|294646449|ref|ZP_06724090.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides ovatus SD CC 2a] gi|294809421|ref|ZP_06768126.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides xylanisolvens SD CC 1b] gi|298480347|ref|ZP_06998545.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. D22] gi|229445780|gb|EEO51571.1| NADH dehydrogenase subunit I [Bacteroides sp. D1] gi|229451117|gb|EEO56908.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4] gi|262353887|gb|EEZ02980.1| NADH dehydrogenase subunit I [Bacteroides sp. 2_1_22] gi|292631435|gb|EFF50065.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides ovatus SD CMC 3f] gi|292638220|gb|EFF56597.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides ovatus SD CC 2a] gi|294443357|gb|EFG12119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides xylanisolvens SD CC 1b] gi|295086640|emb|CBK68163.1| NADH dehydrogenase subunit J [Bacteroides xylanisolvens XB1A] gi|298273628|gb|EFI15191.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. D22] Length = 170 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 15/175 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI---GILAAELIVCASNFMVFSAE 118 Y G ++V ++F I++ + + AE K+ L F G+ I +FM Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKAKRSKVLAGLFTMIAGLAIILFITLKHDFM----- 118 Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRR 169 + + L + ++ IG L + +Y Y P E +LL +IG I M+ +R Sbjct: 119 -QTANLAPQEISIHAIGNALLSSDKYGYVLPFEAVSILLLACIIGGI--MIARKR 170 >gi|292385477|gb|ADE22031.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 39/58 (67%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDV 78 >gi|291004460|ref|ZP_06562433.1| NADH dehydrogenase subunit J [Saccharopolyspora erythraea NRRL 2338] Length = 328 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 90/177 (50%), Gaps = 11/177 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F+ +A++ + +V RN ++S L+ + L++ A F+ ++VY Sbjct: 27 EAVVFWTLGPLALLGAMGMVFARNAVHSALWLVLTMLCLGVLYMAQSAPFLGFTQIIVYT 86 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFS 116 GA+++ FLF++MM+ D +EV R +R L + G+ A L+V A + Sbjct: 87 GAIMMLFLFVLMMVGRDSSDSVVEVL--RGQR--LAAALAGVGFAVLLVTGLARSLTDVP 142 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 L+ +G +G++++T Y +P E++ +L+ + +GA+VL + KR Sbjct: 143 VAAPLNPWSPQGGGAGGLGRLIFTDYLFPFELTSALLITAALGAMVLAYGGKGRAKR 199 >gi|134103321|ref|YP_001108982.1| NADH dehydrogenase subunit J [Saccharopolyspora erythraea NRRL 2338] gi|133915944|emb|CAM06057.1| NADH dehydrogenase I chain J [Saccharopolyspora erythraea NRRL 2338] Length = 329 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 90/177 (50%), Gaps = 11/177 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F+ +A++ + +V RN ++S L+ + L++ A F+ ++VY Sbjct: 28 EAVVFWTLGPLALLGAMGMVFARNAVHSALWLVLTMLCLGVLYMAQSAPFLGFTQIIVYT 87 Query: 64 GAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVC--ASNFMVFS 116 GA+++ FLF++MM+ D +EV R +R L + G+ A L+V A + Sbjct: 88 GAIMMLFLFVLMMVGRDSSDSVVEVL--RGQR--LAAALAGVGFAVLLVTGLARSLTDVP 143 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 L+ +G +G++++T Y +P E++ +L+ + +GA+VL + KR Sbjct: 144 VAAPLNPWSPQGGGAGGLGRLIFTDYLFPFELTSALLITAALGAMVLAYGGKGRAKR 200 >gi|197245037|dbj|BAG69143.1| NADH dehydrogenase subunit 6 [Aureophycus aleuticus] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVK- 79 Query: 82 EVAEP---RKKR 90 + P +KKR Sbjct: 80 AIESPWFAKKKR 91 >gi|58045490|gb|AAW65072.1| NADH dehydrogenase subunit 6 [Lessonia flavicans] gi|292385473|gb|ADE22028.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] gi|292385481|gb|ADE22034.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 39/58 (67%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +NP+YS L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDV 78 >gi|256831788|ref|YP_003160515.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Jonesia denitrificans DSM 20603] gi|256685319|gb|ACV08212.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Jonesia denitrificans DSM 20603] Length = 282 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 80/150 (53%), Gaps = 7/150 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F+ + + ++++ ++ R +++ S++F ++ A L++ A F+ + +VVY Sbjct: 6 EAVLFWSLAPLMVLAAMGLLFARKAVHATISVVFVMISLAVLYVANEAPFLGIAQVVVYT 65 Query: 64 GAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA+++ FLF+IM++ + D V R +R F+G F G LA L+ V G Sbjct: 66 GAIMMLFLFVIMLVGVGASDSLVETVRGQR-FIGVLFAGGLAIILLAFLGRLTVGPGVGH 124 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISG 150 + + +N I +VL + +PLE+ G Sbjct: 125 EATVA---DNPTAIARVLLGNFVFPLELVG 151 >gi|294140407|ref|YP_003556385.1| NADH dehydrogenase I subunit J [Shewanella violacea DSS12] gi|293326876|dbj|BAJ01607.1| NADH dehydrogenase I, J subunit [Shewanella violacea DSS12] Length = 294 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 48/75 (64%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + + +AIIS+ L V+ N ++++ L+ + A +F LLG+ F A + ++VY Sbjct: 1 MIDIIFCITAAVAIISALLTVSAHNVVHALLYLVTMMLAIALIFFLLGSPFAAALQIIVY 60 Query: 63 VGAVIVFFLFIIMML 77 GAV+V F+F+ MML Sbjct: 61 AGAVMVLFVFVTMML 75 >gi|161784246|ref|YP_001595562.1| NADH dehydrogenase ND6 subunit [Lemna minor] gi|221272328|sp|A9L9F0|NU6C_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|88696824|gb|ABD48549.1| NADH dehydrogenase ND6 subunit [Lemna minor] Length = 177 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 20/149 (13%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL + + ++LL + FVA L++YVGA+ V LF +M + + Sbjct: 30 TNPIYSAFSLGLVLICVSLFYILLNSYFVAAAQLLIYVGAINVLILFAVMFM-------K 82 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR----LVFKGN---------NVE 132 + L + +G L+ + F++ S + S K N NV+ Sbjct: 83 GSEYSNDLNLWTVGDGVTSLVCTSILFLLISTISDTSWYGIIWTTKANHIIEQDLISNVQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|27464586|gb|AAO16150.1| NADH dehydrogenase subunit 6 [Lobophytum pauciflorum] Length = 147 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 17/150 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLMLR---------HRRDIK-RQDISKQLE 181 +L + H ++ RQD+ Q+ Sbjct: 114 LLAKQPNSPFLYNFHGESLRSRQDLFLQIS 143 >gi|238061175|ref|ZP_04605884.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. ATCC 39149] gi|237882986|gb|EEP71814.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. ATCC 39149] Length = 190 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 15/180 (8%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 MA+ + LVVT R+ + + L+ AGL+L+L AE VA + +++YVGAV+V LF Sbjct: 1 MAVGAGALVVTTRHLVRAGLYLVVCLGALAGLYLVLTAELVAWVQVLIYVGAVVVLLLFA 60 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL-VFKGNNVE 132 +M+ I ++ + G+ + G L + + +R+ + + E Sbjct: 61 VMLTRAPIGASDDLDRPGWPAALIGGGTGLGLAALLVDAFRW------TRVDLPEPGTAE 114 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD-----ISKQLESNPDNS 187 +G+ ++ + P E+ +LL +++GA+VL R DI R+ + K PD + Sbjct: 115 RLGEQVFRTWVLPFEVLSVLLLAALVGAVVL---SRPDIGRRPADGRSLGKAGGPGPDAA 171 >gi|313836209|gb|EFS73923.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL037PA2] gi|314927644|gb|EFS91475.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL044PA1] gi|314971357|gb|EFT15455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL037PA3] gi|328906294|gb|EGG26069.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium sp. P08] Length = 284 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 99/208 (47%), Gaps = 14/208 (6%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + + ++ ++V R P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVCAALVIVFARKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + +G + + LA LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAIVAALAFVVLLILAVGNAVTTGV 133 Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 G + G+NV+ + ++++T+Y E + +L+ + +G +VL H Sbjct: 134 IGTDHPMGLGQANAAGGDNVKLLAELVFTKYVIVFEATSALLITAAVGTMVLA--HGEAD 191 Query: 172 KRQDISKQLESNPDNSIVMVKVKSGKGI 199 K++ Q E D V + S G+ Sbjct: 192 KKK---TQRERVTDRMAVYAQHGSHPGV 216 >gi|189468081|ref|ZP_03016866.1| hypothetical protein BACINT_04475 [Bacteroides intestinalis DSM 17393] gi|189436345|gb|EDV05330.1| hypothetical protein BACINT_04475 [Bacteroides intestinalis DSM 17393] Length = 171 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 14/171 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + + S L VT R + S L+F AG++ LLG F+ + ++ Sbjct: 3 ITLETVVFYFLAVFITVCSILTVTTRRMVRSATYLLFTLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMML----DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 VY G ++V ++F I++ D I+ + K LG+ G + I F+V + Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDRTIDKLKRSKLMAGLGATVGGAIIVLFITLKHKFIVTT 122 Query: 117 AEGELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVL 163 L N++ IG + + +Y Y P E +LL ++G +V+ Sbjct: 123 DLAPLE------INIKTIGHSMLSSDKYGYLLPFEAVSILLLACIVGGLVI 167 >gi|313183964|ref|YP_004021818.1| NADH-plastoquinone oxidoreductase subunit 6 [Equisetum arvense] gi|281371684|gb|ADA63617.1| NADH-plastoquinone oxidoreductase subunit 6 [Equisetum arvense] Length = 200 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 11/177 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV++ N IYS F L F F+ A L+L L A+F+A +++YVGAV V +F +M Sbjct: 20 ILGSLGVVSLSNIIYSAFLLGFVFICIALLYLTLNADFLAAAQILIYVGAVNVLIVFAVM 79 Query: 76 MLDIDIEVAEPRKKR-------GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 +++ E+ K S F+ + L SN ++S + ++ L Sbjct: 80 LINKPKEINTLEKWNISNNISLLLCTSLFVSLSFTILNTNWSN--LYSIQHSVNILDQMP 137 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 +N+ IG L T++ P E+ +LL+++IGAI + R I+ D S+ L+S + Sbjct: 138 SNIRLIGNNLLTKFLIPFELLSILLLVALIGAITIA-RRAEFIETGD-SESLKSKEE 192 >gi|219848529|ref|YP_002462962.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus aggregans DSM 9485] gi|219542788|gb|ACL24526.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus aggregans DSM 9485] Length = 217 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 49/75 (65%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+ + F + + ++++ +VV+VRN I+S LI F L++LL AEF+A++ ++V Sbjct: 3 VVVQIVFGIIALFILVAAVMVVSVRNVIHSALWLIACFFGVGALYMLLQAEFLAVVQVLV 62 Query: 62 YVGAVIVFFLFIIMM 76 YVGAV V LF IM+ Sbjct: 63 YVGAVSVLILFAIML 77 >gi|81230387|ref|YP_398774.1| NADH dehydrogenase subunit 6 [Aspergillus tubingensis] gi|77157975|gb|ABA62003.1| NADH dehydrogenase subunit 6 [Aspergillus tubingensis] Length = 217 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 37/180 (20%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT-LVVYVGAVIVFFLFIIMMLDIDIE-- 82 RNPI +V LI FV+ AG+ +L+G +++ + + ++V VGA FL I+M++++ I Sbjct: 38 RNPIVAVLFLIGLFVDIAGVLILVGIDYIGLSSYILVNVGAASTLFLLILMLINMRISEL 97 Query: 83 VAEPRKKRGF------LGSFFIGILAAE------LIVCASN--------------FMVFS 116 V+E + + L F IG + ++ +SN + Sbjct: 98 VSETNRDTPWAVITVSLFYFIIGQVTPSNFTDNTIVTSSSNSFSEVYDLQVDNEILNIVD 157 Query: 117 AEGELSRLVFKGNNVE--------NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + E + K + IG ++YT Y+ L IS ILL+ M+GAIV+ ++ + Sbjct: 158 LQQETASASSKSGDTSLVELPHLGGIGNIMYTNYSLWLIISSVILLVGMVGAIVITIKQK 217 >gi|329765839|ref|ZP_08257405.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137682|gb|EGG41952.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Nitrosoarchaeum limnia SFB1] Length = 170 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 17/184 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F S + I S+ + +R+ IY +L+ AG FLLL + FVAM L VY Sbjct: 1 MADVTFLALSVITIGSAIAALEMRSLIYGSIALMGTLGGIAGFFLLLDSPFVAMFQLAVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI---EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VG++ V LF +M++ ++ ++ + R+K F+GI + + A ++ + Sbjct: 61 VGSIAVLILFTVMLVKRELIFKKIEDKRRK-------FVGIALMLVFMVALGSIIMDSGI 113 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + NIG T Y L + IL S+ GA+VL +R+D+ + Sbjct: 114 KSITTNEPAVDFRNIGADFLTYYWPALILMALILTGSVTGALVLA-------RREDVENE 166 Query: 180 LESN 183 ++ Sbjct: 167 QRTD 170 >gi|289474446|gb|ADC97835.1| NADH dehydrogenase subunit 6 [Corallium sp. USNM 1075800] Length = 154 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 21/160 (13%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVLM--------------LRHRRDIKRQDISKQL 180 ++M+GAI+L +R R+D+ Q K L Sbjct: 115 VAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRKHL 154 >gi|291298807|ref|YP_003510085.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Stackebrandtia nassauensis DSM 44728] gi|290568027|gb|ADD40992.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Stackebrandtia nassauensis DSM 44728] Length = 256 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 93/184 (50%), Gaps = 9/184 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + + + + +V R+ ++S L + +++L F+ + ++VY Sbjct: 16 EAITFWILAPIILGGAIGMVLARSAVHSALLLACTMLGLGVIYMLQSGPFIGFVQIIVYT 75 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVC---ASNFMVFSAEG 119 GA+++ FLF+IM++ D + + RG + + +GI A L++C A SA G Sbjct: 76 GAIMMLFLFVIMLVGRDSKDSLLETLRGQRIAAIGLGIGMA-LLLCTGLARGVGAVSAVG 134 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L G NV+ I L+T+Y + E++ +L+ + +GA+VL H K + ++ Sbjct: 135 -LDEANANG-NVKGIAAELFTKYVFAFEVTSALLITAAVGAMVLA--HVEKAKEDKLGQK 190 Query: 180 LESN 183 S Sbjct: 191 KSSR 194 >gi|170727212|ref|YP_001761238.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Shewanella woodyi ATCC 51908] gi|169812559|gb|ACA87143.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Shewanella woodyi ATCC 51908] Length = 205 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 18/199 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + + +IS+ L VT N ++++ L+ + A +F L G+ F A + ++VY Sbjct: 1 MIEIIFITTAIVCVISALLTVTAHNAVHALLYLVTMMIAIALIFFLFGSPFAAALQIIVY 60 Query: 63 VGAVIVFFLFIIMMLD------IDIEVA-EPRKKRGFL--------GSFFIGILAAELIV 107 GAV+V F+F+ MML ID + + +G L IGI + Sbjct: 61 AGAVMVLFVFVTMMLHQGEQSIIDEKTLFSLKTAKGPLLLAVILVIELLLIGITPLDNSP 120 Query: 108 CASNFMVFSAEGE---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 + ++E + S +V+++ K LY Y + I+ +LL S+I AI + Sbjct: 121 SLTPLNTVNSESQQLSTSSKTPSLTSVKSLAKQLYGPYKLLVIIAAMLLLSSLIAAIHIA 180 Query: 165 LRHRRDIKRQDISKQLESN 183 + R + ++ ES Sbjct: 181 RKSSRLTENSPVNGDSESK 199 >gi|167764934|ref|ZP_02437055.1| hypothetical protein BACSTE_03326 [Bacteroides stercoris ATCC 43183] gi|167697603|gb|EDS14182.1| hypothetical protein BACSTE_03326 [Bacteroides stercoris ATCC 43183] Length = 170 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F++L +F+++ S L VT R + S L+F AG++ LLG F+ + ++VY G + Sbjct: 10 FYFLAAFISVFS-ILTVTTRRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMVYAGGI 68 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V ++F I++ + ++A K+ FL + A +++ + F A ++ L Sbjct: 69 VVLYVFSILLTSGEGDMAAKLKRSKFLAGLGATVAGAVIVLFITLKHKFIATTDIEPLEV 128 Query: 127 KGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168 N++ IG + + +Y Y P E +LL ++G + L+ R R Sbjct: 129 ---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGL-LIARKR 170 >gi|198276156|ref|ZP_03208687.1| hypothetical protein BACPLE_02345 [Bacteroides plebeius DSM 17135] gi|198270968|gb|EDY95238.1| hypothetical protein BACPLE_02345 [Bacteroides plebeius DSM 17135] Length = 171 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 11/172 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + FY+ I S L VT + + L+F + ++ +LG F++ + L+VY Sbjct: 5 LQEIVFYIVGACIIACSILAVTTGKILRAATYLLFVLLGTGAIYGILGYTFLSAVQLMVY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 G ++V ++F I++ D + + + ++ A L++ F+V + G Sbjct: 65 AGGIVVLYVFSILLTQSDKNMKYKINRAKLISVLLTIVIGAALVL----FLVMT-NGFAL 119 Query: 123 RLVFKGNN--VENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168 L+ +G VENIG L Q+ P E+ +LL MIGAI++ + + Sbjct: 120 NLIPQGVELPVENIGHALIGTGKYQFVLPFEVVSVLLLACMIGAILIARKQK 171 >gi|308275209|emb|CBX31806.1| hypothetical protein N47_N26310 [uncultured Desulfobacterium sp.] Length = 165 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 76/143 (53%), Gaps = 4/143 (2%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +FL V + ++++ L A G++L LG++FVAM+ L++YVGA+ + ++F I ML Sbjct: 17 AFLAVIPKKIVHNILGLALAMFGITGVYLYLGSQFVAMMQLLIYVGAICMTYIFAI-MLS 75 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 +E PR+ + + ++ M+ S + E + +++ +G++L Sbjct: 76 PPLEKELPRRNK---LKVITATAVSSIVFIVMVKMILSLKIEPIADATRDWSIKTLGQLL 132 Query: 139 YTQYAYPLEISGFILLLSMIGAI 161 T+Y E+ +L +++IG+I Sbjct: 133 LTRYFLVFELISLLLAIAIIGSI 155 >gi|284009328|emb|CBA76494.1| NADH-quinone oxidoreductase chain J [Arsenophonus nasoniae] Length = 177 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 52/81 (64%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +AI+++ V+T NP++++ LI + + A +F +G+ F + ++VY GA++ Sbjct: 5 FYVAGLVAILATLRVITHTNPVHALLYLIVSLLVLAIVFFAVGSYFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRK 88 V F+F++MML++ V + + Sbjct: 65 VLFVFVVMMLNLGKSVVDQER 85 >gi|261416520|ref|YP_003250203.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372976|gb|ACX75721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327558|gb|ADL26759.1| NADH-quinone oxidoreductase, J subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 180 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 51/73 (69%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 ++F + + +A+ S+ V+ R+P+Y SL+ + V+ AG++ LLG+ F+ ++ ++VY GA Sbjct: 5 IYFIVLAVIAVGSAVCVLLSRHPLYGALSLVASMVSLAGIYGLLGSPFLGVVQIMVYAGA 64 Query: 66 VIVFFLFIIMMLD 78 +++ F+IM+L+ Sbjct: 65 IMMLLTFVIMVLN 77 >gi|261886062|ref|ZP_06010101.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 164 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 23/177 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ F FS AI+ S ++ + PI+ SLI V+ AGL+LLL A+ + +I +VVY Sbjct: 1 MELFLFINFSLFAILGSLGLILFKAPIHGALSLIVTLVSIAGLYLLLFAKTLFLIQIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--------GILAAELIVCASNFMV 114 GA++V +F++M +I + + K SFF+ IL E+ S+F + Sbjct: 61 AGAIMVLSVFVMMFFNIKSDTLFVKLKP---KSFFVIIPPTVIFAILLDEIWKLPSDFAI 117 Query: 115 FSAE-GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + GE ++ +G L+T + E +L ++IG +V +L+ + + Sbjct: 118 APLDFGE----------IQPLGFYLFTNWGLSFEAISLLLTAALIG-VVAILKGKNN 163 >gi|329957593|ref|ZP_08298068.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides clarus YIT 12056] gi|328522470|gb|EGF49579.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides clarus YIT 12056] Length = 170 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 8/170 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++++ FY + + S L VT + + S L+F AG++ LLG F+ + ++VY Sbjct: 5 LETIVFYFLAAFITVFSILTVTTKRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMVY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 G ++V ++F I++ + ++A K+ FL + A +++ + F A +++ Sbjct: 65 AGGIVVLYVFSILLTSGEGDMAGKLKRSKFLAGLGTTVAGAVIVLFITLKHKFIATTDVA 124 Query: 123 RLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168 L N++ IG + + +Y Y P E +LL ++G + L+ R R Sbjct: 125 PLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGL-LIARKR 170 >gi|27464589|gb|AAO16152.1| NADH dehydrogenase subunit 6 [Xenia sp. CSM-2002] gi|27464592|gb|AAO16154.1| NADH dehydrogenase subunit 6 [Asterospicularia randalli] Length = 154 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 7/122 (5%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV- 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVIIASLVLLVAMIGAI 113 Query: 162 VL 163 +L Sbjct: 114 LL 115 >gi|160891175|ref|ZP_02072178.1| hypothetical protein BACUNI_03622 [Bacteroides uniformis ATCC 8492] gi|270294466|ref|ZP_06200668.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317481071|ref|ZP_07940150.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides sp. 4_1_36] gi|156859396|gb|EDO52827.1| hypothetical protein BACUNI_03622 [Bacteroides uniformis ATCC 8492] gi|270275933|gb|EFA21793.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902784|gb|EFV24659.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides sp. 4_1_36] Length = 170 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + + S L VT + S L+F AG++ LLG F+ + ++ Sbjct: 3 ITLETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ + +V E K+ FL + A ++V + F A + Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDVIEKLKRSRFLAGLGATVGGAIIVVFITLKHKFIATTD 122 Query: 121 LSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168 + L N++ IG + + +Y Y P E +LL ++G + L+ R R Sbjct: 123 VEPLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGL-LIARKR 170 >gi|325610525|gb|ADZ36471.1| NADH dehydrogenase subunit 6 [Franklinia alatamaha] Length = 176 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 22/163 (13%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F+ I+SS V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F Sbjct: 17 FVLILSSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIF 76 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--K 127 +M ++ K L + GI + +VC S F+ + +++ K Sbjct: 77 AVMFMN-----GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATK 128 Query: 128 GN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N N + IG L T + P E+ ILL+++IGAI Sbjct: 129 SNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|163847541|ref|YP_001635585.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus aurantiacus J-10-fl] gi|222525391|ref|YP_002569862.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus sp. Y-400-fl] gi|163668830|gb|ABY35196.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus aurantiacus J-10-fl] gi|222449270|gb|ACM53536.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus sp. Y-400-fl] Length = 216 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 11/184 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + + ++S+ +VV+VRN I++ LI F L++LL AEF+A++ +++YVG Sbjct: 6 QIVFGVIALFILVSAAMVVSVRNVIHAALWLIACFFGVGALYMLLEAEFLAVVQVLIYVG 65 Query: 65 AVIVFFLFIIMML-DIDIEVAEPRKKR-----GFLGSFFIGILAAELIVCASNFMVFSAE 118 AV V LF IM+ I E R F ++A LI N Sbjct: 66 AVSVLILFAIMLTRQITGEGIRQLTTRWPVVLAIAVLLFATVMAPTLINQQWNVPPAPPI 125 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDIS 177 G + +G+ ++ ++ G +L +++IGAIV+ R R K ++ Sbjct: 126 GTPEPIAGPA----ELGRGFVNEFLLQFQVVGVLLTVALIGAIVIAYEERARRRKVLTLA 181 Query: 178 KQLE 181 ++LE Sbjct: 182 EELE 185 >gi|289474467|gb|ADC97849.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora] Length = 154 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 7/129 (5%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKADYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYISDPVIGYRTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVL 163 ++M+GAI+L Sbjct: 115 VAMVGAILL 123 >gi|289474458|gb|ADC97843.1| NADH dehydrogenase subunit 6 [Paracorallium sp. USNM 1089600] Length = 154 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 21/160 (13%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVYYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVLM--------------LRHRRDIKRQDISKQL 180 ++M+GAI+L +R R+D+ Q K L Sbjct: 115 VAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRKHL 154 >gi|27544895|ref|NP_775410.1| NADH dehydrogenase subunit 6 [Lecanicillium muscarium] gi|27450727|gb|AAO14669.1|AF487277_15 NADH dehydrogenase subunit 6 [Lecanicillium muscarium] Length = 214 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 30/194 (15%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +A++ V+ +NPI S+ LI F + + +L G F+ L+VY+GAV Sbjct: 21 FLDILSVIAVLFGITVIVNKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 80 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFMVFSA 117 + FLFI+M+++I + + FIGIL L + +N+++ S Sbjct: 81 SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 140 Query: 118 EG----------ELSRLVFKGNN-----------VENIGKVLYTQYAYPLEISGFILLLS 156 + S ++F +N + IG +LYT Y L +S ILLL+ Sbjct: 141 NYNNVLPAVHNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 200 Query: 157 MIGAIVLMLRHRRD 170 M+GAI++ ++ + Sbjct: 201 MVGAIIITIKQENN 214 >gi|320449681|ref|YP_004201777.1| NADH-quinone oxidoreductase subunit J [Thermus scotoductus SA-01] gi|320149850|gb|ADW21228.1| NADH-quinone oxidoreductase, subunit J [Thermus scotoductus SA-01] Length = 179 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 43/60 (71%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 + LVVT++N I++ +LI F+ AGL++ L A F+ I ++VY GA++V FLF+IM+L Sbjct: 15 TGVLVVTLKNAIHAALALIGNFLVLAGLYVALEARFLGFIQIIVYAGAIVVLFLFVIMLL 74 >gi|226315024|ref|YP_002774920.1| NADH dehydrogenase subunit J [Brevibacillus brevis NBRC 100599] gi|226097974|dbj|BAH46416.1| NADH-quinone oxidoreductase chain J [Brevibacillus brevis NBRC 100599] Length = 169 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ S + I + +++ ++ V SL F++ AGLF+LLGAEFV + ++VY GA+ Sbjct: 8 FFILSLLTIGGAVFMISFTRVVHMVISLGVTFISIAGLFVLLGAEFVGVAQILVYSGAIS 67 Query: 68 VFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + LF IM+ D K R L F+ +L L N + Sbjct: 68 ILMLFGIMLTKHDANDEGTGRTWKNRFIL--LFVIVLFGLLFWGVQNTPWPAPPPPADAP 125 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 V NN + IG ++T++ P E+ +LL++++GAI++ + + Sbjct: 126 V---NNAKEIGIEVFTKFVIPFELLSVLLLVALVGAIIMAKKEGDN 168 >gi|145592967|ref|YP_001157264.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora tropica CNB-440] gi|145302304|gb|ABP52886.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora tropica CNB-440] Length = 187 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 8/170 (4%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S L V R+ + + L+ AG++L+L AE VA + +++YVGAV+V LF +M+ Sbjct: 18 SGALAVATRHLVRAGLYLVVCLAAVAGMYLVLTAELVAWVQVLIYVGAVVVLLLFAVMLT 77 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKV 137 I + + G+ + G L + +S S + + E IG+ Sbjct: 78 RAPIGASTDLDRPGWPAALIGGGTGLGLAALLVDAYRWS-----SVPLPTAGSAERIGEQ 132 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187 ++ + P E+ +LL +++GAI+L R DI R + S D + Sbjct: 133 IFGSWVLPFEVLSVLLLAALVGAIIL---SRPDIGRSPMDPAGVSAADEA 179 >gi|303247485|ref|ZP_07333757.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio fructosovorans JJ] gi|302491181|gb|EFL51073.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio fructosovorans JJ] Length = 171 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 7/172 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F ++ + + L VT + + ++ L+ A AGL+LLL A+FVA++ ++ Sbjct: 4 MYLGQFAFAFYTLIVLAGGGLAVTAASLVRAMLGLVVALFGVAGLYLLLLADFVALMQIL 63 Query: 61 VYVGAVIVFFLFIIMML--DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 +YVGAV V F IM+ D AE G L + ++ A ++V + + Sbjct: 64 IYVGAVTVLIFFAIMLTRAAADGGEAEGPGAAGILRAIPAFLVPAGILVP-----LLAVY 118 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G + K + + +G L Y E+ +LL +M GA++L R Sbjct: 119 GAVGFPTPKNVSPDQLGAGLLGPYTLAFELISVVLLAAMAGAVILAFEKREP 170 >gi|156960020|gb|ABU98488.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 7/137 (5%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L + Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 169 RDIKRQDISKQLESNPD 185 S+ L S D Sbjct: 114 SPFLYNSHSESLRSKQD 130 >gi|289474464|gb|ADC97847.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora] gi|289474470|gb|ADC97851.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora] gi|289474491|gb|ADC97865.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora] Length = 154 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 7/129 (5%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYISDPVIGYRTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVL 163 ++M+GAI+L Sbjct: 115 VAMVGAILL 123 >gi|163751854|ref|ZP_02159069.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Shewanella benthica KT99] gi|161328270|gb|EDP99432.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Shewanella benthica KT99] Length = 208 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 48/76 (63%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + + +AIIS+ L V+ N ++++ L+ + A +F +LG+ F A + ++VY Sbjct: 1 MIDIIFCISAAVAIISALLTVSAHNVVHALLYLVTMMLAIALIFFMLGSPFAAALQIIVY 60 Query: 63 VGAVIVFFLFIIMMLD 78 GAV+V F+F+ MML Sbjct: 61 AGAVMVLFVFVTMMLH 76 >gi|329962488|ref|ZP_08300488.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides fluxus YIT 12057] gi|328530044|gb|EGF56932.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides fluxus YIT 12057] Length = 170 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++++ FY + + S L VT + S L+F AG++ LLG F+ + ++VY Sbjct: 5 LETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMVY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 G ++V ++F I++ + ++A K+ FL I A +++ + F A ++ Sbjct: 65 AGGIVVLYVFSILLTSGEGDIAGKLKRSKFLAGLGTTIGGAVIVLFITLNHKFIATTDVE 124 Query: 123 RLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168 L N++ IG + + +Y Y P E +LL ++G + L+ R R Sbjct: 125 PLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGL-LIARKR 170 >gi|11465931|ref|NP_050064.1| NADH dehydrogenase subunit 6 [Pedinomonas minor] gi|4378775|gb|AAD19673.1| NADH dehydrogenase subunit 6 [Pedinomonas minor] Length = 190 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 9/171 (5%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 + +N I ++ +F+ A ++LL F+ +I ++VYVGAV+V FLF+IMM+ + I Sbjct: 24 ILTKNAILVALYIVGSFILAGLIYLLANFPFLGVILILVYVGAVVVLFLFVIMMIPLRIV 83 Query: 83 VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGKVLYT 140 E F F +L L+ S+F + S E L+F+ N + + ++Y Sbjct: 84 FFENNFSIFFFNYFLWTVL---LVFFFSSFDILSTSFE---LIFQSRTNLFQLLALIIYL 137 Query: 141 QYAYPLEISGFILLLSMIGAI-VLMLRHRRDIKRQDISKQLESNPDNSIVM 190 + + F+L +SMIGAI + + ++ I+ QL N + V+ Sbjct: 138 DNVWYFLFAAFLLTISMIGAISITQTKSVNKNFKEIINIQLNKNYKSDFVL 188 >gi|139390402|ref|YP_001122999.1| NADH dehydrogenase ND6 [Aethionema cordifolium] gi|221272305|sp|A4QJG9|NU6C_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286195|dbj|BAF49824.1| NADH dehydrogenase ND6 [Aethionema cordifolium] Length = 176 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 10/148 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D Sbjct: 26 VVLFPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAITVLIIFAVMFMN-DS 84 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVC-ASNFMVFSAEG-----ELSRLVFKG--NNVEN 133 E + R +G ++ ++ S + S G L++++ + +N + Sbjct: 85 EYST-DLNRWTVGDGITSVICTTILFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQ 143 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 144 IGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|269977607|ref|ZP_06184574.1| NADH dehydrogenase subunit j [Mobiluncus mulieris 28-1] gi|307701312|ref|ZP_07638333.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mobiluncus mulieris FB024-16] gi|269934210|gb|EEZ90777.1| NADH dehydrogenase subunit j [Mobiluncus mulieris 28-1] gi|307613473|gb|EFN92721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mobiluncus mulieris FB024-16] Length = 352 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 78/160 (48%), Gaps = 1/160 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++F + S A++ V R +++ ++ ++ AG++ LGAEF+ + +VVY Sbjct: 21 QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ LF+IM++ + + PR+ + + A I+ + + Sbjct: 81 GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +N I + QY +P+E+ +L+++ +GA+ L Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTL 179 >gi|328950040|ref|YP_004367375.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Marinithermus hydrothermalis DSM 14884] gi|328450364|gb|AEB11265.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Marinithermus hydrothermalis DSM 14884] Length = 187 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 48/73 (65%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 SLF + + I+++ VVT+RN +++ +L F+ A +++ L A F+ I ++VY G Sbjct: 2 SLFDLVAGLLLILTAVAVVTLRNAVHAALALAGNFLVLAAVYMALDARFLGWIQVIVYAG 61 Query: 65 AVIVFFLFIIMML 77 A++V FLF+IM+L Sbjct: 62 AIMVLFLFVIMLL 74 >gi|309322498|ref|YP_003934011.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus grandis] gi|308223332|gb|ADO23640.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus grandis] Length = 176 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + NPIYS FSL V + ++L + FVA L++YVGA+ V LF +M Sbjct: 20 ILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVM 79 Query: 76 ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 + D+++ S + ++ L + + ++ G Sbjct: 80 FMNGSEYYKDLNLWTVGDGITSLVCTSILVSLMTTILDTSWYGIIWTTKSNQIIEQDLIG 139 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N+ + IG L T + P E+ ILL+++IGAI Sbjct: 140 NS-QQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|290489880|gb|ADD31347.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Plumbago auriculata] Length = 176 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 22/155 (14%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+ NPI+S FSL F + + ++L ++FVA L++YVGA+ V LF +M I Sbjct: 26 VIFFTNPIFSAFSLGFVLLCISLFYILENSQFVASAQLLIYVGAINVLILFAVMF----I 81 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEG-----ELSRLVFKG- 128 +E K F + IG LI C S F++ S G L+ +V + Sbjct: 82 NDSEYDKDFHF---WTIGDGITSLI-CTSLFVLLITSILNTSWYGIVWTTRLNHIVEQDL 137 Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 NN + IG L T + P E+ ILL+++IGAI Sbjct: 138 INNSQQIGIHLSTDFFLPFELISIILLVALIGAIT 172 >gi|301353200|ref|YP_003795198.1| Nad6p [Candida subhashii] gi|262410217|gb|ACY66210.1| Nad6p [Candida subhashii] Length = 149 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 17/155 (10%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 I+S +++ +PI+S+ S++ F+ AA L G + ++ +++YVGA+ + FLFI+ + Sbjct: 7 IASLMILADLSPIHSILSMLVLFITAALSLYLAGYHLMGILYVLIYVGAIAILFLFIVSL 66 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----NNV 131 L I +A K + ++ A+ + F R+V + + Sbjct: 67 LKIK-HLANTVKTSPLV-----------VVALATVLIPFDLTLGERRVVEEAPSLAYQEL 114 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 ++G LY A L ++G IL+LS+IGAI + R Sbjct: 115 SHVGTYLYCDSAIMLVVTGVILILSIIGAIAVTRR 149 >gi|38639908|ref|NP_943719.1| NADH dehydrogenase subunit 6 [Penicillium marneffei] gi|33860262|gb|AAQ54920.1| NADH dehydrogenase subunit 6 [Penicillium marneffei] Length = 194 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 27/183 (14%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 ++I+ L++ +NPI SV LI FVN + L +L+G F+ + ++VYVGAV + FLFI Sbjct: 11 LSIVFGVLIIINKNPIISVLYLIGLFVNISVLLILVGFGFIGLSYILVYVGAVSILFLFI 70 Query: 74 IMMLDIDI-EVAEPRKKRGFLG-------SFFIG-ILAAELIVCASN------------- 111 +M+++I I E+ L F +G IL I+ +N Sbjct: 71 LMLINIRISELTNETSNYTPLAILTVMLFYFLVGRILPGNFILLNTNLVNSYIIDTYVNE 130 Query: 112 -----FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +++ + ++ IG V+YT YA L I+ ILLL+M+G+IV+ + Sbjct: 131 HIYDELIQYASSKSWDTSLVDMTHITGIGNVMYTNYAILLIIASIILLLAMVGSIVITKK 190 Query: 167 HRR 169 + Sbjct: 191 GDK 193 >gi|289474482|gb|ADC97859.1| NADH dehydrogenase subunit 6 [Paragorgia wahine] Length = 154 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKADYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181 ++M+GAI+L + H RQD+ Q+ Sbjct: 115 VAMVGAILLAKQPNTPPLYHPHVGTHSRQDLFLQIS 150 >gi|306817877|ref|ZP_07451616.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|304649356|gb|EFM46642.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] Length = 352 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 78/160 (48%), Gaps = 1/160 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++F + S A++ V R +++ ++ ++ AG++ LGAEF+ + +VVY Sbjct: 21 QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ LF+IM++ + + PR+ + + A I+ + + Sbjct: 81 GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +N I + QY +P+E+ +L+++ +GA+ L Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTL 179 >gi|227874593|ref|ZP_03992756.1| NADH dehydrogenase subunit J [Mobiluncus mulieris ATCC 35243] gi|227844802|gb|EEJ54948.1| NADH dehydrogenase subunit J [Mobiluncus mulieris ATCC 35243] Length = 353 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 78/160 (48%), Gaps = 1/160 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++F + S A++ V R +++ ++ ++ AG++ LGAEF+ + +VVY Sbjct: 21 QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ LF+IM++ + + PR+ + + A I+ + + Sbjct: 81 GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +N I + QY +P+E+ +L+++ +GA+ L Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTL 179 >gi|139389318|ref|YP_001123083.1| NADH dehydrogenase ND6 [Aethionema grandiflorum] gi|221272306|sp|A4QJQ3|NU6C_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286280|dbj|BAF49908.1| NADH dehydrogenase ND6 [Aethionema grandiflorum] Length = 176 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 10/148 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D Sbjct: 26 VVLFTNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAITVLIIFAVMFMN-DS 84 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVC-ASNFMVFSAEG-----ELSRLVFKG--NNVEN 133 E + R +G ++ ++ S + S G L++++ + +N + Sbjct: 85 EYST-DLNRWTVGDGITSLICTTILFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQ 143 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 144 IGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|292385485|gb|ADE22037.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] gi|292385489|gb|ADE22040.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] gi|292385493|gb|ADE22043.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] gi|292385497|gb|ADE22046.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] gi|292385501|gb|ADE22049.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] Length = 311 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 38/58 (65%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +NP+Y L+ F + + LLG EF+A++ L+VY GA+ V LF++MMLD+ Sbjct: 21 VTSTQNPVYRGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDV 78 >gi|297625737|ref|YP_003687500.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921502|emb|CBL56056.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 289 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 77/146 (52%), Gaps = 3/146 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++ F++ +++I+ +V R P++S L V AGL+ L A F+ + ++VY Sbjct: 8 QAVAFWVLGPLSVIAGVGMVVNRKPVHSALCLAGLMVCLAGLYASLDAPFLFVAQIIVYT 67 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV++ F+F +M++ ID E+ E K + + L A L++ + +V S G L Sbjct: 68 GAVMMLFVFTMMVIGIDTVDEMIETIKGQRVAAIIGVVGLLALLVLAVGHGIVSSPAG-L 126 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147 + NV ++ ++++ Y +P E Sbjct: 127 EQATGADGNVRSLAYLIFSDYVFPFE 152 >gi|118475160|ref|YP_891370.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp. fetus 82-40] gi|118414386|gb|ABK82806.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp. fetus 82-40] Length = 164 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 23/177 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ F FS AI+ S ++ + PI+ SLI V+ AGL+LLL A+ + +I +VVY Sbjct: 1 MELFLFINFSLFAILGSLGLILFKAPIHGALSLIVTLVSIAGLYLLLFAKTLFLIQIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--------GILAAELIVCASNFMV 114 GA++V +F++M +I + + K SFF+ IL E+ S+F + Sbjct: 61 AGAIMVLSVFVMMFFNIKSDTLFVKLKP---KSFFVIIPPTVIFAILLDEIWKLPSDFGI 117 Query: 115 FSAE-GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + GE ++ +G L+T + E +L ++IG +V +L+ + + Sbjct: 118 APLDFGE----------IKPLGFYLFTNWGLSFEAISLLLTAALIG-VVAILKGKNN 163 >gi|86553036|gb|ABC98216.1| NADH dehydrogenase subunit 6 [Chlamydomonas incerta] Length = 162 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 15/140 (10%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-IEVA 84 ++P S+ + F+N++ + ++LG EF+A++ L+VYVGA+ V FLF+IM+L+I E+ Sbjct: 22 KSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIPATELR 81 Query: 85 EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKVLYT 140 + LG F + V F + + G R + G ++ N+G LY Sbjct: 82 AYSRGWSTLGIF--------VFVVNGVFQITPSMGP--RGIITGLPGAESITNLGHALYL 131 Query: 141 QYAYPLEISGFILLLSMIGA 160 +A L ++ +L +++ GA Sbjct: 132 YFADLLILNSLVLTVALFGA 151 >gi|161527790|ref|YP_001581616.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Nitrosopumilus maritimus SCM1] gi|160339091|gb|ABX12178.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosopumilus maritimus SCM1] Length = 170 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 17/184 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F + + I S+ + +R+ +Y +L+ AG F LL A FVA+ L VY Sbjct: 1 MADAAFLALTVITIGSAIAALELRSLVYGSIALMGTLGGIAGFFFLLDAPFVALFQLAVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VG++ V LF +M++ ++ + K+R F G IG++ ++ + F+ + + Sbjct: 61 VGSIAVLILFTVMLVKRELIFKKIEDKRRKFAG---IGLMLVIMVALGAVFL----DSGI 113 Query: 122 SRLVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + V+ +IG T Y L + G IL S+ GA+VL KR+D+ Sbjct: 114 KTITTDEPPVDFRDIGTDFVTYYWPALILMGLILAGSVTGALVLA-------KREDVEND 166 Query: 180 LESN 183 ++ Sbjct: 167 QRTD 170 >gi|225155888|ref|ZP_03724373.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae bacterium TAV2] gi|224803341|gb|EEG21579.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae bacterium TAV2] Length = 178 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 19/180 (10%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L L + ++++ +++RN I S L+ A++ A +L GAEFVA ++VYVGA Sbjct: 2 LTLLLIAAFTLVTAAAALSLRNIIRSAIFLVPAWIGIAAFYLWAGAEFVAFAQVLVYVGA 61 Query: 66 V--IVFFLFIIMMLDIDIEVAEPRKKRGF----------LGSFFIGILAAELIVCASNFM 113 + +V F ++ D EP +R F IL L S + Sbjct: 62 ISMVVLFAVVLTRRAPDDPAEEPATRRRLNWAVAAGGAVAAMIFAAILCTALPSPDSAAL 121 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIK 172 A S ++++G L ++A + I+G +L ++++G+I+L + RD + Sbjct: 122 ASDAPPPPSL------TIKDLGHALTGEHAAAVLITGALLTVALLGSILLAATDKPRDAR 175 >gi|330997241|ref|ZP_08321094.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paraprevotella xylaniphila YIT 11841] gi|329571036|gb|EGG52743.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paraprevotella xylaniphila YIT 11841] Length = 171 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 13/168 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + S M + S L VT + + +L+F AGL+ +LG ++ + L VY G ++ Sbjct: 11 FGVVSLMMAVCSVLAVTSGRILRAATALLFVLFGTAGLYFMLGYTYLGAVQLSVYAGGIV 70 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA----ELIVCASNFMVFSAEG--EL 121 V ++F I++ D + E R RG + + +LA ++ + F FS EL Sbjct: 71 VLYVFSILLTRSDKNMNE-RIPRGRWFAAMLTVLAGFGLTVFLLSSYGFARFSVPPLVEL 129 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V GN + +GK Q+ P E+ +LL MIGAI M+ +R Sbjct: 130 DP-VKVGNALVGMGKY---QFVLPFEVVSVLLLACMIGAI--MIARKR 171 >gi|218660274|ref|ZP_03516204.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli IE4771] Length = 121 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 21/132 (15%) Query: 48 LLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-------- 99 +L A F+A+I + VYVGA++V FLF+IMM+D+ + L F G Sbjct: 1 MLEAPFLAVIQIFVYVGAIMVLFLFVIMMIDV---------REAVLQRFLPGGNLLALML 51 Query: 100 --ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSM 157 +L E++V FS ++ + G+ + + L+ Y P EI+ ILL ++ Sbjct: 52 VVVLGLEMLVLVLWSDRFSVIEPVA--MRGGDQIRQLSTTLFADYLLPFEIASVILLAAL 109 Query: 158 IGAIVLMLRHRR 169 +GAIVL + + Sbjct: 110 VGAIVLARKEQE 121 >gi|197131418|gb|ACH47227.1| NADH-plastoquinone oxidoreductase subunit 6 [Sarcocaulon vanderietiae] Length = 176 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 22/150 (14%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL F F+ + ++L FVA L++YVGA+ V LF +M ++ Sbjct: 30 TNPIFSAFSLGFVFICISLFYILANCHFVAASQLLIYVGAINVLILFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCA-------SNFMVFSAEG-----ELSRLVFKG--NNV 131 K LG+ G + +VC SN + S G ++++ K +N Sbjct: 85 EYSKDLNLGTVGDGTTS---LVCTTLFLSIISNILDTSWYGIIWTTRANQIIEKDLISNS 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 142 QQIGIRLSTDFFLPFELISIILLVALIGAI 171 >gi|325610509|gb|ADZ36457.1| NADH dehydrogenase subunit 6 [Schima khasiana] Length = 176 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 22/163 (13%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F+ I++S V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F Sbjct: 17 FVLILASLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIF 76 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--K 127 +M ++ K L + GI + +VC S F+ + +++ K Sbjct: 77 AVMFMN-----GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATK 128 Query: 128 GN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N N + IG L T + P E+ ILL+++IGAI Sbjct: 129 SNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|306486044|gb|ADM92669.1| NADH-plastoquinone oxidoreductase subunit 6 [Franklinia alatamaha] Length = 158 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 22/160 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+SS V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M Sbjct: 2 ILSSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVM 61 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN- 129 ++ K L + GI + +VC S F+ + +++ K N Sbjct: 62 FMN-----GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATKSNQ 113 Query: 130 --------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N + IG L T + P E+ ILL+++IGAI Sbjct: 114 ILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 153 >gi|156573609|gb|ABU85140.1| NADH-plastoquinone oxidoreductase subunit 6 [Yucca schidigera] Length = 176 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 32/173 (18%) Query: 13 FMAIISSFL------VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F+ + SFL VV NPIYS FSL V + ++ + FVA L++YVGA+ Sbjct: 11 FVVFLGSFLILGGLGVVLFTNPIYSAFSLGLVLVCISLFYIPSNSYFVAAPQLLIYVGAI 70 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 V +F IM ++ +L + GI + +VC S ++FS + + + Sbjct: 71 NVLIIFAIMFMN-----GSEYSNDSYLWTVGDGITS---LVCTS--ILFSLITTILDMSW 120 Query: 127 KG----------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G +NV+ IG L T + P E+ ILL+S+IGAI + Sbjct: 121 YGIIWTTRKNQIIEQDLISNVQQIGIHLSTDFYLPFELISIILLVSLIGAITM 173 >gi|108802695|ref|YP_636352.1| NADH dehydrogenase subunit 6 [Eucalyptus globulus subsp. globulus] gi|122219159|sp|Q49KU5|NU6C_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|60460861|gb|AAX21081.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus globulus subsp. globulus] Length = 176 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + NPIYS FSL V + ++L + FVA L++YVGA+ + LF +M Sbjct: 20 ILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILILFAVM 79 Query: 76 ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 + D+++ S + ++ L + + ++ G Sbjct: 80 FMNGSEYYKDLNLWTVGDGITSLVCTSILVSLMTTILDTSWYGIIWTTKSNQIIEQDLIG 139 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N+ + IG L T + P E+ ILL+++IGAI Sbjct: 140 NS-QQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|126165905|ref|YP_209564.2| NADH dehydrogenase subunit 6 [Huperzia lucidula] Length = 196 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 22/162 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV N +YS F L + V + L++LL A+FVA + +++YVG + V +F +M Sbjct: 20 ILGSLGVVLFTNIVYSAFLLGWVPVCISFLYILLNADFVAAVQILIYVGTINVLIVFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------VFSAEGELSRLVFKG- 128 +++ +P+ R FL + +G L +C S F+ + + ++S +V Sbjct: 80 LIN------KPQYFR-FLKYWTVGD-GTALALCTSPFLSIIAAILSTPWSKISLIVLSNK 131 Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +NV+ IG T P E+ ILL++ +GAI + Sbjct: 132 IVEEPLTDNVQRIGFHSLTDSPLPFELLSIILLVAPVGAITM 173 >gi|309322278|ref|YP_003934356.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa] gi|197131416|gb|ACH47226.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa] gi|300069371|gb|ADJ66491.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa] Length = 178 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 20/149 (13%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F+ + F+L FVA L++YVGA+ V LF +M ++ Sbjct: 31 NPIFSAFSLGLVFICISFFFILANCHFVAAAQLLIYVGAINVLILFAVMFMNSSEYAKSK 90 Query: 87 RKKRGFLGSFFIGILAAELIVCA-------SNFMVFSAEG-----ELSRLVFKG--NNVE 132 LG+ A +VC SN + S G ++++ K +N + Sbjct: 91 DLHLRTLGA------GATSLVCTTLFLSIISNILDTSWYGIIWTTRANQILEKDLISNSQ 144 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 145 QIGIRLSTDFYLPFELISIILLVALIGAI 173 >gi|289474476|gb|ADC97855.1| NADH dehydrogenase subunit 6 [Paragorgia arborea] Length = 154 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181 ++M+GAI+L + H RQD+ Q+ Sbjct: 115 VAMVGAILLAKQPNTPSLYNPHVGTHSRQDLFLQIS 150 >gi|75286704|sp|Q5SCZ0|NU6C_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|50660038|gb|AAT80760.1| NADH-plastoquinone oxidoreductase subunit 6 [Huperzia lucidula] Length = 199 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 22/162 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV N +YS F L + V + L++LL A+FVA + +++YVG + V +F +M Sbjct: 23 ILGSLGVVLFTNIVYSAFLLGWVPVCISFLYILLNADFVAAVQILIYVGTINVLIVFAVM 82 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------VFSAEGELSRLVFKG- 128 +++ +P+ R FL + +G L +C S F+ + + ++S +V Sbjct: 83 LIN------KPQYFR-FLKYWTVGD-GTALALCTSPFLSIIAAILSTPWSKISLIVLSNK 134 Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +NV+ IG T P E+ ILL++ +GAI + Sbjct: 135 IVEEPLTDNVQRIGFHSLTDSPLPFELLSIILLVAPVGAITM 176 >gi|289474455|gb|ADC97841.1| NADH dehydrogenase subunit 6 [Paragorgia aotearoa] Length = 154 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181 ++M+GAI+L + H RQD+ Q+ Sbjct: 115 VAMVGAILLAKQPNTPPLYHPHVGTHSRQDLFLQIS 150 >gi|289474461|gb|ADC97845.1| NADH dehydrogenase subunit 6 [Paragorgia regalis] gi|289474485|gb|ADC97861.1| NADH dehydrogenase subunit 6 [Paragorgia yutlinux] Length = 154 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 16/156 (10%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVLMLR---------HRRDIKRQDISKQLE 181 ++M+GAI+L + H RQD+ Q+ Sbjct: 115 VAMVGAILLAKQPNTPPLYNPHVGTHSRQDLFLQIS 150 >gi|162009884|gb|ABX82066.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162009893|gb|ABX82074.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162009902|gb|ABX82082.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162009911|gb|ABX82090.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162009920|gb|ABX82098.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162145625|gb|ABX82846.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162145635|gb|ABX82855.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] Length = 162 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 19/143 (13%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84 ++P S+ + F+N++ + ++LG EF+A++ L+VYVGA+ V FLF+IM+L+I Sbjct: 21 TKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIP--AT 78 Query: 85 EPRK-KRGF--LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKV 137 E R RG+ LG F + + F + + G R + G ++ N+G Sbjct: 79 ELRAYSRGWSTLGIF--------VFIINGVFQITPSMGP--RGIITGLPGAESITNLGHA 128 Query: 138 LYTQYAYPLEISGFILLLSMIGA 160 LY +A L ++ +L +++ GA Sbjct: 129 LYLYFADLLILNSLVLTVALFGA 151 >gi|11467872|ref|NP_050923.1| NADH dehydrogenase subunit 6 [Nephroselmis olivacea] gi|14194995|sp|Q9TKV3|NU6C_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|5880801|gb|AAD54894.1|AF137379_117 subunit 6 of NADH-plastoquinoneoxidoreductase [Nephroselmis olivacea] Length = 169 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR- 87 +Y+ F L F AG+++LL A+FVA ++VYVGA+ V LF IM+ ++ + A PR Sbjct: 30 VYAAFLLGAVFFCLAGIYVLLHADFVAAAQVLVYVGAINVLILFAIML--VNPQDAPPRA 87 Query: 88 --KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145 G IG+L + M+ + + N++ +G L++ Sbjct: 88 LDSPPLIPGIACIGLLGVLV------QMISTTSWLTPPWTPEPNSLPVLGGHLFSDCLLA 141 Query: 146 LEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 E+ +LL++++GAIV L R ++R Sbjct: 142 FEVMSLVLLVALVGAIV--LARREPVERSS 169 >gi|323148957|ref|YP_004222511.1| NADH-plastoquinone oxidoreductase subunit 6 [Smilax china] gi|308742648|gb|ADO33499.1| NADH-plastoquinone oxidoreductase subunit 6 [Smilax china] Length = 176 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 L + G+ + +VC S ++FS + + G + Sbjct: 85 EYSNDSRLWTIGDGVTS---LVCTS--ILFSLITTIPDTSWYGILWTTKSNQILEQDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 NV+ IG L T + P E+ ILL+S+IGAI + Sbjct: 140 NVQQIGIHLSTDFYLPFELISIILLVSLIGAITM 173 >gi|332885912|gb|EGK06156.1| hypothetical protein HMPREF9456_00030 [Dysgonomonas mossii DSM 22836] Length = 167 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 17/174 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + FY+ + + + S+ + VT + I S L+F + AGL+LLL F+ + + VY Sbjct: 3 EQIIFYILATIIVFSTIMAVTTQKIIRSATFLLFVLLGTAGLYLLLDYHFLMAVQIAVYG 62 Query: 64 GAVIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 G V+V F+F I++ +D++ +P G FI LAA + ++F + Sbjct: 63 GGVMVLFIFAILLTHEPGVDVKFEKP-------GRIFISALAALAGLAICGHIIFYNVNK 115 Query: 121 LSRLVFKGN-NVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + N+++IG + QY P E +LL +IG I M+ +R Sbjct: 116 FYTYITQQELNMQDIGMGMMGTDKYQYLLPFEAISILLLACIIGGI--MIARKR 167 >gi|156959936|gb|ABU98425.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 7/137 (5%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + S++ + ++ N+ IG LYT Y + I+ +LL++MIGAI+L + Sbjct: 54 FYSLLTNSSKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 169 RDIKRQDISKQLESNPD 185 + L S D Sbjct: 114 SPFLYNSHGESLRSKQD 130 >gi|313156921|gb|EFR56359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alistipes sp. HGB5] Length = 169 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 9/172 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++ + F + + +S+ L VT + + + L+F AG++ L F+ + L+ Sbjct: 3 ITLELIVFTVLAVFTAVSALLAVTTKRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y G + V ++F I++ + +E K G+ FF+G+ A L + ++ + Sbjct: 63 IYAGGITVLYVFSILLTSSQGDKSEDLK--GY--KFFVGLAATLLSLGVCLYVTLGHDFR 118 Query: 121 LSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168 S V +V+ IG L + +Y Y P E+ +LL ++G I L+ R R Sbjct: 119 PSHFVHGELHVQTIGHALMSSGKYGYVLPFEVISILLLACIVGGI-LIARKR 169 >gi|162148246|ref|YP_001602707.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter diazotrophicus PAl 5] gi|161786823|emb|CAP56406.1| putative NADH-quinone oxidoreductase chain J [Gluconacetobacter diazotrophicus PAl 5] Length = 168 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + ++++F+ VT N ++++ L+ + AG+F LGA F AM+ +++Y GA++ Sbjct: 8 FALSALVVVLAAFMTVTRANAVHALLYLVVLLLALAGIFFQLGAPFAAMLEVIIYAGAIM 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 V F+F++MML++ + R++R ++ +IG L ++ + Sbjct: 68 VLFVFVVMMLNLG--ATDQRRERAWIVPRVWIG--PVLLAGVLLAALLRALAVTAPAGGG 123 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 +G VLY YA +E++ F+LL + A Sbjct: 124 GPIGPAQVGLVLYGPYALTVELASFLLLAGLASA 157 >gi|18860372|ref|NP_569688.1| NADH dehydrogenase subunit 6 [Psilotum nudum] gi|75248907|sp|Q8WHX6|NU6C_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|18389525|dbj|BAB84277.1| NADH dehydrogenase ND6 subunit [Psilotum nudum] Length = 188 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 26/170 (15%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+ + + + S FSL F++ + L+L+L A+FVA +++YVGA+ V +F +M+ Sbjct: 26 VILLNDIVQSAFSLGLTFISISLLYLVLNADFVAAAQVLIYVGAINVLIVFSVML----- 80 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFM-------------VFSAEGELSRLVFK- 127 + +P K S G LIVC S F+ ++S + S +F+ Sbjct: 81 -IQKPHKNEDLSTSRNTGN-NITLIVCTSLFLFLVSIILDTSWSQIYSIKK--STKIFEP 136 Query: 128 --GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +NV+ IG L T++ P E+ +LL++++GAI M R R + D Sbjct: 137 ILKSNVQLIGSQLLTEFLLPFELLSVLLLVALVGAIT-MSRQSRMFEMPD 185 >gi|224538207|ref|ZP_03678746.1| hypothetical protein BACCELL_03098 [Bacteroides cellulosilyticus DSM 14838] gi|224520175|gb|EEF89280.1| hypothetical protein BACCELL_03098 [Bacteroides cellulosilyticus DSM 14838] Length = 170 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 13/170 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + + S L VT R+ + S L+F AG++ LLG F+ + ++ Sbjct: 3 ITLETVVFYFLAVFISVCSILTVTTRHMVRSATYLLFTLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSA 117 VY G ++V ++F I++ + + K+ LG+ G + I F+V Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDRTTKLKRSKLLAGLGATVGGAIIVVFITLKHKFLV--- 119 Query: 118 EGELSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVL 163 + LV N++ IG + + Y P E +LL ++G +V+ Sbjct: 120 ---TTDLVPLEINIKTIGHSMLSSDKFGYLLPFEAVSILLLACIVGGLVI 166 >gi|160886843|ref|ZP_02067846.1| hypothetical protein BACOVA_04857 [Bacteroides ovatus ATCC 8483] gi|299148401|ref|ZP_07041463.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 3_1_23] gi|156107254|gb|EDO08999.1| hypothetical protein BACOVA_04857 [Bacteroides ovatus ATCC 8483] gi|298513162|gb|EFI37049.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 3_1_23] Length = 170 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 13/160 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS---NFMVFSAE 118 Y G ++V ++F I++ + + AE K+ L I +I+ + NFM Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKAKRSKLLAGLITMIAGLAIILTITLKHNFM----- 118 Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILL 154 + + L N+ IG L + +Y Y P E +LL Sbjct: 119 -QTANLAPHEINIHAIGNALLSSDKYGYILPFEAVSILLL 157 >gi|77019999|ref|YP_337883.1| NADH dehydrogenase subunit 6 [Aspergillus niger] gi|75993219|gb|ABA33724.1| NADH dehydrogenase subunit 6 [Aspergillus niger] Length = 217 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 37/180 (20%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT-LVVYVGAVIVFFLFIIMMLDIDIE-- 82 RNP+ S LI FV+ AG+ +L+G + + + + ++VYVGA FL I+M++++ I Sbjct: 38 RNPLVSAVFLIGVFVDIAGVLILVGDDDIGVSSYILVYVGAAATLFLLILMLINMRISEL 97 Query: 83 VAEPRKKRGF-----------LGSFFIGILAAELIVCASN---------------FMVFS 116 V+E + + +G IV +S+ + Sbjct: 98 VSETNRDTPWAVITVSLFYFIMGQVTPSNFTDNTIVTSSSTSFSEVYDLQVDDEILNIVD 157 Query: 117 AEGELSRLVFKGNNV--------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + E + K + IG +YT Y+ L IS ILL+ M+GAIV+ ++ + Sbjct: 158 LQQETASASSKSGDTSLVELPHLSGIGNSMYTNYSLWLIISSVILLVGMVGAIVITIKQK 217 >gi|170784789|ref|YP_001718705.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum] gi|170784796|ref|YP_001718712.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum] gi|221272393|sp|A9QC80|NU6C_TRACE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|156598841|gb|ABU85673.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum] gi|157267537|gb|ABV26530.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum] gi|157267544|gb|ABV26537.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum] Length = 176 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID- 80 VV + NPIYS FSL V + L++L + F+A L++YVGA+ V +F +M L+ Sbjct: 26 VVLLPNPIYSAFSLGLVLVCISLLYILSNSHFLAAAQLLIYVGAINVLIIFAVMFLNGSE 85 Query: 81 -IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGELSRLVFKG--NNVENIG 135 + P + S L A LI + + + ++++ + NN + IG Sbjct: 86 YYKDLNPWTVGDGVTSVVCTSLFASLITTIPDTSWYGIIWTTKSNQIIEQDLINNSQEIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAI 161 L T + P E+ ILL+++IGAI Sbjct: 146 IHLSTDFLIPFELISIILLVALIGAI 171 >gi|333031509|ref|ZP_08459570.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides coprosuis DSM 18011] gi|332742106|gb|EGJ72588.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides coprosuis DSM 18011] Length = 171 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 33/182 (18%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + ++ S L VT + S L+F + AG++ L F+ + L+VY Sbjct: 6 EAVVFAVLALIIVVFSVLTVTTSRILRSATYLLFVLLGTAGIYFQLNYSFLGAVQLMVYA 65 Query: 64 GAVIVFFLFIIMMLDI----DIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSA 117 G + V ++F I++ D P+ K F++G + A +VCA F++ Sbjct: 66 GGITVLYVFAILLTSSKGMNDRAEKLPKSK------FWVGAITAVVSFLVCA--FLIL-- 115 Query: 118 EGELSRLVFKG---NNVE----NIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLR 166 + VFK N+VE IGK + QY P E+ G +LL +IGAIV+ R Sbjct: 116 -----KNVFKEAMFNDVEVGMNQIGKTMLGTEKFQYLIPFELMGVLLLACVIGAIVIA-R 169 Query: 167 HR 168 R Sbjct: 170 KR 171 >gi|182412572|ref|YP_001817638.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus terrae PB90-1] gi|177839786|gb|ACB74038.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus terrae PB90-1] Length = 211 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 1/150 (0%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + + V+ + I +V L+ V AGL+ L + F+A++ +++YVGAV V +F +M+ + Sbjct: 26 ALIAVSSQRIIRAVTGLMICCVGLAGLYYFLNSPFLALMEILIYVGAVCVTIVFGVMLAE 85 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 D V + R F + +++A + + + + +V IG L Sbjct: 86 PDWPV-NLKHPRAFHKTLLAALVSAAIGGGLAGLALHAPWPAQPVQTVNDGSVAAIGTSL 144 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 T Y++ E+ +LL++++GA+V+ R Sbjct: 145 LTTYSFVFELISLVLLVAILGALVIARAGR 174 >gi|209542886|ref|YP_002275115.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter diazotrophicus PAl 5] gi|209530563|gb|ACI50500.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter diazotrophicus PAl 5] Length = 165 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + ++++F+ VT N ++++ L+ + AG+F LGA F AM+ +++Y GA++ Sbjct: 5 FALSALVVVLAAFMTVTRANAVHALLYLVVLLLALAGIFFQLGAPFAAMLEVIIYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 V F+F++MML++ + R++R ++ +IG L ++ + Sbjct: 65 VLFVFVVMMLNLG--ATDQRRERAWIVPRVWIG--PVLLAGVLLAALLRALAVTAPAGGG 120 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 +G VLY YA +E++ F+LL + A Sbjct: 121 GPIGPAQVGLVLYGPYALTVELASFLLLAGLASA 154 >gi|124004524|ref|ZP_01689369.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Microscilla marina ATCC 23134] gi|123990096|gb|EAY29610.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Microscilla marina ATCC 23134] Length = 193 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 24/184 (13%) Query: 11 FSFMAII--SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 F F+A+I S+ +++ R +Y+ FSL+ + + L++ GA+F+A+ +++YVG ++V Sbjct: 8 FGFVALIGVSTLVLLGTRKVLYAAFSLLLILLGISALYVFAGADFLAVTQIIIYVGGILV 67 Query: 69 FFLFIIMML-----DIDIEVAEP------------RKKRGFLGSFFIGILAAELIVCA-- 109 LF IM+ ++ I + P K R L +G+ ++V A Sbjct: 68 LLLFGIMLTNRPPQNLSIRFSNPFQQDETSDVQPLTKTRNNLAGIVLGLGLLAILVFAIH 127 Query: 110 -SNF--MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N M + + ++ V K + V+ +G L TQY E+ +L+++++GA+++ R Sbjct: 128 KANLGQMPWIKQAVQNQQVIKQSTVQGLGIQLMTQYVLVFEVIAVLLMVALLGAVLIAGR 187 Query: 167 HRRD 170 + Sbjct: 188 TEKK 191 >gi|301353376|ref|YP_003795634.1| NADH-plastoquinone oxidoreductase subunit 6 [Pteridium aquilinum subsp. aquilinum] gi|301016294|gb|ADK47581.1| NADH-plastoquinone oxidoreductase subunit 6 [Pteridium aquilinum subsp. aquilinum] Length = 195 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 17/175 (9%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+ N +S FSL F + + +L A+ VA +VYVGA+ V + +M+ D Sbjct: 26 AVSFANLTHSAFSLGLVFTRISLSYFVLNADSVAAAQSLVYVGAINVSIVSAVMVTDQPT 85 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---------FSAEGELSRLVFKGNNVE 132 + G+ FI + A ++ M+ F + E+ G+NV+ Sbjct: 86 RSNSTSRNIGY----FIALGACAILFSVLTNMIHNTKWFDVSFITQSEILAANTSGSNVQ 141 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187 +G L T++ P E++ +LL++++GAI RD ++ + DNS Sbjct: 142 QLGYKLLTEFLVPFELASILLLVALVGAI----NPARDEDTNATDEKASLSRDNS 192 >gi|156959919|gb|ABU98412.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959924|gb|ABU98416.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959932|gb|ABU98422.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959940|gb|ABU98428.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959944|gb|ABU98431.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959952|gb|ABU98437.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959956|gb|ABU98440.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959964|gb|ABU98446.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959968|gb|ABU98449.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959980|gb|ABU98458.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959988|gb|ABU98464.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959992|gb|ABU98467.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960000|gb|ABU98473.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960004|gb|ABU98476.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960016|gb|ABU98485.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960024|gb|ABU98491.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960028|gb|ABU98494.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960032|gb|ABU98497.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960036|gb|ABU98500.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L + Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 169 RDIKRQDISKQLESNPD 185 + L S D Sbjct: 114 SPFLYNSHGESLRSKQD 130 >gi|156122204|gb|ABU50164.1| NADH dehydrogenase subunit 6 [Cordyceps bassiana] Length = 212 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 30/193 (15%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +A++ V+ +NPI S+ LI F + + +L G F+ L+VY+GAV Sbjct: 17 FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFMVFSA 117 + FLFI+M+++I + + FIGIL L + +N+++ S Sbjct: 77 SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136 Query: 118 EG----------ELSRLVFKGNN-----------VENIGKVLYTQYAYPLEISGFILLLS 156 + S ++F +N + IG +LYT Y L +S ILLL+ Sbjct: 137 NYNNILPTVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196 Query: 157 MIGAIVLMLRHRR 169 M GAI++ ++ Sbjct: 197 MTGAIIITIKQES 209 >gi|15088716|ref|NP_150125.1| NADH dehydrogenase subunit 6 [Schizophyllum commune] gi|15077923|gb|AAK83409.1|AF402141_13 NADH dehydrogenase subunit 6 [Schizophyllum commune] Length = 215 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 SS L +T +NP+ SV LI FV AAG + +G F+ + +++YVGA+ V FLF+IMM+ Sbjct: 16 SSILTITFKNPVISVIFLILTFVQAAGYLIFIGINFIGISYIIIYVGAIAVLFLFVIMMI 75 Query: 78 DIDI-EVAEPRKK 89 ++++ E+ E + Sbjct: 76 NLNLSEILETGNE 88 >gi|115531974|ref|YP_784130.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium x hortorum] gi|122164265|sp|Q06FQ1|NU6C_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|112382128|gb|ABI17321.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium x hortorum] Length = 176 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 8/147 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML---- 77 VV + NPIYS FSL F F+ + ++L + FVA L++YVGA+ V LF +M + Sbjct: 26 VVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSE 85 Query: 78 ---DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 D + F+ ++ L + + ++ F N+ + + Sbjct: 86 YYKDFHLWTLGDGLTSLICTILFLSLITTILDTSWYGILWTTKSNQIIEKDFISNS-QQL 144 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAI 161 G +L T + P E+ ILL++++GAI Sbjct: 145 GILLSTDFFLPFELMSIILLVALLGAI 171 >gi|197131420|gb|ACH47228.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium cotyledonis] Length = 176 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + NPIYS FSL F F+ + ++L + FVA L++YVGA+ V +F +M Sbjct: 20 ILGSLGVVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVM 79 Query: 76 MLDIDIEVAE-PRKKRG-FLGSFFIGILAAELIVCASNFMVFS--AEGELSRLVFKG--N 129 ++ E P G L S IL LI N + ++++ K + Sbjct: 80 FMNGSEYYKESPLWTVGDGLTSLISTILFFSLITTILNTSWYGIIWTTRSNQIIEKDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N + +G L T + P E+ ILL++++GAI Sbjct: 140 NSQQLGIHLSTDFFLPFELISIILLVALLGAI 171 >gi|323168551|gb|EFZ54231.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella sonnei 53G] gi|332766099|gb|EGJ96309.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Shigella flexneri 2930-71] Length = 166 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI-DI 81 +T NP++++ LI + + +G+F LGA F + ++VY GA++V F+F++MML++ Sbjct: 2 ITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGS 61 Query: 82 EVAEPRK 88 E+ + R+ Sbjct: 62 EIEQERQ 68 >gi|296936724|gb|ADH94396.1| NADH-plastoquinone oxidoreductase subunit 6 [Syzygium cumini] Length = 176 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + NPIYS FSL V + ++L + FVA L++YVGA+ + LF +M Sbjct: 20 ILGSLGVVLLINPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILILFAVM 79 Query: 76 ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 + D+++ S + ++ L + + ++ G Sbjct: 80 FMNGSEYYKDLNLWTVGDGITSLVCTSILVSLMTTILDTSWYGIIWTTKSNQIIEQDLIG 139 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N+ + IG L T + P E+ ILL+++IGAI Sbjct: 140 NS-QQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|156960008|gb|ABU98479.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L + Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 169 RDIKRQDISKQLESNPD 185 + L S D Sbjct: 114 SPFLYNSHGESLRSKQD 130 >gi|289474473|gb|ADC97853.1| NADH dehydrogenase subunit 6 [Paragorgia arborea] Length = 154 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 7/129 (5%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +LL Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVLL 114 Query: 155 LSMIGAIVL 163 ++M+GAI+L Sbjct: 115 VAMVGAILL 123 >gi|156959928|gb|ABU98419.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L + Sbjct: 54 FYSLLTNSXKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 169 RDIKRQDISKQLESNPD 185 + L S D Sbjct: 114 SPFLYNSHGESLRSKQD 130 >gi|325610517|gb|ADZ36464.1| NADH dehydrogenase subunit 6 [Gordonia lasianthus] Length = 176 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 22/163 (13%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F+ I++S V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F Sbjct: 17 FVLILASLGVILFPNPIYSAFSLGLVFVCISFFYILSNSYFVAAAQLLIYVGAINVLIIF 76 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--K 127 +M ++ K L + GI + +VC S F+ + +++ K Sbjct: 77 AVMFMN-----GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATK 128 Query: 128 GN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N N + IG L T + P E+ ILL+++IGAI Sbjct: 129 SNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|290489850|gb|ADD31332.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ilex cornuta] Length = 177 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVF--KGN---------NVE 132 K L + G+ + IVC S F M + +++ K N N + Sbjct: 86 YYKDFHLWTVGDGVTS---IVCTSLFVSLMTTIPDTSWHGIIWTTKSNQIIEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|197935768|ref|YP_002213611.1| NADH dehydrogenase subunit 6 [Cordyceps brongniartii] gi|156122225|gb|ABU50184.1| NADH dehydrogenase subunit 6 [Cordyceps brongniartii] Length = 212 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 30/193 (15%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +A++ V+ +NPI S+ LI F + + +L G F+ L+VY+GAV Sbjct: 17 FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFMVFSA 117 + FLFI+M+++I + + FIGIL L + +N+++ S Sbjct: 77 SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136 Query: 118 EG----------ELSRLVFKGNN-----------VENIGKVLYTQYAYPLEISGFILLLS 156 + S ++F +N + IG +LYT Y L +S ILLL+ Sbjct: 137 NYNNILPIVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196 Query: 157 MIGAIVLMLRHRR 169 M GAI++ ++ Sbjct: 197 MTGAIIITIKQDS 209 >gi|187373198|ref|YP_001876510.1| NADH dehydrogenase subunit 6 [Beauveria bassiana] gi|164598942|gb|ABY61760.1| NADH dehydrogenase subunit 6 [Beauveria bassiana] Length = 212 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 30/193 (15%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +A++ V+ +NPI S+ LI F + + +L G F+ L+VY+GAV Sbjct: 17 FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFMVFSA 117 + FLFI+M+++I + + FIGIL L + +N+++ S Sbjct: 77 SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136 Query: 118 EG----------ELSRLVFKGNN-----------VENIGKVLYTQYAYPLEISGFILLLS 156 + S ++F +N + IG +LYT Y L +S ILLL+ Sbjct: 137 NYNNILPTVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196 Query: 157 MIGAIVLMLRHRR 169 M GAI++ ++ Sbjct: 197 MTGAIIITIKQDS 209 >gi|156959960|gb|ABU98443.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L + Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGXHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 169 RDIKRQDISKQLESNPD 185 + L S D Sbjct: 114 SPFLYNSHGESLRSKQD 130 >gi|323698258|ref|ZP_08110170.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio sp. ND132] gi|323458190|gb|EGB14055.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio desulfuricans ND132] Length = 174 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 3/174 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+ + F +++ + + + L V+ + + ++ LI + AG++LLL F+A + L++ Sbjct: 3 VLAKIAFGVYTLVILGGAVLAVSSSSLVRALIGLITTLIGVAGMYLLLATPFMAFMQLLI 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V F +M+ + E K + + G+ A ++V + Sbjct: 63 YVGAVSVLIFFAVMLTRAEQGGDEADKAP--MKRYVFGLAATMAPAAILGWLVLTRPAP- 119 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 S V ++ +G+ L Y P E+ IL+++M GA++L+ R D Sbjct: 120 SVAVPVEVPIKQLGEGLLGSYFLPFELISVILMVAMSGAVLLVWEKRGQRNGGD 173 >gi|200004082|ref|YP_002221532.1| NADH dehydrogenase subunit 6 [Hydra magnipapillata] gi|194578744|tpe|CAP49321.1| TPA: NADH dehydrogenase subunit 6 [Hydra vulgaris] Length = 185 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 2/177 (1%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S + I+ + + NPI+SVF L+ F + L + L EF++++ +++YVGA+++ FL Sbjct: 9 SILIILGCLMCINSLNPIHSVFWLVTVFFFSFALLINLNLEFLSLLLIIIYVGAIVILFL 68 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-LSRLVFKGNN 130 F+IMMLDI I L I+ F+ + + L+ + N Sbjct: 69 FVIMMLDIIQIKKNSNINNIIPIILIILSLLTIKIINKDIFLSYHLNNDFLNFNLINHYN 128 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI-SKQLESNPDN 186 N+ Y++Y+ + IL + MIG IVL + + + K+Q I + L +N N Sbjct: 129 FHNLALFFYSKYSINFILISIILSIGMIGVIVLTITYNSNSKKQKIFIQHLRNNSWN 185 >gi|116617161|ref|YP_817535.1| NADH-plastoquinone oxidoreductase subunit 6 [Coffea arabica] gi|122153672|sp|A0A388|NU6C_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|116242217|gb|ABJ89732.1| NADH-plastoquinone oxidoreductase subunit 6 [Coffea arabica] Length = 176 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL F V + ++LL + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGFVLVCISLFYILLNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132 K L + G+ + +VC F+ + + ++S K N N + Sbjct: 86 YYKDFHLWTIGDGVTS---VVCTGLFISLITTIPDMSWYGIIWTTKSNQILEQDLITNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 143 QIGVHLSTDFFLPFELVSIILLVALIGAI 171 >gi|114107099|ref|YP_740255.1| NADH-plastoquinone oxidoreductase subunit 6 [Liriodendron tulipifera] gi|122221283|sp|Q0G9G6|NU6C_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|113201047|gb|ABI32562.1| NADH-plastoquinone oxidoreductase subunit 6 [Liriodendron tulipifera] Length = 176 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 26/152 (17%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + + FVA L++YVGAV V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 K +L + G+ + +VC S ++FS +S + G + Sbjct: 85 EYSKDLYLWTVGDGVTS---LVCTS--ILFSLITTISDTSWYGIIWTTRSNQIIEQDLTS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 NV+ IG L T + P E+ ILL+++IGAI Sbjct: 140 NVQQIGIHLSTDFYLPFELISIILLVALIGAI 171 >gi|156959948|gb|ABU98434.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 7/115 (6%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILL 108 >gi|75755712|ref|YP_319816.1| NADH dehydrogenase subunit 6 [Acorus calamus] gi|161622362|ref|YP_001586234.1| NADH dehydrogenase subunit 6 [Acorus americanus] gi|122217394|sp|Q3V4Y1|NU6C_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272304|sp|A9LYF3|NU6C_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|74381762|emb|CAI53847.1| NADH dehydrogenase ND6 subunit [Acorus calamus] gi|156573645|gb|ABU85156.1| NADH-plastoquinone oxidoreductase subunit 6 [Acorus americanus] gi|160369905|gb|ABX38796.1| NADH-plastoquinone oxidoreductase subunit 6 [Acorus americanus] Length = 177 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 26/158 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGAV V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAVNVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 +L + G+ + +VC S ++FS + + G + Sbjct: 85 DYSNDFYLWTVGDGVTS---LVCTS--ILFSLITTILDTSWYGIIWNTGSNQIVEQDLTS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 NV+ IG L T + P E+ ILL+++IGAI + ++ Sbjct: 140 NVQQIGIHLSTDFYLPFELVSIILLVALIGAITMARQY 177 >gi|305666191|ref|YP_003862478.1| NADH dehydrogenase I subunit J [Maribacter sp. HTCC2170] gi|88707689|gb|EAQ99930.1| NADH dehydrogenase I, chain J [Maribacter sp. HTCC2170] Length = 174 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+ + + I+ + VT R + SV L+F AG++ L+ F+A I L VY Sbjct: 1 MERIIFYVLAIIMIVFAIASVTSRKMLRSVIYLLFVLCGIAGIYFLIDYNFLAAIQLTVY 60 Query: 63 VGAVIVFFLFIIMM---LDIDIEVAEPRKK 89 G +IV +F +++ +++++E+A+ K+ Sbjct: 61 AGGIIVLIIFSVLLVHHIEMELEIAKTSKQ 90 >gi|156598281|gb|ABU85402.1| NADH-plastoquinone oxidoreductase subunit 6 [Ginkgo biloba] Length = 176 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 12/149 (8%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N IYS SL V + L++LL A+FVA +++YVGA+ V +F +M+++ P Sbjct: 31 NIIYSALSLGSVLVCISLLYILLNADFVAAAQILIYVGAINVLIVFAVMLMN---NQKYP 87 Query: 87 RKKRGF-LGSFFIGILAAEL------IVCASNFMVFSAEGELSRLVFKG--NNVENIGKV 137 + +G ++ L I+ +++ V S EL++ + + NN++ IG Sbjct: 88 NSAPPWTVGDGITSVVCMSLFCSLITIILNTSWSVISLTTELNQFLEQDLTNNIQRIGVH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL++++GAI + R Sbjct: 148 LSTDFILPFELISIILLITLVGAITMARR 176 >gi|81176304|ref|YP_398381.1| NADH dehydrogenase subunit 6 [Lactuca sativa] gi|122212008|sp|Q332S4|NU6C_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|78675222|dbj|BAE47648.1| NAD(P)H-quinone oxidoreductase chain 6 [Lactuca sativa] gi|88657035|gb|ABD47285.1| NADH-plastoquinone oxidoreductase subunit 6 [Lactuca sativa] Length = 176 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVFVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFIN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132 K L + GI + +VC S F+ + + + S K N N + Sbjct: 86 YSKDFHLWTVGDGITS---VVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E ILL+++IGAI Sbjct: 143 QIGIHLSTDFFLPFEFISIILLVALIGAI 171 >gi|156598391|gb|ABU85455.1| NADH-plastoquinone oxidoreductase subunit 6 [Musa acuminata] Length = 176 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 26/158 (16%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + NPIYS FSL V + ++ + FVA L++YVGAV V +F +M ++ Sbjct: 26 VVLLTNPIYSAFSLGLVLVCISLFYIPSNSFFVAAAQLLIYVGAVNVLIIFAVMFMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------------- 128 + + G+ + +VC S ++FS + + G Sbjct: 83 --GSEYSNDSYFWTIGDGVTS---LVCTS--ILFSLITTIPDTSWYGIIWTTRSNQIIEQ 135 Query: 129 ---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +NV+ IG L T + P E+ ILL+S+IGAI + Sbjct: 136 DLISNVQQIGIHLSTDFYLPFELISIILLVSLIGAITM 173 >gi|11467094|ref|NP_042569.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|128811|sp|P10329|NU6M_CHLRE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|12507|emb|CAA38644.1| mitochondrial NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|563697|gb|AAB93445.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] Length = 162 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 76/142 (53%), Gaps = 19/142 (13%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84 ++P S+ + F+N++ + ++LG EF+A++ L+VYVGA+ V FLF+IM+L+I Sbjct: 21 TKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIP--AT 78 Query: 85 EPRK-KRGF--LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKV 137 E R RG+ LG F + + F + + G R + G ++ N+G Sbjct: 79 ELRAYSRGWSTLGIF--------VFIINGVFQITPSMGP--RGIITGLPGAESITNLGHA 128 Query: 138 LYTQYAYPLEISGFILLLSMIG 159 LY +A L ++ +L +++ G Sbjct: 129 LYLYFADLLILNSLVLTVALFG 150 >gi|325610641|gb|ADZ36569.1| NADH dehydrogenase subunit 6 [Stewartia crassifolia] Length = 176 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 26 VILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN------- 129 K L + GI + +VC S F+ + +++ K N Sbjct: 83 --GSEYSKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATKSNQILEQDL 137 Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N + IG L T + P E+ ILL+++IGAI Sbjct: 138 ISNSQKIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|15147304|ref|NP_150308.1| NADH dehydrogenase subunit 6 [Spizellomyces punctatus] gi|15100073|gb|AAK84237.1|AF404303_11 NADH dehydrogenase subunit 6 [Spizellomyces punctatus] Length = 260 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 48/74 (64%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 +YL ++S+ +V + NPI+ + LI F++ + L ++L F+ + ++VYVGA++ Sbjct: 8 YYLIGITGLLSALVVASSLNPIHRIAFLILVFLSGSFLMIILDFYFLGLTYIIVYVGAIM 67 Query: 68 VFFLFIIMMLDIDI 81 + FLF+IMM+ I + Sbjct: 68 ILFLFVIMMVQIHL 81 >gi|13518395|ref|NP_084754.1| NADH dehydrogenase subunit 6 [Oenothera elata subsp. hookeri] gi|169142762|ref|YP_001687189.1| NADH dehydrogenase subunit 6 [Oenothera argillicola] gi|169142912|ref|YP_001687335.1| NADH dehydrogenase subunit 6 [Oenothera glazioviana] gi|169142997|ref|YP_001687419.1| NADH dehydrogenase subunit 6 [Oenothera biennis] gi|169143083|ref|YP_001687503.1| NADH dehydrogenase subunit 6 [Oenothera parviflora] gi|22256938|sp|Q9MTH9|NU6C_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272335|sp|B0Z4S8|NU6C_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272336|sp|B0Z512|NU6C_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272337|sp|B0Z596|NU6C_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272338|sp|B0Z5I0|NU6C_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|6723812|emb|CAB67223.1| NADH dehydrogenase subunit 6 [Oenothera elata subsp. hookeri] gi|159793000|gb|ABW98756.1| NADH dehydrogenase subunit 6 [Oenothera argillicola] gi|159793170|gb|ABW98924.1| NADH dehydrogenase subunit 6 [Oenothera biennis] gi|159895524|gb|ABX10089.1| NADH dehydrogenase subunit 6 [Oenothera glazioviana] gi|159895609|gb|ABX10173.1| NADH dehydrogenase subunit 6 [Oenothera parviflora] Length = 176 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 8/153 (5%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ VV + NPI+S FSL V + F L + FVA L++YVGA+ V LF +M Sbjct: 20 IVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVM 79 Query: 76 ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 + D+ + S FI ++ L + + ++ G Sbjct: 80 FMNGSEYSKDLTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIG 139 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N+ + IG L T + P E+ ILL+S+IGAI Sbjct: 140 NS-QQIGIHLSTDFFLPFELISIILLVSLIGAI 171 >gi|269794082|ref|YP_003313537.1| NADH dehydrogenase subunit J [Sanguibacter keddieii DSM 10542] gi|269096267|gb|ACZ20703.1| NADH dehydrogenase subunit J [Sanguibacter keddieii DSM 10542] Length = 290 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 50/77 (64%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F+ + + ++++ ++ R +++ ++F V A +++ L A F+ ++ +VVY Sbjct: 6 EAVLFWCLAPLMVVAALGLLFARKAVHATLCVVFVMVCLAVMYVALEAPFLGIVQIVVYT 65 Query: 64 GAVIVFFLFIIMMLDID 80 GAV++ FLF+IM++ +D Sbjct: 66 GAVMMLFLFVIMLVGVD 82 >gi|332971770|gb|EGK10718.1| NADH-quinone oxidoreductase subunit J [Desmospora sp. 8437] Length = 168 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 5/140 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + AI + ++ ++ V SL F ++ AG+++LL AEF+A+ +++Y G+V Sbjct: 11 FFVLAVCAIGGAVFMLNFTRVVHMVLSLAFTLLSIAGIYVLLNAEFLAVAQVLIYTGSVS 70 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + LF IM+ + R F +G L LI +++ E S K Sbjct: 71 ILMLFGIMLTRHRDQEETVRPWHSFFSFVGVGALFGILI-----HTIYNTPFEESTASVK 125 Query: 128 GNNVENIGKVLYTQYAYPLE 147 V +G++++ QY P E Sbjct: 126 EFTVSRLGEIVFKQYVIPFE 145 >gi|139389151|ref|YP_001123868.1| NADH dehydrogenase subunit 6 [Nasturtium officinale] gi|221272333|sp|A4QLY8|NU6C_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134287074|dbj|BAF50693.1| NADH dehydrogenase ND6 [Nasturtium officinale] Length = 176 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 26/151 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130 L + GI + +VC + ++FS + + G +N Sbjct: 90 SN----LWTVGNGITS---LVCTT--ILFSLMSTILDTSWYGVIWTTRLNQILEQDLISN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|317153006|ref|YP_004121054.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Desulfovibrio aespoeensis Aspo-2] gi|316943257|gb|ADU62308.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio aespoeensis Aspo-2] Length = 169 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 11/171 (6%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+ + F +++ + I S V+ + + ++ LI V AG++LLL + F+A + L++ Sbjct: 3 VLAKVAFGIYTAVIIGGSVFAVSSTSLVRALVGLITTLVGVAGMYLLLASPFMAFMQLLI 62 Query: 62 YVGAVIVFFLFIIMMLDI----DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 YVGAV V F +M+ D P K ++ G+ A ++V + Sbjct: 63 YVGAVSVLIFFAVMLTRAESGGDESAPAPMK------TYVFGLAATIAPAAVLGWLVMTR 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + S + +++ +G+ L Y P E+ IL+++M GA++L R Sbjct: 117 PVQ-SIAIPTEVDIKQLGEGLLGTYFLPFELISVILMVAMAGAVLLTWEKR 166 >gi|227497689|ref|ZP_03927898.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226832866|gb|EEH65249.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 286 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 86/173 (49%), Gaps = 10/173 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + ++ ++T + + + ++I + A L++ A F+ + +VVY Sbjct: 22 ETILFAVVALVTVVCGIGLLTAKRAVSAAVNMIAIMIALAVLYIANEAPFLGITQIVVYT 81 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVCASNFMVFSAEG 119 GAV+ LF++M++ + + EP G + +I G+ A L+ F Sbjct: 82 GAVMTLVLFVVMLVGVGGD--EPVGSAGSPATKWIIALFGLGLAVLVAGVVWRTQFPDAA 139 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 L + +G ++ +L+ Q+ +E++G +L+++ GA L L HR+ I+ Sbjct: 140 GLDQ--GQGAAPADLATLLFGQHVVAMELTGLLLIVAATGA--LTLTHRQRIR 188 >gi|183217792|ref|YP_001837412.1| NADH dehydrogenase subunit 6 [Guizotia abyssinica] gi|221272325|sp|B2LMP5|NU6C_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|179366307|gb|ACB86578.1| NADH-plastoquinone oxidoreductase subunit 6 [Guizotia abyssinica] Length = 176 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVFVCISLFYILANSHFVAAAQLLIYVGAINVLIIFAVMFIN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132 K L + G+ + +VC S F+ + + + S K N N + Sbjct: 86 YSKDFHLWTVGDGVTS---VVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E ILL+++IGAI Sbjct: 143 QIGIHLSTDFFLPFEFISIILLVALIGAI 171 >gi|50346838|ref|YP_053209.1| NADH dehydrogenase subunit 6 [Nymphaea alba] gi|75275853|sp|Q6EVZ7|NU6C_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|50250383|emb|CAF28649.1| NADH dehydrogenase ND6 subunit [Nymphaea alba] Length = 177 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 26/168 (15%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ VV + NPIYS FSL V + ++ + FVA L++YVGA+ V LF +M Sbjct: 20 IVGGLGVVLLTNPIYSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLILFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------- 128 ++ + + + +G L VC S F FS + + G Sbjct: 80 FMN-------GSEYYNYFHFWTVGDGFTSL-VCTSIF--FSLIATIPNTSWYGIIWTTRS 129 Query: 129 ---------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +NV+ IG L T + P E+ ILL+S++GAI + R Sbjct: 130 NQIIEQDLTSNVQQIGIHLSTDFYLPFELISIILLVSLVGAIAMARRE 177 >gi|139389857|ref|YP_001123517.1| NADH dehydrogenase subunit 6 [Crucihimalaya wallichii] gi|221272318|sp|A4QKY7|NU6C_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286719|dbj|BAF50342.1| NADH dehydrogenase ND6 [Crucihimalaya wallichii] Length = 176 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 16/146 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGI--LAAELIVC--ASNFMVFSAEG-----ELSRLVFKG--NNVENIG 135 L + GI L I+C S + S G L++++ + +N + IG Sbjct: 90 FN----LWTVGNGITSLVCTTILCLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAI 161 L T + P E+ ILL+++IGAI Sbjct: 146 IHLSTDFFLPFELISIILLVALIGAI 171 >gi|269955286|ref|YP_003325075.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Xylanimonas cellulosilytica DSM 15894] gi|269303967|gb|ACZ29517.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xylanimonas cellulosilytica DSM 15894] Length = 301 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 94/190 (49%), Gaps = 7/190 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F + + + +I++ ++ + +++ ++F ++ A L++ A F+ ++ +VVY Sbjct: 7 EAALFGVLAPLMVIAALGLLFAKRAVHAAMCVVFVMISLAILYVANEAPFLGIVQVVVYT 66 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV++ FLF++M++ +D + RG ++G F L L+ + + A G Sbjct: 67 GAVMMLFLFVLMLVGVDAADSLTETIRGQRWIGVLFGAGLLVVLLTVLARTDLPPAIG-- 124 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISK 178 L N + +L+ Y +E+ G +L+ + + +VL R R R +R ++ Sbjct: 125 LDLANAQTNPTGLAAILFGDYVIGMEVIGVLLVTAALAGLVLTHRRRLGPRRSQRTMAAE 184 Query: 179 QLESNPDNSI 188 ++ PD + Sbjct: 185 RVAGLPDGQV 194 >gi|226227800|ref|YP_002761906.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27] gi|226090991|dbj|BAH39436.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27] Length = 169 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 48/77 (62%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F +A++S+ ++ ++ P+ +LI + ++ ++ LLG F+A +++YVGAV+VF Sbjct: 6 FGLLALVSAASMLVLKEPMRVALALITSMMSLGAIYGLLGVHFIAAFQVLIYVGAVMVFM 65 Query: 71 LFIIMMLDIDIEVAEPR 87 +++IM+L + PR Sbjct: 66 VYVIMLLQVRESPNNPR 82 >gi|50510208|dbj|BAD31376.1| chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica Group] Length = 172 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 24/151 (15%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NP +S FSL V + L + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPTFSAFSLGLVLVCIS----LFNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 81 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-----------RLVFKG--NNVE 132 K + F + IG L+ F + + + S ++V +G NNV+ Sbjct: 82 WSKDKNF---WTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQ 138 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 IG L T + P E+ ILL+S+IGAI + Sbjct: 139 QIGIHLATDFYLPFELISIILLVSLIGAITM 169 >gi|157325586|ref|YP_001468364.1| NADH dehydrogenase subunit 6 [Ipomoea purpurea] gi|221272327|sp|A7Y3L7|NU6C_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|157056814|gb|ABV02404.1| NADH-plastoquinone oxidoreductase subunit 6 [Ipomoea purpurea] Length = 176 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 8/155 (5%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV NPIYS FSL V + ++L + FVA L++YVGA+ V LF +M Sbjct: 20 ILGSIGVVLFPNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLILFAVM 79 Query: 76 ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 L D + S FI +++ L + + ++ Sbjct: 80 FLNGSEYSNDFPLWTLGDGITSQVCISLFISLISTILDTSWYGIIWTTRSNQIIEQDLIS 139 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 N+ + IG L T + P E+ ILL+++IGAIV+ Sbjct: 140 NS-QQIGIHLSTDFFLPFELISIILLVALIGAIVI 173 >gi|283953817|ref|ZP_06371348.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni 414] gi|283794858|gb|EFC33596.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni 414] Length = 172 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + V +N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + F +M D Sbjct: 20 IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79 Query: 81 IEVAEPRK-KRGFLGSFFIGILAAELIVC---ASNFMVFSAEGELSRLVFKGNNVENIGK 136 E E K K+ F G + IL+A L++ + S + L+ L N + + Sbjct: 80 KEFKEQLKAKKSFFG---LVILSAVLLLAMFIGFKYQSVSTDLALNDLALFDFN-KQLAL 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++++Y E +LL++++ AI L H+ K + Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIT--LTHKELTKEKQ 172 >gi|260171807|ref|ZP_05758219.1| NADH dehydrogenase I, chain J [Bacteroides sp. D2] gi|315920119|ref|ZP_07916359.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693994|gb|EFS30829.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 170 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 13/160 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS---NFMVFSAE 118 Y G ++V ++F I++ + + AE K+ L I +I+ + NFM Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKVKRSKLLAGLITMIAGLAIILTITLKHNFM----- 118 Query: 119 GELSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILL 154 + + L + ++ IG L + +Y Y P E +LL Sbjct: 119 -QTANLAPQEIDIHAIGNALLSSDKYGYILPFEAVSILLL 157 >gi|309322124|ref|YP_003933940.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum] gi|197131408|gb|ACH47222.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum] gi|300069217|gb|ADJ66339.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum] Length = 176 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N IYS F+L F+ + ++L + FVA L++YVGA+ + LF +M L+ +E Sbjct: 31 NLIYSAFALGLVFICISLFYILANSHFVAAAQLLIYVGAINILILFAVMFLN----GSES 86 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVFKG-----------NNVE 132 K F G+ G A +VC + F+ + + R+++ +N + Sbjct: 87 SKDSRF-GTVGDG---ATSLVCTTLFLSLISNILDTSWYRIIWTTRATQIIEKDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 143 QIGIRLSTDFFLPFELISIILLVALIGAI 171 >gi|154508647|ref|ZP_02044289.1| hypothetical protein ACTODO_01148 [Actinomyces odontolyticus ATCC 17982] gi|153798281|gb|EDN80701.1| hypothetical protein ACTODO_01148 [Actinomyces odontolyticus ATCC 17982] Length = 325 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 72/140 (51%), Gaps = 1/140 (0%) Query: 30 YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +SV ++ + A L++ A F+ + +VVY GA+++ FLF+IM++ I R+ Sbjct: 41 HSVICMVGVMLGLAVLYIANSAPFLGVAQIVVYTGAIMMLFLFVIMLIGIGTSDDYARQS 100 Query: 90 RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL-VFKGNNVENIGKVLYTQYAYPLEI 148 RG + + +G L +IV + A + + + + ++ L+ ++ +E+ Sbjct: 101 RGAIVAAVLGGLGLIVIVTTAILKAVPAPHKPVEVDPYSNQPITDLAITLFQEHWLSMEL 160 Query: 149 SGFILLLSMIGAIVLMLRHR 168 +G +L+ + +GA++L R Sbjct: 161 AGGLLITAAVGAMLLTHSDR 180 >gi|293191759|ref|ZP_06609283.1| NADH dehydrogenase I, J subunit [Actinomyces odontolyticus F0309] gi|292820452|gb|EFF79435.1| NADH dehydrogenase I, J subunit [Actinomyces odontolyticus F0309] Length = 325 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 72/140 (51%), Gaps = 1/140 (0%) Query: 30 YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +SV ++ + A L++ A F+ + +VVY GA+++ FLF+IM++ I R+ Sbjct: 41 HSVICMVGVMLGLAVLYIANSAPFLGVAQIVVYTGAIMMLFLFVIMLIGIGTSDDYARQS 100 Query: 90 RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL-VFKGNNVENIGKVLYTQYAYPLEI 148 RG + + +G L +IV + A + + + + ++ L+ ++ +E+ Sbjct: 101 RGAIVAAVLGGLGLIVIVTTAILKAVPAPHKPVEVDPYSNQPITDLAITLFQEHWLSMEL 160 Query: 149 SGFILLLSMIGAIVLMLRHR 168 +G +L+ + +GA++L R Sbjct: 161 AGGLLITAAVGAMLLTHSDR 180 >gi|242910154|ref|YP_002970698.1| NADH-plastoquinone oxidoreductase subunit 6 [Alsophila spinulosa] gi|218454823|gb|ACK77160.1| NADH-plastoquinone oxidoreductase subunit 6 [Alsophila spinulosa] Length = 195 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ S VV++ N ++S F L F + +L+L A+ +A L+VYVGA+ V + + Sbjct: 20 LLGSLGVVSLANVVHSAFLLGLVFTRISLSYLVLNADSLAAAQLLVYVGAINVLIVSAVT 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE----GELSRLVFKG--N 129 + D E P + +FI + A + S M++S E LV K N Sbjct: 80 VTD---EPTSPNSTTNWSIGYFITLGACTGLFSLSTIMIYSTRWSIVNESKILVEKTSEN 136 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 NV+ +G L T + P E+ +LL++++GAI L Sbjct: 137 NVQGLGYKLLTTFLVPFELLSILLLVALVGAITL 170 >gi|257387969|ref|YP_003177742.1| NADH dehydrogenase subunit J [Halomicrobium mukohataei DSM 12286] gi|257170276|gb|ACV48035.1| NADH dehydrogenase subunit J [Halomicrobium mukohataei DSM 12286] Length = 90 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 50/82 (60%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F LF+ + I SS+ VV VR+ +S L A ++ A +L+L AEFVA + ++VYV Sbjct: 6 ETIAFVLFAVVTIASSWGVVLVRDVWHSALLLGVALLSVAVHYLMLRAEFVAAMQILVYV 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAE 85 G V++ F +M+ D V E Sbjct: 66 GGVLILITFAVMLTRKDESVVE 87 >gi|124302959|ref|YP_001023754.1| NADH dehydrogenase subunit 6 [Angiopteris evecta] gi|221272308|sp|A2T386|NU6C_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|110628357|gb|ABG79653.1| NADH-plastoquinone oxidoreductase subunit 6 [Angiopteris evecta] Length = 197 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 24/177 (13%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 N +YS L F+ + L+L+L A+FVA +++YVGAV V +F +M++D Sbjct: 30 TNIVYSALLLGLVFICISLLYLVLNADFVAAAQVLIYVGAVNVLTVFAVMLID------- 82 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFS------------AEGELSRLVFKG--NNV 131 + K L SF L VC S F++ + + ++ V +G +V Sbjct: 83 -KPKNITLFSFSNVGDNITLGVCTSLFILLTIMIPDASWSEIYMTKQSTKFVEQGLTTDV 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188 + IG L T++ P E+ +LL+++IGAI + R R ++ D +K ES D S+ Sbjct: 142 QLIGSQLLTKFLLPFELLSILLLVALIGAITIA-RQERIVEIDD-NKASESKEDLSL 196 >gi|94502543|ref|YP_588170.1| NADH dehydrogenase subunit 6 [Helianthus annuus] gi|281190757|ref|YP_003330996.1| NADH dehydrogenase subunit 6 [Parthenium argentatum] gi|122179550|sp|Q1KXQ6|NU6C_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|88656947|gb|ABD47198.1| NADH-plastoquinone oxidoreductase subunit 6 [Helianthus annuus] gi|269924870|gb|ACZ52743.1| NADH dehydrogenase subunit 6 [Parthenium argentatum] Length = 176 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVFVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFIN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132 K L + G+ + +VC S F+ + + + S K N N + Sbjct: 86 YSKDFHLWTVGDGVTS---VVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E ILL+++IGAI Sbjct: 143 QIGIHLSTDFFIPFEFISIILLVALIGAI 171 >gi|139389697|ref|YP_001123253.1| NADH dehydrogenase ND6 [Arabis hirsuta] gi|221272309|sp|A4QK73|NU6C_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286452|dbj|BAF50078.1| NADH dehydrogenase ND6 [Arabis hirsuta] Length = 176 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 26/156 (16%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D Sbjct: 26 VVLLPNPIFSAFSLGFVLVCISLLYILANSHFVAAAQLLIYVGAINVLIIFAVMFMN-DS 84 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------------- 128 E L + GI + +VC + ++FS + + G Sbjct: 85 EYFTDFN----LWTVGDGITS---LVCTT--LLFSLISTILDTSWYGVIWTTRLNQILEQ 135 Query: 129 ---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +N + IG L T + P E+ ILL+++IGAI Sbjct: 136 DLISNSQQIGSHLSTDFFLPFELISIILLVALIGAI 171 >gi|325610548|gb|ADZ36490.1| NADH dehydrogenase subunit 6 [Stewartia rubiginosa] gi|325610574|gb|ADZ36513.1| NADH dehydrogenase subunit 6 [Stewartia monadelpha] gi|325610594|gb|ADZ36530.1| NADH dehydrogenase subunit 6 [Stewartia sinensis] Length = 176 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 26 VILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN------- 129 K L + GI + +VC S F+ + +++ K N Sbjct: 83 --GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATKSNQILEQDL 137 Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N + IG L T + P E+ ILL+++IGAI Sbjct: 138 ISNSQKIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|114107186|ref|YP_740170.1| NADH-plastoquinone oxidoreductase subunit 6 [Daucus carota] gi|122221298|sp|Q0G9Q9|NU6C_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|113200961|gb|ABI32477.1| NADH-plastoquinone oxidoreductase subunit 6 [Daucus carota] Length = 176 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 22/151 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132 K L + G+ + +VC S F+ + + + S K N N + Sbjct: 86 YYKDFHLWTVGDGVTS---MVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 IG L T + P E+ ILL+S+IGAI + Sbjct: 143 QIGIHLSTDFFLPFELISIILLVSLIGAITV 173 >gi|325610566|gb|ADZ36506.1| NADH dehydrogenase subunit 6 [Stewartia serrata] Length = 176 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 26 VILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN------- 129 K L + GI + +VC S F+ + +++ K N Sbjct: 83 --GSEYYKDFHLWTVGDGITS---MVCTSIFVSLITTILDTSWYGIIWATKSNHILEQDL 137 Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N + IG L T + P E+ ILL+++IGAI Sbjct: 138 ISNSQKIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|153012162|ref|YP_001381677.1| NADH-plastoquinone oxidoreductase subunit 6 [Medicago truncatula] Length = 176 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 25/176 (14%) Query: 4 QSLFFYLFSFMA---IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 ++L +L F+ I+ S VV + NPI+S FSL V + L++L + FVA L+ Sbjct: 5 ETLHDFLLVFLGSGIILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILSNSHFVAASQLL 64 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSA 117 +YVGA+ + +F +M ++ + + L + GI LIVC S F + + Sbjct: 65 IYVGAINILIIFAVMFMN-----SSEYYQDFNLWTVGDGI---TLIVCTSIFVSLITIIS 116 Query: 118 EGELSRLVF--KGNNV---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + +++ + N + + IG L T + P E+ ILL+++IGAIV Sbjct: 117 DTSWYGIIWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIV 172 >gi|156959976|gb|ABU98455.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959984|gb|ABU98461.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 7/137 (5%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG + + +I ++VYVGA+ + FLF+IM+ + +P K S F+ + +I Sbjct: 1 LGLDXIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L + Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 169 RDIKRQDISKQLESNPD 185 + L S D Sbjct: 114 SPFLYNSHGESLRSKQD 130 >gi|290489858|gb|ADD31336.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Nerium oleander] Length = 176 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++LL + FVA L++YVGAV V LF +M + Sbjct: 31 NPIYSAFSLGLVLVCISLFYILLSSYFVAAAQLLIYVGAVNVLILFAVMFMS-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGEL----SRLVFKGN---NVE 132 K L + G+ + +VC S F+ S G + S V + + N + Sbjct: 86 YYKDSRLWTVGDGVTS---MVCTSLFISLITTIPDTSWYGIIWTTRSNQVLEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|218295769|ref|ZP_03496565.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermus aquaticus Y51MC23] gi|218243928|gb|EED10455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermus aquaticus Y51MC23] Length = 177 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 37/52 (71%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 RN I++ +LI F+ AG+++ L A F+ I ++VY GA++V FLF+IM+L Sbjct: 23 RNAIHAALALILNFLVLAGVYVALDARFLGFIQIIVYAGAIVVLFLFVIMLL 74 >gi|290489844|gb|ADD31329.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Aucuba japonica] Length = 175 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 22/160 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ + VV + NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M Sbjct: 20 ILGALGVVLLPNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---- 128 ++ K L + G+ + +VC S F M + +++ Sbjct: 80 FMN-----GSEYYKDFHLWTIGDGVTS---MVCTSIFVSLMTTIPDTSWYGIIWTTRSNQ 131 Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +N + IG L T + P E+ ILL+++IGAI Sbjct: 132 IVEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|261187255|ref|XP_002620077.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis SLH14081] gi|239586520|gb|EEQ69163.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis SLH14081] gi|239606194|gb|EEQ83181.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis ER-3] Length = 202 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 7/73 (9%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LFS IIS +NP+ S+F LI F++ + +G EF+ + L+VYVGAV + Sbjct: 26 LFSLYTIIS-------KNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAVSIL 78 Query: 70 FLFIIMMLDIDIE 82 FLFI+M+++I I Sbjct: 79 FLFILMLINIRIS 91 >gi|84494921|ref|ZP_00994040.1| NADH dehydrogenase subunit J [Janibacter sp. HTCC2649] gi|84384414|gb|EAQ00294.1| NADH dehydrogenase subunit J [Janibacter sp. HTCC2649] Length = 269 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 95/198 (47%), Gaps = 15/198 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +A++ + ++ R +++ + + +L GA+F+ +I + VY Sbjct: 6 EAILFWVLAPLAVVGALGLIFARKAVHAALGMALTMIILGVFYLAQGADFLGVIQIFVYT 65 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-E 120 GAV++ FLF++M++ +D + E K + + L A L+ + A + Sbjct: 66 GAVMMLFLFVVMLVGVDSSDSIVETLKGQRAAATVLTLGLGALLMGAIGRITIGDAPANK 125 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 L + NV + ++++ +Y + E + +L+ + + A+VL R R L Sbjct: 126 LDAINTDKGNVSGVAELIFGRYVWVFEATSALLITAALAAMVLAHRER-----------L 174 Query: 181 ESNPDN-SIVMVKVKSGK 197 S PD + +++SG+ Sbjct: 175 GSRPDQRAWSERRIRSGE 192 >gi|326402931|ref|YP_004283012.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum AIU301] gi|325049792|dbj|BAJ80130.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum AIU301] Length = 166 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 6/168 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + +A++++ +++T + ++ + L + + A +F +LGA F A + +++Y GA++ Sbjct: 5 FVISAIIAVVATAMMITRPSAVHGLLYLTVSLLAVALVFFVLGAPFAAALEVIIYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML+I E A + + ++G L++ V + G L Sbjct: 65 VLFVFVIMMLNIG-EAAARLESSWLHPATWVGPSILALLLAIELGAV-AVSGGLPHPATS 122 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + +G L Y +E++ F+LL ++ A L R I D Sbjct: 123 VISAHAVGVALVGPYMLAVELASFLLLAGLVAAFHL----GRSIMGTD 166 >gi|314965049|gb|EFT09148.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL082PA2] Length = 284 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 103/208 (49%), Gaps = 12/208 (5%) Query: 1 MVMQSLF-FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 MV S + F+L + + ++++ ++V + P++S SL + A + A F+ ++ + Sbjct: 14 MVTASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQI 73 Query: 60 VVYVGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +VY GA+++ FLF++M++ +D + E K L LI+ N + Sbjct: 74 IVYTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALALVVLLILAVGNAVTTDV 133 Query: 118 EGELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RR 169 G + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 134 IGTDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKK 193 Query: 170 DIKRQDISKQLESNPDN-SIVMVKVKSG 196 +R+ ++ ++ + ++ S V+ SG Sbjct: 194 KSQRERVTDRMAAYAEHGSHPGVRPNSG 221 >gi|139388149|ref|YP_001123340.1| NADH dehydrogenase ND6 [Barbarea verna] gi|221272310|sp|A4QKG0|NU6C_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286540|dbj|BAF50165.1| NADH dehydrogenase ND6 [Barbarea verna] Length = 176 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 26/151 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130 L + GI + +VC + ++FS + + G +N Sbjct: 90 LN----LWTVGNGITS---LVCTT--ILFSLMSTILDTSWYGVIWTTRLNQILEQDLISN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|81238365|gb|ABB60024.1| NADH dehydrogenase subunit 6 [Calyptrophora japonica] Length = 151 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 16/130 (12%) Query: 40 VNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 VNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ Sbjct: 1 VNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLP 54 Query: 100 I------LAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + L L+ + ++ S ++ N+ IG LYT Y + ++ +L Sbjct: 55 VGLSVIFLFYSLLTNSPKYI----SSTHSPVIGSRTNIGAIGSHLYTTYYELVLVASLVL 110 Query: 154 LLSMIGAIVL 163 L++M+GAI+L Sbjct: 111 LVAMVGAILL 120 >gi|108796692|ref|YP_636526.1| NADH dehydrogenase subunit 6 [Zygnema circumcarinatum] gi|122211732|sp|Q32RK0|NU6C_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|61393676|gb|AAX45818.1| subunit 6 of NADH-plastoquinone oxidoreductase [Zygnema circumcarinatum] Length = 181 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +L F + F ++ + VV + IYS L F F+ A L+LLL A+F+A +++YV Sbjct: 9 NTLLFVVLEFAILVGALGVVLLSRVIYSALLLGFVFICVALLYLLLNADFLAAAQVLIYV 68 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97 GAV V +F IM++ +V K G + S F Sbjct: 69 GAVNVLIVFAIMLVSTPDDVKNKPKTTGEIISAF 102 >gi|156598197|gb|ABU85362.1| NADH-plastoquinone oxidoreductase subunit 6 [Elaeis oleifera] Length = 176 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 26/158 (16%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + NPI+S FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 26 VVLLTNPIFSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------------- 128 + + G+ + +VC S ++FS + + G Sbjct: 83 --GSEYSNDSYFWTIGDGVTS---LVCTS--ILFSLITIIPDTSWYGIFWTTRSSQIMEQ 135 Query: 129 ---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +N++ IG L T + P E+ ILL+S+IGAI + Sbjct: 136 DLISNIQQIGIHLSTDFYLPFELISIILLVSLIGAITM 173 >gi|156959972|gb|ABU98452.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959996|gb|ABU98470.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960012|gb|ABU98482.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 141 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 7/137 (5%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLPV-GLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + S + + ++ N+ IG LYT Y + I+ +L ++MIGAI+L + Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLXVAMIGAILLAKQPS 113 Query: 169 RDIKRQDISKQLESNPD 185 + L S D Sbjct: 114 SPFLYNSHGESLRSKQD 130 >gi|81238355|gb|ABB60019.1| NADH dehydrogenase subunit 6 [Narella alaskensis] gi|81238357|gb|ABB60020.1| NADH dehydrogenase subunit 6 [Narella arbuscula] gi|81238359|gb|ABB60021.1| NADH dehydrogenase subunit 6 [Narella cristata] gi|81238361|gb|ABB60022.1| NADH dehydrogenase subunit 6 [Narella bayeri] gi|81238363|gb|ABB60023.1| NADH dehydrogenase subunit 6 [Narella abyssalis] gi|81238367|gb|ABB60025.1| NADH dehydrogenase subunit 6 [Primnoa pacifica var. willeyi] Length = 151 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 16/130 (12%) Query: 40 VNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 VNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P K S F+ Sbjct: 1 VNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNKVDSQDHSHFLP 54 Query: 100 I------LAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + L L+ + ++ S ++ N+ IG LYT Y + ++ +L Sbjct: 55 VGLSVIFLFYSLLTNSPKYI----SSTHSPVIGSRTNIGAIGSHLYTTYYELVLVASLVL 110 Query: 154 LLSMIGAIVL 163 L++M+GAI+L Sbjct: 111 LVAMVGAILL 120 >gi|11466304|ref|NP_051132.1| NADH dehydrogenase subunit 6 [Cafeteria roenbergensis] gi|6180086|gb|AAF05783.1|AF193903_6 NADH dehydrogenase subunit 6 [Cafeteria roenbergensis] Length = 250 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 20/173 (11%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N I+S+ L+ F+ + L EF+ +I L++Y+GA++V FLF++MMLDI + Sbjct: 26 NTIHSLLLLLELFIIGSLLLFFFKVEFLGLIFLMIYLGAILVLFLFVVMMLDIKTTAVQN 85 Query: 87 RKKRGF----LGSF-----FIGILAAELIVCASNFMVFSAEG----------ELSRLVFK 127 F LG F F+ + ++I ++ + F + +L+ Sbjct: 86 DDLNQFIFKGLGLFFFIPVFVWWIFGDVIFLSAMWQSFVKTAVHWSFSLSILDFFQLINF 145 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 +N+E +G ++ + G IL ++MIGAIV+ + + + Q I L Sbjct: 146 SSNLEVVGWYIFDFQPILFLLCGVILYIAMIGAIVVSVDSQMN-SNQKIQNAL 197 >gi|52220864|ref|YP_087019.1| NADH dehydrogenase subunit 6 [Panax ginseng] gi|75254100|sp|Q68RV3|NU6C_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|51235367|gb|AAT98563.1| NADH dehydrogenasesubunit 6 [Panax ginseng] Length = 176 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V LF +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132 K L + G+ + +VC S F+ + + + S K N N + Sbjct: 86 YYKDFHLWTIGDGVTS---MVCTSIFVSLITTIPDTSWYGIIWTTKSNQIIEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|17063207|gb|AAL32512.1| NADH dehydrogenase subunit 6 [Daucus carota] Length = 121 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 1/75 (1%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +A++S+ +VV +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FL Sbjct: 7 SSLALVSALMVVRAKNPVHSVSFSIPVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVSFL 66 Query: 72 FIIMMLDIDI-EVAE 85 F+ MM I I E+ E Sbjct: 67 FVGMMFHIQIAEIHE 81 >gi|7525088|ref|NP_051112.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] gi|2499298|sp|Q95695|NU6C_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|1619279|emb|CAA67670.1| ndhG [Arabidopsis thaliana] gi|5881749|dbj|BAA84440.1| NADH dehydrogenase ND6 [Arabidopsis thaliana] Length = 176 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 8/142 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----ELSRLVFKG--NNVENIGKVLY 139 + L + S + S G +L++++ + +N + IG L Sbjct: 90 FNLWTIGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAI 161 T + P E+ ILL+++IGAI Sbjct: 150 TDFFLPFELISIILLVALIGAI 171 >gi|242090093|ref|XP_002440879.1| hypothetical protein SORBIDRAFT_09g012611 [Sorghum bicolor] gi|241946164|gb|EES19309.1| hypothetical protein SORBIDRAFT_09g012611 [Sorghum bicolor] Length = 67 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 A++S +VV +NP++SV I F + +GL +LLG +F MI VV++GA+ V FL Sbjct: 9 ALVSGLMVVRAKNPVHSVLFPILVFYDTSGLLILLGLDFSTMIFPVVHIGAIAVSFL 65 >gi|295136962|ref|YP_003587796.1| NADH dehydrogenase subunit 6 [Lathyrus sativus] gi|293338684|gb|ADE43656.1| NADH dehydrogenase subunit 6 [Lathyrus sativus] Length = 176 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 22/152 (14%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + L++L + FVA L++YVGA+ + +F +M ++ + Sbjct: 30 TNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLIYVGAINILIIFAVMFMN-----SS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVF--KGNNV--------- 131 + L + GI LIVC S F + ++ +++ + N + Sbjct: 85 EYYQDLNLWTVGDGI---TLIVCTSIFVSLITIISDTSWYGIIWTTRPNQIIEQDLISTS 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + IG L T + P E+ ILL+S+IGAIV+ Sbjct: 142 QQIGIHLSTDFFLPFELISIILLVSLIGAIVV 173 >gi|289474479|gb|ADC97857.1| NADH dehydrogenase subunit 6 [Paragorgia kaupeka] Length = 154 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 7/108 (6%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM+ + +P + Sbjct: 2 LVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIML------IQQPNQVDYQDH 55 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142 S F+ + +I + + S + + ++ N+ IG LYT Y Sbjct: 56 SHFLPV-GLSVIFLFYSLLTNSPKYIGNPVIGSRTNIGAIGSHLYTTY 102 >gi|115391956|ref|YP_778544.1| NADH dehydrogenase subunit 6 [Jasminum nudiflorum] gi|122164926|sp|Q06R77|NU6C_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|110456277|gb|ABG74682.1| NADH degydrogenase subunit 6 [Jasminum nudiflorum] Length = 176 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 26/164 (15%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + NPIYS FSL + ++LL + FVA L++YVGA+ V +F +M Sbjct: 20 ILGSLGVVFLPNPIYSAFSLGLVLFCISLFYILLNSYFVAAAQLLIYVGAINVLIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--------------MVFSAEGEL 121 ++ K +L + G+ + +VC S F ++++ + Sbjct: 80 FMN-----GSEYYKDFYLWTVGDGVTS---MVCTSLFISLITTIPDTSWYGIIWTTKS-- 129 Query: 122 SRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++++ K +N + IG L T + P E+ ILL+++IGAI + Sbjct: 130 NQIIEKDLISNSQQIGIHLVTDFFLPFELISIILLVALIGAIAI 173 >gi|295137003|ref|YP_003587550.1| NADH dehydrogenase subunit 6 [Pisum sativum] gi|293338575|gb|ADE43548.1| NADH dehydrogenase subunit 6 [Pisum sativum] Length = 176 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 22/152 (14%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + L++L + FVA L++YVGA+ + +F +M ++ Sbjct: 30 TNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLIYVGAINILIIFAVMFMN------- 82 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVF--KGNNV--------- 131 + L + +G LIVC S F + ++ +++ + N + Sbjct: 83 SSEYYQDLNLWTVGD-GMTLIVCTSIFVSLITIISDTSWYGIIWTTRPNQIIEQDLISTS 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + IG L T + P E+ ILL+S+IGAIV+ Sbjct: 142 QQIGIHLSTDFFLPFELISIILLVSLIGAIVV 173 >gi|139387308|ref|YP_001123428.1| NADH dehydrogenase subunit 6 [Capsella bursa-pastoris] gi|221272313|sp|A4QKP8|NU6C_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286629|dbj|BAF50253.1| NADH dehydrogenase ND6 [Capsella bursa-pastoris] Length = 176 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 8/142 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----ELSRLVFKG--NNVENIGKVLY 139 + L + S + S G +L++++ + +N + IG L Sbjct: 90 FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAI 161 T + P E+ ILL+++IGAI Sbjct: 150 TDFFLPFELISIILLVALIGAI 171 >gi|55980062|ref|YP_143359.1| NADH-quinone oxidoreductase subunit 10 [Thermus thermophilus HB8] gi|2499299|sp|Q56225|NQO10_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 10; AltName: Full=NADH dehydrogenase I chain 10; AltName: Full=NDH-1 subunit 10 gi|1279870|gb|AAA97947.1| NADH dehydrogenase I, subunit NQO10 [Thermus thermophilus] gi|55771475|dbj|BAD69916.1| NADH-quinone oxidoreductase chain 10 [Thermus thermophilus HB8] Length = 176 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 37/52 (71%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 RN I++ +LI F+ AG+++ L A F+ I ++VY GA++V FLF+IM+L Sbjct: 23 RNAIHAALALILNFLVLAGVYVALDARFLGFIQVIVYAGAIVVLFLFVIMLL 74 >gi|148260116|ref|YP_001234243.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Acidiphilium cryptum JF-5] gi|146401797|gb|ABQ30324.1| NADH dehydrogenase subunit J [Acidiphilium cryptum JF-5] Length = 166 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 6/168 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + +A++++ +++T + ++ + L + + A +F +LGA F A + +++Y GA++ Sbjct: 5 FVISAIIAVVATAMMITRPSAVHGLLYLTVSLLAVALVFFVLGAPFAAALEVIIYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML+I E A + + ++G L++ V + G L Sbjct: 65 VLFVFVIMMLNIG-EAAARLESSWLHPATWVGPSILALLLAIELGAV-AVSGGLRHPATS 122 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + +G L Y +E++ F+LL ++ A L R I D Sbjct: 123 VISAHAVGVALVGPYMLAVELASFLLLAGLVAAFHL----GRSIMGTD 166 >gi|212693816|ref|ZP_03301944.1| hypothetical protein BACDOR_03337 [Bacteroides dorei DSM 17855] gi|212663705|gb|EEB24279.1| hypothetical protein BACDOR_03337 [Bacteroides dorei DSM 17855] Length = 167 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 9/172 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q + F + + I S L VT + + L+F AG++ L F+ + L+ Sbjct: 1 MTLQLIVFIVLALFIAICSVLAVTTSRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y G + V ++F I++ + AE R K G + + I +A L +C F++ E Sbjct: 61 IYAGGITVLYVFSILLTSSQGDKAE-RLKNGKMVAGAISTIAG-LAICL--FVMLKNEFL 116 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168 S V +V IG L QY P E+ +LL ++G I L+ R R Sbjct: 117 PSHFVHGELDVRTIGHALMGMEKYQYILPFEVISVLLLACIVGGI-LIARKR 167 >gi|114329710|ref|YP_740530.1| NADH-plastoquinone oxidoreductase subunit 6 [Citrus sinensis] gi|122166138|sp|Q09MC3|NU6C_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|113952676|gb|ABI49074.1| NADH-plastoquinone oxidoreductase subunit 6 [Citrus sinensis] Length = 178 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 24/152 (15%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGAV V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 K L + IG L VC S F FS + + G + Sbjct: 85 DYSKDFQLNLWTIGDGLTSL-VCTSIF--FSLITTILDTSWYGIIWTTRANQIIEQDLIS 141 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N + IG L T + P E+ ILL+++IGAI Sbjct: 142 NSQQIGIHLSTDFFLPFELVSIILLVALIGAI 173 >gi|121720667|ref|YP_001001587.1| NADH-plastoquinone oxidoreductase subunit 6 [Nuphar advena] gi|221272334|sp|A1XG08|NU6C_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|84682258|gb|ABC60512.1| NADH-plastoquinone oxidoreductase subunit 6 [Nuphar advena] Length = 177 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 30/170 (17%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ VV + NPIYS FS V + ++ + FVA L++YVGA+ V LF +M Sbjct: 20 IVGGLGVVLLTNPIYSAFSSGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLILFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAEL--IVCASNFMVFSAEGELSRLVFKG----- 128 ++ + SF + +VC S F FS + + G Sbjct: 80 FMN----------GSEYYNSFHFWTIGDGFTSVVCTSIF--FSLIATIPNTSWYGIIWTT 127 Query: 129 -----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +NV+ IG L T + P E+ ILL+S++GAI + R Sbjct: 128 RSNQIIEQDLTSNVQQIGIHLSTDFYLPFELISIILLVSLVGAIAMARRE 177 >gi|332826696|gb|EGJ99518.1| hypothetical protein HMPREF9455_04114 [Dysgonomonas gadei ATCC BAA-286] Length = 167 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 33/170 (19%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 + S+ + VT + I S L+F + AGL+LLL F+ + + VY G V+V F+F I+ Sbjct: 15 VFSTIMAVTTQKIIRSATFLLFVLLGTAGLYLLLDYHFLMAVQIAVYAGGVMVLFIFAIL 74 Query: 76 MLD---IDIEVAEPRKKRGFLGSFFIGILA--AELIVCA-------SNFMVFSAEGELSR 123 + +D+ +P G F+ + A L +C + F + + EL Sbjct: 75 LTHEPGVDVRFEKP-------GRMFVAAVTALAGLGICGHIIFYNVNKFYTYVTQSEL-- 125 Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +++IG + QY P E +LL +IG I M+ +R Sbjct: 126 ------QMQDIGMAMMGTDKYQYLLPFEAISVLLLACIIGGI--MIARKR 167 >gi|156598690|gb|ABU85600.1| NADH-plastoquinone oxidoreductase subunit 6 [Scaevola aemula] Length = 176 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 22/151 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N I S FSL F V + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 31 NSIDSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFIN-----SSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN---------NVE 132 K L + G+ + +VC S F+ + R+++ K N N + Sbjct: 86 NSKDFRLWTVGDGVTS---LVCTSLFLSLITTIPDTSWYRIIWTTKANQIIEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 IG L T + P E ILL+++IGAIVL Sbjct: 143 QIGIHLSTDFFLPFEFISIILLVALIGAIVL 173 >gi|124360819|gb|ABN08791.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Medicago truncatula] Length = 176 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 25/176 (14%) Query: 4 QSLFFYLFSFMA---IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 ++L +L F+ I+ S VV + NPI+S FSL V + L++L + FVA L+ Sbjct: 5 ETLHDFLLVFLGSGIILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILSNSHFVAASQLL 64 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSA 117 +YVGA+ + F +M ++ + + L + GI LIVC S F + + Sbjct: 65 IYVGAINILITFAVMFMN-----SSEYYQDFNLWTVGDGI---TLIVCTSIFVSLITIIS 116 Query: 118 EGELSRLVF--KGNNV---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + +++ + N + + IG L T + P E+ ILL+++IGAIV Sbjct: 117 DTSWYGIIWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIV 172 >gi|315605119|ref|ZP_07880171.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon 180 str. F0310] gi|315313226|gb|EFU61291.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon 180 str. F0310] Length = 325 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/169 (21%), Positives = 86/169 (50%), Gaps = 2/169 (1%) Query: 6 LFFYLFSFMAIISSFL-VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + ++ + +A+++ L V+ + ++V ++ + A L++ A F+ + +VVY G Sbjct: 16 IILFVCTAIAMVACALGVLFCKKAAHAVICMVGVMLGLAILYIANSAPFMGVAQIVVYTG 75 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A+++ FLF+IM++ I R+ RG + +G L LI+ + A S+ Sbjct: 76 AIMMLFLFVIMLIGIGASDDYVRQSRGAIVGSVLGGLGLALIIATAIVKSSHAAHAPSKA 135 Query: 125 VFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + ++ +L+ ++ +E++G +L+ + +GA++L R K Sbjct: 136 TPTSDEPITDLAIMLFQEHWLSMELAGALLITAAVGAMLLTHSDRLTAK 184 >gi|309812378|ref|ZP_07706133.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dermacoccus sp. Ellin185] gi|308433683|gb|EFP57560.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dermacoccus sp. Ellin185] Length = 170 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 9/176 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F ++ S+ VT R +++ L +G +L+LGAE VA++ L+ Sbjct: 1 MTVHDALFACLGLISAASAICAVTTRQIVHAALWLTVCLATLSGCYLVLGAELVALVQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VYVGAV+V LF +M+ P + G + + +AA +I A+ ++FSA Sbjct: 61 VYVGAVVVLVLFAVML------TRAPIGRSGDHDAPIMTRMAALVIAAATGGLLFSAFVS 114 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 R ++ + L+ ++A+P E+ +LL +++GA+ ++ R R Sbjct: 115 AFGTRRARIDSGTTTDLAQNLFGRFAWPFEVVSLVLLSALVGALAMIGSRRSGGGR 170 >gi|89280689|ref|YP_514906.1| NADH dehydrogenase subunit 6 [Solanum lycopersicum] gi|122201762|sp|Q2MI47|NU6C_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|84372037|gb|ABC56354.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum lycopersicum] gi|89241725|emb|CAJ32448.1| NADH degydrogenase subunit 6 [Solanum lycopersicum] Length = 176 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 26/151 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L A FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130 K L + GI + +VC S F+ S +S + G +N Sbjct: 86 YYKDFHLWTVGDGITS---MVCISLFI--SLITTISDTSWYGIIWTTRSNQIIEQDFLSN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|219674001|ref|YP_002456485.1| NADH-plastoquinone oxidoreductase subunit 6 [Trifolium subterraneum] gi|193788970|gb|ACF20566.1| NADH-plastoquinone oxidoreductase subunit 6 [Trifolium subterraneum] Length = 176 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 22/161 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + NPI+S FSL V + L++L + FVA L++YVGA+ + +F +M Sbjct: 20 ILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLIYVGAINILIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVF--KGNN 130 + E + F + +G LIVC S F + + +++ + N Sbjct: 80 F----VNSCEYYQDFHF---WTVGD-GITLIVCTSIFVSLITIIPDTSWYGIIWTTRPNQ 131 Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + IG L T + P E+ ILL+++IGAIV Sbjct: 132 IIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIV 172 >gi|297790824|ref|XP_002863297.1| NADH dehydrogenase ND6 [Arabidopsis lyrata subsp. lyrata] gi|297309131|gb|EFH39556.1| NADH dehydrogenase ND6 [Arabidopsis lyrata subsp. lyrata] Length = 176 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 8/142 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----ELSRLVFKG--NNVENIGKVLY 139 + L + S + S G +L++++ + +N + IG L Sbjct: 90 FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAI 161 T + P E+ ILL+++IGAI Sbjct: 150 TDFFLPFELISIILLVALIGAI 171 >gi|290489872|gb|ADD31343.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Gunnera manicata] Length = 176 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 26/152 (17%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + L++ + FVA L++YVGA+ V +F +M ++ +E Sbjct: 30 TNPIYSAFSLGLVLVCISLLYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMN----GSE 85 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 K F + +G L VC S F+ S +S + G + Sbjct: 86 YYKDFHF---WTVGDGVTSL-VCTSIFV--SLITTISDTSWYGIIWTTRSNQIIEQDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N++ IG L T + P E+ ILL+++IGAI Sbjct: 140 NIQQIGIHLLTDFFLPFELISIILLVALIGAI 171 >gi|139389472|ref|YP_001123168.1| NADH dehydrogenase subunit 6 [Olimarabidopsis pumila] gi|221272339|sp|A4QJY5|NU6C_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286366|dbj|BAF49993.1| NADH dehydrogenase ND6 [Olimarabidopsis pumila] Length = 176 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 8/142 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----ELSRLVFKG--NNVENIGKVLY 139 + L + S + S G L++++ + +N + IG L Sbjct: 90 FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAI 161 T + P E+ ILL+++IGAI Sbjct: 150 TDFFLPFELISIILLVALIGAI 171 >gi|308746028|ref|YP_003934612.1| NADH-plastoquinone oxidoreductase subunit 6 [Cheilanthes lindheimeri] gi|302375461|gb|ADL29835.1| NADH-plastoquinone oxidoreductase subunit 6 [Cheilanthes lindheimeri] Length = 197 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 11/179 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ S V+ N S FS F + L+ + A+FVA +VYVGAV V +F +M Sbjct: 20 LLGSLGAVSFVNTANSAFSPGSVFTCISLLYFVSNADFVAAAQSLVYVGAVNVLTVFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNF----MVFSAEGELSRLVFKGNN 130 + D G+L S IL + L N + F+ + + GNN Sbjct: 80 ITDEPTGSNVAASGVGYLSASGACAILFSALAYVIHNTKWFDLSFTNQSGIIMSGIPGNN 139 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE-SNP-DNS 187 V+ +G L ++ P E++ +LL++++GAI RD K+ S+P DNS Sbjct: 140 VQQLGYKLLGEFVVPFELASILLLVALVGAI----NPARDEDALTTGKKSSASSPRDNS 194 >gi|298373154|ref|ZP_06983144.1| NADH dehydrogenase I, J subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298276058|gb|EFI17609.1| NADH dehydrogenase I, J subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 172 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 16/170 (9%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 +I S + +T ++ + S L+ + AG +L L F+A + + VY G V+V F+F I Sbjct: 6 LIMSVMAITTKSLLRSATYLLLTLICTAGFYLFLNYHFLAAVQVSVYAGGVVVLFVFAIF 65 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIG----------ILAAELIVCASNFMVFSAEGELSRLV 125 + EV + R ++ I IL + I A+ M A+ ++ + Sbjct: 66 LTTKKDEVLVKHEYRRYVYGALIALVGIGLVAYTILKTKFIYAANPSMEGDAQLSMADI- 124 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G + GK Q+ P E+ +LL +++G I++ + ++ ++++ Sbjct: 125 --GTALMGTGKY---QFLLPFEMLSLLLLAAIVGGILIARKDKKHGEKEE 169 >gi|167044393|gb|ABZ09070.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [uncultured marine crenarchaeote HF4000_APKG6D3] Length = 177 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 16/180 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F + + I+S+ + +R+ IY +L+ AG F+LL + FVA+ + VY Sbjct: 7 MVDALFLGIAVLTIVSAIAALEMRSLIYGGLALMGTLGGIAGFFILLDSPFVALFQIAVY 66 Query: 63 VGAVIVFFLFIIMMLDIDI---EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VG++ V LF+IM++ ++ + +P+++ + I L++C + S Sbjct: 67 VGSIAVLILFVIMLVKSELIFQKKEDPKRRYAGIALMLI------LMICLGAVIFNSG-- 118 Query: 120 ELSRLVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQD 175 LS + + V+ IG+ Y L +L S+ GA++L R D +R D Sbjct: 119 -LSSITTEEPPVDYKEIGEDFLIYYWPALIAMALVLSGSITGALILARRQDAVEDEQRTD 177 >gi|116747654|ref|YP_844341.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Syntrophobacter fumaroxidans MPOB] gi|116696718|gb|ABK15906.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Syntrophobacter fumaroxidans MPOB] Length = 175 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 10/126 (7%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM---LDIDIE 82 RN +++V LI A GL+L LG+ F+ ++ L++YVGA+ V +F IM+ L +++ Sbjct: 33 RNILHNVLGLILALSGIGGLYLSLGSFFMGLMQLLIYVGAICVAIVFAIMLSRPLHLEVP 92 Query: 83 VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142 E K + + + ++A +V +N++ G +VE IG +L T+Y Sbjct: 93 KREAPKVAMAVATSVVFLVAMVGVVLRTNWVPAVERG-------TDWSVEAIGDLLLTRY 145 Query: 143 AYPLEI 148 A E+ Sbjct: 146 ALVFEV 151 >gi|326200332|gb|ADZ52371.1| NADH dehydrogenase subunit 6 [Asclepias syriaca] Length = 176 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N IYS FSL V + ++LL + FVA L++YVGAV V LF +M + D E Sbjct: 31 NSIYSAFSLGLVLVCISLFYILLSSYFVAAAQLLIYVGAVNVLILFAVMFMS-DSE---- 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGEL----SRLVFKGN---NVE 132 K L + G+ L+VC S F+ S G + S V + + N + Sbjct: 86 YYKDSRLWTVGDGV---TLVVCTSLFISLITTIPDTSWYGIIWTTRSNQVLEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 143 QIGIHLSTDFFLPFELISLILLVALIGAI 171 >gi|150004308|ref|YP_001299052.1| NADH dehydrogenase I, chain J [Bacteroides vulgatus ATCC 8482] gi|237709344|ref|ZP_04539825.1| NADH dehydrogenase I [Bacteroides sp. 9_1_42FAA] gi|237724578|ref|ZP_04555059.1| NADH dehydrogenase subunit I [Bacteroides sp. D4] gi|254883417|ref|ZP_05256127.1| NADH dehydrogenase subunit I [Bacteroides sp. 4_3_47FAA] gi|265755020|ref|ZP_06089934.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_33FAA] gi|294776881|ref|ZP_06742344.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides vulgatus PC510] gi|319644243|ref|ZP_07998756.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_40A] gi|149932732|gb|ABR39430.1| NADH dehydrogenase I, chain J [Bacteroides vulgatus ATCC 8482] gi|229437137|gb|EEO47214.1| NADH dehydrogenase subunit I [Bacteroides dorei 5_1_36/D4] gi|229456729|gb|EEO62450.1| NADH dehydrogenase I [Bacteroides sp. 9_1_42FAA] gi|254836210|gb|EET16519.1| NADH dehydrogenase subunit I [Bacteroides sp. 4_3_47FAA] gi|263234631|gb|EEZ20210.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_33FAA] gi|294449357|gb|EFG17894.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides vulgatus PC510] gi|317384234|gb|EFV65206.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_40A] Length = 167 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 9/172 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q + F + + + S L VT + + L+F AG++ L F+ + L+ Sbjct: 1 MTLQLIVFIVLALFIAVCSVLAVTTSRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y G + V ++F I++ + AE R K G + + I +A L +C F++ E Sbjct: 61 IYAGGITVLYVFSILLTSSQGDKAE-RLKNGKMVAGAISTIAG-LAICL--FVMLKNEFL 116 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168 S V +V IG L QY P E+ +LL ++G I L+ R R Sbjct: 117 PSHFVHGELDVRTIGHALMGMEKYQYILPFEVISVLLLACIVGGI-LIARKR 167 >gi|256593070|gb|ACV03490.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. SCF-2009] Length = 53 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 1/54 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAM 56 M SLF +FS + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ + Sbjct: 1 MNSLFM-IFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGL 53 >gi|292559559|ref|YP_003540986.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera] gi|290790967|gb|ADD63222.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera] gi|294620632|gb|ADF28201.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera] Length = 176 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIFSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 + + G+ + +VC S ++FS + + G + Sbjct: 85 EYSNDSYFWTIGDGVTS---LVCTS--ILFSLITIIPDTSWYGIFWTTRSSQIIEQDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 N++ IG L T + P E+ ILL+S+IGAI + Sbjct: 140 NIQQIGIHLSTDFYLPFELISIILLVSLIGAITM 173 >gi|159161214|ref|YP_001542500.1| NADH-plastoquinone oxidoreductase subunit 6 [Ceratophyllum demersum] gi|221272315|sp|A8SEF8|NU6C_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|148508497|gb|ABQ81504.1| NADH-plastoquinone oxidoreductase subunit 6 [Ceratophyllum demersum] gi|227481172|emb|CAP62551.1| NADH dehydrogenase ND6 subunit [Ceratophyllum demersum] Length = 176 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 PIYS FSL FV + ++ + FVA L++YVGAV V +F +M ++ Sbjct: 30 TTPIYSAFSLGLVFVCISLFYIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 K L + GI + +VC S ++FS + + G + Sbjct: 85 EYYKDFHLWTVGDGITS---LVCTS--ILFSLITTILETSWYGIIWTTRSNQIIEQDLTS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 NV+ +G L T + P E++ ILL+++IGAI + Sbjct: 140 NVQQMGIHLSTDFYLPFELTSIILLVALIGAIAM 173 >gi|46200213|ref|YP_005880.1| NADH-quinone oxidoreductase chain J [Thermus thermophilus HB27] gi|46197841|gb|AAS82253.1| NADH-quinone oxidoreductase chain J [Thermus thermophilus HB27] Length = 179 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 37/52 (71%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 RN I++ +LI F+ AG+++ L A F+ I ++VY GA++V FLF+IM+L Sbjct: 23 RNAIHAALALILNFLVLAGVYVALDARFLGFIQVIVYAGAIVVLFLFVIMLL 74 >gi|313679594|ref|YP_004057333.1| NADH dehydrogenase subunit j [Oceanithermus profundus DSM 14977] gi|313152309|gb|ADR36160.1| NADH dehydrogenase subunit J [Oceanithermus profundus DSM 14977] Length = 185 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I S+ VT++N +++ +L+ F+ A ++ L A+F+ I ++VY GAV+V FLF+IM Sbjct: 13 IASALAAVTLKNAVHAGLALVGNFLVLATVYFALEAQFLGWIQIIVYAGAVMVLFLFVIM 72 Query: 76 ML-DIDIEVAEPR 87 +L D +V R Sbjct: 73 LLFDAKADVGAGR 85 >gi|115604988|ref|YP_784440.1| NADH-plastoquinone oxidoreductase subunit 6 [Drimys granadensis] gi|122164393|sp|Q06GU3|NU6C_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|112032716|gb|ABH88351.1| NADH-plastoquinone oxidoreductase subunit 6 [Drimys granadensis] Length = 176 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + +L + FVA L++YVGAV V +F +M ++ Sbjct: 30 TNPIFSAFSLGLVLVCISLFHILSNSYFVAAAQLLIYVGAVNVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 +L + G+ + +VC S ++FS +S + G + Sbjct: 85 EYYNDFYLWTVGDGVTS---LVCTS--ILFSLITTISDTSWYGIIWTTGSNQIIEQDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 NV+ IG L T + P E+ ILL+++IGAI + Sbjct: 140 NVQQIGIHLSTDFYLPFELISIILLVALIGAIAM 173 >gi|311741751|ref|ZP_07715562.1| NADH-quinone oxidoreductase subunit J [Aeromicrobium marinum DSM 15272] gi|311314757|gb|EFQ84663.1| NADH-quinone oxidoreductase subunit J [Aeromicrobium marinum DSM 15272] Length = 255 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/162 (20%), Positives = 85/162 (52%), Gaps = 2/162 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + + ++++ +V R +++ L ++ A L+ + GA F+ + ++VY GA++ Sbjct: 4 FWILAPIMVLAALGLVFSRKAVHAALWLAVVMISLAVLYAVQGAPFLFAVQIIVYTGAIM 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF++M++ ++ +++ +G G+ +G+L L+V + L Sbjct: 64 MLFLFVVMLVGVESDLSLTETIKGQRAGAIVVGLLFGVLLVIGVGQVSVGPVTGLDEANA 123 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G NV + +++ + + + +L+ +++GA+VL R R Sbjct: 124 NG-NVYGLAALMFGPFVLAFQFTAALLVTAVLGAMVLAHRER 164 >gi|139390208|ref|YP_001123780.1| NADH dehydrogenase subunit 6 [Lobularia maritima] gi|221272330|sp|A4QLQ0|NU6C_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286985|dbj|BAF50605.1| NADH dehydrogenase ND6 [Lobularia maritima] Length = 176 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCA-------SNFMVFSAEG-----ELSRLVFKG--NNVE 132 L + GI + +VC S + S G L++L+ + +N + Sbjct: 90 FN----LWTVGDGITS---LVCTTILFSLISTILDTSWYGVIWTTRLNQLLEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL++++GAI Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALVGAI 171 >gi|139390005|ref|YP_001123604.1| NADH dehydrogenase ND6 [Draba nemorosa] gi|221272322|sp|A4QL74|NU6C_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286807|dbj|BAF50429.1| NADH dehydrogenase ND6 [Draba nemorosa] Length = 176 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 26/151 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + ++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFS-----AEGELSRLVFKG-----------NN 130 L + GI + +VC + ++FS + R+++ +N Sbjct: 90 FT----LWTVGDGITS---LVCTT--LLFSLISTILDTSWYRVIWTTRLNQILEQDLISN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|323149135|ref|YP_004222699.1| NADH-plastoquinone oxidoreductase subunit 6 [Anthriscus cerefolium] gi|289645628|gb|ADD13691.1| NADH-plastoquinone oxidoreductase subunit 6 [Anthriscus cerefolium] Length = 176 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132 K L + G+ + +VC S F+ + + + S K N N + Sbjct: 86 YYKNFHLWTVGDGVTS---MVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|289582896|ref|YP_003481362.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Natrialba magadii ATCC 43099] gi|289532449|gb|ADD06800.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Natrialba magadii ATCC 43099] Length = 96 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F LF+F+ + S VV + +P +S L A ++ A F++ AEFVAM+ ++VYVG V+ Sbjct: 8 FTLFAFITLASGLGVVLLEDPWHSALMLGVALMSIAVHFVMQAAEFVAMMQVLVYVGGVL 67 Query: 68 VFFLFIIMM 76 + F +M+ Sbjct: 68 ILITFAVML 76 >gi|319901161|ref|YP_004160889.1| NADH dehydrogenase subunit J [Bacteroides helcogenes P 36-108] gi|319416192|gb|ADV43303.1| NADH dehydrogenase subunit J [Bacteroides helcogenes P 36-108] Length = 170 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + + S L VT + S L+F AG++ LLG F+ + ++ Sbjct: 3 ITLETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQVM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ + +VA K+ FL A +++ + F A + Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDVAAKLKRSKFLAGLGATAGGAVIVLFITLNHKFIATTD 122 Query: 121 LSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168 + L N+ IG + + +Y Y P E +LL ++G I L+ R R Sbjct: 123 VQPLEV---NIRTIGHHMLSGEKYGYLLPFEAVSILLLACIVGGI-LIARKR 170 >gi|313183874|ref|YP_004021717.1| NADH-plastoquinone oxidoreductase subunit 6 [Prunus persica] gi|309321486|gb|ADO65027.1| NADH-plastoquinone oxidoreductase subunit 6 [Prunus persica] Length = 176 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 22/154 (14%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV NPIYS FSL V + ++LL + FVA L++YVGA+ V +F +M ++ Sbjct: 26 VVLFTNPIYSAFSLGLVLVCISLFYILLNSYFVAAAQLLIYVGAINVLIVFAVMFMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---------- 128 +E K L + +G L VC S F M+ + +++ Sbjct: 83 -GSEYYKD---LNLWTVGD-GVTLPVCTSIFVLLMITITDTSWYGIIWTTRSNQIIEQDL 137 Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +N + IG L T + P E ILL ++IGAI Sbjct: 138 ISNSQQIGIHLSTDFFLPFEFVSIILLAALIGAI 171 >gi|225544175|ref|YP_002720165.1| ndhG [Jatropha curcas] gi|224979616|gb|ACN72743.1| ndhG [Jatropha curcas] Length = 176 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 12/145 (8%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPIYS FSL F V + ++L + FVA L++YVGA+ V LF +M + D Sbjct: 30 TNPIYSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136 ++ S FI ++ I+ +++ ++++ + +N + IG Sbjct: 90 FNLWTVGNGVTSLVCTSIFISLIT---IISDTSWYGIIWTTRTNQIIEQDLISNGQQIGI 146 Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161 L T + P + ILL+++IGAI Sbjct: 147 HLSTDFFLPFDFISVILLVALIGAI 171 >gi|197131410|gb|ACH47223.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium carolinianum] Length = 176 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 22/150 (14%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 N IYS FSL F+ + ++L + FVA L++YVGA+ + +F +M ++ Sbjct: 30 TNLIYSAFSLGLVFICISLFYILANSHFVAAAQLLIYVGAINILIIFAVMFIN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCA-------SNFMVFSAEG-----ELSRLVFKG--NNV 131 K LG+ G A +VC SN + S G +++V K +N Sbjct: 85 EYSKDLNLGTVGDG---ATSLVCTTLFLSLISNILDTSWYGIIWTTRATQIVEKDLISNS 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 142 QQIGIRLSTDFFLPFELISIILLVALIGAI 171 >gi|27904654|ref|NP_777780.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372471|sp|Q89AT8|NUOJ_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|27904051|gb|AAO26885.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 164 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 6/167 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFY S I+ + + RN +YS+ LI +FV + +F LGA F A + +++Y GA+ Sbjct: 4 FFYSSSLATIVFTVCSIFSRNLMYSLLYLILSFVFTSCVFFSLGATFAAALEVIIYAGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F+F IMM + K ++I L I+ F + S + ++ + Sbjct: 64 MVLFVFFIMMFNFKKSTLYAEKIFDKNNYYYINFLFLLCILIFPFFFILSYLYK-EKIFY 122 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + + L++ Y +E+S +LL ++I ++ H I+R Sbjct: 123 MVVSTKLVAIKLFSDYILVIELSSIVLLSALI-----IVSHIGKIRR 164 >gi|57505807|ref|ZP_00371732.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Campylobacter upsaliensis RM3195] gi|57015837|gb|EAL52626.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Campylobacter upsaliensis RM3195] Length = 172 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 12/169 (7%) Query: 13 FMAIISSFLVVTV--RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F +I SF +V V +N +YS+ +L V + + +L AEF+ I ++VY GAV+ + Sbjct: 10 FSVLILSFFLVAVLSKNMLYSLSALAGGMVFLSSFYFMLDAEFLGAIQIIVYSGAVLGIY 69 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 F +M D + E K F SFF ++ L+ ++ M F L F Sbjct: 70 SFAMMFFDASKDFKERLK---FKKSFF-ALIGLSLVGLFASLMSFKLNSVNVDLPFIDTA 125 Query: 131 VENIGKVL----YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ++ K L +++Y E +LL++++ AIV L H+ IK + Sbjct: 126 LFDLNKQLAFAIFSKYLLAFEFVAILLLIALVCAIV--LTHKELIKEKQ 172 >gi|295697427|ref|YP_003590665.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus tusciae DSM 2912] gi|295413029|gb|ADG07521.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus tusciae DSM 2912] Length = 172 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 48/76 (63%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F+L + +AI +FL+ + ++ V S+ +F++ AGLF +LGAEF+ + L+ Sbjct: 1 MAQNVITFFLLAGVAIAGAFLMFRSKRIVHMVLSIALSFLSLAGLFAVLGAEFLFVAQLI 60 Query: 61 VYVGAVIVFFLFIIMM 76 VY GA+ + +F IM+ Sbjct: 61 VYSGAITILAVFSIML 76 >gi|238898692|ref|YP_002924373.1| NADH dehydrogenase I chain J [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466451|gb|ACQ68225.1| NADH dehydrogenase I chain J [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 188 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 91/171 (53%), Gaps = 8/171 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++++++ V+ N I+S+ LI + + + +F LGA + ++VY GA++ Sbjct: 5 FYTAALVSVLATVRVIFHTNAIHSLLYLIISLLAISVVFFSLGAYLAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSAEGELSRL 124 V F+F++MML++ + E +++ G F++G + + L+ F S E + Sbjct: 65 VLFVFVVMMLNLG-QSEEKQERVGLKPVFWVGPSLLCSLLLLALLKGFHGLSGESMIGTW 123 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 V + ++IG L++ Y +E++ +LL ++ A L +++ ++ + Sbjct: 124 V----SAKSIGVHLFSAYILAVELASMLLLAGLVVAFHLGKENKKRLEEKK 170 >gi|297569879|ref|YP_003691223.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfurivibrio alkaliphilus AHT2] gi|296925794|gb|ADH86604.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfurivibrio alkaliphilus AHT2] Length = 173 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 11/166 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+ F + I + + N I +V L V AG++ L + F+A++ +++Y GAV Sbjct: 15 FFGFILLIIFGALVATNAVNLIRAVCGLALCLVGVAGIYYFLQSPFLALMQVLIYAGAVC 74 Query: 68 VFFLFIIMMLDID----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 V +F +M+ + +E A P L AA + + + ++ E S Sbjct: 75 VAIVFAVMLAEPQGAKRLERAHP------LAGPGAFAAAALMAWGLAALALRTSWPEASS 128 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V G +E++G+ + T + E+ ILL+++IG++VL R RR Sbjct: 129 QVNAG-ALEDVGRAMMTTFVVSFELISLILLVAIIGSLVLARRGRR 173 >gi|290489842|gb|ADD31328.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Antirrhinum majus] Length = 178 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 28/164 (17%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV NPIYS FSL + ++L + FVA L++YVGA+ V +F +M Sbjct: 20 ILGSLGVVLFPNPIYSAFSLGLVLFCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVM 79 Query: 76 MLD----IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVF-- 126 ++ D E +P + S IVC S F + + +V+ Sbjct: 80 FMNGSEYYDYEDFQPWTVGDGVTS----------IVCTSLFISLLTTIPDTSWYGIVWTT 129 Query: 127 KGN---------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 K N N + IG L T + P E+ ILL+++IGAI Sbjct: 130 KSNQILEQDLISNSQQIGIHLATDFFLPFELISIILLVALIGAI 173 >gi|12895|emb|CAA31402.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] Length = 137 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 19/129 (14%) Query: 39 FVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK-KRGF--LGS 95 F+N++ + ++LG EF+A++ L+VYVGA+ V FLF+IM+L+I E R RG+ LG Sbjct: 10 FINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIP--ATELRAYSRGWSTLGI 67 Query: 96 FFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKVLYTQYAYPLEISGF 151 F + + F + + G R + G ++ N+G LY +A L ++ Sbjct: 68 F--------VFIINGVFQITPSMGP--RGIITGLPGAESITNLGHALYLYFADLLILNSL 117 Query: 152 ILLLSMIGA 160 +L +++ G Sbjct: 118 VLTVALFGC 126 >gi|323148880|ref|YP_004221972.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium carvifolium] gi|316926344|gb|ADU58197.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium carvifolium] Length = 179 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 22/150 (14%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 N IYS FSL F+ + ++L FVA L++YVGA+ + LF +M ++ Sbjct: 30 TNLIYSAFSLGLVFICISLFYILANCHFVAAAQLLIYVGAINILILFAVMFIN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCA-------SNFMVFSAEG-----ELSRLVFKG--NNV 131 K G+ G A +VC SN + S G + ++++ K +N Sbjct: 85 EYSKDFHFGTVGDG---ATSLVCTTLFLSLISNILNTSWYGVIWTTKAAQIIEKDLISNS 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 142 QQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|290489852|gb|ADD31333.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Lonicera japonica] Length = 176 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 22/154 (14%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M + Sbjct: 26 VVLLPNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMK--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGEL-----SRLVFKG- 128 K L + G+ A +VC S F+ S G L S+++ + Sbjct: 83 --GSEYYKDFHLLAVGDGLTA---MVCTSLFVSLITTIPDTSWYGILWTTKSSQIIEQDL 137 Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +N + IG L T + P E+ ILL+S+IGAI Sbjct: 138 ISNSQQIGIHLSTDFFLPFELISIILLVSLIGAI 171 >gi|11466018|ref|NP_054560.1| NADH dehydrogenase subunit 6 [Nicotiana tabacum] gi|78102601|ref|YP_358740.1| NADH dehydrogenase subunit 6 [Nicotiana sylvestris] gi|81301631|ref|YP_398926.1| NADH dehydrogenase subunit 6 [Nicotiana tomentosiformis] gi|14194987|sp|Q32722|NU6C_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|122212870|sp|Q33BW9|NU6C_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|122213586|sp|Q3C1Q1|NU6C_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|2924281|emb|CAA77434.1| NADH dehydrogenase ND6 subunit [Nicotiana tabacum] gi|77799628|dbj|BAE46717.1| NADH dehydrogenase ND6 subunit [Nicotiana sylvestris] gi|80750990|dbj|BAE48066.1| NADH dehydrogenase ND6 subunit [Nicotiana tomentosiformis] Length = 176 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 26/151 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130 K L + GI + +VC S F+ S +S + G +N Sbjct: 86 YYKDFHLWTVGDGITS---MVCISLFI--SLITTISDTSWYGIIWTTRSNQIIEQDFISN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|157415786|ref|YP_001483042.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni 81116] gi|157386750|gb|ABV53065.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni 81116] gi|307748425|gb|ADN91695.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Campylobacter jejuni subsp. jejuni M1] gi|315931250|gb|EFV10220.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Campylobacter jejuni subsp. jejuni 327] Length = 172 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 11/158 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + V +N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + F IM D Sbjct: 20 IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAIMFFDAS 79 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136 E E K + SFF ++ + +++ A + S + L+ N + + Sbjct: 80 KEFKEQLKAK---KSFFTLVVLSAILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++++Y E +LL++++ AIVL R+++ ++ Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIVL---TRKELTKE 170 >gi|39937316|ref|NP_949592.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rhodopseudomonas palustris CGA009] gi|39651174|emb|CAE29697.1| NADH-ubiquinone dehydrogenase chain J [Rhodopseudomonas palustris CGA009] Length = 168 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 16/179 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SL A+IS+ + VT N ++++ L+ + A F LGA F A++ +++Y Sbjct: 1 MSSLLAIYAGAFALISAAVSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLIMIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGE 120 GA++V F+F++M L I E R++ ++ + +L + LIV F + A G+ Sbjct: 61 AGAIVVLFVFVVMTLPISPESIT-RERALLRRAWPLPVLMSVLIVAPFVFGEIGLKATGQ 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + + + +GK+L+ +A +E++ +L+ +IG R I R D S + Sbjct: 120 PAPV-----SAQEVGKLLFGPWALAVELASLLLMAGLIGV--------RHIGRNDRSPR 165 >gi|156584755|gb|ABU85209.1| NADH-plastoquinone oxidoreductase subunit 6 [Anethum graveolens] Length = 176 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLACTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN---------NVE 132 K L + G+ + IVC S F+ + + + S K N N + Sbjct: 86 YYKDFHLWTVGDGVTS---IVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDFISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|29126634|ref|NP_803496.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL105] gi|29029490|gb|AAO64941.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL105] Length = 203 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 42/67 (62%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 +S LV+ R+PI SV L ++ G+FLLL F+ + ++VYVGA+ + FLF I M Sbjct: 16 LSGVLVIVSRSPINSVLFLCGLYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILFLFTIFM 75 Query: 77 LDIDIEV 83 +++ + + Sbjct: 76 INVRLTL 82 >gi|87306368|ref|ZP_01088515.1| NADH Dehydrogenase I Chain J [Blastopirellula marina DSM 3645] gi|87290547|gb|EAQ82434.1| NADH Dehydrogenase I Chain J [Blastopirellula marina DSM 3645] Length = 245 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++FFYL SF+A + +V N + F L+ + +GL L GA FV + L++YV Sbjct: 15 HTVFFYLTSFIACGFALAMVVSSNVVRMAFFLVLSLAATSGLIFLTGAHFVGAMQLMIYV 74 Query: 64 GAVIVFFLFIIMM 76 G +V +F +M+ Sbjct: 75 GGTVVLLIFGVML 87 >gi|332881560|ref|ZP_08449209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680558|gb|EGJ53506.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 171 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 13/168 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + M + S L VT + + +L+F AGL+ +LG ++ + L VY G ++ Sbjct: 11 FGIVALMMAVCSVLAVTSGRILRAATALLFVLFGTAGLYFMLGYTYLGAVQLSVYAGGIV 70 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA----ELIVCASNFMVFSAEG--EL 121 V ++F I++ D + E R RG + + +LA ++ + F FS EL Sbjct: 71 VLYVFSILLTRSDKNMNE-RIPRGRWFAAILTVLAGFGLTVFLLSSYGFARFSVPPLVEL 129 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V GN + + K Q+ P E+ +LL MIGAI M+ +R Sbjct: 130 DP-VKVGNALIGMEK---YQFVLPFEVVSVLLLACMIGAI--MIARKR 171 >gi|189162324|ref|YP_001936570.1| NADH dehydrogenase subunit 6 [Fagopyrum esculentum subsp. ancestrale] gi|221272323|sp|B2XWJ4|NU6C_FAGEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|166065410|gb|ABY79785.1| NADH dehydrogenase subunit 6 [Fagopyrum esculentum subsp. ancestrale] Length = 176 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 24/151 (15%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + +++ ++FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIFSAFSLGLVLVCISLFYIIANSQFVASAQLLIYVGAINVLIIFAVMFIN---GLEY 86 Query: 86 PRKKRGF-LGSFFIGILAAELIVCASNF-----MVFSAEG-------ELSRLVFKG--NN 130 + R F LG L++C F + + G +L++++ + NN Sbjct: 87 DKNLRLFTLGD------GMTLVICTGIFFLLITTILNTSGYGIIWTTKLNQILEQDLINN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 141 SQQIGIHLSTDFFPPFELISIILLVALIGAI 171 >gi|284164398|ref|YP_003402677.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Haloterrigena turkmenica DSM 5511] gi|284014053|gb|ADB60004.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Haloterrigena turkmenica DSM 5511] Length = 91 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 47/74 (63%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++++ F F+ + ++S+ VV + P ++ L A ++ A F++L AEFVAM+ ++VY Sbjct: 2 LETIAFAAFALVTLLSALGVVLLEEPWHAALMLGVALMSIAVHFVMLAAEFVAMMQILVY 61 Query: 63 VGAVIVFFLFIIMM 76 VG V+V F +M+ Sbjct: 62 VGGVLVLITFAVML 75 >gi|262400770|gb|ACY66259.1| NADH dehydrogenase subunit 6 [Brassica napus] Length = 176 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 26/151 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILANSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSID 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130 L + GI + +VC + ++FS + + G +N Sbjct: 90 FN----LWTVGNGITS---VVCTT--ILFSLISTILDTSWYGVIWTTRLNQILEQDLISN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|119368552|ref|YP_913239.1| NADH dehydrogenase ND6 subunit [Gossypium barbadense] gi|221272324|sp|A0ZZ88|NU6C_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|119224914|dbj|BAF41300.1| NADH dehydrogenase ND6 subunit [Gossypium barbadense] Length = 176 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 14/150 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L FVA L++YVGA+ V LF++M ++ +E Sbjct: 31 NPIYSAFSLGLVLVCISLFYILTNYHFVATAKLLIYVGAINVLILFVVMFMN----SSEY 86 Query: 87 RK--KRGFLGSFFIGILAAELIVC-ASNFMVFSAEGEL----SRLVFKGN---NVENIGK 136 K +G+ ++ ++V S + S G + S + + + N + IG Sbjct: 87 YKDFNPWTIGNGLTSLVCTSILVSLISTILDTSWYGIIWTTRSNQIIEQDLIGNSQQIGI 146 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E ILL+++IGAI + L+ Sbjct: 147 HLATDFFLPFEFISIILLVALIGAIDVTLQ 176 >gi|86149418|ref|ZP_01067649.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840200|gb|EAQ57458.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni CF93-6] Length = 172 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + V +N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + F +M D Sbjct: 20 IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136 E E K + SFF ++ + +++ A + S + L+ N + + Sbjct: 80 KEFKEQLKAK---KSFFTLVVLSTILLLAMLIGFKYQNISTDLPLNDPTLFDFN-KQLAL 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++++Y E +LL++++ AIV L H+ K + Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIV--LTHKELTKEKQ 172 >gi|27262370|gb|AAN87466.1| NADH-quinone oxidoreductase chain J [Heliobacillus mobilis] gi|111074964|gb|ABH04826.1| NAD(P)H-quinone oxidoreductase subunit 6 [Heliobacillus mobilis] Length = 169 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + M I+S+ VV +++ ++S L +F+ AGL++LL A+F+A + ++VY GAV Sbjct: 10 FYGLAGMTILSAAGVVFLKDIVHSALMLALSFIGVAGLYVLLNADFLAAVQILVYGGAVA 69 Query: 68 VFFLFIIMM 76 + F +M+ Sbjct: 70 ILIAFGVML 78 >gi|91209042|ref|YP_538903.1| NADH dehydrogenase subunit 6 [Solanum bulbocastanum] gi|122201800|sp|Q2MID4|NU6C_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|84371949|gb|ABC56267.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum bulbocastanum] Length = 176 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 26/151 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130 K L + GI + +VC S F+ S +S + G +N Sbjct: 86 YYKDFHLWTVGNGITS---MVCISLFI--SLITTISDTSWYGIIWTTRSNQIIEQDFLSN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|304312248|ref|YP_003811846.1| NADH dehydrogenase I, subunit J [gamma proteobacterium HdN1] gi|301797981|emb|CBL46203.1| NADH dehydrogenase I, subunit J [gamma proteobacterium HdN1] Length = 175 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FYL S + + S +VV N ++S+ LI + + A +F +GA F A + ++VY Sbjct: 1 MEMFTFYLTSIIILTSILMVVISANAVHSLLYLILSSLAMAVIFFQMGAPFAAALEVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 GA++V F+F++MML++ E + LG Sbjct: 61 AGAIMVLFVFVVMMLNLGQAAVEEERTLMPLG 92 >gi|240272796|gb|EER36347.1| NADH-ubiquinone oxidoreductase chain 6 [Ajellomyces capsulatus H143] gi|325087325|gb|EGC40635.1| NADH-ubiquinone oxidoreductase chain 6 [Ajellomyces capsulatus H88] Length = 202 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 43/69 (62%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + I S + +NP+ S+F LI F++ + +G EF+ + L+VYVGAV + F+FI Sbjct: 23 ICIFFSLYTIISKNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAVSILFIFI 82 Query: 74 IMMLDIDIE 82 +M+++I I Sbjct: 83 LMLINIRIS 91 >gi|306486042|gb|ADM92668.1| NADH-plastoquinone oxidoreductase subunit 6 [Davidia involucrata] Length = 176 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 8/145 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M + D Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 + S F+ ++ L + + ++ N+ + IG L Sbjct: 90 FHLWTVGDGVTSLVCTSIFVSLITTILDTSWYGIIWTTRSNQIMEQDLISNS-QQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVL 163 T + P E+ ILL+++IGAI + Sbjct: 149 STDFFLPFELISIILLVALIGAIAI 173 >gi|153951541|ref|YP_001398852.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. doylei 269.97] gi|152938987|gb|ABS43728.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 172 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + V +N +YS+ +L+ V +G + LL AEF+ +I ++VY GAV+ + F +M D Sbjct: 20 IAVLSKNMLYSLSALVGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136 E E K + SFF ++ + +++ A + S + L+ N + + Sbjct: 80 KEFKEQLKAK---KSFFTLVVLSAILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++++Y E +LL++++ AI L H+ K + Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIT--LTHKELTKEKQ 172 >gi|294814433|ref|ZP_06773076.1| Putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC 27064] gi|326442823|ref|ZP_08217557.1| putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC 27064] gi|294327032|gb|EFG08675.1| Putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC 27064] Length = 218 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 25/201 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ L VT R +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 23 FLLVGLVTFGAAVLTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 82 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--------EG 119 V LF +M+ I R G+ ++ + A A ++V A +G Sbjct: 83 VILLFGLMLTRAPIG----RSPDADSGNRWVALAVALTAATALVWVVVDAFRTTWIDLDG 138 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDIS 177 + + E G +L+ + P E +LL +++GAIVL + R D Sbjct: 139 PVQ------GSTEVTGSILFRHWVLPFEALSVLLLAALVGAIVLSRKQAEADTRAEADTP 192 Query: 178 KQLESNPDNSIVMVKVKSGKG 198 ++ P N ++G G Sbjct: 193 SGNDALPGNG-----PRTGNG 208 >gi|108773182|ref|YP_635692.1| NADH dehydrogenase subunit 6 [Solanum tuberosum] gi|122196327|sp|Q27RZ6|NU6C_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|88656857|gb|ABD47110.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum tuberosum] Length = 176 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 26/151 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL + + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLICTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130 K L + GI + +VC S F+ S +S + G +N Sbjct: 86 YYKDFHLWTVGDGITS---MVCISLFI--SLITTISDTSWYGIIWTTRSNQIIEQDFLSN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|121613130|ref|YP_001001210.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni 81-176] gi|167006103|ref|ZP_02271861.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni 81-176] gi|218563159|ref|YP_002344939.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|87249905|gb|EAQ72864.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|112360866|emb|CAL35667.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927684|gb|EFV07015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 172 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + V +N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + F +M D Sbjct: 20 IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136 E E K + SFF ++ + +++ A + S + L+ N + + Sbjct: 80 KEFKEQLKAK---KSFFTLVVLSTILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++++Y E +LL++++ AIV L H+ K + Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIV--LTHKELTKEKQ 172 >gi|225554147|gb|EEH02512.1| NADH dehydrogenase subunit 6 [Ajellomyces capsulatus G186AR] Length = 202 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 43/69 (62%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + I S + +NP+ S+F LI F++ + +G EF+ + L+VYVGAV + F+FI Sbjct: 23 ICIFFSLYTIISKNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAVSILFIFI 82 Query: 74 IMMLDIDIE 82 +M+++I I Sbjct: 83 LMLINIRIS 91 >gi|146307443|ref|YP_001187908.1| NADH dehydrogenase subunit J [Pseudomonas mendocina ymp] gi|145575644|gb|ABP85176.1| NADH dehydrogenase subunit J [Pseudomonas mendocina ymp] Length = 169 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 40/63 (63%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NP++++ LI + + + +F LGA F + ++VY GA++V F+F++MML++ + Sbjct: 24 NPVHALLYLIVSLLAVSMVFFALGAPFAGALEIIVYAGAIMVLFVFVVMMLNLGPAAVDQ 83 Query: 87 RKK 89 +K Sbjct: 84 ERK 86 >gi|30315629|ref|NP_847980.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL94] gi|30230282|gb|AAO62892.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL94] Length = 201 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 38/177 (21%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 LV+ R+PI SV L ++ G+FLLL F+ + ++VYVGA+ + FLF I M+++ Sbjct: 20 LVIVSRSPINSVLFLCGMYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILFLFTIFMINVR 79 Query: 81 IEV-----AEPRKKRGFLGSF-FIGILAAEL------------------IVCASNFMVFS 116 + + A P L F F I A+L IV +V S Sbjct: 80 LTLQLGSFASPLAAILLLAGFAFYFIFFADLSFSQDLPVLSSLFGSSQTIVNNDTTLVTS 139 Query: 117 AEGE----------LSRLVFKGNNVENIGKVLYTQYAYPLE--ISGFILLLSMIGAI 161 E S L+ + +++ + +++ YAYPL + GF+LL+ M+ I Sbjct: 140 GNWESNFRSIYASDWSHLLGRPSDLTMLANMIF--YAYPLALILVGFLLLVVMVAII 194 >gi|189459780|ref|ZP_03008565.1| hypothetical protein BACCOP_00409 [Bacteroides coprocola DSM 17136] gi|189433509|gb|EDV02494.1| hypothetical protein BACCOP_00409 [Bacteroides coprocola DSM 17136] Length = 171 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 13/175 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + +Q + FY+ + + S L VT + + L+F ++ +LG F+ + L+ Sbjct: 3 ITLQEIVFYVVAAAIAVFSVLAVTTGKILRAATYLLFVLFGTGAIYGVLGYTFLGAVQLM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ D + P + + ++ A L++ F++F+ G Sbjct: 63 VYAGGIVVLYVFSILLTQSDKNMKYPINRGKLISVLLTTLIGAALVL----FLIFT-NGF 117 Query: 121 LSRLVFKGNNVEN-------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 ++ +G + IG Y Q+ P E+ +LL MIGAI++ + + Sbjct: 118 ALNIIPQGVELPAREIGLALIGTEKY-QFVLPFEVVSILLLACMIGAILIARKQK 171 >gi|290489884|gb|ADD31349.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Staphylea colchica] Length = 178 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++ + FVA L++YVGA+ + +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLIYVGAINILIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVFKG-----------NNV 131 K L + IG L VC S F+ + +++ NN Sbjct: 85 EYYKDFNLWTVGIGDGVTSL-VCTSIFVSLITIILDTSWYGIIWTTRSNQIIEQDLINNS 143 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + IG L T + P E+ ILL+S+IGAI + Sbjct: 144 QQIGIHLSTDFFLPFELISIILLVSLIGAIAM 175 >gi|290489878|gb|ADD31346.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Oxalis latifolia] Length = 176 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 22/150 (14%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 N IYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 NNTIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----SS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGEL----SRLVFKGNNVEN- 133 K L + GI L+VC S F++ S G + S + + N ++N Sbjct: 85 EYSKDFNLWTVGNGI---TLLVCISIFVLLITTIPDISWYGIIWTTRSNQIIEQNWIDNS 141 Query: 134 --IGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 142 QQIGIHLLTDFFLPFELISIILLVALIGAI 171 >gi|298674251|ref|YP_003726001.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Methanohalobium evestigatum Z-7303] gi|298287239|gb|ADI73205.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methanohalobium evestigatum Z-7303] Length = 105 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 45/69 (65%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L S + I+ S L + R+ + + SLI + + AGL++LL A+F+ ++ ++VYVGAV Sbjct: 25 FALLSLIIILFSLLTIVSRDVVRAAISLIVSLFSVAGLYILLNAQFLGVVQVLVYVGAVG 84 Query: 68 VFFLFIIMM 76 V LF +M+ Sbjct: 85 VLILFGVML 93 >gi|118576849|ref|YP_876592.1| NADH-ubiquinone oxidoreductase, subunit J [Cenarchaeum symbiosum A] gi|118195370|gb|ABK78288.1| NADH-ubiquinone oxidoreductase, subunit J [Cenarchaeum symbiosum A] Length = 159 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 23/176 (13%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 M I S+ + +R+ IYS +L+ AG F LL + FVA+ + VYVG++ V LF Sbjct: 1 MTIGSAIAALEMRSLIYSSIALMGTLGGIAGFFFLLDSPFVALFQIAVYVGSIAVLILFT 60 Query: 74 IMMLDIDI---EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN- 129 +M++ ++ +V + R++ +G + + A I S R V +G Sbjct: 61 VMLVKRELIFTKVEDRRRRLAGVGLMLVFMTAVGGIFLDSGI----------RAVTEGGG 110 Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + +G T Y L + IL S+ G++VL +R+D+ + ++ Sbjct: 111 PVDFTEVGADFLTYYWPALILMALILAGSVTGSLVLA-------RREDVEDEQRAS 159 >gi|167042387|gb|ABZ07114.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [uncultured marine crenarchaeote HF4000_ANIW97P9] Length = 171 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 15/178 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 SLF + + + I+S+ + +R+ IY +L+ AG F+LL + FVA+ + VYV Sbjct: 3 DSLFLGI-AVLTIVSAIAALEMRSLIYGGIALMGTLGGIAGFFILLDSPFVALFQIAVYV 61 Query: 64 GAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 G++ V LF IM++ ++ + E K+R + GI +++ + ++F++ L Sbjct: 62 GSIAVLILFTIMLVKNELIFQKKEDPKRR------YAGIALMLILMISLGAVIFNS--GL 113 Query: 122 SRLVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQD 175 S + + V+ IG+ Y L +L S+ GA++L R D +R D Sbjct: 114 SSITTEEPPVDYKEIGEDFLIYYWPALIAMALVLAGSITGAMILARRQDGVEDEQRTD 171 >gi|115605073|ref|YP_784525.1| NADH-plastoquinone oxidoreductase subunit 6 [Piper cenocladum] gi|122164316|sp|Q06GK8|NU6C_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|112253802|gb|ABI14523.1| NADH-plastoquinone oxidoreductase subunit 6 [Piper cenocladum] Length = 176 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ S V+ + N IYS FSL F V + ++L + FVA L++YVGA+ V +F +M Sbjct: 20 VLGSLGVILLTNTIYSAFSLGFVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVM 79 Query: 76 ML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 + D I S F ++ L + + ++ Sbjct: 80 FMKGSEYSNDFSIWTVGDGVTSLVCTSIFFSLITTILDTSWYGIIWTTRSNQIMEQDLL- 138 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +NV+ IG L T + P E+ +LL+++IGAI + Sbjct: 139 SNVQQIGIHLVTDFILPFELISIVLLVALIGAIAM 173 >gi|325126918|ref|YP_004286155.1| NADH-plastoquinone oxidoreductase subunit 6 [Fragaria vesca subsp. vesca] gi|324022830|gb|ADY15404.1| NADH-plastoquinone oxidoreductase subunit 6 [Fragaria vesca subsp. vesca] Length = 176 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 22/154 (14%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV NPIYS FSL V + ++LL + FVA ++YVGA+ V +F +M ++ Sbjct: 26 VVLFTNPIYSAFSLGLVLVCISLFYILLNSYFVAAAQFLIYVGAINVLIVFAVMFMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---------- 128 + L + GI L VC S F M+ + +++ Sbjct: 83 --GSEYYQDFNLWTVGAGI---TLPVCTSIFVLLMITITDTSWYGIIWTTRSNQIIEQDL 137 Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +N + IG L T + P E ILL+++IGAI Sbjct: 138 ISNSQQIGIHLSTDFFLPFEFISIILLVALIGAI 171 >gi|86152311|ref|ZP_01070522.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|88596684|ref|ZP_01099921.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|315124981|ref|YP_004066985.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840800|gb|EAQ58051.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|88191525|gb|EAQ95497.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|284926765|gb|ADC29117.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni IA3902] gi|315018703|gb|ADT66796.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315930445|gb|EFV09509.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 305] Length = 172 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + V +N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + F +M D Sbjct: 20 IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136 E E K + SFF ++ + +++ A + S + L+ N + + Sbjct: 80 KEFKEQLKAK---KSFFTLVVLSAILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++++Y E +LL++++ AIV L H+ K + Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIV--LTHKELTKEKQ 172 >gi|192293096|ref|YP_001993701.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodopseudomonas palustris TIE-1] gi|192286845|gb|ACF03226.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodopseudomonas palustris TIE-1] Length = 168 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 16/179 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SL A+IS+ + VT N ++++ L+ + A F LGA F A++ +++Y Sbjct: 1 MSSLLAIYAGAFALISAAVSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLIMIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SAEGE 120 GA++V F+F++M L I E R++ ++ + +L + LIV F F A G+ Sbjct: 61 AGAIVVLFVFVVMTLPISPESIT-RERALLRRAWPLPVLMSVLIVAPFVFGEFGLKAIGQ 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + + + +GK+L+ +A +E++ +L+ +IG R I R D S + Sbjct: 120 PAPV-----SAQEVGKLLFGPWALAVELASLLLMAGLIGV--------RHIGRNDRSPR 165 >gi|89073309|ref|ZP_01159839.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Photobacterium sp. SKA34] gi|89051019|gb|EAR56483.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Photobacterium sp. SKA34] Length = 177 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 87/182 (47%), Gaps = 7/182 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ FY S + ++++ ++ V+ P++ L + + A +F LLGA F+A + ++ Sbjct: 1 MLTWNIIFYASSAIMLLAAISLLFVKEPMHGAVYLTTSLLALAVIFYLLGAPFIAALQII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGA++V F+F IM+ + L + ++ E + ++ F A Sbjct: 61 LYVGAIMVLFVFFIMLSPASRTFPLTANRTVILPVILLTVMLVEAFIVLNHGHQFYAIET 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + K +G L+ Y +E +LL +++ V+ L + ++ + K++ Sbjct: 121 IKTISPKA-----VGADLFNHYKLAIEALSTLLLGALVA--VIYLAAQMKVRHSETDKKV 173 Query: 181 ES 182 E Sbjct: 174 ED 175 >gi|239980100|ref|ZP_04702624.1| putative NADH dehydrogenase chain J [Streptomyces albus J1074] gi|291451954|ref|ZP_06591344.1| predicted protein [Streptomyces albus J1074] gi|291354903|gb|EFE81805.1| predicted protein [Streptomyces albus J1074] Length = 216 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 42/69 (60%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + ++ L VT R +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 34 FLLVGLVTVGAAVLTVTTRQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVGSVV 93 Query: 68 VFFLFIIMM 76 V LF +M+ Sbjct: 94 VLLLFGLML 102 >gi|168700376|ref|ZP_02732653.1| hypothetical protein GobsU_12670 [Gemmata obscuriglobus UQM 2246] Length = 410 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 4/104 (3%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+ + F+LFS A++ ++V +NP + F ++ GLFLLL A F+ T+++ Sbjct: 68 VIGTALFWLFSAGALVFGTVLVVQKNPARGAIAFAFVILSVCGLFLLLAAPFLMAATVII 127 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF----FIGIL 101 Y GA+IV FLF++M+ R + GSF F+G++ Sbjct: 128 YAGAIIVTFLFVLMLSQAGTSNENDRTREPLYGSFAGFAFVGLV 171 Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 30/41 (73%), Gaps = 2/41 (4%) Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 NV N+G VLY+Q+ +E++G +LL+++IGA+ + HR+ Sbjct: 368 GNVRNLGFVLYSQHLLAVELAGTLLLVAVIGAVAIT--HRK 406 >gi|48478734|ref|YP_024341.1| NADH dehydrogenase subunit 6 [Saccharum hybrid cultivar SP-80-3280] gi|50812597|ref|YP_054698.1| NADH dehydrogenase subunit 6 [Saccharum officinarum] gi|118614545|ref|YP_899460.1| NADH-plastoquinone oxidoreductase subunit 6 [Sorghum bicolor] gi|75255217|sp|Q6ENP4|NU6C_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|75261504|sp|Q6L3D7|NU6C_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272344|sp|A1E9X7|NU6C_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|48478636|gb|AAT44656.1| NADH dehydrogenase subunit 6 [Saccharum hybrid cultivar SP80-3280] gi|49659581|dbj|BAD27362.1| NADH dehydrogenase ND6 subunit [Saccharum hybrid cultivar NCo 310] gi|118201179|gb|ABK79549.1| NADH-plastoquinone oxidoreductase subunit 6 [Sorghum bicolor] Length = 176 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 14/148 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85 Query: 86 PRKKRGF--LGSFFIGILAAEL------IVCASNFMVFSAEGELSRLVFKG--NNVENIG 135 K + + +G F +L + + +++ +++V +G NNV+ IG Sbjct: 86 WSKDKNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163 L T + P E+ ILL+S+IGAI + Sbjct: 146 IHLATDFYLPFELISLILLVSLIGAITM 173 >gi|11467258|ref|NP_043090.1| NADH dehydrogenase subunit 6 [Zea mays] gi|1171828|sp|P46621|NU6C_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|902287|emb|CAA60351.1| NADH dehydrogenase ND6 [Zea mays] Length = 176 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 14/148 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85 Query: 86 PRKKRGF--LGSFFIGILAAEL------IVCASNFMVFSAEGELSRLVFKG--NNVENIG 135 K + + +G F +L + + +++ +++V +G NNV+ IG Sbjct: 86 WSKDKNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163 L T + P E+ ILL+S+IGAI + Sbjct: 146 IHLATDFYLPFELISLILLVSLIGAITM 173 >gi|325610491|gb|ADZ36442.1| NADH dehydrogenase subunit 6 [Polyspora chrysandra] Length = 176 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 22/154 (14%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+ NPI S FSL FV + ++L + FVA L++YVGA+ V +F +M ++ D Sbjct: 26 VILFPNPISSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DS 84 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGN------- 129 E K L + GI + +VC S F+ + + +++ K N Sbjct: 85 E----YYKDFHLWTVGDGITS---MVCTSIFVSLISTILDTSWYGIIWATKSNQILEQDL 137 Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N + IG L T + P E+ ILL+++IGAI Sbjct: 138 ISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|240266491|ref|YP_002970846.1| NADH dehydrogenase subunit 6 [Arthroderma uncinatum] gi|237781107|gb|ACR19599.1| NADH dehydrogenase subunit 6 [Arthroderma uncinatum] Length = 201 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 44/71 (61%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 +F++II + +NPI SV LI F + +L+G F+ + L+VY+GAV + FL Sbjct: 23 AFISIIFGIYTIISKNPIVSVLFLIALFSTISVYLILIGLTFIGLSYLLVYIGAVSILFL 82 Query: 72 FIIMMLDIDIE 82 FI+M+++I I Sbjct: 83 FILMLINIRIS 93 >gi|13518490|ref|NP_084848.1| NADH dehydrogenase subunit 6 [Lotus japonicus] gi|23821907|sp|Q9BBP1|NU6C_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|13359031|dbj|BAB33248.1| NADH dehydrogenase ND6 [Lotus japonicus] Length = 176 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 22/161 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + NPI+S FSL V + L++L + FVA L++YVGA+ V +F +M Sbjct: 20 ILGSLGVVLLTNPIFSAFSLGLTLVCISLLYILSNSHFVAASQLLIYVGAINVLIIFGVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGNN 130 ++ + R +G L+VC S F+ + + + S + N Sbjct: 80 FMNGSEYYQDFRLWT--VGD------GMTLMVCTSIFISLITTIPDTSWYGIIWTTRSNQ 131 Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + IG L T + P E+ ILL ++IGAIV Sbjct: 132 IIEQDLISTSQQIGIHLSTDFFLPFELISIILLAALIGAIV 172 >gi|289809208|ref|ZP_06539837.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 69 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 38/55 (69%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 NP++++ L+ + + +G+F LGA F + ++VY GA++V F+F++MML++ Sbjct: 8 TNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLG 62 >gi|260677470|ref|YP_003208252.1| NADH-plastoquinone oxidoreductase subunit 6 [Coix lacryma-jobi] gi|209361408|gb|ACI43323.1| NADH-plastoquinone oxidoreductase subunit 6 [Coix lacryma-jobi] Length = 176 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 14/148 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VSGSE 85 Query: 86 PRKKRGF--LGSFFIGILAAEL------IVCASNFMVFSAEGELSRLVFKG--NNVENIG 135 K + + +G F +L + + +++ +++V +G NNV+ IG Sbjct: 86 WSKDKNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163 L T + P E+ ILL+S+IGAI + Sbjct: 146 IHLATDFYLPFELISLILLVSLIGAITM 173 >gi|320095558|ref|ZP_08027221.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon 178 str. F0338] gi|319977466|gb|EFW09146.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon 178 str. F0338] Length = 318 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 93/185 (50%), Gaps = 6/185 (3%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V +++ F + + + V+ + +S ++ + A L++ A F+ + +VV Sbjct: 14 VGEAVLFACTAVFMVACALGVLFFKKAAHSAVCMVGVMLGLAVLYIANNAPFLGVAQIVV 73 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGE 120 Y GA+++ FLF+IM++ I + RG + + +G L L VC + +V S A+ Sbjct: 74 YTGAIMMLFLFVIMLIGIGESDDYALQGRGRIIAAVLGGLG--LAVCVTAAVVHSTADAR 131 Query: 121 LSRLVFKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + V +N + ++ +L+ ++ +E++G +L+ + +GA+VL R + + D ++ Sbjct: 132 TAAPVDPYSNAPITDLAVMLFERHWLSMELAGGLLITAALGAMVLTHSDRL-VPKADQAQ 190 Query: 179 QLESN 183 S Sbjct: 191 TARSK 195 >gi|313679553|ref|YP_004057292.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oceanithermus profundus DSM 14977] gi|313152268|gb|ADR36119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oceanithermus profundus DSM 14977] Length = 156 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 33/171 (19%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++ + L VT + + + SL F AGL+LLLG+ +A I +V A+ Sbjct: 6 FYALAAFVLVFAILAVTTASMVRAALSLAITFFLIAGLYLLLGSPALAAIQFMVNASAIP 65 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + LFIIMM A PR + + + + FK Sbjct: 66 IMTLFIIMMTQSRAS-AGPRSWQ---------------------IVAGLLAAAAALVFFK 103 Query: 128 GN-----------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 GN + E +G L P E++ +LLL+M+GAIVL R Sbjct: 104 GNVGHGDGQITPVSPEALGVNLLQAALLPFEVASVLLLLAMVGAIVLARRR 154 >gi|309322198|ref|YP_003934113.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum] gi|197131414|gb|ACH47225.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum] gi|300069291|gb|ADJ66412.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum] Length = 176 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 22/149 (14%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------DI 79 N IYS FSL F+ + ++L + FVA L++YVGA+ + LF +M + D+ Sbjct: 31 NLIYSAFSLGLVFICISLFYILANSHFVAAAQLLIYVGAINILILFAVMFINGSEYSKDL 90 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-----ELSRLVFKG--NNVE 132 ++ + + F+ ++ SN + S G +++V K +N + Sbjct: 91 NLGIVRDGATSLVCTTLFLSLI--------SNILDTSWYGIIWTTRATQIVEKDLISNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IG+I Sbjct: 143 QIGIRLSTDFFLPFELISIILLVALIGSI 171 >gi|312233378|ref|YP_004021588.1| Nad6p [Candida jiufengensis] gi|268373365|gb|ACZ03937.1| Nad6p [Candida jiufengensis] Length = 163 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 I S +++ +P+ S+ +L+ FV+ A G + M +++YVGA+ + FLFI + Sbjct: 7 ICSTTALSLLSPVQSIVALMALFVSVAISLYSSGYITMGMTYILMYVGAIAILFLFITSL 66 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELI------VCASNF-MVFSAEGELSRLVFKGN 129 L+I+ K+ + + ++ +L+ V NF +V + G S + Sbjct: 67 LNIEYSYKGTFNKK-MVYVLLMCLMPLDLLYETFDTVENMNFDIVENMNGMYSTSSLQNW 125 Query: 130 NVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++E +G V YT+YA P I IL+LS++GAI + Sbjct: 126 DLELSTVGTVFYTEYAMPTMIMSLILVLSVMGAIAM 161 >gi|291515385|emb|CBK64595.1| NADH dehydrogenase subunit J [Alistipes shahii WAL 8301] Length = 169 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 25/164 (15%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 +S+ L VT R + + L+F AG++ L F+ + L++Y G + V ++F I++ Sbjct: 19 VSAILAVTTRRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLLIYAGGITVLYVFSILL 78 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILA--AELIVC-----ASNFMVFSAE-GELSRLVFKG 128 + AE K G+ F+G+ A A L +C +F+ E GEL Sbjct: 79 TSSQGDKAEDLK--GY--KLFVGLGAALASLGICLWITLRHDFLPSHFEHGEL------- 127 Query: 129 NNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHR 168 +V IG L + +Y Y P E+ +LL ++G I L+ R R Sbjct: 128 -HVRTIGHALMSSGKYGYILPFEVISLLLLACIVGGI-LIARKR 169 >gi|283956942|ref|ZP_06374414.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283791443|gb|EFC30240.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 172 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + V +N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + F +M D Sbjct: 20 IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136 E E K + SFF ++ + +++ A + S + L+ N + + Sbjct: 80 KEFKEQLKAK---KSFFTLVVLSAILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++++Y E +LL++++ AIV L H+ K + Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIV--LTHKELAKEKQ 172 >gi|295837074|ref|ZP_06824007.1| NADH dehydrogenase subunit [Streptomyces sp. SPB74] gi|197697181|gb|EDY44114.1| NADH dehydrogenase subunit [Streptomyces sp. SPB74] Length = 250 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 46/83 (55%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F LF + ++ + VT + +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 24 FVLFGLLTFGAALVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 83 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR 90 V LF +M+ I ++ R Sbjct: 84 VLLLFGLMLTRAPIGRSDEADSR 106 >gi|34500967|ref|NP_904152.1| NADH dehydrogenase subunit 6 [Amborella trichopoda] gi|75275903|sp|Q70XW1|NU6C_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|34481682|emb|CAD45159.1| NADH dehydrogenase ND6 subunit [Amborella trichopoda] Length = 177 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 26/164 (15%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + NPIYS FS V + +L + FVA L++YVGA+ V +F +M Sbjct: 20 ILGSLGVVLLTNPIYSAFSSGLVLVRISLFHILSNSYFVAAAQLLIYVGAINVLIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------- 128 ++ L + GI + +VC S ++FS + + G Sbjct: 80 FMN-----GSEYYNNFHLWTVGDGISS---VVCTS--ILFSLIATILDTSWYGIIWTTRS 129 Query: 129 ---------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +NV+ IG L T + P E+ ILL++++GAI + Sbjct: 130 NQIIEQDLTSNVQQIGIHLSTDFFLPFELISIILLVALVGAIAM 173 >gi|21222987|ref|NP_628766.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces coelicolor A3(2)] gi|256785900|ref|ZP_05524331.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24] gi|289769793|ref|ZP_06529171.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24] gi|10129700|emb|CAC08257.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces coelicolor A3(2)] gi|289699992|gb|EFD67421.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24] Length = 197 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVGAV+ Sbjct: 20 FLLVGLVTLAAAVVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGAVV 79 Query: 68 VFFLFIIMMLDIDI 81 V LF +M+ I Sbjct: 80 VLILFGLMLTRAPI 93 >gi|290489862|gb|ADD31338.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Berberidopsis corallina] Length = 176 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 26/152 (17%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL + + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLICISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 K L + G+ + +VC S F+ S + + G + Sbjct: 85 EYYKDFHLWTIGDGVTS---LVCTSIFV--SLITTIPDTSWYGIIWTTRSNQIIEQDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N + IG L T + P E+ ILL+++IGAI Sbjct: 140 NSQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|240266460|ref|YP_002970818.1| NADH dehydrogenase subunit 6 [Trichophyton mentagrophytes] gi|237781090|gb|ACR19583.1| NADH dehydrogenase subunit 6 [Trichophyton mentagrophytes] Length = 201 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 45/73 (61%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F++II + +NP+ SV LI F + +L+G F+ + L+VY+GAV + Sbjct: 21 ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSIL 80 Query: 70 FLFIIMMLDIDIE 82 FLFI+M+++I I Sbjct: 81 FLFILMLINIRIS 93 >gi|29126612|ref|NP_803515.1| NADH dehydrogenase subunit 6 [Monoblepharella sp. JEL15] gi|29029510|gb|AAO64960.1| NADH dehydrogenase subunit 6 [Monoblepharella sp. JEL15] Length = 193 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 8/103 (7%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 LV+ R+PI SV L ++ G+FLLL F+ + ++VYVGA+ + FLF I M+++ Sbjct: 20 LVIVSRSPINSVLFLCGLYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILFLFTIFMINVR 79 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + + LGSF + A L+ + + +F A+ S+ Sbjct: 80 LTLQ--------LGSFASPVAAILLLTGFAIYFIFFADLSFSQ 114 >gi|197131412|gb|ACH47224.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium macrorrhizum] Length = 176 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N IYS FSL F+ + ++L + FVA L++YVGA+ + LF +M ++ E ++ Sbjct: 31 NLIYSAFSLGLVFICISFFYILANSHFVAAAQLLIYVGAINILILFAVMFIN-GSEYSKD 89 Query: 87 RKKRGFLGSFFIGILAAELIVC-ASNFMVFSAEG-----ELSRLVFKG--NNVENIGKVL 138 R +G ++ L + SN + S G +++V K +N + IG L Sbjct: 90 FNLRT-VGDGVTSLVCTTLFLSLISNILDTSWYGIIWTTRATQIVEKDLISNSQQIGIRL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAI 161 T + P E+ ILL+++IGAI Sbjct: 149 STDFFLPFELISIILLVALIGAI 171 >gi|28261772|ref|NP_783285.1| NADH dehydrogenase subunit 6 [Atropa belladonna] gi|75248022|sp|Q8S8U6|NU6C_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|20068386|emb|CAC88099.1| NADH degydrogenase ND6 subunit [Atropa belladonna] Length = 176 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130 K L + GI + +VC S F+ S +S + G +N Sbjct: 86 YYKDFHLWTVGDGITS---MVCISLFI--SLITTISDTSWYGIIWTTRSNQIIEQDFLSN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL ++IGAI Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLDALIGAI 171 >gi|328884360|emb|CCA57599.1| NADH-ubiquinone oxidoreductase chain J [Streptomyces venezuelae ATCC 10712] Length = 182 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 20 FLLVGLVTLGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 79 Query: 68 VFFLFIIMMLDIDI---EVAEPRKK 89 V LF +M+ I A+ R K Sbjct: 80 VLLLFGLMLTKAPIGRSPDADSRNK 104 >gi|218176294|ref|YP_002364551.1| NADH-plastoquinone oxidoreductase subunit 6 [Festuca arundinacea] gi|215882378|gb|ACJ70808.1| NADH-plastoquinone oxidoreductase subunit 6 [Festuca arundinacea] Length = 160 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 14/132 (10%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMF----VNGSE 85 Query: 86 PRKKRGF--LGSFFIGILAAELI------VCASNFMVFSAEGELSRLVFKG--NNVENIG 135 K + + +G F I+ ++ + +++ +++V +G NNV+ +G Sbjct: 86 CSKDKNYWTIGDGFTSIVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQMG 145 Query: 136 KVLYTQYAYPLE 147 L T + P E Sbjct: 146 IHLATDFYLPFE 157 >gi|71057052|emb|CAJ18331.1| NADH dehydrogenase subunit 6 [Secale cereale] Length = 220 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 34/51 (66%) Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ ++ Sbjct: 61 TNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHGTTKVKRQDVFRR 111 >gi|139388966|ref|YP_001123692.1| NADH dehydrogenase subunit 6 [Lepidium virginicum] gi|221272329|sp|A4QLG2|NU6C_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286896|dbj|BAF50517.1| NADH dehydrogenase ND6 [Lepidium virginicum] Length = 176 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 26/151 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLFCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------NN 130 L + GI + +VC + ++FS + + G +N Sbjct: 90 FN----LWTVGNGITS---LVCTT--ILFSLLSTILDTSWYGVIWTTRLNQILEQDLISN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|319760608|ref|YP_004124546.1| NADH-quinone oxidoreductase subunit J [Candidatus Blochmannia vafer str. BVAF] gi|318039322|gb|ADV33872.1| NADH-quinone oxidoreductase subunit J [Candidatus Blochmannia vafer str. BVAF] Length = 189 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 51/89 (57%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+ ++I+++ V+ N ++S+ L+ + ++ + L A FV I ++VY Sbjct: 1 MMVVLFYISGCVSILATICVIFNNNTVHSLLYLVLSLLSVSLNLFSLKASFVGAIEVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91 GA++V FLF+IMMLDID K G Sbjct: 61 AGAIMVLFLFVIMMLDIDSVTINFDNKTG 89 >gi|11497584|ref|NP_054991.1| NADH dehydrogenase subunit 6 [Spinacia oleracea] gi|18203253|sp|Q9M3I8|NU6C_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|7636165|emb|CAB88787.1| NADH dehydrogenase ND6 subunit [Spinacia oleracea] Length = 176 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 24/161 (14%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ + VV NPI+S FSL V + ++L + FVA L++YVGA+ V +F +M Sbjct: 20 ILGALGVVLFTNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIYVGAINVLIIFSVM 79 Query: 76 MLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFM-----VFSAEGELSRLVFKGN 129 + + P + F L + G+ + +VC S F+ + + K N Sbjct: 80 FM------SGPEYDKKFQLWTVGDGVTS---LVCISLFVSLISTILNTSWYGIIWTTKSN 130 Query: 130 NV---------ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + + IG L T + P E+ ILL+S+IGAI Sbjct: 131 QILEQDLINASQQIGIHLSTDFFLPFELISIILLVSLIGAI 171 >gi|326777313|ref|ZP_08236578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] gi|326657646|gb|EGE42492.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] Length = 212 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 9/180 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 38 FLLVGLVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 97 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V LF +M+ I + P G AA + F + + Sbjct: 98 VLLLFGLMLTRAPIGRS-PDADSGNRWVALGVAAAAAAALVWVVVDAF----RTTWIDLD 152 Query: 128 G---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK-RQDISKQLESN 183 G + E G L+ + P E +LL +++GAIVL +H D R S + E + Sbjct: 153 GPAQGSTEVTGAFLFRNWVLPFEALSVLLLAALVGAIVLSRKHDTDTTVRPGPSGKEERS 212 >gi|296120539|ref|YP_003628317.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces limnophilus DSM 3776] gi|296012879|gb|ADG66118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces limnophilus DSM 3776] Length = 290 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 43/76 (56%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F +F+ + + +V +N + F L+ + +AAGLF LL A+F+A L+ Sbjct: 1 MTVLQFLFAVFASTTCLGAVMVALTQNIVRMAFWLMVSVASAAGLFFLLHADFLAAAQLL 60 Query: 61 VYVGAVIVFFLFIIMM 76 VY+G +V +F +M+ Sbjct: 61 VYLGGTVVILVFGVML 76 >gi|284034160|ref|YP_003384091.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Kribbella flavida DSM 17836] gi|283813453|gb|ADB35292.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kribbella flavida DSM 17836] Length = 277 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 91/176 (51%), Gaps = 8/176 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + + ++++ ++ VR ++S L + A + A F+ + ++VY GA++ Sbjct: 9 FWLLAPVMVLAAIAMILVRKAVHSALLLATVMICLAVQYAAQDAPFLFAVQIIVYTGAIL 68 Query: 68 VFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + FLF++M++ +D V R +R G F+G A L+V A V+ L + Sbjct: 69 MLFLFVLMLVGVDASDSLVETIRGQRLLAGLAFLGF--AVLVVFAVGNAVYGDPIGLGQA 126 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 GN + I ++L+ +Y + E++ +L+ + +GA +ML HR + R+ + L Sbjct: 127 QPDGNP-KGIAQLLFGKYVFAFEVTSALLITAAMGA--MMLAHRERLTRKKTQRDL 179 >gi|325210978|ref|YP_004286056.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium thurberi] gi|290775840|gb|ADD62336.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium thurberi] Length = 176 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 22/159 (13%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGA+ V LF +M ++ +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMN----GSE 85 Query: 86 PRKKRGF--LGSFFIGILAAELIVC-ASNFMVFSAEGEL----SRLVFKGN---NVENIG 135 K +G+ ++ ++V + + S G + S + + + N + IG Sbjct: 86 YYKDFNLWTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 L T + P E ILL+++IGAI D+ RQ Sbjct: 146 IHLATDFFLPFEFISIILLVALIGAI--------DVTRQ 176 >gi|91214192|ref|YP_538815.1| NADH dehydrogenase subunit 6 [Glycine max] gi|122202478|sp|Q2PMN5|NU6C_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|83595793|gb|ABC25174.1| NADH-plastoquinone oxidoreductase subunit 6 [Glycine max] Length = 176 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 22/161 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV NPI+S FSL V + ++L + FVA L++YVGA+ V +F +M Sbjct: 20 ILGSLGVVLFTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLIYVGAINVLIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-----VFSAEGELSRLVFKGNN 130 ++ + L + GI L+VC S F+ + + N Sbjct: 80 FMN-----GSEYYQDFRLWTVGDGI---TLMVCTSIFVSLITTILDTSWHGIIWTTRPNQ 131 Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + IG L T + P E+ ILL+++IGAIV Sbjct: 132 IIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIV 172 >gi|290489870|gb|ADD31342.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ficus sp. Moore 315] Length = 176 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V+ + L++L + FVA L++YVGA+ V +F +M ++ +E Sbjct: 30 NNPIYSAFSLGLVLVSISLLYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN----GSE 85 Query: 86 PRKKRGF--LGSFFIGILAAELIVCASNFMVF-------SAEG-----ELSRLVFKG--N 129 K +G+ F L++C S F + S G L++++ + Sbjct: 86 YYKDFNLWTVGNGF------TLLICTSIFGLLITTITDISWYGIIWTTRLNQIIEHDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 N + IG L T + P E ILL ++IGAI + Sbjct: 140 NSQQIGIHLSTDFFLPFEFISIILLAALIGAITV 173 >gi|116515046|ref|YP_802675.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256900|gb|ABJ90582.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 161 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 45/70 (64%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+LFSF+A+ S L++ N IYS+ LI + A +F +LG F+ ++ +++Y GA+ Sbjct: 5 FWLFSFLAVFFSILIMISINLIYSLIYLILLIFSIASIFCVLGLSFIGVLEVIIYAGAIT 64 Query: 68 VFFLFIIMML 77 V F+ I +++ Sbjct: 65 VLFILIAILM 74 >gi|282860767|ref|ZP_06269833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces sp. ACTE] gi|282564503|gb|EFB70039.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces sp. ACTE] Length = 251 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ + VT + +++ L+ A A +LLL AEF+A + +++YVG+++ Sbjct: 22 FLLVGIATLGAAVVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSIV 81 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V LF +M+ I R G+ ++ + A A ++V A + + Sbjct: 82 VLLLFGLMLTRAPIG----RSPDADSGNRWVALGVAVASAGALVWVVVDAF-RATWIDLD 136 Query: 128 G---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + G L+ + P E +LL +++GAIVL + +D K + S+ Sbjct: 137 GPAQGSTDVTGAFLFRNWVLPFEALSVLLLAALVGAIVLSRKADKDGKGPEASE 190 >gi|169794125|ref|YP_001718489.1| NADH dehydrogenase subunit 6 [Manihot esculenta] gi|221272332|sp|B1NWK2|NU6C_MANES RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|157695937|gb|ABV66206.1| NADH-plastoquinone oxidoreductase subunit 6 [Manihot esculenta] Length = 176 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 12/145 (8%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M + D Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136 ++ S F+ ++ I+ +++ + ++++ + +N + IG Sbjct: 90 FNLWTVGSGVTSLVCTSIFVSLIT---IIPDTSWYGIIWTTKTNQIIEQDLISNGQQIGI 146 Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161 L T + P E ILL+++IGAI Sbjct: 147 HLSTDFFLPFEFISIILLVALIGAI 171 >gi|126792910|gb|ABO27311.1| NADH dehydrogenase subunit 6 [Rhynchopsitta pachyrhyncha] Length = 170 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 21/159 (13%) Query: 9 YLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 Y +F+ + ++S LV + +P Y V L+F V G + LGA FV+++ +VY+G Sbjct: 3 YFLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F++ + + A+P + + G + +G A L+ + V+ G Sbjct: 63 MLVVFVYSVSL------AADPFPQA-WGGRYVVGY-ALGLVPIGAGLAVWGWGGG----- 109 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 FK + V+++G V L+ SG L S G + L+ Sbjct: 110 FKMDTVDSVGGVFVR-----LDFSGVALFYSCGGGMFLV 143 >gi|90579197|ref|ZP_01235007.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Vibrio angustum S14] gi|90440030|gb|EAS65211.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Vibrio angustum S14] Length = 177 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 49/76 (64%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ FY S + ++++ ++ V+ P++ L + + A +F LLGA F+A + ++ Sbjct: 1 MLTWNIIFYASSAIMLLAAISLLFVKEPMHGAVYLTTSLLALAVIFYLLGAPFIAALQII 60 Query: 61 VYVGAVIVFFLFIIMM 76 +YVGA++V F+F IM+ Sbjct: 61 LYVGAIMVLFVFFIML 76 >gi|110639003|ref|YP_679212.1| NADH:ubiquinone oxidoreductase subunit J [Cytophaga hutchinsonii ATCC 33406] gi|110281684|gb|ABG59870.1| NADH dehydrogenase subunit J [Cytophaga hutchinsonii ATCC 33406] Length = 172 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 49/80 (61%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F+ F+ + S+ +++ RN +Y+ +L+ + + A LF++ G++ +A++ LVVY Sbjct: 1 MIEIVFFFFAIQLLSSALVILFTRNVVYAAIALMSSLLGVAALFVIAGSDLLAVVQLVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIE 82 VG V++ LF ++ D E Sbjct: 61 VGGVLILLLFGVLYTYRDPE 80 >gi|57238583|ref|YP_179714.1| NADH dehydrogenase subunit J [Campylobacter jejuni RM1221] gi|57167387|gb|AAW36166.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni RM1221] gi|315059020|gb|ADT73349.1| NADH-ubiquinone oxidoreductase chain J [Campylobacter jejuni subsp. jejuni S3] Length = 172 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + V +N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + F +M D Sbjct: 20 IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79 Query: 81 IEVAEPRKKRGFLGSFF-IGILAAELIVC---ASNFMVFSAEGELSRLVFKGNNVENIGK 136 E E K + SFF + +L+A L++ + S + L+ N + + Sbjct: 80 KEFKEQLKAK---KSFFTLVVLSAILLLTMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++++Y E +LL++++ AIV L H+ K + Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIV--LTHKELTKEKQ 172 >gi|86152855|ref|ZP_01071060.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843740|gb|EAQ60950.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 172 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 10/159 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + V +N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + F +M D Sbjct: 20 IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCAS----NFMVFSAEGELSRLVFKGNNVENIGK 136 E E K + SFF ++ + +++ A + S + L+ N + + Sbjct: 80 KEFKEQLKAK---KSFFTLVVLSAILLLAMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++++Y E +LL++++ AI L H+ K + Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIT--LTHKELTKEKQ 172 >gi|169142682|ref|YP_001687109.1| NADH dehydrogenase subunit 6 [Polytomella capuana] gi|157429027|gb|ABV56561.1| NADH dehydrogenase subunit 6 [Polytomella capuana] Length = 144 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 14/122 (11%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 +V +P ++ I +++ + +LG EF+A++ +VYVGA+ V FLF++M++ + Sbjct: 18 IVLTTSPFMALMYSIVLYLDVQLILTMLGFEFMALVYALVYVGALAVLFLFVVMLIRV-- 75 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141 + FL L+ + + + + FSA+ + G ++ N G +LYT Sbjct: 76 ------QAAAFLS------LSTNVSMWVAGIIGFSADTTPRSWMIAGESLLNFGALLYTS 123 Query: 142 YA 143 YA Sbjct: 124 YA 125 >gi|167391857|ref|YP_001671735.1| NADH dehydrogenase subunit 6 [Carica papaya] gi|221272314|sp|B1A987|NU6C_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|166344184|gb|ABY86834.1| NADH-plastoquinone oxidoreductase subunit 6 [Carica papaya] Length = 176 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 24/150 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL F + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGFVLACISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN------GS 84 Query: 87 RKKRGF-LGSFFIGILAAELIVCASNFMVF-------SAEG-----ELSRLVFKG--NNV 131 R F L + GI + +VC S F+ S G L++++ + ++ Sbjct: 85 EYYRDFNLWTIGDGITS---LVCTSIFLSLITTILDTSWYGVIWTTRLNQILEQDLISSS 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 142 QQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|290489868|gb|ADD31341.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Euonymus americanus] Length = 176 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 22/150 (14%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL + A ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLICIALFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEG-----ELSRLVFKG--NNV 131 +L + G+ + +VC S F++ S G ++++ K N Sbjct: 85 EYHNAFYLWNAGGGVTS---LVCTSIFLLLITTIPDTSWYGIIWTTRSNQIIEKDLITNS 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 142 QQIGIRLSTDFFLPFELISIILLVALIGAI 171 >gi|302553483|ref|ZP_07305825.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces viridochromogenes DSM 40736] gi|302471101|gb|EFL34194.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces viridochromogenes DSM 40736] Length = 209 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 12/190 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ + VT R +++ L+ A +LLL AEF+A + +++YVG+V+ Sbjct: 20 FLLVGLVTFGAAIVTVTTRQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 79 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-----EGELS 122 V LF +M+ I + P G + +AA + F A +G + Sbjct: 80 VLLLFGLMLTRAPIGRS-PDADSGNRWAALTVAVAAAAALVWVVVDAFRATWIDLDGPAA 138 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + E G L+ + P E +LL +++GAIVL + + + S S Sbjct: 139 ------GSTEATGASLFQNWVLPFEALSVLLLAALVGAIVLSRKAKAEAATASGSTPSGS 192 Query: 183 NPDNSIVMVK 192 P S + + Sbjct: 193 TPAGSTPVTR 202 >gi|167752194|ref|ZP_02424321.1| hypothetical protein ALIPUT_00436 [Alistipes putredinis DSM 17216] gi|167660435|gb|EDS04565.1| hypothetical protein ALIPUT_00436 [Alistipes putredinis DSM 17216] Length = 169 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + + S+ L VT + + + L+F AG++ L F+ + L++Y G + Sbjct: 10 FTVLAVFTLASAVLAVTTKRILRAATFLLFVLFGTAGIYFQLNYSFLGAVQLLIYAGGIT 69 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVC-----ASNFMVFSAE-G 119 V ++F I++ + + AE K RG+ F +GILA A L +C F+ E G Sbjct: 70 VLYVFSILLTSSEGDKAE--KLRGY--KFVVGILATLAGLAICLFVTLRHQFLPEHFEHG 125 Query: 120 ELSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHR 168 EL+ V IG L + Y P E+ +LL ++G I L+ R R Sbjct: 126 ELA--------VREIGFALMSPEKQGYLLPFEVISLLLLACIVGGI-LIARKR 169 >gi|329938294|ref|ZP_08287745.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces griseoaurantiacus M045] gi|329302783|gb|EGG46673.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces griseoaurantiacus M045] Length = 215 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 43/74 (58%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 34 FLLVGLVTLGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 93 Query: 68 VFFLFIIMMLDIDI 81 V LF +M+ I Sbjct: 94 VLLLFGLMLTRAPI 107 >gi|91984046|ref|YP_567131.1| NADH dehydrogenase subunit 6 [Vitis vinifera] gi|122236488|sp|Q0ZIW5|NU6C_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|91701704|gb|ABE47588.1| NADH-plastoquinone oxidoreductase subunit 6 [Vitis vinifera] Length = 176 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 8/143 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPIYS FSL FV + ++ + FVA L++YVGA+ V +F +M + D Sbjct: 30 TNPIYSAFSLGLVFVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 ++ S F ++ L + + ++ N+ + IG L Sbjct: 90 FNLWTVGDGVTSVVCTSIFASLITTILDTSWYGIIWTTRSNQIIEQDLISNS-QQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAI 161 T + P E+ ILL+++IGAI Sbjct: 149 STDFFLPFELISIILLVALIGAI 171 >gi|240266713|ref|YP_002970790.1| NADH dehydrogenase subunit 6 [Trichophyton rubrum] gi|237781081|gb|ACR19575.1| NADH dehydrogenase subunit 6 [Trichophyton rubrum] Length = 201 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 45/73 (61%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F++II + +NP+ SV LI F + +++G F+ + L+VY+GAV + Sbjct: 21 ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLIMIGLTFIGLSYLLVYIGAVSIL 80 Query: 70 FLFIIMMLDIDIE 82 FLFI+M+++I I Sbjct: 81 FLFILMLINIRIS 93 >gi|290489848|gb|ADD31331.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ehretia acuminata] Length = 176 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 8/142 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------DI 79 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M + D Sbjct: 31 NPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 + S FI ++ L + + ++ N+ + IG L Sbjct: 91 HLWTVGDGVTSMVCTSLFISLITTILDTSWYGIIWTTKSNQIIEQDLISNS-QQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAI 161 T + P E ILL+++IGAI Sbjct: 150 TDFFLPFEFISIILLVALIGAI 171 >gi|290489874|gb|ADD31344.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Heuchera sanguinea] Length = 176 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + NPIYS FSL V + ++ + FVA L++YVGA+ V +F +M ++ Sbjct: 26 VVLLTNPIYSAFSLGLVLVCISLFYISSNSHFVAAAQLLIYVGAINVLIIFAVMFMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---------- 128 K L + G+ + +VC S F + + +++ Sbjct: 83 --GSGSYKDFTLWTVGDGVTS---VVCTSIFVSLITIIPDTSWYGIIWTTRSNQIIEQDL 137 Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +N + IG L T + P E+ ILL+++IGAI Sbjct: 138 ISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|283795021|ref|YP_003359412.1| NADH dehydrogenase subunit 6 [Olea europaea] gi|330850796|ref|YP_004376474.1| NADH dehydrogenase subunit 6 [Olea europaea subsp. europaea] gi|281428740|gb|ADA69979.1| NADH dehydrogenase subunit 6 [Olea europaea] gi|291059307|gb|ADD72143.1| NADH-plastoquinone oxidoreductase subunit 6 [Olea europaea] gi|328795486|emb|CBR30368.1| NADH dehydrogenase subunit 6 [Olea europaea subsp. europaea] Length = 176 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 22/162 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + NPIYS FSL + ++L + FVA L++YVGA+ + +F +M Sbjct: 20 ILGSLGVVLLPNPIYSAFSLGLVLFCISLFYILSNSYFVAAAQLLIYVGAINILIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSR----LVFKGN- 129 + K L + G+ + IVC S F+ + + + S K N Sbjct: 80 FMS-----GSEYYKDFHLWTVGDGVTS---IVCTSLFISLITTIPDTSWYGIIWTTKSNQ 131 Query: 130 --------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 N + IG L T + P E+ ILL+++IGAI + Sbjct: 132 IIEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAI 173 >gi|46446202|ref|YP_007567.1| putative NADH-ubiquinone oxidoreductase chain J [Candidatus Protochlamydia amoebophila UWE25] gi|46399843|emb|CAF23292.1| putative NADH-ubiquinone oxidoreductase chain J [Candidatus Protochlamydia amoebophila UWE25] Length = 170 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 87/168 (51%), Gaps = 16/168 (9%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++F + +ISSF ++ PI + + A ++ A L++ L A+F+A + +++Y GA++V Sbjct: 11 WIFGILLLISSFGILLTSKPIQASLCFLLALLSLAALYVELSAQFIAAMQVLIYAGAILV 70 Query: 69 FFLFIIMML-----DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SAEGEL 121 F+F+I++ I VA+ + I ILA + A F+ + S Sbjct: 71 IFMFVIVLFQDAHNQIHQFVAQSKSS--------ISILAIAAFLLAFGFLSYYLSELSTS 122 Query: 122 SRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 ++ + +G ++G +LY + +P E I L++++GA+ + + R Sbjct: 123 TKSLPEGFGTAHSLGYLLYVNFFFPFEAVILIFLIAVVGALYIGRKER 170 >gi|290489864|gb|ADD31339.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Bulnesia arborea] Length = 176 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 22/162 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV N +YS FSL + L++ + FVA L++YVGA+ V +F +M Sbjct: 20 ILGSLGVVLFSNSMYSAFSLGLVLFCISLLYISSNSHFVAAAQLLIYVGAINVLIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVFKG---- 128 ++ +E K L +F GI + +VC S F + +++ Sbjct: 80 FMN----NSEYSKNFNIL-TFRNGITS---LVCISIFFSLVTTILDTSWYSIIWTTRSNH 131 Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 NN + IG L T + P E+ ILL+S+IGAI + Sbjct: 132 IIEQELINNSQQIGIHLSTDFFLPFELISIILLVSLIGAIAM 173 >gi|156598541|gb|ABU85528.1| NADH-plastoquinone oxidoreductase subunit 6 [Passiflora biflora] Length = 176 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV NPIYS FSL F V + ++L + FVA L++YVGA+ V LF +M ++ Sbjct: 26 VVLFTNPIYSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFTVMFMN--- 82 Query: 82 EVAEPRKKRG 91 P +G Sbjct: 83 ---GPEYSKG 89 >gi|3122566|sp|Q36836|NU6M_TRIRU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1017449|emb|CAA61356.1| ND6 [Trichophyton rubrum] Length = 203 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 45/73 (61%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F++II + +NP+ SV LI F + +++G F+ + L+VY+GAV + Sbjct: 21 ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLIMIGLTFIGLSYLLVYIGAVSIL 80 Query: 70 FLFIIMMLDIDIE 82 FLFI+M+++I I Sbjct: 81 FLFILMLINIRIS 93 >gi|197294162|ref|YP_002149782.1| NADH-plastoquinone oxidoreductase subunit 6 [Cicer arietinum] gi|221272317|sp|B5LMS3|NU6C_CICAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|197089850|gb|ACH41120.1| NADH-plastoquinone oxidoreductase subunit 6 [Cicer arietinum] Length = 176 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 22/161 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV + NPI+S FSL V + ++L + FVA L++YVGA+ + +F +M Sbjct: 20 ILGSLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLIYVGAINILIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVF--KGNN 130 ++ + + L + GI LIVC S F+ + +++ + N Sbjct: 80 FMN-----SSEYYQDFNLWTVGDGI---TLIVCTSIFVSLVTTIPDTSWYGIIWTTRPNQ 131 Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + IG L T + P E+ ILL+++IG IV Sbjct: 132 IIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGTIV 172 >gi|194442196|ref|YP_002038856.1| NADH dehydrogenase subunit 6 [Tomistoma schlegelii] gi|81295137|emb|CAH18641.1| NADH dehydrogenase subunit 6 [Tomistoma schlegelii] Length = 175 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 14/180 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF L S M ++ LV Y V SL+FA +++ GL + G F+ M+ L++Y Sbjct: 1 MGMTFFALSSLM-LVGVVLVSAGATTHYGVISLLFAALSSGGLLAVGGGSFMPMVVLLIY 59 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVC---ASNFMVFSAE 118 +G ++V F F + D E +G +G+ A L+V A M Sbjct: 60 LGGLLVVFTFCVGFTDDKYCEFWGVGASKG-----LVGVCGAGLMVVGYRAYKHMWMGVL 114 Query: 119 GELSRLV--FKGN-NVENIGKVLYTQYAYPLEI-SGFILLLSMIGAIVLMLRHRRDIKRQ 174 G S V + G+ + E +G L+ + + SG+ LL+ + + ++ HRR R Sbjct: 115 GGFSDAVENWSGDISDELLGASLFYLEGWGFVVLSGWALLIVLFTIMSIIRGHRRGALRS 174 >gi|182436713|ref|YP_001824432.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465229|dbj|BAG19749.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp. griseus NBRC 13350] Length = 228 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 39 FLLVGLVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 98 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V LF +M+ I P G AA + F + + Sbjct: 99 VLLLFGLMLTRAPIG-RSPDADSGNRWVALGVAAAAATALVWVVVDAF----RTTWIDLD 153 Query: 128 G---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G + E G L+ + P E +LL +++GAIVL +H D Sbjct: 154 GPAQGSTEVTGAFLFRNWVLPFEALSVLLLAALVGAIVLSRKHDTD 199 >gi|242278967|ref|YP_002991096.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio salexigens DSM 2638] gi|242121861|gb|ACS79557.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio salexigens DSM 2638] Length = 174 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 3/167 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F +++ + + + V + + ++ LI + + AG+++L+ A F+A + +++YVGAV Sbjct: 10 FVVYTLLILGGGCIAVGAHSLVRAMVGLISSLLGVAGMYMLMAAPFMAFMQILIYVGAVC 69 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F IM+ D E +R G + L V F++ + + + Sbjct: 70 VLIFFAIMLTQADDHGVEAGSRRP--GKSALAALTFIAPVFVIGFILIKFQPVSIHIPVE 127 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 +E IGK L Y E+ +LL +M GA++L + R+ Sbjct: 128 VPLIE-IGKGLLEDYPVAFELISVVLLAAMAGAVLLAFEQKGKKGRK 173 >gi|317046224|ref|YP_004072513.1| NADH dehydrogenase subunit 6 [Corynocarpus laevigata] gi|309252941|gb|ADO60361.1| NADH dehydrogenase subunit 6 [Corynocarpus laevigata] Length = 176 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 22/154 (14%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + N IYS FSL V A ++L + FVA L++YVGA+ V +F +M + Sbjct: 26 VVLLTNSIYSAFSLGLVLVCIALFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMK--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGEL----SRLVFKGN- 129 K L + G+ L+VC S F+ S G + S + + + Sbjct: 83 --GSEYSKDFPLWTVGSGV---TLLVCTSIFVSLINTILDTSWYGIIWTTRSNQILEQDL 137 Query: 130 --NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N + IG L T + P E+ ILL+++IGAI Sbjct: 138 ISNSQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|290489866|gb|ADD31340.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Cornus florida] Length = 176 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 22/150 (14%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 N I+S FSL V + ++L + FVA L++YVGA+ + +F +M ++ Sbjct: 30 NNTIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSRLVFKG-----------NNV 131 K +L + G+ + +VC S F+ + +++ NN Sbjct: 85 EYHKDFYLWTVGDGVTS---MVCTSIFVSLITTILDTSWYGIIWTTRSNQILEQDLINNS 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E+ ILL+++IGAI Sbjct: 142 QQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|307327970|ref|ZP_07607151.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces violaceusniger Tu 4113] gi|306886275|gb|EFN17280.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces violaceusniger Tu 4113] Length = 194 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ L VT + +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 24 FLLVGIATLGAAVLTVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVGSVV 83 Query: 68 VFFLFIIMMLDIDI 81 V LF +M+ I Sbjct: 84 VLLLFGLMLTKAPI 97 >gi|46202537|ref|ZP_00208557.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Magnetospirillum magnetotacticum MS-1] Length = 57 Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 30/45 (66%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLF 46 + +L FY+F+ +A+ S +V++ RNP++SV LI AF NA F Sbjct: 1 MFTALIFYMFAAIAVASGVMVISSRNPVHSVLWLILAFFNARACF 45 >gi|24213588|ref|NP_711069.1| NADH dehydrogenase (ubiquinone) chain J [Leptospira interrogans serovar Lai str. 56601] gi|24194380|gb|AAN48087.1| NADH dehydrogenase (ubiquinone) chain J [Leptospira interrogans serovar Lai str. 56601] Length = 233 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 52/212 (24%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q L F+LF+ + I+SS V+ NPI + L+ +F + A ++ ++ A F+A + L+VY Sbjct: 8 QLLLFFLFASVMILSSLGVIFHPNPITAAVLLVLSFFSLAAIYAVMNAIFIATMQLLVYA 67 Query: 64 GAVIVFFLFIIMMLDIDIEVA------EPRKKRGFLG-SFFIGIL---------AAELIV 107 GA++V +F++M+L + + +P KK +LG F+G+L +E V Sbjct: 68 GAIMVLVVFVLMLLSLRDDAPRFFIFEKPIKKLLYLGLVMFLGVLLITAVQDGIPSETTV 127 Query: 108 C---ASN----FMVFS-----------------------------AEGELSRLVFKGNNV 131 A N F+ +S E + +++ N Sbjct: 128 PIGYAQNKDGKFVGYSFQISKNIKQTNTKSTLETPKTTSENQNHVHEKDTDQIILTSGNT 187 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +G ++ +Y P E+ +LL +++GA+VL Sbjct: 188 AAVGSAMFLRYLLPFELISILLLAAVLGAVVL 219 >gi|297192747|ref|ZP_06910145.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces pristinaespiralis ATCC 25486] gi|197721066|gb|EDY64974.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces pristinaespiralis ATCC 25486] Length = 214 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 43/74 (58%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 21 FLLVGVVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 80 Query: 68 VFFLFIIMMLDIDI 81 V LF +M+ I Sbjct: 81 VLLLFGLMLTKAPI 94 >gi|170289769|ref|YP_001736585.1| NADH dehydrogenase subunit J [Candidatus Korarchaeum cryptofilum OPF8] gi|170173849|gb|ACB06902.1| NADH dehydrogenase subunit J [Candidatus Korarchaeum cryptofilum OPF8] Length = 160 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L S +A++SS L+V R+ +YS F L + + LF LLG +A+ LVVYVGA + Sbjct: 12 FLLSSALALVSSALIVFHRSIVYSAFFLSMLGIANSILFTLLGFPIIALFHLVVYVGAAV 71 Query: 68 VFFLFIIMMLDIDIEVAEP 86 F LF ++M+ + EP Sbjct: 72 TFILFSLVMMR-EAPTVEP 89 >gi|68164857|ref|YP_247653.1| NADH dehydrogenase subunit 6 [Cucumis sativus] gi|67511452|emb|CAJ00812.1| NADH dehydrogenase subunit VI [Cucumis sativus] Length = 176 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 22/160 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S V+ N IYS FSL V+ + ++L A+FVA L++YVGA+ V +F +M Sbjct: 20 ILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIYVGAINVLIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---- 128 + K L + G+ +VC S F M + +++ Sbjct: 80 FMK-----GSEYSKDFNLWTVGNGV---TFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQ 131 Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +N + IG L T + P E+ ILL ++IGAI Sbjct: 132 ILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAI 171 >gi|45658582|ref|YP_002668.1| NADH dehydrogenase I subunit J [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601826|gb|AAS71305.1| NADH dehydrogenase I J subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 233 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 52/212 (24%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q L F+LF+ + I+SS V+ NPI + L+ +F + A ++ ++ A F+A + L+VY Sbjct: 8 QLLLFFLFASVMILSSLGVIFHPNPITAAVLLVLSFFSLAAIYAVMNAIFIATMQLLVYA 67 Query: 64 GAVIVFFLFIIMMLDIDIEVA------EPRKKRGFLG-SFFIGIL---------AAELIV 107 GA++V +F++M+L + + +P KK +LG F+G+L +E V Sbjct: 68 GAIMVLVVFVLMLLSLRDDAPRFFIFEKPIKKLLYLGLVMFLGVLLITAVQDGIPSETTV 127 Query: 108 C---ASN----FMVFS-----------------------------AEGELSRLVFKGNNV 131 A N F+ +S E + +++ N Sbjct: 128 PIGYAQNKDGKFVGYSFQISKNIKQTNTKSTLETPKTTSENQNHVHEKDTDQIILTSGNT 187 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +G ++ +Y P E+ +LL +++GA+VL Sbjct: 188 AAVGSAMFLRYLLPFELISVLLLAAVLGAVVL 219 >gi|58578662|ref|YP_203288.1| NADH dehydrogenase subunit 6 [Herpestes javanicus] gi|57014066|gb|AAW32555.1| NADH dehydrogenase subunit 6 [Herpestes javanicus] Length = 175 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY FSLI A G+ L G F+ ++ ++Y+G ++V F + M AEP Sbjct: 25 SPIYGGFSLIVAGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAM------AAEP 78 Query: 87 -----RKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSRLVFKGNNV----- 131 + LG+ G+LA L+ C ++F G +V+ + Sbjct: 79 YPETWSSNKAVLGALITGVLAELLMACYILEDEDTEVIFGFNGAGDWVVYDTGDSGFFSE 138 Query: 132 ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 E +G LY+ + + ++G+ LL IG +V+M R + Sbjct: 139 EAMGIAALYSYGTWLVVVTGWSLL---IGVLVIMEITRGN 175 >gi|194132141|gb|ACF33395.1| NADH-plastoquinone oxidoreductase subunit 6 [Gonystylus bancanus] Length = 176 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 8/143 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M + D Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 +++ + S + ++ + + + ++ N+ + IG L Sbjct: 90 LNLWIVGDGVTSLVCTSILVSLITTIFDMSWYGIIWTTRSNQIIEQDLISNS-QQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAI 161 T + P E+ ILL+ +IGAI Sbjct: 149 STDFFLPFELISIILLVGLIGAI 171 >gi|122202878|sp|Q2QD38|NU6C_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|74027151|gb|AAZ94701.1| NADH dehydrogenase subunit 6 [Cucumis sativus] gi|115432853|gb|ABI97466.1| NADH-plastoquinone oxidoreductase subunit 6 [Cucumis sativus] gi|115498355|gb|ABI98797.1| NADH-plastoquinone oxidoreductase subunit 6 [Cucumis sativus] Length = 176 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 22/160 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S V+ N IYS FSL V+ + ++L A+FVA L++YVGA+ V +F +M Sbjct: 20 ILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIYVGAINVLIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELSRLVFKG---- 128 + K L + G+ +VC S F M + +++ Sbjct: 80 FMK-----GSEYSKDFNLWTVGNGV---TFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQ 131 Query: 129 -------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +N + IG L T + P E+ ILL ++IGAI Sbjct: 132 ILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAI 171 >gi|326909443|ref|YP_004327714.1| NADH dehydrogenase subunit 6 [Hevea brasiliensis] gi|308523557|gb|ADO33607.1| NADH dehydrogenase subunit 6 [Hevea brasiliensis] Length = 176 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 12/145 (8%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M + D Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136 ++ S F+ ++ I+ +++ ++++ + +N + IG Sbjct: 90 FNLWTVGSGVTSLVCTSIFVSLIT---ILPDTSWYGIIWTTRTNQIIEQDLISNGQQIGI 146 Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161 L T + P E ILL+++IGAI Sbjct: 147 HLSTDFFLPFEFISIILLVALIGAI 171 >gi|318077268|ref|ZP_07984600.1| NADH dehydrogenase I chain J [Streptomyces sp. SA3_actF] Length = 267 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 45/83 (54%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F LF + ++ + VT + +++ L+ A +LLL AEF+A + +++YVG+V+ Sbjct: 28 FVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 87 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR 90 V LF +M+ I ++ R Sbjct: 88 VLLLFGLMLTRAPIGRSDDADSR 110 >gi|318056641|ref|ZP_07975364.1| NADH dehydrogenase I chain J [Streptomyces sp. SA3_actG] Length = 267 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 45/83 (54%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F LF + ++ + VT + +++ L+ A +LLL AEF+A + +++YVG+V+ Sbjct: 28 FVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 87 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR 90 V LF +M+ I ++ R Sbjct: 88 VLLLFGLMLTRAPIGRSDDADSR 110 >gi|153004150|ref|YP_001378475.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. Fw109-5] gi|152027723|gb|ABS25491.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. Fw109-5] Length = 208 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 13/150 (8%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 RN +YS L+ A + A GL++ L A+FVA+ L+VY+G V+V LF +M+ +V Sbjct: 67 RNILYSALGLLMALLGAGGLYVFLSADFVAITQLLVYIGGVLVLVLFAVMLTSRITDVKV 126 Query: 86 PRKKRGFLGS---FFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142 G +G F + + + V + +IG T++ Sbjct: 127 SNTSFGPVGGALLFVAAAPVLLAVALLTPWAVRIPDA-------LAPTTASIGNAFLTRW 179 Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 P E++ +LL +++GA+V+ R+++K Sbjct: 180 LLPFEVASMVLLATLVGAVVI---ARKELK 206 >gi|302521255|ref|ZP_07273597.1| NADH dehydrogenase subunit I J [Streptomyces sp. SPB78] gi|302430150|gb|EFL01966.1| NADH dehydrogenase subunit I J [Streptomyces sp. SPB78] Length = 263 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 45/83 (54%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F LF + ++ + VT + +++ L+ A +LLL AEF+A + +++YVG+V+ Sbjct: 24 FVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 83 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR 90 V LF +M+ I ++ R Sbjct: 84 VLLLFGLMLTRAPIGRSDDADSR 106 >gi|94265857|ref|ZP_01289587.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta proteobacterium MLMS-1] gi|94269627|ref|ZP_01291516.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta proteobacterium MLMS-1] gi|93451145|gb|EAT02072.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta proteobacterium MLMS-1] gi|93453593|gb|EAT03989.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta proteobacterium MLMS-1] Length = 173 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 11/170 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F+ F + I + + N I +V L V AG++ LG+ F+A++ +++Y Sbjct: 10 LAGVVFFGFILLIIFGALVATNAVNLIRAVCGLALCLVGVAGIYYFLGSPFLALMQILIY 69 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVCASNFMVFSAE 118 GAV V +F +M+ AEP + F S + L L+ + F Sbjct: 70 AGAVCVAIVFAVML-------AEPAAVQRFHRSHPLAGPGAALTGALMAWGLAALAFKTS 122 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 +E +G+ + T + E+ ILLL+++G++VL R R Sbjct: 123 WPSPPQRLNDGALEEVGRAMMTTFVVSFELISLILLLAIVGSLVLARRGR 172 >gi|32480898|ref|NP_862808.1| NADH dehydrogenase subunit 6 [Calycanthus floridus var. glaucus] gi|75233676|sp|Q7YJT1|NU6C_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|32399434|emb|CAD28775.1| NADH dehydrogenase ND6 subunit [Calycanthus floridus var. glaucus] Length = 176 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + + FVA L++YVGAV V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 L + G+ + +VC S ++FS + + G + Sbjct: 85 EYSNDFHLWTVGDGVTS---LVCTS--ILFSLITTIWNTSWYGIIWTTRSNQIIEQDLTS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 NV+ IG L T + P E+ ILL ++IGAI + Sbjct: 140 NVQQIGIRLATDFYLPFELISIILLAALIGAIAM 173 >gi|148925718|ref|ZP_01809406.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni CG8486] gi|205355585|ref|ZP_03222355.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni CG8421] gi|145845728|gb|EDK22819.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni CG8486] gi|205346362|gb|EDZ32995.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni CG8421] Length = 172 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + V +N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + F +M D Sbjct: 20 IAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDAS 79 Query: 81 IEVAEPRKKRGFLGSFF-IGILAAELIVC---ASNFMVFSAEGELSRLVFKGNNVENIGK 136 E E K + SFF + +L+A L++ + S + L+ N + + Sbjct: 80 KEFKEQLKAK---KSFFTLVVLSAILLLTMLIGFKYQNISTDLPLNDPALFDFN-KQLAL 135 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++++Y E +LL++++ AI L H+ K + Sbjct: 136 AIFSKYLLAFEFIAILLLIALVCAIT--LTHKELTKEKQ 172 >gi|126792870|gb|ABO27287.1| NADH dehydrogenase subunit 6 [Orthopsittaca manilata] Length = 170 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 13/120 (10%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G ++V F++ + Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135 + A+P + G + + L+ F+V+ +G FK + V+++G Sbjct: 73 L------AADPFPQA--WGGWQVAGYVLGLVPVGVGFVVWGWDGG-----FKVDTVDSVG 119 >gi|300711695|ref|YP_003737509.1| NADH dehydrogenase subunit J [Halalkalicoccus jeotgali B3] gi|299125378|gb|ADJ15717.1| NADH dehydrogenase subunit J [Halalkalicoccus jeotgali B3] Length = 102 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+++ F LF+ + + SS VV VR+ ++ L A ++ A ++ L AEF+A + ++ Sbjct: 1 MVLETAAFVLFAGVTLASSLGVVLVRDVWHAALLLGVALLSVAIHYVTLTAEFLAAVQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91 VYVG V++ F +M+ D V R +G Sbjct: 61 VYVGGVLILITFAVMLTH-DETVEADRGAQG 90 >gi|311896695|dbj|BAJ29103.1| putative NADH-quinone oxidoreductase subunit J [Kitasatospora setae KM-6054] Length = 236 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VT R +++ L+ A A FLLL AEFVA + ++VY+G+VIV LF +M+ I Sbjct: 43 VTTRQLVHAALWLVVALGGLAVEFLLLTAEFVAWVQVLVYLGSVIVLVLFGLMLTRAPI 101 >gi|57168325|ref|ZP_00367459.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Campylobacter coli RM2228] gi|57020133|gb|EAL56807.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Campylobacter coli RM2228] Length = 171 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 6/98 (6%) Query: 13 FMAIISSFLVVTV--RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F ++ F +V V +N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + Sbjct: 10 FSVVVLGFFLVAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLY 69 Query: 71 LFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIV 107 F +M D E E R K+ F F + IL+A L++ Sbjct: 70 SFAMMFFDSSKEFKEKLRAKKSF---FLLVILSAVLLL 104 >gi|313199752|ref|YP_004021366.1| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao] gi|309321316|gb|ADO64859.1| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao] gi|328924831|gb|ADO64942.2| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao] Length = 176 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 22/150 (14%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGA+ V LF +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCAS---NFMVFSAEGELSRLVFKG-----------NNV 131 K L + G+ + +VC S + + + +++ +N Sbjct: 85 EYYKDFNLWTIGNGVTS---LVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNS 141 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + IG L T + P E ILL+++IGAI Sbjct: 142 QQIGIHLATDFFLPFEFISIILLVALIGAI 171 >gi|114804316|ref|YP_762313.1| NADH-plastoquinone oxidoreductase subunit 6 [Morus indica] gi|122166758|sp|Q09WW5|NU6C_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|78100368|gb|ABB21009.1| NADH-plastoquinone oxidoreductase subunit 6 [Morus indica] Length = 176 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + L++L + FVA L++YVGA+ V +F +M ++ +E Sbjct: 30 TNPIYSAFSLGLVLVCISLLYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN----GSE 85 Query: 86 PRKKRGF--LGSFFIGILAAELIVCASNF-MVFSAEGELSR----LVFKGN--------- 129 K +G+ F L++C S F ++ + + S + N Sbjct: 86 YYKDFNLWTVGNGF------TLLICTSIFGLLITTITDTSWYGIIWTTRSNQIIEHDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 N + IG L T + P E ILL ++IGAI + Sbjct: 140 NSQQIGIHLSTDFFLPFEFISIILLAALIGAITV 173 >gi|289066874|ref|YP_003434392.1| NADH-plastoquinone oxidoreductase subunit 6 [Vigna radiata] gi|259020061|gb|ACV90259.1| NADH-plastoquinone oxidoreductase subunit 6 [Vigna radiata] Length = 176 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 22/160 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV NPI+S FSL V + ++L + FVA L++YVGA+ V +F +M Sbjct: 20 ILGSLGVVFFTNPIFSAFSLGLVLVCVSLFYILSNSHFVAASQLLIYVGAINVLIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-----VFSAEGELSRLVFKGNN 130 ++ + + + GI L+VC S F+ + + N Sbjct: 80 FMN-----GSDYYQNFRVWTVGDGI---TLMVCTSIFLSQITTILDTSWHGIIWTTRPNQ 131 Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + + IG L T + P E+ ILL+++IGAI Sbjct: 132 ILEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|290958202|ref|YP_003489384.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces scabiei 87.22] gi|260647728|emb|CBG70833.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces scabiei 87.22] Length = 217 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 37 FLLVGLVTFGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 96 Query: 68 VFFLFIIMMLDIDI 81 V LF +M+ I Sbjct: 97 VLLLFGLMLTKAPI 110 >gi|239943532|ref|ZP_04695469.1| putative NADH dehydrogenase chain J [Streptomyces roseosporus NRRL 15998] gi|239989986|ref|ZP_04710650.1| putative NADH dehydrogenase chain J [Streptomyces roseosporus NRRL 11379] gi|291446999|ref|ZP_06586389.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces roseosporus NRRL 15998] gi|291349946|gb|EFE76850.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 41/69 (59%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG+++ Sbjct: 29 FLLVGLATLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSIV 88 Query: 68 VFFLFIIMM 76 V LF +M+ Sbjct: 89 VLLLFGLML 97 >gi|289571365|ref|ZP_06451592.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T17] gi|289545119|gb|EFD48767.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T17] Length = 119 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ S +A++ + VV N +YS L + A ++ A F+ ++ +VVY Sbjct: 17 EAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS 95 GAV++ FLF++M++ +D AE + GS Sbjct: 77 GAVMMLFLFVLMLIGVD--SAESTEGDAAAGS 106 >gi|240266527|ref|YP_002970874.1| NADH dehydrogenase subunit 6 [Arthroderma obtusum] gi|237781129|gb|ACR19620.1| NADH dehydrogenase subunit 6 [Arthroderma obtusum] Length = 202 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 44/73 (60%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + ++II + +NP+ SV LI F + +L+G F+ + L+VY+GAV + Sbjct: 22 ILALISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLILIGLTFIGISYLLVYIGAVSIL 81 Query: 70 FLFIIMMLDIDIE 82 FLFI+M+++I I Sbjct: 82 FLFILMLINIRIS 94 >gi|11466053|ref|NP_038212.1| NADH dehydrogenase subunit 6 [Pichia canadensis] gi|22654266|sp|P48927|NU6M_PICCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|11036341|dbj|BAA06567.2| NADH dehydrogenase subunit 6 [Pichia canadensis] Length = 207 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 34/50 (68%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 V NP+YS+ LI F+N A L+G ++++ ++VY+GA+ V FLFI+ Sbjct: 34 VSNPMYSILYLIILFINIAIYLYLIGISIMSLLYILVYIGAIAVLFLFIL 83 >gi|122894040|ref|YP_001004236.1| NADH-plastoquinone oxidoreductase subunit 6 [Ranunculus macranthus] gi|221272343|sp|A1XGT8|NU6C_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|85540854|gb|ABC70806.1| NADH-plastoquinone oxidoreductase subunit 6 [Ranunculus macranthus] Length = 177 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 12/149 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML---- 77 VV + NPI+S FSL V + + + FVA L++YVGA+ V +F +M + Sbjct: 26 VVLLTNPIFSAFSLGLVLVCTSLFYTPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSE 85 Query: 78 ---DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVE 132 D + S F+ ++ + +++ ++++ + NN + Sbjct: 86 YYSDFHLWTVGDGVTSLVCTSIFVSLITT---IPDTSWYGIVWTTRSNQIIEQDLINNSQ 142 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAI 161 IG L T + P E+ ILL+++IGAI Sbjct: 143 QIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|91208953|ref|YP_538987.1| NADH dehydrogenase subunit 6 [Gossypium hirsutum] gi|122201415|sp|Q2L958|NU6C_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|85687467|gb|ABC73679.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium hirsutum] Length = 176 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPIYS FSL V + ++L + FVA L++YVGA+ V LF +M + D Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 ++ S + ++ L + + ++ N+ + IG L Sbjct: 90 FNLWTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNS-QQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAI 161 T + P E ILL+++IGAI Sbjct: 149 ATDFFLPFEFISIILLVALIGAI 171 >gi|78042971|ref|YP_360251.1| proton-translocating NADH-quinone oxidoreductase subunit J [Carboxydothermus hydrogenoformans Z-2901] gi|77995086|gb|ABB13985.1| proton-translocating NADH-quinone oxidoreductase, J subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 169 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 89/169 (52%), Gaps = 9/169 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + +F+ I S+ VV +RN ++SV L FV A +L+L A F+A + LVVY GAV Sbjct: 9 FAIVAFLLIFSALGVVFMRNIVHSVLFLAATFVLMAVTYLMLDAGFLAGVQLVVYAGAVS 68 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVF 126 + +F +M+ + ++ + F G + + L+ +++V L+ R + Sbjct: 69 IMVVFAVML----TKRSDLHETNLFNRLTIPGAIISFLVFIGLSWVVVKTPWNLAERPLV 124 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + +++ ++ P E++ +LL+++IGAI+L L ++K Q Sbjct: 125 DPMAINKLADLMFGKFVIPFEVAAVLLLVALIGAIILAL----EVKPQK 169 >gi|224026047|ref|ZP_03644413.1| hypothetical protein BACCOPRO_02800 [Bacteroides coprophilus DSM 18228] gi|224019283|gb|EEF77281.1| hypothetical protein BACCOPRO_02800 [Bacteroides coprophilus DSM 18228] Length = 171 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 14/176 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + +Q + FY+ + + S L VT + + L+F ++ +LG F+ + L+ Sbjct: 3 ITLQEIVFYVVAAAIAVCSVLAVTTGKILRAATYLLFVLFGTGAIYGILGYTFLGAVQLM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ D ++ + + ++ A L++ F+V + G Sbjct: 63 VYAGGIVVLYVFSILLTQSDKDMKYRMNRAKLISVLLTTLVGAALVL----FLVLT-NGF 117 Query: 121 LSRLVFKGNN--VENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 ++ +G V IG L Q+ P E+ +LL MIG I++ R+D Sbjct: 118 ALNMIPQGVELPVREIGLSLTGTGKYQFILPFEVVSVLLLACMIGGILI---ARKD 170 >gi|262211481|gb|ACY35570.1| NADH dehydrogenase subunit 6 [Polytomella sp. SAG 63-10] Length = 145 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 40/73 (54%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV +P ++ I ++N + LG +F+A+I +VYVGA+ V FLF++MM+ I + Sbjct: 18 VVLTSSPFMALMYSILLYLNVQTILWSLGYDFMALIYALVYVGALAVLFLFVVMMVRIQV 77 Query: 82 EVAEPRKKRGFLG 94 + + L Sbjct: 78 STLSTKTVQAVLS 90 >gi|74310557|ref|YP_313641.1| NADH dehydrogenase subunit 6 [Epidermophyton floccosum] gi|58429685|gb|AAW78247.1| NADH dehydrogenase subunit 6 [Epidermophyton floccosum] Length = 199 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 38/60 (63%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 + +NP+ SV LI F + +L+G F+ + L+VY+GAV + FLFI+M+++I I Sbjct: 35 IVCKNPVISVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSILFLFILMLINIRIS 94 >gi|21228587|ref|NP_634509.1| NADH dehydrogenase subunit J [Methanosarcina mazei Go1] gi|20907081|gb|AAM32181.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] Length = 96 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ F L + + + + VV ++ + + +LI AGL++LL A+F+ +I ++VY Sbjct: 11 LETAVFGLLALVTVFFAIFVVIAKDVVRAGLALIMCMFGVAGLYILLNAQFLGVIQVLVY 70 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +GA+ V LF +M+ +I PR Sbjct: 71 IGAIGVLILFAVMLTKREIG-GGPRAN 96 >gi|284034102|ref|YP_003384033.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Kribbella flavida DSM 17836] gi|283813395|gb|ADB35234.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kribbella flavida DSM 17836] Length = 176 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 T R +++ L+ A AG F L AEFVA++ ++VYVGA++V LF +M+ Sbjct: 22 TSRRIVHAALWLVVALGAVAGCFGALHAEFVALVQILVYVGAIVVLVLFALML 74 >gi|302559056|ref|ZP_07311398.1| NADH dehydrogenase subunit [Streptomyces griseoflavus Tu4000] gi|302476674|gb|EFL39767.1| NADH dehydrogenase subunit [Streptomyces griseoflavus Tu4000] Length = 210 Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 41/69 (59%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 34 FLLVGLVTFGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 93 Query: 68 VFFLFIIMM 76 V LF +M+ Sbjct: 94 VLLLFGLML 102 >gi|294496243|ref|YP_003542736.1| hypothetical protein Mmah_1595 [Methanohalophilus mahii DSM 5219] gi|292667242|gb|ADE37091.1| hypothetical protein Mmah_1595 [Methanohalophilus mahii DSM 5219] Length = 90 Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 46/73 (63%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++L F++ + + I S V ++ + + +L+F+ AGLF+ L A+F+ ++ ++VYV Sbjct: 6 EALVFFILAAVVIFFSLAAVLSKDIVRAALALVFSMFTVAGLFITLNAQFLGVVQILVYV 65 Query: 64 GAVIVFFLFIIMM 76 GA+ V LF +M+ Sbjct: 66 GAIGVLILFAVML 78 >gi|60117148|ref|YP_209611.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum] gi|51339712|gb|AAU00626.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum] Length = 302 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM-MLDIDIEVAE 85 NPIYSV +LI F A + ++L EF+A I ++V VGAV V FLFIIM + +E+ + Sbjct: 25 NPIYSVLNLIIIFWCYACILIILDMEFLACIFILVNVGAVAVLFLFIIMMININIVEIKD 84 Query: 86 PRKK 89 KK Sbjct: 85 NLKK 88 >gi|283780915|ref|YP_003371670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula staleyi DSM 6068] gi|283439368|gb|ADB17810.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula staleyi DSM 6068] Length = 370 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 S F LF+ +A + V N + F L + +GLF L GAEFV + L++YV Sbjct: 25 HSTLFVLFALLACGFAIAVAASSNIVRMAFYLTLSLGATSGLFFLAGAEFVGAMQLMIYV 84 Query: 64 GAVIVFFLFIIMM 76 G +V +F +M+ Sbjct: 85 GGTLVLLIFGVML 97 >gi|240266722|ref|YP_002970902.1| NADH dehydrogenase subunit 6 [Microsporum canis] gi|237781138|gb|ACR19628.1| NADH dehydrogenase subunit 6 [Arthroderma otae] Length = 201 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 44/73 (60%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + ++II + +NP+ SV LI F + +L+G F+ + L+VY+GAV + Sbjct: 21 IIALISIILGIYTIISKNPVVSVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSIL 80 Query: 70 FLFIIMMLDIDIE 82 FLFI+M+++I I Sbjct: 81 FLFILMLINIRIS 93 >gi|302536207|ref|ZP_07288549.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sp. C] gi|302445102|gb|EFL16918.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sp. C] Length = 212 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ + VT + +++ L+ A A +LLL AEF+A + +++Y+G+V+ Sbjct: 32 FLLVGLATLGAAVITVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYLGSVV 91 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V LF +M+ I R G+ ++ + A A ++V A + + Sbjct: 92 VLLLFGLMLTKAPIG----RSPDADSGNRWVALGVAGAAGAALVWVVADAF-RTTWIDLD 146 Query: 128 G---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 G + + G++L+ + P E +LL ++IGAIVL R+ Sbjct: 147 GPAQGSTKVSGEILFQHWVLPFEALSVLLLAALIGAIVLSRRN 189 >gi|21689547|gb|AAL65277.1| NADH dehydrogenase subunit 6 [Polytomella parva] Length = 145 Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 40/73 (54%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV +P ++ I ++N + LG +F+A+I +VYVGA+ V FLF++MM+ I + Sbjct: 18 VVLTSSPFMALMYSILLYLNVQTILWSLGYDFMALIYALVYVGALAVLFLFVVMMVRIQV 77 Query: 82 EVAEPRKKRGFLG 94 + + L Sbjct: 78 STLSTKTIQSVLS 90 >gi|297159544|gb|ADI09256.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces bingchenggensis BCW-1] Length = 238 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 42/74 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + + + + + VT + +++ L+ A FLLL AEF+A + +++YVG+V+ Sbjct: 24 FLLVAVVTLGGAVVTVTTKQLVHAALWLVVTLGGLAVEFLLLTAEFIAWVQVLIYVGSVV 83 Query: 68 VFFLFIIMMLDIDI 81 V LF +M+ I Sbjct: 84 VLILFGLMLTKAPI 97 >gi|269128604|ref|YP_003301974.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Thermomonospora curvata DSM 43183] gi|268313562|gb|ACY99936.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermomonospora curvata DSM 43183] Length = 308 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 102/182 (56%), Gaps = 8/182 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F+L + +++ ++ +V +R ++S L ++ A L+ + A F+A + ++VY Sbjct: 22 EPVVFWLLAVVSVAAALGMVFLRKAVHSALMLAVVMLSLAVLYAVQDAPFLAFVQVIVYT 81 Query: 64 GAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCA-SNFMVFSAEG 119 GAV++ FLF++M++ + D V R +R + + G+ A L++ N + + G Sbjct: 82 GAVLMLFLFVLMLVGVSSTDSLVETIRGQR--IWAAIAGLGFAVLVISGLGNAALSDSMG 139 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK--RQDIS 177 + G NV+ + ++L+T+Y + E++ +L+ + +GA+VL R R K ++++S Sbjct: 140 LAAANAEAGGNVQGLARLLFTKYVFAFEVTSALLITAALGAMVLAHRERTSPKPTQKELS 199 Query: 178 KQ 179 K+ Sbjct: 200 KR 201 >gi|297201680|ref|ZP_06919077.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sviceus ATCC 29083] gi|197710947|gb|EDY54981.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sviceus ATCC 29083] Length = 248 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 42/74 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ + VT + +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 20 FLLVGLVTFGAAIVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVV 79 Query: 68 VFFLFIIMMLDIDI 81 V LF +M+ I Sbjct: 80 VLLLFGLMLTRAPI 93 >gi|290489846|gb|ADD31330.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Dillenia indica] Length = 176 Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 26/152 (17%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + ++ + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIFSAFSLGLVLVCISLFYISANSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 K L + GI + +VC S F+ S + + G + Sbjct: 85 EYYKDFHLWTIGDGISS---LVCTSIFV--SLITTIPDTSWYGIIWTTRSNQIIEQDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N + IG L T + P E+ ILL+++IGAI Sbjct: 140 NGQQIGIHLSTDFVLPFELISIILLVALIGAI 171 >gi|29831429|ref|NP_826063.1| NADH dehydrogenase I chain J [Streptomyces avermitilis MA-4680] gi|29608544|dbj|BAC72598.1| putative NADH dehydrogenase I chain J (complex I) [Streptomyces avermitilis MA-4680] Length = 207 Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ + VT + +++ L+ A +LLL AEF+A + +++YVG+V+ Sbjct: 29 FLLVGLVTFGAAIVTVTTKQLVHAALWLVATLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 88 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V LF +M+ I + + + + +A +V ++V A + L Sbjct: 89 VLLLFGLMLTKAPIGRSPDADSGNRWAALTVAVASAATLV----WVVVDAF-RTTWLDLN 143 Query: 128 G---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G + G L+ + P E +LL +++GAIVL + + D Sbjct: 144 GAAAGSTAVTGASLFQNWVLPFEALSVLLLAALVGAIVLSRKAKAD 189 >gi|305432366|ref|ZP_07401528.1| NADH-quinone oxidoreductase subunit J [Campylobacter coli JV20] gi|304444405|gb|EFM37056.1| NADH-quinone oxidoreductase subunit J [Campylobacter coli JV20] Length = 171 Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 6/98 (6%) Query: 13 FMAIISSFLVVTV--RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F ++ F +V V N +YS+ +L V +G + LL AEF+ +I ++VY GAV+ + Sbjct: 10 FSVVVLGFFLVAVLSTNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLY 69 Query: 71 LFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIV 107 F +M D E E R K+ F F + IL+A L++ Sbjct: 70 SFAMMFFDSSKEFKEKLRAKKSF---FLLVILSAVLLL 104 >gi|224483634|gb|ACN51358.1| NADH dehydrogenase subunit 6 [Saxicola torquata axillaris] gi|224483636|gb|ACN51359.1| NADH dehydrogenase subunit 6 [Saxicola torquata axillaris] Length = 172 Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 13/133 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MQFVLFLGVCF--VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F++ + + AEP + G + G++ L +C + F G + Sbjct: 60 LGGMLVVFVYSVSL------AAEPYPEA--WGDW--GVVGRGLGMCLVVMVGFMVGGGMD 109 Query: 123 RLVFKGNNVENIG 135 LV G V+N G Sbjct: 110 SLV-DGGTVDNGG 121 >gi|126792908|gb|ABO27310.1| NADH dehydrogenase subunit 6 [Nannopsittaca dachilleae] Length = 171 Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 17/149 (11%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++++ LV + +P Y V L+F V G F+ LGA F++++ +VY+G ++V F++ + Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135 + A+P + + G +G + ++ + +V+ GE F N +++G Sbjct: 73 L------AADPFPQV-WXGWRVVGYILGLVLALSVGCVVWGWGGE-----FGVNTADSVG 120 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLM 164 V + + L+ G L S+ G + LM Sbjct: 121 -VFFVR----LDFGGVALFYSLGGGLFLM 144 >gi|290489856|gb|ADD31335.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Nelumbo nucifera] Length = 176 Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++ + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 L + G+ + +VC S F FS + + G + Sbjct: 85 EYYNDFHLWTIGDGVTS---LVCTSIF--FSLITTILDTSWYGIIWTTRSNQIIEQDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 N + IG L T + P E+ ILL+++IGAI + Sbjct: 140 NGQQIGIHLSTDFFLPFELISIILLVALIGAIAM 173 >gi|317123854|ref|YP_004097966.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043] gi|315587942|gb|ADU47239.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043] Length = 304 Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust. Identities = 37/174 (21%), Positives = 91/174 (52%), Gaps = 11/174 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S FF++ + +A+ ++ +V R +++ + +L+ A+F+ ++ + VY Sbjct: 6 ESAFFWVLAPLAVAAALALVFARKAVHAAIGMAITMTILGVFYLMQKADFLGVVQVFVYT 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF------LGSFFIGILAAELIVCASNFMVFSA 117 GAV++ FLF+IM++ +D + +G L IG+L++ + +++F + Sbjct: 66 GAVMMLFLFVIMLVGVDSSDSLVETIKGHRWLSIILAVGLIGLLSS--TIGSASFDEATV 123 Query: 118 EGELSRLV---FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +L + N+ + ++++ QY + E++ +L+ + + A+VL R R Sbjct: 124 QSGIDKLEASNAQTGNITGMAELIFGQYVWIFEVTSALLITAALAAMVLAHRER 177 >gi|110227131|ref|YP_665609.1| NADH dehydrogenase subunit 6 [Populus alba] gi|134093259|ref|YP_001109560.1| NADH dehydrogenase subunit 6 [Populus trichocarpa] gi|122237031|sp|Q14FA5|NU6C_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272342|sp|A4GYW9|NU6C_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|109945569|dbj|BAE97257.1| NADH dehydrogenase subunit 6 [Populus alba] gi|133712121|gb|ABO36764.1| NADH-plastoquinone oxidoreductase chain 6 [Populus trichocarpa] Length = 176 Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPI+S FSL V + ++L + FVA L++YVGA+ V LF +M + D Sbjct: 30 TNPIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136 ++ S F+ ++ I+ + + ++++ + +N + IG Sbjct: 90 FNLWTVGNGLTSLICTSLFVLLIT---IISNTTWYGIIWTTRANQIIEQDLVSNGQQIGI 146 Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161 L T + P E ILL+++IGAI Sbjct: 147 HLSTDFFLPFEFISIILLVALIGAI 171 >gi|290489854|gb|ADD31334.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Meliosma aff. cuneifolia Moore 333] Length = 176 Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPI+S FSL V + + + FVA L++YVGA+ V LF +M + D Sbjct: 30 TNPIFSAFSLGLVLVCISLFHIPSNSHFVAAAQLLIYVGAINVLILFAVMFMSGSEYYND 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136 + S F+ ++ + +++ ++++ + NN + IG Sbjct: 90 FQLWTVGDGVTSLVCTSIFVSLITT---IPDTSWYGIIWTTRSNQIIEQDLINNSQQIGI 146 Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161 L T + P E+ ILL+++IGAI Sbjct: 147 HLSTDFFLPFELISIILLVALIGAI 171 >gi|48478478|ref|YP_024184.1| NADH dehydrogenase subunit J [Picrophilus torridus DSM 9790] gi|48431126|gb|AAT43991.1| NADH-quinone oxidoreductase chain J [Picrophilus torridus DSM 9790] Length = 84 Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 44/69 (63%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++F+ + +I SF+V++ + I+S L+ + +GLF+ LG FV + L+VY GA++ Sbjct: 8 FFIFAILLVILSFMVISSKKLIHSSIYLLIFLIIISGLFISLGLSFVGSVELLVYAGAIV 67 Query: 68 VFFLFIIMM 76 +F +M+ Sbjct: 68 TLLVFTLML 76 >gi|297570905|ref|YP_003696679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcanobacterium haemolyticum DSM 20595] gi|296931252|gb|ADH92060.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcanobacterium haemolyticum DSM 20595] Length = 330 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 4/75 (5%) Query: 10 LFSFMAI----ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LFS A+ ++ F ++ R + + S+I V A L+ L A F+ ++ +VVY GA Sbjct: 15 LFSVTAVGMVALAIFGLLITRKAVLTTLSVIGVMVGFAVLYTALEAPFMGVVQVVVYTGA 74 Query: 66 VIVFFLFIIMMLDID 80 +++ FLF++M++ +D Sbjct: 75 ILMMFLFVLMLIGVD 89 >gi|290489876|gb|ADD31345.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Liquidambar styraciflua] Length = 176 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 12/145 (8%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPI+S FSL V + ++ + FVA L++YVGA+ V +F +M + D Sbjct: 30 TNPIFSAFSLGLVLVCISLFYISSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSGYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136 +++ S F+ ++ + +++ ++++ + +N + IG Sbjct: 90 LNLWTVGDGVTSMVCTSIFVSLITT---IPDTSWYGIIWTTRSNQIIEQDLISNSQQIGI 146 Query: 137 VLYTQYAYPLEISGFILLLSMIGAI 161 L T + P E+ ILL+++IGAI Sbjct: 147 HLSTDFFLPFELISIILLVALIGAI 171 >gi|73658456|emb|CAI99038.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] Length = 145 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN 82 >gi|73658454|emb|CAI99036.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] Length = 145 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN 82 >gi|260887653|ref|ZP_05898916.1| NADH dehydrogenase I, J subunit [Selenomonas sputigena ATCC 35185] gi|330838012|ref|YP_004412592.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas sputigena ATCC 35185] gi|260862669|gb|EEX77169.1| NADH dehydrogenase I, J subunit [Selenomonas sputigena ATCC 35185] gi|329745776|gb|AEB99132.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas sputigena ATCC 35185] Length = 167 Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 16/162 (9%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + + + + VV + +++ L F+ A L+ LGA+F+ L++Y G V Sbjct: 10 FYLLAAVTLAGALGVVLAKKLVHAALLLTVTFIGIACLYFQLGADFLGAAQLMIYAGGVA 69 Query: 68 VFFLFIIMML-DIDIEVAEPRKKRGFLGS-----FFIGILAAELIVCASNFMVFSAEGEL 121 V + +M+ E P R F FF + +A + + M A Sbjct: 70 VLIVLGVMLTRHTPGEETSPDNARWFAAPVAAALFFAVVFSAVYVTPFAEVMEAPA---- 125 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 GN++E + ++ +Y E++ +LL +++GAIVL Sbjct: 126 ------GNSIEKLADLMLGEYVMTFELAAALLLAALVGAIVL 161 >gi|73670844|ref|YP_306859.1| NADH dehydrogenase subunit J [Methanosarcina barkeri str. Fusaro] gi|72398006|gb|AAZ72279.1| F420H2 dehydrogenase subunit J [Methanosarcina barkeri str. Fusaro] Length = 96 Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + + + VVT ++ + + +LI A L++LL A+F+ +I ++VY+GA+ Sbjct: 16 FWVLAISTVFFAVFVVTAKDIVRAGLALIMCMFGIAALYILLNAQFLGIIQVLVYIGAIG 75 Query: 68 VFFLFIIMMLDIDIEVAEPRKK 89 V LF +M+ +I EP + Sbjct: 76 VLILFAVMLTKHEIG-GEPGED 96 >gi|149390496|ref|YP_001294324.1| NADH-plastoquinone oxidoreductase subunit 6 [Illicium oligandrum] gi|221272326|sp|A6MMZ8|NU6C_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|147917449|gb|ABQ52573.1| NADH-plastoquinone oxidoreductase subunit 6 [Illicium oligandrum] Length = 177 Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NP+YS FSL V + + + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPVYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAINVLIVFAVMFMN------- 82 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 + + + +G LI C S ++FS + + G + Sbjct: 83 GSEYYNYFHLWTVGDGVTSLI-CTS--ILFSLIKTILDTSWYGIIWTTRSNQIIEQDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 NV+ IG L T + P E+ ILL++++GAI + Sbjct: 140 NVQQIGIHLSTDFYLPFELISIILLVALVGAIAM 173 >gi|302543402|ref|ZP_07295744.1| putative NADH dehydrogenase subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461020|gb|EFL24113.1| putative NADH dehydrogenase subunit [Streptomyces himastatinicus ATCC 53653] Length = 186 Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 39/64 (60%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 ++ + VT + +++ L+ A A +LLL AEF+A + +++YVG+V+V LF +M+ Sbjct: 34 AAVITVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVGSVVVLLLFGLMLT 93 Query: 78 DIDI 81 I Sbjct: 94 KAPI 97 >gi|49574628|ref|NP_848113.2| NADH dehydrogenase subunit 6 [Adiantum capillus-veneris] gi|68565793|sp|Q85FH2|NU6C_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|48476042|gb|AAP29444.2| NADH dehydrogenase subunit 6 [Adiantum capillus-veneris] Length = 197 Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 5/153 (3%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ S V + N + S FSL F + L+ +L A+FVA L+VYVGA+ V +F +M Sbjct: 20 LLGSLGAVLLVNTVNSAFSLGLVFTCISLLYFVLNADFVAAAQLLVYVGAINVLTVFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFL---GSFFIGILAAELIVCASNFMVFS--AEGELSRLVFKGNN 130 + D + G++ G+ I ++ + + S + +S G+N Sbjct: 80 ITDEPAGSETTARGIGYIITAGTCTILFSILSFVIHNTKWSDLSLIPQSGISTSGTLGSN 139 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 V+ +G L ++ P E+ +LL +++GAI L Sbjct: 140 VQQLGYKLLGEFVIPFELLSILLLAALVGAINL 172 >gi|146304648|ref|YP_001191964.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Metallosphaera sedula DSM 5348] gi|145702898|gb|ABP96040.1| NADH dehydrogenase subunit J [Metallosphaera sedula DSM 5348] Length = 166 Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 17/167 (10%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT---LVVYVG 64 F+LFS A+ ++ +V +N YS SL F ++ A L L E ++ + L++YVG Sbjct: 13 FFLFSIFALATALFIVNSKNVFYSAVSLAFLGISVAVLIADLDPEAYSLYSAFHLLLYVG 72 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSR 123 A +VF ++M +EV E R A L+ + F V + ++ Sbjct: 73 ATVVFLSISLVMFR-GLEVKEIRTPWA---------PAMALLSAVAFFAVLVLSTSSITP 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + N+ +G+ + +QY +P + LL +MI A+ L RRD Sbjct: 123 VQIQPLNLAVVGEKIVSQYWFPAVVLVIALLTTMIEALSL---ARRD 166 >gi|313184044|ref|YP_004021201.1| NADH-plastoquinone oxidoreductase subunit 6 [Castanea mollissima] gi|290489882|gb|ADD31348.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Quercus nigra] gi|309321571|gb|ADO65111.1| NADH-plastoquinone oxidoreductase subunit 6 [Castanea mollissima] Length = 176 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 26/156 (16%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + N IYS FSL V + ++L + VA L++YVGA+ V +F +M ++ Sbjct: 26 VVLLTNTIYSAFSLGLVLVCISLFYILSNSHLVAAAQLLIYVGAINVLIIFAVMFMN--- 82 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG------------- 128 +E K L + +G L++C F + A +S + G Sbjct: 83 -GSEYYKD---LNLWTVGD-GVTLLICTILFCLLMA--TISDTSWYGIIWTTRSNQIIEQ 135 Query: 129 ---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +N + IG L T + P E+ ILL ++IGAI Sbjct: 136 DLISNSQQIGIHLSTDFFLPFELISIILLAALIGAI 171 >gi|114329800|ref|YP_740618.1| NADH-plastoquinone oxidoreductase subunit 6 [Platanus occidentalis] gi|122165990|sp|Q09FZ3|NU6C_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|114054438|gb|ABI49832.1| NADH-plastoquinone oxidoreductase subunit 6 [Platanus occidentalis] Length = 176 Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPIYS FSL V + ++ + FVA L++YVGA+ V +F +M + D Sbjct: 30 TNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYND 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGK 136 + S F+ ++ I S + V ++++ + +N + IG Sbjct: 90 FHLWTVGDGVTSLLCTSIFVSLITT--IPDTSWYGVIWTTRS-NQIIEQDLISNGQQIGI 146 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVL 163 L T + P E+ ILL+++IGAI + Sbjct: 147 HLSTDFFLPFELISIILLVALIGAIAM 173 >gi|312183561|gb|ADQ42350.1| NADH:ubiquinone oxidoreductase J [Methanosaeta harundinacea] Length = 99 Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 11 FSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FS +A+I S L V RN ++S L+ +F A L++ L A FV + ++VY+GAV Sbjct: 19 FSLLAVIILGLSILTVYSRNIVHSGLYLLGSFAAVAALYIFLNATFVGVAQVLVYIGAVG 78 Query: 68 VFFLFIIMM 76 V LF IM+ Sbjct: 79 VLILFAIML 87 >gi|316935777|ref|YP_004110759.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rhodopseudomonas palustris DX-1] gi|315603491|gb|ADU46026.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodopseudomonas palustris DX-1] Length = 168 Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SL A+IS+ L VT N ++++ L+ + A F LGA F A++ ++VY Sbjct: 1 MSSLLAIYAGAFALISAALSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLILVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SAEGE 120 GA++V F+F++M L + E A R++ G++ + +L + LI+ F F +A G+ Sbjct: 61 AGAIVVLFVFVVMTLPVSPE-AITRERALLRGAWPVPLLMSVLIIAPFVFGEFGLTAAGQ 119 Query: 121 LSRLVFKGNNVENIGKVLYTQY 142 + + + + +GK+L+ + Sbjct: 120 PAPV-----SAQEVGKLLFGPW 136 >gi|310915125|emb|CBM41834.1| NADH dehydrogenase subunit 6 [Millerozyma farinosa] Length = 153 Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 16/152 (10%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 +SS L + + P+ S+ LI F + A G + M+ +++YVGA+ + FLF++ + Sbjct: 7 LSSLLAMGMLTPVQSILCLIILFTSTAMCLYSQGFVLMGMLYMLMYVGAMAMLFLFMLSL 66 Query: 77 LDIDIEVAEPRKKRG----FLGSFFIGILAAELIVC---ASNFMVFSAEGELSRLVFKGN 129 L +D P+ L + ++ +L+ S M+ E + LV GN Sbjct: 67 LKMD--APSPKGYHHVSPLLLTLMIVTLMPLDLLYSGMETSYGMMVEVENTYNELVVVGN 124 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 LYT+YA L ++G +L+LS++GAI Sbjct: 125 Q-------LYTEYAMLLVMTGLMLMLSVMGAI 149 >gi|329944211|ref|ZP_08292470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces sp. oral taxon 170 str. F0386] gi|328530941|gb|EGF57797.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces sp. oral taxon 170 str. F0386] Length = 331 Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust. Identities = 37/182 (20%), Positives = 88/182 (48%), Gaps = 6/182 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + + V+T + + + ++I ++ A L+++ + F+ + +VVY Sbjct: 30 EAIVFGVVALVTVACGIGVLTAKRAVTAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 89 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+ LF+IM++ + + EP G + + IL + +V+ A Sbjct: 90 GAVMTLVLFVIMLVGVGGD--EPVGAAGSVMRRPVLILLGLGLAGFLAAVVWRAALPTPA 147 Query: 124 LVFKGNNVEN--IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + G + LY + +E++ +L+++ +GA L L HR+ I+ + +++ Sbjct: 148 GLKDGAKAAPDLLAVTLYNDHVVTMELTAILLIVAAVGA--LTLTHRQRIRARLSQRRVA 205 Query: 182 SN 183 +N Sbjct: 206 AN 207 >gi|320009162|gb|ADW04012.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 40/69 (57%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L ++ + VT + +++ L+ A A +LLL AEF+A + +++YVG+V+ Sbjct: 22 FLLVGLATFGAAVVTVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVGSVV 81 Query: 68 VFFLFIIMM 76 V LF +M+ Sbjct: 82 VLLLFGLML 90 >gi|15866262|gb|AAL10291.1| NADH dehydrogenase subunit 6 [Gracula religiosa intermedia] Length = 82 Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ V + +P Y V L+ A V G + LG FVA++ ++VY+G ++V F++ + Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKRG 91 + A+P K G Sbjct: 73 L------AADPYPKAG 82 >gi|229577807|ref|YP_002836143.1| NADH-plastoquinone oxidoreductase subunit 6 [Megaleranthis saniculifolia] gi|226933935|gb|ACO92068.1| NADH-plastoquinone oxidoreductase subunit 6 [Megaleranthis saniculifolia] Length = 177 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + + + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIFSAFSLGLVLVCTSLFHIPSNSHFVAAAQLLIYVGAINVLIVFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 L + G+ + +VC S F+ S + + G N Sbjct: 85 EYYNDFHLWTVGDGVTS---LVCTSIFV--SLITTIPDTSWYGIIWTTRSNQILEQDLIN 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 N + IG L T + P E+ ILL+++IGAI + Sbjct: 140 NGQQIGIHLSTDFFLPFELISIILLVALIGAIAM 173 >gi|149390319|ref|YP_001294150.1| NADH-plastoquinone oxidoreductase subunit 6 [Chloranthus spicatus] gi|221272316|sp|A6MMH4|NU6C_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|146744239|gb|ABQ43311.1| NADH-plastoquinone oxidoreductase subunit 6 [Chloranthus spicatus] Length = 176 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 30/156 (19%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI S FSL V + ++ + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPISSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLIVFAVMFMN------- 82 Query: 86 PRKKRGFLGSFFIGILAAEL--IVCASNFMVFSAEGELSRLVFKG--------------- 128 + F + + +VC S ++FS + + G Sbjct: 83 ---GSEYYNDFHLWTIGDGFTSLVCTS--ILFSLITTIPDTSWYGIIWTTRSNQIIEQDL 137 Query: 129 -NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +NV+ IG L T + P E+ ILL+++IGAI + Sbjct: 138 TSNVQQIGIHLSTDFYLPFELISIILLVALIGAIAM 173 >gi|119714793|ref|YP_921758.1| NADH dehydrogenase subunit J [Nocardioides sp. JS614] gi|119535454|gb|ABL80071.1| NADH dehydrogenase subunit J [Nocardioides sp. JS614] Length = 275 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/176 (22%), Positives = 95/176 (53%), Gaps = 12/176 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + + +I++ ++ VR +++ L ++ A L+ L A F+ + ++VY GA++ Sbjct: 4 FWILAPVMVIAALGLLFVRKAVHAALLLAVVMMSLAVLYAALEAPFLFAVQIIVYTGAIL 63 Query: 68 VFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121 + FLF++M++ +D +E ++ + +G++ +++ S + +A G E Sbjct: 64 MLFLFVLMLVGVDASDSVVETIRGQRVLAAIAGLGLGLV---MVLGLSQISLGTAVGLED 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + G N++ + +L+++Y + E++ +L+ + +GA+VL R R K +S Sbjct: 121 AN---SGGNIQALANILFSRYVFAFEVTSALLITAAVGAMVLAHRERLTPKPTQMS 173 >gi|187250360|ref|YP_001874851.1| NADH dehydrogenase subunit 6 [Panthera pardus] gi|21310360|gb|AAM46196.1| NADH dehydrogenase subunit 6 [Panthera leo] gi|21310363|gb|AAM46198.1| NADH dehydrogenase subunit 6 [Panthera leo] gi|145558781|gb|ABP73307.1| NADH dehydrogenase subunit 6 [Panthera pardus] Length = 175 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F G+LA L C Sbjct: 85 SNKA-VLGAFITGVLAELLTAC 105 >gi|126792900|gb|ABO27306.1| NADH dehydrogenase subunit 6 [Pyrrhura picta] Length = 167 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G ++V F++ Sbjct: 10 VLASLLVASXPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 66 >gi|126792895|gb|ABO27303.1| NADH dehydrogenase subunit 6 [Cyanopsitta spixii] gi|126792898|gb|ABO27305.1| NADH dehydrogenase subunit 6 [Cyanopsitta spixii] Length = 170 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 26/171 (15%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G ++V F++ + Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 + D +V G++ +G + A + F+V+ G FK + V+ + Sbjct: 73 LAADPFPQVWGGWHAVGYV----LGFVPAGV-----GFVVWGWGGW-----FKVDTVDGV 118 Query: 135 GKVL-----------YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G +L Y+ A ++G+ LLL++ + L+ R + R Sbjct: 119 GVLLARLDLSGVALFYSCGAGMFLVAGWGLLLTLFVVLELVRGLSRGVIRA 169 >gi|290489860|gb|ADD31337.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Rhododendron simsii] Length = 177 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 36/57 (63%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 V+ + NPIYS FSL F + + ++L + FVA +++YVGA+ V +F +M ++ Sbjct: 26 VILLPNPIYSAFSLGLVFFSISFFYILSNSHFVAAAQILIYVGALNVLIIFAVMFMN 82 >gi|259019202|ref|YP_003204919.1| NADH dehydrogenase subunit 6 [Millerozyma farinosa] gi|257143763|emb|CAY39289.1| NADH dehydrogenase, subunit 6 [Millerozyma farinosa] Length = 146 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 21/151 (13%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAA------GLFLLLGAEFVAMITLVVYVGAVIVFF 70 +SS L + + P+ S+ LI FV+ A G F+L+G +V ++YVGA+ + F Sbjct: 7 MSSLLALGMLTPVQSITCLIVTFVSTAMSTYSEG-FILMGILYV-----LIYVGAIAILF 60 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 LFI+ +L+I+ K +G + + IL LI ++ + E + + Sbjct: 61 LFILSLLNIE------YKPQGSMKPIIVTILLVSLIPLDLSYETYGITTEFNTI---NEE 111 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + +G YT+YA L ++G IL++S++GAI Sbjct: 112 LWVVGVQFYTEYAILLLMTGLILMMSVMGAI 142 >gi|90425538|ref|YP_533908.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisB18] gi|90107552|gb|ABD89589.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisB18] Length = 155 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 26/131 (19%) Query: 59 LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 ++VY GA+IV F+F++M + E ++R L + + AA ++ A+ F+ E Sbjct: 46 IMVYAGAIIVLFVFVVMAVGTSPEAIA--RERAMLRRSW-PMPAAISVLVAAPFLFGIGE 102 Query: 119 GELSRLVFKGNN----VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 GN + +G++L+ +A+ +E++ F+LL +IG +RH Sbjct: 103 QA------PGNTAPIAAQAVGRLLFGPWAWAIELASFLLLAGLIG-----VRH------- 144 Query: 175 DISKQLESNPD 185 I + PD Sbjct: 145 -IGRDRAQEPD 154 >gi|163744628|ref|ZP_02151988.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Oceanibulbus indolifex HEL-45] gi|161381446|gb|EDQ05855.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Oceanibulbus indolifex HEL-45] Length = 279 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+ S +AI S + V V + I + F+L+ +F+ + LL+ A+++ + T+ + Sbjct: 1 MTDIAFYILSAIAIWSGWRVFRVDSMIRATFALMVSFICVGAIALLMSADYIGVATVFMM 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP----RKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 ++V LF++M + ++ P + R +G+ + + + V A++ Sbjct: 61 AVEMMVMGLFMVMFM-MNPAGLNPMQMVHQYRLSIGAGIVAFIGLTVAVLATDL------ 113 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + L + + ++G L E +G LL +M+GA++L R R Sbjct: 114 -PHNPLPAGRDTMRDLGINLLGSSMLIFETAGVTLLATMLGAVILSSRRGR 163 >gi|114330023|ref|YP_740704.1| NADH-plastoquinone oxidoreductase subunit 6 [Nandina domestica] gi|122165914|sp|Q09FQ7|NU6C_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|114054525|gb|ABI49918.1| NADH-plastoquinone oxidoreductase subunit 6 [Nandina domestica] Length = 176 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFHIPANSHFVAAAQLLIYVGAINVLIVFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----------------N 129 L + G+ + +VC S F+ S +S + G N Sbjct: 85 EYYNDFHLWTVGDGVTS---LVCTSIFV--SLITTISDTSWYGIIWTTRSNQIIEQDLIN 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + +G L T + P E+ ILL+++IGAI + Sbjct: 140 KGQQLGIHLSTDFFLPFELISIILLVALIGAIAM 173 >gi|126792912|gb|ABO27312.1| NADH dehydrogenase subunit 6 [Cyanoliseus patagonus] Length = 170 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 9 YLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 YL F+ + ++S LV + +P Y V L+F + G + LG FV+++ +VY+G Sbjct: 3 YLLVFLGVSFVLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGTSFVSLVLFMVYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F++ + + A+P + G + L+ + +V+ GE Sbjct: 63 MLVVFVYSVSL------AADPFPQA--WGGWHAMGYVLGLVPAGAGLVVWGWGGE----- 109 Query: 126 FKGNNVENIGK 136 FK + V+++G+ Sbjct: 110 FKVDVVDSVGE 120 >gi|187250387|ref|YP_001874812.1| NADH dehydrogenase subunit 6 [Uncia uncia] gi|145558806|gb|ABP73330.1| NADH dehydrogenase subunit 6 [Uncia uncia] Length = 175 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F G+LA L C Sbjct: 85 SNKA-VLGAFITGVLAELLTAC 105 >gi|167630270|ref|YP_001680769.1| proton-translocating NADH-ubiquinone oxidoreductase, chain j [Heliobacterium modesticaldum Ice1] gi|167593010|gb|ABZ84758.1| proton-translocating NADH-ubiquinone oxidoreductase, chain j [Heliobacterium modesticaldum Ice1] Length = 170 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-DID 80 VV +++ ++S L +F+ AG+++LL A+F+A + ++VY GAV + F +M+ Sbjct: 25 VVFLKDIVHSALLLAASFIGVAGIYVLLNADFLAAVQVLVYGGAVAILIAFGVMLTRRPH 84 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCA-----SNFMVFSAEGELSRLVFKGNNVENIG 135 ++ + G+F A +C + FM A + ++ I Sbjct: 85 MKETNANNRWVVWGAF---TAAFTFAICGWAIAFTPFMPIDASPA------QVTAIDGIA 135 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163 L + P E + +L +++IGAI+L Sbjct: 136 TQLLGDFVVPFEAAAILLTVALIGAIIL 163 >gi|292655143|ref|YP_003535040.1| NADH dehydrogenase-like complex subunit J1 [Haloferax volcanii DS2] gi|291372449|gb|ADE04676.1| NADH dehydrogenase-like complex subunit J1 [Haloferax volcanii DS2] Length = 86 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 52/85 (61%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV +++ F LF+ + + S VV VR+ +S L A ++ A +++L AEF+A + ++ Sbjct: 1 MVYETIAFALFALVTVGCSLGVVLVRDIWHSALLLGGALLSVAVHYVMLQAEFLAAMQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85 VYVG V++ F +M+ I+ EV+ Sbjct: 61 VYVGGVLILITFAVMLTRINPEVSS 85 >gi|139387497|ref|YP_001122850.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris] gi|221272341|sp|A4GGE9|NU6C_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|112031019|gb|ABH88131.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris] gi|158187182|gb|ABW22815.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris] Length = 176 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 22/160 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ S VV N I+S FSL V + ++L + FVA L++YVGA+ V +F +M Sbjct: 20 ILGSLGVVFFTNTIFSAFSLGLVLVCVSLFYILSNSHFVAASQLLIYVGAINVLIIFAVM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-----VFSAEGELSRLVFKGNN 130 ++ + + + GI L+VC S F+ + + N Sbjct: 80 FMN-----GSEYDQNFRVWTVGDGI---TLMVCTSIFISQINTILDTSWHGIIWTTRPNQ 131 Query: 131 V---------ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + + IG L T + P E+ ILL+++IGAI Sbjct: 132 ILEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAI 171 >gi|295065782|ref|YP_003587722.1| NADH dehydrogenase subunit 6 [Anomochloa marantoidea] gi|251765306|gb|ACT15460.1| NADH dehydrogenase subunit 6 [Anomochloa marantoidea] Length = 176 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 14/148 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + +LL + VA+ ++YVGA+ V L +M + +E Sbjct: 30 TNPIYSAFSLGLVLVCISLFYLLWNSYLVAVAQFLIYVGAINVLILLAVMF----VNSSE 85 Query: 86 PRKKRGF--LGSFFIGILAAEL------IVCASNFMVFSAEGELSRLVFKG--NNVENIG 135 K + + +G F ++ + + +++ +++V +G NN++ IG Sbjct: 86 WFKDQNYWTIGDGFTSLVCTTIPFSLMATIPDTSWYGILWTTRSNQIVEQGLNNNLQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVL 163 L T + P E+ ILL+S+IGAI + Sbjct: 146 IHLATDFYLPFELISLILLVSLIGAITM 173 >gi|212550779|ref|YP_002309096.1| NADH dehydrogenase I subunit J [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549017|dbj|BAG83685.1| NADH dehydrogenase I subunit J [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 173 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 24/169 (14%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LFS +A+ S+ L+ R+ Y L + AG +L L F+A + + VY G ++V Sbjct: 19 LFSILAVSSNSLL---RSATY----LFLVLLCTAGFYLFLNYHFLAAVQVSVYAGGIVVL 71 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFI---GILAAELIVCASNFMVFSA---EGELSR 123 F+F I + + EV + + S + GI + F+ + EG+ Sbjct: 72 FIFAIFLTNDKSEVLIKKWWQRCTMSVLVILGGIATTAFALLKHRFIYINKSMLEGD--- 128 Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168 + ++ IGK L QY P EI +LL +IGAI L+ R R Sbjct: 129 ---REIDMHLIGKALMGTGKYQYLLPFEILSLLLLACIIGAI-LIARKR 173 >gi|51245167|ref|YP_065051.1| NADH dehydrogenase, subunit 6 [Desulfotalea psychrophila LSv54] gi|50876204|emb|CAG36044.1| probable NADH dehydrogenase, subunit 6 [Desulfotalea psychrophila LSv54] Length = 177 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 8/108 (7%) Query: 43 AGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-IEVAEPRKK-RGFLGSFFIGI 100 AGL+ L + F++M+ +++Y+GAV + F +M+ D I+ +P K G +G G+ Sbjct: 51 AGLYFFLNSPFISMMQILIYIGAVSITISFGVMLASPDSIKKMQPIKPLAGPIGFAVSGM 110 Query: 101 LAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 LA L+ F+V A+ + + G ++ IG L TQY+ E+ Sbjct: 111 LAGALM-----FLVTRADWPIMAKITDG-SMRTIGIELLTQYSLVFEL 152 >gi|122891712|ref|YP_001004163.1| NADH dehydrogenase subunit 6 [Crocodylus siamensis] gi|82395897|gb|ABB72524.1| NADH dehydrogenase subunit 6 [Crocodylus porosus] gi|84682153|gb|ABC60415.1| NADH dehydrogenase subunit 6 [Crocodylus siamensis] Length = 175 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 41/71 (57%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L F+ ++S LV + Y V SL+FA + +GL + G F+ ++ L++Y+G ++ Sbjct: 5 FFLLCFLMMVSVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD 78 V F F + D Sbjct: 65 VVFAFCVGFTD 75 >gi|108802854|ref|YP_637151.1| NADH dehydrogenase subunit 6 [Crocodylus porosus] gi|81295123|emb|CAH18615.1| NADH dehydrogenase subunit 6 [Crocodylus porosus] Length = 175 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 41/71 (57%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L F+ ++S LV + Y V SL+FA + +GL + G F+ ++ L++Y+G ++ Sbjct: 5 FFLLCFLMMVSVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD 78 V F F + D Sbjct: 65 VVFAFCVGFTD 75 >gi|302345404|ref|YP_003813757.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella melaninogenica ATCC 25845] gi|302149226|gb|ADK95488.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella melaninogenica ATCC 25845] Length = 179 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 22/177 (12%) Query: 10 LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F+ +A+I S+ V+ + + +V +L+F AGL+ LL F+ + +Y G + Sbjct: 6 MFAVLAVIILASAVFCVSTKRIMRAVTALLFVLFGVAGLYFLLDYTFLGAAQISIYAGGI 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + ++F I ++ + KR FL +F L+ + +V L Sbjct: 66 TMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAFI------ALVGFGTVILVLLKNEVLRH 119 Query: 124 LVFKGNNVEN------IGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRRD 170 V G+++ N IG+ L T +Y Y P E LL +IG +V++ +++ Sbjct: 120 TVVNGDSLSNEVTMETIGRNLMTANKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 176 >gi|126792902|gb|ABO27307.1| NADH dehydrogenase subunit 6 [Nandayus nenday] Length = 170 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G ++V F++ + Sbjct: 13 VLASLLVASNPSPYYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEP-RKKRG 91 + A+P + RG Sbjct: 73 L------AADPFPQARG 83 >gi|164420816|ref|YP_001648636.1| NADH dehydrogenase subunit 6 [Hydra oligactis] gi|158668156|gb|ABW76614.1| NADH dehydrogenase subunit 6 [Hydra oligactis] Length = 185 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 48/73 (65%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF+ S + I S + + NPI+SVF L+ F + L + L EF++ + +++Y+GA+ Sbjct: 4 FFFFSSILIIFGSLMCINSLNPIHSVFWLVAIFFFSXTLLINLNLEFLSFLLIIIYIGAI 63 Query: 67 IVFFLFIIMMLDI 79 ++ FLF+IMMLDI Sbjct: 64 VILFLFVIMMLDI 76 >gi|1171836|sp|P43194|NU6M_BRABR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394662|emb|CAA52127.1| NADH dehydrogenase subunit 6 [Brachyramphus brevirostris] Length = 173 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G FL LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWFLSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|13508747|emb|CAC35123.1| NADH dehydrogenase subunit 6 [Muscicapa striata] gi|14268494|emb|CAC39396.1| NADH dehydrogenase subunit 6 [Muscicapa striata] Length = 172 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 26/172 (15%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVA 72 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135 + AEP + G++ L +C + A G L LV +G V++ G Sbjct: 73 L------AAEPYPEA----WADWGVVGHGLGMCLVIMIGIVAGGGLGCLVDEG-TVDSGG 121 Query: 136 -----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + Y+ A L I G+ LLL++ ++L R + R I Sbjct: 122 LSSLRMDFSGVAMFYSWGAGLLMIGGWGLLLTLF----VVLELVRGLSRGAI 169 >gi|290489886|gb|ADD31350.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Trochodendron aralioides] Length = 176 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 26/154 (16%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GS 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNF--------------MVFSAEGELSRLVFKG--N 129 L + G+ + +VC S F ++++A ++++ + + Sbjct: 85 EYYNDFHLWTVGDGVTS---LVCTSIFVSLITTIPDTSWYGIIWTARS--NQIIEQDLIS 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 N + IG L T + P E+ ILL+++IGAI + Sbjct: 140 NSQQIGIHLSTDFFLPFELISIILLVALIGAIAM 173 >gi|22536160|gb|AAN01230.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. grubii] Length = 160 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 27/36 (75%) Query: 47 LLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 +LLG FV + L+VYVGA+ + FLF++MML+I I Sbjct: 3 VLLGVGFVGISYLIVYVGAIAILFLFVVMMLNISIT 38 >gi|288801148|ref|ZP_06406604.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 299 str. F0039] gi|288332082|gb|EFC70564.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 299 str. F0039] Length = 174 Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 38/185 (20%) Query: 10 LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F +A+I S+ + VT + + + L+F AG++ LLG F+ + +Y G + Sbjct: 6 MFCILAVIILGSAIVCVTTKRIMRAATFLLFVLFGVAGIYFLLGYTFLGAAQISIYAGGI 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAELIVCASNFMVFSAEGEL 121 + ++F I++ R +G SF + G+L A +V F+V A+ E Sbjct: 66 TMVYIF-------AIQLVSKRTLQGLQESFSLKKSLGGVLVA--LVGLVMFLVIFAKNE- 115 Query: 122 SRLVFKGNNVE----------NIGKVL----YTQYAYPLEISGFILLLSMIGAIVLMLRH 167 F GN V+ +G L QYA P E+ LL +IG + M+ Sbjct: 116 ----FIGNVVDLGLANEVSMHEVGTTLIGTDKGQYALPFELISVFLLACIIGGV--MIAR 169 Query: 168 RRDIK 172 + D K Sbjct: 170 KEDKK 174 >gi|20090360|ref|NP_616435.1| NADH dehydrogenase subunit J [Methanosarcina acetivorans C2A] gi|19915365|gb|AAM04915.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina acetivorans C2A] Length = 96 Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 42/69 (60%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L +F+ + + VV ++ + + +LI A L++LL A+F+ +I ++VY+GA+ Sbjct: 16 FGLLAFVTVFFAIFVVIAKDVVRAGLALIMCMFGVAALYILLNAQFLGIIQVLVYIGAIG 75 Query: 68 VFFLFIIMM 76 V LF +M+ Sbjct: 76 VLILFAVML 84 >gi|73670843|ref|YP_306858.1| F420H2 dehydrogenase subunit [Methanosarcina barkeri str. Fusaro] gi|72398005|gb|AAZ72278.1| F420H2 dehydrogenase subunit [Methanosarcina barkeri str. Fusaro] Length = 83 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%) Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 +F + +L ++V + ++ EL + +N+E IG +++TQY P E+ +LL Sbjct: 8 AFLVVLLFTAIVVIGAFGTSWNTVSELPQSPADQSNIEGIGMLIFTQYVAPFEVLSIVLL 67 Query: 155 LSMIGAIVL 163 S+IGAI L Sbjct: 68 ASLIGAIYL 76 >gi|313199668|ref|YP_004021284.1| NADH-plastoquinone oxidoreductase subunit 6 [Isoetes flaccida] gi|291575397|gb|ADE18110.1| NADH-plastoquinone oxidoreductase subunit 6 [Isoetes flaccida] Length = 189 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 26/163 (15%) Query: 22 VVTVRNPIYS--VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 VV++ N +YS + +FA ++ +LLL A+FVA + + ++VGAV V + + + Sbjct: 27 VVSLTNIVYSAPLSGSVFACISPP--YLLLNADFVAAVQISIHVGAVNVSIVSAVTSTN- 83 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFSAEGELSRLVFKG----- 128 EP+ L ++ L +C S F ++ ++ +S +V G Sbjct: 84 -----EPQSFH--LSTYRTAGDGITLALCISLFFLPIIMILDTSWSRVSLIVLPGGIVEE 136 Query: 129 ---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 ++V+ IG L T P E+ +LL++++GAI R + Sbjct: 137 PLTDDVQRIGSHLLTDSLLPFELLSIVLLVALVGAITTARRGK 179 >gi|126640818|ref|YP_001083802.1| NADH dehydrogenase I chain J [Acinetobacter baumannii ATCC 17978] Length = 130 Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 29/43 (67%) Query: 47 LLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +++GA F + ++VY GA++V F+F++MML++ E +K Sbjct: 1 MIVGAPFAGALEIIVYAGAIMVLFVFVVMMLNLGQHTVEQERK 43 >gi|4761220|gb|AAD29282.1|AF113909_1 NADH dehydrogenase ND6 subunit [Suaeda japonica] Length = 146 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIYVGAINVLIIFSVMFMN-----GP 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 K L + GI + +VC S F++ ++ Sbjct: 85 EYDKNYHLWTVGDGITS---LVCTSLFVLLTST 114 >gi|168703223|ref|ZP_02735500.1| hypothetical protein GobsU_27071 [Gemmata obscuriglobus UQM 2246] Length = 191 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F + S+ VV R+ + L+F V + ++ LLGAEF L+ Sbjct: 1 MSLPVILFAVVGAATCASALGVVAARDVVRMAVWLLFTLVGVSLIYFLLGAEFAGAAQLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 VYVG +V +F + ML + E R +R Sbjct: 61 VYVGGTLVLVVFGV-MLTAHGPLRELRTRR 89 >gi|312233519|ref|YP_004021915.1| NADH dehydrogenase subunit 6 [Crocodylus palustris] gi|268370950|gb|ACZ02717.1| NADH dehydrogenase subunit 6 [Crocodylus palustris] gi|312227677|gb|ADQ52669.1| NADH dehydrogenase subunit 6 [Crocodylus palustris] Length = 175 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 12/174 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + +IS LV + Y V SL+FA + +GL + G F+ ++ L++Y+G ++ Sbjct: 5 FFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL--S 122 V F F + D ++ A K ++ +GI C N A G S Sbjct: 65 VVFAFCVGFTDDKYCELWGAGGSKVSAYVCGAGLGIGG----YCMYNSTWAEALGCFVDS 120 Query: 123 RLVFKGN-NVENIGKVLYTQYAYPLEI-SGFILLLSMIGAIVLML-RHRRDIKR 173 + G+ N E +G L+ + L I SG+ LL+ + ++L+ RHR ++ Sbjct: 121 VETWGGDMNNEFLGAGLFYLSGWGLLILSGWALLVVLFTIMILVRGRHRGALRS 174 >gi|239929558|ref|ZP_04686511.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672] gi|291437884|ref|ZP_06577274.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672] gi|291340779|gb|EFE67735.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672] Length = 255 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 40/69 (57%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + ++ + VT + +++ L+ A +LLL AEF+A + +++YVG+VI Sbjct: 34 FLLVGLVTFGAAVVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVI 93 Query: 68 VFFLFIIMM 76 V LF +M+ Sbjct: 94 VLLLFGLML 102 >gi|126792904|gb|ABO27308.1| NADH dehydrogenase subunit 6 [Aratinga aurea] Length = 167 Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 I +S LV + +P Y V L+F V G + LGA FV+++ +VY+G ++V F++ Sbjct: 10 IXASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 66 >gi|302327785|gb|ADL26986.1| NADH-quinone oxidoreductase, J subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 180 Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 27/182 (14%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +F+ ++++ V V+N + S LIF+FV A L++L+ AEF+A+ ++VYVG V+ Sbjct: 8 FYVVAFVILMTAVCCVAVKNILQSAVFLIFSFVTTAILYMLMHAEFIALAQVMVYVGGVV 67 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI---------------LAAELIVCASNF 112 +F +F I++ E A K +F + I LA+ ++ +++ Sbjct: 68 IFVVFTILLTSHLGEDAFTTKMPRIFTAFALSIAFVFVMVKCVLPTPDLASGIVNSPADY 127 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 S + RL+ GN+ + P EI +LL+++I AI + R + DI+ Sbjct: 128 S--SLQNFALRLL--GNDPNG--------FIIPFEIVSVLLLMTLICAITVARRSKEDIE 175 Query: 173 RQ 174 + Sbjct: 176 EE 177 >gi|126792890|gb|ABO27300.1| NADH dehydrogenase subunit 6 [Primolius auricollis] Length = 170 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|149390594|ref|YP_001294238.1| NADH-plastoquinone oxidoreductase subunit 6 [Buxus microphylla] gi|221272312|sp|A6MM90|NU6C_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|146762339|gb|ABQ45303.1| NADH-plastoquinone oxidoreductase subunit 6 [Buxus microphylla] Length = 176 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 8/149 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML---- 77 VV + NPI+S FSL + + + FVA L++YVGA+ V +F +M Sbjct: 26 VVLLTNPIFSAFSLGLVLFCISLFHIPSNSHFVAAAQLLIYVGAINVLIIFAVMFTNGSE 85 Query: 78 ---DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 D + S F+ ++ L + + ++ N + I Sbjct: 86 YYNDFHVWTVGDGVTSLVCTSIFVSLITTILDTSWYGIIWTTRSNQIIEQDLISNG-QQI 144 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVL 163 G L T + P E+ ILL+++IGAI + Sbjct: 145 GIHLSTDFFLPFELVSIILLVALIGAIAM 173 >gi|325126759|ref|YP_004285904.1| NADH dehydrogenase subunit 6 [Aratinga pertinax chrysogenys] gi|304365501|gb|ADM26311.1| NADH dehydrogenase subunit 6 [Aratinga pertinax chrysogenys] Length = 170 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|294630838|ref|ZP_06709398.1| NADH dehydrogenase subunit [Streptomyces sp. e14] gi|292834171|gb|EFF92520.1| NADH dehydrogenase subunit [Streptomyces sp. e14] Length = 142 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 39/69 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L ++ + VT + +++ L+ A +LLL AEF+A + +++YVG+V+ Sbjct: 20 FLLVGLATFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVV 79 Query: 68 VFFLFIIMM 76 V LF +M+ Sbjct: 80 VLLLFGLML 88 >gi|126792885|gb|ABO27297.1| NADH dehydrogenase subunit 6 [Anodorhynchus hyacinthinus] gi|126792888|gb|ABO27299.1| NADH dehydrogenase subunit 6 [Anodorhynchus hyacinthinus] Length = 170 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +++S LV + +P Y V LIF V G LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|261416725|ref|YP_003250408.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373181|gb|ACX75926.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 190 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 27/182 (14%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ +F+ ++++ V V+N + S LIF+FV A L++L+ AEF+A+ ++VYVG V+ Sbjct: 18 FYVVAFVILMTAVCCVAVKNILQSAVFLIFSFVTTAILYMLMHAEFIALAQVMVYVGGVV 77 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI---------------LAAELIVCASNF 112 +F +F I++ E A K +F + I LA+ ++ +++ Sbjct: 78 IFVVFTILLTSHLGEDAFTTKMPRIFTAFALSIAFVFVMVKCVLPTPDLASGIVNSPADY 137 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 S + RL+ GN+ + P EI +LL+++I AI + R + DI+ Sbjct: 138 S--SLQNFALRLL--GNDPNG--------FIIPFEIVSVLLLMTLICAITVARRSKEDIE 185 Query: 173 RQ 174 + Sbjct: 186 EE 187 >gi|27819341|ref|NP_777314.1| NADH dehydrogenase subunit 6 [Anser albifrons] gi|27764489|gb|AAO23052.1|AF363031_13 NADH dehydrogenase subunit 6 [Anser albifrons] Length = 173 Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 38/187 (20%) Query: 9 YLFSFMAIISSFLVVTVRN---PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 YL F+ I + V+ V + P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 3 YLMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSA---EGE 120 ++V F++ + + AEP G G + +I CA F +VF G Sbjct: 63 MLVVFVYSVAL------AAEPFP--GAWGDW-------RVIGCAVAFVAIVFGGLVFGGF 107 Query: 121 LSRLVFKGNNVENIG-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + F + V N+G + Y+ A ++G+ LLL++ ++L R Sbjct: 108 MGAWKFGVSTVNNVGVFVVRSDFSGVSMFYSHGAGMFLVAGWGLLLTLF----VVLELVR 163 Query: 170 DIKRQDI 176 + R I Sbjct: 164 GLSRGAI 170 >gi|255019947|ref|ZP_05292021.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus ATCC 51756] gi|254970606|gb|EET28094.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus ATCC 51756] Length = 166 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%) Query: 50 GAEFVAMITLVVYVGAVIVFFLFIIMML--DIDIEVAEPRKKRG 91 GA FVA + +++Y+GA++V FLF IM+L D + E R +RG Sbjct: 47 GAPFVAALEVILYLGAILVLFLFAIMLLRPDPEEETGARRFRRG 90 >gi|2660574|emb|CAA71361.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca] gi|2660576|emb|CAA71267.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca] gi|13508726|emb|CAC35111.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca] gi|13508729|emb|CAC35113.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca] gi|14268378|emb|CAC39329.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca] Length = 172 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A + G + LGA FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGASFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 73 L------AAEPYPE 80 >gi|322422405|ref|YP_004221834.1| NADH dehydrogenase subunit 6 [Ixobrychus cinnamomeus] gi|316891687|gb|ADU57296.1| NADH dehydrogenase subunit 6 [Ixobrychus cinnamomeus] Length = 173 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 23/171 (13%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LGA F++++ +VY+G ++V FL+ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGASFISLVLFLVYLGGMLVVFLYSVS 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVCASNFMVFSAEGEL--SRLVFKG 128 + D E + G+ F + G + L+ C + +V G++ +RL F G Sbjct: 73 LAADPFPEAWGDWRVVGYGVGFVLVCVMGAVIGGLVGCWKSSVVTVDAGDMFSTRLDFSG 132 Query: 129 NNV---ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + E +G L + G+ LLL++ ++L R + R I Sbjct: 133 VAMFYSEGVGMFL---------VGGWGLLLTLF----VVLELVRGLSRGAI 170 >gi|288803380|ref|ZP_06408813.1| NADH dehydrogenase I, subunit 6 [Prevotella melaninogenica D18] gi|288334200|gb|EFC72642.1| NADH dehydrogenase I, subunit 6 [Prevotella melaninogenica D18] Length = 174 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 22/177 (12%) Query: 10 LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F+ +A+I S+ V+ + + + +L+F AGL+ LL F+ + +Y G + Sbjct: 1 MFAVLAVIILASAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAAQISIYAGGI 60 Query: 67 IVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + ++F I ++ + KR FL +F L+ + +V L Sbjct: 61 TMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAFI------ALVGFGTVILVLLKNQVLRH 114 Query: 124 LVFKGNNVEN------IGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRRD 170 V G+++ N IG+ L T +Y Y P E LL +IG +V++ +++ Sbjct: 115 TVVNGDSLSNEVTMETIGRNLMTANKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 171 >gi|218157272|ref|YP_002364428.1| NADH dehydrogenase subunit 6 [Agapornis roseicollis] gi|166093081|gb|ABY82515.1| NADH dehydrogenase subunit 6 [Agapornis roseicollis] Length = 171 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 37/57 (64%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++++ LV + +P Y V L+F V A G + LGA F++++ +VY+G ++V F++ Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVY 69 >gi|49257002|dbj|BAD24801.1| NADH dehydrogenase subunit 6 [Varanus komodoensis] Length = 176 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+S +V + +P+Y V SL+F A G+ ++ G F++++ +VY+G +IV F + + Sbjct: 13 IVSGLMVSSNPSPLYGVVSLVFLAFLACGVLVVCGYSFLSLVLFLVYLGGMIVVFAYSVA 72 Query: 76 MLD-------IDIEVAEPRKKRGFLGSFFI 98 M +D V PR G +G F + Sbjct: 73 MASELRPEAWLDWSVL-PRFLGGLIGIFVV 101 >gi|38349487|ref|NP_941389.1| NADH dehydrogenase subunit 6 [Acinonyx jubatus] gi|33340793|gb|AAQ14963.1|AF344830_12 NADH dehydrogenase subunit 6 [Acinonyx jubatus] gi|38373510|gb|AAR19078.1| NADH dehydrogenase subunit 6 [Acinonyx jubatus] Length = 175 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG F G+LA L C Sbjct: 85 SNKA-VLGMFITGVLAELLTAC 105 >gi|188581794|ref|YP_001925239.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium populi BJ001] gi|179345292|gb|ACB80704.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium populi BJ001] Length = 335 Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 44/70 (62%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + +F+A+ + + T + S L+ +F+ AGLF+LL A+ + ++ +++Y+G + Sbjct: 10 FLVCAFVAVAGALGMTTTMSMFRSGIFLMASFIGVAGLFILLSADLIGLLQVMMYIGGFL 69 Query: 68 VFFLFIIMML 77 V LF+++++ Sbjct: 70 VMILFMVLVM 79 >gi|224474105|gb|ACN49296.1| Nad6p [Candida orthopsilosis] Length = 155 Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 24/157 (15%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAA-----GLFLLLGAEFVAMITLVVYVGAVIVFFL 71 ISS L + + +P+ S+ LI FV+AA F+L+G +V ++YVGA+ + FL Sbjct: 7 ISSILAIGLLSPVQSIVCLIALFVSAAISLYSNGFVLMGILYV-----LIYVGAIAILFL 61 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN- 130 FI+ +L+I+ +G + IL LI ++ + E + + N Sbjct: 62 FILSLLNIE------YNYKGTIHPLIFTILLICLIPLDLSYETYGIV-ENVNIAYPFNGL 114 Query: 131 ------VENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + +G +LYT+YA P+ G IL+LS+IGAI Sbjct: 115 LDWDLELSTVGTLLYTEYAIPMIFIGLILILSVIGAI 151 >gi|126792914|gb|ABO27313.1| NADH dehydrogenase subunit 6 [Bolborhynchus lineola] Length = 171 Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++++ LV + +P Y V L+F V G + LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|1085235|pir||S42246 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 6 - snow goose mitochondrion Length = 173 Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 35/166 (21%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77 Query: 87 RKKRGFLGSFFIGILAAELIVCASNF--MVFSA---EGELSRLVFKGNNVENIG------ 135 G G + +I CA F +VF G + F + V N+G Sbjct: 78 FP--GAWGDW-------RVIGCAVAFVAIVFGGLVFGGFMGAWKFGVSTVNNVGVFVVRS 128 Query: 136 -----KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + Y+ A ++G+ LLL++ ++L R + R I Sbjct: 129 DFSGVSMFYSHGAGMFLVAGWGLLLTLF----VVLELVRGLSRGAI 170 >gi|309322022|ref|YP_003935010.1| NADH dehydrogenase subunit 6 [Candida alai] gi|308746499|gb|ADO51034.1| NADH dehydrogenase subunit 6 [Candida alai] Length = 148 Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 43/69 (62%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S ++ I+S L + + +PI S+ LI F + A + G + ++ +++YVGA+ + FL Sbjct: 2 SIISGIASLLAIGILSPIQSILCLIIIFTSTAIYLYINGFILMGILYILIYVGAIAILFL 61 Query: 72 FIIMMLDID 80 FI+ +L+I+ Sbjct: 62 FIVSLLNIE 70 >gi|197935733|ref|YP_002213637.1| NADH dehydrogenase subunit 6 [Anser anser] gi|197131218|gb|ACH47164.1| NADH dehydrogenase subunit 6 [Anser anser] Length = 173 Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 35/166 (21%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77 Query: 87 RKKRGFLGSFFIGILAAELIVCASNF--MVFSA---EGELSRLVFKGNNVENIG------ 135 G G + +I CA F +VF G + F + V N+G Sbjct: 78 FP--GAWGDW-------RVIGCAVAFVAIVFGGLVFGGFMGAWKFGVSTVNNVGVFVVRS 128 Query: 136 -----KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + Y+ A ++G+ LLL++ ++L R + R I Sbjct: 129 DFSGVSMFYSHGAGMFLVAGWGLLLTLF----VVLELVRGLSRGAI 170 >gi|115523736|ref|YP_780647.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisA53] gi|115517683|gb|ABJ05667.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisA53] Length = 166 Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 10/109 (9%) Query: 59 LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 ++VY GA++V F+F+ M + D + A R++ S+ + AA I+ A+ F+ + Sbjct: 57 IIVYAGAIVVLFVFVAMTVGTD-DAAMERERDQLERSW--PMPAAISILVAAPFLFGIGD 113 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 S + + +G++L+ +A+ +E++ F+LL +IG +RH Sbjct: 114 PIPSHATPV--SAQAVGRLLFGPWAWAIELASFLLLAGLIG-----VRH 155 >gi|325298887|ref|YP_004258804.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides salanitronis DSM 18170] gi|324318440|gb|ADY36331.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides salanitronis DSM 18170] Length = 175 Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 15/173 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++ FY+ + + S L VT + + L+F A +F +LG F+ + L+VY Sbjct: 10 QNIVFYVVAAAIALCSVLAVTSGKLLRAATYLLFVLFGTAAIFFMLGYTFLGAVQLMVYA 69 Query: 64 GAVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 G +IV ++F I + D ++ + K R F +LA ++ A ++ G Sbjct: 70 GGIIVLYVFSIALTRSDKDMRYKISKARLF------SVLATTVVGAALVLLLLFTNGFAL 123 Query: 123 RLVFKGNNVEN-------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + G + + IG Y Q+ P E+ +LL MIG I++ + + Sbjct: 124 NAIPLGEELPSREVGMALIGTEKY-QFVLPFEVVSVLLLACMIGGILIARKEK 175 >gi|116329147|ref|YP_798867.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330245|ref|YP_799963.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121891|gb|ABJ79934.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123934|gb|ABJ75205.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 224 Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 51/207 (24%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q L F+LF+ + I+SS V+ N I + L+ +F + A ++ ++ A F+A + L+VY Sbjct: 8 QLLLFFLFASVMILSSLGVIFHPNAITAAVLLVLSFFSLAAIYAVMNAVFIATMQLLVYA 67 Query: 64 GAVI----------------------------VFFLFIIMMLDI---------------- 79 GA++ + +L ++M LD+ Sbjct: 68 GAIMVLVVFVLMLLSLREDDTKLFLFEKPIKKLLYLGLVMFLDVLLITAVQDGIPSENSP 127 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG---ELSRLVFKGNNVENIGK 136 I + R R SF I E F + ++G LV N +G Sbjct: 128 KIGYTKTRDGRSMDYSFTIHPRRPEY----KEFEEYKSKGLSIRPPSLVEVSGNTAVVGS 183 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVL 163 ++ +Y P E+ +LL +++G +VL Sbjct: 184 AMFLRYLLPFELISILLLAAVLGVVVL 210 >gi|108804465|ref|YP_644402.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rubrobacter xylanophilus DSM 9941] gi|108765708|gb|ABG04590.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rubrobacter xylanophilus DSM 9941] Length = 177 Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + M ++S+ VV R+ ++S + AF+ AG F++L +A +++YVGAV Sbjct: 5 FAFLTGMTLVSALGVVLSRSVVHSALFMSGAFLGVAGFFVMLNVPVLAAFQVLIYVGAVT 64 Query: 68 VFFLFIIM 75 V LF IM Sbjct: 65 VVILFGIM 72 >gi|218157328|ref|YP_002364480.1| NADH dehydrogenase subunit 6 [Todiramphus sanctus vagans] gi|166093123|gb|ABY82554.1| NADH dehydrogenase subunit 6 [Todiramphus sanctus vagans] Length = 173 Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + F I+ V + +P Y V L+ A V G L LG FVA++ +VY+G + Sbjct: 4 FMFFLGFCFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLNLGVSFVALVLFMVYLGGM 63 Query: 67 IVFFLF 72 +V F++ Sbjct: 64 LVVFVY 69 >gi|110346915|ref|YP_665734.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus] gi|82697223|emb|CAH18628.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus] gi|110083410|dbj|BAE97415.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus] Length = 175 Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ F +L M ++ LV Y V SL+FA V ++GL ++ G F+ ++ L++Y Sbjct: 1 MEIAFLFLCCLM-LVGVVLVAAGATTHYGVVSLLFAAVLSSGLLVVGGGSFMPIVVLLIY 59 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGIL 101 +G ++V F F + D + E +G G +G++ Sbjct: 60 LGGLLVVFAFCVGFTDDEYCEFWGTGASKGVAGVCGVGLM 99 >gi|126792916|gb|ABO27314.1| NADH dehydrogenase subunit 6 [Aratinga solstitialis] Length = 170 Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +++S LV + +P Y V L+F + G + LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|126792918|gb|ABO27315.1| NADH dehydrogenase subunit 6 [Enicognathus leptorhynchus] Length = 170 Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +++S LV + +P Y V L+F + G + LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|16797931|gb|AAL29218.1| NADH dehydrogenase subunit 6 [Pluvialis squatarola] Length = 173 Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ + V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGALAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVA 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV-----CASNFMVFSAEGELS--RLVFK 127 + D E + G+ G F+ +LA L++ C + +V G LS RL F Sbjct: 73 LAADPFPEAWGDWRVVGY-GVSFVLVLAVGLVIGGSVGCWKSGVVTVDSGGLSFVRLDFG 131 Query: 128 G 128 G Sbjct: 132 G 132 >gi|46205959|ref|ZP_00210109.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Magnetospirillum magnetotacticum MS-1] Length = 221 Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 43/70 (61%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F +F+A+ + + T + S L+ +F+ AGLF+LL A+ + ++ +++Y+G + Sbjct: 10 FATCAFVAVAGALGMTTTMSMFRSGIFLMASFIGVAGLFILLSADLIGLLQVMMYIGGFL 69 Query: 68 VFFLFIIMML 77 V LF+++++ Sbjct: 70 VMILFMVLVM 79 >gi|320532479|ref|ZP_08033302.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135309|gb|EFW27434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces sp. oral taxon 171 str. F0337] Length = 292 Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust. Identities = 36/169 (21%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + + V+T + + + ++I ++ A L+++ + F+ + +VVY Sbjct: 27 EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 86 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+ LF+IM++ + + EP G + + IL + A +V+ + L Sbjct: 87 GAVMTLVLFVIMLVGVGGD--EPVGAAGTVMRRPVLILLGLGLAGALTAVVWRS--TLPT 142 Query: 124 LVFKGNNVEN----IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 V N + + LY + +E++ +L+++ +GA+ L R R Sbjct: 143 PVGLKNGAKAAPDLLAVTLYHDHVVTMELTAILLIVAAVGALTLTHRQR 191 >gi|325067547|ref|ZP_08126220.1| NADH:ubiquinone oxidoreductase subunit J [Actinomyces oris K20] Length = 281 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 36/171 (21%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + + V+T + + + ++I ++ A L+++ + F+ + +VVY Sbjct: 27 EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 86 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+ LF+IM++ + + EP G + + IL + A +V+ + Sbjct: 87 GAVMTLVLFVIMLVGVGGD--EPVGAAGTVMRRPVLILLGLGLAGALTAVVWRSTLPTPA 144 Query: 124 LVFKGNNVEN--IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + G + LY + +E++ +L+++ +GA L L HR+ I+ Sbjct: 145 GLKDGAKAAPDLLAVTLYHDHVVTMELTAILLIVAAVGA--LTLTHRQRIR 193 >gi|187250374|ref|YP_001874864.1| NADH dehydrogenase subunit 6 [Panthera tigris] gi|313768487|ref|YP_004062164.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis] gi|78709126|gb|ABB48052.1| NADH dehydrogenase subunit 6 [Panthera tigris] gi|145558795|gb|ABP73320.1| NADH dehydrogenase subunit 6 [Panthera tigris] gi|301506369|gb|ADK77660.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis] gi|301506383|gb|ADK77673.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis] Length = 175 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGLGLIVAGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F G+LA L C Sbjct: 85 SNKA-VLGAFITGVLAELLTAC 105 >gi|108796794|ref|YP_636372.1| NADH dehydrogenase subunit 6 [Staurastrum punctulatum] gi|122211817|sp|Q32S04|NU6C_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|61393562|gb|AAX45703.1| subunit 6 of NADH-plastoquinone oxidoreductase [Staurastrum punctulatum] Length = 181 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 IYS L FV A L+LLL A+F+A +++YVGA+ V +F IM+++ E +K Sbjct: 36 IYSALFLGVVFVCVALLYLLLNADFLAAAQILIYVGAINVLIVFAIMLIN-KPETKINKK 94 Query: 89 KRGF---LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145 K F L F + L + LI+ N + +++ IG L T P Sbjct: 95 KITFGDILSGFSVFGLFSFLIIMILNTTWLQPTLVSQEVKNSFQSIDIIGIHLLTDLLLP 154 Query: 146 LEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 E+ +LL++++GAI I R++IS ++ Sbjct: 155 FELLSILLLVALVGAIT--------IARKEISPKI 181 >gi|258647049|ref|ZP_05734518.1| NADH dehydrogenase I, subunit 6 [Prevotella tannerae ATCC 51259] gi|260853164|gb|EEX73033.1| NADH dehydrogenase I, subunit 6 [Prevotella tannerae ATCC 51259] Length = 170 Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 42/73 (57%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F + + + + S+F V ++ I + L F + AG++ L+G F+ + ++VY Sbjct: 4 HNIMFVVLAVLMVFSAFATVLTKSIIRAATYLFFVLLGTAGMYFLMGYTFLGAVQVMVYA 63 Query: 64 GAVIVFFLFIIMM 76 G ++V ++F I++ Sbjct: 64 GGIVVLYVFAILL 76 >gi|126792879|gb|ABO27293.1| NADH dehydrogenase subunit 6 [Guaruba guarouba] Length = 170 Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +++S LV + +P Y V L+F V G + LG FV+++ +VY+G ++V F++ Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGTSFVSLVLFMVYLGGMLVVFVY 69 >gi|126792882|gb|ABO27295.1| NADH dehydrogenase subunit 6 [Guaruba guarouba] Length = 170 Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +++S LV + +P Y V L+F V G + LG FV+++ +VY+G ++V F++ Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGTSFVSLVLFMVYLGGMLVVFVY 69 >gi|219524130|ref|YP_002456280.1| NADH dehydrogenase subunit 6 [Manouria impressa] gi|149193526|gb|ABR21226.1| NADH dehydrogenase subunit 6 [Manouria impressa] Length = 174 Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 36/66 (54%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y VFSL+ + G+ + +G FV+++ +VY+G + Sbjct: 4 FMFLFGFCFVFWMIGVSCSSSPYYGVFSLVLGAASGCGVLVGMGGSFVSLVLFLVYLGGM 63 Query: 67 IVFFLF 72 +V F + Sbjct: 64 LVIFAY 69 >gi|5835217|ref|NP_008262.1|ND6_10685 NADH dehydrogenase subunit 6 [Felis catus] gi|1352592|sp|P48926|NU6M_FELCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1098535|gb|AAC48580.1| NADH dehydrogenase subunit 6 [Felis catus] Length = 175 Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGTGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 85 SNKA-VLAMFITGVLAELLTAC 105 >gi|126792893|gb|ABO27302.1| NADH dehydrogenase subunit 6 [Ara ararauna] Length = 170 Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 I++S LV + +P Y V L+F + G + LG+ FV+++ +VY+G ++V F++ Sbjct: 13 ILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGSSFVSLVLFMVYLGGMLVVFVY 69 >gi|312233191|ref|YP_004021415.1| NADH dehydrogenase subunit 6 [Phalacrocorax chalconotus] gi|312233192|ref|YP_004021416.1| NADH dehydrogenase subunit 6 [Phalacrocorax chalconotus] Length = 173 Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + A+P K Sbjct: 73 L------AADPYPK 80 >gi|126792873|gb|ABO27289.1| NADH dehydrogenase subunit 6 [Diopsittaca nobilis] gi|126792876|gb|ABO27291.1| NADH 6 [Diopsittaca nobilis] Length = 170 Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +++S LV + +P Y V L+F V G + LG FV+++ +VY+G ++V F++ Sbjct: 13 VLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|116754361|ref|YP_843479.1| NADH dehydrogenase subunit J [Methanosaeta thermophila PT] gi|116665812|gb|ABK14839.1| NADH dehydrogenase subunit J [Methanosaeta thermophila PT] Length = 96 Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + L V RN ++S LI +F A L++ L A F+ + ++VY+GAV V LF +M+ Sbjct: 28 AVLTVYSRNIVHSALYLIGSFAGVAALYISLNAPFLGVAQVLVYIGAVGVLILFAVML 85 >gi|312233106|ref|YP_004021088.1| NADH dehydrogenase subunit 6 [Crocodylus mindorensis] gi|268370964|gb|ACZ02730.1| NADH dehydrogenase subunit 6 [Crocodylus mindorensis] Length = 174 Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 25/180 (13%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L F+ +IS LV + Y V SL+FA + +GL + G F+ ++ L++Y+G ++V Sbjct: 5 FLLCFLMMISVVLVASGVTIHYGVVSLLFAAMFGSGLLAVGGGGFMPLVVLLIYLGGLLV 64 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN------FMVFSAEGE-- 120 F F + D K F G+ G VC S +M SA E Sbjct: 65 VFAFCVGFTD--------DKYCEFWGA---GGSKVSAYVCGSGLGVGGYYMYDSAWAEAL 113 Query: 121 ---LSRLVFKGNNV--ENIGKVLYTQYAYP-LEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + + G +V E +G LY + L +SG+ LL+ + ++L+ RR R Sbjct: 114 GCFVDAVEIWGGDVSSEFLGVGLYYLSGWGFLVLSGWALLVVLFTIMILVRGRRRGALRS 173 >gi|224483640|gb|ACN51361.1| NADH dehydrogenase subunit 6 [Saxicola rubicola] Length = 172 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 13/133 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MQFVLFLGVCF--VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F++ + + AEP + G + G++ L +C + G + Sbjct: 60 LGGMLVVFVYSVSL------AAEPYPEA--WGDW--GVVGHGLGMCLVVMVGIMVGGGMD 109 Query: 123 RLVFKGNNVENIG 135 LV G V++ G Sbjct: 110 SLV-DGGTVDSGG 121 >gi|2660580|emb|CAA71364.1| NADH dehydrogenase subunit 6 [Luscinia svecica] Length = 172 Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVLGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 73 L------AAEPYPE 80 >gi|313126881|ref|YP_004037151.1| NADH dehydrogenase subunit j [Halogeometricum borinquense DSM 11551] gi|312293246|gb|ADQ67706.1| NADH dehydrogenase subunit J [Halogeometricum borinquense DSM 11551] Length = 86 Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV +++ F LF+ + + S VV VR+ +S L A ++ A +++L AEF+A + ++ Sbjct: 1 MVYETIAFALFALITVGCSLGVVLVRDIWHSALLLGGALLSVAVHYVMLQAEFLAAMQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEP 86 VYVG V++ F +M+ +E + Sbjct: 61 VYVGGVLILVTFAVMLTRTRLEASST 86 >gi|189095565|ref|YP_001936271.1| NADH dehydrogenase subunit 6 [Aphrocallistes vastus] gi|150024083|gb|ABR58844.1| NADH dehydrogenase subunit 6 [Aphrocallistes vastus] Length = 188 Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 10/180 (5%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 ++ LV + R I V LI F+N + L +LL EF+A+ ++VYVGA+ + F+FIIM+ Sbjct: 11 LTRLLVTSSRRTINRVIWLILRFINTSLLLILLKLEFIAIFIIIVYVGAIAILFIFIIMI 70 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVE 132 L++ + + +K R L + I ++ R+ K N+E Sbjct: 71 LNLRNQ--KHKKSRNHLIPIRLIIRITLILHITEIIKKRKINNNQERISNKQIINLRNLE 128 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 I ++Y+ Y L I ILLL M+ AI++ + Q+I +QL + +I+ +K Sbjct: 129 IIRNLIYSNYCEWLIIRRAILLLRMLTAILISEKE----NTQNIKQQLFTQIQRTIITMK 184 >gi|1589126|prf||2210305M NADH dehydrogenase:SUBUNIT=6 Length = 781 Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 631 SPIYGGFGLIVAGGTGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 690 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 691 SNK-AVLAMFITGVLAELLTAC 711 >gi|332558536|ref|ZP_08412858.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides WS8N] gi|332276248|gb|EGJ21563.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides WS8N] Length = 164 Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 14/172 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L + +A+ S+ L VT ++++ L+ A ++ AG F LGA F + +++Y Sbjct: 1 MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++ F+F++M D E A R + +A + + ++ E Sbjct: 61 AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLARTSAPEA 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH---RRD 170 + G +G +L+ +A +E++ +LL +++GA RH RR+ Sbjct: 121 APATGAG-----LGAILFGPWALAIEVASGLLLAALMGA-----RHLGRRRE 162 >gi|126792906|gb|ABO27309.1| NADH dehydrogenase subunit 6 [Aratinga leucophthalma] Length = 170 Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 36/57 (63%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++++ LV T +P Y V L+F + G + LGA F++++ +VY+G ++V F++ Sbjct: 13 VLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVY 69 >gi|301353270|ref|YP_003795347.1| NADH dehydrogenase subunit 6 [Pseudopodoces humilis] gi|301016353|gb|ADK47637.1| NADH dehydrogenase subunit 6 [Pseudopodoces humilis] Length = 172 Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F F I+ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MQFVLFLGVCF--ILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +G ++V F++ + + AEP + Sbjct: 60 LGGMLVVFVYSVSL------AAEPYPE 80 >gi|1171845|sp|P43202|NU6M_FRACI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394680|emb|CAA52136.1| NADH dehydrogenase subunit 6 [Fratercula cirrhata] Length = 173 Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%) Query: 7 FFYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +F LF S ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 3 YFVLFLSLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGG 62 Query: 66 VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + D E + G+ G F+G+L L++ Sbjct: 63 MLVVFVYSVALAADPFPEAWGDWRVVGY-GVSFVGVLVMGLVI 104 >gi|107735872|ref|YP_626459.1| NADH dehydrogenase subunit 6 [Metarhizium anisopliae] gi|57904574|gb|AAW58829.1| NADH dehydrogenase subunit 6 [Metarhizium anisopliae] Length = 225 Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 43/205 (20%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +A++ V+ +NPI S+ SLI F + + +L G F+ L+VY+GAV Sbjct: 19 FLDIISVIALLFGIAVIVNKNPIASLLSLIGLFGSISVYLILSGLTFIGFSYLIVYIGAV 78 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL------------------------- 101 + FLFI+M+L+I + + FI IL Sbjct: 79 SILFLFILMLLNIRTSELQSNNVNSIPLALFITILFNYALFQLLPYYMAILNSYNSKLSN 138 Query: 102 -----------------AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAY 144 + L + N M F + + +++ IG +LYT Y Sbjct: 139 ILYYLPTSKYSDIIMNTNSNLDIDTHNIM-FVTSNSWDGTITETSHISTIGNILYTSYNM 197 Query: 145 PLEISGFILLLSMIGAIVLMLRHRR 169 L + ILL+ M+GAI++ ++ Sbjct: 198 WLFLVSIILLVVMVGAIIITIKQET 222 >gi|155624795|gb|ABU24808.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA LI C Sbjct: 85 SNKA-VLAMFITGVLAELLIAC 105 >gi|312233220|ref|YP_004021442.1| NADH dehydrogenase subunit 6 [Anhinga rufa] gi|312233221|ref|YP_004021443.1| NADH dehydrogenase subunit 6 [Anhinga rufa] Length = 173 Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVY 69 >gi|317503347|ref|ZP_07961394.1| NADH dehydrogenase subunit J [Prevotella salivae DSM 15606] gi|315665526|gb|EFV05146.1| NADH dehydrogenase subunit J [Prevotella salivae DSM 15606] Length = 173 Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 11/171 (6%) Query: 10 LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F +A+I S+ + VT + + + L+ AG++ +L F+ + VY G + Sbjct: 6 MFCILAVIILGSAIVCVTTKRIMRAATFLLCVLFGVAGIYFILDYTFLGAAQISVYAGGI 65 Query: 67 IVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAEGEL 121 V ++F+I ++ + V + KR F G G+L L++ +NF + + Sbjct: 66 TVLYVFVIQLVSKRTLQGLVERFKGKRVFSGVLLCVAGLLTVGLVLIKNNFYNAALQTTD 125 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + +G Y QY P E LL +IG I M+ + D K Sbjct: 126 TEVPMAQIGTALLGSDKY-QYVLPFEFISVFLLACIIGGI--MIARKEDNK 173 >gi|77463680|ref|YP_353184.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides 2.4.1] gi|77388098|gb|ABA79283.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides 2.4.1] Length = 164 Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 14/172 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L + +A+ S+ L VT ++++ L+ A ++ AG F LGA F + +++Y Sbjct: 1 MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++ F+F++M D E A R + +A + + ++ E Sbjct: 61 AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLTRTSAPEA 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH---RRD 170 + G +G +L+ +A +E++ +LL +++GA RH RR+ Sbjct: 121 APATGAG-----LGAILFGPWALAVEVASGLLLAALMGA-----RHLGRRRE 162 >gi|315638071|ref|ZP_07893256.1| NADH-quinone oxidoreductase subunit J [Campylobacter upsaliensis JV21] gi|315481919|gb|EFU72538.1| NADH-quinone oxidoreductase subunit J [Campylobacter upsaliensis JV21] Length = 172 Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 12/169 (7%) Query: 13 FMAIISSFLVVTV--RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F +I F +V V +N +YS+ +L V + + +L AEF+ I ++VY GAV+ + Sbjct: 10 FSVLILGFFLVAVLSKNMLYSLSALAGGMVFLSSFYFMLDAEFLGAIQIIVYSGAVLGIY 69 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 F +M D + E K F SFF ++ L+ ++ M F L F Sbjct: 70 SFAMMFFDASKDFKERLK---FKKSFF-ALIGLSLVGLFASLMSFKLNSVNVDLPFIDTA 125 Query: 131 VENIGKVL----YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ++ K L +++Y E +LL++++ AIV L H+ IK + Sbjct: 126 LFDLNKQLAFAIFSKYLLAFEFVALLLLIALVCAIV--LTHKELIKEKQ 172 >gi|224483638|gb|ACN51360.1| NADH dehydrogenase subunit 6 [Saxicola rubicola] Length = 172 Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 11/120 (9%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135 + AEP + G + G++ L +C + G + LV G V++ G Sbjct: 73 L------AAEPYPEA--WGDW--GVVGHGLGMCLVVMVGIMVGGGMDSLV-DGGTVDSGG 121 >gi|325126815|ref|YP_004285956.1| NADH dehydrogenase subunit 6 [Bycanistes brevis] gi|304365529|gb|ADM26337.1| NADH dehydrogenase subunit 6 [Bycanistes brevis] Length = 173 Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ V + +P Y V L+ V G L LGA F+A++ +VY+G ++V F++ + Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGASFIALVLFMVYLGGMLVVFVYSVA 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|221639524|ref|YP_002525786.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides KD131] gi|221160305|gb|ACM01285.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 precursor [Rhodobacter sphaeroides KD131] Length = 164 Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 14/172 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L + +A+ S+ L VT ++++ L+ A ++ AG F LGA F + +++Y Sbjct: 1 MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++ F+F++M D E A R + +A + + ++ E Sbjct: 61 AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALLAVPLVLGLLARASAPEA 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH---RRD 170 + G +G +L+ +A +E++ +LL +++GA RH RR+ Sbjct: 121 APATGAG-----LGAILFGPWALAVEVASGLLLAALMGA-----RHLGRRRE 162 >gi|190349382|ref|YP_001974694.1| NADH dehydrogenase subunit 6 [Pyxidea mouhotii] gi|108863145|gb|ABG22137.1| NADH dehydrogenase subunit 6 [Pyxidea mouhotii] Length = 174 Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLF 72 +V F + Sbjct: 64 LVIFAY 69 >gi|156142532|gb|ABU52031.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 37.7 bits (86), Expect = 1.00, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ + V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGWAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|126462512|ref|YP_001043626.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides ATCC 17029] gi|126104176|gb|ABN76854.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides ATCC 17029] Length = 164 Score = 37.7 bits (86), Expect = 1.00, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 14/172 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L + +A+ S+ L VT ++++ L+ A ++ AG F LGA F + +++Y Sbjct: 1 MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++ F+F++M D E A R + +A + + ++ E Sbjct: 61 AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLTRASAPEA 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH---RRD 170 + G +G +L+ +A +E++ +LL +++GA RH RR+ Sbjct: 121 APATGAG-----LGAILFGPWALAVEVASGLLLAALMGA-----RHLGRRRE 162 >gi|11643335|gb|AAG39528.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 29/182 (15%) Query: 8 FYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F LF S ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +V F++ + L D E G +G F +G++ ++V A VF ++ Sbjct: 64 LVVFVYWV-SLAAD-PYPEAWGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVL 111 Query: 126 FKGNNVENIG-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G V N+G VLY+ A I G+ LLL++ ++L R + R Sbjct: 112 VDGGTVNNVGVSFVRSDFGGVAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRG 167 Query: 175 DI 176 I Sbjct: 168 AI 169 >gi|55378234|ref|YP_136084.1| NADH dehydrogenase subunit J [Haloarcula marismortui ATCC 43049] gi|55230959|gb|AAV46378.1| NAD(P)H-quinone oxidoreductase chain 6 [Haloarcula marismortui ATCC 43049] Length = 89 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 47/82 (57%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S+ F LF+ + + S+ VV VR+ +S L + ++ A +++ A FVA + ++VYV Sbjct: 5 ESIAFALFAIVTVGSAAGVVLVRDVWHSALLLGVSLISVAVFYVMNQAAFVATMQILVYV 64 Query: 64 GAVIVFFLFIIMMLDIDIEVAE 85 G V++ F +M+ D V E Sbjct: 65 GGVLILITFAVMLTREDESVIE 86 >gi|224588006|ref|YP_002640537.1| NADH dehydrogenase subunit 6 [Gallirallus okinawae] gi|224471565|dbj|BAH24060.1| NADH dehydrogenase subunit 6 [Gallirallus okinawae] Length = 173 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Query: 9 YLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 YL F+ + + V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 3 YLMYFLGVCFVLGGLGVASNPSPYYGVVGLVLASVAGCGWLLSLGLSFVSLVLFMVYLGG 62 Query: 66 VIVFFLF 72 ++V FL+ Sbjct: 63 MLVVFLY 69 >gi|11643427|gb|AAG39574.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] Length = 172 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 28/162 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 -RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135 K G G G +IV + G LV G V N+G Sbjct: 78 YPKAWGDWGVVGYGFGMGMVIVVGA-----VVSGVFEVLV-DGGTVNNVGVSFIRLDFGG 131 Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 VLY+ A I G+ LLL++ ++L R + R I Sbjct: 132 AAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169 >gi|91975814|ref|YP_568473.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisB5] gi|91682270|gb|ABE38572.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisB5] Length = 168 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 69/128 (53%), Gaps = 4/128 (3%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S+ + VT N ++++ L+ + A F LGA F A++ +++Y GA++V F+F++ Sbjct: 13 ALVSAAIAVTRPNAVHALLYLVVTLLALAVAFFALGAAFAAVLLIMIYAGAIVVLFVFVV 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M L I E R++ G++ + +L + LI+ VF G + + + + Sbjct: 73 MTLPISPESMT-RERASLRGAWPVPLLLSVLIIAP---FVFGEFGIAANTAAAPVSAQQV 128 Query: 135 GKVLYTQY 142 G++L+ + Sbjct: 129 GRLLFGPW 136 >gi|325269273|ref|ZP_08135891.1| NADH dehydrogenase subunit J [Prevotella multiformis DSM 16608] gi|324988400|gb|EGC20365.1| NADH dehydrogenase subunit J [Prevotella multiformis DSM 16608] Length = 179 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 19/175 (10%) Query: 10 LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F+ +A++ S+ V+ + + + +L+F AGL+ LL F+ + + +Y G + Sbjct: 6 MFAVLAVVILASAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAVQISIYAGGI 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFF-IGILAAELIVCASNFMVFSA--EGE 120 + ++F I ++ + KR L +F + A ++V N ++ + EG+ Sbjct: 66 TMMYIFAIQLVSKRTLQGLSERWLGKRTILAAFIALAGFATVVVVLLKNELIRNTVVEGD 125 Query: 121 -LSRLVFKGNNVENIGKVLYT--QYAY--PLEISGFILLLSMIGAIVLMLRHRRD 170 LSR + ++ +G+ L + +Y Y P E LL +IG +V+ L H++ Sbjct: 126 SLSREL----TMDTVGQTLMSADKYGYVLPFEFISVFLLACIIGGLVI-LNHKKK 175 >gi|1171833|sp|P43193|NU6M_ALCTO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394660|emb|CAA52121.1| NADH dehydrogenase subunit 6 [Alca torda] gi|21104302|emb|CAC80344.1| NADH dehydrogenase subunit 6 [Alca torda] Length = 173 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFMFFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYL 60 Query: 64 GAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 G ++V F++ + + D E + G+ G+ F+G+L +++ Sbjct: 61 GGMLVVFVYSVSLAADPFPEAWGDWRVIGY-GAGFVGVLMVGMVI 104 >gi|1171837|sp|P43195|NU6M_BRAMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394664|emb|CAA52128.1| NADH dehydrogenase subunit 6 [Brachyramphus marmoratus] Length = 173 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|146277736|ref|YP_001167895.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides ATCC 17025] gi|145555977|gb|ABP70590.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides ATCC 17025] Length = 164 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 12/171 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L + +A+ + L VT ++++ L+ A ++ AG F LGA F + +++Y Sbjct: 1 MSDLSAIWCASVALACAILAVTRPAIVHALIWLVAALLSLAGCFFALGAGFAGAVQILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++ F+F++M D E ++R L + AA + + + + Sbjct: 61 AGAIVAVFVFVVMTADASPEALA--RERARLAQGWRRPAAA--VGLVALPLALGLLAGGT 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH---RRD 170 ++ ++G +L+ +A +E++ +LL +++GA RH RR+ Sbjct: 117 SPAAAPDSGPSLGAILFGPWAVAVEVASGLLLAALMGA-----RHLGRRRE 162 >gi|94490681|ref|YP_588197.1| NADH dehydrogenase subunit 6 [Phaethon rubricauda] gi|90990895|dbj|BAE92887.1| NADH dehydrogenase subunit 6 [Phaethon rubricauda] Length = 173 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVA 72 Query: 75 MMLDIDIEVAEPRKKRGF 92 + D E R+ G+ Sbjct: 73 LAADPFPEAWGDRQVMGY 90 >gi|13898636|gb|AAK48838.1| NADH dehydrogenase subunit 6 [Amazona ochrocephala oratrix] Length = 172 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++++ LV + +P Y V L+F V G + LG FV+++ +VY+G ++V F++ Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|16797936|gb|AAL29220.1| NADH dehydrogenase subunit 6 [Tringa totanus] Length = 173 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G + Sbjct: 4 FVFLLGMCFVLGGLAVASNPSPYYGVVGLVLASVAECGWLLSLGVSFVSLVLFMVYLGGM 63 Query: 67 IVFFLF 72 +V F++ Sbjct: 64 LVVFVY 69 >gi|288928303|ref|ZP_06422150.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 317 str. F0108] gi|288331137|gb|EFC69721.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 317 str. F0108] Length = 173 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 17/174 (9%) Query: 10 LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F +A++ S+ + V + + + L+F AG++ LL F+ + +Y G + Sbjct: 6 MFCILAVVIIGSAIVCVFTKRIMRAATFLLFVLFGVAGVYFLLDYTFLGTAQIAIYAGGL 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRG---FLGSF--FIGILAAELIVCASNFMVFSA---E 118 + ++F I ++ ++RG G+ IG++ L++ + F+ SA + Sbjct: 66 TMLYIFAIQLVSKRTLQGLQERQRGKTVVAGALVALIGLVTVALVLLKNQFIDMSASMVD 125 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 E+ V G + GK QY P E LL +IG I M+ + D K Sbjct: 126 AEVPMSVI-GEKIVGAGK---YQYVLPFEFISVFLLACIIGGI--MIARKEDKK 173 >gi|154818601|gb|ABS87782.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] Length = 175 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 27/161 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV--------------- 131 K L F G+LA L C EGE+ +VFK N Sbjct: 85 SNKA-VLAMFITGVLAELLTAC-----YILKEGEV-EVVFKFNGAGDWVIYDTGDSGFFS 137 Query: 132 -ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 E +G LY+ + + ++G+ LL IG +V+M R + Sbjct: 138 EEAMGIAALYSYGTWLVVVTGWSLL---IGVLVIMEVTRGN 175 >gi|332669458|ref|YP_004452466.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas fimi ATCC 484] gi|332338496|gb|AEE45079.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas fimi ATCC 484] Length = 325 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 91/169 (53%), Gaps = 8/169 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + + ++++ ++ R +++ +++ ++ A L++ A F+ ++ +VVY Sbjct: 26 ETVLFWVLAPIMVLAALGLLFARKAVHAALAVVVVMISLAFLYVAQDAVFLGVVQVVVYT 85 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGELS 122 GAV++ FLF++M++ +D + R G +IG LA L V + + +A G S Sbjct: 86 GAVMMLFLFVLMLVGVDASDSLVETIR---GQRWIGALAGIGLGVVLAGVVGRAAYGP-S 141 Query: 123 RLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + N N I +++ +Y E+ G +L+ + +GA+V R R Sbjct: 142 QGLDSANEASNPVAIAHLVFGEYVLAFEVVGALLVTAALGALVYTHRTR 190 >gi|154125715|ref|YP_001382258.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] gi|151327685|gb|ABS00283.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] gi|189342984|gb|ACD92015.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] gi|189342998|gb|ACD92028.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] gi|198387241|gb|ACH87083.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] gi|291464811|gb|ADE05889.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] Length = 173 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77 >gi|11643311|gb|AAG39516.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643317|gb|AAG39519.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643321|gb|AAG39521.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643325|gb|AAG39523.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643327|gb|AAG39524.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643329|gb|AAG39525.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643333|gb|AAG39527.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] Length = 172 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 29/182 (15%) Query: 8 FYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F LF S ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +V F++ + L D E G +G F +G++ MV + + ++ Sbjct: 64 LVVFVYSV-SLAAD-PYPEAWGDWGVVGYGFGMGMV----------IMVGAVVSGVFEVL 111 Query: 126 FKGNNVENIG-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G V N+G VLY+ A I G+ LLL++ ++L R + R Sbjct: 112 VDGGTVNNVGVSFVRSDFGGVAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRG 167 Query: 175 DI 176 I Sbjct: 168 AI 169 >gi|18643242|gb|AAL76252.1| NADH dehydrogenase subunit 6 [Gracula religiosa religiosa] Length = 83 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 I+ V + +P Y V L+ A V G + LG FVA++ ++VY+G ++V F++ Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVYLGGMLVVFVY 69 >gi|1171839|sp|P43196|NU6M_CALMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394670|emb|CAA52138.1| NADH dehydrogenase subunit 6 [Calidris maritima] Length = 173 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVC 108 + D E + G+ SF + G++ LI C Sbjct: 73 LAADPFPEAWGDWRVVGYGASFILVVIAGMIVGGLIEC 110 >gi|13508744|emb|CAC35115.1| NADH dehydrogenase subunit 6 [Ficedula parva] gi|14268392|emb|CAC39330.1| NADH dehydrogenase subunit 6 [Ficedula parva] Length = 172 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 73 L------AAEPYPE 80 >gi|304322925|ref|YP_003856771.1| NADH dehydrogenase subunit 6 [Lynx rufus] gi|262232100|gb|ACY38382.1| NADH dehydrogenase subunit 6 [Lynx rufus] Length = 175 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG GILA L C Sbjct: 85 SNKA-VLGMLITGILAELLTAC 105 >gi|302632662|ref|YP_003848758.1| NADH dehydrogenase subunit 6 [Cuora pani] gi|259122043|gb|ACV92117.1| NADH dehydrogenase subunit 6 [Cuora pani] Length = 174 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLF 72 +V F + Sbjct: 64 LVIFAY 69 >gi|222479144|ref|YP_002565381.1| NADH dehydrogenase subunit J [Halorubrum lacusprofundi ATCC 49239] gi|222452046|gb|ACM56311.1| NADH dehydrogenase subunit J [Halorubrum lacusprofundi ATCC 49239] Length = 88 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 45/82 (54%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV ++ F LF+ + + VV R+ ++ L A + A +++L AEF+A + ++ Sbjct: 1 MVYATIAFGLFAAVTLAFGLGVVLARDVFHAALLLGGALTSVAVHYVMLQAEFIAAMQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE 82 VYVG V++ F +M+ D E Sbjct: 61 VYVGGVLILVTFAVMLTRSDTE 82 >gi|13898633|gb|AAK48836.1| NADH dehydrogenase subunit 6 [Amazona ochrocephala auropalliata] Length = 172 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++++ LV + +P Y V L+F V G + LG FV+++ +VY+G ++V F++ Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|239997790|gb|ACS37282.1| NADH dehydrogenase subunit 6 [Columba livia] Length = 173 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FF FSF ++ V + +P Y V L+ A V G L LG F++++ +VY+G Sbjct: 5 VFFLGFSF--VLGGLGVASNPSPYYGVVGLVVASVTGCGWLLSLGVSFMSLVLFMVYLGG 62 Query: 66 VIVFFLF 72 ++V F++ Sbjct: 63 MLVVFVY 69 >gi|190349341|ref|YP_001974591.1| NADH dehydrogenase subunit 6 [Cairina moschata] gi|189343012|gb|ACD92041.1| NADH dehydrogenase subunit 6 [Cairina moschata] Length = 173 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77 >gi|13898639|gb|AAK48840.1| NADH dehydrogenase subunit 6 [Amazona farinosa] Length = 172 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++++ LV + +P Y V L+F V G + LG FV+++ +VY+G ++V F++ Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|331746935|ref|YP_004425083.1| NADH dehydrogenase subunit 6 [Anas formosa] gi|330369642|gb|AEC12187.1| NADH dehydrogenase subunit 6 [Anas formosa] Length = 173 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77 >gi|295442710|ref|YP_003595316.1| NADH dehydrogenase subunit 6 [Cuora galbinifrons] gi|190148575|gb|ACE63319.1| NADH dehydrogenase subunit 6 [Cuora galbinifrons] Length = 174 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLF 72 +V F + Sbjct: 64 LVIFAY 69 >gi|161561751|ref|YP_001586147.1| NADH dehydrogenase subunit 6 [Rhynochetos jubatus] gi|143024744|gb|ABO93095.1| NADH dehydrogenase subunit 6 [Rhynochetos jubatus] Length = 172 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 7/84 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SL +L + ++ + V + +P Y V L+ A + G L LG FV+++ +VY Sbjct: 1 MASLVLFLGGWF-VLGALAVASNPSPYYGVVGLVVASIAGCGWLLSLGVSFVSLVLFMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP 86 +G ++V F++ + + AEP Sbjct: 60 LGGMLVVFVYSVSL------AAEP 77 >gi|49146207|ref|YP_025987.1| NADH dehydrogenase subunit 6 [Anseranas semipalmata] gi|37960693|gb|AAP47792.1| NADH dehydrogenase subunit 6 [Anseranas semipalmata] Length = 173 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F + S ++ + V + +P Y V L+ A V G L LGA FV++ +VY+ Sbjct: 1 MTYFVFFLSVCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLLSLGASFVSLALFMVYL 60 Query: 64 GAVIVFFLFIIMMLDIDIEVAEP 86 G ++V F++ + + AEP Sbjct: 61 GGMLVVFVYSVSL------AAEP 77 >gi|71658035|ref|YP_271975.1| NADH dehydrogenase subunit 6 [Alectura lathami] gi|38048816|gb|AAR10289.1| NADH dehydrogenase subunit 6 [Alectura lathami] Length = 173 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%) Query: 7 FFYLF---SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +F LF SFM + S V + +P Y V L+ V G L LG FV+++ +VY+ Sbjct: 3 YFVLFLGVSFM--LGSLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGGSFVSLVLFMVYL 60 Query: 64 GAVIVFFLFIIMM 76 G ++V F++ + + Sbjct: 61 GGMLVVFVYSVAL 73 >gi|14141920|ref|NP_115375.1| NADH dehydrogenase subunit 6 [Anomalopteryx didiformis] gi|14039598|gb|AAK53332.1|AF338714_1 NADH dehydrogenase subunit VI [Anomalopteryx didiformis] Length = 173 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 I+ + V + +P Y V L+ V G L LGA F++++ +VY+G ++V F++ Sbjct: 13 ILGALAVASNPSPYYGVLGLVVGSVMGCGWLLSLGASFISLVLFLVYLGGMLVVFVY 69 >gi|156142566|gb|ABU52048.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|156142518|gb|ABU52024.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142520|gb|ABU52025.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|326772142|ref|ZP_08231427.1| NADH dehydrogenase I, J subunit [Actinomyces viscosus C505] gi|326638275|gb|EGE39176.1| NADH dehydrogenase I, J subunit [Actinomyces viscosus C505] Length = 328 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 35/173 (20%), Positives = 83/173 (47%), Gaps = 16/173 (9%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + + V+T + + + ++I ++ A L+++ + F+ + +VVY Sbjct: 22 EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 81 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+ LF+IM++ + + EP G + + IL + A +V+ + Sbjct: 82 GAVMTLVLFVIMLVGVGGD--EPVGAAGTVMRRPVLILLGLGLAGALTAVVWRS------ 133 Query: 124 LVFKGNNVENIGK--------VLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + K +++ K LY + +E++ +L+++ +GA+ L R R Sbjct: 134 TLPKPAGLKDGAKAAPDLLAVTLYHDHVVTMELTAILLIVAAVGALTLTHRQR 186 >gi|333025063|ref|ZP_08453127.1| putative NADH dehydrogenase subunit I J [Streptomyces sp. Tu6071] gi|332744915|gb|EGJ75356.1| putative NADH dehydrogenase subunit I J [Streptomyces sp. Tu6071] Length = 211 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 29/45 (64%) Query: 46 FLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 +LLL AEF+A + +++YVG+V+V LF +M+ I ++ R Sbjct: 18 YLLLTAEFIAWVQVLIYVGSVVVLLLFGLMLTRAPIGRSDDADSR 62 >gi|19481576|gb|AAL88860.1|AF407127_1 NADH dehydrogenase subunit 6 [Petronia dentata] Length = 159 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 13/121 (10%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 + D E + G+ L L+V MV G + L+ G V N Sbjct: 73 LAADPYPEAWDSWGVAGY-------GLGMSLVV-----MVGLVMGGMGELLVSGGTVNNS 120 Query: 135 G 135 G Sbjct: 121 G 121 >gi|156142564|gb|ABU52047.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|5835945|ref|NP_008711.1|ND6_15091 NADH dehydrogenase subunit 6 [Aythya americana] gi|4887672|gb|AAD32264.1|AF090337_13 NADH dehydrogenase subunit 6 [Aythya americana] Length = 173 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77 >gi|288926083|ref|ZP_06420011.1| NADH dehydrogenase I, subunit 6 [Prevotella buccae D17] gi|315608356|ref|ZP_07883345.1| NADH dehydrogenase I subunit 6 [Prevotella buccae ATCC 33574] gi|288337123|gb|EFC75481.1| NADH dehydrogenase I, subunit 6 [Prevotella buccae D17] gi|315249986|gb|EFU29986.1| NADH dehydrogenase I subunit 6 [Prevotella buccae ATCC 33574] Length = 173 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 8/160 (5%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ + V + + + L+F AG++ LL F+ + VY G + + ++F I ++ Sbjct: 17 SAVMCVMTKRIMRAATFLLFVLFGVAGIYFLLDYTFLGTAQIAVYAGGITMVYIFAIQLV 76 Query: 78 DIDI--EVAEPRKKRGFLGSF---FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 V E K LG +G+ +++ + F+ F+A+ + + Sbjct: 77 SKQTLQGVVERFKGSRVLGGAVVSLVGLATVVVVLLKNRFIDFAAQSAVGEIPMNTIGTA 136 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +G Y QY P E LL +IG I M+ + D K Sbjct: 137 LLGSEKY-QYVLPFEFISVFLLACIIGGI--MIARKEDDK 173 >gi|161561793|ref|YP_001586270.1| NADH dehydrogenase subunit 6 [Tachybaptus novaehollandiae] gi|143024869|gb|ABO93134.1| NADH dehydrogenase subunit 6 [Tachybaptus novaehollandiae] Length = 173 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|322422363|ref|YP_004221795.1| NADH dehydrogenase subunit 6 [Luscinia calliope] gi|316891673|gb|ADU57283.1| NADH dehydrogenase subunit 6 [Luscinia calliope] Length = 172 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 73 L------AAEPYPE 80 >gi|11643241|gb|AAG39481.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643243|gb|AAG39482.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643247|gb|AAG39484.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643249|gb|AAG39485.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643251|gb|AAG39486.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643253|gb|AAG39487.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643255|gb|AAG39488.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643257|gb|AAG39489.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643259|gb|AAG39490.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643261|gb|AAG39491.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643263|gb|AAG39492.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643265|gb|AAG39493.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643267|gb|AAG39494.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643269|gb|AAG39495.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643271|gb|AAG39496.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643273|gb|AAG39497.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643275|gb|AAG39498.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643277|gb|AAG39499.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643279|gb|AAG39500.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643281|gb|AAG39501.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643285|gb|AAG39503.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643287|gb|AAG39504.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643289|gb|AAG39505.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643291|gb|AAG39506.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643293|gb|AAG39507.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643295|gb|AAG39508.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643297|gb|AAG39509.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643299|gb|AAG39510.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643301|gb|AAG39511.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643303|gb|AAG39512.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643305|gb|AAG39513.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643307|gb|AAG39514.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643309|gb|AAG39515.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643313|gb|AAG39517.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643315|gb|AAG39518.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643319|gb|AAG39520.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643323|gb|AAG39522.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643331|gb|AAG39526.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643339|gb|AAG39530.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643341|gb|AAG39531.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643343|gb|AAG39532.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643345|gb|AAG39533.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643347|gb|AAG39534.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643349|gb|AAG39535.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643351|gb|AAG39536.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643353|gb|AAG39537.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643355|gb|AAG39538.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643357|gb|AAG39539.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643359|gb|AAG39540.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643365|gb|AAG39543.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643369|gb|AAG39545.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643373|gb|AAG39547.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643377|gb|AAG39549.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 29/182 (15%) Query: 8 FYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F LF S ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +V F++ + L D E G +G F +G++ ++V A VF ++ Sbjct: 64 LVVFVYSV-SLAAD-PYPEAWGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVL 111 Query: 126 FKGNNVENIG-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G V N+G VLY+ A I G+ LLL++ ++L R + R Sbjct: 112 VDGGTVNNVGVSFVRSDFGGVAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRG 167 Query: 175 DI 176 I Sbjct: 168 AI 169 >gi|2660572|emb|CAA71362.1| NADH deyhdrogenase subunit 6 [Ficedula albicollis] gi|2660578|emb|CAA71363.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata] gi|13508732|emb|CAC35109.1| NADH dehydrogenase subunit 6 [Ficedula albicollis] gi|13508735|emb|CAC35117.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata] gi|13508738|emb|CAC35119.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata] gi|13508741|emb|CAC35121.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] gi|14268380|emb|CAC39331.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata] gi|14268382|emb|CAC39349.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] gi|14268384|emb|CAC39350.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] gi|14268386|emb|CAC39351.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] gi|14268388|emb|CAC39352.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] gi|14268390|emb|CAC39353.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] Length = 172 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 73 L------AAEPYPE 80 >gi|84488690|ref|YP_448892.1| NADH dehydrogenase subunit 6 [Testudo kleinmanni] gi|67005717|gb|AAY62509.1| NADH dehydrogenase subunit 6 [Testudo kleinmanni] Length = 174 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y VFSL+ G+ + +G FV++I ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKR 90 +V F + + AEP Sbjct: 64 LVIFAYSCAL------AAEPYPAS 81 >gi|1171843|sp|P43200|NU6M_FRAAR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394674|emb|CAA52134.1| NADH dehydrogenase subunit 6 [Fratercula arctica] Length = 173 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F + S ++ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFVFFLSLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFVY 69 >gi|156142580|gb|ABU52055.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPXYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|156142536|gb|ABU52033.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142538|gb|ABU52034.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKKRGFLGSF 96 + AEP + GSF Sbjct: 67 L------AAEPYPEA--WGSF 79 >gi|190349494|ref|YP_001974655.1| NADH dehydrogenase subunit 6 [Cyclemys atripons] gi|116518545|gb|ABJ99500.1| NADH dehydrogenase subunit 6 [Cyclemys atripons] Length = 174 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 37/66 (56%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G F++++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGVLSGCGVLVSMGGSFISLVLFLIYLGGM 63 Query: 67 IVFFLF 72 +V F + Sbjct: 64 LVIFAY 69 >gi|11643363|gb|AAG39542.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643367|gb|AAG39544.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643375|gb|AAG39548.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643381|gb|AAG39551.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 29/182 (15%) Query: 8 FYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F LF S ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +V F++ + L D E G +G F +G++ ++V A VF ++ Sbjct: 64 LVVFVYSV-SLAAD-PYPEAWGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVL 111 Query: 126 FKGNNVENIG-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G V N+G VLY+ A I G+ LLL++ ++L R + R Sbjct: 112 VDGGTVNNVGVSFVRSDFGGVAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRG 167 Query: 175 DI 176 I Sbjct: 168 AI 169 >gi|156142554|gb|ABU52042.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142556|gb|ABU52043.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142582|gb|ABU52056.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKKRGFLGSF 96 + AEP + GSF Sbjct: 67 L------AAEPYPEA--WGSF 79 >gi|16797923|gb|AAL29214.1| NADH dehydrogenase subunit 6 [Tringa glareola] Length = 173 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 36/69 (52%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F +L ++ V + +P Y V L+ A + G L LG FV+++ +VY+ Sbjct: 1 MTYFVFLLGLCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLLSLGISFVSLVLFMVYL 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFVY 69 >gi|156142592|gb|ABU52061.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142594|gb|ABU52062.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142596|gb|ABU52063.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|240266670|ref|YP_002971046.1| NADH dehydrogenase subunit 6 [Dendrocygna javanica] gi|209887475|gb|ACI95091.1| NADH dehydrogenase subunit 6 [Dendrocygna javanica] Length = 173 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG F++++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVAGCGWLLSLGVSFISLVLFMVYLGGMLVVFVYSVAL------AAEP 77 Query: 87 RKK 89 K Sbjct: 78 FPK 80 >gi|108793517|ref|YP_637113.1| NADH dehydrogenase subunit 6 [Podiceps cristatus] gi|108755535|dbj|BAE95766.1| NADH dehydrogenase subunit 6 [Podiceps cristatus] Length = 173 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|1171844|sp|P43201|NU6M_FRACR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394676|emb|CAA52135.1| NADH dehydrogenase subunit 6 [Fratercula corniculata] Length = 173 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F + S ++ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFVFFLSLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFVY 69 >gi|156142576|gb|ABU52053.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142578|gb|ABU52054.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142598|gb|ABU52064.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|156142524|gb|ABU52027.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|134034933|ref|YP_001096532.1| NADH dehydrogenase subunit 6 [Melopsittacus undulatus] gi|133712157|gb|ABO36795.1| NADH dehydrogenase subunit 6 [Melopsittacus undulatus] Length = 169 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++++ LV + +P Y V L+F V G + LG FV+++ +VY+G ++V F++ Sbjct: 13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|138892609|ref|YP_001127589.1| NADH dehydrogenase subunit 6 [Mauremys mutica] gi|90576894|gb|ABD95490.1| NADH dehydrogenase subunit 6 [Mauremys mutica] Length = 174 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVGMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFF 70 +V F Sbjct: 64 LVIF 67 >gi|116734813|ref|YP_842411.1| NADH dehydrogenase subunit 6 [Pteroglossus azara flavirostris] gi|109676670|gb|ABG37758.1| NADH dehydrogenase subunit 6 [Pteroglossus azara flavirostris] Length = 173 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+FA V G + LG FV ++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVMGLVFASVVGCGWLVSLGMSFVGLVLFMVYLGGMLVVFVY 69 >gi|84488719|ref|YP_448778.1| NADH dehydrogenase subunit 6 [Cygnus columbianus] gi|67005520|gb|AAY62378.1| NADH dehydrogenase subunit 6 [Cygnus columbianus] Length = 173 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77 >gi|20090361|ref|NP_616436.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina acetivorans C2A] gi|19915366|gb|AAM04916.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina acetivorans C2A] Length = 86 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 EL +N++ IG +++TQY P E+ +LL S+IGAI Sbjct: 36 ELPENPADPSNIQGIGMLIFTQYVVPFEVLSIVLLASLIGAI 77 >gi|323345261|ref|ZP_08085484.1| NADH-quinone oxidoreductase subunit J [Prevotella oralis ATCC 33269] gi|323093375|gb|EFZ35953.1| NADH-quinone oxidoreductase subunit J [Prevotella oralis ATCC 33269] Length = 173 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 10/173 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + S + + S+ + V + + + LIF AGL+ LL ++ + +Y G Sbjct: 5 IMFCILSVVILGSAIMCVMTKRIMRAATFLIFVLFGVAGLYFLLDYTYLGAAQISIYAGG 64 Query: 66 VIVFFLFIIMMLDIDI------EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 + V ++F I ++ + R G L S F G+ +++ + F+ SA Sbjct: 65 ITVLYIFAIQLVSKRTLQGLVERIKGSRLIAGLLVSLF-GLATVVIVLLKNKFLDMSASV 123 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + +G Y QY P E LL +IG LM+ + D K Sbjct: 124 SDTEVPMNTIGTALVGSEKY-QYVLPFEFISVFLLACIIGG--LMIARKEDKK 173 >gi|169595820|ref|XP_001791334.1| hypothetical protein SNOG_00653 [Phaeosphaeria nodorum SN15] gi|111071028|gb|EAT92148.1| hypothetical protein SNOG_00653 [Phaeosphaeria nodorum SN15] Length = 688 Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 14/135 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVV-----YVGAVIVFFLFIIMMLDIDIEVAEPRK 88 SL+FA L L + I + Y+ + ++ L I+ L + E+ +PR+ Sbjct: 96 SLVFALTANMSLLLNMARRLSFAIAQPITILGWYLSSALLIALVIVASLPV-FEI-QPRQ 153 Query: 89 KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 + +++ GI+AA L ++ M F+A G ++G+ ++ ++ +Q L+ Sbjct: 154 EHALSQAYYYGIIAAALYFIVASLMAFTAYG-----AWRGHYSKDF-QLTPSQRTLMLQT 207 Query: 149 SGFILLLSMIGAIVL 163 GF++ L ++GA+V Sbjct: 208 IGFMVYL-LLGALVF 221 >gi|40388207|gb|AAQ91105.1| NADH dehydrogenase subunit 6 [Acanthisitta chloris] Length = 173 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 7 FFYLF-SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +F LF S I+ V + +P Y V L+ V G L LG FV+++ +VY+G Sbjct: 3 YFVLFLSLCFILGGLAVASSPSPYYGVVGLVLGAVAGCGWLLSLGVSFVSLVLFMVYLGG 62 Query: 66 VIVFFLF 72 ++V F++ Sbjct: 63 MLVVFVY 69 >gi|325126943|ref|YP_004286178.1| NADH dehydrogenase subunit 6 [Geotrygon violacea] gi|304365571|gb|ADM26376.1| NADH dehydrogenase subunit 6 [Geotrygon violacea] Length = 173 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ Sbjct: 24 SPYYGVVGLVAASVTGCGWLLSLGVSFVALVLFMVYLGGMLVVFVY 69 >gi|222839266|ref|YP_002586999.1| NADH dehydrogenase subunit 6 [Cuora flavomarginata] gi|188503898|gb|ACD56043.1| NADH dehydrogenase subunit 6 [Cuora flavomarginata] Length = 174 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVGMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLF 72 +V F + Sbjct: 64 LVIFAY 69 >gi|19343500|ref|NP_597966.1| NADH dehydrogenase subunit 6 [Ursus americanus] gi|19110556|gb|AAL85166.1|AF303109_12 NADH dehydrogenase subunit 6 [Ursus americanus] Length = 175 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEAWV 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ LI C Sbjct: 85 SNKA-VLGAFIVGLLSELLIAC 105 >gi|13116563|ref|NP_076842.1| NADH dehydrogenase subunit 6 [Dinornis giganteus] gi|12957439|gb|AAK07714.1| NADH dehydrogenase subunit 6 [Dinornis giganteus] Length = 173 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 I+ + V + +P Y V L+ V G L LGA F++++ +VY+G ++V F++ Sbjct: 13 ILGALAVASNPSPYYGVLGLVVGSVMGCGWLLSLGASFISLVLFLVYLGGMLVVFVY 69 >gi|84488704|ref|YP_448879.1| NADH dehydrogenase subunit 6 [Testudo marginata] gi|67005703|gb|AAY62496.1| NADH dehydrogenase subunit 6 [Testudo marginata] Length = 174 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y VFSL+ G+ + +G FV++I ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFMIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F + + AEP Sbjct: 64 LVIFAYSCAL------AAEPYPA 80 >gi|67005619|gb|AAY62418.1| NADH dehydrogenase subunit 6 [Testudo graeca] Length = 174 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y VFSL+ G+ + +G FV++I ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F + + AEP Sbjct: 64 MVIFAYSCAL------AAEPYPA 80 >gi|260912214|ref|ZP_05918766.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295] gi|260633648|gb|EEX51786.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295] Length = 173 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 17/174 (9%) Query: 10 LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F +A++ S+ + V + + + L+F AG++ LL F+ + +Y G + Sbjct: 6 MFCILAVVIIGSAIVCVFTKRIMRAATFLLFVLFGVAGVYFLLDYTFLGTAQIAIYAGGL 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRG---FLGSF--FIGILAAELIVCASNFMVFSA---E 118 + ++F I ++ ++RG G+ IG++ L++ + F+ SA + Sbjct: 66 TMLYIFAIQLVSKRTLQGLQERQRGKTVVAGALVALIGLVTVALVLLKNQFIDMSASMVD 125 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 E+ V G + GK QY P E LL +IG I M+ + D K Sbjct: 126 AEVPMSVI-GEKLVGAGK---YQYVLPFEFISVFLLACIIGGI--MIARKEDKK 173 >gi|154818546|gb|ABS87741.1| NADH dehydrogenase subunit 6 [Felis margarita] gi|154818550|gb|ABS87744.1| NADH dehydrogenase subunit 6 [Felis margarita] gi|154818554|gb|ABS87747.1| NADH dehydrogenase subunit 6 [Felis margarita] gi|154818558|gb|ABS87750.1| NADH dehydrogenase subunit 6 [Felis margarita] gi|154818645|gb|ABS87815.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|155624512|gb|ABU24596.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624571|gb|ABU24640.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624731|gb|ABU24760.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 85 SNKA-VLAMFITGVLAELLTAC 105 >gi|156142510|gb|ABU52020.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142522|gb|ABU52026.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|15897267|ref|NP_341872.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus P2] gi|284174516|ref|ZP_06388485.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus 98/2] gi|13813472|gb|AAK40662.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus P2] gi|261601936|gb|ACX91539.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus solfataricus 98/2] Length = 167 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 15/172 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT--- 58 ++Q + F F M I S +V +N Y SL F ++ A L L + + Sbjct: 8 IIQYILFGFFGVMTIAFSIYIVRAKNVFYGAVSLAFLGLSIAALIALEAPSTYGIYSVFH 67 Query: 59 LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 +++YVGA + F ++M D+EV + RG LG ILA + +VF + Sbjct: 68 ILLYVGATVTFLAISLVMFK-DLEV---KFGRGALG-----ILAGGAVTLLFLIIVFISI 118 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 ++S + N + + L Y +PL I LL ++I AI L RRD Sbjct: 119 PQVSSAEVQPINFQVLANDLIENYWFPLIILVIALLTTLIEAISL---ARRD 167 >gi|122056419|gb|ABM66076.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056421|gb|ABM66077.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056423|gb|ABM66078.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056425|gb|ABM66079.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056427|gb|ABM66080.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056429|gb|ABM66081.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056431|gb|ABM66082.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056433|gb|ABM66083.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056435|gb|ABM66084.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] Length = 172 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + + AEP Sbjct: 23 SPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 76 >gi|322369191|ref|ZP_08043756.1| NADH dehydrogenase subunit J [Haladaptatus paucihalophilus DX253] gi|320550923|gb|EFW92572.1| NADH dehydrogenase subunit J [Haladaptatus paucihalophilus DX253] Length = 88 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 45/76 (59%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F LF+ + + SS V VR+ +S L + ++ A +++L AEFVA + ++ Sbjct: 1 MAYEMIAFALFAILTVASSVGAVLVRDVWHSALLLGASLLSFAAHYVMLQAEFVAAMQIL 60 Query: 61 VYVGAVIVFFLFIIMM 76 VYVG V++ F +M+ Sbjct: 61 VYVGGVLILITFAVML 76 >gi|14141960|ref|NP_115401.1|ND6_15669 NADH dehydrogenase subunit 6 [Tinamus major] gi|14039506|gb|AAK53254.1|AF338707_13 NADH dehydrogenase subunit VI [Tinamus major] Length = 173 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Query: 9 YLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 Y SF+ + + + V + +P Y V L+ V G L LG FV+++ +VY+G Sbjct: 3 YFVSFLGVCFVLGALAVASNPSPQYGVMGLVMGSVVGCGWLLSLGVSFVSLVLFLVYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEP 86 ++V F++ + + AEP Sbjct: 63 MLVVFVYCVSL------AAEP 77 >gi|18077894|ref|NP_542241.1| NADH dehydrogenase subunit 6 [Tachyglossus aculeatus] gi|75054233|sp|Q8W9G2|NU6M_TACAC RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|17932776|emb|CAC88021.1| NADH dehydrogenase subunit 6 [Tachyglossus aculeatus] Length = 166 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F YL S M ++S + +PIY SL+ + G+ + LG F+ +I +VY+G + Sbjct: 4 FIYLLSVMLVLSFMAFASNPSPIYGGLSLVLSGGVGCGIIVSLGGSFLGLIVFLVYLGGM 63 Query: 67 IVFF 70 +V F Sbjct: 64 LVVF 67 >gi|322422853|ref|YP_004222722.1| NADH dehydrogenase subunit 6 [Leiothrix argentauris] gi|316891659|gb|ADU57270.1| NADH dehydrogenase subunit 6 [Leiothrix argentauris] Length = 172 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 34/57 (59%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A + G + LGA FV+++ L+VY+G ++V F++ Sbjct: 13 VLGGLAVSSNPSPYYGVVGLVVASIAGCGWLVSLGASFVSLVLLMVYLGGMLVVFVY 69 >gi|49146725|ref|YP_025961.1| NADH dehydrogenase subunit 6 [Strigops habroptilus] gi|37960707|gb|AAP47805.1| NADH dehydrogenase subunit 6 [Strigops habroptilus] Length = 171 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 35/57 (61%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++++ V + +P Y V L+F + G + LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLAALAVASNPSPYYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|326535880|ref|YP_004300328.1| NADH dehydrogenase subunit 6 [Cyanoptila cyanomelana] gi|325305630|gb|ADZ10796.1| NADH dehydrogenase subunit 6 [Cyanoptila cyanomelana] Length = 172 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 73 L------AAEPYPE 80 >gi|327492707|ref|YP_004347598.1| NADH dehydrogenase subunit 6 [Tetractenos glaber] gi|327392600|dbj|BAK10027.1| NADH dehydrogenase subunit 6 [Tetractenos glaber] Length = 173 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 28 PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-IIMMLDIDIEVAEP 86 P Y VFSL+ + G+ +L G F++++ L++Y+G ++V F++ + D D EV Sbjct: 25 PFYGVFSLVLLALYCCGVLVLHGGAFLSLVLLMIYMGGMLVVFIYSSALSADKDPEVPSG 84 Query: 87 RKK 89 + Sbjct: 85 WQA 87 >gi|330834248|ref|YP_004408976.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Metallosphaera cuprina Ar-4] gi|329566387|gb|AEB94492.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Metallosphaera cuprina Ar-4] Length = 154 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 18/166 (10%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT---LVVYVGAV 66 LFS +A+ ++ +V +N YS SL F ++ A L + ++ + L++YVGA Sbjct: 2 LFSILALATALFIVNSKNVFYSAVSLAFLGISVAVLIADINPAAYSLYSAFHLILYVGAT 61 Query: 67 IVFF-LFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +VF + ++M +++ EV P L A L++ S+ + G +L Sbjct: 62 VVFLSISLVMFRGLEVKEVKTPWAPS--LAIVAAIAFFAVLVLSTSS---ITPSGTPEQL 116 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 N+ +G+ L +QY +P I LL +MI A+ L RRD Sbjct: 117 -----NLAVVGEKLISQYWFPTFILIVALLTTMIEALSL---ARRD 154 >gi|156142534|gb|ABU52032.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|156142570|gb|ABU52050.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142572|gb|ABU52051.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|156142568|gb|ABU52049.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|164422160|ref|YP_001648831.1| NADH dehydrogenase subunit 6 [Sylvia atricapilla] gi|164414706|emb|CAP10133.1| NADH dehydrogenase subunit 6 [Sylvia atricapilla] Length = 172 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 28/162 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FV++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVIGLVIASVVGCGWLVSLGVSFVSLALIMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 -RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135 + G G + G++ ++ MV GE+ ++ V+N G Sbjct: 78 YPEGWGDWGVVWYGLVMGLVV------MVGGTIGEVFGVLVDVGTVDNGGLSLVRLDFSG 131 Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 VLY+ L + G+ LLL++ ++L R + R I Sbjct: 132 VAVLYSWGVGLLMVGGWGLLLTLF----VVLELVRGLSRGAI 169 >gi|155624671|gb|ABU24715.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 85 SNKA-VLAMFITGVLAELLTAC 105 >gi|155624803|gb|ABU24814.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 85 SNKA-VLAMFITGVLAQLLTAC 105 >gi|326535925|ref|YP_004300369.1| NADH dehydrogenase subunit 6 [Gallinula chloropus] gi|325305661|gb|ADZ10824.1| NADH dehydrogenase subunit 6 [Gallinula chloropus] Length = 173 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 19/158 (12%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-IIMMLDIDIEVAE 85 +P Y V L+ A V G L LG FV+++ +VY+G ++V FL+ + + D+ E Sbjct: 24 SPYYGVVGLVLASVVGCGWLLSLGLSFVSLVLFMVYLGGMLVVFLYSVSLAADLYPEGWG 83 Query: 86 PRKKRGF-LG---SFFIGILAAELIVCASNFMVFSAE--GELS-RLVFKGNNVENIGKVL 138 + G+ LG +G+ L+ C F V + + G LS RL F G VL Sbjct: 84 DWRVMGYILGLILVLVVGLSVGGLVEC-WKFGVVTVDSVGVLSVRLDFSGV------AVL 136 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 Y+ ++G+ LLL++ ++L R + R I Sbjct: 137 YSWGVGVFLVAGWGLLLTLF----VVLELVRGLGRGAI 170 >gi|157488883|gb|ABV57845.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|11643283|gb|AAG39502.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] Length = 172 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 28/173 (16%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVASIAGWGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV- 71 Query: 76 MLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 L D E G +G F +G++ ++V A VF ++ G V N+ Sbjct: 72 SLAAD-PYPEAWGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVLVDGGTVNNV 120 Query: 135 G-----------KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G VLY+ A I G+ LLL++ ++L R + R I Sbjct: 121 GVSFVRSDFGGVAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169 >gi|121582447|ref|YP_980176.1| NADH dehydrogenase subunit 6 [Takydromus tachydromoides] gi|121309345|dbj|BAF43964.1| NADH dehydrogenase subunit 6 [Takydromus tachydromoides] Length = 171 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 17/161 (10%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P + SL+ A GL +LLG+ FV+++ L++Y+G ++V F + + + D Sbjct: 19 VASNPSPYFGAGSLVVAASFGCGLLVLLGSSFVSLVLLLIYLGGMLVVFAYSVALAS-DP 77 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS------RLVFKGNNVENIG 135 G+ G++ + + L + + F+ F G S RL G Sbjct: 78 YPESWGNVWGYFGAYVVMVFFLVLSLGDAGFVGFGVMGADSCGLSVVRLDLSGV------ 131 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 +LY + L I G+ LLL++ ++L R + R + Sbjct: 132 PLLYNLGGFGLLICGWALLLTLF----VVLELTRGLMRGSL 168 >gi|119719991|ref|YP_920486.1| NADH-plastoquinone oxidoreductase subunit 6 [Thermofilum pendens Hrk 5] gi|119525111|gb|ABL78483.1| conserved hypothetical NADH-plastoquinone oxidoreductase subunit 6 [Thermofilum pendens Hrk 5] Length = 161 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A+ SS L V V+ Y+ L F ++ A L LLG +VA+ +VYVGA ++F + Sbjct: 15 VAVASSLLAVKVKEDFYAAVLLGFVGLSVASLIALLGFTYVAVFHALVYVGATVLFVIMG 74 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 ++ + + G L S F G L Sbjct: 75 VIFIGRGLGYERRMLAAGVLTSVFAGSL 102 >gi|19481586|gb|AAL88865.1|AF407132_1 NADH dehydrogenase subunit 6 [Scaphidura oryzivora] Length = 159 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + A+P + Sbjct: 73 L------AADPYPE 80 >gi|11643361|gb|AAG39541.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643371|gb|AAG39546.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643379|gb|AAG39550.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643383|gb|AAG39552.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643385|gb|AAG39553.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643387|gb|AAG39554.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643389|gb|AAG39555.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643391|gb|AAG39556.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643393|gb|AAG39557.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643395|gb|AAG39558.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643397|gb|AAG39559.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643399|gb|AAG39560.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643401|gb|AAG39561.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643405|gb|AAG39563.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643407|gb|AAG39564.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643409|gb|AAG39565.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643411|gb|AAG39566.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643415|gb|AAG39568.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643417|gb|AAG39569.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643421|gb|AAG39571.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643423|gb|AAG39572.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643429|gb|AAG39575.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643431|gb|AAG39576.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643433|gb|AAG39577.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643435|gb|AAG39578.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643437|gb|AAG39579.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643439|gb|AAG39580.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643441|gb|AAG39581.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643443|gb|AAG39582.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643445|gb|AAG39583.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643447|gb|AAG39584.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643449|gb|AAG39585.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643451|gb|AAG39586.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus] gi|11643453|gb|AAG39587.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus] gi|11643455|gb|AAG39588.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus] gi|11643457|gb|AAG39589.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus] gi|11643459|gb|AAG39590.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus] Length = 172 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 20/158 (12%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + L D E Sbjct: 24 SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV-SLAAD-PYPEA 81 Query: 87 RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------RLVFKGNNVENIGKVL 138 G +G F +G++ V + F V G ++ RL F G VL Sbjct: 82 WGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTVNNVGVSFIRLDFGGA------AVL 135 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 Y+ A I G+ LLL++ ++L R + R I Sbjct: 136 YSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169 >gi|289183160|ref|YP_003457147.1| NADH dehydrogenase subunit 6 [Ophiocomina nigra] gi|288995517|emb|CBH40121.1| NADH dehydrogenase subunit 6 [Ophiocomina nigra] Length = 152 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 73/149 (48%), Gaps = 11/149 (7%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P +SVF ++ ++ + +F L G F +++ +++Y G ++V FLF ++ AE Sbjct: 13 SPYFSVFGILVQALSLSIIFCLFGFPFFSLLLILIYAGGMLVVFLFSTLL------TAE- 65 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN-IGKVLYTQYAYP 145 R + + L + +++ +V+S E ++ L F G N E +G + A Sbjct: 66 RHPESIVQEIVLFGLGSMIVIVP---LVYSWETPVNSLSFVGLNQEMLLGNLFSVPLAIV 122 Query: 146 LEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + F+LL++++G + + H R+ Sbjct: 123 TCVVAFVLLIALMGVLSINFEHTYSNLRK 151 >gi|164449790|ref|YP_001648844.1| NADH dehydrogenase subunit 6 [Sylvia crassirostris] gi|164414720|emb|CAP10146.1| NADH dehydrogenase subunit 6 [Sylvia crassirostris] Length = 172 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 SLFF ++ + V + +P Y V L+ A V G + LG FV+++ ++VY+G Sbjct: 9 SLFF-------VLGGWAVASNPSPYYGVVGLVVASVAGCGWLVSLGVSFVSLVLVMVYLG 61 Query: 65 AVIVFFLF 72 ++V F++ Sbjct: 62 GMLVVFVY 69 >gi|195934708|ref|YP_002120644.1| NADH dehydrogenase subunit 6 [Ailurus fulgens] gi|155368567|emb|CAM98583.1| NADH dehydrogenase subunit 6 [Ailurus fulgens] Length = 175 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 27/161 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M Sbjct: 25 SPIYGGLVLIVSGAVGCGIILSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV--------------- 131 K LG+F +G+L+ L C +++ EGE +VFK N + Sbjct: 85 SNKA-VLGAFILGLLSELLTAC---YILKDDEGE---VVFKFNGMGDWVIYDTGDSGFFS 137 Query: 132 -ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 E +G LY+ + + ++G+ LL IG +V+M R + Sbjct: 138 EEAMGIAALYSYGTWLVVVTGWSLL---IGVLVIMEVTRGN 175 >gi|115531621|ref|YP_784007.1| NADH dehydrogenase subunit 6 [Neofelis nebulosa] gi|78157547|gb|ABB22891.1| NADH dehydrogenase subunit 6 [Neofelis nebulosa] Length = 175 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A + L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGVGCAIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG F G+LA L C Sbjct: 85 SNKA-VLGMFITGVLAELLTAC 105 >gi|156142530|gb|ABU52030.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|155624532|gb|ABU24611.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 15/155 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSRLVFKGNNV-----ENIG- 135 K L F G+LA L C +VF G +++ + E +G Sbjct: 85 SNKA-VLAMFITGVLAELLTACYILKEDEVEVVFKFNGAGDWVIYDTGDSGFFSEEAMGI 143 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 LY+ + + I+G+ LL IG +V+M R + Sbjct: 144 AALYSYGTWLVVITGWSLL---IGVLVIMEVTRGN 175 >gi|157488887|gb|ABV57847.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|157488865|gb|ABV57836.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488867|gb|ABV57837.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488869|gb|ABV57838.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488871|gb|ABV57839.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488873|gb|ABV57840.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488877|gb|ABV57842.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488879|gb|ABV57843.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488881|gb|ABV57844.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488885|gb|ABV57846.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488891|gb|ABV57849.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488893|gb|ABV57850.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488895|gb|ABV57851.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488897|gb|ABV57852.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488899|gb|ABV57853.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488905|gb|ABV57856.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488909|gb|ABV57858.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488911|gb|ABV57859.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488913|gb|ABV57860.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|154818480|gb|ABS87692.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra] gi|154818484|gb|ABS87695.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra] gi|154818488|gb|ABS87698.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra] gi|154818506|gb|ABS87711.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra] gi|154818514|gb|ABS87717.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra] gi|154818518|gb|ABS87720.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818526|gb|ABS87726.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818530|gb|ABS87729.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818534|gb|ABS87732.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818538|gb|ABS87735.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818542|gb|ABS87738.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818570|gb|ABS87759.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818574|gb|ABS87762.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818578|gb|ABS87765.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818582|gb|ABS87768.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818593|gb|ABS87776.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818597|gb|ABS87779.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818605|gb|ABS87785.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818609|gb|ABS87788.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818613|gb|ABS87791.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818617|gb|ABS87794.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818621|gb|ABS87797.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818625|gb|ABS87800.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818629|gb|ABS87803.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818633|gb|ABS87806.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818637|gb|ABS87809.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818641|gb|ABS87812.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818649|gb|ABS87818.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818653|gb|ABS87821.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|155624348|gb|ABU24473.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624352|gb|ABU24476.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624356|gb|ABU24479.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624360|gb|ABU24482.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624364|gb|ABU24485.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624368|gb|ABU24488.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624372|gb|ABU24491.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624376|gb|ABU24494.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624384|gb|ABU24500.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624388|gb|ABU24503.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624392|gb|ABU24506.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624396|gb|ABU24509.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624400|gb|ABU24512.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624404|gb|ABU24515.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624408|gb|ABU24518.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624412|gb|ABU24521.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624416|gb|ABU24524.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624420|gb|ABU24527.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624424|gb|ABU24530.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624428|gb|ABU24533.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624432|gb|ABU24536.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624436|gb|ABU24539.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624440|gb|ABU24542.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624444|gb|ABU24545.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624448|gb|ABU24548.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624456|gb|ABU24554.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624464|gb|ABU24560.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624468|gb|ABU24563.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624472|gb|ABU24566.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624476|gb|ABU24569.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624480|gb|ABU24572.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624484|gb|ABU24575.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624488|gb|ABU24578.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624492|gb|ABU24581.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624496|gb|ABU24584.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624500|gb|ABU24587.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624504|gb|ABU24590.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624508|gb|ABU24593.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624516|gb|ABU24599.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624524|gb|ABU24605.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624528|gb|ABU24608.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624536|gb|ABU24614.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624540|gb|ABU24617.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624544|gb|ABU24620.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624548|gb|ABU24623.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624555|gb|ABU24628.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624559|gb|ABU24631.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624575|gb|ABU24643.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624595|gb|ABU24658.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624611|gb|ABU24670.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624615|gb|ABU24673.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624627|gb|ABU24682.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624631|gb|ABU24685.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624635|gb|ABU24688.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624639|gb|ABU24691.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624647|gb|ABU24697.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624655|gb|ABU24703.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624659|gb|ABU24706.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624663|gb|ABU24709.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624667|gb|ABU24712.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624675|gb|ABU24718.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624679|gb|ABU24721.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624687|gb|ABU24727.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624695|gb|ABU24733.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624703|gb|ABU24739.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624711|gb|ABU24745.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624715|gb|ABU24748.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624719|gb|ABU24751.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624723|gb|ABU24754.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624727|gb|ABU24757.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624735|gb|ABU24763.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624739|gb|ABU24766.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624743|gb|ABU24769.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624747|gb|ABU24772.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624751|gb|ABU24775.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624755|gb|ABU24778.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624763|gb|ABU24784.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624767|gb|ABU24787.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624771|gb|ABU24790.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624775|gb|ABU24793.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624779|gb|ABU24796.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624783|gb|ABU24799.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624787|gb|ABU24802.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624791|gb|ABU24805.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624811|gb|ABU24820.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 85 SNKA-VLAMFITGVLAELLTAC 105 >gi|156142512|gb|ABU52021.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142514|gb|ABU52022.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142516|gb|ABU52023.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142528|gb|ABU52029.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142544|gb|ABU52037.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142550|gb|ABU52040.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142552|gb|ABU52041.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142558|gb|ABU52044.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142560|gb|ABU52045.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142562|gb|ABU52046.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142586|gb|ABU52058.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|154818566|gb|ABS87756.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] Length = 175 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 85 SNKA-VLAMFITGVLAELLTAC 105 >gi|126792865|gb|ABO27284.1| NADH dehydrogenase subunit 6 [Brotogeris chiriri] Length = 167 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 34/57 (59%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++++ LV + +P Y L+F V G + LGA FVA+ +VY+G ++V F++ Sbjct: 13 VLAALLVASNPSPYYGAVGLVFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVY 69 >gi|157488901|gb|ABV57854.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488903|gb|ABV57855.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488907|gb|ABV57857.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|37596525|gb|AAQ95023.1| NADH dehydrogenase subunit 6 [Amadina erythrocephala] Length = 159 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 20/141 (14%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F F F ++ V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLFLGFCF--VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSA 117 +G ++V F++ + + A+P + G +G SF +G++ V F V Sbjct: 60 LGGMLVVFVYSVSL------AADPYPESWVDWGVVGYSFGMGLVVMVGFVIGGVFEVLVD 113 Query: 118 EGELS-------RLVFKGNNV 131 EG +S RL F G +V Sbjct: 114 EGTVSGGGLLSTRLDFSGVSV 134 >gi|19481582|gb|AAL88863.1|AF407130_1 NADH dehydrogenase subunit 6 [Junco hyemalis] Length = 159 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 14 LGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLIMVYLGGMLVVFVYSVSL 73 Query: 77 LDIDIEVAEPRKKR 90 AEP + Sbjct: 74 ------AAEPYPEA 81 >gi|16797934|gb|AAL29219.1| NADH dehydrogenase subunit 6 [Arenaria interpres] Length = 173 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFVY 69 >gi|154818661|gb|ABS87827.1| NADH dehydrogenase subunit 6 [Felis silvestris bieti] gi|155624380|gb|ABU24497.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 85 SNKA-VLAMFITGVLAELLTAC 105 >gi|21672445|ref|NP_660512.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008867|sp|Q8K9X9|NUOJ_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|21623058|gb|AAM67723.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 163 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 61/92 (66%), Gaps = 1/92 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY S +A+IS+ LV+ +N +YS+ LI + ++ +G+F + GA F + +V+Y GA+I Sbjct: 5 FYACSLIAVISTLLVIIQKNAVYSLLYLIISLLSISGIFFIFGAFFAGALEVVIYAGAII 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 V F+F+IMML++ + + ++K+ F+IG Sbjct: 65 VLFVFVIMMLNLG-KKNDLQEKKYLNPIFWIG 95 >gi|154818657|gb|ABS87824.1| NADH dehydrogenase subunit 6 [Felis silvestris bieti] Length = 173 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 23 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 82 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 83 SNKA-VLAMFITGVLAELLTAC 103 >gi|84626825|gb|ABC59816.1| NADH dehydrogenase subunit 6 [Psittacus erithacus] Length = 171 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII-M 75 +++ LV + +P Y V L+ V G + LG FV+++ +VY+G ++V F++ + + Sbjct: 14 LAALLVASNPSPHYGVVGLVLGSVAGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYCVSL 73 Query: 76 MLDIDIEVAEPRKKRGF 92 D +V E + G+ Sbjct: 74 AADPFPQVWEGWRVVGY 90 >gi|219524187|ref|YP_002456332.1| NADH dehydrogenase subunit 6 [Sacalia quadriocellata] gi|117649858|gb|ABK53946.1| NADH dehydrogenase subunit 6 [Sacalia quadriocellata] Length = 175 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 36/64 (56%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G F++++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFISLVLFLIYLGGM 63 Query: 67 IVFF 70 +V F Sbjct: 64 LVIF 67 >gi|156142548|gb|ABU52039.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|11643413|gb|AAG39567.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 28/162 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + L D E Sbjct: 24 SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV-SLAAD-PYPEA 81 Query: 87 RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135 G +G F +G++ ++V A VF ++ G V N+G Sbjct: 82 WGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVLVDGGTVNNVGVSFIRLDFGG 131 Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 VLY+ A I G+ LLL++ ++L R + R I Sbjct: 132 VAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169 >gi|156142546|gb|ABU52038.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142588|gb|ABU52059.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142590|gb|ABU52060.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 7 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 66 Query: 76 MLDIDIEVAEPRKK 89 + AEP + Sbjct: 67 L------AAEPYPE 74 >gi|11643461|gb|AAG39591.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643463|gb|AAG39592.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643465|gb|AAG39593.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643467|gb|AAG39594.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643469|gb|AAG39595.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643471|gb|AAG39596.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643475|gb|AAG39598.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643477|gb|AAG39599.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643479|gb|AAG39600.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643481|gb|AAG39601.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643483|gb|AAG39602.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643485|gb|AAG39603.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643487|gb|AAG39604.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643489|gb|AAG39605.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643491|gb|AAG39606.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643493|gb|AAG39607.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643495|gb|AAG39608.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643497|gb|AAG39609.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643499|gb|AAG39610.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643501|gb|AAG39611.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643503|gb|AAG39612.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643505|gb|AAG39613.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643507|gb|AAG39614.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643509|gb|AAG39615.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643511|gb|AAG39616.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643513|gb|AAG39617.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643515|gb|AAG39618.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643517|gb|AAG39619.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643519|gb|AAG39620.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643521|gb|AAG39621.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643523|gb|AAG39622.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643525|gb|AAG39623.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643527|gb|AAG39624.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643529|gb|AAG39625.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643531|gb|AAG39626.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643533|gb|AAG39627.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] Length = 172 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 28/162 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + L D E Sbjct: 24 SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV-SLAAD-PYPEA 81 Query: 87 RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135 G +G F +G++ ++V A VF ++ G V N+G Sbjct: 82 WGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVLVDGGTVNNVGVSFVRLDFGG 131 Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 VLY+ A I G+ LLL++ ++L R + R I Sbjct: 132 VAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169 >gi|16797944|gb|AAL29224.1| NADH dehydrogenase subunit 6 [Tringa nebularia] Length = 173 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFVY 69 >gi|254382673|ref|ZP_04998031.1| integral membrane efflux protein [Streptomyces sp. Mg1] gi|194341576|gb|EDX22542.1| integral membrane efflux protein [Streptomyces sp. Mg1] Length = 1042 Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 5/79 (6%) Query: 5 SLFFYLFSFMAIISSFLVVTVRN---PIYSVFSLIFAFVNAAGLFLLLGAEF--VAMITL 59 SLF +F+ +AI+ LV T R+ P+ + S+ FA A GL ++ G AMI + Sbjct: 853 SLFLAMFAAIAIVFMLLVATFRSLVQPLILLVSIPFAATGALGLLIVTGTPMGVPAMIGM 912 Query: 60 VVYVGAVIVFFLFIIMMLD 78 ++ +G V+ + +I +++ Sbjct: 913 LMLIGIVVTNAIVLIDLVN 931 >gi|37596529|gb|AAQ95025.1| NADH dehydrogenase subunit 6 [Amandava formosa] Length = 159 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 16/134 (11%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV- 71 Query: 76 MLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------RLVFK 127 L D E G +G F +G++ ++ S F V +G + RL F Sbjct: 72 SLAAD-PYPESWADWGVVGYGFGMGLVVMVGLIVGSVFGVLVEDGTVDGGGLLSIRLDFS 130 Query: 128 GNNVENIGKVLYTQ 141 G VLY+Q Sbjct: 131 GV------AVLYSQ 138 >gi|325126731|ref|YP_004285878.1| NADH dehydrogenase subunit 6 [Sturnus tristis] gi|324022947|gb|ADY15514.1| NADH dehydrogenase subunit 6 [Sturnus tristis] Length = 172 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 I+ V + +P Y V L+ A V G + LG FV ++ ++VY+G ++V F++ Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVGLVLVMVYLGGMLVVFVY 69 >gi|84488662|ref|YP_448801.1| NADH dehydrogenase subunit 6 [Testudo graeca] gi|67005605|gb|AAY62405.1| NADH dehydrogenase subunit 6 [Testudo graeca] Length = 174 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y VFSL+ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKR 90 +V F + + AEP Sbjct: 64 MVIFAYSCAL------AAEPYPGS 81 >gi|161561807|ref|YP_001586121.1| NADH dehydrogenase subunit 6 [Phoenicopterus ruber roseus] gi|143024707|gb|ABO93082.1| NADH dehydrogenase subunit 6 [Phoenicopterus ruber roseus] Length = 173 Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|66276085|ref|YP_238228.1| NADH dehydrogenase subunit 6 [Gavia stellata] gi|34223664|gb|AAQ63019.1| NADH dehydrogenase subunit 6 [Gavia stellata] Length = 173 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F L S I+ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFVLLLSVCFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 G ++V F++ + + D E + G+ G+ F +L A ++V Sbjct: 61 GGMLVVFVYSVSLAADPFPEAWGDWRVMGY-GAGFALVLTAGVVV 104 >gi|240266656|ref|YP_002971033.1| NADH dehydrogenase subunit 6 [Cygnus atratus] gi|209887461|gb|ACI95078.1| NADH dehydrogenase subunit 6 [Cygnus atratus] Length = 173 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLGGMLVVFVYSVAL------AAEP 77 >gi|302201507|gb|ADL09071.1| NADH dehydrogenase subunit 6 [Geopelia striata] Length = 173 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 24 SPYYGVVGLVVASVTGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|313662241|gb|ADR72186.1| NADH dehydrogenase subunit 6 [Polytomella sp. SAG 63-9] Length = 116 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%) Query: 36 IFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 I ++N LLG EF+A+I +VYVGA+ V FLF++M++ + Sbjct: 4 ILLYINVQLFLTLLGFEFMALIYALVYVGALAVLFLFVVMLIRVQ 48 >gi|11643473|gb|AAG39597.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] Length = 172 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 28/162 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + L D E Sbjct: 24 SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV-SLAAD-PYPEA 81 Query: 87 RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135 G +G F +G++ ++V A VF ++ G V N+G Sbjct: 82 WGDWGVVGYGFGMGMV---IVVGAVVSGVF-------EVMVDGGTVNNVGVSFVRLDFGG 131 Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 VLY+ A I G+ LLL++ ++L R + R I Sbjct: 132 VAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169 >gi|9230600|gb|AAF85926.1|AF171659_2 NADH dehydrogenase subunit 6 [Carduelis hornemanni] Length = 172 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 + S V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 14 LGSLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|25057779|ref|NP_740008.1| NADH dehydrogenase subunit 6 [Indostomus paradoxus] gi|25005983|dbj|BAC23604.1| NADH dehydrogenase subunit 6 [Indostomus paradoxus] Length = 170 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 12/158 (7%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y F L+ A G+ + GA F+A+I +VY+G ++V F + + Sbjct: 19 VASNPSPYYGAFGLVVAGGMGCGILVSHGAAFLALILFLVYLGGMLVVFAYAAAL----- 73 Query: 82 EVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAE---GELSRLVFKGNNVENIGK 136 AEP + G + ++G+ L + AS F+ +E GE + G ++ + Sbjct: 74 -AAEPYPEGLLSGEVAIYVGVYVLVLFLGASMFLGNWSESEAGEFEGFLVWGGDMSGVSA 132 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V +A L + ++LL+++ + ++ H R R Sbjct: 133 VYAEGWAI-LMLGAWVLLMTLFVVLEVIRGHARGALRA 169 >gi|195934722|ref|YP_002120657.1| NADH dehydrogenase subunit 6 [Meles meles] gi|155368609|emb|CAM98622.1| NADH dehydrogenase subunit 6 [Meles meles] Length = 177 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 18/107 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY +LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLALIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 K LG+F +G+L+ L+ C + KG++VE Sbjct: 85 SNKA--VLGAFVVGLLSELLMAC---------------YILKGDDVE 114 >gi|16797925|gb|AAL29215.1| NADH dehydrogenase subunit 6 [Calidris tenuirostris] Length = 173 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 7/132 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFI----GILAAELIVCASNFMVFSAE 118 G ++V F++ + + D E + G+ SF + G++ L+ C +V Sbjct: 61 GGMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFILVLIAGVIVGGLVECWKVGVVTVDS 120 Query: 119 GE--LSRLVFKG 128 G L RL F G Sbjct: 121 GGMFLVRLDFSG 132 >gi|156142542|gb|ABU52036.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 155 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 18/114 (15%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + + AEP Sbjct: 7 SPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVSL------AAEP 60 Query: 87 RKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------RLVFKG 128 + G +G F +G++ A +V + +EG ++ RL F G Sbjct: 61 YPEAWGNFGVVGYGFGMGLVVAVGLVMSGTTGALVSEGTVNSGGLLSVRLDFSG 114 >gi|20340062|gb|AAM19666.1| NADH dehydrogenase subunit 6 [Calidris acuminata] Length = 173 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFVY 69 >gi|325126661|ref|YP_004285813.1| NADH dehydrogenase subunit 6 [Leptotila verreauxi] gi|304365585|gb|ADM26389.1| NADH dehydrogenase subunit 6 [Leptotila verreauxi] Length = 173 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 24 SPYYGVVGLVVASVTGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|1171829|sp|P43189|NU6M_AETCR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394654|emb|CAA52133.1| NADH dehydrogenase subunit 6 [Aethia cristatella] Length = 173 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ S V + +P Y V L+ A + G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGSLAVASNPSPYYGVVGLVLASIAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|219524162|ref|YP_002456309.1| NADH dehydrogenase subunit 6 [Accipiter gentilis] gi|218783311|dbj|BAH03680.1| NADH dehydrogenase subunit 6 [Accipiter gentilis] Length = 172 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 M Sbjct: 73 M 73 >gi|83309070|ref|YP_423948.1| NADH dehydrogenase subunit 6 [Cathartes aura] gi|38373484|gb|AAR19060.1| NADH dehydrogenase subunit 6 [Cathartes aura] Length = 173 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 75 MMLDIDIEVAEPRKKRGF 92 + D E R+ G+ Sbjct: 73 LAADPFPEAWGDRRVVGY 90 >gi|66276071|ref|YP_238215.1| NADH dehydrogenase subunit 6 [Larus dominicanus] gi|34223678|gb|AAQ63032.1| NADH dehydrogenase subunit 6 [Larus dominicanus] Length = 173 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|16797921|gb|AAL29213.1| NADH dehydrogenase subunit 6 [Xenus cinereus] Length = 173 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|19481588|gb|AAL88866.1|AF407133_1 NADH dehydrogenase subunit 6 [Molothrus bonariensis] Length = 159 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + A+P + Sbjct: 73 L------AADPYPE 80 >gi|295065526|ref|YP_003587304.1| NADH dehydrogenase subunit 6 [Otis tarda] gi|223951409|gb|ACN29662.1| ND6 [Otis tarda] Length = 173 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ V G L LGA FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLLSLGASFVSLVLFMVYLGGMLVVFVY 69 >gi|1171850|sp|P43206|NU6M_SYNWU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394688|emb|CAA52124.1| NADH dehydrogenase subunit 6 [Synthliboramphus wumizusume] Length = 173 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 + D E + G+ G FI +LAA +V Sbjct: 73 LAADPFPEAWGDWRVVGY-GVSFIVVLAAGAVV 104 >gi|291612287|ref|YP_003540720.1| NADH dehydrogenase subunit 6 [Columba livia] gi|290775870|gb|ADD62365.1| NADH dehydrogenase subunit 6 [Columba livia] Length = 173 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FF FSF ++ + + +P Y V L+ A V G L LG F++++ +VY+G Sbjct: 5 VFFLGFSF--VLGGLGMASNPSPYYGVVGLVVASVTGCGWLLSLGVSFMSLVLFMVYLGG 62 Query: 66 VIVFFLF 72 ++V F++ Sbjct: 63 MLVVFVY 69 >gi|155624619|gb|ABU24676.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624691|gb|ABU24730.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 85 SNKA-VLTMFITGVLAELLTAC 105 >gi|21449944|ref|NP_659361.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|21425436|emb|CAD21743.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|150372681|dbj|BAF66143.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|290544739|gb|ADD37191.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] Length = 175 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 17/156 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSRLVFKGNNV-----ENIG 135 K LG+F +G+L+ L+VC +VF G +V+ + E +G Sbjct: 85 SNKAV--LGAFIVGLLSELLLVCYILKDDEADVVFGFNGMGDWVVYDTGDSGFFSEEAMG 142 Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 LY+ + + ++G+ LL +G +V+M R + Sbjct: 143 IAALYSYGTWLVVVTGWSLL---VGVLVIMEITRGN 175 >gi|325126787|ref|YP_004285930.1| NADH dehydrogenase subunit 6 [Bucorvus leadbeateri] gi|304365515|gb|ADM26324.1| NADH dehydrogenase subunit 6 [Bucorvus leadbeateri] Length = 173 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG F+A++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFIALVLFMVYLGGMLVVFVY 69 >gi|258649489|ref|YP_003204772.1| NADH dehydrogenase subunit 6 [Hemiphaga novaeseelandiae] gi|201066603|gb|ACH92649.1| NADH dehydrogenase subunit 6 [Hemiphaga novaeseelandiae] Length = 173 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A + G L LG FV+++ +VY+G ++V F++ Sbjct: 24 SPYYGVVGLVVASITGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|121534368|ref|ZP_01666192.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Thermosinus carboxydivorans Nor1] gi|121307138|gb|EAX48056.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Thermosinus carboxydivorans Nor1] Length = 168 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 6/143 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI-D 80 VV RN ++S L F+ AGL++LL A+F+A + ++VY GAV V + +M+ D Sbjct: 24 VVFKRNLVHSALLLALTFIGVAGLYVLLQADFLAAVQVLVYNGAVAVIVVIGVMVTQRGD 83 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT 140 ++ + P G+ + + +I V + L+ I ++L Sbjct: 84 MKSSNPSNSLGWKAAAVAAVFTGMIIAA-----VAATPWPLAAAPPAAATAPAIAEILLR 138 Query: 141 QYAYPLEISGFILLLSMIGAIVL 163 +A E + +LL++M+GAI+L Sbjct: 139 DFAVAFETAAVLLLVAMMGAIIL 161 >gi|327555423|gb|AEB01042.1| NADH dehydrogenase subunit 6 [Crocodylus acutus] gi|327555437|gb|AEB01055.1| NADH dehydrogenase subunit 6 [Crocodylus intermedius] Length = 175 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 40/71 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G ++ Sbjct: 5 FFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD 78 V F F + D Sbjct: 65 VVFAFCVGFTD 75 >gi|326535921|ref|YP_004300366.1| NADH dehydrogenase subunit 6 [Crocodylus moreletii] gi|312844614|gb|ADR03180.1| NADH dehydrogenase subunit 6 [Crocodylus moreletii] Length = 175 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 40/71 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G ++ Sbjct: 5 FFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD 78 V F F + D Sbjct: 65 VVFAFCVGFTD 75 >gi|322422491|ref|YP_004222069.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|322422492|ref|YP_004222070.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525910|gb|ADW41480.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525911|gb|ADW41481.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525929|gb|ADW41497.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525932|gb|ADW41499.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525935|gb|ADW41501.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525938|gb|ADW41503.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525941|gb|ADW41505.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525958|gb|ADW41516.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525960|gb|ADW41517.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525962|gb|ADW41518.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525964|gb|ADW41519.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525966|gb|ADW41520.1| NADH dehydrogenase subunit 6 [Aceros waldeni] Length = 173 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG F+A++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFIALVLFMVYLGGMLVVFVY 69 >gi|224588048|ref|YP_002640576.1| NADH dehydrogenase subunit 6 [Coturnicops exquisitus] gi|224471593|dbj|BAH24086.1| NADH dehydrogenase subunit 6 [Coturnicops exquisitus] Length = 173 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V FL+ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGLSFVSLVLFMVYLGGMLVVFLY 69 >gi|148265758|ref|YP_001232464.1| cytochrome c biogenesis protein, transmembrane region [Geobacter uraniireducens Rf4] gi|146399258|gb|ABQ27891.1| cytochrome c biogenesis protein, transmembrane region [Geobacter uraniireducens Rf4] Length = 246 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 26/153 (16%) Query: 33 FSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV--IVFFLFIIMMLDIDIEVAEPR--- 87 F+ +F + A+ F+ G A +T + VG V +VF + + + DI + + E R Sbjct: 71 FTFVFVLLGASATFI--GGFLQAHMTALRRVGGVLIVVFGIHVSGIFDIGVLLGEKRLTL 128 Query: 88 --KKRGFLGSFFIGI-LAAELIVC-----ASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 K GF GSF +G+ AA C AS MV + E + R IG +L Sbjct: 129 HRKPAGFFGSFVVGVAFAAGWTPCIGPILASILMVAATESTVYR---------GIGLLL- 178 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 Y+ L I F+ L+M +VL R ++ I+ Sbjct: 179 -AYSMGLAIPFFLASLAMHQFLVLFTRFKKYIR 210 >gi|37886710|gb|AAR04680.1| NADH dehydrogenase subunit 6 [Coragyps atratus] Length = 170 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 75 MMLDIDIEVAEPRKKRGF 92 + D E R+ G+ Sbjct: 73 LAADPFPEAWGDRRVVGY 90 >gi|257051783|ref|YP_003129616.1| NADH dehydrogenase subunit J [Halorhabdus utahensis DSM 12940] gi|256690546|gb|ACV10883.1| NADH dehydrogenase subunit J [Halorhabdus utahensis DSM 12940] Length = 90 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 44/75 (58%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V++ + F LF+ + +S VV VR+ ++ L A ++ A +++ A FVA + ++V Sbjct: 3 VLELIAFGLFALTTVGASLGVVLVRDVWHAALMLGIALLSVAVFYVMNQAPFVAAMQVLV 62 Query: 62 YVGAVIVFFLFIIMM 76 YVG V++ F +M+ Sbjct: 63 YVGGVLILISFAVML 77 >gi|27819327|ref|NP_777301.1| NADH dehydrogenase subunit 6 [Eudyptula minor] gi|27764475|gb|AAO23039.1|AF362763_13 NADH dehydrogenase subunit 6 [Eudyptula minor] Length = 172 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLASVMGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|326535908|ref|YP_004300354.1| NADH dehydrogenase subunit 6 [Emberiza tristrami] gi|325305658|gb|ADZ10822.1| NADH dehydrogenase subunit 6 [Emberiza tristrami] Length = 172 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LF ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G Sbjct: 3 LFVLFLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGG 62 Query: 66 VIVFFLF 72 ++V F++ Sbjct: 63 MLVVFVY 69 >gi|138892893|ref|YP_001127602.1| NADH dehydrogenase subunit 6 [Ursus thibetanus formosanus] gi|195933648|ref|YP_002117941.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus] gi|117649944|gb|ABK54011.1| NADH dehydrogenase subunit 6 [Ursus thibetanus formosanus] gi|148910928|gb|ABR18510.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus] gi|151384883|gb|ABS11106.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus] gi|195182356|emb|CAQ68415.1| NADH dehydrogenase subunit 6 [Ursus thibetanus] Length = 175 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 29/162 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ +VY+G ++V F + M EV Sbjct: 25 SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV-------------- 131 K LG+F +G+L+ LI C + + + +VFK N V Sbjct: 85 SNKAV--LGAFIVGLLSELLIAC------YVLKDDEVEIVFKFNGVGDWVIYDTGDSGFF 136 Query: 132 --ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 E +G LY+ + + ++G+ LL IG +V+M R + Sbjct: 137 SEEAMGIAALYSYGTWLVIVTGWSLL---IGVLVIMEVTRGN 175 >gi|327555451|gb|AEB01068.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] gi|327555465|gb|AEB01081.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] Length = 175 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 40/71 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G ++ Sbjct: 5 FFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD 78 V F F + D Sbjct: 65 VVFAFCVGFTD 75 >gi|116734736|ref|YP_842372.1| NADH dehydrogenase subunit 6 [Dryocopus pileatus] gi|109676628|gb|ABG37719.1| NADH dehydrogenase subunit 6 [Dryocopus pileatus] Length = 173 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 I+ V + +P Y V L+ A V G L +G FVA++ +VY+G ++V F++ Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSVGVSFVALVLFMVYLGGMLVVFVY 69 >gi|195933661|ref|YP_002117956.1| NADH dehydrogenase subunit 6 [Ursus thibetanus thibetanus] gi|146221817|gb|ABQ12046.1| NADH dehydrogenase subunit 6 [Ursus thibetanus thibetanus] Length = 175 Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ +VY+G ++V F + M EV Sbjct: 25 SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133 K LG+F +G+L+ LI C + + + +VFK N V + Sbjct: 85 SNKAV--LGAFIVGLLSELLIAC------YVLKDDEVEIVFKFNGVGD 124 >gi|281424347|ref|ZP_06255260.1| NADH dehydrogenase I, subunit 6 [Prevotella oris F0302] gi|281401616|gb|EFB32447.1| NADH dehydrogenase I, subunit 6 [Prevotella oris F0302] Length = 173 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 25/178 (14%) Query: 10 LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F +A++ S+ + V + + S L+F AG++ LL F+ + VY G + Sbjct: 6 MFCILAVVILGSAIMCVLTKRIMRSATFLLFVLFGVAGIYFLLDYTFLGAAQISVYAGGI 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSF------------FIGILAAELIVCASNFMV 114 + ++F I++ R +G + F +G++ L++ +NF Sbjct: 66 TMMYIF-------AIQLVSKRTLQGLVERFKGSRVVNGILLSIVGLVTVGLVLIKNNFYN 118 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + + + + +G Y QY P E LL +IG I M+ + D K Sbjct: 119 AAMQATDTEVPMEQIGTALLGSDKY-QYVLPFEFISLFLLACIIGGI--MIARKEDNK 173 >gi|37596555|gb|AAQ95038.1| NADH dehydrogenase subunit 6 [Lonchura griseicapilla] Length = 159 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVCLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596557|gb|AAQ95039.1| NADH dehydrogenase subunit 6 [Heteromunia pectoralis] Length = 159 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 RKKR 90 + Sbjct: 78 YPES 81 >gi|325149529|ref|YP_004285982.1| NADH dehydrogenase subunit 6 [Zenaida auriculata] gi|304365543|gb|ADM26350.1| NADH dehydrogenase subunit 6 [Zenaida auriculata] Length = 172 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FVA++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVVGLVLASVAGCGWLVSLGVSFVALVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 RKK 89 + Sbjct: 78 YPE 80 >gi|1304717|gb|AAA99081.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei] Length = 173 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|1171830|sp|P43190|NU6M_AETPU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394656|emb|CAA52131.1| NADH dehydrogenase subunit 6 [Aethia pusilla] Length = 173 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASKPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|1171847|sp|P43203|NU6M_PTYAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394682|emb|CAA52129.1| NADH dehydrogenase subunit 6 [Ptychoramphus aleuticus] Length = 173 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|1171842|sp|P43199|NU6M_CYCPS RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394672|emb|CAA52130.1| NADH dehydrogenase subunit 6 [Cyclorrhynchus psittacula] Length = 173 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|84488772|ref|YP_448814.1| NADH dehydrogenase subunit 6 [Manouria emys] gi|67005631|gb|AAY62429.1| NADH dehydrogenase subunit 6 [Manouria emys] Length = 174 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 35/66 (53%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SL+ + G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMIGVSCSSSPYYGVLSLVLGAASGCGVLVGMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLF 72 +V F + Sbjct: 64 LVIFAY 69 >gi|13541941|ref|NP_111629.1| NADH dehydrogenase subunit J [Thermoplasma volcanium GSS1] gi|14325372|dbj|BAB60276.1| NADH dehydrogenase I chain G [Thermoplasma volcanium GSS1] Length = 82 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 19 SFLVVTVRNPIYS-VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 S L V +N +S ++ +F F+ AA FL LGA FVA + ++VY+GAV+ +F +M+ Sbjct: 18 SVLSVKEKNITHSAIYLFLFLFILAAE-FLFLGASFVAAVEILVYIGAVVTLIVFTVML 75 >gi|187250403|ref|YP_001874825.1| NADH dehydrogenase subunit 6 [Mecistops cataphractus] gi|145315408|gb|ABP62970.1| NADH dehydrogenase subunit 6 [Mecistops cataphractus] Length = 175 Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ F+L M ++S LV Y V SL+FA + +GL + G FV ++ L++Y Sbjct: 1 MGTMLFFLCCLM-MVSVVLVAFGVTIHYGVVSLLFAAMFGSGLLVAGGGSFVPLVVLLIY 59 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRG 91 +G ++V F F + D + E +G Sbjct: 60 LGGMLVVFAFCVGFTDDEYCEFWGAGGSKG 89 >gi|242097249|emb|CAY39926.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] Length = 153 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ +VY+G ++V F + M Sbjct: 3 SPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWV 62 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ LI C Sbjct: 63 SNKA-VLGAFIVGLLSELLIAC 83 >gi|89274126|ref|YP_514831.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] gi|89146661|gb|ABD62293.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] gi|90576922|gb|ABD95516.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] gi|90576936|gb|ABD95529.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] gi|90576950|gb|ABD95542.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] Length = 172 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|66276029|ref|YP_238280.1| NADH dehydrogenase subunit 6 [Branta canadensis] gi|63004247|gb|AAY25515.1| NADH dehydrogenase subunit 6 [Branta canadensis] Length = 173 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG F+A++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVAGCGWLLGLGVSFLALVLFMVYLGGMLVVFVYSVAL------AAEP 77 >gi|5081455|gb|AAD39390.1|AF123910_1 NADH dehydrogenase subunit 6 [Grus japonensis] gi|224504078|gb|ACN53656.1| NADH dehydrogenase subunit 6 [Grus japonensis] Length = 173 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFMFFMGMCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFVY 69 >gi|2789675|gb|AAB96918.1| NADH-ubiquinone oxidoreductase subunit 6 [Geomys personatus] Length = 174 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 15 AIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 A++ FLVV V+ +PIY+ LI + GL L G ++ ++ ++Y+G ++V F Sbjct: 12 AMVVGFLVVAVKPSPIYAGLGLIISGGAGCGLLLYHGCSYMGLMVYLIYLGGMLVVF 68 >gi|326535963|ref|YP_004300405.1| NADH dehydrogenase subunit 6 [Crocodylus johnsoni] gi|312227691|gb|ADQ52682.1| NADH dehydrogenase subunit 6 [Crocodylus johnsoni] Length = 175 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 39/71 (54%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + + S LV + Y V SL+FA + +GL + G F+ ++ L++Y+G ++ Sbjct: 5 FFLLCCLMMASVVLVASGVAIHYGVVSLLFAAMFGSGLLAMGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD 78 V F F + D Sbjct: 65 VVFAFCVGFTD 75 >gi|134303115|ref|YP_001122872.1| NADH dehydrogenase subunit 6 [Macrochelys temminckii] gi|116739705|gb|ABK20577.1| NADH dehydrogenase subunit 6 [Macrochelys temminckii] Length = 176 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V SL+ + + +++G FV+++ ++Y+G ++V F + + VAEP Sbjct: 24 SPYYGVLSLVLGAASGCAVLVVMGGSFVSLVLFLIYLGGMLVLFAYSAAL------VAEP 77 Query: 87 RK 88 R Sbjct: 78 RP 79 >gi|1171831|sp|P43191|NU6M_AETPY RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394658|emb|CAA52132.1| NADH dehydrogenase subunit 6 [Aethia pygmaea] Length = 173 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|213026362|ref|ZP_03340809.1| hypothetical protein Salmonelentericaenterica_29535 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 62 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 26/35 (74%) Query: 45 LFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 +F LGA F + ++VY GA++V F+F++MML++ Sbjct: 8 VFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNL 42 >gi|327492833|ref|YP_004347715.1| NADH dehydrogenase subunit 6 [Tylerius spinosissimus] gi|327392656|dbj|BAK10079.1| NADH dehydrogenase subunit 6 [Tylerius spinosissimus] Length = 173 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 11/113 (9%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 T P Y VF+L+ + G +L G F++++ L++Y+G ++V F++ L D + Sbjct: 21 TNPAPFYGVFNLVLVALLCCGAIILHGGTFLSLVLLLIYMGGMLVVFIY-SSALSADKDP 79 Query: 84 AEPRKKR------GFLGSFFIGILAAELIVCASNFMVFSAEGELSR-LVFKGN 129 P + G+ SF +G+L ++ + + GEL VF+G+ Sbjct: 80 EAPTGWQVSLFFFGYF-SFVLGVLGMSTVL--EEEVWWGVSGELDWDTVFRGD 129 >gi|37596457|gb|AAQ94989.1| NADH dehydrogenase subunit 6 [Uraeginthus ianthinogaster] Length = 159 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|73672479|gb|AAZ80420.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672482|gb|AAZ80422.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672485|gb|AAZ80424.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672488|gb|AAZ80426.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672491|gb|AAZ80428.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672494|gb|AAZ80430.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672497|gb|AAZ80432.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672500|gb|AAZ80434.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672503|gb|AAZ80436.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672512|gb|AAZ80442.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672515|gb|AAZ80444.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672518|gb|AAZ80446.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672521|gb|AAZ80448.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672524|gb|AAZ80450.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672527|gb|AAZ80452.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672530|gb|AAZ80454.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319558|gb|ABA02924.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319561|gb|ABA02926.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319564|gb|ABA02928.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319567|gb|ABA02930.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319570|gb|ABA02932.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319573|gb|ABA02934.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319576|gb|ABA02936.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319579|gb|ABA02938.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319582|gb|ABA02940.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319585|gb|ABA02942.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319588|gb|ABA02944.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319591|gb|ABA02946.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319594|gb|ABA02948.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319597|gb|ABA02950.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319600|gb|ABA02952.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319603|gb|ABA02954.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319606|gb|ABA02956.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319609|gb|ABA02958.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319612|gb|ABA02960.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319615|gb|ABA02962.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319618|gb|ABA02964.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319621|gb|ABA02966.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319624|gb|ABA02968.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319627|gb|ABA02970.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319630|gb|ABA02972.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319633|gb|ABA02974.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319636|gb|ABA02976.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319639|gb|ABA02978.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319642|gb|ABA02980.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319645|gb|ABA02982.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319648|gb|ABA02984.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319651|gb|ABA02986.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319654|gb|ABA02988.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319657|gb|ABA02990.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319660|gb|ABA02992.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319663|gb|ABA02994.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] Length = 168 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ + V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 16 VLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 75 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 76 L------AADPYPES 84 >gi|93007406|ref|YP_581747.1| NADH dehydrogenase subunit 6 [Platysternon megacephalum] gi|78157480|gb|ABB22855.1| NADH dehydrogenase subunit 6 [Platysternon megacephalum] Length = 174 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLI + G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVLSLILGAASGCGVLVSVGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRK 88 +V F + + VAEP Sbjct: 64 LVIFAYSAAL------VAEPYP 79 >gi|37596445|gb|AAQ94983.1| NADH dehydrogenase subunit 6 [Pytilia hypogrammica] gi|37596447|gb|AAQ94984.1| NADH dehydrogenase subunit 6 [Pytilia phoenicoptera] Length = 159 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 24/138 (17%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 ILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------R 123 + A+P + G +G F +G++ + A F V + G + R Sbjct: 73 L------AADPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLTDGGTVDSGGLLSVR 126 Query: 124 LVFKGNNVENIGKVLYTQ 141 L F G VLY+Q Sbjct: 127 LDFGGA------AVLYSQ 138 >gi|37596449|gb|AAQ94985.1| NADH dehydrogenase subunit 6 [Pytilia lineata] Length = 159 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 24/138 (17%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 ILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------R 123 + A+P + G +G F +G++ + A F V + G + R Sbjct: 73 L------AADPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLTDGGTVDSGGLLSVR 126 Query: 124 LVFKGNNVENIGKVLYTQ 141 L F G VLY+Q Sbjct: 127 LDFGGA------AVLYSQ 138 >gi|82395883|gb|ABB72511.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] gi|327555493|gb|AEB01107.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] Length = 175 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 40/71 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G ++ Sbjct: 5 FFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD 78 V F F + D Sbjct: 65 VVFAFCVGFTD 75 >gi|1304714|gb|AAA99079.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei] gi|1304722|gb|AAA99084.1| NADH dehydrogenase subunit 6 [Grus antigone antigone] Length = 173 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|73672089|gb|AAZ80412.1| NADH dehydrogenase subunit 6 [Sitta pusilla] Length = 172 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ + V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|5081447|gb|AAD39386.1|AF123906_1 NADH dehydrogenase subunit 6 [Grus grus] gi|5081449|gb|AAD39387.1|AF123907_1 NADH dehydrogenase subunit 6 [Grus monacha] gi|224504106|gb|ACN53682.1| NADH dehydrogenase subunit 6 [Grus grus] gi|224504120|gb|ACN53695.1| NADH dehydrogenase subunit 6 [Grus monacha] Length = 173 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|1304709|gb|AAA99076.1| NADH dehydrogenase subunit 6 [Grus antigone gillae] Length = 173 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|73672056|gb|AAZ80390.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672059|gb|AAZ80392.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672062|gb|AAZ80394.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672065|gb|AAZ80396.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672068|gb|AAZ80398.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672071|gb|AAZ80400.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672074|gb|AAZ80402.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672077|gb|AAZ80404.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672080|gb|AAZ80406.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672083|gb|AAZ80408.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672086|gb|AAZ80410.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319665|gb|ABA02995.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319669|gb|ABA02998.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319672|gb|ABA03000.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319675|gb|ABA03002.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319678|gb|ABA03004.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319681|gb|ABA03006.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319684|gb|ABA03008.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319687|gb|ABA03010.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319690|gb|ABA03012.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319693|gb|ABA03014.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319696|gb|ABA03016.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319698|gb|ABA03017.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] Length = 172 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ + V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|73672506|gb|AAZ80438.1| NADH dehydrogenase subunit 6 [Sitta pusilla] gi|73672509|gb|AAZ80440.1| NADH dehydrogenase subunit 6 [Sitta pusilla] Length = 168 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ + V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 16 VLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 75 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 76 L------AADPYPES 84 >gi|16082007|ref|NP_394424.1| NADH dehydrogenase subunit J [Thermoplasma acidophilum DSM 1728] gi|10640279|emb|CAC12093.1| NADH dehydrogenase, chain J related protein [Thermoplasma acidophilum] Length = 82 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Query: 10 LFSFMAI-ISSFLVVTVR--NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +FS +AI + +F V++VR N +SV L + A FL +GA F+A + ++VY+GAV Sbjct: 6 IFSLIAIFLIAFSVMSVREKNLTHSVIYLFLFLIILASEFLFIGASFIAAVEVLVYIGAV 65 Query: 67 IVFFLFIIMM 76 + F +M+ Sbjct: 66 VTILAFTVML 75 >gi|157488889|gb|ABV57848.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|5081433|gb|AAD39379.1|AF123899_1 NADH dehydrogenase subunit 6 [Grus carunculatus] gi|224504022|gb|ACN53604.1| NADH dehydrogenase subunit 6 [Grus carunculatus] Length = 173 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFVY 69 >gi|327555479|gb|AEB01094.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] Length = 175 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 40/71 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G ++ Sbjct: 5 FFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD 78 V F F + D Sbjct: 65 VVFAFCVGFTD 75 >gi|304322921|ref|YP_003856759.1| NADH dehydrogenase subunit 6 [Sturnus sericeus] gi|302377864|gb|ADL32016.1| NADH dehydrogenase subunit 6 [Sturnus sericeus] Length = 172 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 V + +P Y V L+ A V G + LG FV ++ ++VY+G ++V F++ Sbjct: 19 VASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVGLVLVMVYLGGMLVVFVY 69 >gi|218157314|ref|YP_002364467.1| NADH dehydrogenase subunit 6 [Geococcyx californianus] gi|166093109|gb|ABY82541.1| NADH dehydrogenase subunit 6 [Geococcyx californianus] Length = 173 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEP 86 + AEP Sbjct: 73 L------AAEP 77 >gi|257077084|ref|ZP_05571445.1| hypothetical protein Faci_08471 [Ferroplasma acidarmanus fer1] Length = 83 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 46/74 (62%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + ++ F++ + +A+I + ++ +N I+S L+ + + +F+ LG FV I L+VY Sbjct: 2 IDTIIFFILAAIAVIMALSAISTKNLIHSSIFLLILLLMFSIIFIFLGLSFVGSIELLVY 61 Query: 63 VGAVIVFFLFIIMM 76 GAV++ +F++M+ Sbjct: 62 AGAVVMLIVFVLML 75 >gi|1304732|gb|AAA99090.1| NADH dehydrogenase subunit 6 [Grus rubicunda] Length = 173 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|90576908|gb|ABD95503.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] Length = 172 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|1304712|gb|AAA99078.1| NADH dehydrogenase subunit 6 [Grus antigone gillae] Length = 173 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|5081435|gb|AAD39380.1|AF123900_1 NADH dehydrogenase subunit 6 [Grus leucogeranus] gi|224504064|gb|ACN53643.1| NADH dehydrogenase subunit 6 [Grus leucogeranus] Length = 173 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+ Sbjct: 1 MTYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF-IIMMLDIDIEVAEPRKKRGF 92 G ++V F++ + + D E R G+ Sbjct: 61 GGMLVVFVYSVSLAADPYPEAWGDRPVVGY 90 >gi|1171851|sp|P43207|NU6M_URIAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|262835|gb|AAB24770.1| NADH dehydrogenase subunit 6 [Uria aalge] gi|394690|emb|CAA52118.1| NADH dehydrogenase subunit 6 [Uria aalge] gi|21104310|emb|CAC80353.1| NADH dehydrogenase subunit 6 [Uria aalge] Length = 172 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69 >gi|238908466|ref|YP_002929450.1| NADH dehydrogenase subunit 6 [Platalea leucorodia] gi|238626030|gb|ACR48312.1| NADH dehydrogenase subunit 6 [Platalea leucorodia] Length = 173 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVA 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSF 96 + D+ E + G+ F Sbjct: 73 LAADLFPETWGDWRVMGYGAGF 94 >gi|37596515|gb|AAQ95018.1| NADH dehydrogenase subunit 6 [Cryptospiza shelleyi] Length = 159 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596469|gb|AAQ94995.1| NADH dehydrogenase subunit 6 [Estrilda erythronotos] Length = 159 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|5081451|gb|AAD39388.1|AF123908_1 NADH dehydrogenase subunit 6 [Grus americana] gi|224504092|gb|ACN53669.1| NADH dehydrogenase subunit 6 [Grus americana] Length = 173 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|313768472|ref|YP_004062151.1| NADH dehydrogenase subunit 6 [Cuora amboinensis] gi|225194544|gb|ACN81799.1| NADH dehydrogenase subunit 6 [Cuora amboinensis] Length = 174 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 30/46 (65%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V SLIF ++ G+ + +G FV+++ ++Y+G ++V F + Sbjct: 24 SPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGMLVIFAY 69 >gi|37596439|gb|AAQ94980.1| NADH dehydrogenase subunit 6 [Pytilia melba percivali] Length = 159 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596501|gb|AAQ95011.1| NADH dehydrogenase subunit 6 [Spermophaga haematina haematina] Length = 159 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|730211|sp|P41322|NU6M_LARCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394678|emb|CAA52137.1| NADH dehydrogenase subunit 6 [Larus canus] Length = 173 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|302201575|gb|ADL09134.1| NADH dehydrogenase subunit 6 [Aceros corrugatus] Length = 173 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 7 FFYLFSFMA-IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +F LF +A ++ V + +P Y V L+ V G L LG F+A++ +VY+G Sbjct: 3 YFVLFFGLAFVLGGLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGVSFIALVLFMVYLGG 62 Query: 66 VIVFFLF 72 ++V F++ Sbjct: 63 MLVVFVY 69 >gi|54112097|ref|YP_122154.1| NADH dehydrogenase subunit 6 [Zaglossus bruijni] gi|54019669|emb|CAG26340.1| NADH dehydrogenase subunit 6 [Zaglossus bruijni] Length = 166 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F YL S + ++S + +PIY SL+ + G+ + LG F+ +I +VY+G + Sbjct: 4 FIYLLSIVLVLSFMAFASKPSPIYGGLSLVLSGGVGCGIIVSLGGSFLGLIVFLVYLGGM 63 Query: 67 IVFF 70 +V F Sbjct: 64 LVVF 67 >gi|5835735|ref|NP_008548.1|ND6_15050 NADH dehydrogenase subunit 6 [Corvus frugilegus] gi|4454087|emb|CAA77207.1| NADH dehydrogenase subunit 6 [Corvus frugilegus] Length = 173 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A + G L +G FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVASIAGCGWLLSMGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|5081453|gb|AAD39389.1|AF123909_1 NADH dehydrogenase subunit 6 [Grus nigricollis] gi|224504134|gb|ACN53708.1| NADH dehydrogenase subunit 6 [Grus nigricollis] Length = 173 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|322422520|ref|YP_004222096.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|322422521|ref|YP_004222097.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525925|gb|ADW41494.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525926|gb|ADW41495.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525944|gb|ADW41507.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525947|gb|ADW41509.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525950|gb|ADW41511.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525953|gb|ADW41513.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525956|gb|ADW41515.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525968|gb|ADW41521.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525970|gb|ADW41522.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525972|gb|ADW41523.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525974|gb|ADW41524.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525976|gb|ADW41525.1| NADH dehydrogenase subunit 6 [Penelopides panini] Length = 173 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 6 LFFYLFSFMA-IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++F LF +A ++ V + +P Y V L+ A V G L LG F+A+ +VY+G Sbjct: 2 IYFVLFLGLAFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFIALALFMVYLG 61 Query: 65 AVIVFFLF 72 ++V F++ Sbjct: 62 GMLVVFVY 69 >gi|37596455|gb|AAQ94988.1| NADH dehydrogenase subunit 6 [Euschistospiza dybowskii] Length = 159 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|299140921|ref|ZP_07034059.1| NADH dehydrogenase I, subunit 6 [Prevotella oris C735] gi|298577887|gb|EFI49755.1| NADH dehydrogenase I, subunit 6 [Prevotella oris C735] Length = 168 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 25/178 (14%) Query: 10 LFSFMAII---SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +F +A++ S+ + V + + S L+F AG++ LL F+ + VY G + Sbjct: 1 MFCILAVVILGSAIMCVLTKRIMRSATFLLFVLFGVAGIYFLLDYTFLGAAQISVYAGGI 60 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSF------------FIGILAAELIVCASNFMV 114 + ++F I++ R +G + F +G++ L++ +NF Sbjct: 61 TMMYIF-------AIQLVSKRTLQGLVERFKVSRVVNGILLSTVGLVTVGLVLIKNNFYN 113 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + + + + +G Y QY P E LL +IG I M+ + D K Sbjct: 114 AAMQATDTEVPMEQIGTALLGSDKY-QYVLPFEFISLFLLACIIGGI--MIARKEDNK 168 >gi|37596451|gb|AAQ94986.1| NADH dehydrogenase subunit 6 [Pytilia afra] Length = 159 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 24/138 (17%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 ILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------R 123 + A+P + G +G F +G++ + A F V + G + R Sbjct: 73 L------AADPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLADGGTVDSGGLLSVR 126 Query: 124 LVFKGNNVENIGKVLYTQ 141 L F G VLY+Q Sbjct: 127 LDFGGA------AVLYSQ 138 >gi|16797942|gb|AAL29223.1| NADH dehydrogenase subunit 6 [Numenius phaeopus] Length = 173 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69 >gi|301058805|ref|ZP_07199791.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [delta proteobacterium NaphS2] gi|300447090|gb|EFK10869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [delta proteobacterium NaphS2] Length = 169 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + + V ++ + ++ LI + AG++LLL A F+A + +++YVG V V F IM+ Sbjct: 20 AVMAVMSKSLVRALVGLIAVMIALAGMYLLLAAPFIAFMQILIYVGGVSVLIFFAIMLSK 79 Query: 79 IDIEVAE 85 E E Sbjct: 80 ASAEGDE 86 >gi|37596471|gb|AAQ94996.1| NADH dehydrogenase subunit 6 [Estrilda quartinia kilimensis] gi|37596473|gb|AAQ94997.1| NADH dehydrogenase subunit 6 [Estrilda melanotis] Length = 159 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596545|gb|AAQ95033.1| NADH dehydrogenase subunit 6 [Emblema pictum] Length = 159 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|5081429|gb|AAD39377.1|AF123897_1 NADH dehydrogenase subunit 6 [Grus virgo] gi|224504050|gb|ACN53630.1| NADH dehydrogenase subunit 6 [Grus virgo] Length = 173 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|11643403|gb|AAG39562.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 -RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG---------- 135 + G G G +IV + G LV G V N+G Sbjct: 78 YPEAWGDWGVVEYGFGMGMVIVVGA-----VVSGVFEVLV-DGGTVNNVGVSFIRLDFGG 131 Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 VLY+ A I G+ LLL++ ++L R + R I Sbjct: 132 AAVLYSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169 >gi|21104306|emb|CAC80350.1| NADH dehydrogenase subunit 6 [Pinguinus impennis] Length = 173 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|19481552|gb|AAL88848.1|AF407115_1 NADH dehydrogenase subunit 6 [Lagonosticta sanguinodorsalis] gi|37596425|gb|AAQ94973.1| NADH dehydrogenase subunit 6 [Lagonosticta rhodopareia jamesoni] Length = 159 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596551|gb|AAQ95036.1| NADH dehydrogenase subunit 6 [Lonchura fringilloides] Length = 159 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|37596443|gb|AAQ94982.1| NADH dehydrogenase subunit 6 [Pytilia melba citerior] Length = 159 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|1304730|gb|AAA99089.1| NADH dehydrogenase subunit 6 [Grus rubicunda] gi|224504162|gb|ACN53734.1| NADH dehydrogenase subunit 6 [Grus rubicunda] Length = 173 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|37596541|gb|AAQ95031.1| NADH dehydrogenase subunit 6 [Poephila cincta] Length = 159 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|19481564|gb|AAL88854.1|AF407121_1 NADH dehydrogenase subunit 6 [Bubalornis albirostris] Length = 159 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + A+P + Sbjct: 73 L------AADPYPE 80 >gi|19481574|gb|AAL88859.1|AF407126_1 NADH dehydrogenase subunit 6 [Motacilla alba] Length = 159 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|256427272|ref|YP_003127037.1| Nad6p [Brettanomyces custersianus] gi|255761583|gb|ACU32820.1| Nad6p [Brettanomyces custersianus] Length = 168 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 19/130 (14%) Query: 50 GAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++ A++ ++YVGAV++ F+FI+ +L+ KK + + +L ++ Sbjct: 45 SSQLFAILYTLIYVGAVVILFVFILSVLN---------KKEEYEYQYSSLLLILIILFLD 95 Query: 110 SNFMVFSAEGELSRL-VFKGNNVENI---------GKVLYTQYAYPLEISGFILLLSMIG 159 S + L+ + +F N+ NI G +L+T+Y++ L I LLLS+IG Sbjct: 96 DLDYNDSGDYNLNNVNIFDNFNLLNITNNSDLATIGNLLFTEYSFLLVIIAVTLLLSIIG 155 Query: 160 AIVLMLRHRR 169 IV++ R++ Sbjct: 156 IIVIVKRNKS 165 >gi|37596531|gb|AAQ95026.1| NADH dehydrogenase subunit 6 [Erythrura trichroa] Length = 159 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596503|gb|AAQ95012.1| NADH dehydrogenase subunit 6 [Pyrenestes ostrinus] Length = 159 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596535|gb|AAQ95028.1| NADH dehydrogenase subunit 6 [Neochmia ruficauda] Length = 159 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|322422702|ref|YP_004222414.1| NADH dehydrogenase subunit 6 [Mauremys megalocephala] gi|296040860|gb|ADG85403.1| NADH dehydrogenase subunit 6 [Mauremys megalocephala] Length = 174 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF + G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALFGCGVLVGMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFF 70 +V F Sbjct: 64 LVIF 67 >gi|299889170|dbj|BAJ10291.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889171|dbj|BAJ10292.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889174|dbj|BAJ10294.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889175|dbj|BAJ10295.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889178|dbj|BAJ10297.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889179|dbj|BAJ10298.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889182|dbj|BAJ10300.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889183|dbj|BAJ10301.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] Length = 175 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|37596537|gb|AAQ95029.1| NADH dehydrogenase subunit 6 [Neochmia phaeton phaeton] Length = 159 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|1304706|gb|AAA99074.1| NADH dehydrogenase subunit 6 [Grus antigone gillae] gi|1304720|gb|AAA99083.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei] gi|1304725|gb|AAA99086.1| NADH dehydrogenase subunit 6 [Grus antigone antigone] gi|1304728|gb|AAA99088.1| NADH dehydrogenase subunit 6 [Grus antigone antigone] gi|224504176|gb|ACN53747.1| NADH dehydrogenase subunit 6 [Grus antigone] Length = 173 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|190349481|ref|YP_001974552.1| NADH dehydrogenase subunit 6 [Platalea minor] gi|134268955|gb|ABO68978.1| NADH dehydrogenase subunit 6 [Platalea minor] gi|283131464|dbj|BAI63462.1| NADH dehydrogenase subunit 6 [Platalea minor] gi|283131465|dbj|BAI63463.1| NADH dehydrogenase subunit 6 [Platalea minor] gi|283131468|dbj|BAI63465.1| NADH dehydrogenase subunit 6 [Platalea minor] gi|283131469|dbj|BAI63466.1| NADH dehydrogenase subunit 6 [Platalea minor] Length = 173 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVA 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSF 96 + D+ E + G+ F Sbjct: 73 LAADLFPEAWGDWRVMGYGAGF 94 >gi|37596433|gb|AAQ94977.1| NADH dehydrogenase subunit 6 [Lagonosticta rufopicta] Length = 159 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|159524383|ref|YP_001542766.1| NADH dehydrogenase subunit 6 [Helarctos malayanus] gi|121592342|gb|ABM63276.1| NADH dehydrogenase subunit 6 [Helarctos malayanus] gi|195182447|emb|CAQ68493.1| NADH dehydrogenase subunit 6 [Helarctos malayanus] Length = 175 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 27/161 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M Sbjct: 25 SPIYGGLVLIISGGAGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV--------------- 131 K LG+F +G+L+ LI C + + + +VFK N V Sbjct: 85 SNKA-VLGAFIVGLLSELLIAC------YVLKDDEVEVVFKFNGVGDWVIYDTGDSGFFS 137 Query: 132 -ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 E +G LY+ + + ++G+ LL IG +V+M R + Sbjct: 138 EEAMGIAALYSYGTWLVIVTGWSLL---IGVLVIMEVTRGN 175 >gi|37596523|gb|AAQ95022.1| NADH dehydrogenase subunit 6 [Amadina fasciata] Length = 159 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 20/138 (14%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F F F ++ V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLFLGFCF--VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR----GFLG-SFFIGILAAELIVCASNFMVFSA 117 +G ++V F++ + + A+P + G +G SF IG++ V F V Sbjct: 60 LGGMLVVFVYSVSL------AADPYPESWVDWGVVGYSFGIGLVVMIGFVVGGVFEVLVD 113 Query: 118 EGELS-------RLVFKG 128 EG +S RL F G Sbjct: 114 EGVVSGGGLLSTRLDFSG 131 >gi|304365557|gb|ADM26363.1| NADH dehydrogenase subunit 6 [Geococcyx californianus] Length = 173 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEP 86 + AEP Sbjct: 73 L------AAEP 77 >gi|299889186|dbj|BAJ10303.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] gi|299889187|dbj|BAJ10304.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] gi|299889190|dbj|BAJ10306.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] gi|299889191|dbj|BAJ10307.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] gi|299889194|dbj|BAJ10309.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] gi|299889195|dbj|BAJ10310.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] Length = 175 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|37596509|gb|AAQ95015.1| NADH dehydrogenase subunit 6 [Estrilda caerulescens] Length = 159 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|108793419|ref|YP_637009.1| NADH dehydrogenase subunit 6 [Nipponia nippon] gi|84579397|dbj|BAE72088.1| NADH dehydrogenase subunit 6 [Nipponia nippon] Length = 173 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 I+ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 ILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|302201534|gb|ADL09096.1| NADH dehydrogenase subunit 6 [Turtur tympanistria] Length = 173 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 24 SPYYGVVGLVVASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|153124377|ref|YP_001382106.1| NADH dehydrogenase subunit 6 [Martes melampus] gi|152962759|dbj|BAF73994.1| NADH dehydrogenase subunit 6 [Martes melampus] gi|295641171|gb|ADG22714.1| NADH dehydrogenase subunit 6 [Martes americana] Length = 177 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 K LG+F +G+L+ L C + KG++VE Sbjct: 85 SNKA--VLGAFIVGLLSELLTAC---------------YILKGDDVE 114 >gi|37596417|gb|AAQ94969.1| NADH dehydrogenase subunit 6 [Lagonosticta rara] Length = 159 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596421|gb|AAQ94971.1| NADH dehydrogenase subunit 6 [Lagonosticta rubricata congica] Length = 159 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|9230597|gb|AAF85924.1|AF171658_2 NADH dehydrogenase subunit 6 [Loxia curvirostra minor] gi|9230609|gb|AAF85932.1|AF171662_2 NADH dehydrogenase subunit 6 [Loxia curvirostra pusilla] gi|9230612|gb|AAF85934.1|AF171663_2 NADH dehydrogenase subunit 6 [Loxia curvirostra stricklandi] Length = 172 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 29/46 (63%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|299889198|dbj|BAJ10312.1| NADH dehydrogenase subunit 6 [Phoebastria nigripes] gi|299889199|dbj|BAJ10313.1| NADH dehydrogenase subunit 6 [Phoebastria nigripes] Length = 175 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|37596561|gb|AAQ95041.1| NADH dehydrogenase subunit 6 [Lonchura cantans] Length = 159 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|21228586|ref|NP_634508.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] gi|20907080|gb|AAM32180.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] Length = 83 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 36/67 (53%) Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 +F + +L ++V + ++ EL +N+E IG +++T + P E+ +LL Sbjct: 8 AFLVCLLFVAVVVTGAFGTSWNTVSELPENPADPSNIEGIGMLIFTHFVAPFEVLSIVLL 67 Query: 155 LSMIGAI 161 S+IGAI Sbjct: 68 ASLIGAI 74 >gi|115494661|ref|YP_778771.1| NADH dehydrogenase subunit 6 [Monachus schauinslandi] gi|115344911|emb|CAJ56960.1| NADH dehydrogenase subunit 6 [Monachus schauinslandi] Length = 175 Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M Sbjct: 25 SPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWI 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ L+VC Sbjct: 85 SNKA-VLGAFIMGLLSELLLVC 105 >gi|94490653|ref|YP_588184.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus] gi|90990881|dbj|BAE92874.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus] Length = 173 Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F + ++ V + +P Y V L+ A V G + LG FV+++ +VY+ Sbjct: 1 MTYFMFFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGMSFVSLVLFMVYL 60 Query: 64 GAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 G ++V F++ + + D E + G+ G FI +LAA +V Sbjct: 61 GGMLVVFVYSVSLAADPFPEAWGDWRVVGY-GVSFIVVLAAGAVV 104 >gi|37596453|gb|AAQ94987.1| NADH dehydrogenase subunit 6 [Hypargos margaritatus] Length = 159 Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|1171841|sp|P43198|NU6M_CEPGR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394668|emb|CAA52122.1| NADH dehydrogenase subunit 6 [Cepphus grylle] gi|21104318|emb|CAC80341.1| NADH dehydrogenase subunit 6 [Cepphus grylle] Length = 173 Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|37596521|gb|AAQ95021.1| NADH dehydrogenase subunit 6 [Nesocharis shelleyi] Length = 159 Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|11643245|gb|AAG39483.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] Length = 172 Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKK 89 + A+P + Sbjct: 73 L------AADPYPE 80 >gi|310007457|gb|ADP00770.1| NADH dehydrogenase subunit 6 [Morone americana] Length = 172 Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ + F+L F ++S V +P Y F L+ + + G FVA+I ++ Sbjct: 1 MITYAACFFLVGF--VLSMVAVACNPSPFYGSFGLVAVAGFGCAVVIGFGGVFVALILVM 58 Query: 61 VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103 +YVGA++V F++ + D E G G +F+G++AA Sbjct: 59 IYVGAMLVVFVYSAALAADRYPESWGSGSVAGQAGGYFLGLMAA 102 >gi|19481554|gb|AAL88849.1|AF407116_1 NADH dehydrogenase subunit 6 [Erythrura gouldiae] Length = 159 Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596511|gb|AAQ95016.1| NADH dehydrogenase subunit 6 [Estrilda perreini perreini] Length = 159 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V LI A V G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVMGLIVAAVAGCGWLVSLGLSFVSLVLVMVYLGGMLVVFVYSVSL----- 73 Query: 82 EVAEPRKKR 90 A+P + Sbjct: 74 -AADPYPES 81 >gi|5835973|ref|NP_008737.1|ND6_15093 NADH dehydrogenase subunit 6 [Smithornis sharpei] gi|3600011|gb|AAC35514.1| NADH dehydrogenase subunit VI [Smithornis sharpei] Length = 173 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F L ++ V + +P Y V L+ A V G + LG FV+++ +VY+G + Sbjct: 4 FLLLLGMCFVLGGLAVASNPSPYYGVVGLVMASVVGCGWLMSLGLSFVSLVLFLVYLGGM 63 Query: 67 IVFFLF 72 +V F++ Sbjct: 64 LVVFVY 69 >gi|108802840|ref|YP_637138.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] gi|81295109|emb|CAH18602.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] Length = 175 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 40/71 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G ++ Sbjct: 5 FFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD 78 V F F + D Sbjct: 65 VVFAFCVGFTD 75 >gi|327555507|gb|AEB01120.1| NADH dehydrogenase subunit 6 [Crocodylus rhombifer] Length = 175 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 40/71 (56%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F+L + ++S LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G ++ Sbjct: 5 FFLLCCLMMVSVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGGLL 64 Query: 68 VFFLFIIMMLD 78 V F F + D Sbjct: 65 VVFAFCVGFTD 75 >gi|325126745|ref|YP_004285891.1| NADH dehydrogenase subunit 6 [Carduelis sinica] gi|324022961|gb|ADY15527.1| NADH dehydrogenase subunit 6 [Carduelis sinica] Length = 172 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 29/46 (63%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|29569578|gb|AAO85257.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis] gi|76009046|gb|ABA38985.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis] gi|76009052|gb|ABA38988.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis] gi|281308292|gb|ADA58294.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis] Length = 172 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVMGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|19481584|gb|AAL88864.1|AF407131_1 NADH dehydrogenase subunit 6 [Fringilla coelebs] Length = 159 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Query: 13 FMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 FM + + V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V Sbjct: 7 FMGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKR 90 F++ + + A+P + Sbjct: 67 FVYSVSL------AADPYPES 81 >gi|9230588|gb|AAF85918.1|AF171655_2 NADH dehydrogenase subunit 6 [Loxia leucoptera leucoptera] gi|9230606|gb|AAF85930.1|AF171661_2 NADH dehydrogenase subunit 6 [Loxia leucoptera bifasciata] Length = 172 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 29/46 (63%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|16797927|gb|AAL29216.1| NADH dehydrogenase subunit 6 [Numenius madagascariensis] Length = 173 Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|37596423|gb|AAQ94972.1| NADH dehydrogenase subunit 6 [Lagonosticta rubricata rubricata] Length = 159 Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596513|gb|AAQ95017.1| NADH dehydrogenase subunit 6 [Mandingoa nitidula nitidula] Length = 159 Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|89255434|ref|YP_514603.1| NADH dehydrogenase subunit 6 [Menura novaehollandiae] gi|42494924|gb|AAS17746.1| NADH dehydrogenase subunit 6 [Menura novaehollandiae] Length = 172 Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVVGLVLASVVGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 RKK 89 K Sbjct: 78 FPK 80 >gi|295641157|gb|ADG22701.1| NADH dehydrogenase subunit 6 [Martes zibellina] Length = 177 Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 K LG+F +G+L+ L C + KG++VE Sbjct: 85 SNKA--VLGAFIVGLLSELLTAC---------------YILKGDDVE 114 >gi|108793363|ref|YP_637087.1| NADH dehydrogenase subunit 6 [Eudyptes chrysocome] gi|108755468|dbj|BAE95704.1| NADH dehydrogenase subunit 6 [Eudyptes chrysocome] Length = 172 Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G + LG FVA++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVALVLFMVYLGGMLVVFVY 69 >gi|37596427|gb|AAQ94974.1| NADH dehydrogenase subunit 6 [Lagonosticta virata] Length = 159 Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596517|gb|AAQ95019.1| NADH dehydrogenase subunit 6 [Nigrita bicolor] Length = 159 Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|19481548|gb|AAL88846.1|AF407113_1 NADH dehydrogenase subunit 6 [Ortygospiza atricollis] Length = 159 Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|109676684|gb|ABG37771.1| NADH dehydrogenase subunit 6 [Pelecanus conspicillatus] Length = 173 Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ S V + +P Y V L+ A V G + LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGSLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|16797929|gb|AAL29217.1| NADH dehydrogenase subunit 6 [Recurvirostra avosetta] Length = 173 Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69 >gi|1171834|sp|P43192|NU6M_ALLAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394652|emb|CAA52120.1| NADH dehydrogenase subunit 6 [Alle alle] gi|21103999|emb|CAC80347.1| NADH dehydrogenase subunit 6 [Alle alle] Length = 173 Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A + G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASIAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|37596563|gb|AAQ95042.1| NADH dehydrogenase subunit 6 [Lonchura malabarica] Length = 159 Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596539|gb|AAQ95030.1| NADH dehydrogenase subunit 6 [Stagonopleura guttata] Length = 159 Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|20330601|ref|NP_620339.1| NADH dehydrogenase subunit 6 [Haematopus ater] gi|20270025|gb|AAL74044.1| NADH dehydrogenase subunit 6 [Haematopus ater] Length = 173 Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69 >gi|124056424|ref|YP_001019022.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys] gi|124012083|gb|ABM87948.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys] Length = 175 Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|77020034|ref|YP_337792.1| NADH dehydrogenase subunit 6 [Saccoglossus kowalevskii] gi|50511957|gb|AAQ92988.1| NADH dehydrogenase subunit 6 [Saccoglossus kowalevskii] Length = 159 Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-IIMMLDIDIEVA 84 R+P +S L+ A +G+ +L GA FV +I ++Y+G ++V F + + DI EV Sbjct: 20 RSPYFSALGLVLATCGLSGVLMLGGAVFVGLILFLMYLGGMLVVFAYSAALAADIYPEVG 79 Query: 85 EPRK 88 + Sbjct: 80 AGKG 83 >gi|16797946|gb|AAL29225.1| NADH dehydrogenase subunit 6 [Charadrius alexandrinus] Length = 173 Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG F++++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFISLVLFMVYLGGMLVVFVY 69 >gi|37596533|gb|AAQ95027.1| NADH dehydrogenase subunit 6 [Neochmia temporalis] Length = 159 Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|9230603|gb|AAF85928.1|AF171660_2 NADH dehydrogenase subunit 6 [Loxia leucoptera megaplaga] Length = 172 Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 29/46 (63%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|5081427|gb|AAD39376.1|AF123896_1 NADH dehydrogenase subunit 6 [Balearica regulorum] Length = 173 Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSF 96 + D E + G+ F Sbjct: 73 LAADPYPEAWGDWRVMGYTAGF 94 >gi|195661126|ref|YP_002117878.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|195182371|emb|CAQ68428.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097235|emb|CAY39899.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097263|emb|CAY39952.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097277|emb|CAY39978.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097291|emb|CAY40005.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097431|emb|CAY40268.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097445|emb|CAY40295.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097459|emb|CAY40324.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097473|emb|CAY40350.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097487|emb|CAY40376.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097501|emb|CAY40402.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097515|emb|CAY40429.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097613|emb|CAY40614.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] Length = 175 Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ +VY+G ++V F + M Sbjct: 25 SPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ LI C Sbjct: 85 SNKA-VLGAFIVGLLSELLIAC 105 >gi|37596437|gb|AAQ94979.1| NADH dehydrogenase subunit 6 [Clytospiza monteiri] Length = 159 Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596543|gb|AAQ95032.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] Length = 159 Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596435|gb|AAQ94978.1| NADH dehydrogenase subunit 6 [Lagonosticta nitidula] Length = 159 Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|1171848|sp|P43204|NU6M_SYNAN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394684|emb|CAA52125.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus] Length = 173 Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G + LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGMSFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 + D E + G+ G FI +LAA +V Sbjct: 73 LAADPFPEAWGDWRVVGY-GVSFIVVLAAGAVV 104 >gi|157488875|gb|ABV57841.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGAVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|5081431|gb|AAD39378.1|AF123898_1 NADH dehydrogenase subunit 6 [Grus paradisea] gi|224504036|gb|ACN53617.1| NADH dehydrogenase subunit 6 [Grus paradisea] Length = 173 Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|224503994|gb|ACN53578.1| NADH dehydrogenase subunit 6 [Balearica regulorum] Length = 173 Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSF 96 + D E + G+ F Sbjct: 73 LAADPYPEAWGDWRVMGYTAGF 94 >gi|120944014|ref|YP_973113.1| NADH dehydrogenase subunit 6 [Ursus thibetanus mupinensis] gi|89112907|gb|ABD61071.1| NADH dehydrogenase subunit 6 [Ursus thibetanus mupinensis] Length = 175 Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M + P Sbjct: 25 SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAM----VTERYP 80 Query: 87 R---KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133 + LG+F +G+L+ LI C + + + +VFK N V + Sbjct: 81 EVWVSNKAVLGAFIVGLLSELLIAC------YVLKDDEVEIVFKFNGVGD 124 >gi|37596493|gb|AAQ95007.1| NADH dehydrogenase subunit 6 [Euschistospiza cinereovinacea cinereovinacea] Length = 159 Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 RKKR 90 + Sbjct: 78 YPES 81 >gi|14141890|ref|NP_115440.1| NADH dehydrogenase subunit 6 [Dromaius novaehollandiae] gi|14039565|gb|AAK53305.1|AF338711_13 NADH dehydrogenase subunit VI [Dromaius novaehollandiae] Length = 173 Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 35/69 (50%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F + I+ + V + +P Y V L+ V G L LG F++++ +VY+ Sbjct: 1 MTYFIFFLGLCFILGALAVASNPSPYYGVLGLVLGSVVGCGWLLSLGVSFISLVLFLVYL 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFVY 69 >gi|68989173|ref|YP_254622.1|ND6_18490 NADH dehydrogenase subunit 6 [Thalassarche melanophrys] gi|37724198|gb|AAO18360.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys] Length = 175 Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|325126773|ref|YP_004285917.1| NADH dehydrogenase subunit 6 [Carduelis spinus] gi|324022975|gb|ADY15540.1| NADH dehydrogenase subunit 6 [Carduelis spinus] Length = 172 Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 29/46 (63%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|84488802|ref|YP_448905.1| NADH dehydrogenase subunit 6 [Malacochersus tornieri] gi|67005731|gb|AAY62522.1| NADH dehydrogenase subunit 6 [Malacochersus tornieri] Length = 174 Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 +P Y VFSL+ V G+ +G F+++I +VY+G ++V F Sbjct: 24 SPYYGVFSLVLGSVFGCGMLAGMGGSFISLILFLVYLGGMLVIF 67 >gi|76801795|ref|YP_326803.1| NADH dehydrogenase subunit J [Natronomonas pharaonis DSM 2160] gi|76557660|emb|CAI49243.1| NADH dehydrogenase-like complex, subunit J1 [Natronomonas pharaonis DSM 2160] Length = 91 Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 38/63 (60%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 +S VV R+ +S L A + A +++L AEF+A+I ++VYVG V++ F +M++ Sbjct: 21 ASLGVVLARDVWHSALFLGAALFSVAVHYVMLRAEFLAVIQVLVYVGGVLILITFAVMLV 80 Query: 78 DID 80 D Sbjct: 81 RQD 83 >gi|256427298|ref|YP_003127062.1| NADH dehydrogenase subunit 6 [Threskiornis aethiopicus] gi|255709637|gb|ACU30726.1| NADH dehydrogenase subunit 6 [Threskiornis aethiopicus] Length = 173 Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-II 74 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVA 72 Query: 75 MMLDIDIEVAEPRKKRGF 92 + D+ E + G+ Sbjct: 73 LAADLFPETWGDWRVVGY 90 >gi|38707596|ref|NP_944735.1| NADH dehydrogenase subunit 6 [Pontoporia blainvillei] gi|38602555|emb|CAD88012.1| NADH6 protein [Pontoporia blainvillei] Length = 173 Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI G+ LG F+ ++ ++Y+G ++V F + M + A Sbjct: 25 SPIYGGVGLIVGGAMGCGIVFSLGGPFLGLMVFLIYLGGMLVVFGYTTAMATEEYPEAWI 84 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 K LGSF +G LA E +V V EGE + Sbjct: 85 SNKI-VLGSFVLG-LAVEFLVVG---YVLGVEGETAE 116 >gi|37596553|gb|AAQ95037.1| NADH dehydrogenase subunit 6 [Lonchura bicolor bicolor] Length = 159 Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|19481550|gb|AAL88847.1|AF407114_1 NADH dehydrogenase subunit 6 [Amandava subflava] Length = 159 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|59410765|gb|AAW84488.1| NADH dehydrogenase subunit 6 [Vidua wilsoni] Length = 159 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL----- 73 Query: 82 EVAEPRKKR 90 A+P K Sbjct: 74 -AADPYPKT 81 >gi|730208|sp|Q06059|NU6M_ANAPL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|13970|emb|CAA39143.1| ND6 [Anas platyrhynchos] gi|1945490|gb|AAB52615.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] Length = 81 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 +P Y V L+ A V G L LG FVA++ +VY G ++V F++ + + AE Sbjct: 23 PSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYFGGMLVVFVYSVAL------AAE 76 Query: 86 PRKKR 90 P + Sbjct: 77 PFPEA 81 >gi|37596507|gb|AAQ95014.1| NADH dehydrogenase subunit 6 [Estrilda atricapilla] Length = 159 Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 RKKR 90 + Sbjct: 78 YPES 81 >gi|218157286|ref|YP_002364441.1| NADH dehydrogenase subunit 6 [Eudynamys taitensis] gi|166093095|gb|ABY82528.1| NADH dehydrogenase subunit 6 [Eudynamys taitensis] Length = 173 Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|153124134|ref|YP_001382357.1| NADH dehydrogenase subunit 6 [Enhydra lutris] gi|152962773|dbj|BAF74007.1| NADH dehydrogenase subunit 6 [Enhydra lutris] Length = 177 Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84 Query: 86 PRKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ L C Sbjct: 85 SNKA--VLGAFIVGLLSELLTAC 105 >gi|19481532|gb|AAL88838.1|AF407105_1 NADH dehydrogenase subunit 6 [Anomalospiza imberbis imberbis] Length = 159 Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 4/144 (2%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVYLGGMLVVFVYSV- 71 Query: 76 MLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 L D E G +G F +G++ +V + F + S G +S + ++ Sbjct: 72 SLAAD-PYPEAWASWGVVGYGFGLGLVVMVGLVVSGVFGLLSNGGTVSGVGLLSVQLDLS 130 Query: 135 G-KVLYTQYAYPLEISGFILLLSM 157 G VLY++ A L I G+ LLL++ Sbjct: 131 GVSVLYSEGAGLLMIGGWGLLLTL 154 >gi|1304734|gb|AAA99091.1| NADH dehydrogenase subunit 6 [Grus vipio] gi|224504148|gb|ACN53721.1| NADH dehydrogenase subunit 6 [Grus vipio] Length = 173 Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Query: 9 YLFSFMA---IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 Y FM ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 3 YFMVFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGG 62 Query: 66 VIVFFLF 72 ++V F++ Sbjct: 63 MLVVFVY 69 >gi|295641227|gb|ADG22766.1| NADH dehydrogenase subunit 6 [Melogale moschata] Length = 177 Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 K LG+F +G+L+ L C + KG++VE Sbjct: 85 SNKA--VLGAFIVGLLSELLTAC---------------YILKGDDVE 114 >gi|37596565|gb|AAQ95043.1| NADH dehydrogenase subunit 6 [Lemuresthes nana] Length = 159 Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|67005591|gb|AAY62392.1| NADH dehydrogenase subunit 6 [Testudo hermanni] Length = 175 Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V +P Y VFSL+ G+ + +G FV++I ++Y+G ++V F + + Sbjct: 19 VSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYMGGMLVIFAYSCAL----- 73 Query: 82 EVAEPRKKR 90 AEP Sbjct: 74 -AAEPYPAS 81 >gi|28916747|ref|NP_803168.1| NADH dehydrogenase subunit 6 [Pisaster ochraceus] gi|28881692|emb|CAD70486.1| NADH dehydrogenase subunit 6 [Pisaster ochraceus] Length = 162 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 82/170 (48%), Gaps = 11/170 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +F+ F FM ++ S LV +P Y L+ ++ L L+G F+A++ L++YVG Sbjct: 2 IFYLTFIFM-LLGSTLVFYSLSPYYGALGLVIVSMSGCILCSLVGLSFMALVLLLIYVGG 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F++ + V + + + ++ + NF + E+ + Sbjct: 61 MLVVFVYSSALSAERYPVVSNVNEV-------LVLFLILVLWVSLNFDLLLNFSEVGWVT 113 Query: 126 FKGNNVENI-GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + NNV+ + G VLY+Q + L + G+IL + +I A+V+ ++ + Sbjct: 114 Y--NNVDLVGGGVLYSQVWWYLVVGGYILFVGLIVALVVTYGSEYNVLKA 161 >gi|295641101|gb|ADG22649.1| NADH dehydrogenase subunit 6 [Mustela nivalis] Length = 177 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIISGAIGCGIVLCFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 K LG+F +G+L+ L C + KG++VE Sbjct: 85 SNKAV--LGAFIVGLLSELLTAC---------------YILKGDDVE 114 >gi|37596549|gb|AAQ95035.1| NADH dehydrogenase subunit 6 [Aidemosyne modesta] Length = 159 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|19481580|gb|AAL88862.1|AF407129_1 NADH dehydrogenase subunit 6 [Carduelis pinus] Length = 159 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 RKKR 90 + Sbjct: 78 YPES 81 >gi|11643425|gb|AAG39573.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] Length = 172 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 20/158 (12%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + L D E Sbjct: 24 SPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSV-SLAAD-PYPEA 81 Query: 87 RKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELS-------RLVFKGNNVENIGKVL 138 G +G F +G++ V + F V G ++ RL F G V Sbjct: 82 WGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTVNNVGVSFIRLDFGGAAVP------ 135 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 Y+ A I G+ LLL++ ++L R + R I Sbjct: 136 YSWGAGLFLIGGWGLLLTLF----VVLELVRGLSRGAI 169 >gi|16797940|gb|AAL29222.1| NADH dehydrogenase subunit 6 [Numenius arquata] Length = 173 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69 >gi|19481578|gb|AAL88861.1|AF407128_1 NADH dehydrogenase subunit 6 [Passer domesticus] Length = 159 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F + + + Sbjct: 19 VASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFAYSVSL----- 73 Query: 82 EVAEPRKK 89 A+P + Sbjct: 74 -AADPYPE 80 >gi|84488631|ref|YP_448827.1| NADH dehydrogenase subunit 6 [Psammobates pardalis] gi|67005644|gb|AAY62441.1| NADH dehydrogenase subunit 6 [Psammobates pardalis] Length = 174 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SL+ G + +G F++++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMIGVSCSSSPYYGVLSLVLGAAFGCGALVGMGGSFISLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGI 100 +V F + + AEP G LG+F G+ Sbjct: 64 LVIFAYSSAL------AAEPYPGGWGGLGAFIYGL 92 >gi|57854578|ref|YP_187586.1| NADH dehydrogenase subunit 6 [Asterias amurensis] gi|57506705|dbj|BAD86694.1| NADH dehydrogenase subunit 6 [Asterias amurensis] Length = 162 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 10/168 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++ S LV +P Y L+ ++ L L+G F+A++ L++Y+G ++ Sbjct: 3 FYFTFILMLLGSTLVFYSLSPYYGALGLVIVAMSGCILCGLVGLSFMALVLLLIYIGGML 62 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F++ + V K+ L F I +L L NF + ELS + Sbjct: 63 VVFVYSSALSAERYPVVSNIKEVTIL--FLILVLWISL-----NFDLVLNLSELSWM--S 113 Query: 128 GNNVENIGK-VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 +N++ IG LY + L + G+IL +++I A+V+ ++ + Sbjct: 114 HSNLDLIGSGNLYNNVWWYLGVGGYILFIALIVALVITYGSEYNVLKA 161 >gi|195661267|ref|YP_002117930.1| NADH dehydrogenase subunit 6 [Arctodus simus] gi|195182401|emb|CAQ68454.1| NADH dehydrogenase subunit 6 [Arctodus simus] Length = 175 Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M Sbjct: 25 SPIYGGLVLIVSGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWI 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ L+VC Sbjct: 85 SNKA-VLGAFIVGLLSELLVVC 105 >gi|295641114|gb|ADG22661.1| NADH dehydrogenase subunit 6 [Mustela kathiah] Length = 177 Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 16/106 (15%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M Sbjct: 25 SPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 K LG+F +G+L+ L C + KG++VE Sbjct: 85 SNKA-VLGAFIVGLLSELLTAC---------------YILKGDDVE 114 >gi|84488760|ref|YP_448853.1| NADH dehydrogenase subunit 6 [Indotestudo forstenii] gi|67005675|gb|AAY62470.1| NADH dehydrogenase subunit 6 [Indotestudo forstenii] Length = 174 Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F LF F + V +P Y VFS++ G+ +++G FV+++ ++Y+G + Sbjct: 4 FMILFGFCFVFGMVGVSCSLSPYYGVFSMVLGAAFGCGMLVVMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFF 70 +V F Sbjct: 64 LVIF 67 >gi|224588030|ref|YP_002640560.1| NADH dehydrogenase subunit 6 [Martes flavigula] gi|223951391|gb|ACN29646.1| NADH dehydrogenase subunit 6 [Martes flavigula] gi|295641199|gb|ADG22740.1| NADH dehydrogenase subunit 6 [Martes flavigula] Length = 177 Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84 Query: 86 PRKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ L C Sbjct: 85 SNKA--VLGAFIVGLLSELLTAC 105 >gi|37596459|gb|AAQ94990.1| NADH dehydrogenase subunit 6 [Uraeginthus granatina] Length = 159 Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596429|gb|AAQ94975.1| NADH dehydrogenase subunit 6 [Lagonosticta senegala rendalli] Length = 159 Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 RKKR 90 + Sbjct: 78 YPES 81 >gi|76009022|gb|ABA38973.1| NADH dehydrogenase subunit 6 [Leucopternis plumbeus] Length = 172 Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVY 69 >gi|162145729|gb|ABX82902.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097305|emb|CAY40031.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097333|emb|CAY40083.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097347|emb|CAY40109.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097361|emb|CAY40136.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097375|emb|CAY40163.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097417|emb|CAY40242.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097557|emb|CAY40510.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097571|emb|CAY40536.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097585|emb|CAY40562.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097599|emb|CAY40588.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097655|emb|CAY40694.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] Length = 175 Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ +VY+G ++V F + M Sbjct: 25 SPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWI 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ LI C Sbjct: 85 SNKA-VLGAFIVGLLSELLIAC 105 >gi|9230579|gb|AAF85912.1|AF171652_2 NADH dehydrogenase subunit 6 [Loxia curvirostra himalayensis] Length = 172 Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 29/46 (63%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVY 69 >gi|9230591|gb|AAF85920.1|AF171656_2 NADH dehydrogenase subunit 6 [Loxia scotica] Length = 172 Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 29/46 (63%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVY 69 >gi|76009080|gb|ABA39002.1| NADH dehydrogenase subunit 6 [Leucopternis schistaceus] gi|281308368|gb|ADA58332.1| NADH dehydrogenase subunit 6 [Leucopternis schistaceus] Length = 172 Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|280978165|ref|YP_003345110.1| NADH dehydrogenase subunit 6 [Cyema atrum] gi|271280685|dbj|BAI53533.1| NADH dehydrogenase subunit 6 [Cyema atrum] Length = 175 Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 8/86 (9%) Query: 6 LFFYLFSFMAIISSFLVVTVR--NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +F+ + SF+ ++ +VV +P + V L+ A GL + G F+A++ ++VY+ Sbjct: 1 MFYMILSFLTVMLCGVVVVCSGPSPYFGVMGLVAASAGGCGLLIGYGGSFIAVVLILVYL 60 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKK 89 G ++V F + + AEP + Sbjct: 61 GGMLVVFAYSAAL------AAEPYPE 80 >gi|1171849|sp|P43205|NU6M_SYNHY RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394686|emb|CAA52126.1| NADH dehydrogenase subunit 6 [Synthliboramphus hypoleucus] Length = 173 Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 24 SPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|212725604|ref|YP_002317348.1| NADH dehydrogenase subunit 6 [Martes zibellina] gi|211997673|gb|ACJ14800.1| NADH dehydrogenase subunit 6 [Martes zibellina] Length = 177 Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 K LG+F +G+L+ L C + KG++VE Sbjct: 85 SNKA--VLGAFIVGLLSELLTAC---------------YILKGDDVE 114 >gi|37596505|gb|AAQ95013.1| NADH dehydrogenase subunit 6 [Estrilda nonnula] Length = 159 Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 RKKR 90 + Sbjct: 78 YPES 81 >gi|9230582|gb|AAF85914.1|AF171653_2 NADH dehydrogenase subunit 6 [Loxia curvirostra luzonensis] gi|9230594|gb|AAF85922.1|AF171657_2 NADH dehydrogenase subunit 6 [Loxia curvirostra curvirostra] gi|9230615|gb|AAF85936.1|AF171664_2 NADH dehydrogenase subunit 6 [Loxia pytyopsittacus] Length = 172 Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 29/46 (63%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVY 69 >gi|9230585|gb|AAF85916.1|AF171654_2 NADH dehydrogenase subunit 6 [Loxia curvirostra japonica] Length = 172 Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 29/46 (63%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ Sbjct: 24 SPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVY 69 >gi|76009038|gb|ABA38981.1| NADH dehydrogenase subunit 6 [Leucopternis lacernulatus] Length = 172 Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|37596547|gb|AAQ95034.1| NADH dehydrogenase subunit 6 [Taeniopygia bichenovii] Length = 159 Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|295641073|gb|ADG22623.1| NADH dehydrogenase subunit 6 [Mustela sibirica] gi|295641087|gb|ADG22636.1| NADH dehydrogenase subunit 6 [Mustela putorius] Length = 177 Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 16/106 (15%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M Sbjct: 25 SPIYGGLVLIISGAIGCGIVLCFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 K LG+F +G+L+ L C + KG++VE Sbjct: 85 SNKA-VLGAFIVGLLSELLTAC---------------YILKGDDVE 114 >gi|37596431|gb|AAQ94976.1| NADH dehydrogenase subunit 6 [Lagonosticta senegala rhodopsis] Length = 159 Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|19481534|gb|AAL88839.1|AF407106_1 NADH dehydrogenase subunit 6 [Anomalospiza imberbis butleri] Length = 159 Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 4/144 (2%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVYLGGMLVVFVYSV- 71 Query: 76 MLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 L D E G +G F +G++ +V + F + S G +S + ++ Sbjct: 72 SLAAD-PYPEAWASWGVVGYGFGLGLVVMVGLVVSGVFGLLSNGGTVSGVGLLSVQLDLS 130 Query: 135 G-KVLYTQYAYPLEISGFILLLSM 157 G VLY++ A L I G+ LLL++ Sbjct: 131 GVSVLYSEGAGLLMIGGWGLLLTL 154 >gi|11643337|gb|AAG39529.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|261864031|gb|ACY01517.1| NADH dehydrogenase subunit 6 [Apteryx australis mantelli] Length = 173 Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 27/46 (58%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ V G L LG FV+++ +VY+G ++V F++ Sbjct: 24 SPYYGVLGLVMGSVAGCGCLLSLGVSFVSLVLFLVYLGGMLVVFVY 69 >gi|281308328|gb|ADA58312.1| NADH dehydrogenase subunit 6 [Geranospiza caerulescens] Length = 172 Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|155624699|gb|ABU24736.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY F LI A G+ L G F+ ++ ++Y+G ++V F + M A Sbjct: 25 SPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWT 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K L F G+LA L C Sbjct: 85 SNKA-VLVMFITGVLAELLTAC 105 >gi|281308240|gb|ADA58268.1| NADH dehydrogenase subunit 6 [Buteogallus aequinoctialis] gi|281308242|gb|ADA58269.1| NADH dehydrogenase subunit 6 [Buteogallus aequinoctialis] Length = 172 Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|37596497|gb|AAQ95009.1| NADH dehydrogenase subunit 6 [Uraeginthus angolensis] Length = 159 Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|21306244|gb|AAM45928.1| NADH dehydrogenase subunit 6 [Chrysococcyx flavigularis] Length = 156 Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG F++++ +VY+G ++V F++ Sbjct: 12 VLGGLAVASNPSPYYGVVGLVLASVTGCGWLLSLGVSFMSLVLFMVYLGGMLVVFVY 68 >gi|281308340|gb|ADA58318.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus solitarius] Length = 172 Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|37596441|gb|AAQ94981.1| NADH dehydrogenase subunit 6 [Pytilia melba grotei] Length = 159 Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|5081425|gb|AAD39375.1|AF123895_1 NADH dehydrogenase subunit 6 [Balearica pavonina] Length = 173 Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69 >gi|331087471|gb|AEC53548.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus] Length = 173 Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|108773226|ref|YP_635801.1| NADH dehydrogenase subunit 6 [Chara vulgaris] gi|122177789|sp|Q1ACE6|NU6C_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|77157882|gb|ABA61923.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chara vulgaris] Length = 178 Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + YL I + V+ N +Y+ SL A L+L A+F+A+ ++ Sbjct: 6 MSYQLIVAYLIQLGIYIGALAVIFFNNIVYAAISLALVLSLIALLYLFFDADFLAVTQIL 65 Query: 61 VYVGAVIVFFLFIIMMLDI 79 +YVGA+ V LF IM++ + Sbjct: 66 IYVGAINVLILFAIMLISL 84 >gi|302201536|gb|ADL09097.1| NADH dehydrogenase subunit 6 [Crotophaga ani] Length = 173 Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + + AEP Sbjct: 24 SPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVSL------AAEP 77 >gi|37596519|gb|AAQ95020.1| NADH dehydrogenase subunit 6 [Parmoptila jamesoni] Length = 160 Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|37596463|gb|AAQ94992.1| NADH dehydrogenase subunit 6 [Estrilda troglodytes] gi|37596465|gb|AAQ94993.1| NADH dehydrogenase subunit 6 [Estrilda melpoda] gi|37596467|gb|AAQ94994.1| NADH dehydrogenase subunit 6 [Estrilda rhodopyga] Length = 159 Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 RKKR 90 + Sbjct: 78 YPES 81 >gi|301503285|gb|ADK76205.1| NADH dehydrogenase subunit 6 [Brotogeris cyanoptera] Length = 167 Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++++ LV + +P Y L F V G + LGA FVA+ +VY+G ++V F++ Sbjct: 13 VLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVY 69 >gi|76009040|gb|ABA38982.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus] gi|76009042|gb|ABA38983.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus] gi|281308334|gb|ADA58315.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus] Length = 172 Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|281308252|gb|ADA58274.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus] gi|281308254|gb|ADA58275.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus] gi|281308256|gb|ADA58276.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus] gi|281308320|gb|ADA58308.1| NADH dehydrogenase subunit 6 [Buteogallus subtilis] Length = 172 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|19481558|gb|AAL88851.1|AF407118_1 NADH dehydrogenase subunit 6 [Quelea quelea] Length = 159 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPEA 81 >gi|281308366|gb|ADA58331.1| NADH dehydrogenase subunit 6 [Leucopternis plumbeus] Length = 156 Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVY 69 >gi|37596461|gb|AAQ94991.1| NADH dehydrogenase subunit 6 [Estrilda paludicola] Length = 159 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73 Query: 82 EVAEPRKKR 90 A+P + Sbjct: 74 -AADPYPES 81 >gi|19343515|ref|NP_597979.1| NADH dehydrogenase subunit 6 [Ursus arctos] gi|19110571|gb|AAL85180.1|AF303110_13 NADH dehydrogenase subunit 6 [Ursus arctos] Length = 175 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M Sbjct: 25 SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ LI C Sbjct: 85 SNKA-VLGAFIVGLLSELLIAC 105 >gi|29569580|gb|AAO85258.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga urubitinga] gi|76009060|gb|ABA38992.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga] gi|281308326|gb|ADA58311.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga] Length = 172 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|326535894|ref|YP_004300341.1| NADH dehydrogenase subunit 6 [Emberiza chrysophrys] gi|325305644|gb|ADZ10809.1| NADH dehydrogenase subunit 6 [Emberiza chrysophrys] Length = 172 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ Sbjct: 19 VASNPSPYYGVLGLVVAAVAGCGWLVSLGVPFVSLVLVMVYLGGMLVVFVY 69 >gi|37596419|gb|AAQ94970.1| NADH dehydrogenase subunit 6 [Lagonosticta larvata nigricollis] Length = 159 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVIGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|242097389|emb|CAY40189.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097403|emb|CAY40216.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097627|emb|CAY40640.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] Length = 175 Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ +VY+G ++V F + M Sbjct: 25 SPIYGGLVLIVSGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWI 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ LI C Sbjct: 85 SNKA-VLGAFIVGLLSELLIAC 105 >gi|37596559|gb|AAQ95040.1| NADH dehydrogenase subunit 6 [Lonchura castaneothorax] Length = 158 Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73 Query: 82 EVAEPRKKR 90 A+P + Sbjct: 74 -AADPYPES 81 >gi|16797938|gb|AAL29221.1| NADH dehydrogenase subunit 6 [Limosa lapponica] Length = 173 Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G + LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|295641241|gb|ADG22779.1| NADH dehydrogenase subunit 6 [Arctonyx collaris] Length = 177 Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 18/107 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 K LG+F +G+L+ L+ C + KG++VE Sbjct: 85 SNKA--VLGAFIVGLLSELLMAC---------------YILKGDDVE 114 >gi|159524402|ref|YP_001542753.1| NADH dehydrogenase subunit 6 [Melursus ursinus] gi|121592314|gb|ABM63250.1| NADH dehydrogenase subunit 6 [Melursus ursinus] gi|195182417|emb|CAQ68467.1| NADH dehydrogenase subunit 6 [Melursus ursinus] Length = 175 Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ LI C Sbjct: 85 SNKAV--LGAFIVGLLSELLIAC 105 >gi|300087938|ref|YP_003758460.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527671|gb|ADJ26139.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 162 Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F++F+ I ++ VV RN + LI F AGLF+ L A+F+A I +++YVG+ Sbjct: 3 LAFFIFASGIIGTALAVVLFRNIFRASLMLILCFFLVAGLFVTLYADFLAAIQVLIYVGS 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + + + + +ML +I+ R + F G +++ S + +S L Sbjct: 63 ISI-LIILAIMLTREIQTGN-LSNRLRAPALFTGAGVTLVLILTS----VGTDWNVSTLK 116 Query: 126 FKGNNVENIGKVLYTQYAYPLEI--SGFILLLSMIGAIVLMLRHRRDIK 172 N + ++L++ ++ + + + +LL ++IGAI+L+ R D K Sbjct: 117 PAENTTALLAELLFSTDSFMMAVAMAAILLLTAIIGAIILV---RSDDK 162 >gi|19481544|gb|AAL88844.1|AF407111_1 NADH dehydrogenase subunit 6 [Estrilda astrild] Length = 159 Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPES 81 >gi|21306172|gb|AAM45892.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306174|gb|AAM45893.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306176|gb|AAM45894.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306178|gb|AAM45895.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306180|gb|AAM45896.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306182|gb|AAM45897.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306184|gb|AAM45898.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306186|gb|AAM45899.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306188|gb|AAM45900.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306190|gb|AAM45901.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306192|gb|AAM45902.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306194|gb|AAM45903.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306196|gb|AAM45904.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306198|gb|AAM45905.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306200|gb|AAM45906.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306202|gb|AAM45907.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306204|gb|AAM45908.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306206|gb|AAM45909.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306208|gb|AAM45910.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306210|gb|AAM45911.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306212|gb|AAM45912.1| NADH dehydrogenase subunit 6 [Chalcites basalis] Length = 156 Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 12 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 68 >gi|19481540|gb|AAL88842.1|AF407109_1 NADH dehydrogenase subunit 6 [Vidua macroura] Length = 159 Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73 Query: 82 EVAEPRKKR 90 A+P + Sbjct: 74 -AADPYPET 81 >gi|295641185|gb|ADG22727.1| NADH dehydrogenase subunit 6 [Martes foina] Length = 177 Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 K LG+F +G+L+ L C + KG++VE Sbjct: 85 SNKA--VLGAFIVGLLSELLTAC---------------YILKGDDVE 114 >gi|224504008|gb|ACN53591.1| NADH dehydrogenase subunit 6 [Balearica pavonina] Length = 173 Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVVFVY 69 >gi|108793377|ref|YP_637100.1| NADH dehydrogenase subunit 6 [Gavia pacifica] gi|108755482|dbj|BAE95717.1| NADH dehydrogenase subunit 6 [Gavia pacifica] Length = 173 Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 24 SPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 69 >gi|86742500|ref|YP_482900.1| cytochrome-c oxidase [Frankia sp. CcI3] gi|86569362|gb|ABD13171.1| Cytochrome-c oxidase [Frankia sp. CcI3] Length = 609 Score = 34.3 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 21/127 (16%) Query: 1 MVMQSLFFYL---------FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGA 51 ++ Q LF+Y F +IS L V R P++ L+FA + A L +++ A Sbjct: 259 LLWQHLFWYFGHPEVYIIALPFFGVISEILPVFSRKPLFGYKGLVFATIGIAALSVVVWA 318 Query: 52 E-----------FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIG 99 F A+++ ++ V I FF +I M + P GFL +F G Sbjct: 319 HHMFVTGAVLLPFFALMSFLIAVPTGIKFFNWIGTMWRGQLTFETPMLFAIGFLVTFLFG 378 Query: 100 ILAAELI 106 L L+ Sbjct: 379 GLTGVLL 385 >gi|19481542|gb|AAL88843.1|AF407110_1 NADH dehydrogenase subunit 6 [Hypargos niveoguttatus] Length = 159 Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + A+P Sbjct: 24 SPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL------AADP 77 Query: 87 RKKR 90 + Sbjct: 78 YPES 81 >gi|331087469|gb|AEC53547.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus] Length = 172 Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|21306216|gb|AAM45914.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] gi|21306218|gb|AAM45915.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] gi|21306220|gb|AAM45916.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] gi|21306222|gb|AAM45917.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] gi|21306224|gb|AAM45918.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] gi|21306226|gb|AAM45919.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] Length = 156 Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 12 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 68 >gi|331087464|gb|AEC53545.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus] gi|331087467|gb|AEC53546.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus] Length = 172 Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVY 69 >gi|288898457|gb|ADC66763.1| NADH dehydrogenase subunit 6 [Ursus arctos] Length = 175 Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M Sbjct: 25 SPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 K LG+F +G+L+ LI C Sbjct: 85 SNKA-VLGAFIVGLLSELLIAC 105 >gi|37596495|gb|AAQ95008.1| NADH dehydrogenase subunit 6 [Uraeginthus cyanocephalus] Length = 159 Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73 Query: 82 EVAEPRKKR 90 A+P + Sbjct: 74 -AADPYPES 81 >gi|37596499|gb|AAQ95010.1| NADH dehydrogenase subunit 6 [Uraeginthus bengalus] Length = 159 Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73 Query: 82 EVAEPRKKR 90 A+P + Sbjct: 74 -AADPYPES 81 >gi|19481568|gb|AAL88856.1|AF407123_1 NADH dehydrogenase subunit 6 [Amblyospiza albifrons] Length = 159 Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKR 90 + A+P + Sbjct: 73 L------AADPYPET 81 >gi|300115151|ref|YP_003761726.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Nitrosococcus watsonii C-113] gi|299541088|gb|ADJ29405.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus watsonii C-113] Length = 261 Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 49/74 (66%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+Q + F +F+F++I + + T + S L+ +F+ AGLF+LL A+ +A++ +++ Sbjct: 6 VLQWITFGIFAFISIAGALGMATTMSMFRSGIFLMASFIGVAGLFILLLADLLALLQIMM 65 Query: 62 YVGAVIVFFLFIIM 75 Y+G ++V LF+++ Sbjct: 66 YIGGMLVMILFMLL 79 >gi|295641255|gb|ADG22792.1| NADH dehydrogenase subunit 6 [Taxidea taxus] Length = 177 Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 17/157 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M Sbjct: 25 SPIYGGLVLIVSGAIGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWA 84 Query: 87 RKKRGFLGSFFIGILAAELIVC----ASNF---MVFSAEGELSRLVFKGNNV-----ENI 134 K L +F +G+L+ L VC NF +V G +++ + E + Sbjct: 85 SNKA-VLAAFIVGVLSELLTVCYILNEDNFEVDVVLKFNGAGDWVIYDTGDSGFFSEEAM 143 Query: 135 G-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G LY+ + + ++G+ LL IG +V+M R + Sbjct: 144 GIAALYSYGTWLVVVTGWSLL---IGVLVIMEVTRGN 177 >gi|37596479|gb|AAQ95000.1| NADH dehydrogenase subunit 6 [Vidua obtusa] Length = 159 Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73 Query: 82 EVAEPRKKR 90 A+P + Sbjct: 74 -AADPYPET 81 >gi|21306228|gb|AAM45920.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306230|gb|AAM45921.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306232|gb|AAM45922.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306234|gb|AAM45923.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306236|gb|AAM45924.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306238|gb|AAM45925.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306240|gb|AAM45926.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306242|gb|AAM45927.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] Length = 156 Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ Sbjct: 12 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVY 68 >gi|148292254|dbj|BAF62958.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|148292268|dbj|BAF62971.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|150372667|dbj|BAF66130.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] Length = 175 Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 17/156 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSRLVFKGNNV-----ENIG 135 K LG+F +G+L+ L+ C +VF G +V+ + E +G Sbjct: 85 SNKAV--LGAFIVGLLSELLLACYILKDDEADVVFGFNGMGDWVVYDTGDSGFFSEEAMG 142 Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 LY+ + + ++G+ LL +G +V+M R + Sbjct: 143 IAALYSYGTWLVVVTGWSLL---VGVLVIMEITRGN 175 >gi|148292240|dbj|BAF62945.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|150372639|dbj|BAF66104.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|150372653|dbj|BAF66117.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] Length = 175 Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 17/156 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI + G+ L G F+ ++ ++Y+G ++V F + M EV Sbjct: 25 SPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSRLVFKGNNV-----ENIG 135 K LG+F +G+L+ L+ C +VF G +V+ + E +G Sbjct: 85 SNKAV--LGAFIVGLLSELLLACYILKDDEADVVFGFNGMGDWVVYDTGDSGFFSEEAMG 142 Query: 136 -KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 LY+ + + ++G+ LL +G +V+M R + Sbjct: 143 IAALYSYGTWLVVVTGWSLL---VGVLVIMEITRGN 175 >gi|19481538|gb|AAL88841.1|AF407108_1 NADH dehydrogenase subunit 6 [Vidua paradisaea] Length = 159 Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL----- 73 Query: 82 EVAEPRKKR 90 A+P + Sbjct: 74 -AADPYPET 81 >gi|76009064|gb|ABA38994.1| NADH dehydrogenase subunit 6 [Geranospiza caerulescens] Length = 172 Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ V G + LG FVA++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVC 72 Query: 76 M 76 + Sbjct: 73 L 73 >gi|22711916|ref|NP_683855.1| NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum] gi|75272576|sp|Q8M9T8|NU6C_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|22416920|gb|AAM96520.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chaetosphaeridium globosum] Length = 179 Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 44/70 (62%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ F + + VV N IYS L F++ A L+LLLG+EF+++ +++YVGA+ V Sbjct: 11 FVLDFFIFVGALGVVFFNNIIYSALFLGLTFLSVALLYLLLGSEFLSVAQVIIYVGAINV 70 Query: 69 FFLFIIMMLD 78 +F IM+++ Sbjct: 71 LIVFAIMLVN 80 >gi|159793509|ref|YP_001542779.1| NADH dehydrogenase subunit 6 [Ursus thibetanus] gi|121592300|gb|ABM63237.1| NADH dehydrogenase subunit 6 [Ursus thibetanus] Length = 175 Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 29/162 (17%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAE 85 +PIY LI G+ L G F+ ++ +VY+G ++V F + M EV Sbjct: 25 SPIYGGLVLIINGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWV 84 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV-------------- 131 K LG+F +G+L+ LI C + + + +VFK N V Sbjct: 85 SNKAV--LGAFIVGLLSELLIAC------YVLKDDEVEIVFKFNGVGDWVIYDTGDSGFF 136 Query: 132 --ENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 E +G LY+ + + ++G+ LL IG +V+M R + Sbjct: 137 SEEAMGIAALYSYGTWLVIVTGWSLL---IGVLVIMEVTRGN 175 Searching..................................................done Results from round 2 >gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62] gi|254040539|gb|ACT57335.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 199/199 (100%), Positives = 199/199 (100%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV Sbjct: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE Sbjct: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL Sbjct: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 Query: 181 ESNPDNSIVMVKVKSGKGI 199 ESNPDNSIVMVKVKSGKGI Sbjct: 181 ESNPDNSIVMVKVKSGKGI 199 >gi|327188497|gb|EGE55711.1| NADH dehydrogenase subunit J [Rhizobium etli CNPAF512] Length = 251 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 99/204 (48%), Positives = 135/204 (66%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 48 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 107 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 108 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPEIA 167 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IKRQ+ Sbjct: 168 KTVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 227 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I +Q+ P ++ +V VK G+G+ Sbjct: 228 IPRQVARTPATAVEVVSVKPGQGV 251 >gi|218462498|ref|ZP_03502589.1| NADH dehydrogenase subunit J [Rhizobium etli Kim 5] Length = 230 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 99/204 (48%), Positives = 135/204 (66%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 27 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 86 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 87 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPEIA 146 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IKRQ+ Sbjct: 147 KSVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 206 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I +Q+ P ++ +V VK G+G+ Sbjct: 207 IPRQVARTPATAVEVVTVKPGQGV 230 >gi|296116525|ref|ZP_06835135.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter hansenii ATCC 23769] gi|295976737|gb|EFG83505.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter hansenii ATCC 23769] Length = 257 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 129/201 (64%), Gaps = 4/201 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+F+ + ++S+ +VV+ RNP++SV LI AF NAAGLFL+ GAEF+AMI ++VY Sbjct: 2 MTQIVFYIFAAVLVLSASMVVSARNPVHSVLFLILAFFNAAGLFLIAGAEFLAMILVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLDI I + E ++ G+ +L EL++ ++ V S G++ Sbjct: 62 VGAVAVLFLFVVMMLDIRIAQAREGLQRYAPFGAAIGAVLLGELVLAFMHWRVASNIGDV 121 Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + LV +N IG VLYT Y + + +LL++MIGAIVL LR R +RQDI + Sbjct: 122 AHLVPSTPTRSNTAAIGDVLYTHYIFLFQACALVLLVAMIGAIVLTLRDRPTGRRQDIER 181 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q E +P S+ M+ + G+ + Sbjct: 182 QHERDPAESMEMLSLPLGRSV 202 >gi|291613547|ref|YP_003523704.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sideroxydans lithotrophicus ES-1] gi|291583659|gb|ADE11317.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sideroxydans lithotrophicus ES-1] Length = 215 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 73/195 (37%), Positives = 124/195 (63%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++++ FY F+ + ++++ V+T RNP+++V L+ AFV++AG++LLL AEF+A++ ++ Sbjct: 1 MNLETVLFYFFAIVTVLAALRVITARNPLHAVLFLVLAFVSSAGIWLLLEAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+IE R + L +V SA Sbjct: 61 VYVGAVMVLFLFVVMMLDINIERLREGFWRWLPVGLLLAALIGVQMVWVLGAKETSAGMR 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + +N + +G+++YT Y YP E++ +LL++M+ AI L LR RRD KRQDI++Q+ Sbjct: 121 VVKHAADYSNTKELGRLVYTDYVYPFELAAILLLVAMVAAIALTLRRRRDAKRQDINQQV 180 Query: 181 ESNPDNSIVMVKVKS 195 + + + +V V S Sbjct: 181 KVKKQDRLRIVSVPS 195 >gi|312116311|ref|YP_004013907.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodomicrobium vannielii ATCC 17100] gi|311221440|gb|ADP72808.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodomicrobium vannielii ATCC 17100] Length = 200 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 89/199 (44%), Positives = 128/199 (64%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FFYLFS + I S +V++ RNP++SV LI AF+NAAGLF+LLGAEF+AMI ++ Sbjct: 1 MTIAGYFFYLFSIVLISSGAMVISARNPVHSVLFLILAFLNAAGLFVLLGAEFLAMILVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++M LDID R +G++ ++ + Sbjct: 61 VYVGAVAVLFLFVVMTLDIDFGQLRKGMSRYLPIGILVGLVLVTELILVVGGFTMAPGAI 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + +N E IG+VLYT Y Y ++SG +LL++MIGAIVL LRHR D KRQ++++Q+ Sbjct: 121 RPVASAQVSNTEAIGRVLYTDYLYFFQLSGLVLLVAMIGAIVLTLRHRPDSKRQNVARQV 180 Query: 181 ESNPDNSIVMVKVKSGKGI 199 +++I +VKV++GKGI Sbjct: 181 GRKREDAIEVVKVETGKGI 199 >gi|150396122|ref|YP_001326589.1| NADH dehydrogenase subunit J [Sinorhizobium medicae WSM419] gi|150027637|gb|ABR59754.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium medicae WSM419] Length = 222 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 101/204 (49%), Positives = 136/204 (66%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP+YSV LI F NAAGLFLL GAEF+AMI LV Sbjct: 19 MGLQALFFYLFAFIAVASAFMVIAAKNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 78 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VF 115 VYVGAV V FLF++MMLDID E+ + +G+ ILAAELIV A + + Sbjct: 79 VYVGAVAVLFLFVVMMLDIDFAELRAGVLEYAPIGALIGMILAAELIVVAGGWAFSPEIA 138 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR++IKRQ Sbjct: 139 KGIAMPIPAPSERTNTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLRHRQNIKRQS 198 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I +Q+ P+ ++ +V VK G+GI Sbjct: 199 IPQQVARTPETAVEVVTVKPGQGI 222 >gi|114327957|ref|YP_745114.1| NADH-quinone oxidoreductase chain J [Granulibacter bethesdensis CGDNIH1] gi|114316131|gb|ABI62191.1| NADH-quinone oxidoreductase chain J [Granulibacter bethesdensis CGDNIH1] Length = 247 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 128/200 (64%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + ++ FY+FS + I+S +VV+ RNP+++V LI AF NAAGLFLL GAEF+AMI ++VY Sbjct: 2 IAAIAFYVFSAILIVSGAMVVSARNPVHAVLFLILAFFNAAGLFLLTGAEFLAMILVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MML+I+ EV + ++ +G+ G+L EL + + V L Sbjct: 62 VGAVAVLFLFVVMMLNINFAEVRDGWQRYAPVGAAIGGVLLVELAMVLGGWQVAPGASAL 121 Query: 122 --SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 S N +G+++YT Y +++G ILL++MIGAIVL LR R+ + Q+I++Q Sbjct: 122 RFSPRPDHVQNTVALGQIVYTHYVMLFQMAGLILLVAMIGAIVLTLRDRKTSRHQNIAEQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + ++++ +V G+GI Sbjct: 182 VNRRIEDTLQLVNAPVGQGI 201 >gi|163759531|ref|ZP_02166616.1| NADH dehydrogenase subunit J [Hoeflea phototrophica DFL-43] gi|162283128|gb|EDQ33414.1| NADH dehydrogenase subunit J [Hoeflea phototrophica DFL-43] Length = 204 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 95/204 (46%), Positives = 133/204 (65%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFY+F+F+A+ S+F+V+ RNP++SV LI F NAAGLFLL GAEF+AMI LV Sbjct: 1 MGLQALFFYMFAFVAVASAFMVIAARNPVHSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLDID + +GI+ A ++ FS Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTEMKSGALEYAPVGALVGIILAAELIIVLGGNAFSPSAA 120 Query: 121 LS-----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 S + + +N + +G VLYT Y + +I+G +L ++MIGAIVL LRHR IKRQD Sbjct: 121 TSGANPIPALSERSNTQALGDVLYTDYIFFFQIAGLVLFVAMIGAIVLTLRHREHIKRQD 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I++Q+ P+ ++ +VKVK G+GI Sbjct: 181 INQQVARTPETAVEVVKVKPGQGI 204 >gi|194289168|ref|YP_002005075.1| NADH dehydrogenase subunit j [Cupriavidus taiwanensis LMG 19424] gi|193223003|emb|CAQ69008.1| NADH:ubiquinone oxidoreductase complex I, chain J [Cupriavidus taiwanensis LMG 19424] Length = 240 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 71/199 (35%), Positives = 122/199 (61%), Gaps = 3/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+F+ + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A++ ++ Sbjct: 27 MELTTTIFYVFALVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLQAEFLAILLVL 86 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MM+DIDIE + +G I+A IV NF+ + Sbjct: 87 VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMASIVGALIIAEMAIVLVRNFVGTTTP 146 Query: 119 GELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + G +N +GK++YT Y Y E++G ILL+++I A+ L LR R+D+K QD+S Sbjct: 147 VAPAGSQEPGYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRRKDVKAQDVS 206 Query: 178 KQLESNPDNSIVMVKVKSG 196 QL + D + +V + + Sbjct: 207 AQLRTRRDERVRLVPMAAE 225 >gi|162148802|ref|YP_001603263.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter diazotrophicus PAl 5] gi|209545450|ref|YP_002277679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter diazotrophicus PAl 5] gi|161787379|emb|CAP56974.1| putative NADH-quinone oxidoreductase chain J [Gluconacetobacter diazotrophicus PAl 5] gi|209533127|gb|ACI53064.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter diazotrophicus PAl 5] Length = 253 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 127/200 (63%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+F+ + ++S+ +VV+ RNP++SV LI AF NAAGLFL+ GAEF+AMI ++VY Sbjct: 2 MAQIVFYVFATVLVLSAGMVVSARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMILVIVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD+ E+ E ++ G+ +L AEL + ++ V ++ Sbjct: 62 VGAVAVLFLFVVMMLDVRFTEMREGLQRYAPFGAAVGAVLFAELALAFGHWQVARNIADV 121 Query: 122 SRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 S LV N +G VLYT Y + E G +LL++MIGAIVL LR R +RQ+I +Q Sbjct: 122 SHLVPTPGRTNTAALGDVLYTHYIFLFESCGLVLLVAMIGAIVLTLRERPVGRRQNIERQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 E +S+ M+ + G+G+ Sbjct: 182 HERTAADSLDMMALPLGQGV 201 >gi|114151611|ref|YP_740454.1| NADH dehydrogenase subunit 6 [Zea luxurians] gi|110287607|gb|ABG65653.1| NADH dehydrogenase subunit 6 [Zea luxurians] Length = 375 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 11/187 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM +I I R S IG I E+ N + + Sbjct: 61 IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLKYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLE 181 D+ ++ Sbjct: 181 DVFRRNA 187 >gi|295689615|ref|YP_003593308.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Caulobacter segnis ATCC 21756] gi|295431518|gb|ADG10690.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Caulobacter segnis ATCC 21756] Length = 205 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 93/203 (45%), Positives = 133/203 (65%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYL +F+ I + LVV+ RNP++SV LI AF +AAGLF+LLGAEF+AM+ +V Sbjct: 1 MALQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-- 117 VYVGAV V FLF++MMLD+D E+ + + +G GIL E+I A+ A Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELRQGFAQYLPIGGLVGGILTLEMIFVAATVATNGAAA 120 Query: 118 -EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G + N E IG+VLYT Y + +++G +LL++MIGAIVL LRH+ +KRQDI Sbjct: 121 KNGLPNASPGGVPNTEAIGRVLYTDYIFFFQLAGLVLLVAMIGAIVLTLRHKPGVKRQDI 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 KQ+ P + +V++K G+GI Sbjct: 181 GKQVARTPKTGMTLVQIKPGEGI 203 >gi|90423914|ref|YP_532284.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisB18] gi|90105928|gb|ABD87965.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18] Length = 212 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 129/202 (63%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + LFFYL+S + + ++ +V+ RNP+++V LI FVNAAGLF+L+GAEF+AMI ++ Sbjct: 1 MTLPDLFFYLYSGVCVAAATMVIVSRNPVHAVLFLILVFVNAAGLFMLMGAEFLAMILII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VYVGAV V FLF+IMMLDID + IG++ ++ + V Sbjct: 61 VYVGAVAVLFLFVIMMLDIDFKQLREGFFEYLPFGLLIGVIFLAELLLLAGGWVIHPTLT 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + +N E +G VLYT+Y + +ISG ILL++MIGAIVL +RHR +KRQ+IS Sbjct: 121 KAITAPIPDNISNTEALGMVLYTRYIHYFQISGLILLVAMIGAIVLTMRHRVSVKRQNIS 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q NP+ ++ + KV SG+G+ Sbjct: 181 AQNARNPETAMDVRKVASGQGL 202 >gi|258542713|ref|YP_003188146.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-01] gi|256633791|dbj|BAH99766.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-01] gi|256636850|dbj|BAI02819.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-03] gi|256639903|dbj|BAI05865.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-07] gi|256642959|dbj|BAI08914.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-22] gi|256646014|dbj|BAI11962.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-26] gi|256649067|dbj|BAI15008.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-32] gi|256652054|dbj|BAI17988.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655111|dbj|BAI21038.1| NADH-quinone oxidoreductase chain J [Acetobacter pasteurianus IFO 3283-12] Length = 243 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 127/199 (63%), Gaps = 2/199 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L FY+F+ + + S+ +V++ RNP++SV LI AF NAAGLFL+ GAEF+AM+ ++VY Sbjct: 8 MAQLVFYVFATVLLFSAVMVISARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMLLVIVY 67 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLDID + E +K LG G+L AEL++ SN+ + A Sbjct: 68 VGAVAVLFLFVVMMLDIDFSSLREGFQKHAPLGVCVGGVLFAELLMAFSNWKMAPANIVA 127 Query: 122 S-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 V + N E +G V+YT Y + + G +LL++MIGAIVL LR R +RQ+I +Q Sbjct: 128 PLNPVPQLTNTEALGTVIYTHYVFLFQACGLVLLVAMIGAIVLTLRERATGRRQNIDQQH 187 Query: 181 ESNPDNSIVMVKVKSGKGI 199 + ++ +V++ G+ + Sbjct: 188 ARTVEETLELVQLPLGENV 206 >gi|329114687|ref|ZP_08243446.1| NADH-quinone oxidoreductase subunit J [Acetobacter pomorum DM001] gi|326696167|gb|EGE47849.1| NADH-quinone oxidoreductase subunit J [Acetobacter pomorum DM001] Length = 243 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 126/199 (63%), Gaps = 2/199 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L FY+F+ + + S+ +V++ RNP++SV LI AF NAAGLFL+ GAEF+AM+ ++VY Sbjct: 8 MAQLVFYVFATVLLFSAVMVISARNPVHSVLFLILAFFNAAGLFLVAGAEFLAMLLVIVY 67 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLDID + E +K LG G+L AEL++ SN+ + A Sbjct: 68 VGAVAVLFLFVVMMLDIDFSSLREGFQKHAPLGVCVGGVLFAELLMAFSNWKMAPANIVA 127 Query: 122 S-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + N E +G V+YT Y + + G +LL++MIGAIVL LR R +RQ+I KQ Sbjct: 128 PLNPAPQLTNTEALGTVIYTHYVFLFQACGLVLLVAMIGAIVLTLRERATGRRQNIDKQH 187 Query: 181 ESNPDNSIVMVKVKSGKGI 199 + ++ +V++ G+ + Sbjct: 188 ARTVEETLELVQLPLGENV 206 >gi|254294093|ref|YP_003060116.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hirschia baltica ATCC 49814] gi|254042624|gb|ACT59419.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hirschia baltica ATCC 49814] Length = 204 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 76/197 (38%), Positives = 113/197 (57%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + FY+ S + +IS+ V+ RNP++SV LI +F AAGL +L+GAEF+AM+ +VVY Sbjct: 1 MQLIAFYILSTVVLISAISVIASRNPVHSVLWLILSFFTAAGLLVLIGAEFLAMLLIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V FLF++MMLD+D F+ + + I + Sbjct: 61 VGAVAVLFLFVVMMLDVDFAEMRKGFADYFVVGGLVALALLAEIGVVAASANSVEGRNFD 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 N E + VLYT Y +++G +LL++MIGAIVL LRHR D+KRQ + +Q Sbjct: 121 PSPGADTNAEALSNVLYTDYLLLFQMAGIVLLVAMIGAIVLTLRHRPDVKRQKVEEQTAR 180 Query: 183 NPDNSIVMVKVKSGKGI 199 + ++ ++KV G+GI Sbjct: 181 RREEAVELIKVNPGQGI 197 >gi|254439778|ref|ZP_05053272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Octadecabacter antarcticus 307] gi|198255224|gb|EDY79538.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Octadecabacter antarcticus 307] Length = 201 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 81/201 (40%), Positives = 122/201 (60%), Gaps = 2/201 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY F+ I + V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++ Sbjct: 1 MTPVVIAFYAFAATTIGGGLMTVLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AE 118 VYVGAV V FLF++MMLD+D + R + IG++ + A +S E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVLLMQLAMAFGVWDYSDGFE 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 L++ + N + +G V+Y Y ++SG ILL++MIGAIVL LRHR D+KRQ++ Sbjct: 121 TRLAQPIVDVENTKQLGLVIYDDYFLIFQLSGLILLVAMIGAIVLTLRHRTDVKRQNVMV 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 181 QMSRDPAKAMELKDVKPGQGL 201 >gi|15888608|ref|NP_354289.1| NADH dehydrogenase subunit J [Agrobacterium tumefaciens str. C58] gi|15156330|gb|AAK87074.1| NADH ubiquinone oxidoreductase chain J [Agrobacterium tumefaciens str. C58] Length = 204 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 98/204 (48%), Positives = 134/204 (65%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++FFY+F+F+A+ S+F+V+ +NP++SV LI F NAA LFLL GAEF+AMI LV Sbjct: 1 MGLHAVFFYIFAFVAVASAFMVIASKNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D E+ + +G+ ILAAELIV M+ Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELRSGVLQYAPIGALIGVILAAELIVVVGGSMLNPIAA 120 Query: 120 E----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y Y +++G +LL++MIGAIVL LRHR DIKRQD Sbjct: 121 KSITMPIPPAAERTNTAALGDVLYTNYVYFFQLAGLVLLVAMIGAIVLTLRHRTDIKRQD 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 IS Q+ +P ++ VKVK G+GI Sbjct: 181 ISTQVGRDPKTAVTTVKVKPGQGI 204 >gi|260462241|ref|ZP_05810485.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium opportunistum WSM2075] gi|259032101|gb|EEW33368.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 96/202 (47%), Positives = 136/202 (67%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FFYLF+F+A+ S+F+V++ RNP++SV LI F NAAGLF+L GAEF+AMI LVVY Sbjct: 5 LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VFSA 117 VGAV+V FLF++MMLD+D E+ E + +G+ ILAAELIV + + S Sbjct: 65 VGAVMVLFLFVVMMLDVDFAEMKEGALQYAPIGALVGLILAAELIVVLGGYTFAPQLAST 124 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N +G +LYT Y Y +ISG ILL++MIGAIVL LRH+ +KRQ I+ Sbjct: 125 VAKPIPDLAARSNTAALGDILYTDYLYYFQISGLILLVAMIGAIVLTLRHKEGVKRQSIA 184 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ P + + KVKSG+G+ Sbjct: 185 AQVGRTPATGMEIRKVKSGEGV 206 >gi|91776404|ref|YP_546160.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Methylobacillus flagellatus KT] gi|91710391|gb|ABE50319.1| NADH dehydrogenase subunit J [Methylobacillus flagellatus KT] Length = 212 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 114/201 (56%), Gaps = 2/201 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ Q FY + + + + V+T RNP+++ L+ AF AAG++LLL AEF+A+ ++ Sbjct: 1 MIFQDYVFYALAAILLFAGVRVITTRNPVHATLFLVLAFFTAAGIWLLLEAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VYVGAV+V FLF++MMLDI+++ + +G+L A +V FS + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDKMREGFWNALPVALPVGLLMAGEMVMILGSKHFSPDML 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + +N IG+ LYT Y P E++ +LL++++ AI L LR R+D K D ++ Sbjct: 121 STPAPRPAGYSNTAEIGRQLYTDYLLPFELASVVLLVAIVAAIALTLRERKDSKFMDPAE 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q++ + + +V + + K I Sbjct: 181 QVKVKRADRVRIVSMPAEKEI 201 >gi|126727167|ref|ZP_01743004.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2150] gi|126703595|gb|EBA02691.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2150] Length = 204 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 79/204 (38%), Positives = 125/204 (61%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FYLF+ + + S L V R P++SV LI AF ++AGLF+LLGAEF+AM+ ++ Sbjct: 1 MTFFDFTFYLFAIVTVGSGLLCVLARQPVHSVLWLICAFFSSAGLFVLLGAEFIAMLLVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLD+D + + + IG++ + S + E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAQLKAEMAKFMPVALLIGVVLLMELGLVFGSWTVSPDAE 120 Query: 121 -----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++ + + +N +G+++YT+Y Y + +G ILL++MIGAIVL LRHR+D+KRQ Sbjct: 121 GLRAAVTPALDEVHNTAALGQLIYTKYIYLFQAAGLILLVAMIGAIVLTLRHRKDVKRQV 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I Q+ +P +++ + VK G+G+ Sbjct: 181 IRDQILRDPKDAMEIKDVKPGQGL 204 >gi|307942128|ref|ZP_07657479.1| NADH-quinone oxidoreductase subunit j [Roseibium sp. TrichSKD4] gi|307774414|gb|EFO33624.1| NADH-quinone oxidoreductase subunit j [Roseibium sp. TrichSKD4] Length = 204 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 88/204 (43%), Positives = 138/204 (67%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FFYLF+ + + S+F+V+ RNP++SV LI AFVN+AGLF+LLGAE++AM+ +V Sbjct: 1 MFLNAFFFYLFAGVTVASAFMVIAARNPVHSVLFLILAFVNSAGLFVLLGAEYLAMLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSA-- 117 VYVGAV V FLF++MM+D+D + +G +L EL++ S +++ Sbjct: 61 VYVGAVAVLFLFVVMMMDVDFAELRQGFLQYLPAGALVGLVLLIELLMGVSAWILAPGLI 120 Query: 118 --EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 E + + + +N+E IG+VLYT+Y Y ++SG +LL++MIGAIVL LRH+ KRQD Sbjct: 121 GQGSEPTPALNEVSNIEAIGQVLYTKYIYFFQVSGLVLLVAMIGAIVLTLRHKPYAKRQD 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q+ ++++ + KV++GKGI Sbjct: 181 IATQVGRRREDAVEVRKVETGKGI 204 >gi|13471397|ref|NP_102963.1| NADH dehydrogenase subunit J [Mesorhizobium loti MAFF303099] gi|14022139|dbj|BAB48749.1| NADH-ubiquinone dehydrogenase chain 10 [Mesorhizobium loti MAFF303099] Length = 206 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 136/202 (67%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FFYLF+F+A+ S+F+V++ RNP++SV LI F NAAGLF+L GAEF+AMI LVVY Sbjct: 5 LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VFSA 117 VGAV+V FLF++MMLD+D E+ E + +G+ ILAAELI+ + + + Sbjct: 65 VGAVMVLFLFVVMMLDVDFAEMKEGALQYAPIGALVGLILAAELIIVLGGYTFAPKLAAT 124 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N +G +LYT Y Y +ISG ILL++MIGAIVL LRH+ +KRQ I+ Sbjct: 125 VSKPIPDLATRSNTAALGDILYTDYLYYFQISGLILLVAMIGAIVLTLRHKEGVKRQSIA 184 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ P + + KVKSG+G+ Sbjct: 185 AQVGRTPATGMEIRKVKSGEGV 206 >gi|325524299|gb|EGD02411.1| NADH:ubiquinone oxidoreductase subunit J [Burkholderia sp. TJI49] Length = 216 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 73/200 (36%), Positives = 122/200 (61%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G ++ LI+ +A Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDFLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHAA 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KRQ +S Sbjct: 121 HAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ D+ + +VK+++ K Sbjct: 181 DQVKVRRDDRVRLVKMEAEK 200 >gi|299135023|ref|ZP_07028214.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Afipia sp. 1NLS2] gi|298590000|gb|EFI50204.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Afipia sp. 1NLS2] Length = 212 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +VVT RNP++SV LI FVNAAGLF+LL AEF+AMI +V Sbjct: 1 MILPALFFYLFAGVCVASAVMVVTARNPVHSVLFLILTFVNAAGLFVLLNAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--A 117 VYVGAV V FLF+IMMLD+D E+ + + +G I AEL++ A +++ A Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFAELRQGFIEYLPVGLLIGAIFLAELLLVAGGWVLSPNVA 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + N E IG VLYT+Y + +++G +LL++MIGAIVL LRH+ +KRQ+IS Sbjct: 121 HSITAPIPATVTNTEAIGLVLYTRYIHYFQLAGLVLLVAMIGAIVLTLRHKPSVKRQNIS 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q ++ + +V SG+G+ Sbjct: 181 AQNARGKATAMAVRQVPSGQGL 202 >gi|255263382|ref|ZP_05342724.1| NADH-quinone oxidoreductase subunit j [Thalassiobium sp. R2A62] gi|255105717|gb|EET48391.1| NADH-quinone oxidoreductase subunit j [Thalassiobium sp. R2A62] Length = 201 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 2/201 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY F+ I V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++ Sbjct: 1 MTPVVIAFYAFAVSTIAGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLD+D + + IG++ + A +S + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMSKYLPLGLLIGVIVLMQLSLAFGVWDYSEGYQ 120 Query: 121 LSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 +G+ N E +G +LY +Y +++G ILL++MIGAIVL LRHR D+KRQ+I Sbjct: 121 TRLAAPEGDAMNTEALGLLLYDKYILLFQLAGLILLVAMIGAIVLTLRHREDVKRQNIVS 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ +P + + VK G+G+ Sbjct: 181 QILRDPAKQMKLKDVKPGQGL 201 >gi|222085586|ref|YP_002544116.1| NADH-ubiquinone oxidoreductase chain J protein [Agrobacterium radiobacter K84] gi|221723034|gb|ACM26190.1| NADH-ubiquinone oxidoreductase chain J protein [Agrobacterium radiobacter K84] Length = 204 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 102/204 (50%), Positives = 137/204 (67%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFY+F+F+A+ S+F+V++ RNP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 1 MGLQALFFYIFAFVAVASAFMVISARNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G+ ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFSELRAGILEYAPIGALIGIILAAELIVVVGGSVISPEIA 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + N +G VLYT Y Y EI+G +LL++MIGAIVL LRHR IKRQ+ Sbjct: 121 RSVAMPIPALTERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTHIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 IS+Q+ P ++ +VKVK G+G+ Sbjct: 181 ISQQVARTPATAVEVVKVKPGQGV 204 >gi|325292643|ref|YP_004278507.1| NADH dehydrogenase I chain J [Agrobacterium sp. H13-3] gi|325060496|gb|ADY64187.1| NADH dehydrogenase I chain J [Agrobacterium sp. H13-3] Length = 204 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 96/204 (47%), Positives = 134/204 (65%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++FFY+F+F+A+ S+F+V+ +NP++SV LI F NAA LFLL GAEF+AMI LV Sbjct: 1 MGLHAVFFYIFAFVAVASAFMVIASKNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D E+ + +G+ ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELRSGVLQYAPIGALIGIILAAELIVVVGGSVLNPQAA 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y Y +++G +LL++MIGAIVL LRHR DIKRQ+ Sbjct: 121 KSITMPIPSPAVRTNTAALGDVLYTNYVYFFQLAGLVLLVAMIGAIVLTLRHRTDIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 IS Q+ +P ++ VKVK G+GI Sbjct: 181 ISTQVGRDPKTAVTTVKVKPGQGI 204 >gi|115352329|ref|YP_774168.1| NADH dehydrogenase subunit J [Burkholderia ambifaria AMMD] gi|170698118|ref|ZP_02889198.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia ambifaria IOP40-10] gi|171316312|ref|ZP_02905533.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia ambifaria MEX-5] gi|115282317|gb|ABI87834.1| NADH dehydrogenase subunit J [Burkholderia ambifaria AMMD] gi|170136976|gb|EDT05224.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia ambifaria IOP40-10] gi|171098538|gb|EDT43339.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia ambifaria MEX-5] Length = 216 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G + LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVVETALILWRGYGDTHTV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KRQ +S Sbjct: 121 HAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ ++ + +VK+++ K Sbjct: 181 DQVKVRRNDRVRLVKMEAEK 200 >gi|89053681|ref|YP_509132.1| NADH dehydrogenase subunit J [Jannaschia sp. CCS1] gi|88863230|gb|ABD54107.1| NADH dehydrogenase subunit J [Jannaschia sp. CCS1] Length = 205 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 78/205 (38%), Positives = 120/205 (58%), Gaps = 6/205 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYLF+ + VT +NP++SV LI AF+++AGLF+LLGAEFVAM+ ++ Sbjct: 1 MTIVDFTFYLFALSVVAGGLFTVTSKNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLMII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MV 114 VYVGAV V FLF++MMLD+D + + IG++ + A + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMAKYVPLGGLIGVILLMQLTLAFGVWEAADGVD 120 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 SA + +N + +G ++Y Y ++SG ILL++M+GAIVL LRHR D+KRQ Sbjct: 121 ISATPIGTPEGAGDHNTQALGLIVYDDYFLAFQLSGLILLVAMVGAIVLTLRHRVDVKRQ 180 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 D+ Q+ +P ++ + VK G+G+ Sbjct: 181 DVVAQMMRDPAKAMELKDVKPGQGL 205 >gi|218679751|ref|ZP_03527648.1| NADH dehydrogenase subunit J [Rhizobium etli CIAT 894] Length = 206 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 100/204 (49%), Positives = 134/204 (65%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+AI S+F+V+ +NP++SV LI F NAAGLFLL GAEF+AMI LV Sbjct: 3 MGLQALFFYLFAFVAIASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLAGAEFLAMILLV 62 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 63 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPEIA 122 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y Y EI+G +LL++MIGAIVL LRHR +IKRQ+ Sbjct: 123 KSVAMPIPALTERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTNIKRQN 182 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I +Q+ P ++ +V VK G+G+ Sbjct: 183 IPRQVARTPATAVEVVSVKPGQGV 206 >gi|146341104|ref|YP_001206152.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. ORS278] gi|146193910|emb|CAL77927.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) (NDH-1, chain J) [Bradyrhizobium sp. ORS278] Length = 212 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 137/202 (67%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +V+ +NP++SV LI AFVNA+GLF+L+GAEF+AMI +V Sbjct: 1 MILPALFFYLFAAVCVASAVMVIVSKNPVHSVLYLILAFVNASGLFVLMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SA 117 VYVGAV V FLF+IMMLD+D E+ E + +G GI EL++ S +++ + Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFTELREGFLQYMPIGLVIGGIFLFELLLTVSYWVINPSTP 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + N E +G VLYT+Y + ++SG ILL++MIGAIVL LRH+ +KRQDI+ Sbjct: 121 KAITAAIPTNVTNTEALGLVLYTKYVHYFQLSGMILLVAMIGAIVLTLRHKASVKRQDIN 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q PD ++ + KV G+G+ Sbjct: 181 VQNARTPDMAMAVRKVAVGQGL 202 >gi|209548873|ref|YP_002280790.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534629|gb|ACI54564.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 204 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 100/204 (49%), Positives = 135/204 (66%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPEIA 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y Y EI+G +LL++MIGAIVL LRHR +IKRQ+ Sbjct: 121 KSVAMPIPALSERTNTAALGDVLYTNYVYFFEIAGLVLLVAMIGAIVLTLRHRTNIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I +Q+ P ++ +V VK G+G+ Sbjct: 181 IPRQVARTPATAVEVVSVKPGQGV 204 >gi|222148284|ref|YP_002549241.1| NADH dehydrogenase subunit J [Agrobacterium vitis S4] gi|221735272|gb|ACM36235.1| NADH ubiquinone oxidoreductase chain J [Agrobacterium vitis S4] Length = 204 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 101/204 (49%), Positives = 137/204 (67%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++FFYLF+F+A+ S+F+V++ RNP++SV LI FVNAAGLF+L GAEF+AMI LV Sbjct: 1 MGLQAIFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFVNAAGLFMLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ K G L + I+AAELI + A Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGASKYGPLAALIGAIVAAELIFVIGGSAISPAAK 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y + +I+G +LL++MIGAIVL LRHR+ IKRQ+ Sbjct: 121 QAITMPIPALADRQNTAALGDVLYTNYVFFFQIAGLVLLVAMIGAIVLTLRHRQHIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q+ P +I +VKVK G+GI Sbjct: 181 IAHQVARGPATAIKVVKVKPGQGI 204 >gi|107023179|ref|YP_621506.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia AU 1054] gi|116690261|ref|YP_835884.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia HI2424] gi|170733600|ref|YP_001765547.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia MC0-3] gi|105893368|gb|ABF76533.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia AU 1054] gi|116648350|gb|ABK08991.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia HI2424] gi|169816842|gb|ACA91425.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia cenocepacia MC0-3] Length = 216 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G ++ LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHTV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KRQ +S Sbjct: 121 HAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ ++ + +VK+++ K Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200 >gi|221199665|ref|ZP_03572709.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2M] gi|221205435|ref|ZP_03578450.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2] gi|221174273|gb|EEE06705.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2] gi|221180950|gb|EEE13353.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD2M] Length = 216 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 72/200 (36%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G ++ LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDFLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHAV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 S +N IGKV+YT Y + EI+G +LL+++I AI L +D KRQ +S Sbjct: 121 HAMTSGATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTSHKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ D+ + +VK+++ K Sbjct: 181 DQVKVRRDDRVRLVKMEADK 200 >gi|172061200|ref|YP_001808852.1| NADH dehydrogenase subunit J [Burkholderia ambifaria MC40-6] gi|171993717|gb|ACB64636.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia ambifaria MC40-6] Length = 216 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G + LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVVETALILWRGYGDTHAV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KRQ +S Sbjct: 121 HAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ ++ + +VK+++ K Sbjct: 181 DQVKVRRNDRVRLVKMEAEK 200 >gi|254450873|ref|ZP_05064310.1| NADH dehydrogenase i, j subunit [Octadecabacter antarcticus 238] gi|198265279|gb|EDY89549.1| NADH dehydrogenase i, j subunit [Octadecabacter antarcticus 238] Length = 197 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 119/196 (60%), Gaps = 2/196 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY F+ I + V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGA Sbjct: 2 IAFYAFAVTTIGGGLMTVLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGELSR 123 V V FLF++MMLD+D + R + IG++ + A +S E L + Sbjct: 62 VAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVLLMQLALAFGVWDYSDGFETRLVQ 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + N + +G VLY Y ++SG ILL++MIGAIVL LRHR D+KRQ++ Q+ + Sbjct: 122 PIMDVENTKQLGLVLYDDYFLIFQLSGLILLVAMIGAIVLTLRHRTDVKRQNVMVQMSRD 181 Query: 184 PDNSIVMVKVKSGKGI 199 P + + VK G+G+ Sbjct: 182 PAKQMELKDVKPGQGL 197 >gi|99080597|ref|YP_612751.1| NADH dehydrogenase subunit J [Ruegeria sp. TM1040] gi|99036877|gb|ABF63489.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040] Length = 200 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---AEG 119 VGAV V FLF++MMLD+D + R + IG++ V A + AE Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYTPLALLIGLVILMQFVIAYGSWESAHSVAEN 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +N E +G +LY QY +++G ILL++MIGAIVL LRHR+D+KRQD+ Q Sbjct: 121 LSQPIPTDRHNTEALGLILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDVLAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + +K G+G+ Sbjct: 181 MYRDPAKAMELKDIKPGQGL 200 >gi|27380019|ref|NP_771548.1| NADH dehydrogenase subunit J [Bradyrhizobium japonicum USDA 110] gi|27353173|dbj|BAC50173.1| NADH ubiquinone oxidoreductase chain J [Bradyrhizobium japonicum USDA 110] Length = 212 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 89/202 (44%), Positives = 136/202 (67%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +V+ RNP++SV LI AFVNA+GLF+L+GAEF+ M+ +V Sbjct: 1 MILPALFFYLFAGVCVASAVMVIVSRNPVHSVLYLILAFVNASGLFVLMGAEFLGMMLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-- 117 VYVGAV V FLF+IMMLD+D +E+ E + +G GI EL++ +++ Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFLELREGFIEYLPVGLVIGGIFLFELLLTVGFWVINPGVS 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + +N E +G VLYT+Y Y +++G +LL++MIGAIVL LRH+ +KRQDI+ Sbjct: 121 KTITAAIPTNVSNTEALGLVLYTKYVYYFQLAGMVLLVAMIGAIVLTLRHKVSVKRQDIN 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q PD ++ M KV G+G+ Sbjct: 181 VQNARTPDMAMAMRKVAPGQGL 202 >gi|254247666|ref|ZP_04940987.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Burkholderia cenocepacia PC184] gi|124872442|gb|EAY64158.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Burkholderia cenocepacia PC184] Length = 216 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVPFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G ++ LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHTV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KRQ +S Sbjct: 121 HAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ ++ + +VK+++ K Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200 >gi|206560694|ref|YP_002231459.1| NADH dehydrogenase subunit J [Burkholderia cenocepacia J2315] gi|198036736|emb|CAR52636.1| NADH dehydrogenase I chain J [Burkholderia cenocepacia J2315] Length = 216 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G ++ LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHTV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KRQ +S Sbjct: 121 HAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ ++ + +VK+++ K Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200 >gi|73540673|ref|YP_295193.1| NADH dehydrogenase subunit J [Ralstonia eutropha JMP134] gi|72118086|gb|AAZ60349.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] Length = 240 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 72/199 (36%), Positives = 120/199 (60%), Gaps = 3/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+F+ + ++S+ V+T +NP++S L+ +F AA ++LLL AEF+A++ ++ Sbjct: 27 MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLSFFTAAAIWLLLKAEFLAILLVL 86 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MM+DIDIE + +G I+A IV NF+ +A Sbjct: 87 VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPLASVVGALIIAEMAIVLVRNFIGTTAP 146 Query: 119 -GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 +N +GK++Y Y Y E++G ILL+++I A+ L LR R+D+K QDI Sbjct: 147 VLPAGSQDPGYSNTAALGKLIYNDYIYAFEVAGIILLVAIIAAVALTLRRRKDVKGQDIP 206 Query: 178 KQLESNPDNSIVMVKVKSG 196 QL + D+ + +V + + Sbjct: 207 SQLRTRRDDRVRLVAMPAE 225 >gi|167646785|ref|YP_001684448.1| NADH dehydrogenase subunit J [Caulobacter sp. K31] gi|167349215|gb|ABZ71950.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Caulobacter sp. K31] Length = 203 Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 89/201 (44%), Positives = 129/201 (64%), Gaps = 4/201 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ++ FYL + +++ LVV+ RNP++SV LI AF +AAGLF+LLGAEF+AM+ +VVY Sbjct: 1 MQAIAFYLLAVATVVAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLIVVY 60 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-- 119 VGAV V FLF++MMLD+D E+ + + +G G L E+I A+ G Sbjct: 61 VGAVAVLFLFVVMMLDVDFTELRQGFAQYLPIGGLVAGFLTLEMIFIAATVATNGKAGLN 120 Query: 120 -ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + N E IG+VLYT Y + +++G +LL++MIGAIVL LRH+ +KRQDI K Sbjct: 121 ALPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKAGVKRQDIGK 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ P + +V++K G+GI Sbjct: 181 QIARTPKTGMEIVQIKPGEGI 201 >gi|78067037|ref|YP_369806.1| NADH dehydrogenase subunit J [Burkholderia sp. 383] gi|77967782|gb|ABB09162.1| NADH dehydrogenase subunit J [Burkholderia sp. 383] Length = 216 Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G ++ LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTQTV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N IGKV+YT Y + EI+G +LL+++I AI L R +D KRQ +S Sbjct: 121 HAMATGEMANWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTERKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ ++ + +VK+++ K Sbjct: 181 DQVKVRRNDRVRLVKMEAEK 200 >gi|209885061|ref|YP_002288918.1| j subunit of NADH dehydrogenase i [Oligotropha carboxidovorans OM5] gi|209873257|gb|ACI93053.1| j subunit of NADH dehydrogenase i [Oligotropha carboxidovorans OM5] Length = 212 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 88/202 (43%), Positives = 125/202 (61%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +VVT RNP++SV LI FVNAAGLF+LL AEF+AMI +V Sbjct: 1 MILPALFFYLFAGVCVASAVMVVTARNPVHSVLFLILTFVNAAGLFVLLNAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VYVGAV V FLF+IMMLD+D +G + ++ V S + Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFAALRQGFIEYLPVGLLVGAIFLVELLLVVGGWVLSPDVA 120 Query: 119 -GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + N E IG VLYT+Y + +++G +LL++MIGAIVL LRH+ ++KRQ+IS Sbjct: 121 HSITAPIPTTVTNTEAIGLVLYTRYIHYFQLAGLVLLVAMIGAIVLTLRHKPNVKRQNIS 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q +I M KV G+G+ Sbjct: 181 VQNARGKATAIAMRKVAPGQGL 202 >gi|114771828|ref|ZP_01449221.1| NADH dehydrogenase subunit J [alpha proteobacterium HTCC2255] gi|114547644|gb|EAU50535.1| NADH dehydrogenase subunit J [alpha proteobacterium HTCC2255] Length = 204 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 87/204 (42%), Positives = 132/204 (64%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYLFS A++S+ VV RNP++SV LI F +AA +F+L+GAEFVAM+ + Sbjct: 1 MTITLFAFYLFSITAVMSALFVVVARNPVHSVLWLILTFFSAASMFVLMGAEFVAMLLAI 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D +E+ +K +GS +L EL + S++ V G Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVELKSGMQKYFLIGSSIGLVLLMELGLVISHWKVAPEAG 120 Query: 120 EL----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 L + + +N +G++LY+ Y Y +I+G ILL +MIGAIVL LRHR D+KRQ Sbjct: 121 SLLQSPTPPIDTTHNTLALGQILYSDYIYLFQIAGLILLTAMIGAIVLTLRHRTDVKRQS 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q++ +P +++ ++ VK G+G+ Sbjct: 181 VVDQMQRDPADAMEVITVKPGQGL 204 >gi|86357248|ref|YP_469140.1| NADH dehydrogenase subunit J [Rhizobium etli CFN 42] gi|86281350|gb|ABC90413.1| NADH-ubiquinone oxidoreductase chain J protein [Rhizobium etli CFN 42] Length = 204 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 100/204 (49%), Positives = 136/204 (66%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPDIA 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IKRQ+ Sbjct: 121 KSVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 IS+Q+ P ++ +V VK G+G+ Sbjct: 181 ISRQVARTPATAVEVVSVKPGQGV 204 >gi|254251870|ref|ZP_04945188.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia dolosa AUO158] gi|124894479|gb|EAY68359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia dolosa AUO158] Length = 216 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G ++ LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDYLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHTV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 S +N IGKV+YT Y + EI+G +LL+++I AI L + +D KRQ +S Sbjct: 121 HAMTSAATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTAQKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 +Q++ ++ + +VK+++ K Sbjct: 181 EQVKVRRNDRVRLVKMEADK 200 >gi|116251476|ref|YP_767314.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. viciae 3841] gi|115256124|emb|CAK07205.1| putative NADH-quinone oxidoreductase subunit 10 [Rhizobium leguminosarum bv. viciae 3841] Length = 204 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 99/204 (48%), Positives = 135/204 (66%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGVILAAELIVVIGGSVISPEIA 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IKRQ+ Sbjct: 121 KTVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I +Q+ P ++ +V VK G+G+ Sbjct: 181 IPRQVARTPATAVEVVSVKPGQGV 204 >gi|319782991|ref|YP_004142467.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168879|gb|ADV12417.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 134/202 (66%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FFYLF+F+A+ S+F+V++ RNP++SV LI F NAAGLF+L GAEF+AMI LVVY Sbjct: 5 LEAAFFYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVY 64 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VFSA 117 VGAV+V FLF++MMLD+D E+ + +G+ ILAAELIV + + S Sbjct: 65 VGAVMVLFLFVVMMLDVDFAELKSGALQYAPIGALVGLILAAELIVVLGGYTFAPQLAST 124 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + N +G +LYT Y Y +ISG +LL++MIGAIVL LRH+ +KRQ I+ Sbjct: 125 VSKPIPDLATRTNTAALGDILYTDYLYYFQISGLVLLVAMIGAIVLTLRHKPGVKRQSIA 184 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ P + + KVK+G+G+ Sbjct: 185 AQVGRTPATGMEIRKVKTGEGL 206 >gi|161524213|ref|YP_001579225.1| NADH dehydrogenase subunit J [Burkholderia multivorans ATCC 17616] gi|189351030|ref|YP_001946658.1| NADH dehydrogenase subunit J [Burkholderia multivorans ATCC 17616] gi|221211744|ref|ZP_03584723.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD1] gi|160341642|gb|ABX14728.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia multivorans ATCC 17616] gi|189335052|dbj|BAG44122.1| NADH dehydrogenase I chain J [Burkholderia multivorans ATCC 17616] gi|221169105|gb|EEE01573.1| NADH dehydrogenase I, J subunit [Burkholderia multivorans CGD1] Length = 216 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---ILAAELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ KR + +G ++ LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDFLRRDFKRFVPMATVVGAIIVIETALILWRGYGDTHAV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 S +N IGKV+YT Y + EI+G +LL+++I AI L +D KRQ +S Sbjct: 121 HAMTSGATEGWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTSHKGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ ++ + +VK+++ K Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200 >gi|115524539|ref|YP_781450.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisA53] gi|115518486|gb|ABJ06470.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] Length = 212 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + LFFYL+S + S+ +V+ RNP+++V LI F N+AGLF+LLGAEF+AMI ++ Sbjct: 1 MTLPDLFFYLYSAGCVASAVMVIVSRNPVHAVLFLILVFANSAGLFVLLGAEFLAMILVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VYVGAV V FLF+IMMLDID + +G + ++ + Sbjct: 61 VYVGAVAVLFLFVIMMLDIDFKQLREGFLSHLPVGLLVGAVFLAELLLLAAGWAIRPTVT 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + S + N E +G VLYT Y + +I+G +LL+SMIGAIVL +RHR +KRQDI+ Sbjct: 121 KAITSPIPSGVGNTEALGLVLYTTYIHYFQIAGMVLLVSMIGAIVLTMRHRSSVKRQDIA 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q +P+ ++ + KV SG+G+ Sbjct: 181 AQNARSPETAMAVRKVASGQGL 202 >gi|163746213|ref|ZP_02153572.1| NADH dehydrogenase subunit J [Oceanibulbus indolifex HEL-45] gi|161380958|gb|EDQ05368.1| NADH dehydrogenase subunit J [Oceanibulbus indolifex HEL-45] Length = 200 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ I V RNP++SV LI +F++AAGLF+LLGAEFVAM+ ++VY Sbjct: 1 MTVFSFYLFAISVITGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLD+D + R + I ++ V A SA E Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIALVILMQFVMAFGAWEQSAAAEGL 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L+ + N E +G +LY +Y +++G ILL++MIGAIVL LRHR+D+KRQD+ Q Sbjct: 121 RLNTIDPDRFNTEALGLLLYDRYFLLFQLAGLILLVAMIGAIVLTLRHRKDVKRQDVVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VKSG+G+ Sbjct: 181 MMRDPAKAMELRDVKSGQGL 200 >gi|241204097|ref|YP_002975193.1| NADH dehydrogenase subunit J [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857987|gb|ACS55654.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 204 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 99/204 (48%), Positives = 135/204 (66%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ +NP++SV LI F NAAGLFLLLGAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFVAVASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLLGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGVILAAELIVVIGGSVISPEIA 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IKRQ+ Sbjct: 121 KSVAMPIPALSERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I +Q+ P ++ +V VK G+G+ Sbjct: 181 IPRQVARTPATAVKVVSVKPGQGV 204 >gi|254509596|ref|ZP_05121663.1| NADH dehydrogenase i, j subunit [Rhodobacteraceae bacterium KLH11] gi|221533307|gb|EEE36295.1| NADH dehydrogenase i, j subunit [Rhodobacteraceae bacterium KLH11] Length = 200 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ AI V R P++SV LI +F+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MTVFAFYLFAISAITGGLFTVISRQPVHSVLWLILSFLSSAGLFVLLGAEFVAMLLIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF---SAEG 119 VGAV V FLF++MMLD+D + R + IG++ V A +A Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGAWDSAQGAAAN 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +N E +G +LY QY +++G ILL++MIGAIVL LRHR+DIKRQDI Q Sbjct: 121 LAQPVPTDRHNTEALGVILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDIKRQDIIGQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200 >gi|149914593|ref|ZP_01903123.1| NADH dehydrogenase subunit J [Roseobacter sp. AzwK-3b] gi|149811386|gb|EDM71221.1| NADH dehydrogenase subunit J [Roseobacter sp. AzwK-3b] Length = 202 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 85/202 (42%), Positives = 120/202 (59%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M + FYLF+ A+ V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++ Sbjct: 1 MSMTVMSFYLFAISALAGGLFTVISRNPVHSVLWLILAFISSAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLD+D + R + IG++ A S E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAALKAEMARYMPLALLIGVILLMQFGLAFGNWQMSEGAE 120 Query: 121 LSRLVFKGN---NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 +R + N +G +LY +Y + SG ILL++MIGAIVL LRHR DIKRQD+ Sbjct: 121 AARAAVTPDGVENTAALGMLLYDKYFLLFQTSGLILLVAMIGAIVLTLRHRSDIKRQDVL 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 181 AQMYRDPAKAMELKDVKPGQGL 202 >gi|134296424|ref|YP_001120159.1| NADH dehydrogenase subunit J [Burkholderia vietnamiensis G4] gi|134139581|gb|ABO55324.1| NADH dehydrogenase subunit J [Burkholderia vietnamiensis G4] Length = 216 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSA 117 VYVGAV+V FLF++MMLDI+I+ K+ + +G + LI+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDFLRRDFKKFVPMATVVGAIIVVETALILWRGYGDTHTV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N IGKV+YT Y + EI+G +LL+++I AI L RH +D KRQ +S Sbjct: 121 HAMATGAMADWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIGLTARHGKDSKRQRVS 180 Query: 178 KQLESNPDNSIVMVKVKSGK 197 Q++ ++ + +VK+++ K Sbjct: 181 DQVKVRRNDRVRLVKMEADK 200 >gi|254476174|ref|ZP_05089560.1| NADH dehydrogenase i, j subunit [Ruegeria sp. R11] gi|214030417|gb|EEB71252.1| NADH dehydrogenase i, j subunit [Ruegeria sp. R11] Length = 200 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MTVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLD+D + R + IG++ V A + Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGAWESAPAAGSQ 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +N E +G +LY QY ++SG ILL++MIGAIVL LRHR+D+KRQD+ Q Sbjct: 121 LAQPIPADKHNTEALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200 >gi|254466369|ref|ZP_05079780.1| NADH dehydrogenase i, j subunit [Rhodobacterales bacterium Y4I] gi|206687277|gb|EDZ47759.1| NADH dehydrogenase i, j subunit [Rhodobacterales bacterium Y4I] Length = 200 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 80/200 (40%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ I V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MSVFAFYLFAISTITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLD+D + R + IG++ V A + + Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGVWETAHQAPEL 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + +N E +G ++Y QY +++G ILL++MIGAIVL LRHR D+KRQD+ Q Sbjct: 121 LANPVPADRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRTDVKRQDVVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPAKAMELRDVKPGQGL 200 >gi|253998392|ref|YP_003050455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus sp. SIP3-4] gi|313200469|ref|YP_004039127.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus sp. MP688] gi|253985071|gb|ACT49928.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus sp. SIP3-4] gi|312439785|gb|ADQ83891.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylovorus sp. MP688] Length = 213 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 64/197 (32%), Positives = 109/197 (55%), Gaps = 2/197 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FY+ + + + + V+T RNP+++ L+ AF AAG++LLL AEF+A+ ++ Sbjct: 1 MNFNDYVFYVLAAILLFAGLRVITSRNPVHAALHLVLAFFTAAGIWLLLEAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VYVGAV+V FLF++MMLDI+++ + +GIL +V F + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDKLREGFWEALPIALPVGILMTLEMVMILGSKHFGVDRV 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + +N +G+ LYT Y P E++ +LL++++ AI L LR R+D K D ++ Sbjct: 121 AAPTPHPAGYSNTAELGRQLYTDYLLPFELASVVLLVAIVAAIALTLRDRKDSKFIDPAE 180 Query: 179 QLESNPDNSIVMVKVKS 195 Q++ + I MV + + Sbjct: 181 QVKVKRADRIRMVSMPA 197 >gi|56697605|ref|YP_167974.1| NADH dehydrogenase subunit J [Ruegeria pomeroyi DSS-3] gi|56679342|gb|AAV96008.1| NADH dehydrogenase I, J subunit [Ruegeria pomeroyi DSS-3] Length = 200 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLD+D + R + IG++ V A + Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAYGAWETAEGAAGH 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +N E +G ++Y QY +++G ILL++MIGAIVL LRHR+D+KRQDI Q Sbjct: 121 LAQPMPADRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDIVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPAKAMELKDVKPGQGL 200 >gi|254459906|ref|ZP_05073322.1| NADH-quinone oxidoreductase chain j [Rhodobacterales bacterium HTCC2083] gi|206676495|gb|EDZ40982.1| NADH-quinone oxidoreductase chain j [Rhodobacteraceae bacterium HTCC2083] Length = 202 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 81/202 (40%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYLF+ V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++ Sbjct: 1 MSVAVFTFYLFAICTFTGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLDID + + + IG++ A S + Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFAELKAEMVKYMPLALLIGLVLLMQFTMAFGVWEASDQAA 120 Query: 121 ---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + +N E +G +LY +Y ++SG ILL++MIGAIVL LRHR D+KRQD+ Sbjct: 121 GLRGAVTPTDAHNTEALGLLLYDKYFLIFQLSGMILLVAMIGAIVLTLRHRTDVKRQDVM 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 181 AQMHRDPAKAMELKDVKPGQGL 202 >gi|190891296|ref|YP_001977838.1| NADH-ubiquinone oxidoreductase, chain J [Rhizobium etli CIAT 652] gi|190696575|gb|ACE90660.1| NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli CIAT 652] Length = 204 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 99/204 (48%), Positives = 134/204 (65%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+AI S+F+V+ +NP++SV LI F NAAGLFLL GAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFVAIASAFMVIWAKNPVHSVLFLILVFFNAAGLFLLAGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID E+ + +G ILAAELIV ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGGLIGIILAAELIVVIGGSVISPEIA 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IKRQ+ Sbjct: 121 KTVAMPIPALTERTNTAALGDVLYTNYVYFFQIAGLVLLVAMIGAIVLTLRHRTNIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I +Q+ P ++ +V VK G+G+ Sbjct: 181 IPRQVARTPATAVEVVSVKPGQGV 204 >gi|113867079|ref|YP_725568.1| NADH dehydrogenase subunit J [Ralstonia eutropha H16] gi|113525855|emb|CAJ92200.1| NADH dehydrogenase chain J [Ralstonia eutropha H16] Length = 214 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 73/199 (36%), Positives = 123/199 (61%), Gaps = 3/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+F+ + ++S+ V+T +NP++S L+ +F AA +++LL AEF+A++ ++ Sbjct: 1 MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLSFFTAAAIWMLLKAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MM+DIDIE + +G I+A IV NF+ + Sbjct: 61 VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMASVVGALIIAEMAIVLVRNFIGTTTP 120 Query: 119 GELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + G +N +GK++YT Y Y E++G ILL+++I A+ L LR R+D+K QD+S Sbjct: 121 VATNGSQDPGYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRRKDVKAQDVS 180 Query: 178 KQLESNPDNSIVMVKVKSG 196 QL + D + +V ++S Sbjct: 181 AQLRTRRDERVRLVPMQSE 199 >gi|75676069|ref|YP_318490.1| NADH dehydrogenase subunit J [Nitrobacter winogradskyi Nb-255] gi|74420939|gb|ABA05138.1| NADH dehydrogenase subunit J [Nitrobacter winogradskyi Nb-255] Length = 212 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 86/202 (42%), Positives = 128/202 (63%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +V++ RNP++SV LI AFVNAAGLF+L+GAEF+AMI +V Sbjct: 1 MILPALFFYLFAGVCVASAAMVISSRNPVHSVLFLILAFVNAAGLFILMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSA 117 VYVGAV V FLF+IMMLD+D I + L+V Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFAELREGFLEYLPFGLVIAAIFLLELLLVVGGWTLNPAVT 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + +N E +G VLYT+Y + +++G +LL++MIGAIVL LRHR +KRQDI+ Sbjct: 121 KSITAAIPGDVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHRAGVKRQDIN 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q P+ ++ + +V SG+G+ Sbjct: 181 VQNARTPEMAMSVRQVASGQGL 202 >gi|110680453|ref|YP_683460.1| NADH dehydrogenase subunit J [Roseobacter denitrificans OCh 114] gi|109456569|gb|ABG32774.1| NADH-quinone oxidoreductase chain J [Roseobacter denitrificans OCh 114] Length = 200 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ I V RNP++SV LI AF++AAGLF+LLGAEFVAM+ ++VY Sbjct: 1 MTVFAFYLFAISVIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVLLGAEFVAMLLIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLD+D + + + IG++ A +A E Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMSKYLPLALLIGVVLLMQFAIAFGAWESNAAAEGM 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 +N E +G +LY QY ++SG ILL++MIGAIVL LRHR D+KRQD+ Q Sbjct: 121 RAQVTPVDRHNTEALGMILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRSDVKRQDVVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VKSG+G+ Sbjct: 181 MMRDPAKAMELKDVKSGQGL 200 >gi|146278032|ref|YP_001168191.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides ATCC 17025] gi|145556273|gb|ABP70886.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides ATCC 17025] Length = 204 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 76/204 (37%), Positives = 123/204 (60%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + L FY F+ A+ ++ +VVT RN +++V LI F+++AG+F+LLGAEFVAM+ ++ Sbjct: 1 MSVADLAFYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLD+D E + R + IGI+ + V + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFEALKSEMARYMPVAALIGIVILLQLSMGIGAWVTAEGAP 120 Query: 121 -----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N +G ++Y +Y Y + +G ILL++M+GAI+L LR RRD+KRQ+ Sbjct: 121 GLRQAPTPDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q+ +P ++ + VK G+G+ Sbjct: 181 VLAQMWRDPAEAMELKDVKPGQGL 204 >gi|15965028|ref|NP_385381.1| NADH dehydrogenase subunit J [Sinorhizobium meliloti 1021] gi|307301100|ref|ZP_07580869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti BL225C] gi|307317834|ref|ZP_07597272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti AK83] gi|15074207|emb|CAC45854.1| Probable NADH dehydrogenase I chain J transmembrane protein [Sinorhizobium meliloti 1021] gi|306896596|gb|EFN27344.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti AK83] gi|306904055|gb|EFN34641.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti BL225C] Length = 204 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 101/204 (49%), Positives = 134/204 (65%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+LFFYLF+F+A+ S+F+V+ RNP+YSV LI F NAAGLFLL GAEF+AMI LV Sbjct: 1 MGLQALFFYLFAFIAVASAFMVIAARNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VF 115 VYVGAV V FLF++MMLDID E+ + +G+ ILAAELIV + Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGALIGLILAAELIVVVGGSAFSPEIA 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR++IKRQ Sbjct: 121 KGIAMPIPAPSERTNTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLRHRQNIKRQS 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I +Q+ P+ ++ +V VK G+GI Sbjct: 181 IPQQVARTPETAVEVVTVKPGQGI 204 >gi|84516723|ref|ZP_01004081.1| NADH dehydrogenase subunit J [Loktanella vestfoldensis SKA53] gi|84509191|gb|EAQ05650.1| NADH dehydrogenase subunit J [Loktanella vestfoldensis SKA53] Length = 201 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 83/201 (41%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FYLF+ + V RNP++SV LI AF+++AGLF+ LGAEFVAM+ ++ Sbjct: 1 MSVFAFTFYLFAISTVTGGLFTVISRNPVHSVLWLILAFLSSAGLFVTLGAEFVAMLMII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AE 118 VYVGAV V FLF++MMLD+D + + + IG++ + A FS E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAGLKAEMTKYLPLALLIGVVILMQLAMALGVWGFSEGVE 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G ++ V + +N +G +LY QY ++SG ILL++MIGAIVL LRHR DIKRQ++ Sbjct: 121 GRIAAPVGELDNTRALGMLLYDQYFLLFQLSGLILLVAMIGAIVLTLRHRVDIKRQNVLN 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 181 QMYRDPAKAMELRDVKPGQGL 201 >gi|304391411|ref|ZP_07373353.1| NADH-quinone oxidoreductase chain 10 [Ahrensia sp. R2A130] gi|303295640|gb|EFL89998.1| NADH-quinone oxidoreductase chain 10 [Ahrensia sp. R2A130] Length = 203 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 131/204 (64%), Gaps = 6/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +LFFYLF+ + + S+F+V+ RNP++SV LI F NAAGLF+L GAEF+A+I +V Sbjct: 1 MGVAALFFYLFATICVASAFMVIASRNPVHSVLFLILCFFNAAGLFMLTGAEFLALILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV V FLF++MMLD+D + IGI+ A ++ + F E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELRDGFLQYMPIGAVIGIILAVELILVLGGLSFDPEIA 120 Query: 120 ----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + + +N++ IG +LYT+Y + ++ G ILL++MIGAIVL L HR D++RQ+ Sbjct: 121 ARAVQPIPDLAEVSNIQAIGDLLYTKYIFFFQLCGLILLVAMIGAIVLTLSHRPDVRRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q+ +P++ + + VK G+GI Sbjct: 181 IADQVARDPND-VELRSVKPGEGI 203 >gi|126736050|ref|ZP_01751794.1| NADH dehydrogenase (quinone) [Roseobacter sp. CCS2] gi|126714607|gb|EBA11474.1| NADH dehydrogenase (quinone) [Roseobacter sp. CCS2] Length = 201 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 2/201 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FYLF+ + + V RNP++SV LI AF+++AGLF+ LGAEFVAM+ ++ Sbjct: 1 MTVFAFTFYLFAVTTVTGGLMTVVSRNPVHSVLWLILAFLSSAGLFVTLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AE 118 VYVGAV V FLF++MMLD+D + + IG++ + A F+ E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMTKYLPLGLLIGVVILMQLALAFGVWGFADGVE 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G ++ +N +G ++Y +Y ++SG ILL++MIGAIVL LRHR DIKRQ++ Sbjct: 121 GRIAAPTGDLDNTRALGLLIYDKYILLFQLSGLILLVAMIGAIVLTLRHRVDIKRQNVLA 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 181 QMYRDPAKAMELKDVKPGQGL 201 >gi|163741478|ref|ZP_02148869.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis 2.10] gi|161385212|gb|EDQ09590.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis 2.10] Length = 200 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121 VGAV V FLF++MMLD+D + R + IG++ V A + Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAYGAWETAPAAATQ 120 Query: 122 --SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +N E +G ++Y QY ++SG ILL++MIGAIVL LRHR+D+KRQD+ Q Sbjct: 121 LAQPIPTDQHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPATAMELKDVKPGQGL 200 >gi|259418750|ref|ZP_05742667.1| NADH-quinone oxidoreductase subunit j [Silicibacter sp. TrichCH4B] gi|259344972|gb|EEW56826.1| NADH-quinone oxidoreductase subunit j [Silicibacter sp. TrichCH4B] Length = 198 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGA Sbjct: 2 FAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---AEGELS 122 V V FLF++MMLD+D + R + IG++ V A + A+ Sbjct: 62 VAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVIAYGSWESAHDVAQNLSQ 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N E +G ++Y QY +++G ILL++MIGAIVL LRHR+D+KRQD+ Q+ Sbjct: 122 PIPVDRHNTEALGLIIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDVLAQMYR 181 Query: 183 NPDNSIVMVKVKSGKGI 199 +P ++ + +K G+G+ Sbjct: 182 DPAKAMELKDIKPGQGL 198 >gi|260434166|ref|ZP_05788137.1| NADH-quinone oxidoreductase subunit j [Silicibacter lacuscaerulensis ITI-1157] gi|260417994|gb|EEX11253.1| NADH-quinone oxidoreductase subunit j [Silicibacter lacuscaerulensis ITI-1157] Length = 200 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM---VFSAEG 119 VGAV V FLF++MMLD+D + R + IG++ V A +A Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGAWESAQGAAAN 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +N E +G +LY QY +++G ILL++MIGAIVL LRHR+D+KRQD+ Q Sbjct: 121 LAQPIPADRHNTEALGLILYDQYFLLFQLAGLILLVAMIGAIVLTLRHRKDVKRQDVIAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPAQALELKDVKPGQGL 200 >gi|163732048|ref|ZP_02139494.1| NADH dehydrogenase subunit J [Roseobacter litoralis Och 149] gi|161394346|gb|EDQ18669.1| NADH dehydrogenase subunit J [Roseobacter litoralis Och 149] Length = 200 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ I V RNP++SV LI AF++AAGLF+LLGAEFVAM+ ++VY Sbjct: 1 MTVFAFYLFAISVIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVLLGAEFVAMLLIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLD+D + + + IG++ A +A E Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMSKYLPLALLIGVVLLMQFAIAFGAWESNAAAEGM 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 +N E +G +LY QY ++SG ILL++MIGAIVL LRHR D+KRQD+ Q Sbjct: 121 RAQVTPVDRHNTEALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRSDVKRQDVVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VKSG+G+ Sbjct: 181 MMRDPAKAMELKDVKSGQGL 200 >gi|84686446|ref|ZP_01014340.1| NADH dehydrogenase subunit J [Maritimibacter alkaliphilus HTCC2654] gi|84665629|gb|EAQ12105.1| NADH dehydrogenase subunit J [Rhodobacterales bacterium HTCC2654] Length = 204 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 76/204 (37%), Positives = 120/204 (58%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY F+ ++ V RNP++SV LI AF+ +AGLF++LGAEF+AM+ ++ Sbjct: 1 MTVADFAFYAFAVTTLVGGLFTVLARNPVHSVLWLIMAFIGSAGLFVVLGAEFLAMLLMI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLD+D + + + I ++ + F+ E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAGMAKYMPLALLIAVVLLMQMGMIYGTWQFADGAE 120 Query: 121 LSRLVFKGN-----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +R + N +G+++Y Y ++SG +LL++MIGAIVL LRHR+DIKRQD Sbjct: 121 AARRAVTPDMTEVENTAALGQLIYDDYFLLFQLSGLVLLVAMIGAIVLTLRHRKDIKRQD 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q+ +P ++ +V VK G+G+ Sbjct: 181 VLAQMYRDPAKALELVDVKPGQGL 204 >gi|260574772|ref|ZP_05842775.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodobacter sp. SW2] gi|259023189|gb|EEW26482.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodobacter sp. SW2] Length = 204 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 80/204 (39%), Positives = 122/204 (59%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYLF+F+ + S+ LV RNP++SV LI AF++ AGLF+LLGAEFVAM+ ++ Sbjct: 1 MNVADYAFYLFAFVTLTSALLVTVSRNPVHSVLWLILAFISTAGLFVLLGAEFVAMLLMI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA-----ELIVCASNFMVF 115 VYVGAV V FLF++MMLDID + R G++ L V Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFAALRGKMTRYLPIGLAFGVVLLLEFSMALFVWVQADGAV 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ++ + N +G ++Y +Y Y + +G ILL++MIGAI+L LRHR+DIKRQ+ Sbjct: 121 AMRQAVAPDPGQVENTRALGLLIYDKYIYLFQAAGLILLVAMIGAILLTLRHRKDIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q+ +P ++ + +K G+G+ Sbjct: 181 VLHQMWRDPAKTMEIKDIKPGQGL 204 >gi|103486786|ref|YP_616347.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingopyxis alaskensis RB2256] gi|98976863|gb|ABF53014.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingopyxis alaskensis RB2256] Length = 203 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 130/200 (65%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + FYLF+ + I S+ +V+ RNP++SV LI AF NAAGL LL GAEF+AM+ ++VY Sbjct: 2 IQLIAFYLFATIVIASAAMVIFARNPVHSVMWLILAFFNAAGLMLLAGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--G 119 VGAV V FLF++MMLDID E+ + LG+ ILAAELI + + Sbjct: 62 VGAVAVLFLFVVMMLDIDFAELRAGFVRYLPLGALVAIILAAELIFAVGAWSAGGVDLAA 121 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +V +N++ IG++LYT+Y + E +G +LL++MIGAIVL R R ++ Q+IS+Q Sbjct: 122 RTAPVVSDKSNIQQIGELLYTKYIFLFEAAGIVLLVAMIGAIVLTHRQRGGVRAQNISQQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + P+++ +V +G+G+ Sbjct: 182 VRRRPEDATRLVDPGTGQGV 201 >gi|167585981|ref|ZP_02378369.1| NADH dehydrogenase subunit J [Burkholderia ubonensis Bu] Length = 217 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 121/205 (59%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +R F + + +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDF----LRRDFKKFVPMATVVGAIIVVETALVLWHGYGA 116 Query: 121 LSRLV--------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 V N IGKV+YT Y + EI+G +LL+++I A+ L R +D K Sbjct: 117 TEAPVRAMAQGAMATWPNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTERKGKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ +S Q++ D+ + +VK+++ K Sbjct: 177 RQRVSDQVKVRRDDRVRLVKMEADK 201 >gi|149202656|ref|ZP_01879628.1| NADH dehydrogenase subunit J [Roseovarius sp. TM1035] gi|149143938|gb|EDM31972.1| NADH dehydrogenase subunit J [Roseovarius sp. TM1035] Length = 202 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 80/202 (39%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FYLF+ + + V RNP++SV LI +F++AAGLF+LLGAEFVAM+ ++ Sbjct: 1 MTFAAMAFYLFAVSLLTGGLMTVISRNPVHSVLWLILSFISAAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLD+D + + + IG++ A + E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMAKYMPLALLIGVILLMQFGLAFGNWEMADGAE 120 Query: 121 LSR---LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 +R N +G +LY Y ++SG ILL++MIGAIVL LRHR D+KRQD+ Sbjct: 121 AARRAVTPEGVENTAALGLLLYDTYFILFQLSGLILLVAMIGAIVLTLRHRTDVKRQDVL 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 181 AQMYRDPAKAMELRDVKPGQGL 202 >gi|86749701|ref|YP_486197.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris HaA2] gi|86572729|gb|ABD07286.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] Length = 212 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 128/202 (63%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M LFFYL++ AI ++ +VV RNP++S LI FVNAAG+F+L+GAEF+AMI +V Sbjct: 1 MSMPVLFFYLYAGAAIAAAVMVVFARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VYVGAV V FLF+IMMLD+D IG + ++ + V + Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFSRLREGFLEYLPFGLLIGFIFLAELLLLAGGWVITPTVT 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + +N E +G VLYT+Y + +ISG ILL++MIGAIVL LRH++ +KRQ+IS Sbjct: 121 KTITAPIPTDVSNTEALGLVLYTRYIHYFQISGVILLVAMIGAIVLTLRHKKSVKRQNIS 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 +Q + + ++ + KVK G+G+ Sbjct: 181 EQNARSKETAMAIRKVKPGQGL 202 >gi|114765007|ref|ZP_01444154.1| NADH dehydrogenase subunit J [Pelagibaca bermudensis HTCC2601] gi|114542554|gb|EAU45579.1| NADH dehydrogenase subunit J [Roseovarius sp. HTCC2601] Length = 202 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ I+ V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MTVFAFYLFALCTIVGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-----LAAELIVCASNFMVFSA 117 VGAV V FLF++MMLD+D + + IG+ L V + + S Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELRAGMAKYMPLALLIGVILLMQLGMAFGVWEVSEIAASQ 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + L + N +G +LY +Y +++G ILL++MIGAIVL LRHR+D+KRQ++ Sbjct: 121 LSAPTPLATETQNTAALGLLLYDRYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQNVL 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 181 AQMYRDPKKAMELRDVKPGQGL 202 >gi|163738811|ref|ZP_02146225.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis BS107] gi|161388139|gb|EDQ12494.1| NADH dehydrogenase subunit J [Phaeobacter gallaeciensis BS107] Length = 200 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121 VGAV V FLF++MMLD+D + R + IG++ V A + Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGAWETAPAAATQ 120 Query: 122 --SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +N E +G ++Y QY ++SG ILL++MIGAIVL LRHR+D+KRQD+ Q Sbjct: 121 LAQPIPADQHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPATAMELKDVKPGQGL 200 >gi|170696390|ref|ZP_02887519.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia graminis C4D1M] gi|170138718|gb|EDT06917.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia graminis C4D1M] Length = 228 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 124/207 (59%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V +R + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDVLRKDFRRFVPMATVVG----AIIVLETALILWHGYGA 116 Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S +V +N IGKV+YT Y + E++G +LL+++I AI L H++D Sbjct: 117 TSTVVPDTTAAAGGMGDWSNTRLIGKVIYTDYIFAFEVAGLVLLVAIIAAIALTTSHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ IS Q++ + + +VK+ S K Sbjct: 177 SKRQKISDQVKVRAQDRVRVVKMPSEK 203 >gi|218200865|gb|EEC83292.1| hypothetical protein OsI_28652 [Oryza sativa Indica Group] Length = 673 Score = 180 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 80/205 (39%), Positives = 125/205 (60%), Gaps = 8/205 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+T RNP+++V LI AF AA ++LLL AEF+A+ ++ Sbjct: 452 MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALVL 511 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113 VY+GAV+V FLF++MMLDI I+ R F + FIG L A + Sbjct: 512 VYLGAVMVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEP 571 Query: 114 -VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +A + + V + +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR R+D K Sbjct: 572 KAVAAMVDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTK 631 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 +S+Q+ + + +VKV + + Sbjct: 632 VTKVSEQVRVRAADRVALVKVAATQ 656 >gi|86137585|ref|ZP_01056162.1| NADH dehydrogenase I, J subunit [Roseobacter sp. MED193] gi|85825920|gb|EAQ46118.1| NADH dehydrogenase I, J subunit [Roseobacter sp. MED193] Length = 200 Score = 180 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 123/200 (61%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM--VFSAEGE 120 VGAV V FLF++MMLD+D + + + IG++ V A A + Sbjct: 61 VGAVAVLFLFVVMMLDVDFAALKAEMAQYMPLALLIGLVILMQFVMAYGSWESAHGAAAQ 120 Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L++ + + +N E +G ++Y QY ++SG ILL++MIGAI L LRHR+D+KRQD+ Q Sbjct: 121 LAQPIPEDRHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAITLTLRHRKDVKRQDVMLQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + +K G+G+ Sbjct: 181 MSRDPAKAMELKDIKPGQGL 200 >gi|260428617|ref|ZP_05782596.1| NADH-quinone oxidoreductase subunit j [Citreicella sp. SE45] gi|260423109|gb|EEX16360.1| NADH-quinone oxidoreductase subunit j [Citreicella sp. SE45] Length = 200 Score = 180 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 78/200 (39%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLFS I+ V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MTVFAFYLFSLCTILGGLFTVISRNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEG 119 VGAV V FLF++MMLD+D + + IG++ + A +A Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELRAGMAKYMPLALLIGVVILMQLGMAFGAWETSDLAAGQ 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + N +G ++Y +Y +++G ILL++MIGAIVL LRHR+D+KRQ++ Q Sbjct: 121 LSAPVPGDMQNTAALGVLIYDRYFLAFQLAGLILLVAMIGAIVLTLRHRQDVKRQNVLAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MWRDPAKAMELKDVKPGQGL 200 >gi|254469512|ref|ZP_05082917.1| NADH-quinone oxidoreductase chain j [Pseudovibrio sp. JE062] gi|211961347|gb|EEA96542.1| NADH-quinone oxidoreductase chain j [Pseudovibrio sp. JE062] Length = 204 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 92/204 (45%), Positives = 144/204 (70%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+Q+LFFYLF+ +A+ S+F+V+ RNP++SV LI F NAAGLF+L+GAE++AM+ +V Sbjct: 1 MVLQALFFYLFAALAVASAFMVIASRNPVHSVLFLILCFFNAAGLFVLIGAEYLAMLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE- 118 VYVGAV+V FLF++MMLD+D E+ + + +G+ IL EL++ S + + Sbjct: 61 VYVGAVMVLFLFVVMMLDVDFAEMRQGFLQYLPIGALIGVILLVELLMVVSGWYIAPGML 120 Query: 119 ---GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + V + N+ IG++LYT+Y Y +++G +LL++MIGAIVL LRH+ ++RQ+ Sbjct: 121 GEGSAPTPPVEQTQNIAAIGELLYTRYIYWFQVAGLVLLVAMIGAIVLTLRHKPGVRRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 IS+Q+ P+ +I +VKV+SGKG+ Sbjct: 181 ISEQVARRPETAIEVVKVESGKGL 204 >gi|83746306|ref|ZP_00943359.1| NADH-quinone oxidoreductase chain J [Ralstonia solanacearum UW551] gi|207742744|ref|YP_002259136.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia solanacearum IPO1609] gi|300703651|ref|YP_003745253.1| NADH-quinone oxidoreductase subunit j [Ralstonia solanacearum CFBP2957] gi|83727056|gb|EAP74181.1| NADH-quinone oxidoreductase chain J [Ralstonia solanacearum UW551] gi|206594138|emb|CAQ61065.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia solanacearum IPO1609] gi|299071314|emb|CBJ42632.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum CFBP2957] Length = 210 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 116/199 (58%), Gaps = 2/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MM+DIDIE F+G I+ +V FM S Sbjct: 61 VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQP 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + G N + +GK++YT Y Y EI+G +LLL+++ A+ L R R+D K Q ++ Sbjct: 121 VQELPKALSGPNTQALGKLIYTDYLYAFEIAGAVLLLAIVAAVALTARRRKDTKAQKVAD 180 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ + + +V + + K Sbjct: 181 QVRVQRKDRVRLVSMPAEK 199 >gi|110633385|ref|YP_673593.1| NADH dehydrogenase subunit J [Mesorhizobium sp. BNC1] gi|110284369|gb|ABG62428.1| NADH dehydrogenase subunit J [Chelativorans sp. BNC1] Length = 206 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 86/202 (42%), Positives = 138/202 (68%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++++FFYLF+F+ + ++F+V++ RNP++SV LI F NAA LFLL GAEF+AMI L+VY Sbjct: 5 LEAIFFYLFAFIGVAAAFMVISARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLIVY 64 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VFSA 117 VGAV V FLF++MMLD+D E+ + + +G+ ILA ELIV + + + Sbjct: 65 VGAVAVLFLFVVMMLDVDFAELKQGALQYAPVGAIVGIILAVELIVVLGGYAFTPEIAAE 124 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + + +N +G +LYT Y Y +++G ILL++M+GAIVL LRH+ +++RQ+I+ Sbjct: 125 IAQPAPAIAERHNTAALGDILYTNYFYFFQVAGLILLVAMVGAIVLTLRHKPNVRRQNIA 184 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ P +I + KV++G+GI Sbjct: 185 AQVARTPATAIEIRKVETGEGI 206 >gi|227821628|ref|YP_002825598.1| NADH dehydrogenase subunit J [Sinorhizobium fredii NGR234] gi|227340627|gb|ACP24845.1| NADH dehydrogenase subunit J [Sinorhizobium fredii NGR234] Length = 204 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 96/204 (47%), Positives = 129/204 (63%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q LFFYLF+F+A+ S+F+V+ +NP+YSV LI F NAAGLFLL GAEF+AMI LV Sbjct: 1 MGLQVLFFYLFAFIAVASAFMVIAAKNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VYVGAV V FLF++MMLDID IG++ A ++ FS E Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFAELRAGVLEYAPVGALIGLILAAELIIVVGGSTFSPEIA 120 Query: 119 ---GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 V + N +G VLYT Y Y +I+G +LL++MIGAIVL LRHR +IKRQ Sbjct: 121 KGIAMPIPAVTERTNTAALGDVLYTHYIYFFQIAGLVLLVAMIGAIVLTLRHRENIKRQS 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I +Q+ +P+ ++ +V VK G+G+ Sbjct: 181 IPRQVARSPETAVEVVTVKPGQGL 204 >gi|310816704|ref|YP_003964668.1| NADH dehydrogenase subunit J [Ketogulonicigenium vulgare Y25] gi|308755439|gb|ADO43368.1| NADH dehydrogenase subunit J [Ketogulonicigenium vulgare Y25] Length = 204 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 123/198 (62%), Gaps = 3/198 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY+F+ +I + VT RNP+++V LI AF++AAGLF+L GAEFVAMI ++VYVG Sbjct: 2 AFIFYVFAAGTLIGGLMTVTARNPVHAVLWLISAFLSAAGLFVLQGAEFVAMILMIVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE--L 121 AV V FLF++MMLD+D + + IG +LAA+L++ ++ Sbjct: 62 AVAVLFLFVVMMLDVDFAALRAKSRAFVPVGVVIGAVLAAQLVMVFGDWSAAPGASARLA 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + +N + +LY +Y +++G +LL++MIGAIVL +RHR+D+KRQ++ +Q+ Sbjct: 122 TPTPAGVDNTHALALILYDRYFIAFQLAGLVLLVAMIGAIVLTMRHRQDVKRQNVLEQMS 181 Query: 182 SNPDNSIVMVKVKSGKGI 199 +P +I M SG+G+ Sbjct: 182 RDPAKAIRMANPGSGQGL 199 >gi|207723882|ref|YP_002254280.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia solanacearum MolK2] gi|206589087|emb|CAQ36049.1| transmembrane nadh dehydrogenaseI(chain j) protein [Ralstonia solanacearum MolK2] Length = 210 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 116/199 (58%), Gaps = 2/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MM+D+DIE F+G I+ +V FM S Sbjct: 61 VYVGAVMVLFLFVVMMIDVDIEHLRRDFWTYVPMGAFVGAIIIMEMAVVLTKAFMGRSQP 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + G N + +GK++YT Y Y EI+G +LLL+++ A+ L R R+D K Q ++ Sbjct: 121 VQELPKALSGPNTQALGKLIYTDYLYAFEIAGAVLLLAIVAAVALTARRRKDTKAQKVAD 180 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ + + +V + + K Sbjct: 181 QVRVQRKDRVRLVSMPAEK 199 >gi|167836058|ref|ZP_02462941.1| NADH dehydrogenase subunit J [Burkholderia thailandensis MSMB43] Length = 218 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+V +R + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDVLRRDFRRFVPMATVVG----AIIVVETALILWRGYGA 116 Query: 121 LSRLVFK--------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 V N + IGKV+YT Y + EI+G +LL+++I A+ L + +D K Sbjct: 117 TGSPVHDMAAGAAAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ +S+Q++ ++ + +VK+++ K Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201 >gi|330994063|ref|ZP_08317993.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter sp. SXCC-1] gi|329759009|gb|EGG75523.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter sp. SXCC-1] Length = 257 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 80/201 (39%), Positives = 126/201 (62%), Gaps = 4/201 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+F+ + ++S+ +VV RNP++SV LI AF NAAGLFL+ GAEF+AM ++VY Sbjct: 2 MTQIVFYVFAAVLVLSATMVVCARNPVHSVLFLILAFFNAAGLFLIAGAEFLAMTLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD++ + E ++ +G G+L EL++ + + S ++ Sbjct: 62 VGAVAVLFLFVVMMLDVNFTRMREGVQRYAPIGGLVGGVLLVELVMAFARWRSASNIDQI 121 Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + LV N +G V+YT Y + + +LL++MIGAIVL LR R +RQ+I + Sbjct: 122 AHLVPSSPTRTNTAALGDVIYTHYIFLFQSCALVLLVAMIGAIVLTLRDRPSGRRQNIDR 181 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q + P +S+ M++V G G+ Sbjct: 182 QHDRVPHDSLEMLQVPLGAGV 202 >gi|85703192|ref|ZP_01034296.1| NADH dehydrogenase subunit J [Roseovarius sp. 217] gi|85672120|gb|EAQ26977.1| NADH dehydrogenase subunit J [Roseovarius sp. 217] Length = 202 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 82/202 (40%), Positives = 122/202 (60%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FYLF+ +I V RNP++SV LI +F++AAGLF+LLGAEFVAM+ ++ Sbjct: 1 MTIAAMAFYLFAVSLLIGGLFTVISRNPVHSVLWLILSFISAAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D + + + IG IL + + N+ + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMAKYMPLALLIGVILLMQFGLVFGNWQMADGAE 120 Query: 120 ELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 R V N +G +LY Y +++G ILL++MIGAIVL LRHR D+KRQD+ Sbjct: 121 AARRSVTPDGVENTAALGLLLYDTYFILFQLAGLILLVAMIGAIVLTLRHRTDVKRQDVL 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 181 AQMYRDPAKAMELRDVKPGQGL 202 >gi|91782621|ref|YP_557827.1| NADH dehydrogenase subunit J [Burkholderia xenovorans LB400] gi|296160638|ref|ZP_06843453.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. Ch1-1] gi|91686575|gb|ABE29775.1| NADH dehydrogenase subunit J [Burkholderia xenovorans LB400] gi|295889164|gb|EFG68967.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. Ch1-1] Length = 229 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 126/207 (60%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDVLRKDFKRFVPMATLVG----AIIVIETALILWHGYGA 116 Query: 121 LSRL----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +N IGK++YT Y + E++G +LL+++I AI L H++D Sbjct: 117 TATALRDTTAAANGMGDWSNTRLIGKIIYTDYIFAFEVAGLVLLVAIIAAIALTTSHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ++S+Q++ + + +VK+KS K Sbjct: 177 SKRQNVSEQVKVRAQDRVRVVKMKSEK 203 >gi|149927550|ref|ZP_01915804.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Limnobacter sp. MED105] gi|149823823|gb|EDM83049.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Limnobacter sp. MED105] Length = 210 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 112/195 (57%), Gaps = 2/195 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FFY+F+ + + ++ V+T N +++ L+ +F +A+ L++LL AEF+A+ ++ Sbjct: 1 MDAITGFFYVFAAILVFAAVRVITASNAVHAALYLVLSFFSASALWMLLEAEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MM+D++++ + + +G L A + + E Sbjct: 61 VYVGAVMVLFLFVVMMVDVNMDKVRAGFWKNLPVAAIVGSLIAFQMSVVLLRGFWDPNLE 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 NN E +GK+LYT+Y YP E++ ILL++M+ AI L LR R+D K Q S Q+ Sbjct: 121 TPEQAA--NNTEALGKLLYTEYLYPFEVAALILLVAMVAAIALTLRKRKDTKGQVPSDQV 178 Query: 181 ESNPDNSIVMVKVKS 195 + + +V + + Sbjct: 179 RVKSTDRVKLVSMPA 193 >gi|94309881|ref|YP_583091.1| NADH dehydrogenase subunit J [Cupriavidus metallidurans CH34] gi|93353733|gb|ABF07822.1| NADH dehydrogenase chain J [Cupriavidus metallidurans CH34] Length = 225 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 74/197 (37%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+F+ + ++S+ V+T +NP++S L+ AF AA ++++L AEF+A++ L+ Sbjct: 13 MELTTTIFYVFALVLVLSALKVITAKNPVHSALFLVLAFFTAAAIWMILKAEFLAILLLL 72 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFM-VFSA 117 VYVGAV+V FLF++MM+DIDIE + IG I+A IV NF+ +A Sbjct: 73 VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMASIIGALIIAEMAIVLVRNFIGTTNA 132 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 +N +GK++YT Y Y E++G ILL+++I A+ L LR R+D+K QD+ Sbjct: 133 VLPPGAQDPNYSNTAALGKLIYTDYIYAFEVAGIILLVAIIAAVALTLRRRKDVKAQDVG 192 Query: 178 KQLESNPDNSIVMVKVK 194 QL D + +VK+ Sbjct: 193 AQLRVRRDERVRLVKLP 209 >gi|126740390|ref|ZP_01756078.1| NADH dehydrogenase subunit J [Roseobacter sp. SK209-2-6] gi|126718526|gb|EBA15240.1| NADH dehydrogenase subunit J [Roseobacter sp. SK209-2-6] Length = 200 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 80/200 (40%), Positives = 118/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ AI V R P++SV LI AF+++AGLF+LLGAEFVAM+ ++VY Sbjct: 1 MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFISSAGLFVLLGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLD+D + + + IG++ V A + Sbjct: 61 VGAVAVLFLFVVMMLDVDFAALKAEMAQYMPLALLIGLVILMQFVMAYGSWESAHGASEL 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 +N E +G ++Y QY ++SG ILL++MIGAI+L LRHR+D+KRQD+ Q Sbjct: 121 LAQPTPADKHNTEALGLIIYDQYFLLFQLSGLILLVAMIGAIMLTLRHRQDVKRQDVLAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MYRDPAKAMELKDVKPGQGL 200 >gi|316933902|ref|YP_004108884.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rhodopseudomonas palustris DX-1] gi|315601616|gb|ADU44151.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodopseudomonas palustris DX-1] Length = 212 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 85/202 (42%), Positives = 129/202 (63%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M LFFYL++ +AI ++ +VV RNP++S LI FVNAAG+F+L+GAEF+AMI +V Sbjct: 1 MSMPVLFFYLYAGVAIAAAVMVVFARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VYVGAV V FLF+IMMLD+D IG++ ++ + V S Sbjct: 61 VYVGAVAVLFLFVIMMLDVDYSELREGFLEYLPFGLLIGVIFLAELLLLAGGWVISPTVT 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + +N E +G VLYT+Y + ++SG ILL++M+GAIVL LRH++ +KRQDI+ Sbjct: 121 KTVTAPIPADVSNTEALGLVLYTRYIHYFQVSGMILLVAMVGAIVLTLRHKKKVKRQDIA 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q + + ++ + VK+G+G+ Sbjct: 181 AQNARSKETAMAIRHVKTGQGL 202 >gi|307730331|ref|YP_003907555.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1003] gi|307584866|gb|ADN58264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1003] Length = 229 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 125/207 (60%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDVLRKDFKRFVPMATLVG----AIIVLETALILWHGYGA 116 Query: 121 LSRLV----------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S +V +N IGKV+YT Y + EI+G +LL+++I AI L H++D Sbjct: 117 TSTVVRDTTAAASGMGDWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIALTTSHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ IS+Q++ + + +VK+ S K Sbjct: 177 SKRQKISQQVKVRAQDRVRVVKMPSEK 203 >gi|77463083|ref|YP_352587.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides 2.4.1] gi|126461955|ref|YP_001043069.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides ATCC 17029] gi|332557956|ref|ZP_08412278.1| NADH:ubiquinone oxidoreductase subunit J [Rhodobacter sphaeroides WS8N] gi|77387501|gb|ABA78686.1| NADH dehydrogenase I-ubiquinone oxidoreductase subunit 6 (chain J) [Rhodobacter sphaeroides 2.4.1] gi|126103619|gb|ABN76297.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029] gi|332275668|gb|EGJ20983.1| NADH:ubiquinone oxidoreductase subunit J [Rhodobacter sphaeroides WS8N] Length = 204 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 75/204 (36%), Positives = 126/204 (61%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY F+ A+ ++ +VVT RN +++V LI F+++AG+F+LLGAEFVAM+ ++ Sbjct: 1 MSVADVAFYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D E + R + +GI + +L + ++ Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFEALKSEVVRYMPVAALMGIVILLQLSMGIGAWVTADGAP 120 Query: 120 ELSRLVFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + V N +G ++Y +Y Y + +G ILL++M+GAI+L LR RRD+KRQ+ Sbjct: 121 AMRQAVTPDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q+ +P ++ + VK G+G+ Sbjct: 181 VLAQMWRDPAKAMELKDVKPGQGL 204 >gi|89070161|ref|ZP_01157490.1| NADH dehydrogenase I, J subunit [Oceanicola granulosus HTCC2516] gi|89044278|gb|EAR50424.1| NADH dehydrogenase I, J subunit [Oceanicola granulosus HTCC2516] Length = 196 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 82/196 (41%), Positives = 122/196 (62%), Gaps = 3/196 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY+F+ I V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++VYVGAV Sbjct: 1 MFYVFAVTTIAGGLFTVVSRNPVHSVLWLILAFLSSAGLFILLGAEFVAMLLVIVYVGAV 60 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EGELSR 123 V FLF++MMLD+D + R + IGI+ + A F A E + Sbjct: 61 AVLFLFVVMMLDVDFAALKAEMARYMPLALLIGIVILMQLALAFGVWTFGAGVDERLAAP 120 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 +V +N E +G +LY +Y +++G ILL++MIGAIVL LRHR D+KRQ++ +Q+ + Sbjct: 121 VVGGVHNTEGLGFLLYDRYILLFQLAGLILLVAMIGAIVLTLRHREDVKRQNVLEQMYRD 180 Query: 184 PDNSIVMVKVKSGKGI 199 P ++ + VK G+G+ Sbjct: 181 PATAMELRDVKPGQGL 196 >gi|325983280|ref|YP_004295682.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas sp. AL212] gi|325532799|gb|ADZ27520.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas sp. AL212] Length = 201 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 71/199 (35%), Positives = 116/199 (58%), Gaps = 2/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ Q + FY FS + I+S+ V+ VRNP+ S L+ +FV AGL+LLL AEF+A+ ++ Sbjct: 1 MIFQDILFYSFSAILIVSALGVIIVRNPVNSALLLVLSFVTCAGLWLLLEAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118 VYVGAV+V FLF++MMLDI+++ + F I ++ I V + + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDRLREGFWKWFPFGAMIALVIVVEISMVLMGKYFGYEEM 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 +N + +G+++YT+Y Y E++ +LL++MI AI L LRHR D K + K Sbjct: 121 PIPEPKGADYSNTKELGRLIYTEYVYAFELAAVLLLVAMIAAIALTLRHREDKKSTNPFK 180 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q++ ++ I +V + + K Sbjct: 181 QVKVKKEDRIRIVSMSAEK 199 >gi|253996964|ref|YP_003049028.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera mobilis JLW8] gi|253983643|gb|ACT48501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera mobilis JLW8] Length = 226 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 68/196 (34%), Positives = 112/196 (57%), Gaps = 2/196 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 Q + FY + + +I+ V+T RNP+Y+ L+ AF AAG++LLL AEF+A+ ++VY Sbjct: 8 FQDIVFYTLATILLIAGLRVITTRNPVYAALYLVLAFFTAAGIWLLLEAEFLAIALVLVY 67 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV+V FLF++MMLDI+++ + + +G L A +V F + + Sbjct: 68 VGAVMVLFLFVVMMLDINLDKLREGFWKALPVALPVGGLMAVEMVMVVGARNFGVDVVAA 127 Query: 123 RL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 +N +G+VLYT Y E++ +LL++++ AI L LR RRD K D +KQ+ Sbjct: 128 PPAHPADYSNTAELGRVLYTDYLLSFELASVVLLVAIVAAIALTLRDRRDSKSMDPAKQV 187 Query: 181 ESNPDNSIVMVKVKSG 196 + I +VK+++ Sbjct: 188 LVKKADRIRIVKMEAE 203 >gi|85717020|ref|ZP_01047982.1| NADH dehydrogenase subunit J [Nitrobacter sp. Nb-311A] gi|85696144|gb|EAQ34040.1| NADH dehydrogenase subunit J [Nitrobacter sp. Nb-311A] Length = 211 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 123/196 (62%), Gaps = 3/196 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FFYLF+ + + S+ +V++ RNP++SV LI AFVNAAGLF+LLGAEF+AMI +VVYVGAV Sbjct: 6 FFYLFAGVCVASAVMVISSRNPVHSVLFLILAFVNAAGLFILLGAEFLAMILIVVYVGAV 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELSR 123 V FLF+IMMLD+D I + L+V + + Sbjct: 66 AVLFLFVIMMLDVDFAELREGFLEYLPFGLVIAAIFLLELLLVVGGWTLNPTVTKSITAA 125 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + +N E +G VLYT+Y + +++G +LL++MIGAIVL LRHR +KRQDI+ Q Sbjct: 126 IPGDVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHRVSVKRQDINVQNART 185 Query: 184 PDNSIVMVKVKSGKGI 199 P+ ++ + +V SG+G+ Sbjct: 186 PEMAMSVRQVASGQGL 201 >gi|126729569|ref|ZP_01745382.1| NADH dehydrogenase subunit J [Sagittula stellata E-37] gi|126709688|gb|EBA08741.1| NADH dehydrogenase subunit J [Sagittula stellata E-37] Length = 200 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 84/200 (42%), Positives = 124/200 (62%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FYLF+ I V RNP++SV LI AF+++AGLF+L+GAEFVAM+ ++VY Sbjct: 1 MMAFAFYLFALGVIAGGLFTVVSRNPVHSVLWLILAFLSSAGLFVLMGAEFVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGE 120 VGAV V FLF++MMLD+D + R + IG++ + A S A G+ Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQLAMAFGVWEASDLAAGQ 120 Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 LS +G N +G +LY +Y ++SG ILL++MIGAIVL LRHR+D+KRQD+ Q Sbjct: 121 LSAPAPEGIENTAALGMILYDKYFLLFQLSGLILLVAMIGAIVLTLRHRQDVKRQDVLAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + V+ G+G+ Sbjct: 181 MYRDPAKAMELRDVRPGQGL 200 >gi|154253656|ref|YP_001414480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Parvibaculum lavamentivorans DS-1] gi|154157606|gb|ABS64823.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Parvibaculum lavamentivorans DS-1] Length = 204 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 80/204 (39%), Positives = 125/204 (61%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ FYLF+ + + + F+V++ RNP++SV LI AF NAA LF+LLGAEF+A I ++ Sbjct: 1 MIGTAIAFYLFAGITVAAGFMVISARNPVHSVLFLILAFFNAAALFVLLGAEFIAFILVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115 VYVGAV V FLF++MMLD+D + IGI+ ++ V Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVELREGFLQYLPIGALIGIILLIELLLVLGGWVIAPGAG 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 S + ++ +N +G+V+YTQY Y + +G ILL++M+GAIVL LRH+ ++KRQ Sbjct: 121 SVAASPTPILTDVDNTRALGQVIYTQYVYLFQAAGLILLVAMVGAIVLTLRHKTNVKRQV 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 IS Q+ + + + KV+ G+G+ Sbjct: 181 ISDQVARTRETGVELKKVEPGQGL 204 >gi|296536147|ref|ZP_06898275.1| NADH-quinone oxidoreductase subunit J [Roseomonas cervicalis ATCC 49957] gi|296263518|gb|EFH10015.1| NADH-quinone oxidoreductase subunit J [Roseomonas cervicalis ATCC 49957] Length = 241 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 7/202 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + +L FY+F+ + I S+ +VVT RNP++SV LI AF NAA LFL+ GAEF+AMI ++VY Sbjct: 2 IAALAFYVFAAILIASAVMVVTSRNPVHSVLFLILAFFNAAALFLIAGAEFLAMILVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLFI+MMLDID + E ++ +G+ IL EL+ ++ L Sbjct: 62 VGAVAVLFLFIVMMLDIDFARLREGFQRYAPIGAVIGAILFLELLFVFGSWQFAPDAAAL 121 Query: 122 ---SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDIS 177 N E +G ++YT Y + +++G ILL++MIGAIVL LR + + KRQDI+ Sbjct: 122 RLNPAPDAGVTNTEALGLLVYTDYVFLFQLAGLILLVAMIGAIVLTLRDKPANSKRQDIA 181 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ ++ M +V S G+ Sbjct: 182 VQVAR--GEAVTMKQVPSRAGL 201 >gi|323525445|ref|YP_004227598.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1001] gi|323382447|gb|ADX54538.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1001] Length = 227 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 125/207 (60%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDVLRKDFKRFVPMATVVG----AIIVLETALILWHGYGA 116 Query: 121 LSRLV----------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S +V +N IGKV+YT Y + EI+G +LL+++I AI L H++D Sbjct: 117 TSTVVRDTTAAASGMGDWSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAIALTTSHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ IS+Q++ + + +VK+ S K Sbjct: 177 SKRQTISQQVKVRAQDRVRVVKMPSEK 203 >gi|182679343|ref|YP_001833489.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beijerinckia indica subsp. indica ATCC 9039] gi|182635226|gb|ACB96000.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beijerinckia indica subsp. indica ATCC 9039] Length = 202 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q+ FF LFS + I+S+ +V+ RNP++SV LI AF NAAGLF++LGAEF+AMI +V Sbjct: 1 MDVQAFFFTLFSTVMIVSAIMVIAARNPVHSVLFLILAFCNAAGLFVMLGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF---SA 117 VYVGA+ V FLF++MMLD+D + + IG + + V S Sbjct: 61 VYVGAIAVLFLFVVMMLDVDFTEFKQGFLQYLPVGALIGAVVLVELFLVLGSWVAGSGSV 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + +N +G+VLYTQY Y + + +LL +MIGAIVL LRH+ +KRQDI+ Sbjct: 121 TAIATPVPPGMSNTMALGRVLYTQYLYLFQAAAMVLLTAMIGAIVLTLRHKVGVKRQDIA 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q P ++I + KV SG+G+ Sbjct: 181 AQNARTPVDAIEIRKVASGQGL 202 >gi|241663475|ref|YP_002981835.1| NADH dehydrogenase subunit J [Ralstonia pickettii 12D] gi|309781861|ref|ZP_07676594.1| NADH dehydrogenase (ubiquinone), J subunit [Ralstonia sp. 5_7_47FAA] gi|240865502|gb|ACS63163.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ralstonia pickettii 12D] gi|308919502|gb|EFP65166.1| NADH dehydrogenase (ubiquinone), J subunit [Ralstonia sp. 5_7_47FAA] Length = 210 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 118/199 (59%), Gaps = 2/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY F+ + ++++ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFALVLVLAALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118 VYVGAV+V FLF++MM+DIDIE + F+G++ +V FM Sbjct: 61 VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMAAFVGVVIILEMAVVLTKTFMGRVQP 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + F G N + +GK++YT Y Y E++G +LLL+++ A+ L R R+D K Q++S Sbjct: 121 VQELPKGFNGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDTKAQNVSD 180 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ + + +V + + K Sbjct: 181 QIRVKRKDRVRLVSMPAEK 199 >gi|159043873|ref|YP_001532667.1| NADH dehydrogenase subunit J [Dinoroseobacter shibae DFL 12] gi|157911633|gb|ABV93066.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dinoroseobacter shibae DFL 12] Length = 204 Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 80/204 (39%), Positives = 121/204 (59%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FYLF+ + + V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++ Sbjct: 1 MTVADITFYLFAITVVTAGLFVTLARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VYVGAV V FLF++MMLD+D + + IGI+ + FS E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMASYIPMAALIGIVLLMQLAMVFGNWTFSEEAL 120 Query: 119 ---GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 G ++ + + N +G ++Y Y + SG ILL++MIGAIVL LRHR IKRQ+ Sbjct: 121 AQRGAVTPDLNEVQNTAALGLLIYDDYILLFQASGLILLVAMIGAIVLTLRHRVGIKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q++ +P ++ + VK G+G+ Sbjct: 181 VVAQMQRDPAKAMELKDVKPGQGL 204 >gi|56478185|ref|YP_159774.1| NADH dehydrogenase I, chain J [Aromatoleum aromaticum EbN1] gi|56314228|emb|CAI08873.1| NADH dehydrogenase I, chain J [Aromatoleum aromaticum EbN1] Length = 200 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 61/199 (30%), Positives = 113/199 (56%), Gaps = 2/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + V+T RNP+++ L+ +F +A G++LLL AEF+A++ ++ Sbjct: 1 MDFKTFVFYVLAVIMVFAGLRVITARNPVHAALFLVLSFFSAGGIWLLLAAEFLAVVLVM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118 VYVGAV+V FLF++MMLDI+++ IG+L +V + A Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDRLRQGFWSYLPVGALIGVLLVVEMALVLGGRYFGLEAM 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 E +N +G++LYT Y YP E++ +LL++MI A+ L LR R+ ++ + S+ Sbjct: 121 PEPPAAQAGYSNTRELGRLLYTDYVYPFELASLLLLVAMIVAVTLTLRKRKGVRYLNPSE 180 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ + + ++ + + K Sbjct: 181 QISIKRGDRVELISMPAEK 199 >gi|187929284|ref|YP_001899771.1| NADH dehydrogenase subunit J [Ralstonia pickettii 12J] gi|187726174|gb|ACD27339.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ralstonia pickettii 12J] Length = 210 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 118/199 (59%), Gaps = 2/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY F+ + ++++ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFALVLVLAALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118 VYVGAV+V FLF++MM+DIDIE + F+G++ +V FM Sbjct: 61 VYVGAVMVLFLFVVMMIDIDIEHLRRDFWTYVPMAAFVGVVIILEMAVVLTKTFMGRVQP 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + F G N + +GK++YT Y Y E++G +LLL+++ A+ L R R+D K Q++S Sbjct: 121 VQELPKGFTGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDTKAQNVSD 180 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ + + +V + + K Sbjct: 181 QIRVKRKDRVRLVSMPAEK 199 >gi|90417834|ref|ZP_01225746.1| NADH dehydrogenase I, J subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337506|gb|EAS51157.1| NADH dehydrogenase I, J subunit [Aurantimonas manganoxydans SI85-9A1] Length = 205 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 85/202 (42%), Positives = 129/202 (63%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++FFYLF+ +A+ S +VV RNP++SV LI FV AAGLFLL GAEF+A+I +VVY Sbjct: 4 LQAVFFYLFALVAVGSGLMVVLARNPVHSVLFLILTFVAAAGLFLLAGAEFLALILIVVY 63 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV + FLF++MMLDID + + IG++ +V A+ + + ++ Sbjct: 64 VGAVAILFLFVVMMLDIDFGRVKRDTLKYAPVGVIIGVVLLAELVIAATGNYYDPQMAVA 123 Query: 123 -----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + +N+E +G VLYT+Y +++G IL ++M+GAIVL LRH+ +KRQ I Sbjct: 124 TSMPIPPLEVVSNIEALGSVLYTRYILFFQLAGLILFVAMVGAIVLTLRHKEGLKRQSIP 183 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 +Q+ P ++ + KV+SGKGI Sbjct: 184 QQVGRTPATAVEIRKVESGKGI 205 >gi|39936006|ref|NP_948282.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris CGA009] gi|192291661|ref|YP_001992266.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris TIE-1] gi|39649860|emb|CAE28382.1| NADH-ubiquinone dehydrogenase chain J [Rhodopseudomonas palustris CGA009] gi|192285410|gb|ACF01791.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodopseudomonas palustris TIE-1] Length = 212 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 85/202 (42%), Positives = 128/202 (63%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M LFFYL++ +AI ++ +VV RNP++S LI FVNAAG+F+L+GAEF+AMI +V Sbjct: 1 MSMPVLFFYLYAGVAIAAAVMVVVARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VYVGAV V FLF+IMMLD+D IG + ++ + V S Sbjct: 61 VYVGAVAVLFLFVIMMLDVDYSQLREGFLEYLPFGLLIGFIFLAELLLLAGGWVISPTVT 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + S + +N E +G VLYT+Y + ++SG +LL++M+GAIVL LRH++ +KRQDI+ Sbjct: 121 KAVTSPIPTGVSNTEALGLVLYTRYIHYFQVSGMVLLVAMVGAIVLTLRHKKKVKRQDIA 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q + + ++ + VK+G+G+ Sbjct: 181 AQNARSKETAMAIRHVKTGQGL 202 >gi|189184496|ref|YP_001938281.1| NADH dehydrogenase subunit J [Orientia tsutsugamushi str. Ikeda] gi|189181267|dbj|BAG41047.1| NADH dehydrogenase I chain J [Orientia tsutsugamushi str. Ikeda] Length = 202 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LFFYLFS +A++ S V+T +NP+Y+V LIF F N +GL +LLGAEF+A + ++VY GA Sbjct: 2 LFFYLFSVLALLGSIGVITSKNPVYAVLWLIFVFCNTSGLLILLGAEFLAFLLVIVYAGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V + FLF++MML+I + K R L I++ I+ S +V G + Sbjct: 62 VAILFLFVVMMLNIKSDNLVLVKTRTILNIPIYVIISFIFIIDLSIIIVM-GFGNYCPIH 120 Query: 126 FKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 ++ NN ++ IG+VLYT+YA P ++SG ILL++MIG +VL +R R +KRQD Q+ N Sbjct: 121 YEENNLDIKAIGRVLYTEYALPFQLSGIILLIAMIGCVVLTVRKRSGVKRQDHYSQINRN 180 Query: 184 PDNSIVMVKVKSGKGI 199 ++SI +VKV+ KGI Sbjct: 181 RNSSIQVVKVEVNKGI 196 >gi|167562186|ref|ZP_02355102.1| NADH dehydrogenase subunit J [Burkholderia oklahomensis EO147] gi|167569431|ref|ZP_02362305.1| NADH dehydrogenase subunit J [Burkholderia oklahomensis C6786] Length = 218 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 125/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V KR + +G +I+ + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINVDVLRRDFKRFVPMATAVG----AIIIVETALILWRGYGA 116 Query: 121 LSRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + V N + IGKV+YT Y + EI+G +LL+++I A+ L + +D K Sbjct: 117 TASPVRDVAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ +S+Q++ ++ + +VK+++ K Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201 >gi|319943357|ref|ZP_08017639.1| NADH-quinone oxidoreductase subunit J [Lautropia mirabilis ATCC 51599] gi|319743172|gb|EFV95577.1| NADH-quinone oxidoreductase subunit J [Lautropia mirabilis ATCC 51599] Length = 254 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 74/200 (37%), Positives = 130/200 (65%), Gaps = 9/200 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + S+ F+LF+ + + ++ V+T RNP++S L+ FV++A ++LL+ AEF+A++ ++ Sbjct: 1 MDVISVLFFLFALVTVFAATRVITARNPVHSALFLVLTFVSSAAIWLLMKAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID++ + GF S +G+ A +IV + ++++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDIDLD----NLRVGFWRSLPVGLFVAAIIVVELSLVLWAHFGG 116 Query: 120 ----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +L + +N + +G++LYT Y YPLEI+G ILL++M+ AI L LR R+D K Q+ Sbjct: 117 VQEADLVQPAADYDNAKALGELLYTGYIYPLEIAGMILLVAMVAAIALTLRRRKDRKSQN 176 Query: 176 ISKQLESNPDNSIVMVKVKS 195 S+Q+ + + +V + + Sbjct: 177 PSQQVRVRAADRVRLVSMSA 196 >gi|217970165|ref|YP_002355399.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thauera sp. MZ1T] gi|217507492|gb|ACK54503.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thauera sp. MZ1T] Length = 201 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 2/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY + + ++++ V+T RNP+++ L+ F NA GL+LLL AEF+A+ ++ Sbjct: 1 MEFKTFVFYFLAAIMVLAALRVITARNPVHAALFLVLTFFNAGGLWLLLQAEFLAVTLVM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118 VYVGAV+V FLF++MMLDI+++ +GIL ++V ++ A Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDRLREGFWSYLPVGALVGILMLVEMVMVLGGSYFGLEAM 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + + +N +G+VLYT Y Y E++ +LL++M+ A+ L LR R+ +K S+ Sbjct: 121 PAPAPVAADYSNTRELGRVLYTDYVYAFELASLVLLVAMVSAVALTLRKRKGLKSIPPSE 180 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ + + +VK++S K Sbjct: 181 QVAVRREGRVELVKMQSEK 199 >gi|82702229|ref|YP_411795.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosospira multiformis ATCC 25196] gi|82410294|gb|ABB74403.1| NADH dehydrogenase subunit J [Nitrosospira multiformis ATCC 25196] Length = 201 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 115/199 (57%), Gaps = 2/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY FS + + S+ V+T RNP++S L+ AF +AGL+LLL AEF+A+ ++ Sbjct: 1 MSFTDIIFYFFSAVLVASALGVITARNPVHSALLLVLAFFASAGLWLLLEAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VYVGAV+V FLF++MMLDI++ + F +G++ + + F A Sbjct: 61 VYVGAVMVLFLFVVMMLDINLARLREGFWKWFPFGLLLGLVMSIEMAMVLTGKQFGANEL 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + +N + +G+++YT+Y Y E++ ILL++++ AI L LR R + K D++K Sbjct: 121 PAPAARAADYSNTKELGRLIYTEYVYAFELAAVILLVAIVAAIALTLRQRGESKSMDVAK 180 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ ++ I +V + S K Sbjct: 181 QVAVKREDRIRIVSMASEK 199 >gi|83951756|ref|ZP_00960488.1| NADH dehydrogenase subunit J [Roseovarius nubinhibens ISM] gi|83836762|gb|EAP76059.1| NADH dehydrogenase subunit J [Roseovarius nubinhibens ISM] Length = 202 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 80/202 (39%), Positives = 123/202 (60%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +L FYLF+ I+ V RNP++SV LI +F++AAGLF+LLGAEFVAM+ ++ Sbjct: 1 MTVFALAFYLFATCVIVGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLD+D + R + IG++ A F+ E Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGVVLLMQFALAYGAWDFAEGAE 120 Query: 121 LSRLVFKGN---NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 +R + N +G ++Y +Y ++SG ILL++M+GAI L LRHR+D+KRQ++ Sbjct: 121 AARGAVTPDGVENTAALGLLIYDKYFLLFQLSGLILLVAMVGAIALTLRHRQDVKRQNVL 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ + VK G+G+ Sbjct: 181 AQMYRDPAKAMELRDVKPGQGL 202 >gi|134283969|ref|ZP_01770665.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 305] gi|167893554|ref|ZP_02480956.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 7894] gi|167902000|ref|ZP_02489205.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei NCTC 13177] gi|167918269|ref|ZP_02505360.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei BCC215] gi|217420305|ref|ZP_03451811.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 576] gi|237811591|ref|YP_002896042.1| NADH dehydrogenase subunit j [Burkholderia pseudomallei MSHR346] gi|254181178|ref|ZP_04887775.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 1655] gi|134244758|gb|EBA44856.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 305] gi|184211716|gb|EDU08759.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 1655] gi|217397609|gb|EEC37625.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 576] gi|237502691|gb|ACQ95009.1| NADH dehydrogenase subunit j [Burkholderia pseudomallei MSHR346] Length = 218 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLD++I+V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDVNIDVLRRDFKRFVPMATAVG----AIIVVETALILWRGYGA 116 Query: 121 LSRLV--------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + V N + IGKV+YT Y + EI+G +LL+++I A+ L + +D K Sbjct: 117 TASPVRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ +S+Q++ ++ + +VK+ + K Sbjct: 177 RQRVSEQVKVRREDRVRLVKMPAEK 201 >gi|74317169|ref|YP_314909.1| NADH dehydrogenase I subunit J [Thiobacillus denitrificans ATCC 25259] gi|74056664|gb|AAZ97104.1| NADH dehydrogenase I chain J [Thiobacillus denitrificans ATCC 25259] Length = 211 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 111/196 (56%), Gaps = 2/196 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + FY F+ + + + V+T RNP+++ L+ AF AAGL+LLL AEF+A+ ++VYV Sbjct: 3 TTAIFYFFAAILVFAGLRVITARNPVHAALFLVLAFFTAAGLWLLLEAEFLAITLVLVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGEL 121 GAV+V FLF++MMLDI+++ + + IL ++ G Sbjct: 63 GAVMVLFLFVVMMLDINLDQLREGFWNYLPLAGVVAILLVIEMALILGGRHFGLDVIGVP 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 +N + +G+++YT Y Y E++ ILL++++ AI L LR R+D K D ++Q++ Sbjct: 123 PAQPADYSNTKELGRLIYTDYVYAFELAAVILLVAIVAAIALTLRRRKDTKYIDPAQQVK 182 Query: 182 SNPDNSIVMVKVKSGK 197 ++ + ++K+ + K Sbjct: 183 VKRNDRLRIIKMPAEK 198 >gi|91789107|ref|YP_550059.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Polaromonas sp. JS666] gi|91698332|gb|ABE45161.1| NADH dehydrogenase subunit J [Polaromonas sp. JS666] Length = 217 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 71/202 (35%), Positives = 124/202 (61%), Gaps = 11/202 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + + ++F V+T RNP+++ L+ AF AA +++LL AEF+A+ ++ Sbjct: 1 MDAKTGLFYVFAAVLLFAAFRVITARNPVHAALYLVLAFFQAAAVWILLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---- 116 VYVGAV+V FLF++MMLDI+I+ ++GF F + +I ++++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDSV----RKGFWKHFPLAGTVGAIIALEMSYVLMGGFRE 116 Query: 117 ---AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 A ++ + +N + +GK+LY++Y YPLE++ ILL++MI AI L LR R+D K Sbjct: 117 PPKAASAPGQIGAQVSNTKELGKLLYSEYLYPLEVAAVILLVAMIAAIALTLRQRKDTKY 176 Query: 174 QDISKQLESNPDNSIVMVKVKS 195 + S Q+ + + +VK+KS Sbjct: 177 INPSDQIRVKRGDRVSLVKMKS 198 >gi|121998535|ref|YP_001003322.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Halorhodospira halophila SL1] gi|121589940|gb|ABM62520.1| NADH dehydrogenase subunit J [Halorhodospira halophila SL1] Length = 203 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 74/194 (38%), Positives = 124/194 (63%), Gaps = 1/194 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+F+ + + ++ +V++VRNP+++ L+ AF NAA +++L GAEF+ + ++VY Sbjct: 1 MEQVIFYIFAGVLLFAATMVISVRNPVHAALFLVLAFFNAAVIWVLAGAEFLGIALVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV+V FLF++MMLDI+I + E + +G+ ++AA+L+ + G + Sbjct: 61 VGAVMVLFLFVLMMLDINIAPMREGFTRYLPVGALVAVLMAAQLVAVIVSERADLISGTI 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NN++ IG VLYT Y YP EI+ ILLL+++ AI L LR R +QD+S+QL Sbjct: 121 PEPAADVNNIQAIGGVLYTVYVYPFEIAAVILLLAIVAAITLTLRRREGTHKQDVSRQLS 180 Query: 182 SNPDNSIVMVKVKS 195 D+ + +V++KS Sbjct: 181 VKKDDRLRLVRMKS 194 >gi|53718856|ref|YP_107842.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei K96243] gi|53725806|ref|YP_103425.1| NADH dehydrogenase subunit J [Burkholderia mallei ATCC 23344] gi|67642183|ref|ZP_00440943.1| NADH dehydrogenase subunit J [Burkholderia mallei GB8 horse 4] gi|76809961|ref|YP_332853.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1710b] gi|121601517|ref|YP_992478.1| NADH dehydrogenase subunit J [Burkholderia mallei SAVP1] gi|124383891|ref|YP_001026719.1| NADH dehydrogenase subunit J [Burkholderia mallei NCTC 10229] gi|126440562|ref|YP_001058347.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 668] gi|126449514|ref|YP_001079996.1| NADH dehydrogenase subunit J [Burkholderia mallei NCTC 10247] gi|126453874|ref|YP_001065586.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106a] gi|167000359|ref|ZP_02266177.1| NADH dehydrogenase subunit J [Burkholderia mallei PRL-20] gi|167718854|ref|ZP_02402090.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei DM98] gi|167737862|ref|ZP_02410636.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 14] gi|167815045|ref|ZP_02446725.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 91] gi|167823461|ref|ZP_02454932.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 9] gi|167845013|ref|ZP_02470521.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei B7210] gi|167910236|ref|ZP_02497327.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 112] gi|226195411|ref|ZP_03791000.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei Pakistan 9] gi|242315732|ref|ZP_04814748.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106b] gi|254175409|ref|ZP_04882069.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 10399] gi|254190541|ref|ZP_04897048.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei Pasteur 52237] gi|254194999|ref|ZP_04901428.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei S13] gi|254202101|ref|ZP_04908464.1| NADH dehydrogenase I, J subunit [Burkholderia mallei FMH] gi|254207431|ref|ZP_04913781.1| NADH dehydrogenase I, J subunit [Burkholderia mallei JHU] gi|254258350|ref|ZP_04949404.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 1710a] gi|254298542|ref|ZP_04965994.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 406e] gi|254359853|ref|ZP_04976123.1| NADH dehydrogenase I, J subunit [Burkholderia mallei 2002721280] gi|52209270|emb|CAH35215.1| NADH dehydrogenase I chain J [Burkholderia pseudomallei K96243] gi|52429229|gb|AAU49822.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 23344] gi|76579414|gb|ABA48889.1| NADH dehydrogenase I chain J [Burkholderia pseudomallei 1710b] gi|121230327|gb|ABM52845.1| NADH dehydrogenase I, J subunit [Burkholderia mallei SAVP1] gi|124291911|gb|ABN01180.1| NADH dehydrogenase I, J subunit [Burkholderia mallei NCTC 10229] gi|126220055|gb|ABN83561.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 668] gi|126227516|gb|ABN91056.1| NADH dehydrogenase I, J subunit [Burkholderia pseudomallei 1106a] gi|126242384|gb|ABO05477.1| NADH dehydrogenase I, J subunit [Burkholderia mallei NCTC 10247] gi|147746348|gb|EDK53425.1| NADH dehydrogenase I, J subunit [Burkholderia mallei FMH] gi|147751325|gb|EDK58392.1| NADH dehydrogenase I, J subunit [Burkholderia mallei JHU] gi|148029093|gb|EDK86998.1| NADH dehydrogenase I, J subunit [Burkholderia mallei 2002721280] gi|157808368|gb|EDO85538.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 406e] gi|157938216|gb|EDO93886.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei Pasteur 52237] gi|160696453|gb|EDP86423.1| NADH dehydrogenase I, J subunit [Burkholderia mallei ATCC 10399] gi|169651747|gb|EDS84440.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei S13] gi|225932613|gb|EEH28611.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei Pakistan 9] gi|238523279|gb|EEP86718.1| NADH dehydrogenase subunit J [Burkholderia mallei GB8 horse 4] gi|242138971|gb|EES25373.1| NADH dehydrogenase subunit J [Burkholderia pseudomallei 1106b] gi|243063693|gb|EES45879.1| NADH dehydrogenase subunit J [Burkholderia mallei PRL-20] gi|254217039|gb|EET06423.1| NADH-quinone oxidoreductase, J subunit [Burkholderia pseudomallei 1710a] Length = 218 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLD++I+V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDVNIDVLRRDFKRFVPMATAVG----AIIVVETALILWRGYGA 116 Query: 121 LSRLV--------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + V N + IGKV+YT Y + EI+G +LL+++I A+ L + +D K Sbjct: 117 TASPVRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ +S+Q++ ++ + +VK+ + K Sbjct: 177 RQRVSEQVKVRREDRVRLVKMPADK 201 >gi|254467844|ref|ZP_05081250.1| NADH-ubiquinone oxidoreductase chain 6 [beta proteobacterium KB13] gi|207086654|gb|EDZ63937.1| NADH-ubiquinone oxidoreductase chain 6 [beta proteobacterium KB13] Length = 198 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 121/197 (61%), Gaps = 1/197 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ FYLFS + +++S V+T NP+YS SL+ AF +AAG++LLL AEF+A+ ++ Sbjct: 1 MIFTDYLFYLFSGILVLASLRVITANNPVYSALSLVLAFFSAAGIWLLLHAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+IE R F + I +L I FS+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIEALRQRFWSYFPVALLIALLFIFEIYLVVTDKFFSS-SD 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + + +N +IG VLYT Y P +++ ILL+++I AIVL + ++ K D Q+ Sbjct: 120 PAGIPLEKSNTHSIGSVLYTDYLLPFQVAAVILLVAIISAIVLTMYGKKSHKAIDPKDQI 179 Query: 181 ESNPDNSIVMVKVKSGK 197 + N ++ + +VK+KS K Sbjct: 180 KVNRNDRVRVVKMKSEK 196 >gi|329850719|ref|ZP_08265564.1| NADH-quinone oxidoreductase subunit J [Asticcacaulis biprosthecum C19] gi|328841034|gb|EGF90605.1| NADH-quinone oxidoreductase subunit J [Asticcacaulis biprosthecum C19] Length = 204 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 130/202 (64%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FYL + + +++ LVVT RNP++SV LI AF +AAGLF+LLGAEF+AM+ +V Sbjct: 1 MTLMAIAFYLMAAVTLVAGLLVVTARNPVHSVLYLILAFFSAAGLFVLLGAEFLAMLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D I++ + G+ GILA ELI A Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFIKLRQGFANYLAPGAVVAGILAFELIFVGWAVAGRGAAA 120 Query: 120 ELSRLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + N++ IG LYT YAY E +GF+LL++MIGAIVL LRHR +KRQDI Sbjct: 121 GNAPQAARPDATNIQTIGLELYTTYAYVFEAAGFVLLVAMIGAIVLTLRHRTYVKRQDIY 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 KQ+ +++ +V K+G+GI Sbjct: 181 KQVTRRRKDAVAVVPAKTGEGI 202 >gi|209518506|ref|ZP_03267327.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. H160] gi|209501051|gb|EEA01086.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. H160] Length = 230 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 122/207 (58%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVACALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLD++++V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDVNLDVLRKDFKRFVPMASAVG----AIIVVETALILWHGYGA 116 Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +N IGKV+YT Y + EI+G ILL+++I AI L H++D Sbjct: 117 TTAALHDTASAAAGMGDWSNTRVIGKVIYTNYIFAFEIAGLILLVAIIAAIALTTSHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ++S Q+ + + +VK+ S K Sbjct: 177 SKRQNVSAQVRVRAQDRVRVVKMPSEK 203 >gi|256821524|ref|YP_003145487.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kangiella koreensis DSM 16069] gi|256795063|gb|ACV25719.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kangiella koreensis DSM 16069] Length = 226 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 70/195 (35%), Positives = 112/195 (57%), Gaps = 2/195 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+F+ + I+S+ VVTVRN + +V L+ F +AA L++LL AEF+A+ ++ Sbjct: 1 MTAEQIVFYIFATLTIVSALGVVTVRNSVQAVLCLVLTFFSAAVLWMLLEAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLD+D R + I + VF E Sbjct: 61 VYVGAVMVLFLFVVMMLDVDFASLNQGFTRYVPLGILVAIGLLIGLYWVLRGEVFGLEAM 120 Query: 121 LSRL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + + +NVE +G++LYT Y Y EI+G ILL++++ AI L R RR+ + Q + Sbjct: 121 PEPVKHGAEHSNVEVLGRLLYTDYFYAFEIAGVILLVAIVAAISLTFRGRRERRGQSVPS 180 Query: 179 QLESNPDNSIVMVKV 193 Q ++ D + +VK+ Sbjct: 181 QHRASKDERLHIVKM 195 >gi|295676046|ref|YP_003604570.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1002] gi|295435889|gb|ADG15059.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia sp. CCGE1002] Length = 230 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVACALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDVLRKDFKRFVPMASAVG----AIIVIETALILWHGYGA 116 Query: 121 LSRLVF----------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +N IGKV+YT Y + EI+G ILL+++I AI L H++D Sbjct: 117 TATALHDTASAAAGMGDWSNTRLIGKVIYTNYIFAFEIAGLILLVAIIAAIALTTSHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ++S Q++ + + +VK+ S K Sbjct: 177 SKRQNVSAQVKVRAQDRVRVVKMPSEK 203 >gi|115278617|ref|YP_762486.1| NADH dehydrogenase subunit 6 [Tripsacum dactyloides] gi|114432108|gb|ABI74657.1| NADH dehydrogenase subunit 6 [Tripsacum dactyloides] Length = 333 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 13/189 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM +I I R S IG I E+ N + + Sbjct: 61 IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR--DIK 172 V N+E +G +LYT Y+ +S ILL++MIGAIVL + +K Sbjct: 121 SLGYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTIHMVK 180 Query: 173 RQDISKQLE 181 RQD+ ++ Sbjct: 181 RQDVFRRNA 189 >gi|121604339|ref|YP_981668.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Polaromonas naphthalenivorans CJ2] gi|120593308|gb|ABM36747.1| NADH dehydrogenase subunit J [Polaromonas naphthalenivorans CJ2] Length = 215 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 125/204 (61%), Gaps = 13/204 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + + ++F V+T RNP+++ L+ AF AA +++LL AEF+A+ ++ Sbjct: 1 MDAKTGLFYVFAAVLLFAAFRVITARNPVHAALFLVLAFFQAAAVWILLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++ ++GF F + +I ++++ E Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDSV----RKGFWKHFPLAGTVGAIIALEMSYVLMGGFRE 116 Query: 121 LSR---------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + L + +N + +GKVLY+QY YPLEI+ ILL+++I AI L LR R+D Sbjct: 117 PPQGASMPVSGELAAQVSNTKELGKVLYSQYIYPLEIAAVILLVAIIAAIALTLRERKDS 176 Query: 172 KRQDISKQLESNPDNSIVMVKVKS 195 KR + + Q+ + + +VK+KS Sbjct: 177 KRTNPADQVRVKSQDRVRLVKMKS 200 >gi|221638939|ref|YP_002525201.1| NADH dehydrogenase subunit J [Rhodobacter sphaeroides KD131] gi|221159720|gb|ACM00700.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131] Length = 199 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 74/199 (37%), Positives = 124/199 (62%), Gaps = 5/199 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY F+ A+ ++ +VVT RN +++V LI F+++AG+F+LLGAEFVAM+ ++VYVGA Sbjct: 1 MAFYCFAVPAVFAALMVVTQRNMVHAVLWLILVFLSSAGMFVLLGAEFVAMLLVIVYVGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSRL 124 V V FLF++MMLD+D E + R + +GI + +L + ++ + + Sbjct: 61 VAVLFLFVVMMLDVDFEALKSEVVRYMPVAALMGIVILLQLSMGIGAWVTADGAPAMRQA 120 Query: 125 VFKGN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 V N +G ++Y +Y Y + +G ILL++M+GAI+L LR RRD+KRQ++ Q+ Sbjct: 121 VTPDPNQIENSRALGLLIYDKYLYLFQTAGLILLVAMVGAILLTLRERRDVKRQNVLAQM 180 Query: 181 ESNPDNSIVMVKVKSGKGI 199 +P ++ + VK G+G+ Sbjct: 181 WRDPAKAMELKDVKPGQGL 199 >gi|254455980|ref|ZP_05069409.1| NADH dehydrogenase i chain j [Candidatus Pelagibacter sp. HTCC7211] gi|207082982|gb|EDZ60408.1| NADH dehydrogenase i chain j [Candidatus Pelagibacter sp. HTCC7211] Length = 210 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 124/206 (60%), Gaps = 7/206 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++FFYLFS +AI+S+ +V +N ++SVF LI F++ + LF+++GAEF+ MI L+ Sbjct: 1 MIAHAIFFYLFSLIAIVSAIMVTASKNTVHSVFFLILDFISISCLFIMIGAEFLGMIMLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MML++ + + G +G++ + LI ++ + + Sbjct: 61 VYVGAVAVLFLFVVMMLNVAQQKNQWFASEESSGHIPVGLIISTLIFFELIIVIGGWKYK 120 Query: 121 L-------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 S + +N +IG++LYT Y + +ISG ILL++M+GAIVL R R +K Sbjct: 121 PDLFDLNNSMTNYSLSNTHSIGQILYTDYIHIFQISGMILLVAMVGAIVLTFRKREGVKT 180 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q KQ+ + +++V+S KG+ Sbjct: 181 QSYLKQISRERSEGVKIIEVESNKGV 206 >gi|294677070|ref|YP_003577685.1| NADH-quinone oxidoreductase subunit J [Rhodobacter capsulatus SB 1003] gi|1709410|sp|P50975|NUOJ_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|3282575|gb|AAC25001.1| NUOJ [Rhodobacter capsulatus] gi|294475890|gb|ADE85278.1| NADH-quinone oxidoreductase, J subunit [Rhodobacter capsulatus SB 1003] gi|1586524|prf||2204231E NADH ubiquinone oxidoreductase Length = 202 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 80/202 (39%), Positives = 124/202 (61%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYLF+ +A+++ +VV +NP+++V LI F++AAGLF+L+GAEFVAM+ ++ Sbjct: 1 MTVFVFAFYLFAVVAVVAGLMVVLSKNPVHAVLWLILTFLSAAGLFVLMGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID + + +G ++ A+L + A Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFAALRGQLVRYAPVGGLIALVMLAQLATGLMVWNTADAAN 120 Query: 120 ELSRLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 L N +G +LY +Y Y + +G +LL++MIGAI+L LRHR DIKRQ++ Sbjct: 121 GLRAAPAPEGVENTAALGMILYDRYLYLFQGAGLVLLVAMIGAILLTLRHRTDIKRQNVL 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ MV VK G+G+ Sbjct: 181 AQMHRDPAKALEMVDVKPGQGL 202 >gi|221234956|ref|YP_002517392.1| NADH dehydrogenase subunit J [Caulobacter crescentus NA1000] gi|220964128|gb|ACL95484.1| NADH-quinone oxidoreductase chain J [Caulobacter crescentus NA1000] Length = 217 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 87/203 (42%), Positives = 127/203 (62%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYL +F+ I + LVV+ RNP++SV LI AF +AAGLF+LLGAEF+AM+ +V Sbjct: 13 MPVQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLVV 72 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLD+D + I ++ A +V + + Sbjct: 73 VYVGAVAVLFLFVVMMLDVDFAELRQGFVQYLPFGGLIALVIAIEMVMVVAAVATNGAAA 132 Query: 121 LSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + L N E IG+VLYT Y + +++G +LL++MIGAIVL LRH+ +KRQDI Sbjct: 133 KNPLPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKPGVKRQDI 192 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 KQ+ P + +V++K G+GI Sbjct: 193 GKQVARTPKTGMELVQIKPGEGI 215 >gi|71083591|ref|YP_266310.1| NADH dehydrogenase I subunit J [Candidatus Pelagibacter ubique HTCC1062] gi|91761988|ref|ZP_01263953.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique HTCC1002] gi|71062704|gb|AAZ21707.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique HTCC1062] gi|91717790|gb|EAS84440.1| NADH Dehydrogenase I Chain J [Candidatus Pelagibacter ubique HTCC1002] Length = 210 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 121/206 (58%), Gaps = 7/206 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++FFY FSF+AI+S+ +V +N ++SVF LI F++ + LF+++GAEF+ MI L+ Sbjct: 1 MLAHAIFFYTFSFIAIVSAIMVTVSKNTVHSVFFLILDFISISCLFIMIGAEFLGMIMLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MML++ + + + IG++ + +I ++ + + Sbjct: 61 VYVGAVAVLFLFVVMMLNVAQQKNQWFSAQESSKHIPIGLIVSVIIFFELIIVIGGWKYK 120 Query: 121 LS-------RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + N +IG VLYT Y + ++SG ILL++MIGAIVL R R +KR Sbjct: 121 PDLVSAMSLTIDKNITNTHSIGYVLYTDYIHVFQLSGMILLVAMIGAIVLTFRQRSGVKR 180 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q Q+ + + ++ V++ KG+ Sbjct: 181 QSYFSQISRERSDGVELIDVENNKGV 206 >gi|299530751|ref|ZP_07044166.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas testosteroni S44] gi|298721267|gb|EFI62209.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas testosteroni S44] Length = 226 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 17/210 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F VVT RNP+++V +LI AF AA ++LLL AEF+ + ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY+GAV+V FLF++MMLDI I+ +RGF F L LI ++ G+ Sbjct: 61 VYLGAVMVLFLFVVMMLDIRID----SMRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGD 116 Query: 121 L-------------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR Sbjct: 117 VEDAKAVGATMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRK 176 Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R+D K + + Q+ + I +VKV S K Sbjct: 177 RKDSKAMNPADQIRVRASDRIKLVKVDSTK 206 >gi|264677207|ref|YP_003277113.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas testosteroni CNB-2] gi|262207719|gb|ACY31817.1| NADH-ubiquinone/plastoquinone oxidoreductase [Comamonas testosteroni CNB-2] Length = 226 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 17/210 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F VVT RNP+++V +LI AF AA ++LLL AEF+ + ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY+GAV+V FLF++MMLDI I+ +RGF F L LI ++ G+ Sbjct: 61 VYLGAVMVLFLFVVMMLDIRID----SMRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGD 116 Query: 121 L-------------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR Sbjct: 117 VEDAKAVGATMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRK 176 Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R+D K + + Q+ + I +VKV S K Sbjct: 177 RKDSKAMNPADQIRVRASDRIKLVKVDSTK 206 >gi|221068603|ref|ZP_03544708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Comamonas testosteroni KF-1] gi|220713626|gb|EED68994.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Comamonas testosteroni KF-1] Length = 226 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 123/206 (59%), Gaps = 9/206 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F VVT RNP+++V +LI AF AA ++LLL AEF+ + ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAAIWLLLKAEFLGIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNF------ 112 VY+GAV+V FLF++MMLDI I+ + F + IG+L A +V F Sbjct: 61 VYLGAVMVLFLFVVMMLDIRIDAMRRGFWKHFPFAALIGVLIAFEMGMVLMGGFGDVEDA 120 Query: 113 -MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 V + + +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR R+D Sbjct: 121 KAVGTTMVNAAGQTVPYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRKRKDS 180 Query: 172 KRQDISKQLESNPDNSIVMVKVKSGK 197 K + + Q+ + I +VKV S K Sbjct: 181 KAMNPADQIRVRASDRIKLVKVDSTK 206 >gi|145589225|ref|YP_001155822.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047631|gb|ABP34258.1| NADH dehydrogenase subunit J [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 215 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 71/196 (36%), Positives = 121/196 (61%), Gaps = 2/196 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + ++FFY F+ + +IS+ V+T RNP+++ L+ AF A+GL++LL AEF+++ ++V Sbjct: 7 TLFAVFFYGFAGLLVISALRVITARNPVHAALFLVLAFFCASGLWMLLKAEFLSLALILV 66 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEG 119 YVGAV+V FLF++MMLD+DIE K+ +F +G I+ IV +F+ Sbjct: 67 YVGAVMVLFLFVVMMLDLDIEHLRRDFKKFLPVAFLMGTVIVLELSIVIIRSFIGTDTPV 126 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + NN + +G +++ Y Y EI+G ILL+++I A+ L LR+R+D K Q+I +Q Sbjct: 127 QPMPEEMMANNTQALGMLIFVDYVYAFEIAGVILLVAIIAAVALTLRNRKDSKSQNIHEQ 186 Query: 180 LESNPDNSIVMVKVKS 195 + + + +VK+ S Sbjct: 187 VNVVAADRMRIVKMDS 202 >gi|34496405|ref|NP_900620.1| NADH-ubiquinone oxidoreductase, chain J [Chromobacterium violaceum ATCC 12472] gi|34102258|gb|AAQ58624.1| NADH-ubiquinone oxidoreductase, chain J [Chromobacterium violaceum ATCC 12472] Length = 214 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 121/205 (59%), Gaps = 10/205 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY+ S + + + VVT +NP+++ L+ AF +AG +LL+ +EF+A+ ++ Sbjct: 1 MNLTTVIFYVLSAILVFAGLRVVTAKNPVHAALYLVLAFFTSAGHWLLMESEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+IE + + GF + + ++V ++ S + Sbjct: 61 VYVGAVMVLFLFVVMMLDINIE----KLREGFWKNLPVAATVGAIMVFEMALILVSPQAS 116 Query: 121 LS------RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 LS L +NV+ +G LYT Y P EI+ +LLL+MI AI L +R R+D K Sbjct: 117 LSQYKAAAPLAADFSNVKMLGSQLYTTYLLPFEIAAVVLLLAMIAAIGLTMRTRKDSKVI 176 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 D + Q++ ++ + +VK+ + K + Sbjct: 177 DPAVQVKVRREDRVRIVKMDAVKKV 201 >gi|83942658|ref|ZP_00955119.1| NADH dehydrogenase I, J subunit [Sulfitobacter sp. EE-36] gi|83953897|ref|ZP_00962618.1| NADH dehydrogenase subunit J [Sulfitobacter sp. NAS-14.1] gi|83841842|gb|EAP81011.1| NADH dehydrogenase subunit J [Sulfitobacter sp. NAS-14.1] gi|83846751|gb|EAP84627.1| NADH dehydrogenase I, J subunit [Sulfitobacter sp. EE-36] Length = 200 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ I V RNP++SV LI +F++AAGLF+LL AEFVAM+ ++VY Sbjct: 1 MSVFAFYLFAISVIAGGLFTVISRNPVHSVLWLILSFLSAAGLFVLLNAEFVAMLLIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLD+D + R + IG++ V A ++ E Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLVILMQFVMAFGAWDANSAAEGL 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + +N +G +LY QY ++SG ILL++MIGAIVL LRHR D+KRQ++ Q Sbjct: 121 RTQVITDEVHNTAALGLILYDQYFLLFQLSGLILLVAMIGAIVLTLRHRADVKRQNVVDQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPKLAMKLNDVKPGQGL 200 >gi|114569914|ref|YP_756594.1| NADH dehydrogenase (quinone) [Maricaulis maris MCS10] gi|114340376|gb|ABI65656.1| NADH dehydrogenase subunit J [Maricaulis maris MCS10] Length = 203 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 125/200 (62%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + +L F+ FS +AI+S+ +VV RNP+ SV LI AF +AAGLF+LLGAEF+AM+ +VVY Sbjct: 2 LANLAFWAFSGVAILSALMVVIARNPVRSVLFLILAFFSAAGLFVLLGAEFLAMLLIVVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD+D E+ + LG ILA EL + + L Sbjct: 62 VGAVAVLFLFVVMMLDVDFTELKQGFLSYLPLGGLVAIILAVELGMIGMTWQASEQAMAL 121 Query: 122 SRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 NVE +G V+Y QY Y + +G +LL++MIGAIVL LRH+ ++RQ +S Q Sbjct: 122 RDAAIPDGLTNVEALGLVIYDQYVYFFQAAGLVLLVAMIGAIVLTLRHKPGVRRQSVSAQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + + +++ M +K G+GI Sbjct: 182 VARDRKDAVTMHDIKPGQGI 201 >gi|254486921|ref|ZP_05100126.1| NADH-quinone oxidoreductase chain j [Roseobacter sp. GAI101] gi|214043790|gb|EEB84428.1| NADH-quinone oxidoreductase chain j [Roseobacter sp. GAI101] Length = 200 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 116/200 (58%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ I V RNP++SV LI AF++AAGLF++L AEFVAM+ ++VY Sbjct: 1 MSVFAFYLFATCLIAGGLFTVISRNPVHSVLWLILAFLSAAGLFVMLNAEFVAMLLIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLD+D + R + IG++ V A + E Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKAEMARYMPLALLIGLIILMQFVMAFGAWDANVAAEGL 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + N +G +LY +Y ++SG ILL++MIGAIVL LRHR D+KRQD+ Q Sbjct: 121 RAHVVTDDVQNTAALGLILYDEYFLLFQLSGLILLVAMIGAIVLTLRHRPDVKRQDVVAQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MMRDPKLAMKLNDVKPGQGL 200 >gi|91977346|ref|YP_570005.1| NADH dehydrogenase subunit J [Rhodopseudomonas palustris BisB5] gi|91683802|gb|ABE40104.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] Length = 212 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 85/202 (42%), Positives = 126/202 (62%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M LFFYL++ AI ++ +VV RNP++S LI FVNAAG+F+L+GAEF+AMI +V Sbjct: 1 MSMPVLFFYLYAGAAIAAAVMVVVARNPVHSALFLILVFVNAAGMFVLMGAEFLAMILIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSA 117 VYVGAV V FLF+IMMLD+D IG + ++ + V Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFSRLREGFLEYLPFGLLIGAIFLAELLLLAGGWVITPTIT 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + +N E +G VLYT+Y + +ISG ILL++MIGAIVL LRH++ +KRQ+I+ Sbjct: 121 KTITAPIPTNVSNTEALGLVLYTRYIHYFQISGVILLVAMIGAIVLTLRHKKSVKRQNIN 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 +Q + ++ + +VK G+G+ Sbjct: 181 EQNARTKEAAMAIRQVKPGQGL 202 >gi|299066342|emb|CBJ37526.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum CMR15] Length = 210 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 115/196 (58%), Gaps = 2/196 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MM+D+DIE F+G I+ +V FM S Sbjct: 61 VYVGAVMVLFLFVVMMIDVDIEHLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQP 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + G N + +GK++YT Y Y E++G +LLL+++ A+ L R R+D K Q+++ Sbjct: 121 VQELPKALSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQNVAD 180 Query: 179 QLESNPDNSIVMVKVK 194 Q+ + + ++ + Sbjct: 181 QVRVQRKDRVRLISMP 196 >gi|83718554|ref|YP_441623.1| NADH dehydrogenase subunit J [Burkholderia thailandensis E264] gi|167580431|ref|ZP_02373305.1| NADH dehydrogenase subunit J [Burkholderia thailandensis TXDOH] gi|167618540|ref|ZP_02387171.1| NADH dehydrogenase subunit J [Burkholderia thailandensis Bt4] gi|257139681|ref|ZP_05587943.1| NADH dehydrogenase subunit J [Burkholderia thailandensis E264] gi|83652379|gb|ABC36442.1| NADH dehydrogenase I, J subunit [Burkholderia thailandensis E264] Length = 218 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 124/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVVSGLKVITSRNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDVLRRDFKRFVPMATVVG----AIIVVETALILWRGYGA 116 Query: 121 LSRLV--------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 V N + IGKV+YT Y + EI+G +LL+++I A+ L + +D K Sbjct: 117 TGSPVRDMAAGALAGMPNTKLIGKVIYTDYIFAFEIAGLVLLVAIIAAVALTAQKGKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ +S+Q++ ++ + +VK+++ K Sbjct: 177 RQRVSEQVKVRREDRVRLVKMQADK 201 >gi|84502625|ref|ZP_01000744.1| NADH dehydrogenase subunit J [Oceanicola batsensis HTCC2597] gi|84389020|gb|EAQ01818.1| NADH dehydrogenase subunit J [Oceanicola batsensis HTCC2597] Length = 201 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 122/201 (60%), Gaps = 2/201 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +L FYLF+F + V RNP++SV LI AF+++AGLF+LLGAEFVAM+ ++ Sbjct: 1 MTAAALAFYLFAFSTLAGGLFTVIARNPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLDID + + + IG++ A S Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFAALKAEMAKYMPLALLIGVILLMQFGLAYGSWEASDMAA 120 Query: 121 LSRLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 +RL +G N +G ++Y QY +++G ILL++MIGAIVL LRHR DIKRQ++ Sbjct: 121 SNRLAAMPEGENTAGLGLLIYDQYFLLFQLAGLILLVAMIGAIVLTLRHRTDIKRQNVLA 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ +P S+ + VK G+G+ Sbjct: 181 QMWRDPAKSMELKDVKPGQGL 201 >gi|254496131|ref|ZP_05109030.1| NADH dehydrogenase I, J subunit [Legionella drancourtii LLAP12] gi|254354672|gb|EET13308.1| NADH dehydrogenase I, J subunit [Legionella drancourtii LLAP12] Length = 219 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 20/211 (9%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY+F+ + + S+ +V+T NP+ V L+ F ++ L++L AEF+A+I ++VYVGAV Sbjct: 9 IFYVFAALTVGSALMVITQNNPVRCVLFLVLTFFTSSVLWILAEAEFLALILVLVYVGAV 68 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----------- 115 + FLF++MML+IDIE KR + L L++ A+ F Sbjct: 69 MTLFLFVVMMLNIDIESMRGHFKRYLPFGLILVALLTGLLMVATPAGTFKDNVERQQNAG 128 Query: 116 ---------SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 ++E + + + +N E +G VLYT Y E++ +LL++++ AI L+ R Sbjct: 129 QPILIQQGRTSELKTEPQLIEMSNTEALGMVLYTDYFLAFELAAVLLLVAIVSAITLVHR 188 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R KRQDI +Q+ + D + +V +K+ K Sbjct: 189 GPRQSKRQDIKQQIMTRRDERVKLVSMKAEK 219 >gi|288958980|ref|YP_003449321.1| NADH dehydrogenase I chain J [Azospirillum sp. B510] gi|288911288|dbj|BAI72777.1| NADH dehydrogenase I chain J [Azospirillum sp. B510] Length = 204 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 82/204 (40%), Positives = 132/204 (64%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++Q + FY+F+ + + S +V++ RNP++SV LI AF AAGL +L+GAEF+AMI ++ Sbjct: 1 MIVQGIAFYVFAALLVASGVMVISARNPVHSVLYLILAFFQAAGLCVLMGAEFIAMILVI 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VF 115 VYVGAV V FLF++MMLDI+ E+ + + LG+ IL AEL ++ V Sbjct: 61 VYVGAVAVLFLFVVMMLDINFRELRQGAMEALPLGALVGLILLAELAAVLGGWIVAPNVA 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + G + + + N +G+++YTQY Y + SG ILL++MIGAIVL LRHR +++Q+ Sbjct: 121 ATIGAPTPALDQVTNTHALGRLIYTQYVYLFQASGIILLIAMIGAIVLTLRHRAGVRKQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 + Q+ ++ + + KV +G+G+ Sbjct: 181 VGVQIARRREDVVAIRKVTTGEGV 204 >gi|297538947|ref|YP_003674716.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera sp. 301] gi|297258294|gb|ADI30139.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylotenera sp. 301] Length = 217 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 67/195 (34%), Positives = 113/195 (57%), Gaps = 2/195 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 Q + FY + + + ++ V+T RNP+Y+ L+ AF AAG++LLL AEF+A+ ++VY Sbjct: 8 FQDIVFYTLAAVLLYAAISVITTRNPVYAALYLVLAFFTAAGIWLLLEAEFLAIALVLVY 67 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV+V FLF++MMLDI+++ + +G L A +V F A+ ++ Sbjct: 68 VGAVMVLFLFVVMMLDINLDKLREGFWNALPVALPVGGLMAVEMVMIVGVRNFGADKVIA 127 Query: 123 RL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 +N +G+VLYT Y P E++ +LL++++ AI L LR R++ K D SKQ+ Sbjct: 128 PPAHAADYSNTAELGRVLYTDYLLPFELASVVLLVAIVAAIALTLRDRKESKSVDPSKQV 187 Query: 181 ESNPDNSIVMVKVKS 195 + I ++K+ + Sbjct: 188 LVKKADRIRILKMDA 202 >gi|94496471|ref|ZP_01303048.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas sp. SKA58] gi|94424217|gb|EAT09241.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas sp. SKA58] Length = 203 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/200 (36%), Positives = 114/200 (57%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FYLF+ + + S L + RNP++SV LI AF NAAGL +LLGAEF+AM+ ++VY Sbjct: 2 IHVVAFYLFATIVVCSGALTILSRNPVHSVLWLILAFFNAAGLMILLGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EG 119 VGAV V FLF++MMLDID + ++ IV Sbjct: 62 VGAVAVLFLFVVMMLDIDFAELRAGFVSYLPFGLLVALVLLAEIVLGIGLWSVGPIELAQ 121 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + +N++ IG +LYT+Y + E +G +LL++MIGAIVL R R ++ Q+I++Q Sbjct: 122 RAGPVNPELSNIQAIGALLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRPQNIARQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + P +++ V G+G+ Sbjct: 182 NQRRPQDAVRNVNQPVGQGV 201 >gi|83858405|ref|ZP_00951927.1| NADH dehydrogenase subunit J [Oceanicaulis alexandrii HTCC2633] gi|83853228|gb|EAP91080.1| NADH dehydrogenase subunit J [Oceanicaulis alexandrii HTCC2633] Length = 202 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 79/200 (39%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FY+ S A++S+ +VV +NP+ +V LI AF +AAGLF+LLGAEF+AMI ++VY Sbjct: 2 LSAAAFYILSATAVLSALMVVIAKNPVRAVLFLILAFFSAAGLFVLLGAEFLAMILVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121 VGAV V FLF++MMLDID + + + A ++ V + Sbjct: 62 VGAVAVLFLFVVMMLDIDFAQLKEGFISHAPLGGVVALALAGILAMTGLSWVSADSASAA 121 Query: 122 --SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 S NV +G ++Y +Y +I+G +LL++MIGAIVL LRHR +KRQD+ Q Sbjct: 122 LQSPTPDDMTNVAALGALIYDRYVLFFQIAGLVLLVAMIGAIVLTLRHRDGVKRQDMHAQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + ++S+ +V +KSG+GI Sbjct: 182 VNRKREDSVEIVDIKSGEGI 201 >gi|300691034|ref|YP_003752029.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum PSI07] gi|299078094|emb|CBJ50737.1| NADH-quinone oxidoreductase subunit J [Ralstonia solanacearum PSI07] Length = 210 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 65/195 (33%), Positives = 114/195 (58%), Gaps = 2/195 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MM+D+DIE F+G I+ +V FM S Sbjct: 61 VYVGAVMVLFLFVVMMIDVDIENLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQP 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + G N + +GK++YT Y Y E++G +LLL+++ A+ L R R+D K Q ++ Sbjct: 121 VQELPKTLSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQKVAD 180 Query: 179 QLESNPDNSIVMVKV 193 Q+ + + +V + Sbjct: 181 QIRVQRKDRVRLVSM 195 >gi|225627308|ref|ZP_03785345.1| NADH-quinone oxidoreductase subunit J [Brucella ceti str. Cudo] gi|237815247|ref|ZP_04594245.1| NADH-quinone oxidoreductase subunit J [Brucella abortus str. 2308 A] gi|225617313|gb|EEH14358.1| NADH-quinone oxidoreductase subunit J [Brucella ceti str. Cudo] gi|237790084|gb|EEP64294.1| NADH-quinone oxidoreductase subunit J [Brucella abortus str. 2308 A] Length = 215 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 121/190 (63%), Gaps = 4/190 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF+ Sbjct: 26 IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 85 Query: 74 IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---N 129 +MMLD+D E+ + +G+ IL ELI ++ M G+ + + Sbjct: 86 VMMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVATRT 145 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 N +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ I Q+ P+ +I Sbjct: 146 NTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETAIE 205 Query: 190 MVKVKSGKGI 199 + KV++GKGI Sbjct: 206 IRKVETGKGI 215 >gi|254419970|ref|ZP_05033694.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Brevundimonas sp. BAL3] gi|196186147|gb|EDX81123.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Brevundimonas sp. BAL3] Length = 208 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 89/201 (44%), Positives = 135/201 (67%), Gaps = 4/201 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + FYL + A++S LVVT RNP++SV LI AF +AAGLF+LLGAEF+AM+ +VVY Sbjct: 2 LQGIAFYLLAATAVVSGLLVVTARNPVHSVLWLILAFFSAAGLFVLLGAEFLAMLLVVVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD+D +++ E + +G+ +L AE+I+ +S + A L Sbjct: 62 VGAVAVLFLFVVMMLDVDFLKLREGYARYLPIGAVIAAVLLAEMILVSSAVIQGGATAGL 121 Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + +NVE IG+VLYT Y Y + +G +LL++MIGAI L LRH+ IKRQ+I+ Sbjct: 122 AGPGAPDPDMSNVEAIGRVLYTDYIYFFQAAGIVLLIAMIGAITLTLRHKPHIKRQNITD 181 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ + ++ + V++G+G+ Sbjct: 182 QVNRSAAKAMEVKSVQTGQGV 202 >gi|300023444|ref|YP_003756055.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hyphomicrobium denitrificans ATCC 51888] gi|299525265|gb|ADJ23734.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hyphomicrobium denitrificans ATCC 51888] Length = 216 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 132/202 (65%), Gaps = 6/202 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ FFYLF+ +A+ S +V+ RNP+++V L+ AF NAAGLFLLLGAEF+AM+ ++VYV Sbjct: 3 EAGFFYLFAVLAVASGAMVILARNPVHAVLFLVLAFFNAAGLFLLLGAEFLAMLLVIVYV 62 Query: 64 GAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS--NFMVFSAEGE 120 GAV V FLF++MMLD+D E+ K +G+ G++ AEL+ S F + Sbjct: 63 GAVSVIFLFVVMMLDVDFAELKAGFIKNAKIGAIVGGVVLAELVALFSFRGFSIAPTVNV 122 Query: 121 LSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + G N +G++LYT+Y Y + SG ILL++MIGAIVL L+HR ++KRQ I+ Sbjct: 123 AAPMPAAGSTLTNTAALGQILYTKYVYLFQASGMILLVAMIGAIVLTLKHRTNVKRQSIA 182 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +P ++ +VKV +G + Sbjct: 183 AQVSRDPAKTLEVVKVPTGGSV 204 >gi|319779207|ref|YP_004130120.1| NADH-ubiquinone oxidoreductase chain J [Taylorella equigenitalis MCE9] gi|317109231|gb|ADU91977.1| NADH-ubiquinone oxidoreductase chain J [Taylorella equigenitalis MCE9] Length = 263 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 114/199 (57%), Gaps = 7/199 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYL + + + + VV R+P+ V LI AF NA+ L++L+GAEF+ ++ ++ Sbjct: 1 MTFTDILFYLLAIVLLYAGVRVVLARHPVVGVLHLILAFFNASMLWILIGAEFLGLLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGAV+V FLF++MM+D+ E ++ F IG++ ++V F++ SA + Sbjct: 61 IYVGAVMVLFLFVVMMVDVVPET----LRKDFRTYLPIGLVVGGVMVSEIAFILGSAYLD 116 Query: 121 LSRL---VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 S NN +G +Y++Y+YP+++ ILL+ MI AI L LR R++ K +S Sbjct: 117 SSSPKSWPDTYNNTLALGIEMYSKYSYPIQVGALILLVGMIAAIALTLRERKNRKYVLVS 176 Query: 178 KQLESNPDNSIVMVKVKSG 196 QL+ + + +V + S Sbjct: 177 DQLKVEAKDRVRLVSLPSE 195 >gi|291498625|gb|ADE08099.1| nad6-1 [Triticum aestivum] gi|291498626|gb|ADE08100.1| nad6-2 [Triticum aestivum] Length = 305 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 11/188 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ + S A++S +VV +NP++SV I F + +GL +LLG +F AMI+ VV++G Sbjct: 18 TMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHIG 77 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSR 123 A+ V FLF++MM +I I R S IG++ E+ N + + Sbjct: 78 AIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNT 137 Query: 124 L----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KR Sbjct: 138 TSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKR 197 Query: 174 QDISKQLE 181 QD+ ++ Sbjct: 198 QDVFRRNA 205 >gi|328543696|ref|YP_004303805.1| NADH dehydrogenase I chain J transmembrane protein [polymorphum gilvum SL003B-26A1] gi|326413440|gb|ADZ70503.1| Probable NADH dehydrogenase I chain J transmembrane protein [Polymorphum gilvum SL003B-26A1] Length = 204 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 92/204 (45%), Positives = 144/204 (70%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++++LFFYLF+ + + S+F+V+ RNP++SV LI AFVN+AGLF+LLGAE++AM+ +V Sbjct: 1 MILKALFFYLFAGVTVASAFMVIASRNPVHSVLFLILAFVNSAGLFVLLGAEYLAMLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFM----VF 115 VYVGAV V FLF++MMLD+D +E+ + + +G+ IL EL++ + V Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGALVGVILMVELLLVVGAWAIAPEVI 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + + + +NVE IG+VLYT+Y + +++G +LL++M+GAIVL LRH+ +KRQD Sbjct: 121 AHGSQPIPPLDQMSNVEAIGQVLYTKYVFFFQVAGLVLLVAMVGAIVLTLRHKEGVKRQD 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I Q+ N ++I + KV+SGKGI Sbjct: 181 IPTQVARNKKSAIEIRKVESGKGI 204 >gi|294011318|ref|YP_003544778.1| NADH dehydrogenase I chain J [Sphingobium japonicum UT26S] gi|292674648|dbj|BAI96166.1| NADH dehydrogenase I chain J [Sphingobium japonicum UT26S] Length = 203 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/200 (37%), Positives = 115/200 (57%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FYLF+ + + S L + RNP++SV LI AF NAAGL +LLGAEF+AM+ ++VY Sbjct: 2 IHVIAFYLFAILVVSSGALTILSRNPVHSVLWLIMAFFNAAGLMVLLGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EG 119 VGAV V FLF++MMLDID I ++ IV Sbjct: 62 VGAVAVLFLFVVMMLDIDFAELRAGFVDYLPFGLLIALVLLAEIVLGIGLWSAGPIELAQ 121 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + + +N++ IG +LYT+Y + E +G +LL++MIGAIVL R R ++ Q+++KQ Sbjct: 122 RAAPVNPELSNIQAIGALLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRGQNVAKQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 P++++ V G+G+ Sbjct: 182 NRRRPEDAVRNVNQPVGQGV 201 >gi|148285164|ref|YP_001249254.1| NADH dehydrogenase subunit J [Orientia tsutsugamushi str. Boryong] gi|146740603|emb|CAM81257.1| NADH dehydrogenase I chain J [Orientia tsutsugamushi str. Boryong] Length = 202 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 124/196 (63%), Gaps = 3/196 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LFFYLFS +A++ S V+T +NP+Y+ LIF F N +GL +LLGAEF+A + ++VY GA Sbjct: 2 LFFYLFSVLALLGSIGVITSKNPVYAALWLIFVFCNTSGLLILLGAEFLAFLLVIVYAGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V + FLF++MML+I + K R L I+A I+ S +V + Sbjct: 62 VAILFLFVVMMLNIKSDNLVLVKTRTILNIPIYVIIAFIFIIDLSIIIVM-CFSNYCPIH 120 Query: 126 FKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 ++ NN ++ IG+VLYT+YA ++SG ILL++MIG +VL +R R +KRQD Q+ N Sbjct: 121 YEENNLDIKAIGRVLYTEYALQFQLSGIILLIAMIGCVVLTVRKRSGVKRQDHYSQINRN 180 Query: 184 PDNSIVMVKVKSGKGI 199 ++SI +VKV+ KGI Sbjct: 181 RNSSIQVVKVEVNKGI 196 >gi|17546772|ref|NP_520174.1| NADH dehydrogenase subunit J [Ralstonia solanacearum GMI1000] gi|17429072|emb|CAD15760.1| probable transmembrane nadh dehydrogenaseI(chain j) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 210 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/195 (33%), Positives = 115/195 (58%), Gaps = 2/195 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS + ++S+ V+T +NP+++ L+ +F AA +++LL AEF+A+ ++ Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MM+D+DIE F+G I+ +V FM S Sbjct: 61 VYVGAVMVLFLFVVMMIDVDIEHLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQP 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + G N + +GK++YT Y Y E++G +LLL+++ A+ L R R+D K Q+++ Sbjct: 121 VQELPKALSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQNVAD 180 Query: 179 QLESNPDNSIVMVKV 193 Q+ + + +V + Sbjct: 181 QIRVQRKDRVRLVSM 195 >gi|300311104|ref|YP_003775196.1| transmembrane NADH dehydrogenase I subunit J [Herbaspirillum seropedicae SmR1] gi|300073889|gb|ADJ63288.1| transmembrane NADH dehydrogenase I (Chain J) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 61/196 (31%), Positives = 120/196 (61%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FY+F+ + +I++ V+T RNP+++ L+ +F +AAG+++LL AEF+A++ ++ Sbjct: 1 MEFKTVLFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++ F + IG++ + ++ E + Sbjct: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQ 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + +GK+++T+Y Y EI+ ILL++++ A+ L LR R+D K D +K + Sbjct: 121 VPAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAV 180 Query: 181 ESNPDNSIVMVKVKSG 196 + + + +V +K+ Sbjct: 181 KVKASDRVRLVSMKAE 196 >gi|292493659|ref|YP_003529098.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus halophilus Nc4] gi|291582254|gb|ADE16711.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus halophilus Nc4] Length = 201 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 67/197 (34%), Positives = 113/197 (57%), Gaps = 3/197 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY F+ + + ++ +V+TVRNP+ + L+ AF +A ++LLL AEF+A++ ++VY Sbjct: 1 MEKILFYSFAAILLFAATMVITVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +GAV+V FLF++MMLDI++ R F + L A ++ F E S Sbjct: 61 IGAVMVLFLFVVMMLDINLAPLREGFARYLPVGFLVAALIALEMMAVLGAENFGLEQFTS 120 Query: 123 RLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 +N + +G +LYT Y YP E++ ILL++++ AI L LR R K QD +Q+ Sbjct: 121 PPPQGPDYSNTKELGNLLYTVYVYPFELASVILLVAIVAAIALTLRRRT-SKAQDPVQQI 179 Query: 181 ESNPDNSIVMVKVKSGK 197 + + +VK+ + K Sbjct: 180 RVRRQDRVRLVKMAAEK 196 >gi|30249728|ref|NP_841798.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas europaea ATCC 19718] gi|30180765|emb|CAD85679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosomonas europaea ATCC 19718] Length = 201 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 119/199 (59%), Gaps = 2/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q FY + + +I++ V+T+RNP++S L+ AFV ++GL+LLL AEF+A++ ++ Sbjct: 1 MNLQDFVFYSLASVVVIAALGVITLRNPVHSALLLVLAFVTSSGLWLLLEAEFLAIVLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++ + F + ++ I F E Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDRMREGFWKWFPFGAILALIMTGEIGIVLMSKQFGPENI 120 Query: 121 LSRL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + +N + +G++LYT Y Y E+S ILL++M+ AI + LR+R D K ++SK Sbjct: 121 QIPVSKSVDYSNTKELGQLLYTDYVYAFELSAVILLVAMVAAIAITLRYRTDKKSSNVSK 180 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ ++ + + ++ + + + Sbjct: 181 QVAASREKRLKVISIPAER 199 >gi|239831695|ref|ZP_04680024.1| NADH-quinone oxidoreductase subunit J [Ochrobactrum intermedium LMG 3301] gi|239823962|gb|EEQ95530.1| NADH-quinone oxidoreductase subunit J [Ochrobactrum intermedium LMG 3301] Length = 215 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 123/190 (64%), Gaps = 4/190 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF+ Sbjct: 26 IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 85 Query: 74 IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS---RLVFKGN 129 +MMLD+D E+ + +G+ IL ELI ++ M G+ + + + + Sbjct: 86 VMMLDVDFSELKRGALQYAPVGALVGLILLGELIFVFASNMFAPKLGQGAVPIPNIAERS 145 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 N +G +LYT + + +++G +LL++MIGAIVL LRH+ ++KRQ I Q+ P+ +I Sbjct: 146 NTAALGDILYTDFVFYFQVAGLVLLVAMIGAIVLTLRHKPNVKRQSIPAQVARTPETAIE 205 Query: 190 MVKVKSGKGI 199 + +V++GKGI Sbjct: 206 IKQVETGKGI 215 >gi|302879332|ref|YP_003847896.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gallionella capsiferriformans ES-2] gi|302582121|gb|ADL56132.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gallionella capsiferriformans ES-2] Length = 200 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 67/196 (34%), Positives = 114/196 (58%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYLF+ + +++ VV RNP+++ L+ AF +AAG+++LL AEF+A+ ++ Sbjct: 1 MSFFDVVFYLFATITVLAGVGVVVARNPVHAALFLVLAFCSAAGIWMLLEAEFLAITLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI++ R F + L +V + + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLVKLREGFWRWFPFGALLAGLMVFEMVWVLGSRQTADVSK 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 +N + +G+++YTQY YP EI+ ILL++M+ AI L LR R +K Q+++ Q+ Sbjct: 121 AIVHAADYSNTKELGRLIYTQYVYPFEIAAVILLVAMVAAIALTLRRRAGVKSQNVADQV 180 Query: 181 ESNPDNSIVMVKVKSG 196 + + + +V +KS Sbjct: 181 KVKKADRLRIVSMKSE 196 >gi|118590028|ref|ZP_01547432.1| NADH dehydrogenase subunit J [Stappia aggregata IAM 12614] gi|118437525|gb|EAV44162.1| NADH dehydrogenase subunit J [Stappia aggregata IAM 12614] Length = 229 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 90/204 (44%), Positives = 141/204 (69%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++++LFFYLF+ + + S+F+V+ RNP+ SV LI AFVN+AGLF+LLGAE++A++ +V Sbjct: 26 MILKALFFYLFAGVTLASAFMVIASRNPVTSVLFLILAFVNSAGLFILLGAEYLALLLVV 85 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE- 118 VYVGAV V FLF++MMLD+D +E+ + + +G+ IL EL++ +++ Sbjct: 86 VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGALVGVILLVELLMGLGAWVIAPGVL 145 Query: 119 ---GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 E + +N++ IG VLYT+Y Y +++G +LL++MIGAIVL LRH+ ++KRQ Sbjct: 146 GHGAEPMPALSDVSNIQAIGSVLYTKYIYFFQVAGLVLLVAMIGAIVLTLRHKPNVKRQS 205 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I Q+ N + SI + KV++GKGI Sbjct: 206 IPDQVARNRETSIEVRKVETGKGI 229 >gi|261856541|ref|YP_003263824.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Halothiobacillus neapolitanus c2] gi|261837010|gb|ACX96777.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Halothiobacillus neapolitanus c2] Length = 219 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 115/201 (57%), Gaps = 2/201 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+F+ A+IS+ VVTV+NP+++ L+ F + ++L+ AEF+ ++ L+ Sbjct: 1 MTLYQFLFYVFASSAVISAIRVVTVKNPVHAALFLVLTFFTTSLTWILMEAEFLGIVLLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSAE 118 VYVGAV+V FLF++MMLDI++ R F+ ++ ++ S+ + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLAPLREGFVRNLPVGVFVALVMVIELGLIVGSHAFGLANY 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + +N +G VLYT+Y YP EI+ FILL++++ AI L R R + Q+I + Sbjct: 121 PAPTAAAAGTSNTLALGSVLYTEYVYPFEIAAFILLVAIVAAISLAHRKREGVLYQNIDQ 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q++ N D+ + MVK+ S + Sbjct: 181 QVKVNRDDRVRMVKMVSSTPV 201 >gi|16126184|ref|NP_420748.1| NADH dehydrogenase subunit J [Caulobacter crescentus CB15] gi|13423398|gb|AAK23916.1| NADH dehydrogenase I, J subunit [Caulobacter crescentus CB15] Length = 205 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 87/203 (42%), Positives = 127/203 (62%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYL +F+ I + LVV+ RNP++SV LI AF +AAGLF+LLGAEF+AM+ +V Sbjct: 1 MPVQAIAFYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MMLD+D + I ++ A +V + + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELRQGFVQYLPFGGLIALVIAIEMVMVVAAVATNGAAA 120 Query: 121 LSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + L N E IG+VLYT Y + +++G +LL++MIGAIVL LRH+ +KRQDI Sbjct: 121 KNPLPNASPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKPGVKRQDI 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 KQ+ P + +V++K G+GI Sbjct: 181 GKQVARTPKTGMELVQIKPGEGI 203 >gi|83311877|ref|YP_422141.1| NADH:ubiquinone oxidoreductase subunit 6 [Magnetospirillum magneticum AMB-1] gi|82946718|dbj|BAE51582.1| NADH:ubiquinone oxidoreductase subunit 6 [Magnetospirillum magneticum AMB-1] Length = 202 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 78/202 (38%), Positives = 128/202 (63%), Gaps = 6/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +L FY+F+ +A+ S +V++ RNP++SV LI AF NAAGLFLLLGAEF+AM+ ++VY Sbjct: 2 FTALIFYMFAAIAVASGVMVISSRNPVHSVLWLILAFFNAAGLFLLLGAEFLAMVLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLDI++ + + IG++ ++ F+ + E Sbjct: 62 VGAVAVLFLFVVMMLDINMVEMKEGFLQYLPTGALIGLVLLVELLAMFGGWAFAPDVEAM 121 Query: 121 ---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + +N +GK++YT Y Y + SG +LL++MIG I+L R R +++Q I+ Sbjct: 122 IKAPTPTLDQASNTVALGKLIYTNYVYLFQASGLVLLVAMIGTILLTHRKRTGVRKQVIA 181 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 +Q+ + +S+ + KV+SG+GI Sbjct: 182 EQVNRSR-DSVELKKVQSGRGI 202 >gi|148555901|ref|YP_001263483.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas wittichii RW1] gi|148501091|gb|ABQ69345.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sphingomonas wittichii RW1] Length = 203 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 79/200 (39%), Positives = 124/200 (62%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++ FYLF+ + + S L + RNP++SV LI AF NAAGL +L+GAEF+AM+ ++VY Sbjct: 2 IQTIAFYLFAALVVASGTLTILARNPVHSVLWLILAFFNAAGLMILVGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--G 119 VGAV V FLF++MMLDID E+ + G + +LAAE+I + + Sbjct: 62 VGAVAVLFLFVVMMLDIDFAELRAGFAQYLPFGILLVLVLAAEMIFAIGAWKAGGIDMGA 121 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 ++ + N+E IG ++YT+Y Y E +G ILL++++GAIVL R R +K Q+++ Q Sbjct: 122 RIAPTPSEVPNIEAIGTLIYTRYLYIFEGAGLILLVALVGAIVLTHRTRGGVKTQNVTAQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 P+++ VK G+G+ Sbjct: 182 NMRRPEDATRNVKPAVGQGV 201 >gi|319405689|emb|CBI79312.1| NADH dehydrogenase I chain J [Bartonella sp. AR 15-3] Length = 206 Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 130/202 (64%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + FFY+F+F+ +IS+ +VVT RNP++SV LI F NAA LFLL GAEF+ +I LVVY Sbjct: 5 LAVAFFYIFAFIMLISAVIVVTARNPVHSVLFLILVFFNAAVLFLLAGAEFLGLILLVVY 64 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSF--FIGILAAELIVCASNFMVFSA-- 117 VGAV V FLF++MMLD+D E+ K +GSF I + + ++ F + S Sbjct: 65 VGAVAVLFLFVVMMLDVDFAELKSGALKYAPIGSFIGIIIAIELIFVFISNGFSLVSGVH 124 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + N + +G +LYT Y + +ISG ILL++MIGAIVL LRHR IKRQ I+ Sbjct: 125 ITQPMPDLAQRTNTQALGDILYTDYVFYFQISGIILLVAMIGAIVLTLRHRSGIKRQSIA 184 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +N+I + KV+SGKGI Sbjct: 185 AQVARTAENAIEIKKVESGKGI 206 >gi|171463535|ref|YP_001797648.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193073|gb|ACB44034.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 215 Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 123/196 (62%), Gaps = 2/196 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + ++FFY F+ + IIS+ V+T RNP+++ L+ AF A+GL++LL AEF+++ ++V Sbjct: 7 TLFAVFFYGFAGLLIISALRVITARNPVHAALFLVLAFFCASGLWMLLKAEFLSLALILV 66 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEG 119 YVGAV+V FLF++MMLD+D+E K+ +F +G I+ IV +F+ +A Sbjct: 67 YVGAVMVLFLFVVMMLDLDLEHLRRDFKKFLPVAFLMGAVIVLELSIVIIRSFIGTNAPV 126 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + NN + +G +++ YAY E++G ILL+++I A+ L LR+R+D K Q+I +Q Sbjct: 127 QPMPEEVMANNTQALGMLIFVDYAYAFEVAGVILLVAIIAAVALTLRNRKDSKSQNIHEQ 186 Query: 180 LESNPDNSIVMVKVKS 195 + + +VK+ S Sbjct: 187 VNVVAAERMRIVKMGS 202 >gi|148255904|ref|YP_001240489.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. BTAi1] gi|146408077|gb|ABQ36583.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. BTAi1] Length = 212 Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 137/202 (67%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +V+ +NP++SV LI AFVNA+GLF+L+GAEF+AMI +V Sbjct: 1 MILPALFFYLFAAVCVASAVMVIVSKNPVHSVLYLILAFVNASGLFVLMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSA 117 VYVGAV V FLF+IMMLD+D E+ E + +G GI EL++ S +++ + Sbjct: 61 VYVGAVAVLFLFVIMMLDVDFTELREGFLQYMPIGLVIGGIFLFELLLTVSYWVINPTTP 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + N E +G VLYT+Y + ++SG ILL++MIGAIVL LRH+ +KRQDI+ Sbjct: 121 KAITAAIPTNVTNTEALGLVLYTKYIHYFQLSGMILLVAMIGAIVLTLRHKVSVKRQDIN 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q P+ ++ + KV G+G+ Sbjct: 181 VQNARTPEMAMAVRKVAVGQGL 202 >gi|222110095|ref|YP_002552359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax ebreus TPSY] gi|221729539|gb|ACM32359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax ebreus TPSY] Length = 221 Score = 170 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 79/205 (38%), Positives = 122/205 (59%), Gaps = 8/205 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+T RNP+++V LI AF AAG++ LL AEF+A+ ++ Sbjct: 1 MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAGVWFLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VY+GAV+V FLF++MMLDI I+ + F + FIG L A + E Sbjct: 61 VYLGAVMVLFLFVVMMLDIRIDTVRRGFWKHFPLAAFIGALVAFEMAAVLMTGFRGIEEP 120 Query: 119 ------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + V +N + +GK+LYT+Y YP+E++ ILL++MI AI L LR R+D K Sbjct: 121 KAVEVLVNAAGQVVPYSNTKALGKLLYTEYLYPVEVAAVILLVAMIAAIALTLRQRKDSK 180 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 D S+Q+ + +VMV++ + Sbjct: 181 AIDPSEQVRVRARDRLVMVQLPVTQ 205 >gi|307293261|ref|ZP_07573107.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobium chlorophenolicum L-1] gi|306881327|gb|EFN12543.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobium chlorophenolicum L-1] Length = 203 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + L FYLF+ + + S L + RNP++SV LI AF NAAGL +LLGAEF+AM+ ++VY Sbjct: 2 IHVLAFYLFAILVVSSGALTILSRNPVHSVLWLIMAFFNAAGLMVLLGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EG 119 VGAV V FLF++MMLDID I + IV Sbjct: 62 VGAVAVLFLFVVMMLDIDFAELRAGFVNYLPFGLLIAFVLLAEIVLGIGLWSAGPIELAQ 121 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + + +N++ IG +LYT+Y + E +G +LL++MIGAIVL R R ++ Q+++KQ Sbjct: 122 RAAPVNPELSNIQAIGGLLYTRYIFLFEAAGIVLLVAMIGAIVLTHRARGGVRGQNVAKQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 P +++ V G+G+ Sbjct: 182 NRRRPQDAVRNVNQPVGQGV 201 >gi|312796892|ref|YP_004029814.1| NADH-quinone oxidoreductase chain J [Burkholderia rhizoxinica HKI 454] gi|312168667|emb|CBW75670.1| NADH-quinone oxidoreductase chain J (EC 1.6.5.3) [Burkholderia rhizoxinica HKI 454] Length = 265 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 123/210 (58%), Gaps = 17/210 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + +S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 36 MEFTTVLFYIFALLMTVSGLKVITARNPVSSALFLVLAFFNAAAIWMLLEAEFLAILLVL 95 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V +R + +G +IV + +++ G Sbjct: 96 VYVGAVMVLFLFVVMMLDINLDVLRRDFRRFVPVATIVG----AIIVIETALILWHGYGA 151 Query: 121 LSRLVFKG-------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V +N IG+++Y+ Y + E++G +LL++++ A+ L +R Sbjct: 152 TVSPVHDAVQATQAAGAGGALSNTRMIGRIIYSDYIFAFEVAGLVLLVAIVAALALTIRD 211 Query: 168 RRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 +D+KRQ +S+Q+ ++ + +V++ + K Sbjct: 212 GKDVKRQRVSEQVRVRREDRVRLVRMAAEK 241 >gi|319761771|ref|YP_004125708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alicycliphilus denitrificans BC] gi|330826551|ref|YP_004389854.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alicycliphilus denitrificans K601] gi|317116332|gb|ADU98820.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alicycliphilus denitrificans BC] gi|329311923|gb|AEB86338.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alicycliphilus denitrificans K601] Length = 222 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 77/205 (37%), Positives = 125/205 (60%), Gaps = 8/205 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FFYLFS + + ++F V+T RNP+++V LI AF AAG++LLL AEF+A+ ++ Sbjct: 1 MDVKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAGVWLLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113 VY+GAV+V FLF++MMLDI + + F + FIG L A + Sbjct: 61 VYLGAVMVLFLFVVMMLDIRFDTVRRGFWKHFPLAAFIGALVAFEMAAVLMTGFRGVEEP 120 Query: 114 -VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 A + V +N + +G+++YT+Y YP+EI+ ILL++MI AI L LR R+D+K Sbjct: 121 KAVPALVNAAGQVLPYSNTQALGRLMYTEYLYPVEIAAVILLVAMISAIALTLRQRKDVK 180 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 D + QL + + +V++K+ + + Sbjct: 181 AGDATAQLRARASDRLVVLKMPTTQ 205 >gi|323138154|ref|ZP_08073227.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocystis sp. ATCC 49242] gi|322396616|gb|EFX99144.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocystis sp. ATCC 49242] Length = 200 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 80/200 (40%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++FFY+F+ + I S+ +V+ RNP++SV LI AF N AGLFLL GAEF+AMI +VVY Sbjct: 1 MAAVFFYIFATIMIASACVVIFARNPVHSVLFLILAFCNGAGLFLLAGAEFLAMILIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE---LIVCASNFMVFSAEG 119 VGAV V FLF++MMLD+D + + +G++ ++ ++ Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKQGFNKYLPVGAAVGVVVLAELGMVAIGWQSAPSASSA 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + +V +N +G+VLYT+Y + S +LL +MIGAIVL L H+ ++KRQ I++Q Sbjct: 121 AATPIVANVSNTAALGQVLYTKYVIFFQASALVLLTAMIGAIVLTLHHKPNVKRQKIAEQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 N DN I + KV G+ Sbjct: 181 NARNRDNVIEIKKVPFRTGV 200 >gi|171058194|ref|YP_001790543.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leptothrix cholodnii SP-6] gi|170775639|gb|ACB33778.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leptothrix cholodnii SP-6] Length = 216 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 69/196 (35%), Positives = 118/196 (60%), Gaps = 1/196 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+FS + + ++F V+T R+P+++ L+ AF A+ +++LL AEF+A+ ++ Sbjct: 1 MDTTTALFYVFSAVLLFAAFRVITARSPVHAALYLVLAFFTASCVWMLLQAEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLDI+++V F + +G I+A E+ V Sbjct: 61 VYVGAVMVLFLFVVMMLDINVDVLRQGFWSHFPVAATVGVIIALEMAVVLLRGFNLPIAK 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + N + +G LYT Y YPLEI+ ILL+++I AI L LR R+D+K Q+ ++Q Sbjct: 121 AMPGAAEGVPNTKLLGIELYTDYLYPLEIAAVILLVAIIAAIALTLRRRKDVKGQNPAEQ 180 Query: 180 LESNPDNSIVMVKVKS 195 +++ + + +VK+ Sbjct: 181 VKAKKADRLRIVKMDP 196 >gi|115278547|ref|YP_762337.1| NADH dehydrogenase subunit 6 [Sorghum bicolor] gi|114309668|gb|ABI60885.1| NADH dehydrogenase subunit 6 [Sorghum bicolor] Length = 271 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 11/205 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V FLF++MM +I I R S IG++ E+ N + + + Sbjct: 61 IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLGYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 D+ ++ + +I+ S K + Sbjct: 181 DVFRRNALDFRRTIMRRPRASTKTV 205 >gi|220934171|ref|YP_002513070.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thioalkalivibrio sp. HL-EbGR7] gi|219995481|gb|ACL72083.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thioalkalivibrio sp. HL-EbGR7] Length = 197 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 68/198 (34%), Positives = 116/198 (58%), Gaps = 6/198 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY FS + + ++ ++TVRNP+++ L+ F +A L+++L AEF+ ++ ++ Sbjct: 1 MNFEAFLFYFFSVILVGAAVAMITVRNPVHAALFLVLTFFTSAALWIMLEAEFLGIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDI++ R + GF+ +GI+ A +V ++ Sbjct: 61 VYVGAVMVLFLFVVMMLDINLA----RMREGFIRFLPVGIVVAVAMVSVMTLVIVRHFHM 116 Query: 120 -ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 R NN E +G++LYT+Y YP EI+ ILL++++ AI L +R R K D ++ Sbjct: 117 EAPERAGADYNNTEALGQILYTEYVYPFEIAAVILLVAIVAAIALTMRRRPGTKAIDPAQ 176 Query: 179 QLESNPDNSIVMVKVKSG 196 Q+ + MV +KS Sbjct: 177 QVRITRKGRVRMVDMKSE 194 >gi|87200305|ref|YP_497562.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Novosphingobium aromaticivorans DSM 12444] gi|87135986|gb|ABD26728.1| NADH dehydrogenase subunit J [Novosphingobium aromaticivorans DSM 12444] Length = 205 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q FYLF+ + I S + + RNP++SV LI AF NAAGL +L GAEF+AM+ ++VY Sbjct: 2 IQVFAFYLFATLCIFSGAVTILARNPVHSVLWLILAFFNAAGLMVLAGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-----LAAELIVCASNFMVFSA 117 VGAV V FLF++MMLDID + F + + L L+V S + Sbjct: 62 VGAVAVLFLFVVMMLDIDFAELRAGFIKNFPLGMALAVVLFVELFVGLVVRGSGAVALGK 121 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + +N+E+IG +LY++Y + E +G +LL++MIGAIVL R R D + Q++S Sbjct: 122 ADGSAMQAAGASNIESIGALLYSRYLFLFEAAGIVLLVAMIGAIVLTHRQRTDTRGQNVS 181 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 KQ+ P+++ V ++ + GKG+ Sbjct: 182 KQVARRPEDATVNLQPEVGKGV 203 >gi|153871401|ref|ZP_02000582.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Beggiatoa sp. PS] gi|152072135|gb|EDN69420.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Beggiatoa sp. PS] Length = 195 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/194 (36%), Positives = 110/194 (56%), Gaps = 2/194 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FYLF+ + I ++ V+TV+NP+++ L+ AF ++A ++LLL AEF+A+ ++VY Sbjct: 1 MIKFIFYLFALILIFAASRVITVKNPVHAALFLVLAFFSSAAIWLLLQAEFLAIALILVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV+V FLF++MMLDI+ R + +G L +V E++ Sbjct: 61 VGAVMVLFLFVVMMLDINFTQLREGFVRHLPIAGIVGALILLEMVLVVGTWHQVPIPEIA 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 N E +G+VLYT+Y YP EI+ ILL++MI AI L LR RR K Q +Q+ Sbjct: 121 ADALP--NTEALGQVLYTEYVYPFEIAAVILLVAMIAAIALTLRPRRQTKTQKPEQQVNV 178 Query: 183 NPDNSIVMVKVKSG 196 + +VK+ + Sbjct: 179 RRSERVRLVKMPAE 192 >gi|17987432|ref|NP_540066.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 1 str. 16M] gi|17983124|gb|AAL52330.1| NADH-quinone oxidoreductase chain j [Brucella melitensis bv. 1 str. 16M] Length = 189 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 83/189 (43%), Positives = 120/189 (63%), Gaps = 4/189 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF++ Sbjct: 1 MIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVV 60 Query: 75 MMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---NN 130 MMLD+D E+ + +G+ IL ELI ++ M G+ + + N Sbjct: 61 MMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVATRTN 120 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190 +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ I Q+ P+ +I + Sbjct: 121 TAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETAIEI 180 Query: 191 VKVKSGKGI 199 KV++GKGI Sbjct: 181 RKVETGKGI 189 >gi|262277292|ref|ZP_06055085.1| NADH-quinone oxidoreductase, j subunit [alpha proteobacterium HIMB114] gi|262224395|gb|EEY74854.1| NADH-quinone oxidoreductase, j subunit [alpha proteobacterium HIMB114] Length = 206 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 75/202 (37%), Positives = 128/202 (63%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ +L FYLFSF+AI SS V++ +N +++VF LI FV+ + LF+++GAE++ M+TL+ Sbjct: 1 MLAHALVFYLFSFIAISSSLAVISSKNTVHAVFFLILDFVSISCLFIMMGAEYLGMLTLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL---GSFFIGILAAELIVCASNFMVFSA 117 VYVGAV V FLF++MML+++ + + I+ +++ + Sbjct: 61 VYVGAVAVLFLFVVMMLNVNFKDLRTGFLSYLPFGLLIGIVIIIELGMMIGTWKYKDSFI 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + ++ K +N E +G VLYT + + +ISG ILL++MIGAI+L R + ++KRQDI+ Sbjct: 121 KTSEIQISSKVSNTEALGNVLYTDFIHYFQISGIILLVAMIGAILLTFRQKENLKRQDIT 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 KQ+ D+ +++ +V+S KG+ Sbjct: 181 KQVSRERDDGVLLEEVESFKGV 202 >gi|330813991|ref|YP_004358230.1| NADH-ubiquinone oxidoreductase chain J [Candidatus Pelagibacter sp. IMCC9063] gi|327487086|gb|AEA81491.1| NADH-ubiquinone oxidoreductase chain J [Candidatus Pelagibacter sp. IMCC9063] Length = 205 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 73/201 (36%), Positives = 122/201 (60%), Gaps = 2/201 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ S+ FY FSF+ I SS +V+ +N +++VF LI FV+ + LF+++GAEF+ M+TL+ Sbjct: 1 MLAHSIIFYFFSFITIASSLMVIASKNTVHAVFFLILDFVSISSLFIMMGAEFLGMLTLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV V FLF++MM++++ + IG++ + + + Sbjct: 61 VYVGAVAVLFLFVVMMINVNFSELKSGFLEYIPFGLLIGLVILLELGMMIATWKYKPDFV 120 Query: 121 LSRLVF--KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 S + N E++G V+YT Y + ++SGFILL++MIGAIVL R + ++RQDI+ Sbjct: 121 PSNTIINKTITNTESLGLVIYTDYIFFFQLSGFILLVAMIGAIVLTFRRKESLRRQDITT 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q+ +S+ +V+VK +G+ Sbjct: 181 QVSRERTDSVELVEVKHSEGV 201 >gi|152979954|ref|YP_001353161.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille] gi|151280031|gb|ABR88441.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille] Length = 213 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 110/195 (56%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + ++++ V+T NP+++ L+ +F +AA L++LL AEF++++ ++ Sbjct: 1 MEFTTVLFYVFSAILVLAAIRVITESNPVHAALFLVLSFCSAAALWMLLKAEFLSIVLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MM+DI + + IG++ + + + + Sbjct: 61 VYVGAVMVLFLFVVMMVDIKLTKLREGFWGYLPLAATIGVVIVLEMALVLFRGFWRSHTQ 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + N + +GK++YT Y Y EI+ +LL+ MI A+ L +R R+D K + Sbjct: 121 VPEVSANIGNAKELGKLIYTDYLYAFEIAAVLLLVGMIAAVALTMRKRKDSKYFAPGDAV 180 Query: 181 ESNPDNSIVMVKVKS 195 + + +VK+K+ Sbjct: 181 RVKASDRLRVVKMKA 195 >gi|319794659|ref|YP_004156299.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax paradoxus EPS] gi|315597122|gb|ADU38188.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax paradoxus EPS] Length = 221 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 71/196 (36%), Positives = 119/196 (60%), Gaps = 2/196 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FYLF+ + + ++F V+T RNP+Y+ L+ AF A+ ++LLL AEF+A+ ++ Sbjct: 1 MDVKTGLFYLFAAVLLFAAFRVITARNPVYAALYLVLAFFQASAIWLLLRAEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118 VYVGAV+V FLF++MMLDI+++ + F + +G L A V F + A Sbjct: 61 VYVGAVMVLFLFVVMMLDINVDSLRQGFWKHFPLAAGVGALIALEMAAVLMGGFRLGEAP 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 ++ +N +GK+LY++Y YPLEI+ ILL+++I AI L LR R+D K + S Sbjct: 121 RAMAVTSPNTSNTMELGKLLYSEYLYPLEIAAVILLVAIIAAIALTLRTRKDSKYTNPSD 180 Query: 179 QLESNPDNSIVMVKVK 194 Q+ + + +V++ Sbjct: 181 QVRVKARDRVRIVQMP 196 >gi|306843748|ref|ZP_07476347.1| NADH dehydrogenase subunit J [Brucella sp. BO1] gi|306275939|gb|EFM57652.1| NADH dehydrogenase subunit J [Brucella sp. BO1] Length = 205 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 122/190 (64%), Gaps = 4/190 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF+ Sbjct: 16 IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 75 Query: 74 IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---N 129 +MMLD+D E+ + +G+ IL ELI ++ M G+ + + Sbjct: 76 VMMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVATRT 135 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 N +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ IS Q+ P+ +I Sbjct: 136 NTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSISAQVARTPETAIE 195 Query: 190 MVKVKSGKGI 199 + KV++GKGI Sbjct: 196 IRKVETGKGI 205 >gi|153009742|ref|YP_001370957.1| NADH dehydrogenase subunit J [Ochrobactrum anthropi ATCC 49188] gi|151561630|gb|ABS15128.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 123/190 (64%), Gaps = 4/190 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF+ Sbjct: 16 IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 75 Query: 74 IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS---RLVFKGN 129 +MMLD+D E+ + +G+ IL ELI ++ M G+ + + + + Sbjct: 76 VMMLDVDFSELKRGALQYAPVGALVGLILLGELIFVFASNMFAPKLGQGAVPIPNIAERS 135 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 N +G +LYT + + +++G +LL++MIGAIVL LRH+ ++KRQ I Q+ P+ +I Sbjct: 136 NTAALGDILYTDFVFYFQVAGLVLLVAMIGAIVLTLRHKPNVKRQSIPTQVARTPETAIE 195 Query: 190 MVKVKSGKGI 199 + KV++GKGI Sbjct: 196 IKKVETGKGI 205 >gi|289207902|ref|YP_003459968.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thioalkalivibrio sp. K90mix] gi|288943533|gb|ADC71232.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thioalkalivibrio sp. K90mix] Length = 217 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 109/197 (55%), Gaps = 2/197 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FYLF + + + +++VRNP+++ L+ FV AA ++LL AEF+ ++ ++ Sbjct: 1 MTFELILFYLFGAILLGGALAMISVRNPVHAALFLVLCFVAAAAVWLLAEAEFLGIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI++ + + A ++V + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLAKLREGFTEYLPVGIVVAVAMATVLVAV--ITRYITMDV 118 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 R + N E +G +LYT+Y YP EI+ ILL+++I AI L +R R D K D +Q+ Sbjct: 119 PERAGPEYANTEALGAILYTEYVYPFEIAAVILLVAIIAAISLTMRKRPDNKSIDPGQQM 178 Query: 181 ESNPDNSIVMVKVKSGK 197 + + + MV + S K Sbjct: 179 AVSREGRVRMVSMASEK 195 >gi|121593386|ref|YP_985282.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Acidovorax sp. JS42] gi|120605466|gb|ABM41206.1| NADH dehydrogenase subunit J [Acidovorax sp. JS42] Length = 222 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 124/206 (60%), Gaps = 9/206 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLF+ + + ++F V+T RNP+++V LI AF AAG++LLL AEF+A+ ++ Sbjct: 1 MDAKTGFFYLFAVVLLYAAFRVITARNPVHAVLHLILAFSQAAGIWLLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFMVFSAE 118 VY+GAV+V FLF++MMLDI I+ + F + IG + V + F Sbjct: 61 VYLGAVMVLFLFVVMMLDIRIDAVRKGFWKHFPVAALIGAIVTFEMAAVLMTGFRGMEEP 120 Query: 119 GELSRLV-------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 ++ +V +N + +GK+LYT+Y YP+E++ ILL++MI AI L LR R+D Sbjct: 121 KAIADVVVNAAGQAVPYSNTKALGKLLYTEYLYPVEVAAVILLVAMIAAIALTLRQRKDS 180 Query: 172 KRQDISKQLESNPDNSIVMVKVKSGK 197 K D S+Q+ + +VMV++ + Sbjct: 181 KAIDPSEQVRVRARDRLVMVQLPVTQ 206 >gi|241763297|ref|ZP_04761354.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax delafieldii 2AN] gi|241367572|gb|EER61859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax delafieldii 2AN] Length = 222 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 79/201 (39%), Positives = 121/201 (60%), Gaps = 8/201 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+T RNP+++V LI AF AA ++LLL AEF+A++ ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118 VY+GAV+V FLF++MMLDI I+ + F + FIG + A V F Sbjct: 61 VYLGAVMVLFLFVVMMLDIHIDTIRKGFWKHFPLAAFIGAMIALEMAAVLMGGFRGLDEP 120 Query: 119 G------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + V +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR R+D K Sbjct: 121 KAAAVVLDAAGQVVPYSNAKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTK 180 Query: 173 RQDISKQLESNPDNSIVMVKV 193 D S Q+ + + +VK+ Sbjct: 181 AIDPSSQIRVRAKDRLQVVKL 201 >gi|266660|sp|P29922|NQO10_PARDE RecName: Full=NADH-quinone oxidoreductase chain 10; AltName: Full=NADH dehydrogenase I, chain 10; AltName: Full=NDH-1, chain 10 gi|150612|gb|AAA25596.1| NADH dehydrogenase [Paracoccus denitrificans] Length = 200 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 127/200 (63%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FYLF+ A ++ F+VV RNP++SV LI AF++AAGLF+L GAEFVAM+ +VVY Sbjct: 1 MMTFAFYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLD+D + R + IG++ + A + S + E Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTPSDQAESL 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + N +G VLY +Y +++G +LL++MIGAIVL +RHR+D+KRQ++ +Q Sbjct: 121 RAAPVDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVAMIGAIVLTMRHRKDVKRQNVLEQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P ++ + VK G+G+ Sbjct: 181 MWRDPAKTMELKDVKPGQGL 200 >gi|23501698|ref|NP_697825.1| NADH dehydrogenase subunit J [Brucella suis 1330] gi|62289760|ref|YP_221553.1| NADH dehydrogenase subunit J [Brucella abortus bv. 1 str. 9-941] gi|82699688|ref|YP_414262.1| NADH dehydrogenase subunit J [Brucella melitensis biovar Abortus 2308] gi|148559090|ref|YP_001258789.1| NADH dehydrogenase subunit J [Brucella ovis ATCC 25840] gi|161618775|ref|YP_001592662.1| NADH dehydrogenase subunit J [Brucella canis ATCC 23365] gi|163843084|ref|YP_001627488.1| NADH dehydrogenase subunit J [Brucella suis ATCC 23445] gi|189024005|ref|YP_001934773.1| NADH dehydrogenase subunit J [Brucella abortus S19] gi|225852327|ref|YP_002732560.1| NADH dehydrogenase subunit J [Brucella melitensis ATCC 23457] gi|254689067|ref|ZP_05152321.1| NADH dehydrogenase subunit J [Brucella abortus bv. 6 str. 870] gi|254693549|ref|ZP_05155377.1| NADH dehydrogenase subunit J [Brucella abortus bv. 3 str. Tulya] gi|254697201|ref|ZP_05159029.1| NADH dehydrogenase subunit J [Brucella abortus bv. 2 str. 86/8/59] gi|254701579|ref|ZP_05163407.1| NADH dehydrogenase subunit J [Brucella suis bv. 5 str. 513] gi|254704126|ref|ZP_05165954.1| NADH dehydrogenase subunit J [Brucella suis bv. 3 str. 686] gi|254706974|ref|ZP_05168802.1| NADH dehydrogenase subunit J [Brucella pinnipedialis M163/99/10] gi|254709919|ref|ZP_05171730.1| NADH dehydrogenase subunit J [Brucella pinnipedialis B2/94] gi|254713920|ref|ZP_05175731.1| NADH dehydrogenase subunit J [Brucella ceti M644/93/1] gi|254717022|ref|ZP_05178833.1| NADH dehydrogenase subunit J [Brucella ceti M13/05/1] gi|254730097|ref|ZP_05188675.1| NADH dehydrogenase subunit J [Brucella abortus bv. 4 str. 292] gi|256031412|ref|ZP_05445026.1| NADH dehydrogenase subunit J [Brucella pinnipedialis M292/94/1] gi|256044490|ref|ZP_05447394.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 1 str. Rev.1] gi|256060923|ref|ZP_05451081.1| NADH dehydrogenase subunit J [Brucella neotomae 5K33] gi|256113346|ref|ZP_05454204.1| NADH dehydrogenase subunit J [Brucella melitensis bv. 3 str. Ether] gi|256159533|ref|ZP_05457301.1| NADH dehydrogenase subunit J [Brucella ceti M490/95/1] gi|256254820|ref|ZP_05460356.1| NADH dehydrogenase subunit J [Brucella ceti B1/94] gi|256257316|ref|ZP_05462852.1| NADH dehydrogenase subunit J [Brucella abortus bv. 9 str. C68] gi|256264174|ref|ZP_05466706.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis bv. 2 str. 63/9] gi|256369243|ref|YP_003106751.1| NADH dehydrogenase subunit J [Brucella microti CCM 4915] gi|260168546|ref|ZP_05755357.1| NADH dehydrogenase subunit J [Brucella sp. F5/99] gi|260545490|ref|ZP_05821231.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella abortus NCTC 8038] gi|260563844|ref|ZP_05834330.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis bv. 1 str. 16M] gi|260566625|ref|ZP_05837095.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella suis bv. 4 str. 40] gi|260754565|ref|ZP_05866913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 6 str. 870] gi|260757786|ref|ZP_05870134.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 4 str. 292] gi|260761611|ref|ZP_05873954.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 2 str. 86/8/59] gi|260883592|ref|ZP_05895206.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 9 str. C68] gi|261213814|ref|ZP_05928095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 3 str. Tulya] gi|261218829|ref|ZP_05933110.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M13/05/1] gi|261222001|ref|ZP_05936282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti B1/94] gi|261314437|ref|ZP_05953634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis M163/99/10] gi|261317465|ref|ZP_05956662.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis B2/94] gi|261321672|ref|ZP_05960869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M644/93/1] gi|261324923|ref|ZP_05964120.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella neotomae 5K33] gi|261752132|ref|ZP_05995841.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis bv. 5 str. 513] gi|261754792|ref|ZP_05998501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis bv. 3 str. 686] gi|261758019|ref|ZP_06001728.1| NADH dehydrogenase subunit J [Brucella sp. F5/99] gi|265988501|ref|ZP_06101058.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis M292/94/1] gi|265990914|ref|ZP_06103471.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella melitensis bv. 1 str. Rev.1] gi|265994752|ref|ZP_06107309.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella melitensis bv. 3 str. Ether] gi|265997965|ref|ZP_06110522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M490/95/1] gi|294852168|ref|ZP_06792841.1| NADH dehydrogenase I subunit J [Brucella sp. NVSL 07-0026] gi|297248165|ref|ZP_06931883.1| NADH dehydrogenase I subunit J [Brucella abortus bv. 5 str. B3196] gi|23347621|gb|AAN29740.1| NADH dehydrogenase I, J subunit [Brucella suis 1330] gi|62195892|gb|AAX74192.1| NuoJ, NADH dehydrogenase I, J subunit [Brucella abortus bv. 1 str. 9-941] gi|82615789|emb|CAJ10787.1| Photosynthetic reaction centre protein:NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Brucella melitensis biovar Abortus 2308] gi|148370347|gb|ABQ60326.1| NADH dehydrogenase I, J subunit [Brucella ovis ATCC 25840] gi|161335586|gb|ABX61891.1| NADH-quinone oxidoreductase chain J [Brucella canis ATCC 23365] gi|163673807|gb|ABY37918.1| NADH-quinone oxidoreductase chain J [Brucella suis ATCC 23445] gi|189019577|gb|ACD72299.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Brucella abortus S19] gi|225640692|gb|ACO00606.1| NADH-quinone oxidoreductase subunit J [Brucella melitensis ATCC 23457] gi|255999403|gb|ACU47802.1| NADH dehydrogenase subunit J [Brucella microti CCM 4915] gi|260096897|gb|EEW80772.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella abortus NCTC 8038] gi|260153860|gb|EEW88952.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis bv. 1 str. 16M] gi|260156143|gb|EEW91223.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella suis bv. 4 str. 40] gi|260668104|gb|EEX55044.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 4 str. 292] gi|260672043|gb|EEX58864.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 2 str. 86/8/59] gi|260674673|gb|EEX61494.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 6 str. 870] gi|260873120|gb|EEX80189.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 9 str. C68] gi|260915421|gb|EEX82282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella abortus bv. 3 str. Tulya] gi|260920585|gb|EEX87238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti B1/94] gi|260923918|gb|EEX90486.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M13/05/1] gi|261294362|gb|EEX97858.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M644/93/1] gi|261296688|gb|EEY00185.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis B2/94] gi|261300903|gb|EEY04400.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella neotomae 5K33] gi|261303463|gb|EEY06960.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis M163/99/10] gi|261738003|gb|EEY25999.1| NADH dehydrogenase subunit J [Brucella sp. F5/99] gi|261741885|gb|EEY29811.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis bv. 5 str. 513] gi|261744545|gb|EEY32471.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella suis bv. 3 str. 686] gi|262552433|gb|EEZ08423.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella ceti M490/95/1] gi|262765865|gb|EEZ11654.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella melitensis bv. 3 str. Ether] gi|263001698|gb|EEZ14273.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella melitensis bv. 1 str. Rev.1] gi|263094392|gb|EEZ18237.1| NADH-ubiquinone/plastoquinone oxidoreductase [Brucella melitensis bv. 2 str. 63/9] gi|264660698|gb|EEZ30959.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella pinnipedialis M292/94/1] gi|294820757|gb|EFG37756.1| NADH dehydrogenase I subunit J [Brucella sp. NVSL 07-0026] gi|297175334|gb|EFH34681.1| NADH dehydrogenase I subunit J [Brucella abortus bv. 5 str. B3196] gi|326408834|gb|ADZ65899.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Brucella melitensis M28] gi|326538550|gb|ADZ86765.1| NADH-quinone oxidoreductase subunit J [Brucella melitensis M5-90] Length = 205 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 121/190 (63%), Gaps = 4/190 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF+ Sbjct: 16 IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 75 Query: 74 IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---N 129 +MMLD+D E+ + +G+ IL ELI ++ M G+ + + Sbjct: 76 VMMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVATRT 135 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 N +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ I Q+ P+ +I Sbjct: 136 NTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETAIE 195 Query: 190 MVKVKSGKGI 199 + KV++GKGI Sbjct: 196 IRKVETGKGI 205 >gi|160900603|ref|YP_001566185.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Delftia acidovorans SPH-1] gi|160366187|gb|ABX37800.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Delftia acidovorans SPH-1] Length = 222 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 79/202 (39%), Positives = 123/202 (60%), Gaps = 8/202 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F VVT RNP+++V +LI AF AAG++LLL AEF+ + ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVVTARNPVHAVLNLILAFSQAAGIWLLLKAEFLGVTLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA--ELIVCASNFM----- 113 VY+GAV+V FLF++MMLDI I+ + F + IG L A +V F Sbjct: 61 VYLGAVMVLFLFVVMMLDIRIDAVRQGFWKHFPFAALIGALIAFEMGMVLMGGFSGVEEP 120 Query: 114 -VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +A + + +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR R+D K Sbjct: 121 KAIAATVNAAGQTVQYSNTQALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRKRKDSK 180 Query: 173 RQDISKQLESNPDNSIVMVKVK 194 + ++Q+ + + +VKV Sbjct: 181 AVNPAQQIRVRAKDRLELVKVP 202 >gi|157964938|ref|YP_001499762.1| NADH dehydrogenase subunit J [Rickettsia massiliae MTU5] gi|157844714|gb|ABV85215.1| NADH dehydrogenase I chain J [Rickettsia massiliae MTU5] Length = 208 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V Sbjct: 1 MNTMPIFFYLFATLITISSLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSA 117 +YVGAV V FLF+IMMLD+ + K S I ++ +I+ + Sbjct: 61 IYVGAVAVLFLFVIMMLDMHFNKTITQLKENLALSILIALIMFADLVIIILLGTKNINFN 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + +N + IG VLYT + P +++G IL ++MI I L L+ R +KRQDIS Sbjct: 121 SNVSFAITNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDIS 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 KQL N +N+++M K KG+ Sbjct: 181 KQLRHNKENTVLMTKPILNKGV 202 >gi|257095310|ref|YP_003168951.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047834|gb|ACV37022.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 200 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 62/198 (31%), Positives = 117/198 (59%), Gaps = 1/198 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY S + + + V+T RNP+++ L+ AF A+G+++LL AEF+AM ++ Sbjct: 1 MEFKTFVFYFLSAILVFAGLRVITARNPVHAALFLVLAFFTASGVWILLQAEFLAMALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLDI+++ + E LGS ++ AE+ + + E Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDRLREGFWSYLPLGSIIALLMVAEMGLVLGGNYLGLFES 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + +NV+ +G++++T+Y YP E++ ILL+ ++ A+ L R +R K + S+Q Sbjct: 121 SVRQTGADESNVQAVGRLMFTEYVYPFELASVILLVGIVAAVALTQRGKRKNKAVNPSQQ 180 Query: 180 LESNPDNSIVMVKVKSGK 197 + + ++++ + K Sbjct: 181 VFVKAGERVRVLQMPAEK 198 >gi|92117734|ref|YP_577463.1| NADH dehydrogenase subunit J [Nitrobacter hamburgensis X14] gi|91800628|gb|ABE63003.1| NADH dehydrogenase subunit J [Nitrobacter hamburgensis X14] Length = 212 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 136/202 (67%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +LFFYLF+ + + S+ +V++ RNP++SV LI AFVNAAGLF+L+GAEF+AMI +V Sbjct: 1 MILPALFFYLFAGVCVASAAMVISSRNPVHSVLFLILAFVNAAGLFILMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--A 117 VYVGAV V FLF+IMMLD++ E+ E + LG I EL++ + + Sbjct: 61 VYVGAVAVLFLFVIMMLDVNFAELREGFLEYLPLGLVIAAIFLLELLLVVGGWTLNPTVT 120 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + + +N E IG VLYT+Y + +++G +LL++M+GAIVL LRHR +KRQDI+ Sbjct: 121 KSITAAIPGDVSNTEAIGLVLYTKYIHYFQLAGMVLLVAMVGAIVLTLRHRASVKRQDIN 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q P+ ++ + KV SG+G+ Sbjct: 181 VQNARTPEMAMSVRKVASGRGL 202 >gi|119384967|ref|YP_916023.1| NADH dehydrogenase subunit J [Paracoccus denitrificans PD1222] gi|119374734|gb|ABL70327.1| NADH dehydrogenase subunit J [Paracoccus denitrificans PD1222] Length = 199 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 81/198 (40%), Positives = 126/198 (63%), Gaps = 3/198 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FYLF+ A ++ F+VV RNP++SV LI AF++AAGLF+L GAEFVAM+ +VVYVG Sbjct: 2 TFAFYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE---L 121 AV V FLF++MMLD+D + R + IG++ + A + S + E Sbjct: 62 AVAVLFLFVVMMLDVDFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTPSDQAESLRA 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + + N +G VLY +Y +++G +LL++MIGAIVL +RHR+D+KRQ++ +Q+ Sbjct: 122 APVDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVAMIGAIVLTMRHRKDVKRQNVLEQMW 181 Query: 182 SNPDNSIVMVKVKSGKGI 199 +P ++ + VK G+G+ Sbjct: 182 RDPAKTMELKDVKPGQGL 199 >gi|239946839|ref|ZP_04698592.1| NADH-quinone oxidoreductase subunit J [Rickettsia endosymbiont of Ixodes scapularis] gi|239921115|gb|EER21139.1| NADH-quinone oxidoreductase subunit J [Rickettsia endosymbiont of Ixodes scapularis] Length = 205 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 123/198 (62%), Gaps = 5/198 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + IS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISGLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL----AAELIVCASNFMVFSAEGEL 121 V V FLF+IMMLD+ + K S FI ++ +I+ + + FS++ Sbjct: 63 VAVLFLFVIMMLDMHFNKTITQLKENLALSIFIALIMFADLVTVILLGTKNINFSSDISF 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + + +N + IG VLYT + P +++G IL ++MI I L L+ R +KRQDISKQL Sbjct: 123 A-ITNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLR 181 Query: 182 SNPDNSIVMVKVKSGKGI 199 N +N+++M K KG+ Sbjct: 182 HNKENTVLMTKPILNKGV 199 >gi|209964541|ref|YP_002297456.1| NADH-quinone oxidoreductase chain J [Rhodospirillum centenum SW] gi|209958007|gb|ACI98643.1| NADH-quinone oxidoreductase chain J [Rhodospirillum centenum SW] Length = 204 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 128/204 (62%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ + FY+F+ + + + +VV+ RNP++SV LI AF NAA LFLL+GAEF+AMI ++ Sbjct: 1 MVLSAAAFYVFAAILLAAGVMVVSARNPVHSVLYLIVAFFNAAVLFLLIGAEFIAMILII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV----F 115 VYVGAV V FLF++MMLDI + ++ IG IL AEL + ++ V Sbjct: 61 VYVGAVAVLFLFVVMMLDISFQEIRRTYRQYVPLGALIGTILMAELALVTVSWAVAPDAA 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 ++ + NN E +G+VLYT Y + ++SG ILL++MIGAIVL LR R ++RQ Sbjct: 121 ASLAAPTPADTAVNNTEALGQVLYTHYVFAFQVSGLILLVAMIGAIVLTLRSRGGLRRQV 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I++Q+ P+ + + KV + G+ Sbjct: 181 IAQQIRRRPEEVLSVRKVPTRGGV 204 >gi|114797370|ref|YP_760458.1| NADH-quinone oxidoreductase subunit J [Hyphomonas neptunium ATCC 15444] gi|114737544|gb|ABI75669.1| NADH-quinone oxidoreductase, J subunit [Hyphomonas neptunium ATCC 15444] Length = 197 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 118/197 (59%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L + + ++++ V+ RNP++SV LI F +AAGL +L+GAEF+AM+ +VVY Sbjct: 1 MALIAFSLIAAIVVLAAMFVIAARNPVHSVLWLILTFFSAAGLLVLIGAEFLAMLLVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V FLF++MMLD+D + R + + +G++ + S EG ++ Sbjct: 61 VGAVAVLFLFVVMMLDVDFVELKQGTLRYWPFALLVGVILLAELALVSVAGDAIPEGNMN 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 N E IG V+YT Y ++SG +LL++M+GAIVL LRHR IKRQDI+KQ Sbjct: 121 ASPNAPTNAEAIGYVMYTDYLLLFQLSGIVLLIAMVGAIVLTLRHRPHIKRQDIAKQTGR 180 Query: 183 NPDNSIVMVKVKSGKGI 199 +++ + G+GI Sbjct: 181 RRVDAVDLKDPTPGQGI 197 >gi|124266605|ref|YP_001020609.1| NADH-ubiquinone oxidoreductase, subunit J [Methylibium petroleiphilum PM1] gi|124259380|gb|ABM94374.1| NADH-ubiquinone oxidoreductase, chain J [Methylibium petroleiphilum PM1] Length = 215 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 70/195 (35%), Positives = 117/195 (60%), Gaps = 1/195 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +S FY+FS + + +SF V+T R+ +Y+ L+ AF NAA +++LL AEF+A+ ++ Sbjct: 1 MNTESALFYVFSAILLFASFRVITARSAVYAALYLVLAFFNAACVWMLLEAEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLD + + + F + IG ++AAE+I Sbjct: 61 VYVGAVMVLFLFVVMMLDANADTVRKGFWQLFPVAGTIGAVIAAEMIWVLRRGFDLPEAP 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L + + N + +G +YT Y YPL+I+ +LL+++I AI L LR R+D K D S Q Sbjct: 121 PLDAVAAQMGNTKLLGIEIYTHYLYPLQIAAVLLLVAIIAAIALTLRKRKDSKYVDPSAQ 180 Query: 180 LESNPDNSIVMVKVK 194 ++ + + +V+++ Sbjct: 181 VKVRKADRVRIVQMQ 195 >gi|88812967|ref|ZP_01128210.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrococcus mobilis Nb-231] gi|88789745|gb|EAR20869.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrococcus mobilis Nb-231] Length = 202 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 118/199 (59%), Gaps = 4/199 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ L FY+F+ + + ++ +V+T +NP++S L+ AF N+A L+L+ AEF+ + ++VY Sbjct: 2 IELLLFYVFAAVLLFAATMVITAKNPVHSALFLVLAFFNSAALWLMAEAEFLGIALVLVY 61 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAE 118 VGAV+V FLF++MMLDI++ + E + +G+ ++ E+ + + ++ Sbjct: 62 VGAVMVLFLFVVMMLDINLAPMREGFARYLPIGALVGCVMVVEMALVVGSKDVNLIHGGP 121 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + +N + +G VLYT YAYP EI+ +LL++++ AI+L R R K+Q+I + Sbjct: 122 VTSAAEGVGMSNTKALGSVLYTVYAYPFEIASVVLLVAIVAAIMLTHRRRPGTKQQNIDR 181 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ + + +V + K Sbjct: 182 QVRVRKEQRLRIVTMAPEK 200 >gi|238028134|ref|YP_002912365.1| NADH dehydrogenase subunit J [Burkholderia glumae BGR1] gi|237877328|gb|ACR29661.1| Hypothetical protein bglu_1g25850 [Burkholderia glumae BGR1] Length = 220 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 123/205 (60%), Gaps = 12/205 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + +IS+ V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVISALKVITARNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V +R + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINVDVLRRDFRRFVPMATVVG----AIIVVETALILWRGYGA 116 Query: 121 LSRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + V +N IGKV+YT Y + EI+G +LL+++I A+ L + K Sbjct: 117 TASPVRDVASGALANMSNTRLIGKVIYTDYIFAFEIAGLVLLVAIIAAVSLTAGKGKYRK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 RQ++S+Q+ ++ + +VK+ + K Sbjct: 177 RQNVSEQIRVRREDRVRLVKMAAEK 201 >gi|197105258|ref|YP_002130635.1| NADH dehydrogenase I, J subunit [Phenylobacterium zucineum HLK1] gi|196478678|gb|ACG78206.1| NADH dehydrogenase I, J subunit [Phenylobacterium zucineum HLK1] Length = 207 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 85/205 (41%), Positives = 130/205 (63%), Gaps = 6/205 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYL + + + + F VV+ RNP++SV LI AF +AAGLF+L+GAEF+AM+ +V Sbjct: 1 MALQAIAFYLMAAVTVSAGFGVVSARNPVHSVLWLILAFFSAAGLFVLMGAEFLAMLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D + + + +G +LA E+IV ++ A Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFTALRQGFARYMPVGLLIAAVLAVEMIVVSTTVATRGAAR 120 Query: 120 ELSRLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + G N E IG+VLYT Y Y + +G +LL++MIGAIVL LRH+ +KRQ Sbjct: 121 ANETPMAAGQGADVTNAEAIGRVLYTDYVYFFQAAGLVLLVAMIGAIVLTLRHKPGVKRQ 180 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 ++ Q+ +P + +V +K G+G+ Sbjct: 181 LVADQVLRSPKTGMRVVSLKPGEGV 205 >gi|332185920|ref|ZP_08387667.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Sphingomonas sp. S17] gi|332014278|gb|EGI56336.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Sphingomonas sp. S17] Length = 203 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 73/200 (36%), Positives = 118/200 (59%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++ FY+F+ + I+S+ L + RNP++SV LI AF NAAGL +L GAEF+AM+ ++VY Sbjct: 2 IQAIAFYIFATVVIVSAGLTIASRNPVHSVMWLILAFFNAAGLMVLCGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA---EG 119 VGAV V FLF++MMLDI++ R + + ++ A Sbjct: 62 VGAVAVLFLFVVMMLDIEVAAMRAGFARYLPLGLALAVALLAEVIIAFQAWSVGGVQLAA 121 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + + +N++ IG +LYT+Y + E +G +LL++MIGAIVL R R ++ Q+I+KQ Sbjct: 122 RAAPIAPEVSNIQAIGNLLYTRYLFIFEGAGLVLLVAMIGAIVLTHRKRGGVRPQNIAKQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 P +I + G+G+ Sbjct: 182 NARQPHEAIRNINQPIGQGV 201 >gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana) tropicalis] Length = 1458 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 68/174 (39%), Positives = 104/174 (59%), Gaps = 16/174 (9%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+ RNP+++V SLI AF AAG++LLL AEF+ + ++ Sbjct: 1277 MDAKTGFFYLFSVVLLFAAFRVIMARNPVHAVLSLILAFSQAAGIWLLLKAEFLGITLVL 1336 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------ 114 VY+GAV+V FLF++MMLDI I+ ++GF F + L +I ++ Sbjct: 1337 VYLGAVMVLFLFVVMMLDIRIDSV----RQGFWKHFPLAALVGAIITFEMALVLMDGFRS 1392 Query: 115 ------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 SA + + +N +GK+LYTQY YP+EI+ ILL++MI AI Sbjct: 1393 IDEPKAISAVVDAAGQAVPYSNTRVLGKLLYTQYLYPVEIAAVILLVAMIAAIT 1446 >gi|91204900|ref|YP_537255.1| NADH dehydrogenase subunit J [Rickettsia bellii RML369-C] gi|157827775|ref|YP_001496839.1| NADH dehydrogenase subunit J [Rickettsia bellii OSU 85-389] gi|122426098|sp|Q1RKE8|NUOJ_RICBR RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|91068444|gb|ABE04166.1| NADH dehydrogenase I chain J [Rickettsia bellii RML369-C] gi|157803079|gb|ABV79802.1| NADH dehydrogenase subunit J [Rickettsia bellii OSU 85-389] Length = 205 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 124/197 (62%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + IISS VV +N +YSV LIFAF+N +GL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFAFINGSGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122 V V FLF+IMMLD+ A + K + S F+ ++ +I+ + + Sbjct: 63 VAVLFLFVIMMLDMHFNKAIMQLKEKPILSIFVSLIMFADLVVIILLGTKNIHFSSDLSF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N + IGK+LYT + P +I+G IL ++MIG I L LR R +KRQ+I+KQL Sbjct: 123 AIASDVSNTKAIGKILYTDFMIPFQIAGLILFVAMIGCITLTLRKRDGVKRQNIAKQLSH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N +N+++M K KGI Sbjct: 183 NKENAVLMTKPLINKGI 199 >gi|81176537|ref|YP_398421.1| nad6 [Triticum aestivum] gi|400642|sp|Q02500|NU6M_WHEAT RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|21826|emb|CAA44009.1| NADH dehydrogenase (ubiquinone) [Triticum aestivum] gi|78675261|dbj|BAE47686.1| nad6 [Triticum aestivum] gi|169649070|gb|ACA62631.1| nad6 [Triticum aestivum] Length = 247 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 11/188 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ + S A++S +VV +NP++SV I F + +GL +LLG +F AMI+ VV++G Sbjct: 18 TMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHIG 77 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSR 123 A+ V FLF++MM +I I R S IG I E+ N + + Sbjct: 78 AIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNT 137 Query: 124 L----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KR Sbjct: 138 TSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKR 197 Query: 174 QDISKQLE 181 QD+ ++ Sbjct: 198 QDVFRRNA 205 >gi|254718920|ref|ZP_05180731.1| NADH dehydrogenase subunit J [Brucella sp. 83/13] gi|265983907|ref|ZP_06096642.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella sp. 83/13] gi|306838232|ref|ZP_07471084.1| NADH dehydrogenase subunit J [Brucella sp. NF 2653] gi|264662499|gb|EEZ32760.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brucella sp. 83/13] gi|306406676|gb|EFM62903.1| NADH dehydrogenase subunit J [Brucella sp. NF 2653] Length = 205 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 120/190 (63%), Gaps = 4/190 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + I S+F+V+ RNP++SV LI F NAA LFLL GAEF+AMI LVVYVGAV V FLF+ Sbjct: 16 IMIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFV 75 Query: 74 IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---N 129 +MMLD+D E+ + +G+ IL ELI ++ M G+ + + Sbjct: 76 VMMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVATRT 135 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 N +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ I Q+ P+ +I Sbjct: 136 NTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETAIE 195 Query: 190 MVKVKSGKGI 199 + KV+ GKGI Sbjct: 196 IRKVEMGKGI 205 >gi|198284337|ref|YP_002220658.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666659|ref|YP_002426999.1| NADH-quinone oxidoreductase, J subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248858|gb|ACH84451.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518872|gb|ACK79458.1| NADH-quinone oxidoreductase, J subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 198 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 71/192 (36%), Positives = 111/192 (57%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + ++ FY+FS + + S+ LV+T RNP+Y+ L+ AF NAA LF+LLGAEF+ +I ++VY Sbjct: 4 VTTILFYIFSAILLGSATLVITARNPVYATLYLVLAFFNAAALFILLGAEFLGLILILVY 63 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV+V FLF++MMLDI++ + I IL + + Sbjct: 64 VGAVMVLFLFVVMMLDINLARIKEGFLSYLPLGLAIAILGVLELAVVFWTSSLGHIPAPA 123 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 L +N +G +LYT+Y YP EI+ ILL+++I AI L LR R K Q+I+ Q+ Sbjct: 124 ALPADTDNTRALGILLYTKYLYPFEIAAVILLVAIIAAIALTLRRRTGTKTQNIAAQMAV 183 Query: 183 NPDNSIVMVKVK 194 + + +V ++ Sbjct: 184 RAKDRVQLVDLR 195 >gi|71906597|ref|YP_284184.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Dechloromonas aromatica RCB] gi|71846218|gb|AAZ45714.1| NADH dehydrogenase subunit J [Dechloromonas aromatica RCB] Length = 198 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 105/197 (53%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q+ FY S + + +S V+T RNP+++ LI AF G++ LL AEF+A+ ++ Sbjct: 1 MDFQTAVFYFLSAILVFASLRVITARNPVHAALHLILAFFTCGGIWALLQAEFLAIAIIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+ +G+L + F Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDRIREGFWNYLPLGALLGLLMVMEMGLVLGSKYFQVPAA 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + +N + IG ++++ Y YP E++ ILL+ MI AIVL R + K + ++Q+ Sbjct: 121 EAMVPAGVSNTKAIGALMFSDYVYPFELASLILLVGMIAAIVLTYRGPKKSKYTNPNQQV 180 Query: 181 ESNPDNSIVMVKVKSGK 197 + + ++++ K Sbjct: 181 FVKAKDRVRVLQMPVEK 197 >gi|229587152|ref|YP_002845653.1| NADH dehydrogenase subunit J [Rickettsia africae ESF-5] gi|228022202|gb|ACP53910.1| NADH dehydrogenase I chain J [Rickettsia africae ESF-5] Length = 205 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122 V V FLF+IMMLD+ + K S FI ++ +I+ + Sbjct: 63 VAVLFLFVIMMLDMHFNKKITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N + IG VLYT + P +++G IL ++MI I L L+ R +KRQDISKQL Sbjct: 123 TITNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLRH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N +N+++M K KG+ Sbjct: 183 NKENTVLMTKPILNKGV 199 >gi|254501714|ref|ZP_05113865.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Labrenzia alexandrii DFL-11] gi|222437785|gb|EEE44464.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Labrenzia alexandrii DFL-11] Length = 204 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 89/204 (43%), Positives = 142/204 (69%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++++LFFYLF+ + + S+F+V+ RNP+ SV LI AFVN+AGLF+LLGAE++A++ +V Sbjct: 1 MILKALFFYLFAGVTVASAFMVIAARNPVTSVLFLILAFVNSAGLFILLGAEYLALLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF---- 115 VYVGAV V FLF++MMLD+D +E+ + + +G IL EL++ +++ Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGGLVGLILLVELLMGFGAWVILPELT 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + E + + + N+E +G VLYT+Y Y +++G ILL++MIGAIVL LRH+ ++KRQD Sbjct: 121 ANTVEPTPPLTEMTNIEALGSVLYTKYIYFFQVAGLILLVAMIGAIVLTLRHKPNVKRQD 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I Q+ + ++ + KV++GKGI Sbjct: 181 IPTQVGRTREAAVEVRKVETGKGI 204 >gi|85374151|ref|YP_458213.1| NADH dehydrogenase I, J subunit [Erythrobacter litoralis HTCC2594] gi|84787234|gb|ABC63416.1| NADH dehydrogenase I, J subunit [Erythrobacter litoralis HTCC2594] Length = 206 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 77/203 (37%), Positives = 119/203 (58%), Gaps = 6/203 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q+ FYLF+ + I S L + RNP++SV LI AF NAAGL +LLGAEF+AM+ ++VY Sbjct: 2 IQAFAFYLFAALMIASGVLTIMSRNPVHSVLWLILAFFNAAGLMVLLGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA-----SNFMVFSA 117 VGAV V FLF++MMLDID + F I ++ +V + + Sbjct: 62 VGAVAVLFLFVVMMLDIDFAELRAGFIKNFPLGIAIALVLLAELVLGIGAYRAGIVELGT 121 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK-RQDI 176 + + N+E++G ++Y +Y + E +G ILL++MIGAIVL R ++ + Q+I Sbjct: 122 PDGSAAPLVGETNIESLGALMYGKYLFLFEGAGLILLVAMIGAIVLTHRDLKNTRGHQNI 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 KQ+ P+ + VM + + GKG+ Sbjct: 182 GKQVSRRPEEATVMKQPEIGKGV 204 >gi|120609959|ref|YP_969637.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Acidovorax citrulli AAC00-1] gi|120588423|gb|ABM31863.1| NADH dehydrogenase subunit J [Acidovorax citrulli AAC00-1] Length = 222 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 81/205 (39%), Positives = 125/205 (60%), Gaps = 8/205 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+T RNP+++V LI AF AA ++LLL AEF+A+ L+ Sbjct: 1 MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113 VY+GAV+V FLF++MMLDI I+ R F + FIG L A + Sbjct: 61 VYLGAVMVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEP 120 Query: 114 -VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +A + + V + +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR R+D K Sbjct: 121 KAVAAMVDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTK 180 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 +S+Q+ + + +VKV + + Sbjct: 181 VTKVSEQVRVRAADRVELVKVAATQ 205 >gi|89900295|ref|YP_522766.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rhodoferax ferrireducens T118] gi|89345032|gb|ABD69235.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodoferax ferrireducens T118] Length = 219 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 5/202 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FFY FS + + ++F V+T RNP+Y+V L+ AF AA ++LLL AEF+A+ ++ Sbjct: 1 MDVKTGFFYFFSIVLLFAAFRVITSRNPVYAVLYLVLAFFQAAAIWLLLRAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118 VYVGAV+V FLF++MMLDI ++ + F + +G+ A V F V Sbjct: 61 VYVGAVMVLFLFVVMMLDIKVDGLREGFWKHFPLAATVGVFIALEMAAVLMGGFRVGDEP 120 Query: 119 GE---LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 L + + +N +GKVLY QY YPLEI+G ILL++MI AI L LR R+D K+ Sbjct: 121 QSAVALGQASAEFSNTRELGKVLYGQYVYPLEIAGAILLVAMIAAIALTLRQRKDSKQVS 180 Query: 176 ISKQLESNPDNSIVMVKVKSGK 197 S Q+ + + ++K+ S K Sbjct: 181 PSMQVRVKARDRMTVLKMASTK 202 >gi|85708743|ref|ZP_01039809.1| NADH dehydrogenase subunit J [Erythrobacter sp. NAP1] gi|85690277|gb|EAQ30280.1| NADH dehydrogenase subunit J [Erythrobacter sp. NAP1] Length = 207 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 78/204 (38%), Positives = 115/204 (56%), Gaps = 7/204 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q L FYLF+ + I S+ +V+ RNP++SV LI +F NAAGL +L+GAEF+AM+ ++VY Sbjct: 2 IQVLAFYLFAGLVIASAVMVIMARNPVHSVLWLILSFFNAAGLMVLVGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-----FSA 117 VGAV V FLF++MMLDID + F + ++ + Sbjct: 62 VGAVAVLFLFVVMMLDIDFAAMRAGFIKNFPLGIAVALILLAELFLGLGAYGAGGIELGT 121 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR--DIKRQD 175 + +N++ IG +LY +Y EI+G ILL++MIGAIVL R + RQD Sbjct: 122 PDGTAAERGDVSNIQAIGALLYGRYIVLFEIAGIILLVAMIGAIVLTHREAKPGARGRQD 181 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I KQ+ P+ + VM + GKG+ Sbjct: 182 IGKQIRRRPEEATVMKNPEYGKGV 205 >gi|15893147|ref|NP_360861.1| NADH dehydrogenase subunit J [Rickettsia conorii str. Malish 7] gi|238650810|ref|YP_002916665.1| NADH dehydrogenase subunit J [Rickettsia peacockii str. Rustic] gi|20139034|sp|Q92G99|NUOJ_RICCN RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|15620356|gb|AAL03762.1| NADH dehydrogenase I chain J [Rickettsia conorii str. Malish 7] gi|238624908|gb|ACR47614.1| NADH dehydrogenase subunit J [Rickettsia peacockii str. Rustic] Length = 205 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122 V V FLF+IMMLD+ + K S FI ++ +I+ + Sbjct: 63 VAVLFLFVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N + IG VLYT + P +++G IL ++MI I L L+ R +KRQDISKQL Sbjct: 123 TITNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLRH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N +N+++M K KG+ Sbjct: 183 NKENTVLMTKPILNKGV 199 >gi|315499799|ref|YP_004088602.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Asticcacaulis excentricus CB 48] gi|315417811|gb|ADU14451.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Asticcacaulis excentricus CB 48] Length = 202 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 126/200 (63%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ FY+ + + ++S LV+T RNP++SV LI AF +AAGLF+L+GAEF+AM+ +VVY Sbjct: 1 MLAIAFYILAAVTVVSGALVITARNPVHSVLFLILAFFSAAGLFVLMGAEFLAMLLVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V FLF++MMLD+D +GIL ++ S+ + Sbjct: 61 VGAVAVLFLFVVMMLDVDFTKLRQGFANYLPIGMVVGILLLIELIMISSAVAQRGAAAGQ 120 Query: 123 RLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 G +N+E IG+VLYT Y Y + SG +LL++MIGAIVL L+HR +KRQDI Q Sbjct: 121 SPQVYGAEMSNIEAIGRVLYTDYVYVFQASGLVLLVAMIGAIVLTLQHRTYVKRQDIHTQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +++ +VKVK+G+GI Sbjct: 181 VTRRRKDAVAIVKVKTGEGI 200 >gi|315122716|ref|YP_004063205.1| NADH dehydrogenase subunit J [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496118|gb|ADR52717.1| NADH dehydrogenase subunit J [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 148 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 115/144 (79%), Positives = 130/144 (90%) Query: 56 MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 MITLVVYVGAVIV FLFIIMMLDID+E A+PR+ R FLG+FFIGILAAEL VCASN +VF Sbjct: 1 MITLVVYVGAVIVLFLFIIMMLDIDVEEAKPRRNRPFLGAFFIGILAAELFVCASNLLVF 60 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 EGE+SRLVF+GNN E+IG+VLYT+Y YPLEISGFILLLSMIGAIVLMLRHR IKRQ+ Sbjct: 61 GLEGEVSRLVFRGNNTEDIGEVLYTKYIYPLEISGFILLLSMIGAIVLMLRHRPGIKRQN 120 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 ISKQL+SNP NS+ +VKVKSG+GI Sbjct: 121 ISKQLKSNPGNSVTVVKVKSGEGI 144 >gi|34581183|ref|ZP_00142663.1| NADH dehydrogenase I chain J [Rickettsia sibirica 246] gi|28262568|gb|EAA26072.1| NADH dehydrogenase I chain J [Rickettsia sibirica 246] Length = 205 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122 V V FLF+IMMLD+ + K S FI ++ +I+ + Sbjct: 63 VAVLFLFVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N + IG +LYT + P +++G IL ++MI I L L+ R +KRQDISKQL Sbjct: 123 TITNNISNTKAIGGILYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLRH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N +N+++M K KG+ Sbjct: 183 NKENTVLMTKPILNKGV 199 >gi|330817783|ref|YP_004361488.1| hypothetical protein bgla_1g29200 [Burkholderia gladioli BSR3] gi|327370176|gb|AEA61532.1| hypothetical protein bgla_1g29200 [Burkholderia gladioli BSR3] Length = 220 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 71/201 (35%), Positives = 117/201 (58%), Gaps = 12/201 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + +IS V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFSLLLVISGLKVITARNPVASALFLVLAFFNAAAIWMLLEAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+ +V +R + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINTDVLRRDFRRFVPMATVVG----AIIVVETALILWRGYGA 116 Query: 121 LSRLV--------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 S V N + IGKV+YT Y + EI+G +LL+++I A+ L ++ K Sbjct: 117 TSSPVREIASGALANMTNTQLIGKVIYTDYIFAFEIAGLVLLVAIIAAVSLTSGRGKERK 176 Query: 173 RQDISKQLESNPDNSIVMVKV 193 RQ +S Q+ + + +VK+ Sbjct: 177 RQRVSDQVSVRRQDRVRLVKM 197 >gi|319408588|emb|CBI82243.1| NADH dehydrogenase I chain J [Bartonella schoenbuchensis R1] Length = 190 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 80/190 (42%), Positives = 116/190 (61%), Gaps = 5/190 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 ++S+ VV RNP++SV LI AF NAA LF+LLGAEF+ +I LVVYVGAV V FLF++ Sbjct: 1 MLVSAVTVVAARNPVHSVLFLILAFFNAAALFVLLGAEFLGLILLVVYVGAVAVLFLFVV 60 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-----GELSRLVFKGN 129 MMLD+D + R FIG++ ++ FS + + + Sbjct: 61 MMLDVDFAELKSGVLRYIPVGAFIGVVIVVELISVFISSHFSPVLRSYVTQPMPDLAQRT 120 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 N + +G +LYT Y + +I+G ILL++MIGAIVL LRH+ +KRQ I+ Q+ ++I Sbjct: 121 NTQALGDILYTDYIFYFQIAGMILLVAMIGAIVLTLRHKSGVKRQSIAVQVARTAKSAIE 180 Query: 190 MVKVKSGKGI 199 + +V+SGKGI Sbjct: 181 IKQVESGKGI 190 >gi|149184626|ref|ZP_01862944.1| NADH dehydrogenase I, J subunit [Erythrobacter sp. SD-21] gi|148831946|gb|EDL50379.1| NADH dehydrogenase I, J subunit [Erythrobacter sp. SD-21] Length = 206 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 81/203 (39%), Positives = 117/203 (57%), Gaps = 6/203 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++ FY+F+ + I S+ +V+T RNP++SV LI AF NAAGL +L+GAEF+AM+ ++VY Sbjct: 2 IQTIAFYMFAVLVIASAVMVITARNPVHSVLWLILAFFNAAGLMVLVGAEFIAMLLVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA-----SNFMVFSA 117 VGAV V FLF++MMLDIDI + I ++ +V M Sbjct: 62 VGAVAVLFLFVVMMLDIDIAAMRAGFVKNAPLGLVIALVLLAELVLGVGAYRVGVMELGT 121 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK-RQDI 176 +N IG +LYT+Y + E +G ILL++MIGAIVL R + + QDI Sbjct: 122 PMASEAPAMMESNTGAIGALLYTKYLFLFEAAGIILLVAMIGAIVLTHRPPKTTRGHQDI 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 KQ NPD + VM + G+G+ Sbjct: 182 GKQNRRNPDEATVMKQPIVGEGV 204 >gi|11466532|ref|NP_044781.1| NADH dehydrogenase subunit 6 [Reclinomonas americana] gi|2258362|gb|AAD11896.1| NADH dehydrogenase subunit 6 [Reclinomonas americana] Length = 205 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 75/203 (36%), Positives = 116/203 (57%), Gaps = 11/203 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ + FY FSF+A+ S+ LV+ NPI+SV L+ F + +GLF+L+ AEF+AMI ++ Sbjct: 1 MTVE-ILFYFFSFLALSSATLVIASSNPIHSVLFLVLVFCSTSGLFILIEAEFIAMIFIM 59 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA----------ELIVCAS 110 VYVGA+ V FLF++MML++ + R IG++ + + Sbjct: 60 VYVGAIAVLFLFVVMMLNVRLVQFNVNMLRYLPLGGVIGLIFLLELFLIIDSDLIPLFGL 119 Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 N A + + + NVE IGK+LYT Y Y +SG ILL++MIGAIVL + R Sbjct: 120 NINNNIAPFQWADTIDSITNVEAIGKLLYTHYFYLFLVSGMILLVAMIGAIVLTMYKRVG 179 Query: 171 IKRQDISKQLESNPDNSIVMVKV 193 ++RQDI++QL + +I + Sbjct: 180 VRRQDINEQLSRDFKETIRLTSP 202 >gi|94502583|ref|YP_588429.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays] gi|40795022|gb|AAR91066.1| NADH dehydrogenase subunit 6 [Zea mays] Length = 220 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 11/193 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + +GL +LLG +F AMI LVVY+GA Sbjct: 1 MILSVLSSFALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLILLGLDFFAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V FLF++MM +I I R S IG++ E+ N + + Sbjct: 61 IAVLFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLKYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNS 187 D+ ++ + + Sbjct: 181 DVFRRNALDFRRT 193 >gi|332528760|ref|ZP_08404737.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Hylemonella gracilis ATCC 19624] gi|332041826|gb|EGI78175.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Hylemonella gracilis ATCC 19624] Length = 217 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 73/203 (35%), Positives = 126/203 (62%), Gaps = 12/203 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FF+LFS + +I++ VVT RNP+++V L+ AF A+ ++LLL AEF+A+ ++ Sbjct: 1 MDVKTGFFFLFSAVLLIAALRVVTARNPVHAVLFLMLAFSQASAIWLLLQAEFLAVALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--- 117 VY+GAV+V FLF++MMLDI I+ + ++GF + +L ++V ++ + Sbjct: 61 VYLGAVMVLFLFVVMMLDIRID----QLRQGFWKHLPLALLLGGIVVVEMAAVLLTGFDM 116 Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +L V + +N + +G +LYT+Y +P++I+ ILL++MI AI L LR R+D K Sbjct: 117 VDPQVAAQLPAGVAEESNAKALGILLYTRYVWPIQIAAAILLVAMIAAIALTLRARKDSK 176 Query: 173 RQDISKQLESNPDNSIVMVKVKS 195 D S Q+ + + +VKV+ Sbjct: 177 AIDPSIQVRVRAADRLQLVKVEP 199 >gi|114151645|ref|YP_740422.1| NADH dehydrogenase subunit 6 [Zea mays subsp. parviglumis] gi|1843454|emb|CAA66370.1| mitochondrial complex I subunit 6 [Zea mays] gi|93116052|gb|ABE98685.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays] gi|93116096|gb|ABE98728.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays] gi|93116144|gb|ABE98775.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays] gi|102567978|gb|ABF70862.1| NADH dehydrogenase subunit 6 [Zea mays subsp. parviglumis] gi|102579645|gb|ABF70925.1| NADH dehydrogenase subunit 6 [Zea mays subsp. mays] Length = 220 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 11/187 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM +I I R S IG I E+ N + + Sbjct: 61 IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLKYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLE 181 D+ ++ Sbjct: 181 DVFRRNA 187 >gi|326316108|ref|YP_004233780.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372944|gb|ADX45213.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 222 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 80/205 (39%), Positives = 125/205 (60%), Gaps = 8/205 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+T RNP+++V LI AF AA ++LLL AEF+A+ ++ Sbjct: 1 MDAKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAAIWLLLKAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113 VY+GAV+V FLF++MMLDI I+ R F + FIG L A + Sbjct: 61 VYLGAVMVLFLFVVMMLDIHIDTVRQGFWRHFPLAAFIGALIALEMAAVLMGGFRGMDEP 120 Query: 114 -VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +A + + V + +N + +GK+LYT+Y YP+EI+ ILL++MI AI L LR R+D K Sbjct: 121 KAVAAMVDAAGNVVQYSNTKALGKLLYTEYLYPVEIAAVILLVAMIAAIALTLRQRKDTK 180 Query: 173 RQDISKQLESNPDNSIVMVKVKSGK 197 +S+Q+ + + +VKV + + Sbjct: 181 VTKVSEQVRVRAADRVALVKVAATQ 205 >gi|296136697|ref|YP_003643939.1| hypothetical protein Tint_2259 [Thiomonas intermedia K12] gi|295796819|gb|ADG31609.1| hypothetical protein Tint_2259 [Thiomonas intermedia K12] Length = 219 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 118/205 (57%), Gaps = 10/205 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYLFS + + ++ V+T RNP++S L+ AF + ++LLL AEF+A++ ++ Sbjct: 11 MDVQTILFYLFSAVLLFAALRVITARNPVHSALYLVLAFFQMSAIWLLLRAEFLAIVLVL 70 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA----------S 110 VYVGAV+V FLF++MMLDI+++ R F + +G+L + + Sbjct: 71 VYVGAVMVLFLFVVMMLDINLDSIRKGFWRYFPVAALVGVLIVLEMAAVLMQGFQIGGMT 130 Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 A + +N +G VLY+QY + +EI+ ILL+++I AI L LR R+D Sbjct: 131 RAAQVGAAASADNPLTHLSNTRALGVVLYSQYLFAVEIAAVILLVAIIAAIALTLRRRKD 190 Query: 171 IKRQDISKQLESNPDNSIVMVKVKS 195 ++ S+Q+++ + + +V + + Sbjct: 191 VRHMPASEQIKARRADRVRLVSMPA 215 >gi|114707378|ref|ZP_01440275.1| NADH dehydrogenase subunit J [Fulvimarina pelagi HTCC2506] gi|114537259|gb|EAU40386.1| NADH dehydrogenase subunit J [Fulvimarina pelagi HTCC2506] Length = 205 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 82/189 (43%), Positives = 120/189 (63%), Gaps = 5/189 (2%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 + S+ +VV +NP++SV LI FV AAGLFLL GAEF+A+I +VVYVGAV + FLF++M Sbjct: 17 VGSALMVVLAKNPVHSVLFLILTFVAAAGLFLLAGAEFLALILIVVYVGAVAILFLFVVM 76 Query: 76 MLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK----GNN 130 MLD+D+ + R + G+ +L AELI+ S + + L +N Sbjct: 77 MLDLDVGQLKSRAIQYAPFGAIIAVLLLAELIIAGSGTIADPVLASQTALPMAEAGGASN 136 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190 +E +G VLYT+Y +++G IL ++MIGAIVL LRH+ ++RQ I Q+ NP SI + Sbjct: 137 IEALGNVLYTRYILFFQLAGLILFVAMIGAIVLTLRHKEKVRRQSIPDQVARNPSTSIEV 196 Query: 191 VKVKSGKGI 199 +V+SG+GI Sbjct: 197 KQVESGRGI 205 >gi|121609753|ref|YP_997560.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Verminephrobacter eiseniae EF01-2] gi|121554393|gb|ABM58542.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Verminephrobacter eiseniae EF01-2] Length = 223 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 72/204 (35%), Positives = 121/204 (59%), Gaps = 9/204 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FFYLFS + + ++F V+T RNP+++V LI AF AA ++LLL AEF+A+ ++ Sbjct: 1 MDAKTGFFYLFSVVLLFAAFRVITARNPVHAVLYLILAFSQAAAVWLLLKAEFLAITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VY+GAV+V FLF++MMLDI I+ + F + +G L A + + + Sbjct: 61 VYLGAVMVLFLFVVMMLDIHIDSLRRGFWKHFPLAASVGALIALEMAAVLMGGFRATDEP 120 Query: 119 -------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + + + +N + +GK+LYT+Y +P+EI+ ILL++MI AI L LR R+D Sbjct: 121 KAGVAIADDAAGQLLAYSNSKALGKLLYTEYLFPVEIAAVILLVAMIAAIALTLRQRKDS 180 Query: 172 KRQDISKQLESNPDNSIVMVKVKS 195 K D + Q+ + + +V++ + Sbjct: 181 KAIDAAAQIRVRASDRLELVRMAA 204 >gi|329889340|ref|ZP_08267683.1| NADH-quinone oxidoreductase subunit J [Brevundimonas diminuta ATCC 11568] gi|328844641|gb|EGF94205.1| NADH-quinone oxidoreductase subunit J [Brevundimonas diminuta ATCC 11568] Length = 207 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 89/201 (44%), Positives = 131/201 (65%), Gaps = 4/201 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ L FYL + +A++S+ LVVT RNP++SV LI F +AAGLF+LL AEF+AM+ +VVY Sbjct: 1 MQGLAFYLLATVAVVSALLVVTARNPVHSVLWLILTFFSAAGLFVLLSAEFLAMLLVVVY 60 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V FLF++MMLD+D +++ E + L G+L AE+I+ + + A + Sbjct: 61 VGAVAVLFLFVVMMLDVDFVKLREGYARYLPLAGIVAGVLLAEMIMVSITVVQGGAARDA 120 Query: 122 SRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + V G N+E IG+VLYT Y Y + +G +LL++MIGAIVL LRHR + RQD++ Sbjct: 121 TSPVPAGPDVTNIETIGRVLYTDYVYFFQAAGVVLLIAMIGAIVLTLRHRPGVHRQDLAA 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q ++ + V +G+G+ Sbjct: 181 QANRERAKAVEIKSVTTGQGV 201 >gi|224824814|ref|ZP_03697921.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Lutiella nitroferrum 2002] gi|224603307|gb|EEG09483.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Lutiella nitroferrum 2002] Length = 214 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 61/199 (30%), Positives = 114/199 (57%), Gaps = 2/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ S + I + V+T +NP+++ L+ AF +AG +LLL +EF+A+ ++ Sbjct: 1 MSFPTVVFYVLSAILIFAGLRVITAKNPVHAALYLVLAFFTSAGHWLLLESEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118 VYVGAV+V FLF++MMLDI+ E + + +G++ +++ S + Sbjct: 61 VYVGAVMVLFLFVVMMLDINFEKLREGFWKNAPLAGTVGLIMVGEMVLILMSPEASLGSY 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + L +N+ +G+++YT Y +P E++ +LL+ M+ AI L +R R+D K + Sbjct: 121 KGAAPLAADASNIRELGRLIYTTYLWPFELAAVVLLVGMVAAIALTMRKRKDTKFVNPGD 180 Query: 179 QLESNPDNSIVMVKVKSGK 197 Q+ D+ + +VK+ + K Sbjct: 181 QVVVRRDDRVRLVKMAAVK 199 >gi|298291837|ref|YP_003693776.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Starkeya novella DSM 506] gi|296928348|gb|ADH89157.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Starkeya novella DSM 506] Length = 201 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 126/201 (62%), Gaps = 2/201 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +LFFYLF+ +A+ S+F+V+ RNP++SV LI FVNA+GLF+L+GAE++AM+ +V Sbjct: 1 MSLAALFFYLFAGVAVASAFMVIASRNPVHSVLFLILTFVNASGLFILIGAEYLAMLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--SAE 118 VYVGAV V FLF++MMLD+D + +G++ +V F Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGVLVGLVFLAELVLVLGTWTFGEGVT 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G ++ +N IG+VLYT Y + + +G ILL++MIGAIVL LRH+ ++KRQ + Sbjct: 121 GAVASAAPGASNAVQIGRVLYTDYVFFFQAAGLILLVAMIGAIVLTLRHKENVKRQSVPV 180 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q +I +VKV SGKG+ Sbjct: 181 QNARTKAMAIDVVKVPSGKGL 201 >gi|117926900|ref|YP_867517.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Magnetococcus sp. MC-1] gi|117610656|gb|ABK46111.1| NADH dehydrogenase subunit J [Magnetococcus sp. MC-1] Length = 196 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 73/194 (37%), Positives = 117/194 (60%), Gaps = 2/194 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FYL + + ++++ V+T +NP+ SV L+ AF AAGLFLL+ AEF+A+I ++VY+G Sbjct: 4 DVVFYLLAAIMLVAALRVITAKNPVSSVMFLVLAFFTAAGLFLLIEAEFLAVILVMVYMG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV + FLF++MMLD+D + + I + A L A+ E + + Sbjct: 64 AVAILFLFVVMMLDVDFALLRQGARDHLP--LGIAVGAVVLFEFAAVASSIHPEQHGAVV 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 NN IGK+LYT+Y +P E++ ILL+++IGA+ L R R +++ Q+I Q+ Sbjct: 122 GENVNNTLEIGKILYTKYLFPFEVASLILLVALIGAVALAHRKRNNVRTQNIPDQIARTR 181 Query: 185 DNSIVMVKVKSGKG 198 D S+ + KVKSG+G Sbjct: 182 DESVALKKVKSGEG 195 >gi|38638285|ref|NP_943690.1| NADH dehydrogenase subunit 6 [Chara vulgaris] gi|32966599|gb|AAP92182.1| NADH dehydrogenase subunit 6 [Chara vulgaris] Length = 200 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 11/198 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +FS +A++S +V+ RNP++SV LI F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFSIFSSIALVSGVMVIRARNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V FLF++MML+I I R IG++ E+ + N + ELS Sbjct: 62 IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGLIFLLEIFLVVDNDYIPILPTELSTT 121 Query: 125 VFK----------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 VF+ N+E +G +LYT Y Y +S ILL++MIGAIVL + +KRQ Sbjct: 122 VFQYTVYASKIQSWTNLETLGNLLYTTYFYLFLVSSLILLVAMIGAIVLTMHKTTQVKRQ 181 Query: 175 DISKQLESNPDNSIVMVK 192 D+ +Q + +I ++ Sbjct: 182 DVFQQNMIDFQKTIKKIR 199 >gi|239816474|ref|YP_002945384.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax paradoxus S110] gi|239803051|gb|ACS20118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Variovorax paradoxus S110] Length = 218 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 69/194 (35%), Positives = 119/194 (61%), Gaps = 1/194 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FYLF+ + + ++F V+T RNP+Y+ L+ AF A+ ++LLL AEF+A+ ++ Sbjct: 1 MDVKTGLFYLFAAVLLFAAFRVITARNPVYAALYLVLAFFQASAIWLLLRAEFLAISLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLDI+++ + + K L + ++A E+ A Sbjct: 61 VYVGAVMVLFLFVVMMLDINVDGLRQGFWKHFPLAAGVGALIALEMAAVLMGGFRLEAPR 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + G+N +GK+LY++Y YPLEI+ ILL++++ AI L LR R+D K + S Q Sbjct: 121 AGAAAAAHGSNTLELGKLLYSEYLYPLEIAAVILLVAIVAAIALTLRTRKDSKYVNPSDQ 180 Query: 180 LESNPDNSIVMVKV 193 + + + +V++ Sbjct: 181 VRVKARDRVRIVQM 194 >gi|157826242|ref|YP_001493962.1| NADH dehydrogenase subunit J [Rickettsia akari str. Hartford] gi|157800200|gb|ABV75454.1| NADH dehydrogenase subunit J [Rickettsia akari str. Hartford] Length = 205 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N IYSV LIF F+N AGL +LLGAEF+AMI +V+YVGA Sbjct: 3 IFFYLFATLITISSLCVVLSKNSIYSVLCLIFTFINGAGLMILLGAEFLAMILIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122 V V FLF+IMMLD+ + K S FI ++ +I+ + + Sbjct: 63 VAVLFLFVIMMLDMHFNKTITQLKENLALSIFIALIMFCDLIIIILLGTKNINFSSDISF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N + IG VLYT + P +++G IL ++MI I L L+ R +K QDI+KQL Sbjct: 123 AITNNISNTKAIGNVLYTNFMLPFQMAGLILFVAMIACITLTLKKREGVKHQDITKQLSH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N N ++M K KG+ Sbjct: 183 NKGNVVLMTKPTLNKGV 199 >gi|54298763|ref|YP_125132.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str. Paris] gi|296108423|ref|YP_003620124.1| NADH dehydrogenase I chain J [Legionella pneumophila 2300/99 Alcoy] gi|53752548|emb|CAH13980.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str. Paris] gi|295650325|gb|ADG26172.1| NADH dehydrogenase I chain J [Legionella pneumophila 2300/99 Alcoy] Length = 219 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 112/213 (52%), Gaps = 20/213 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+F+ + ++S+ +V++ NP+ V L+ F +A L++L AEF+A+I ++VYVG Sbjct: 7 QAIFYIFALLTVLSALMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------- 109 AV+ FLF++MML+IDIE + + I L L++ A Sbjct: 67 AVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALLTGLLMVAIPKDLFKNSVQIQEK 126 Query: 110 -----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 S M S + EL +N E +G VLYT Y EI+ ILL++++ AI L+ Sbjct: 127 PLSVSSQLMDLSTQDELVPPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLV 186 Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R KRQDI++Q+ + + ++ +KS K Sbjct: 187 HRGAIRSKRQDITQQIMTRRAERVKLISMKSEK 219 >gi|148361093|ref|YP_001252300.1| NADH dehydrogenase I subunit J [Legionella pneumophila str. Corby] gi|148282866|gb|ABQ56954.1| NADH dehydrogenase I, J subunit [Legionella pneumophila str. Corby] Length = 219 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 112/213 (52%), Gaps = 20/213 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+F+ + ++S+ +V++ NP+ V L+ F +A L++L AEF+A+I ++VYVG Sbjct: 7 QAIFYIFALLTVLSALMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------- 109 AV+ FLF++MML+IDIE + + I L L++ A Sbjct: 67 AVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALLTGLLMVAIPKDIFKNSVQIQEK 126 Query: 110 -----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 S M S + EL +N E +G VLYT Y EI+ ILL++++ AI L+ Sbjct: 127 PLSVSSQLMDLSTQDELVPPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLV 186 Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R KRQDI++Q+ + + ++ +KS K Sbjct: 187 HRGAIRSKRQDITQQIMTRRAERVKLISMKSEK 219 >gi|190571385|ref|YP_001975743.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357657|emb|CAQ55101.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 195 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 82/196 (41%), Positives = 133/196 (67%), Gaps = 8/196 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 FFY F+ ++I+S+ V++VRNP+++V LIF FVN+A LF+LLGAEF+AM+ ++VY+GA Sbjct: 3 FFFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVMIVYIGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V V FLF++MMLDID R ++GF +G + + +F++ S+ +S ++ Sbjct: 63 VAVLFLFVVMMLDIDY----IRLRQGFAKHCTLGAMLCVVFFLVISFVIRSSAPNISNVI 118 Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESN 183 + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ +K+Q++ KQL Sbjct: 119 NYNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQL--T 176 Query: 184 PDNSIVMVKVKSGKGI 199 +S+ +VK K GKG+ Sbjct: 177 QSSSVKLVKAKFGKGV 192 >gi|319898891|ref|YP_004158984.1| NADH dehydrogenase I chain J [Bartonella clarridgeiae 73] gi|319402855|emb|CBI76406.1| NADH dehydrogenase I chain J [Bartonella clarridgeiae 73] Length = 206 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 127/202 (62%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + FFY+F+F+ +IS+ +VV+ RNP++SV LI AF NAA LFLL GAEF+ +I LVVY Sbjct: 5 LAVAFFYIFAFIMLISAVIVVSARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V FLF++MMLD+D + + FIG++ A ++ FS E+ Sbjct: 65 VGAVAVLFLFVVMMLDVDFAELKSGALKYAPIGAFIGVIIAIELIFVFINNRFSPISEIH 124 Query: 123 RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 N + +G +LYT Y + EISG ILL++MIGAI+L LRHR +KRQ ++ Sbjct: 125 VTQPTSDSTQRTNTQALGDILYTDYVFYFEISGLILLVAMIGAIILTLRHRSGVKRQSVA 184 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ +N+I + KV+SGKGI Sbjct: 185 VQVARTAENAIEIKKVESGKGI 206 >gi|165933782|ref|YP_001650571.1| NADH:ubiquinone oxidoreductase subunit J [Rickettsia rickettsii str. Iowa] gi|165908869|gb|ABY73165.1| NADH-quinone oxidoreductase chain J [Rickettsia rickettsii str. Iowa] Length = 205 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122 V + FL +IMMLD+ + K S FI ++ +I+ + Sbjct: 63 VALLFLSVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N + IG VLYT + P +++G IL ++MI I L L+ R +KRQDISKQL Sbjct: 123 TITNNISNTKAIGSVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLRH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N +N+++M K KG+ Sbjct: 183 NKENTVLMTKPILNKGV 199 >gi|316996025|dbj|BAD83537.2| NADH dehydrogenase subunit 6 [Nicotiana tabacum] Length = 228 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV LI F N +GL LLLG +F AMI VVY+GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFLIPVFRNTSGLLLLLGLDFFAMIFPVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG+L E+ N + + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLLFWWEMFFILDNESIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNALDSRRTI 194 >gi|237746742|ref|ZP_04577222.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229378093|gb|EEO28184.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 220 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 113/196 (57%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FY F+ + +++ VVT RNP+++V L+ +F A L++LL AEF+A+I L+ Sbjct: 1 MEFETVLFYAFAAILTLAALRVVTSRNPVHAVLYLVLSFFTGAALWILLKAEFLALILLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MM+DI++ + ++ + F+G L + F+ + Sbjct: 61 VYVGAVMVLFLFVVMMMDIELGELKRIARKNLALALFVGGLIVLEMSAVIFRGFFALDLH 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + IGK L+T Y + +EI+ ILL+++I A+ L +R R D + S + Sbjct: 121 APDDASRIGLTSEIGKALFTDYLFSVEIAAIILLVALIAAVTLTIRRRSDARYTSASVAI 180 Query: 181 ESNPDNSIVMVKVKSG 196 P++ + +V++K+ Sbjct: 181 RVRPEDRLRVVEMKAE 196 >gi|67459647|ref|YP_247271.1| NADH dehydrogenase subunit J [Rickettsia felis URRWXCal2] gi|75535957|sp|Q4UK29|NUOJ_RICFE RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|67005180|gb|AAY62106.1| NADH dehydrogenase I chain J [Rickettsia felis URRWXCal2] Length = 205 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSLCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS--- 122 V V FLF+IMMLD+ + K S FI ++ +V + Sbjct: 63 VAVLFLFVIMMLDMHFNKTITQLKENLALSSFIALIMFADLVTIILLGTKNINFISDVSF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N + IGKVLYT + P +++G IL ++MI I L L+ R +K QDI+KQL Sbjct: 123 TITNDISNTKAIGKVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKHQDITKQLSH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N N ++M K KG+ Sbjct: 183 NKSNVVLMTKPTLNKGV 199 >gi|51473958|ref|YP_067715.1| NADH dehydrogenase subunit J [Rickettsia typhi str. Wilmington] gi|81610752|sp|Q68VV9|NUOJ_RICTY RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|51460270|gb|AAU04233.1| NADH dehydrogenase (ubiquinone) subunit J [Rickettsia typhi str. Wilmington] Length = 205 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + IISS VV +N +YSV LIF F+NAAGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFTFINAAGLMILLGAEFLAMLLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122 V V FLF+IMMLDI+ A + + S FI ++ + V S + + Sbjct: 63 VAVLFLFVIMMLDINFNQAITKLRENLSLSIFITLIMFVDLVITVILSTKNINHSSNISF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N + IG VLYT + P +++G IL ++MI I L L+ R +K QDI KQL Sbjct: 123 AIANNISNTKAIGSVLYTDFMLPFQMAGLILFVAMISCITLTLKKRERVKYQDIRKQLSH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N N I+M K KG+ Sbjct: 183 NKGNVILMTKPILNKGV 199 >gi|225631322|ref|ZP_03787996.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590973|gb|EEH12181.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 195 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 133/196 (67%), Gaps = 8/196 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 FFY F+ ++I+S+ V++VRNP+++V LIF FVN+A LF+LLGAEF+AM+ ++VY+GA Sbjct: 3 FFFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVMIVYIGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V V FLF++MMLDID R ++GF +G + + +F++ S+ +S ++ Sbjct: 63 VAVLFLFVVMMLDIDY----IRLRQGFAKHCTLGAMLCVVFFLVISFVIRSSAPNISNVI 118 Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESN 183 + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ +K+Q++ KQL Sbjct: 119 NYNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQL--T 176 Query: 184 PDNSIVMVKVKSGKGI 199 +S+ ++K K GKG+ Sbjct: 177 QSSSVKLIKAKFGKGV 192 >gi|157829056|ref|YP_001495298.1| NADH dehydrogenase subunit J [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801537|gb|ABV76790.1| NADH dehydrogenase subunit J [Rickettsia rickettsii str. 'Sheila Smith'] Length = 205 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISS VV +N +YSV LIFAF+N AGL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFATLITISSVCVVLSKNSVYSVLWLIFAFINGAGLMILLGAEFLAMMLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122 V + FL +IMMLD+ + K S FI ++ +I+ + Sbjct: 63 VALLFLSVIMMLDMHFNKTITQLKANLALSIFIALIMFADLVIIILLGTKNINFNSNVSF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N + IG VLYT + P +++G IL ++MI I L L+ R +KRQDISKQL Sbjct: 123 TITNNISNTKAIGGVLYTDFMLPFQMAGLILFVAMIACITLTLKKREGVKRQDISKQLRH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N +N+++M K KG+ Sbjct: 183 NKENTVLMTKPILNKGV 199 >gi|186476755|ref|YP_001858225.1| NADH dehydrogenase subunit J [Burkholderia phymatum STM815] gi|184193214|gb|ACC71179.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia phymatum STM815] Length = 222 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 123/207 (59%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + +S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MDFTTVLFYIFALLLTVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDVLRRDFKRFVPMATVVG----AIIVIETALILWHGYGA 116 Query: 121 LSRLV----------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + V +N IGK++YT Y + E++G +LL+++I AI L RH +D Sbjct: 117 TVQPVRDTTAAVAGAADWSNTRLIGKIIYTDYIFAFEVAGLVLLVAIIAAIALTTRHGKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ +S Q++ ++ + +VK+ + K Sbjct: 177 SKRQRVSDQVKVRREDRVRVVKMAAEK 203 >gi|157804159|ref|YP_001492708.1| NADH dehydrogenase subunit J [Rickettsia canadensis str. McKiel] gi|157785422|gb|ABV73923.1| NADH dehydrogenase subunit J [Rickettsia canadensis str. McKiel] Length = 205 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + ISSF VV +N +YSV LIFAF+N + L +LLGAEF+AMI +V+YVGA Sbjct: 3 IFFYLFATLITISSFCVVLNKNSVYSVLWLIFAFLNGSSLMILLGAEFLAMILIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA---AELIVCASNFMVFSAEGELS 122 V V FLF+IMMLD+ A + K S I ++ +I+ + + L Sbjct: 63 VAVLFLFVIMMLDMHFNKAITQLKENLTLSILISLIMFADLVIIILLGTKNINFSSDILF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 +N + IG +LYT + P +++G IL ++MI IVL LR R IKRQDI KQL Sbjct: 123 ATTNNISNTKAIGNILYTDFMIPFQMAGLILFVAMISCIVLTLRKREGIKRQDILKQLSH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N +N+++M K KGI Sbjct: 183 NKENAVLMTKPLLNKGI 199 >gi|54295609|ref|YP_128024.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str. Lens] gi|53755441|emb|CAH16937.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila str. Lens] Length = 219 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 20/213 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+F+ + ++S+ +V++ NP+ V L+ F +A L++L AEF+A+I ++VYVG Sbjct: 7 QAIFYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWILAEAEFLALILILVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------- 109 AV+ FLF++MML+IDIE + + I L L++ A Sbjct: 67 AVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALFTGLLMVAIPKDLFKNSVQTQEK 126 Query: 110 -----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 S M S E L +N E +G VLYT Y EI+ ILL++++ AI L+ Sbjct: 127 PLSVNSQLMDLSTEDGLVTPENATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLV 186 Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R KRQDI++Q+ + + ++ +KS K Sbjct: 187 HRGAIRSKRQDITQQIMTRRAERVKLISMKSEK 219 >gi|294340852|emb|CAZ89247.1| putative NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) (NDH-1, chain J) (NuoJ) [Thiomonas sp. 3As] Length = 209 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 118/205 (57%), Gaps = 10/205 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q++ FYLFS + + ++ V+T RNP++S L+ AF + ++LLL AEF+A++ ++ Sbjct: 1 MDVQTILFYLFSAVLLFAALRVITARNPVHSALYLVLAFFQMSAIWLLLRAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA----------S 110 VYVGAV+V FLF++MMLDI+++ R F + +G+L + + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDSIRKGFWRYFPVAALVGVLIVLEMAAVLMQGFQIGGMT 120 Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 A + +N +G VLY+QY + +EI+ ILL+++I AI L LR R+D Sbjct: 121 RAAQVGAAASADNPLTHLSNTRALGVVLYSQYLFAVEIAAVILLVAIIAAIALTLRRRKD 180 Query: 171 IKRQDISKQLESNPDNSIVMVKVKS 195 ++ S+Q+++ + + +V + + Sbjct: 181 VRHMPASEQIKARRADRVRLVSMPA 205 >gi|58696815|ref|ZP_00372343.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225630632|ref|YP_002727423.1| NADH dehydrogenase I, J subunit [Wolbachia sp. wRi] gi|58536985|gb|EAL60140.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225592613|gb|ACN95632.1| NADH dehydrogenase I, J subunit [Wolbachia sp. wRi] Length = 195 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 8/196 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 FFY FS ++I+S+ V++VRNP+++V LIF FVN+A LF+LLGAEF+AM+ L+VY+GA Sbjct: 3 FFFYFFSILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVLIVYIGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V V FLF++MMLDID R ++GF F +G + + +F++ S+ +S ++ Sbjct: 63 VAVLFLFVVMMLDIDY----IRLRQGFAKHFTLGAILCVVFFLVISFVIRSSTLNISNVI 118 Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESN 183 + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ IKRQ++ KQL Sbjct: 119 NYNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGIKRQNVLKQL--T 176 Query: 184 PDNSIVMVKVKSGKGI 199 +S+ +VK K GKG+ Sbjct: 177 QSSSVKLVKAKFGKGV 192 >gi|111220508|ref|YP_711302.1| NADH dehydrogenase subunit J [Frankia alni ACN14a] gi|111148040|emb|CAJ59706.1| NADH dehydrogenase (quinone) [Frankia alni ACN14a] Length = 358 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 98/199 (49%), Gaps = 2/199 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F++ + +A++++ +V VR+ ++ L+ A +L+ A F+ + ++V Sbjct: 18 TGEATVFWILAPIAVLAALGMVFVRSAVHCALLLVANLFCVAVFYLVQQAPFLGFVQIIV 77 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGE 120 Y GA++V FLF++M++ +D + RG LG+ G+ A L+V + + Sbjct: 78 YAGAIMVLFLFVLMLVGVDSSDSLVETIRGQRLGAAIFGLGFAGLLVFPIGSAIDGETAK 137 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 +G NV+ IG++L++ Y + E +L+++ IG +VL R R R D +++ Sbjct: 138 GLDTPNEGGNVQAIGRLLFSDYVFVFEAVSALLVVAAIGTMVLGHREREG-GRVDQRERM 196 Query: 181 ESNPDNSIVMVKVKSGKGI 199 + G G+ Sbjct: 197 RRRFAEPGRQLTPLPGPGV 215 >gi|57014000|ref|YP_173471.1| NADH dehydrogenase subunit 6 [Nicotiana tabacum] Length = 228 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV LI F N +GL LLLG +F AMI VVY+GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFLIPVFRNTSGLLLLLGLDFFAMIFPVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG+L E+ N + + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLLFWWEMFFILDNESIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNALDSRRTI 194 >gi|42520778|ref|NP_966693.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410518|gb|AAS14627.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 195 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 134/196 (68%), Gaps = 8/196 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 FFY F+ ++I+S+ V++VRNP+++V LIF FVN+A LF+LLGAEF+AM+ L+VY+GA Sbjct: 3 FFFYFFAILSILSAVCVISVRNPVHAVLFLIFTFVNSAVLFILLGAEFIAMMVLIVYIGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V V FLF++MMLDID R ++GF F +G + + +F++ S+ +S ++ Sbjct: 63 VAVLFLFVVMMLDIDY----IRLRQGFAKHFTLGAILCGVFFLIISFVIRSSTLNISNVI 118 Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESN 183 + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ +K+Q++ KQL Sbjct: 119 NYNANNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKKQNVLKQL--T 176 Query: 184 PDNSIVMVKVKSGKGI 199 +S+ +VK K GKG+ Sbjct: 177 QSSSVKLVKAKFGKGV 192 >gi|15836917|ref|NP_297605.1| NADH dehydrogenase subunit J [Xylella fastidiosa 9a5c] gi|9105137|gb|AAF83125.1|AE003884_10 NADH-ubiquinone oxidoreductase, NQO10 subunit [Xylella fastidiosa 9a5c] Length = 222 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 117/203 (57%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FYLFS +A+ ++ V++VR+P+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 2 MDWVNIAFYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLDID + E + +G G++ +++V M + Sbjct: 62 VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPF 121 Query: 120 ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +N+ + L+T + +P E + IL +++I A++L LR R +K QD Sbjct: 122 PVDNAAAQAAHTSNLTWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + +V + + + + Sbjct: 182 SQQTRVKAADRLRIVSMPTEEPV 204 >gi|114777370|ref|ZP_01452367.1| NADH dehydrogenase I chain J [Mariprofundus ferrooxydans PV-1] gi|114552152|gb|EAU54654.1| NADH dehydrogenase I chain J [Mariprofundus ferrooxydans PV-1] Length = 194 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 75/193 (38%), Positives = 115/193 (59%), Gaps = 2/193 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++++FF LF+ ++++S VV RN ++SV LIF F NAAGLF LL AEF+ +I +++Y Sbjct: 2 LETVFFNLFAGLSVLSGMGVVLARNTMHSVMFLIFCFFNAAGLFFLLDAEFIGIIMILIY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--AEGE 120 VGAV+V F F++MML+I+ + + I+ + A+ VFS A Sbjct: 62 VGAVMVLFTFVVMMLEINTARMREGFLQYLPLGGLVAIVLLVEFISAAVSGVFSSGAMAT 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 L NN IG+VLYT+Y EI+ ILL+++IGAIVL LR R+D K Q I+ Q+ Sbjct: 122 ADHLPQSVNNTVEIGQVLYTKYLLGFEIAALILLVALIGAIVLTLRTRKDAKYQKIAAQV 181 Query: 181 ESNPDNSIVMVKV 193 ++ + V++ Sbjct: 182 GVRKEDRMRKVRM 194 >gi|52842978|ref|YP_096777.1| NADH dehydrogenase I, J subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630089|gb|AAU28830.1| NADH dehydrogenase I, J subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 219 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 20/213 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+F+ + ++S+ +V++ NP+ V L+ F +A L++L AEF+A+I ++VYVG Sbjct: 7 QAIFYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWVLAEAEFLALILILVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------- 109 AV+ FLF++MML+IDIE + + I L L++ A Sbjct: 67 AVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALLTGLLMVAIPKDLFKNSVQTQEK 126 Query: 110 -----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 S M S E L +N E +G VLYT Y EI+ ILL++++ AI L+ Sbjct: 127 PLSVNSQLMDLSTEDGLVTPEKATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLV 186 Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R KRQDI++Q+ + + ++ +KS K Sbjct: 187 HRGAIRSKRQDITQQIMTRRAERVKLISMKSEK 219 >gi|158423301|ref|YP_001524593.1| NADH ubiquinone oxidoreductase chain J protein [Azorhizobium caulinodans ORS 571] gi|158330190|dbj|BAF87675.1| NADH ubiquinone oxidoreductase chain J protein [Azorhizobium caulinodans ORS 571] Length = 202 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 136/202 (67%), Gaps = 3/202 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FFYLF+ + + S+F+V++ RNP+YSV LI AFVNAAGLF+LLG EF+A+I +V Sbjct: 1 MSFAAAFFYLFACILVGSAFMVISSRNPVYSVLFLILAFVNAAGLFILLGVEFLALILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D +E+ + + +G+ I AEL++ + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGAIVGLIFLAELVLVVGTWAAGPGVT 120 Query: 120 ELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + V N +G+VLYT Y Y +I+GF+LL++MIGAIVL LRH+ ++KRQ+IS Sbjct: 121 VATNAVMTYPRGNTHALGQVLYTDYIYFFQIAGFVLLVAMIGAIVLTLRHKPNVKRQNIS 180 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ P+ ++ +VKVK G+GI Sbjct: 181 AQVARTPETAMEVVKVKPGQGI 202 >gi|15604622|ref|NP_221140.1| NADH dehydrogenase subunit J [Rickettsia prowazekii str. Madrid E] gi|20139313|sp|Q9ZCG3|NUOJ_RICPR RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|3861317|emb|CAA15216.1| NADH DEHYDROGENASE I CHAIN J (nuoJ) [Rickettsia prowazekii] gi|292572439|gb|ADE30354.1| NADH dehydrogenase I chain J [Rickettsia prowazekii Rp22] Length = 205 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 117/197 (59%), Gaps = 3/197 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +FFYLF+ + IISS VV +N +YSV LIF F+N +GL +LLGAEF+AM+ +V+YVGA Sbjct: 3 IFFYLFTTLIIISSLCVVLSKNSVYSVLWLIFTFINGSGLMILLGAEFLAMLLIVIYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS--- 122 V V FLF+IMMLDI+ A + + S FI ++ +V + + Sbjct: 63 VAVLFLFVIMMLDINFNQAITKLRENLSLSIFITLIMFADLVITIILSTKNINYSSNISF 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + +N + IG VLYT++ P +I+G IL ++MI I L L+ R IK QDI KQL Sbjct: 123 AIANNISNTKAIGNVLYTEFMLPFQIAGLILFVAMISCITLTLKKRDRIKHQDIRKQLSH 182 Query: 183 NPDNSIVMVKVKSGKGI 199 N N I+M K KG+ Sbjct: 183 NKSNVILMTKPILNKGV 199 >gi|302383059|ref|YP_003818882.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brevundimonas subvibrioides ATCC 15264] gi|302193687|gb|ADL01259.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Brevundimonas subvibrioides ATCC 15264] Length = 208 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 128/201 (63%), Gaps = 4/201 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + FYL S +A++S LVVT RNP++SV LI AF ++AGLF+LLGAEF+AM+ +VVY Sbjct: 2 LQGIAFYLLSAVAVVSGLLVVTARNPVHSVLWLILAFFSSAGLFVLLGAEFLAMLLVVVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE- 120 VGAV V FLF++MMLD+D + + E L + G+L AE+++ + + A + Sbjct: 62 VGAVAVLFLFVVMMLDVDFVRLREGYATYLPLAAIVAGVLLAEMVMISIVVVQGGAASDA 121 Query: 121 --LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + +NVE IG+VLYT Y Y + +G +LL++MIGAIVL LR + ++RQD Sbjct: 122 VAPAVATADASNVETIGRVLYTDYIYFFQAAGIVLLIAMIGAIVLTLRKKPSVRRQDPGA 181 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 Q + S+ + V +G G+ Sbjct: 182 QTNRDRKTSVEIKGVVTGAGV 202 >gi|307611650|emb|CBX01338.1| NADH-quinone oxidoreductase chain J [Legionella pneumophila 130b] Length = 219 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 20/213 (9%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+F+ + ++S+ +V++ NP+ V L+ F +A L++L AEF+A+I ++VYVG Sbjct: 7 QAIFYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTSAVLWILAEAEFLALILILVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------- 109 AV+ FLF++MML+IDIE + + I L L++ A Sbjct: 67 AVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVALLTGLLMVAIPKDLFKNSVQTQEK 126 Query: 110 -----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 S M S E L +N E +G VLYT Y EI+ ILL++++ AI L+ Sbjct: 127 PLSVNSQLMDLSTEDGLVTPKNATSNTEKLGMVLYTDYILAFEIAAVILLVAIVSAITLV 186 Query: 165 LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R KRQDI++Q+ + + ++ +KS K Sbjct: 187 HRGAIRSKRQDITQQIMTRRAERVKLISMKSEK 219 >gi|241760703|ref|ZP_04758795.1| NADH dehydrogenase i chain j [Neisseria flavescens SK114] gi|241318884|gb|EER55410.1| NADH dehydrogenase i chain j [Neisseria flavescens SK114] Length = 223 Score = 160 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|114151579|ref|YP_740380.1| NADH dehydrogenase subunit 6 [Zea perennis] gi|102567913|gb|ABF70830.1| NADH dehydrogenase subunit 6 [Zea perennis] Length = 209 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 11/187 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V FLF++MM +I I R S IG++ E+ N + + Sbjct: 61 IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLKYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLE 181 D+ ++ Sbjct: 181 DVFRRNA 187 >gi|91208862|ref|YP_539023.1| NADH dehydrogenase subunit 6 [Physcomitrella patens] gi|90991402|dbj|BAE93094.1| NADH dehydrogenase subunit 6 [Physcomitrella patens] Length = 201 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 11/198 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +FS +A++SS +V+ +NP++SV I F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFSVFSSIALVSSVMVIRAKNPVHSVLFFILVFFNTSGLLVLLGLDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-----------NFMV 114 + V FLF++MML+I I R IG++ I Sbjct: 62 IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGVIFLLEIFFIVDNDYIPILPTKLSTT 121 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + + + N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 122 YLTYTVYAEKIQSWTNLETLGNLLYTTYFVLFLVSSLILLVAMIGAIVLTMHKTTQVKRQ 181 Query: 175 DISKQLESNPDNSIVMVK 192 D+ +Q + N+I ++ Sbjct: 182 DVFRQNAIDFKNTIKKIR 199 >gi|298370370|ref|ZP_06981686.1| NADH dehydrogenase (ubiquinone), J subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281830|gb|EFI23319.1| NADH dehydrogenase (ubiquinone), J subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 223 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELASVLLLLGMVAAIALVHRKTFNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|254805705|ref|YP_003083926.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha14] gi|254669247|emb|CBA08121.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha14] Length = 223 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|225077028|ref|ZP_03720227.1| hypothetical protein NEIFLAOT_02080 [Neisseria flavescens NRL30031/H210] gi|224951585|gb|EEG32794.1| hypothetical protein NEIFLAOT_02080 [Neisseria flavescens NRL30031/H210] gi|325129048|gb|EGC51898.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis N1568] Length = 223 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|325267329|ref|ZP_08133991.1| NADH-quinone oxidoreductase subunit J [Kingella denitrificans ATCC 33394] gi|324981266|gb|EGC16916.1| NADH-quinone oxidoreductase subunit J [Kingella denitrificans ATCC 33394] Length = 217 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 67/198 (33%), Positives = 117/198 (59%), Gaps = 3/198 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FYLF+ + + + VT +NP+++ L+ F +A ++LL+ AEF+ + +V Sbjct: 1 MTFQLILFYLFAAVILYGALQTVTAKNPVHAALHLVLTFCASAMMWLLMQAEFLGITLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+ID+E R + +G+L A L++ + Sbjct: 61 VYVGAVMVLFLFVVMMLNIDVEEMRQGFWRHAPAALVVGVLMAALLIAIFLAPDTALNQF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + +NV ++GK +YT Y P E++ +L+L M+ AI L+ R + KRQD ++ Sbjct: 121 GLMKDIPADYSNVRDLGKQIYTAYLLPFELAAVLLVLGMVAAIALVHRKTNNPKRQDPAE 180 Query: 179 QLESNPD-NSIVMVKVKS 195 Q++ + D N + +VK++S Sbjct: 181 QVKVSADKNRMRLVKMES 198 >gi|255067293|ref|ZP_05319148.1| NADH dehydrogenase, J subunit [Neisseria sicca ATCC 29256] gi|255048444|gb|EET43908.1| NADH dehydrogenase, J subunit [Neisseria sicca ATCC 29256] Length = 223 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 112/200 (56%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT+Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDVPADYNNIRDLGSRIYTEYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|261364358|ref|ZP_05977241.1| NADH dehydrogenase, J subunit [Neisseria mucosa ATCC 25996] gi|288567622|gb|EFC89182.1| NADH dehydrogenase, J subunit [Neisseria mucosa ATCC 25996] Length = 223 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|313669275|ref|YP_004049559.1| NADH dehydrogenase I chain J [Neisseria lactamica ST-640] gi|313006737|emb|CBN88207.1| NADH dehydrogenase I chain J [Neisseria lactamica 020-06] Length = 223 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|261400481|ref|ZP_05986606.1| NADH dehydrogenase, J subunit [Neisseria lactamica ATCC 23970] gi|269209740|gb|EEZ76195.1| NADH dehydrogenase, J subunit [Neisseria lactamica ATCC 23970] Length = 223 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|326387452|ref|ZP_08209061.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Novosphingobium nitrogenifigens DSM 19370] gi|326208108|gb|EGD58916.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Novosphingobium nitrogenifigens DSM 19370] Length = 205 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 79/202 (39%), Positives = 122/202 (60%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q+ FYLF+ + I+S + + RNP++SV LI AF NAAGL +L GAEF+AM+ ++VY Sbjct: 2 IQAFAFYLFATLMIVSGAVTILARNPVHSVLWLILAFFNAAGLMVLAGAEFIAMLLIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-----LAAELIVCASNFMVFSA 117 VGAV V FLF++MMLDID R + + L ++V ++ M Sbjct: 62 VGAVAVLFLFVVMMLDIDFAELRAGFIRNAPLGVILAVVLFVELFVGILVRSAGDMAIGT 121 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 G + + +N IG +LYT+Y + E +GFILL++MIGAIVL R R ++ Q+I+ Sbjct: 122 AGAATAVPAGLSNTAAIGALLYTRYLFVFEAAGFILLVAMIGAIVLTHRQRSGVRGQNIA 181 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 KQ+ P+ + + ++ + GKG+ Sbjct: 182 KQIARRPEEATINLQPEVGKGV 203 >gi|325131603|gb|EGC54310.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis M6190] gi|325139142|gb|EGC61688.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis ES14902] gi|325203368|gb|ADY98821.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis M01-240355] Length = 223 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|155029063|emb|CAO85827.1| NADH dehydrogenase subunit 6 [Helianthus annuus] Length = 309 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S +A++S +VV +NP++SV I F N +GL LLLG +F AMI VV++GA Sbjct: 1 MILSVLSSLALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYMVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDSRRTI 194 >gi|261379571|ref|ZP_05984144.1| NADH dehydrogenase, J subunit [Neisseria subflava NJ9703] gi|284798045|gb|EFC53392.1| NADH dehydrogenase, J subunit [Neisseria subflava NJ9703] Length = 223 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLDAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|296313737|ref|ZP_06863678.1| NADH dehydrogenase, J subunit [Neisseria polysaccharea ATCC 43768] gi|296839660|gb|EFH23598.1| NADH dehydrogenase, J subunit [Neisseria polysaccharea ATCC 43768] Length = 223 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|325915548|ref|ZP_08177859.1| NADH dehydrogenase subunit J [Xanthomonas vesicatoria ATCC 35937] gi|325538264|gb|EGD09949.1| NADH dehydrogenase subunit J [Xanthomonas vesicatoria ATCC 35937] Length = 220 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M S+ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 2 MDWVSIAFYAFSAIAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V +A Sbjct: 62 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRTATPF 121 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ E + IL ++++ A++L LR R IK Q+ Sbjct: 122 PVDNAAAQAADSSNLTWLAKSLYTEFLLAFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + +VK+ K + Sbjct: 182 SEQSRVKAGDRLRIVKMAVEKPV 204 >gi|218767057|ref|YP_002341569.1| NADH dehydrogenase I chain J [Neisseria meningitidis Z2491] gi|121051065|emb|CAM07335.1| NADH dehydrogenase I chain J [Neisseria meningitidis Z2491] Length = 223 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY+F+ + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|163793196|ref|ZP_02187172.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199] gi|159181842|gb|EDP66354.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199] Length = 204 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 125/204 (61%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+Q+L FYLF+ +A+ S +V+T RNP++SV LI AF NAAGLF+L+GAEF+AMI +V Sbjct: 1 MVVQALVFYLFAAVAVASGAMVITSRNPVHSVLFLILAFFNAAGLFVLMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-----VF 115 VYVGAV V FLF++MMLDI+ R IG++ ++ + + Sbjct: 61 VYVGAVAVLFLFVVMMLDINFVELRQGFIRYVPVGAAIGLVLLAELLLITGAWTVAPGIP 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +A G + N +G +LYT+Y Y + +G ILL++MIGAIVL LR R ++RQ Sbjct: 121 NAMGAVIPPAADVTNTHALGGLLYTRYVYLFQAAGLILLIAMIGAIVLTLRSREGVRRQS 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I Q ++++ ++KV G G+ Sbjct: 181 ILVQNARRREDAVEVMKVTRGGGV 204 >gi|261378530|ref|ZP_05983103.1| NADH dehydrogenase, J subunit [Neisseria cinerea ATCC 14685] gi|269145080|gb|EEZ71498.1| NADH dehydrogenase, J subunit [Neisseria cinerea ATCC 14685] Length = 223 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|254670966|emb|CBA07654.1| NADH-ubiquinone oxidoreductase, chain J [Neisseria meningitidis alpha153] Length = 223 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 112/200 (56%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY+F+ + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|261391784|emb|CAX49239.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J; NDH-1, chain J) [Neisseria meningitidis 8013] Length = 223 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|15676177|ref|NP_273309.1| NADH dehydrogenase I chain J [Neisseria meningitidis MC58] gi|7225476|gb|AAF40707.1| NADH dehydrogenase I, J subunit [Neisseria meningitidis MC58] gi|316985181|gb|EFV64133.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis H44/76] gi|325135056|gb|EGC57684.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis M13399] gi|325141089|gb|EGC63592.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis CU385] gi|325145246|gb|EGC67525.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis M01-240013] gi|325145317|gb|EGC67595.1| NADH dehydrogenase i, j subunit [Neisseria meningitidis M01-240013] gi|325199456|gb|ADY94911.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis H44/76] Length = 223 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY+F+ + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFQLILFYIFAVIILYGALKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|71275681|ref|ZP_00651966.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Dixon] gi|71897775|ref|ZP_00680001.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Ann-1] gi|170729498|ref|YP_001774931.1| NADH dehydrogenase subunit J [Xylella fastidiosa M12] gi|182680814|ref|YP_001828974.1| NADH dehydrogenase subunit J [Xylella fastidiosa M23] gi|71163572|gb|EAO13289.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Dixon] gi|71732330|gb|EAO34384.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Ann-1] gi|167964291|gb|ACA11301.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xylella fastidiosa M12] gi|182630924|gb|ACB91700.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xylella fastidiosa M23] Length = 221 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 116/203 (57%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FYLFS + + ++ V++VR+P+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVNIAFYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLDID + E + +G G++ +++V M + Sbjct: 61 VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPF 120 Query: 120 ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +N+ + L+T + +P E + IL +++I A++L LR R +K QD Sbjct: 121 PVDNAAAQAADTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + +V + + K I Sbjct: 181 SQQTRVKSADRLRIVSMPTEKPI 203 >gi|294083720|ref|YP_003550477.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663292|gb|ADE38393.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Puniceispirillum marinum IMCC1322] Length = 201 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 121/195 (62%), Gaps = 2/195 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++LFFYLF+ + + S+F+VV +NP+YSV LI +F NAAGLF+L+GAEF+AM+ +VVY Sbjct: 2 FEALFFYLFAGIMLASAFMVVISKNPVYSVLFLILSFFNAAGLFVLIGAEFLAMLLVVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V FLF++MMLDI+ ++ +G + +V A F +G Sbjct: 62 VGAVAVLFLFVVMMLDINFAEMRAGFQKYLPLGLIVGGILVFELVAAMYGDAF--KGATL 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + N +G VLYT+Y Y +++G ILL++MIGAI L +RHR ++RQ ++ Q Sbjct: 120 PEASEIPNTTRLGGVLYTKYIYLFQVAGLILLVAMIGAISLTMRHRPGVRRQVVANQNMR 179 Query: 183 NPDNSIVMVKVKSGK 197 D ++ +V V GK Sbjct: 180 RRDETVEVVSVPVGK 194 >gi|325143092|gb|EGC65439.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis 961-5945] gi|325143162|gb|EGC65508.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis 961-5945] gi|325197537|gb|ADY92993.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis G2136] Length = 223 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|11467107|ref|NP_054408.1| NADH dehydrogenase subunit 6 [Marchantia polymorpha] gi|585594|sp|P26850|NU6M_MARPO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|404360|gb|AAB27401.1| NADH dehydrogenase subunit 6=nad6 gene product [Marchantia polymorpha=liverworts, Peptide Mitochondrial, 199 aa] gi|786192|gb|AAC09405.1| nad6 [Marchantia polymorpha] Length = 199 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 11/198 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+F +A++S +V+ +NP++SV LI F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFYVFVVLALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-----------NFMV 114 + V FLF++MML I IE R IG++ I Sbjct: 62 IAVLFLFVVMMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILPTKLSAT 121 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + + + N+E +G +LYT Y + +S ILL+++IGAIVL + +KRQ Sbjct: 122 YLTYTVYAGKIHSWTNLETLGNLLYTTYFFLFLVSSLILLVALIGAIVLTMHKTTKVKRQ 181 Query: 175 DISKQLESNPDNSIVMVK 192 D+ Q + N+I V+ Sbjct: 182 DVFIQNAIDFQNTIKKVR 199 >gi|78485171|ref|YP_391096.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Thiomicrospira crunogena XCL-2] gi|78363457|gb|ABB41422.1| NADH dehydrogenase I chain J [Thiomicrospira crunogena XCL-2] Length = 211 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 4/201 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYL + +++ S+ +V++V+NP+ + L+ F+ AG++L AEF+ ++ ++ Sbjct: 1 MTFEQFIFYLLAGISVFSALMVISVKNPVKAALWLVLTFIATAGVWLTAQAEFLGLVLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI++ + R L+ F E Sbjct: 61 VYVGAVMVLFLFVVMMLDINLAQLKEGFTRYLPLGVLAATAIFALMYLVLGPERFGLEQF 120 Query: 121 LSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDI 176 + G +N ++I LYT + Y ++ +LL+ ++ AI L LR R +++ QDI Sbjct: 121 AAPQSAGGEYSNTKSIAVPLYTTHVYAFILAAVLLLVGIVAAITLTLRRRPPKEVLYQDI 180 Query: 177 SKQLESNPDNSIVMVKVKSGK 197 KQ+ + MVK+ + K Sbjct: 181 DKQVRVQASDRFKMVKMDAVK 201 >gi|28198180|ref|NP_778494.1| NADH dehydrogenase subunit J [Xylella fastidiosa Temecula1] gi|28056250|gb|AAO28143.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xylella fastidiosa Temecula1] Length = 222 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 116/203 (57%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FYLFS + + ++ V++VR+P+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 2 MDWVNIAFYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLDID + E + +G G++ +++V M + Sbjct: 62 VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPF 121 Query: 120 ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +N+ + L+T + +P E + IL +++I A++L LR R +K QD Sbjct: 122 PVDNAAAQAADTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + +V + + K I Sbjct: 182 SQQTRVKSADRLRIVSMPTEKPI 204 >gi|304321907|ref|YP_003855550.1| NADH dehydrogenase subunit J [Parvularcula bermudensis HTCC2503] gi|303300809|gb|ADM10408.1| NADH dehydrogenase subunit J [Parvularcula bermudensis HTCC2503] Length = 200 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 78/200 (39%), Positives = 117/200 (58%), Gaps = 1/200 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M F +F+ ++ V+ RNP++SV LI AF++ AGLF+L+GAE++A + +V Sbjct: 1 MGFADFAFSIFATAVVVWGLGVIFARNPVHSVMCLIMAFISTAGLFVLIGAEYLAFLLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDID R G L E+ V +++ A Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFAELRAGYARYLPFGVVVAAALVIEIGVMVTSWSGAPAAQ 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 NN E +G VLYT+Y + +I+G +LL++MIGAI+L R R+ IK QD+S+Q Sbjct: 121 APVAASDGPNNAEQLGMVLYTEYVHFFQIAGLVLLVAMIGAILLTFRQRQGIKTQDVSRQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + ++ + +V V +GKGI Sbjct: 181 VGRRREDGVEVVSVPTGKGI 200 >gi|307579281|gb|ADN63250.1| NADH dehydrogenase subunit J [Xylella fastidiosa subsp. fastidiosa GB514] Length = 229 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 116/203 (57%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FYLFS + + ++ V++VR+P+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 9 MDWVNIAFYLFSAVVVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 68 Query: 61 VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLDID + E + +G G++ +++V M + Sbjct: 69 VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMATPF 128 Query: 120 ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +N+ + L+T + +P E + IL +++I A++L LR R +K QD Sbjct: 129 PVDNAAAQAADTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 188 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + +V + + K I Sbjct: 189 SQQTRVKSADRLRIVSMPTEKPI 211 >gi|71897863|ref|ZP_00680089.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Ann-1] gi|71732418|gb|EAO34472.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Xylella fastidiosa Ann-1] Length = 221 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 115/203 (56%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FYLFS +A+ ++ V++VR+P+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVNIAFYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE-VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLDID + E + +G G++ +++V M Sbjct: 61 VYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMRMVTPF 120 Query: 120 ELSRLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +N+ + L+T + +P E + IL +++I A++L LR R +K QD Sbjct: 121 PVDNAAAQAADTSNLIWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDP 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + +V + + K I Sbjct: 181 GQQTRVKSADRLRIVSMPTEKPI 203 >gi|288942125|ref|YP_003444365.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Allochromatium vinosum DSM 180] gi|288897497|gb|ADC63333.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Allochromatium vinosum DSM 180] Length = 212 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 67/196 (34%), Positives = 117/196 (59%), Gaps = 3/196 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + L FY+F+ + + ++ +V+T +NP++SV L+ AFV++A L++LL AEF+ ++ ++VYV Sbjct: 3 EKLIFYVFALITVWAAVMVITRKNPVHSVLFLVLAFVSSAALWVLLEAEFLGIVLILVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGEL 121 GAV+V FLF++MMLDID+ + + I + A L++ A + Sbjct: 63 GAVMVLFLFVVMMLDIDLATIRAGFVQNLPLAGLIAAIMAVEILLIVGPGNFGLDAFPKP 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 L + +N +G +LY+ Y YP+EI+ ILLL+++ AI L LR R D K D ++Q+ Sbjct: 123 EPLGAEVSNTRELGLLLYSVYIYPVEIAAVILLLAIVAAIRLTLRRRPDNKYVDPARQVR 182 Query: 182 SNPD-NSIVMVKVKSG 196 + + +VK+ + Sbjct: 183 VRKGPDRVRLVKMAAE 198 >gi|121634123|ref|YP_974368.1| NADH dehydrogenase I chain J [Neisseria meningitidis FAM18] gi|120865829|emb|CAM09561.1| NADH dehydrogenase I chain J [Neisseria meningitidis FAM18] Length = 223 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR + + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMEPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|59802063|ref|YP_208775.1| hypothetical protein NGO1742 [Neisseria gonorrhoeae FA 1090] gi|194099638|ref|YP_002002769.1| NuoJ [Neisseria gonorrhoeae NCCP11945] gi|239999834|ref|ZP_04719758.1| NuoJ [Neisseria gonorrhoeae 35/02] gi|240017441|ref|ZP_04723981.1| NuoJ [Neisseria gonorrhoeae FA6140] gi|240081580|ref|ZP_04726123.1| NuoJ [Neisseria gonorrhoeae FA19] gi|240113862|ref|ZP_04728352.1| NuoJ [Neisseria gonorrhoeae MS11] gi|240118817|ref|ZP_04732879.1| NuoJ [Neisseria gonorrhoeae PID1] gi|240124356|ref|ZP_04737312.1| NuoJ [Neisseria gonorrhoeae PID332] gi|240126568|ref|ZP_04739454.1| NuoJ [Neisseria gonorrhoeae SK-92-679] gi|240129033|ref|ZP_04741694.1| NuoJ [Neisseria gonorrhoeae SK-93-1035] gi|254494617|ref|ZP_05107788.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 1291] gi|260439646|ref|ZP_05793462.1| NuoJ [Neisseria gonorrhoeae DGI2] gi|268595644|ref|ZP_06129811.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 35/02] gi|268597676|ref|ZP_06131843.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae FA19] gi|268599928|ref|ZP_06134095.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae MS11] gi|268604528|ref|ZP_06138695.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID1] gi|268682983|ref|ZP_06149845.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID332] gi|268685148|ref|ZP_06152010.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-92-679] gi|268687411|ref|ZP_06154273.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-93-1035] gi|291042887|ref|ZP_06568628.1| NADH-quinone oxidoreductase subunit J [Neisseria gonorrhoeae DGI2] gi|293398103|ref|ZP_06642308.1| NADH dehydrogenase I subunit J [Neisseria gonorrhoeae F62] gi|59718958|gb|AAW90363.1| putative NADH dehydrogenase I chain J [Neisseria gonorrhoeae FA 1090] gi|193934928|gb|ACF30752.1| NuoJ [Neisseria gonorrhoeae NCCP11945] gi|226513657|gb|EEH63002.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 1291] gi|268549033|gb|EEZ44451.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae 35/02] gi|268551464|gb|EEZ46483.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae FA19] gi|268584059|gb|EEZ48735.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae MS11] gi|268588659|gb|EEZ53335.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID1] gi|268623267|gb|EEZ55667.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID332] gi|268625432|gb|EEZ57832.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-92-679] gi|268627695|gb|EEZ60095.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae SK-93-1035] gi|291013321|gb|EFE05287.1| NADH-quinone oxidoreductase subunit J [Neisseria gonorrhoeae DGI2] gi|291611366|gb|EFF40436.1| NADH dehydrogenase I subunit J [Neisseria gonorrhoeae F62] gi|317165123|gb|ADV08664.1| hypothetical protein NGTW08_1707 [Neisseria gonorrhoeae TCDC-NG08107] Length = 223 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSVILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|319411264|emb|CBY91671.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J; NDH-1, chain J) [Neisseria meningitidis WUE 2594] Length = 223 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY+F+ + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|240014993|ref|ZP_04721906.1| NuoJ [Neisseria gonorrhoeae DGI18] gi|240116593|ref|ZP_04730655.1| NuoJ [Neisseria gonorrhoeae PID18] gi|240122062|ref|ZP_04735024.1| NuoJ [Neisseria gonorrhoeae PID24-1] gi|268602262|ref|ZP_06136429.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID18] gi|268586393|gb|EEZ51069.1| NADH dehydrogenase subunit I J [Neisseria gonorrhoeae PID18] Length = 223 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSVILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|304389076|ref|ZP_07371120.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis ATCC 13091] gi|304336949|gb|EFM03139.1| NADH-quinone oxidoreductase subunit J [Neisseria meningitidis ATCC 13091] Length = 223 Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ +I L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVASIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|309379793|emb|CBX21569.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 223 Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|296444803|ref|ZP_06886766.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylosinus trichosporium OB3b] gi|296257751|gb|EFH04815.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylosinus trichosporium OB3b] Length = 200 Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 124/200 (62%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FFYLFS + I S+F V+ RNP++SV LI AFVN AGLFLL GAEF+AMI +VVY Sbjct: 1 MAAAFFYLFSAVLIASAFAVIVARNPVHSVLFLILAFVNGAGLFLLAGAEFLAMILVVVY 60 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA--EG 119 VGAV V FLF++MMLD+D E+ + K LG+ ++ EL + A + + E Sbjct: 61 VGAVAVLFLFVVMMLDVDFAELRQGFSKHLPLGAGVGAVVLIELGMIAVGWQSAPSALEA 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + + +N +G+VLYT+Y + S +LL +MIGAIVL L HR +KRQ I++Q Sbjct: 121 AQTPIAAGVSNTAALGQVLYTKYFVFFQASALVLLTAMIGAIVLTLHHRPGVKRQKIAEQ 180 Query: 180 LESNPDNSIVMVKVKSGKGI 199 +N I + KV S G+ Sbjct: 181 NARTRENVIEIKKVPSRAGV 200 >gi|254391146|ref|ZP_05006353.1| NADH dehydrogenase subunit J [Streptomyces clavuligerus ATCC 27064] gi|197704840|gb|EDY50652.1| NADH dehydrogenase subunit J [Streptomyces clavuligerus ATCC 27064] Length = 296 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 94/193 (48%), Gaps = 10/193 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A++ + + ++ ++S L V A +L GA F+ ++ +VV Sbjct: 8 TGEAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVVQIVV 67 Query: 62 YVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ + + E K + +L + L+ N + G Sbjct: 68 YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVLLVAGLGNASLNEFNG 127 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R +Q Sbjct: 128 LGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERT--------EQ 179 Query: 180 LESNPDNSIVMVK 192 + + + V+ Sbjct: 180 ARTQREQAEERVR 192 >gi|328775205|gb|AEB39998.1| NADH dehydrogenase subunit 6 [Funaria hygrometrica] Length = 201 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 11/198 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +FS +A++SS +V+ +NP++SV I F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFSVFSSIALVSSVMVIRAKNPVHSVLFFILVFFNTSGLLVLLGLDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-----------NFMV 114 + V FLF++MML+I I R IG++ I Sbjct: 62 IAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGVIFLLEIFFIVDNDYIPILPTKLSTT 121 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + + + N+E +G +LYT Y +S ILL++MIGAIVL + +K Q Sbjct: 122 YLTYTVYAEKIQSWTNLETLGNLLYTTYFVLFLVSSLILLVAMIGAIVLTMHKTTQVKGQ 181 Query: 175 DISKQLESNPDNSIVMVK 192 D+ +Q + N+I ++ Sbjct: 182 DVFRQNAIDFKNTIKKIR 199 >gi|254674113|emb|CBA09897.1| NADH-ubiquinone oxidoreductase, chain J [Neisseria meningitidis alpha275] gi|308388471|gb|ADO30791.1| NADH dehydrogenase I chain J [Neisseria meningitidis alpha710] gi|325137078|gb|EGC59674.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis M0579] gi|325202920|gb|ADY98374.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis M01-240149] gi|325207281|gb|ADZ02733.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis NZ-05/33] Length = 223 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVYRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|164422216|gb|ABY55189.1| NADH dehydrogenase subunit 6 [Bambusa oldhamii] Length = 205 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + +GL +LLG +F AMI+ VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM +I I R S IG I E+ N + + Sbjct: 61 IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNALDSRRTI 194 >gi|294814403|ref|ZP_06773046.1| NADH-quinone oxidoreductase subunit J [Streptomyces clavuligerus ATCC 27064] gi|326442793|ref|ZP_08217527.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces clavuligerus ATCC 27064] gi|294327002|gb|EFG08645.1| NADH-quinone oxidoreductase subunit J [Streptomyces clavuligerus ATCC 27064] Length = 305 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 96/196 (48%), Gaps = 3/196 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A++ + + ++ ++S L V A +L GA F+ ++ +VV Sbjct: 17 TGEAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVVQIVV 76 Query: 62 YVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ + + E K + +L + L+ N + G Sbjct: 77 YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVLLVAGLGNASLNEFNG 136 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R +Q Sbjct: 137 LGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERTEQARTQ-REQ 195 Query: 180 LESNPDNSIVMVKVKS 195 E + + + + Sbjct: 196 AEERVRAGVQLPPLPA 211 >gi|237748882|ref|ZP_04579362.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229380244|gb|EEO30335.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 211 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 114/196 (58%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY+F + ++++ V+T R+P+++V L+ +F A +++LL AEF+A+I L+ Sbjct: 4 MQLTNVLFYVFGAIMVLAALRVITSRHPVHAVLYLVLSFFTGAAIWILLKAEFLALILLL 63 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MM+D+D+ + ++ + + +G+ + + + Sbjct: 64 VYVGAVMVLFLFVVMMMDLDLTELKRAARKNMISATIVGVAIVLEMSAVLFRGFWMIDSH 123 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + K IGK L+T Y + +EI+ ILL+++I A+ L R R D K +K + Sbjct: 124 VPKSASKIGLTAEIGKALFTDYLFNVEIAAIILLVALIAAVTLTFRKRTDAKYTSANKAI 183 Query: 181 ESNPDNSIVMVKVKSG 196 ++ I +V++K+ Sbjct: 184 HVRAEDRIRIVEMKAE 199 >gi|161870813|ref|YP_001599986.1| NADH dehydrogenase I chain J [Neisseria meningitidis 053442] gi|161596366|gb|ABX74026.1| NADH dehydrogenase I chain J [Neisseria meningitidis 053442] Length = 223 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSTILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTNLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|325130979|gb|EGC53706.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis OX99.30304] gi|325205337|gb|ADZ00790.1| NADH:ubiquinone dehydrogenase, J subunit [Neisseria meningitidis M04-240196] Length = 223 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A L++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ +I L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVASIALVHRKTTNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|217979058|ref|YP_002363205.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocella silvestris BL2] gi|217504434|gb|ACK51843.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylocella silvestris BL2] Length = 201 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 125/200 (62%), Gaps = 3/200 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + +LFFYLFS + I S+F V+T RNP++SV LI AF NAAGLFLLLGAEF+AM+ +VVY Sbjct: 2 IAALFFYLFSAVLIASAFAVITSRNPVHSVLFLILAFFNAAGLFLLLGAEFLAMLLVVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAEG 119 VGAV V FLF++MMLD+D E + + +G I+ EL++ + V S Sbjct: 62 VGAVAVLFLFVVMMLDVDFAEFKQGFMRYLPVGGAIGAIVLLELVLVVGGWRVDAASLAN 121 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 S +N +G+VLYTQYA +G +LL +MIGAI+L L H+ IKRQDI+ Q Sbjct: 122 VASPAPPAMSNTLALGRVLYTQYACLFIAAGMVLLTAMIGAIILTLHHKVGIKRQDIAAQ 181 Query: 180 LESNPDNSIVMVKVKSGKGI 199 P +++ + K +G+ Sbjct: 182 NARTPKDAVELRKKSFRQGV 201 >gi|63025105|ref|YP_232799.1| NADH dehydrogenase subunit 6 [Geodia neptuni] gi|37961467|gb|AAP59164.1| NADH dehydrogenase subunit 6 [Geodia neptuni] Length = 185 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 102/177 (57%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+ IIS +V++ NP++SV L+ AF+ A+ LF+LL EF+A+I L+VYVGA+ Sbjct: 4 LFYLFALSIIISGVMVISALNPVHSVLWLVVAFIGASALFILLEVEFLALILLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IMML++ R G + +E+++ + + + Sbjct: 64 AILFLFVIMMLNLTGLEGTDRSNYLPAGFIIGIVFLSEVLILQTRISTVESYRNSNWNFM 123 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + +N+E +G+VLYT Y Y ++ ILL+++IGAIVL R IKRQDI Q Sbjct: 124 EASNIEVLGRVLYTNYCYLFILASLILLVALIGAIVLTHDTRVKIKRQDIFIQTSRQ 180 >gi|83592899|ref|YP_426651.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodospirillum rubrum ATCC 11170] gi|83575813|gb|ABC22364.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodospirillum rubrum ATCC 11170] Length = 205 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 131/204 (64%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++Q+L FY+ + + + S+F+VV RNP++SV LI FVN+AGLFLL+GAEFVAM+ +V Sbjct: 1 MIIQALIFYMLAAIMVASAFMVVISRNPVHSVLWLILTFVNSAGLFLLMGAEFVAMVVVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLDI+ + + E LG+ +L AE+ V A + + Sbjct: 61 VYVGAVAVLFLFVVMMLDINYLRLREGFLSYMPLGAAMGVVLLAEIAVLAGGWAMAPDAM 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 L R+ N + IG+VLYT Y Y + +G +LL++MIG+I+L R +KRQ+ Sbjct: 121 GLRRVPMVDPAALTNTQAIGQVLYTDYIYLFQAAGLVLLVAMIGSIMLTHRANPLVKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 ++ Q+ + ++ + KV +G+GI Sbjct: 181 VADQIARRKERTLKLNKVPTGRGI 204 >gi|253807608|gb|ACT36186.1| NADH dehydrogenase subunit 6 [Helicosporidium sp. ex Simulium jonesi] Length = 207 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 18/206 (8%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FY+F+ ++S V+ RNP+YSV LI F NA+GL +LLG +F AMI LVVYVG Sbjct: 2 DLLFYIFASSLLLSGVFVIQSRNPVYSVLFLILGFFNASGLLVLLGLDFFAMIFLVVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG----- 119 A+ V FLF++MML+I +E +K R +G L ++ +N + S Sbjct: 62 AIAVLFLFVVMMLNIKVEEFHEKKLRYLPVGGILGFLFLFEVLILTNHDIISLVPYELNT 121 Query: 120 -------------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + S N + +G ++YT Y Y ++ ILL++MIGAIVL ++ Sbjct: 122 SYLKDLFNQTNFIDWSSHYSTSNTIHALGNIIYTYYFYFFLMASLILLVAMIGAIVLTMQ 181 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVK 192 +K+Q + Q + +I + Sbjct: 182 KNLQVKKQQVYLQNTRDFTKTIRKIN 207 >gi|262186704|ref|YP_003275963.1| NADH dehydrogenase subunit 6 [Pleurozia purpurea] gi|237780701|gb|ACR19347.1| NADH dehydrogenase subunit 6 [Pleurozia purpurea] Length = 199 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 11/198 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+F +A++S +V+ +NP++SV LI F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFYVFVVLALVSGAMVIRAKNPVHSVLFLISVFRNTSGLLVLLGPDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-----------NFMV 114 + V F F++MML IE R IG++ I + Sbjct: 62 IAVSFSFVVMMLHTRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILSTKSGAT 121 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + + + N E +G +LYT Y + +S I L+++IGAIVL + +KRQ Sbjct: 122 YLTYTVYAEKIHSWTNSETLGNLLYTTYFFLFLVSSLISLVALIGAIVLTMHKTTRVKRQ 181 Query: 175 DISKQLESNPDNSIVMVK 192 D+ Q + N+I V+ Sbjct: 182 DVFIQNAIDFRNTIRKVR 199 >gi|144900795|emb|CAM77659.1| NADH-quinone oxidoreductase chain 10 [Magnetospirillum gryphiswaldense MSR-1] Length = 203 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 78/202 (38%), Positives = 120/202 (59%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + +L FY+F+ +A+ S +V++ RNP++SV LI F NAAGLFLLLGAEF+AM+ +VVY Sbjct: 2 IAALIFYMFAGLAVASGVMVISARNPVHSVLFLILCFFNAAGLFLLLGAEFLAMVLVVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE---- 118 VGAV V FLF++MMLDI+ + IG++ + F+ + Sbjct: 62 VGAVAVMFLFVVMMLDINFLRLREGVAQYLPTGAVIGLVLLVELAVMFGGWAFAPDVEAL 121 Query: 119 -GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 V + N E +G+++YT+Y Y + SG +LL++M+GAI+L R R +++Q I Sbjct: 122 LAAPIPAVSEMTNTEALGRLIYTKYVYLFQASGVVLLVAMVGAILLTHRSRTGVRKQKIY 181 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ NS+ + KV +G GI Sbjct: 182 DQVGRTAANSVEIRKVSTGGGI 203 >gi|217331580|gb|ACK38306.1| NADH dehydrogenase subunit 6 [Isoetes engelmannii] gi|314908352|gb|ADT62123.1| NADH dehydrogenase subunit 6 [Isoetes engelmannii] Length = 208 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 104/180 (57%), Gaps = 10/180 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +FS +A++S +V+ +NP++SV LI F + +GL L LG +F +MI LVVYVGA Sbjct: 2 ILFSVFSSIALVSGVMVMRAKNPVHSVLFLILVFCHTSGLLLWLGLDFFSMILLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MML+I I E+ E + +G IL E+ + N + ++ L Sbjct: 62 IAVLFLFVVMMLNIKIAEIHEDVLRYLPVGGIIGFILGWEMFLIVDNDYIPILSTNMNTL 121 Query: 125 --------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQD 175 + N+E IG +LYT Y +S ILL++MIGAIV+ + HR +KRQ+ Sbjct: 122 SYTVCAGKIQSWTNLETIGNLLYTIYLVWFLVSSLILLVAMIGAIVITMEHRTTRVKRQN 181 >gi|319638826|ref|ZP_07993584.1| NADH dehydrogenase subunit I J [Neisseria mucosa C102] gi|317399730|gb|EFV80393.1| NADH dehydrogenase subunit I J [Neisseria mucosa C102] Length = 223 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + + + VT +NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MTFSAILFYILAAIVLYGAVRTVTAKNPVHAALHLVLTFCVSAMIWMLMQAEFLGVTLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G L A ++ +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEAMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NN+ ++G +YT Y P E++ +LLL M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTFNPKRMDPAD 180 Query: 179 QLESNPDN-SIVMVKVKSGK 197 Q++ D + +VK+++ K Sbjct: 181 QVKVRADQGRMRLVKMEAVK 200 >gi|284794666|ref|YP_003412024.1| NADH dehydrogenase subunit 6 [Lubomirskia baicalensis] gi|284098135|gb|ADB78066.1| NADH dehydrogenase subunit 6 [Lubomirskia baicalensis] Length = 195 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 11/188 (5%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+ IIS +V++ NP++SV LI AF +A+ LF+LL EF+A+I L+VYVGA+ Sbjct: 4 LFYLFTLGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-----------FMVF 115 + FLF+IMML++ F IG++ I Sbjct: 64 AILFLFVIMMLNLTDLEGGGDMSNYLPAGFIIGVVFLFEIAHVMGGRMVSWPHGGISGTL 123 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 S++ ++ NVE +G+VLYT Y Y I+ FILL++MIGAIVL + +IKRQD Sbjct: 124 SSDIAQPAILLGNPNVEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHDSKTEIKRQD 183 Query: 176 ISKQLESN 183 I Q Sbjct: 184 IFIQTSRQ 191 >gi|163855996|ref|YP_001630294.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella petrii DSM 12804] gi|163259724|emb|CAP42025.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella petrii] Length = 215 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 73/198 (36%), Positives = 119/198 (60%), Gaps = 7/198 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + +I++F V+T R+P+ +V LI AF NAA L++LLGAEF+A++ ++ Sbjct: 1 MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSA 117 VYVGAV+V FLF++MMLDI I+ + G +G+L ++V +F++ + Sbjct: 61 VYVGAVMVLFLFVVMMLDIRIDT----LRHGLKTYLPLGLLIGAVLVVEMSFVLGATWYG 116 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 G + + NN +G+V+YTQY Y +E+ +LL+ MI AI L LR RRD K D S Sbjct: 117 AGPQASMAADYNNTRALGEVMYTQYVYAVEVGAALLLVGMIAAIALTLRRRRDAKYNDPS 176 Query: 178 KQLESNPDNSIVMVKVKS 195 + + +V + + Sbjct: 177 AAVRVRAKDRFRLVSMPA 194 >gi|194366595|ref|YP_002029205.1| NADH dehydrogenase subunit J [Stenotrophomonas maltophilia R551-3] gi|194349399|gb|ACF52522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Stenotrophomonas maltophilia R551-3] Length = 218 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F++F+ A +S+ V++VRNP+++V L+ F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVNIAFWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFS 116 VYVGAV+V FLF++MMLDID R + + LI + Sbjct: 61 VYVGAVMVLFLFVVMMLDIDPTKLREGWVRYLPVGLIVAVAMLVQMLILIGVKGRAVTPF 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + L +NV + + L+T+Y P E + IL ++++ A++L LR R +K Q+ Sbjct: 121 PADNAAALAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNP 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q D + MVK+ + + Sbjct: 181 GEQTMVKADQRLRMVKMGAEAPV 203 >gi|164420802|ref|YP_001648470.1| NADH dehydrogenase subunit 6 [Ephydatia muelleri] gi|158938918|gb|ABW83846.1| NADH dehydrogenase subunit 6 [Ephydatia muelleri] Length = 196 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 72/189 (38%), Positives = 101/189 (53%), Gaps = 12/189 (6%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+ IIS +V++ NP++SV LI AF +A+ LF+LL EF+A+I L+VYVGA+ Sbjct: 4 LFYLFTLGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-------- 118 + FLF+IMML++ F IG++ I + S Sbjct: 64 AILFLFVIMMLNLTDLEGGGDMSNYLPAGFIIGVVFLFEIAHVMGGRMVSWPHGGISGTL 123 Query: 119 ----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ NVE +G+VLYT Y Y I+ FILL++MIGAIVL + +IKRQ Sbjct: 124 SSDIAAQPAILLGNPNVEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHDSKTEIKRQ 183 Query: 175 DISKQLESN 183 DI Q Sbjct: 184 DIFIQTSRQ 192 >gi|164421001|ref|YP_001648496.1| NADH dehydrogenase subunit 6 [Topsentia ophiraphidites] gi|158938931|gb|ABW83858.1| NADH dehydrogenase subunit 6 [Topsentia ophiraphidites] Length = 188 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 5/182 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+F IIS +V++ NP++SV LI AF +AA LF+LL +F+A+I L+VYVGA+ Sbjct: 4 LFYLFAFNVIISGIMVISALNPVHSVLWLIVAFTSAAALFILLEVDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGEL 121 + FLF+IMML++ F IG++ ++ A+ + + Sbjct: 64 AILFLFVIMMLNLTDLGGGGDMSNYLPAGFIIGVVFLFEVLIFQSRMATFNLSYINYPHN 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + K N+E +G+VLYT Y Y ++ FILL++MIGAIVL R +IKRQDI Q Sbjct: 124 WDFIEKAPNIEVLGRVLYTNYYYLFIMASFILLVAMIGAIVLTHSTREEIKRQDIFIQTS 183 Query: 182 SN 183 Sbjct: 184 RQ 185 >gi|89280733|ref|YP_514639.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group] gi|289065047|ref|YP_003433858.1| NADH dehydrogenase subunit 6 [Oryza rufipogon] gi|74100100|gb|AAZ99264.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group] gi|74100155|gb|AAZ99318.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|74100209|gb|AAZ99371.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|285026129|dbj|BAI67962.1| NADH dehydrogenase subunit 6 [Oryza rufipogon] gi|285026159|dbj|BAI67991.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group] Length = 205 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + AGL +LLG +F AMI+ VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTAGLLILLGLDFSAMISPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V FLF++MM +I I R S IG++ E+ N + + Sbjct: 61 IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ +S ILL++MIGAIVL + ++RQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVQRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNALDSRRTI 194 >gi|62161302|ref|YP_214868.1| NADH dehydrogenase subunit 6 [Axinella corrugata] gi|55275033|gb|AAV49311.1| NADH dehydrogenase subunit 6 [Axinella corrugata] Length = 183 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 101/177 (57%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF I+S +V++ NP++SV LI AF +A LF+LL EF+A++ L+VYVGA+ Sbjct: 4 LFYLFXLSVILSGIMVISAFNPVHSVLWLIVAFTSATALFILLEVEFIALMFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IMML++ F IG++ S+F S+ L+ Sbjct: 64 AILFLFVIMMLNLTDXEGGEDMSNYLPAGFIIGVVFLINCRMVSHFGQQSSYYISWDLIE 123 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 K N+E +G+VLYT Y Y I+ FILL++MIG IVL R +IKRQ+I Q Sbjct: 124 KAPNIEVLGRVLYTNYYYLFIIASFILLVAMIGVIVLTHDTRSEIKRQNIFLQTSRQ 180 >gi|317097065|ref|YP_004123207.1| NADH dehydrogenase subunit 6 [Oscarella viridis] gi|308912700|gb|ADO51460.1| NADH dehydrogenase subunit 6 [Oscarella viridis] Length = 197 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 72/191 (37%), Positives = 111/191 (58%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY+F+ IIS +V++ NPI+SVF LI F+ A+ LF+LLG +F+A+I L+VYVGA+ Sbjct: 4 LFYIFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-------- 117 + FLF+IMML++ D+E +GS +L E+++ +S Sbjct: 64 AILFLFVIMMLNLTDLEGGGDMSNYIPIGSVIGVLLLFEVLIMGREATAYSYRDIDHECL 123 Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + S + K +N+E +G++LYT Y Y I+ FILL++MIGAIVL ++K Sbjct: 124 RGGVDAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGTELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q + Sbjct: 184 RQDLFTQTSRS 194 >gi|307328630|ref|ZP_07607803.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces violaceusniger Tu 4113] gi|306885742|gb|EFN16755.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces violaceusniger Tu 4113] Length = 303 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 91/198 (45%), Gaps = 2/198 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++L F++ +A+I + + + ++S L + A +L GA F+ ++ +VV Sbjct: 14 TGEALQFWVLGTVAVIGALCTILMHKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVV 73 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L +++CA Sbjct: 74 YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGILLCAGLGNASLTTWNG 133 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R ++ Sbjct: 134 LGQANAGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RARTQREQA 191 Query: 182 SNPDNSIVMVKVKSGKGI 199 + V G+ Sbjct: 192 EARVRTGRNVPPLPAPGV 209 >gi|22550345|ref|NP_689370.1| NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum] gi|22417011|gb|AAM96610.1|AF494279_15 NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum] Length = 195 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 6/194 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F LFS +A++S+ +V++ +NP++S+ LI F NA+ L +LLG +F AMI LVVYVG Sbjct: 2 TILFCLFSSIALVSAGMVISAKNPVHSILFLILVFCNASALLVLLGLDFFAMIFLVVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA------SNFMVFSAE 118 A+ V FLF++MML+I+I R I ++ + S + A Sbjct: 62 AIAVLFLFVVMMLNINIAEIHENVVRYLPIGGIIALIFLLEMFLVVEGLPTSTIIQAPAY 121 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + + N+E +G +LYT Y I ILL++MIGAIVL + +KRQD+ Sbjct: 122 TIFAEKIESLTNLEALGNLLYTTYFLLFLICSLILLIAMIGAIVLTMHKTTKVKRQDVFL 181 Query: 179 QLESNPDNSIVMVK 192 Q + +I ++ Sbjct: 182 QNSVDFSTTIRKIR 195 >gi|188991038|ref|YP_001903048.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris str. B100] gi|167732798|emb|CAP50992.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas campestris pv. campestris] Length = 219 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 108/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVTIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFS 116 VYVGAV+V FLF++MMLDID + + + LI Sbjct: 61 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPVGVIVAVAMLAQMVTLIGVKGRLATPF 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 121 PVDNAAAQAADTSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKMQNA 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + MVK+ K + Sbjct: 181 SEQSRVRSTDRLRMVKMAVEKPV 203 >gi|188580276|ref|YP_001923721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium populi BJ001] gi|179343774|gb|ACB79186.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium populi BJ001] Length = 206 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 87/204 (42%), Positives = 125/204 (61%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FFYLF+ +A+ S F+V+ RNP+ SV LI AFVNAAGLF+++GAEF+AMI +V Sbjct: 1 MTAAAAFFYLFASLAVASGFMVIAARNPVTSVLFLILAFVNAAGLFVMMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D + ++ +G I EL++ + + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAALRQGFQRYLPIGGLIGAIFLIELLLVVGTWTIDPGLV 120 Query: 120 EL----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N E +G+VLYT Y Y +I+G ILL++MIGAIVL LR R +KRQ+ Sbjct: 121 QAPLGRAAHGETATNTEALGRVLYTDYVYAFQIAGLILLVAMIGAIVLTLRERTGVKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 IS Q ++ +KV S +G+ Sbjct: 181 ISVQNARTQTMAVDTIKVPSRQGV 204 >gi|163868364|ref|YP_001609573.1| NADH dehydrogenase subunit J [Bartonella tribocorum CIP 105476] gi|161018020|emb|CAK01578.1| NADH dehydrogenase I chain J [Bartonella tribocorum CIP 105476] Length = 206 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 82/191 (42%), Positives = 124/191 (64%), Gaps = 5/191 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + + S+ +V+T RNP++SV LI AF NAA LFLL GAEF+ I LVVYVGAV V FLF+ Sbjct: 16 IMLTSAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGFILLVVYVGAVAVLFLFV 75 Query: 74 IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRLVFKG 128 +MMLD+D E+ + +G+ I+A ELI+ + ++ + + + + Sbjct: 76 VMMLDVDFAELKSGTLRYAPIGALIGVIIAIELIIVFVSSHFSPVLRTHVTQPMPDLGQR 135 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188 N + +G +LYT Y + +I+G ILL++MIGAIVL LRH+ +KRQ I+KQ+ +++I Sbjct: 136 TNTQALGDILYTDYVFYFQIAGIILLVAMIGAIVLTLRHKSGVKRQSIAKQVSRTVESAI 195 Query: 189 VMVKVKSGKGI 199 + +V+SGKGI Sbjct: 196 EIKQVESGKGI 206 >gi|170676855|ref|YP_001742098.1| NADH dehydrogenase subunit 6 [Suberites domuncula] gi|170649721|emb|CAM84213.1| NADH dehydrogenase subunit 6 [Suberites domuncula] Length = 189 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 105/180 (58%), Gaps = 3/180 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+F I+S +V++ NP++SVF LI AF +AA LF+LL EF+A I L+VYVGA+ Sbjct: 4 LFYLFAFGVILSGIMVISALNPVHSVFWLIVAFTSAALLFILLEVEFIAFIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFS--AEGELSR 123 + FLF+IMML++ P+ IG++ ++ S++ S + Sbjct: 64 AILFLFVIMMLNLTDLGNNPQDMSNYMPTGLIIGVVVILEVLIFSSWKSNSEGSPYLRWD 123 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + K +N+E +G+VLYT Y Y ++ FILL +MIGAIVL IKRQD Q+ Sbjct: 124 YIEKTSNIEVLGRVLYTDYYYLFILASFILLSAMIGAIVLTQTKSVGIKRQDSFTQVSRQ 183 >gi|114330934|ref|YP_747156.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosomonas eutropha C91] gi|114307948|gb|ABI59191.1| NADH dehydrogenase subunit J [Nitrosomonas eutropha C91] Length = 201 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 70/203 (34%), Positives = 124/203 (61%), Gaps = 10/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ Q FY + + II + V+T+RNP+YSV L+ AFV ++GL++LL AEF+A+ +V Sbjct: 1 MIFQDFVFYSLASVVIICALGVITLRNPVYSVLLLVLAFVTSSGLWILLEAEFLAIALVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++ + + GF F G + A ++ + ++ S + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLD----QMREGFWKWFPFGAILAFIMTVEMSMVLMSKQFS 116 Query: 121 LSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + +N + +G+++YT+Y Y E++ ILL++M+ AI + LRHR D K Sbjct: 117 SEIIQTPEYKSVDYSNTKELGRLIYTEYVYVFELAAVILLVAMVAAIAITLRHRTDKKSS 176 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 + S+Q+ + + + ++ + + K Sbjct: 177 NASRQIAVSRNERLKVISMPAEK 199 >gi|187923349|ref|YP_001894991.1| NADH dehydrogenase subunit J [Burkholderia phytofirmans PsJN] gi|187714543|gb|ACD15767.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia phytofirmans PsJN] Length = 230 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 126/207 (60%), Gaps = 14/207 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+F+ + ++S V+T RNP+ S L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MEFTTVLFYIFALLLVVSGLKVITSRNPVSSALFLVLAFFNAAAIWMLLQAEFLAILLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+I+V KR + +G +IV + +++ G Sbjct: 61 VYVGAVMVLFLFVVMMLDINIDVLRKDFKRFVPMATLVG----AIIVIETALILWHGYGA 116 Query: 121 LSRL----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +N IGKV+YT Y + E++G +LL+++I AI L H++D Sbjct: 117 TATALRDTTAAANGMGDWSNTRLIGKVIYTDYIFAFEVAGLVLLVAIIAAIALTASHKKD 176 Query: 171 IKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ++S+Q++ + + +VK+KS K Sbjct: 177 SKRQNVSEQVKVRAQDRVRVVKMKSEK 203 >gi|317134283|ref|YP_004123166.1| NADH dehydrogenase subunit 6 [Pseudocorticium jarrei] gi|308912684|gb|ADO51445.1| NADH dehydrogenase subunit 6 [Pseudocorticium jarrei] Length = 197 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 71/191 (37%), Positives = 109/191 (57%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY+ + IIS +V++ NPI+SVF LI F A+ LF+LLG +F+A+I L+VYVGA+ Sbjct: 4 LFYILALGVIISGIMVISALNPIHSVFWLIVVFSGASALFILLGIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-------- 117 + FLF+IMML++ D+E +GS +L E+++ +S Sbjct: 64 AILFLFVIMMLNLTDLEGDGDMSNYIPIGSIIGVLLLFEVLIMGREATAYSYRDIDHECL 123 Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + S + K +N+E +G++LYT Y Y I+ FILL++MIGAIVL ++K Sbjct: 124 KRGGDAWDASIEIIKTSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q + Sbjct: 184 RQDLFTQTSRS 194 >gi|21231951|ref|NP_637868.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767922|ref|YP_242684.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. campestris str. 8004] gi|21113681|gb|AAM41792.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573254|gb|AAY48664.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas campestris pv. campestris str. 8004] Length = 219 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVTIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFS 116 VYVGAV+V FLF++MMLDID + + + LI + Sbjct: 61 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPVGVIVAVAMLAQMVTLIGVKARLATPF 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 121 PVDNAAAQATDTSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKMQNA 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 S+Q + + MVK+ K + Sbjct: 181 SEQSRVRSTDRLRMVKMAVEKPV 203 >gi|190575269|ref|YP_001973114.1| NADH dehydrogenase subunit J [Stenotrophomonas maltophilia K279a] gi|190013191|emb|CAQ46824.1| putative NADH-ubiquinone oxidoreductase, chain J [Stenotrophomonas maltophilia K279a] Length = 218 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 107/203 (52%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F++F+ A +S+ V++VRNP+++V L+ F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVNIAFWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE----LIVCASNFMVFS 116 VYVGAV+V FLF++MMLDID R + + LI + Sbjct: 61 VYVGAVMVLFLFVVMMLDIDPTKMREGWVRYLPVGLIVAVAMLVQMLILIGVKGRAVTPF 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +NV + + L+T+Y P E + IL ++++ A++L LR R +K Q+ Sbjct: 121 PADNAAAVAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNP 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + MVK+ + + Sbjct: 181 GEQTMVKAGQRLRMVKMGAEAPV 203 >gi|317097445|ref|YP_004123644.1| NADH dehydrogenase subunit 6 [Oscarella tuberculata] gi|317134139|ref|YP_004123302.1| NADH dehydrogenase subunit 6 [Oscarella lobularis] gi|308912624|gb|ADO51389.1| NADH dehydrogenase subunit 6 [Oscarella tuberculata] gi|308912746|gb|ADO51503.1| NADH dehydrogenase subunit 6 [Oscarella lobularis] Length = 197 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 71/191 (37%), Positives = 111/191 (58%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY+F+ IIS +V++ NPI+SVF LI F+ A+ LF+LLG +F+A+I L+VYVGA+ Sbjct: 4 LFYIFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-------- 117 + FLF+IMML++ D+E +GS +L E+++ ++ Sbjct: 64 AILFLFVIMMLNLTDLEGGGDMSNYIPIGSGIGVLLLFEVLIMGREATAYNYRDIDHECL 123 Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + S + K +N+E +G++LYT Y Y I+ FILL++MIGAIVL ++K Sbjct: 124 KGGVDAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q + Sbjct: 184 RQDLFTQTSRS 194 >gi|126695328|ref|YP_001090215.1| NADH dehydrogenase subunit 6 [Oscarella carmela] gi|317097411|ref|YP_004123616.1| NADH dehydrogenase subunit 6 [Oscarella malakhovi] gi|116876184|gb|ABK30948.1| NADH dehydrogenase subunit 6 [Oscarella carmela] gi|312162788|gb|ADO51545.1| NADH dehydrogenase subunit 6 [Oscarella malakhovi] Length = 197 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 71/191 (37%), Positives = 111/191 (58%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY+F+ IIS +V++ NPI+SVF LI F+ A+ LF+LLG +F+A+I L+VYVGA+ Sbjct: 4 LFYIFALGIIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--------- 116 + FLF+IMML++ D+E +GS +L E+++ ++ Sbjct: 64 AILFLFVIMMLNLTDLEGGGDMSNYIPIGSIIGVLLLFEVLIMGREATGYNYRDIDHECL 123 Query: 117 ----AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + S + K +N+E +G++LYT Y Y I+ FILL++MIGAIVL ++K Sbjct: 124 RGGVNAWDASIEIIKSSNIEVLGRILYTDYYYLFIIASFILLVAMIGAIVLTHELGAELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q + Sbjct: 184 RQDLFTQTSRS 194 >gi|254491551|ref|ZP_05104730.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Methylophaga thiooxidans DMS010] gi|224463029|gb|EEF79299.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Methylophaga thiooxydans DMS010] Length = 199 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 70/196 (35%), Positives = 118/196 (60%), Gaps = 6/196 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY F+ + + ++ +V+TVRNP+ + L+ AF +A ++L+L AEF+A+ ++VY Sbjct: 1 MEKIIFYAFAAILLFAATMVITVRNPVRAALFLVLAFFTSAAIWLMLQAEFLAISLVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV+V FLF++MMLDID+ + GF +GI+ A LIV ++ + + +++ Sbjct: 61 VGAVLVLFLFVVMMLDIDLAPLQE----GFTKYLPLGIIVAALIVAEMITVLNAPQFDIA 116 Query: 123 RLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G +N +G++LYT Y YP EI+ IL ++++ AI L LR K QD KQ+ Sbjct: 117 ATAVAGESNTRMLGRLLYTVYVYPFEIASVILTVAIVAAITLTLREHSR-KLQDPGKQVA 175 Query: 182 SNPDNSIVMVKVKSGK 197 + +V ++S K Sbjct: 176 VRKQERVRLVDLRSAK 191 >gi|154248543|ref|YP_001419501.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xanthobacter autotrophicus Py2] gi|154162628|gb|ABS69844.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xanthobacter autotrophicus Py2] Length = 204 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 90/204 (44%), Positives = 131/204 (64%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FFYLF+F+ + S+F+V++ RNP+ SV LI AFVNAAGLF+L+GAEF+A+I +V Sbjct: 1 MNVAAAFFYLFAFVLVASAFMVISSRNPVQSVLFLILAFVNAAGLFILIGAEFLALILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----- 115 VYVGAV V FLF++MMLD+D + IG++ +V + V Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFVELRQGFLQYLPVGLVIGLIFLAELVLVAGAWVMGPGVA 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 SA NV+ IG+VLYT Y Y + +GF+LL++MIGAIVL LRH+ ++KRQ+ Sbjct: 121 SAVKSAPPSAGDVGNVQAIGQVLYTDYIYFFQAAGFVLLVAMIGAIVLTLRHKVNVKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 IS Q+ ++ +VKV+ G+G+ Sbjct: 181 ISAQVARTAKTAMDVVKVRPGQGL 204 >gi|160872240|ref|ZP_02062372.1| NADH-quinone oxidoreductase, j subunit [Rickettsiella grylli] gi|159121039|gb|EDP46377.1| NADH-quinone oxidoreductase, j subunit [Rickettsiella grylli] Length = 198 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 69/199 (34%), Positives = 113/199 (56%), Gaps = 6/199 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + +QS F++F+ + I S+ + + RN + S L+ F +AA L++LL AEF+ +I ++ Sbjct: 2 ISIQSCVFFIFAGVLITSALMTIISRNSVRSALFLVLTFFSAAALWILLEAEFLGLILIL 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+ FLF+IM L++D + K+ GF+ +L +++ VF G Sbjct: 62 VYVGAVMTLFLFVIMTLNLD----KTEKQYGFVPYLVWAVLGVLILLALLIDAVFPLTGN 117 Query: 121 --LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 L L +N + +G VLYTQYAYP EI+G +LL+ +I I L R +R K Sbjct: 118 KILIPLAANESNTQALGNVLYTQYAYPFEITGVLLLVGIIATIALSFREKRLNKAISPEL 177 Query: 179 QLESNPDNSIVMVKVKSGK 197 QL+ P + + ++K+ + K Sbjct: 178 QLKIKPSDRLRIIKMPTEK 196 >gi|326403105|ref|YP_004283186.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum AIU301] gi|325049966|dbj|BAJ80304.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum AIU301] Length = 216 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY+F+ + ++S+ +V+T RNP++SV LI AF+NA LF+L GAEF+AM+ ++VYVG Sbjct: 4 TLAFYVFAAILLLSACMVITARNPVHSVLFLILAFINAGALFVLAGAEFLAMVLVIVYVG 63 Query: 65 AVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 AV V FLF++MMLD+D E ++ LG IL E+ A + + A S+ Sbjct: 64 AVAVLFLFVVMMLDVDFAALREGFQRYAPLGLLIGFILMVEIGAVAIGWTITPAAHLASQ 123 Query: 124 LVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + +N +G ++YT+Y + E+ +LL++MIGAIVL R +RQDIS Q + Sbjct: 124 VPMPAHLSNTAALGDLIYTRYMFAFELVALLLLVAMIGAIVLTHSGERRSRRQDISTQHQ 183 Query: 182 SNPDNSIVMVKVKSGKG 198 D ++ MVK+ GKG Sbjct: 184 RPIDETLTMVKLGIGKG 200 >gi|329118914|ref|ZP_08247609.1| NADH-quinone oxidoreductase subunit J [Neisseria bacilliformis ATCC BAA-1200] gi|327464942|gb|EGF11232.1| NADH-quinone oxidoreductase subunit J [Neisseria bacilliformis ATCC BAA-1200] Length = 218 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 62/198 (31%), Positives = 113/198 (57%), Gaps = 3/198 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY + + + + VTV+NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MSFQLIMFYTLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MML+ID+E R + +G+L A +++ S +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDVEEMRKGFWRNAPVAATVGVLMAVALILILVSPKTNLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + +NV +G+ +YT Y P E++ +LLL M+ AI L+ R + KR D ++ Sbjct: 121 GAMVDVPADHSNVRELGRQIYTTYMLPFELAAVLLLLGMVAAIALVHRKSNNPKRMDPAE 180 Query: 179 QLESNPDN-SIVMVKVKS 195 Q++ + + +VK++ Sbjct: 181 QVKVDASKGRMKLVKMQP 198 >gi|297159517|gb|ADI09229.1| NADH dehydrogenase subunit J [Streptomyces bingchenggensis BCW-1] Length = 312 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 93/184 (50%), Gaps = 3/184 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ + +A+I + + +R ++S L + A +L GA F+ ++ +VV Sbjct: 11 TGEAVQFWILATVAVIGALGTILMRKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVV 70 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L +++CA Sbjct: 71 YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGILLCAGIGNASLKSFNG 130 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISK 178 G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + +R+ + Sbjct: 131 LGQANSGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALSQREQAER 190 Query: 179 QLES 182 ++ + Sbjct: 191 RVRT 194 >gi|254521117|ref|ZP_05133172.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Stenotrophomonas sp. SKA14] gi|219718708|gb|EED37233.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Stenotrophomonas sp. SKA14] Length = 218 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F++F+ A +S+ V++VRNP+++V L+ F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVNIAFWVFAIAATVSAGAVISVRNPVHAVLCLVLTFFSIACVWLLVGAEFLGVALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL----AAELIVCASNFMVFS 116 VYVGAV+V FLF++MMLDID R + + LI + + Sbjct: 61 VYVGAVMVLFLFVVMMLDIDPTKLREGWVRYLPVGLIVAVAMLVQMLVLIGVKARSVTPF 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +NV + + L+T+Y P E + IL ++++ A++L LR R +K Q+ Sbjct: 121 PADNAAAVAADSSNVTWLARTLFTEYLLPFEFAAVILTVAVVAAVMLTLRRRTGVKSQNP 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + MVK+ + + Sbjct: 181 GEQTMVKAGQRLRMVKMGAEAPV 203 >gi|224109646|ref|XP_002333226.1| predicted protein [Populus trichocarpa] gi|224144011|ref|XP_002336100.1| predicted protein [Populus trichocarpa] gi|222835539|gb|EEE73974.1| predicted protein [Populus trichocarpa] gi|222872374|gb|EEF09505.1| predicted protein [Populus trichocarpa] Length = 201 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +V +NP++SV I F N +GL +LLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE---- 120 + V FLF++MM I I R S IG I E+ N + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTT 120 Query: 121 ------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + V N+E +G +LYT Y + ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 DI ++ + +I Sbjct: 181 DIFRRNAISFRRTI 194 >gi|319407258|emb|CBI80897.1| NADH dehydrogenase I chain J [Bartonella sp. 1-1C] Length = 206 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 86/190 (45%), Positives = 121/190 (63%), Gaps = 5/190 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 +IS+ +VV RNP++SV LI AF NAA LFLL GAEF+ +I LVVYVGA+ V FLF++ Sbjct: 17 MLISAVIVVAARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAIAVLFLFVV 76 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-----EGELSRLVFKGN 129 MMLD+D + R + FIGI+ A ++ FS + + + + Sbjct: 77 MMLDVDFAELKSGTLRYAPIAAFIGIIIAIELIFVFISDSFSPVSGVHTTQPTPDLTQRT 136 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 N + +G +LYT Y + +ISG ILL++MIGAIVL LRHR +KRQ I+ Q+ P+++I Sbjct: 137 NTQALGDILYTDYVFYFQISGLILLVAMIGAIVLTLRHRSGVKRQSIAVQVARTPESAIE 196 Query: 190 MVKVKSGKGI 199 + KV+SGKGI Sbjct: 197 IKKVESGKGI 206 >gi|302864910|ref|YP_003833547.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Micromonospora aurantiaca ATCC 27029] gi|315501195|ref|YP_004080082.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. L5] gi|302567769|gb|ADL43971.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora aurantiaca ATCC 27029] gi|315407814|gb|ADU05931.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. L5] Length = 256 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 95/197 (48%), Gaps = 2/197 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++ + +A++ + +V RN ++S L+ + ++L F+ M+ ++VY Sbjct: 17 EEVTFWILAPLALLGAIGMVWARNAVHSALWLVLTMLCLGVFYVLQAGPFIGMVQIIVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+++ FLF++M++ D + RG + + +G+ A L+ + + Sbjct: 77 GAIMMLFLFVLMLVGRDASDSLIETLRGQRVAAVVLGLGFAGLVGTGLYRALDGVQPVGL 136 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 NV+ I ++L+T+Y + E++ +L+ + +GA+VL RR R D +++ Sbjct: 137 DEANGEGNVQGIARLLFTKYVFAFELTSALLITAAVGAMVLAHVERRKADRMDQIATMKA 196 Query: 183 NPDNSIVMVKVKSGKGI 199 K G G+ Sbjct: 197 RF-RPGNYPGPKPGPGV 212 >gi|163850508|ref|YP_001638551.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium extorquens PA1] gi|218529205|ref|YP_002420021.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium chloromethanicum CM4] gi|240137573|ref|YP_002962044.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) [Methylobacterium extorquens AM1] gi|254560044|ref|YP_003067139.1| NADH-quinone oxidoreductase subunit J [Methylobacterium extorquens DM4] gi|163662113|gb|ABY29480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium extorquens PA1] gi|218521508|gb|ACK82093.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium chloromethanicum CM4] gi|240007541|gb|ACS38767.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) [Methylobacterium extorquens AM1] gi|254267322|emb|CAX23154.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) [Methylobacterium extorquens DM4] Length = 206 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FFYLF+ A+ S F+V+ RNP+ SV LI AFVNAAGLF+L+GAEF+AMI +V Sbjct: 1 MTAAAAFFYLFAGFAVASGFMVIAARNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D + ++ +G I EL++ + + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAALRQGFQRYLPIGGLIGAIFLIELVLVVGTWTIDPGLV 120 Query: 120 EL----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + N E +G+VLYT Y Y +I+G ILL++MIGAIVL LR R +KRQ+ Sbjct: 121 QAPLGRAAHGETATNTEALGRVLYTDYVYAFQIAGLILLVAMIGAIVLTLRERTGVKRQN 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q ++ +KV S +G+ Sbjct: 181 IAVQNARTQGMAVDTIKVPSRQGV 204 >gi|293603928|ref|ZP_06686343.1| NADH-quinone oxidoreductase subunit J [Achromobacter piechaudii ATCC 43553] gi|292817765|gb|EFF76831.1| NADH-quinone oxidoreductase subunit J [Achromobacter piechaudii ATCC 43553] Length = 218 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 69/195 (35%), Positives = 113/195 (57%), Gaps = 1/195 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + +I++F V+T R+P+ +V LI AF NAA L++LLGAEF+A++ ++ Sbjct: 1 MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFSNAAMLWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI ++ K IG++ + + A G Sbjct: 61 VYVGAVMVLFLFVVMMLDIRMDAMRQGLKTYLPLGLVIGLVLVLEMSFVLGSTWYGA-GP 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + NN +G+ +YTQY Y +E+ +LL+ M+ A+ L LR RRD+K D + Sbjct: 120 QAPVAGDYNNARALGEAMYTQYIYAVEVGAALLLVGMVAAVALTLRRRRDVKYNDPVAAV 179 Query: 181 ESNPDNSIVMVKVKS 195 + MVK+ + Sbjct: 180 RVRSKDRFRMVKMPA 194 >gi|289641418|ref|ZP_06473582.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia symbiont of Datisca glomerata] gi|289508754|gb|EFD29689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia symbiont of Datisca glomerata] Length = 277 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 2/173 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F++ + +A++++ +V RN ++ L+ A ++L A F+ + +VV Sbjct: 18 TGEAATFWVLAPVAVLAALGMVLARNAVHGALLLVTNLFCLAVFYMLQDAPFLGFVQIVV 77 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVC-ASNFMVFSAEG 119 Y GA++V FLF++M++ +D + RG + + +G+ A L+V + Sbjct: 78 YTGAIMVLFLFVLMLVGVDSSDSLVETLRGQRVAAIVLGVGFAGLLVFPIGGVIDNGTTA 137 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 G N++ I ++L+T Y + EI +L+++ +GA++L R R D K Sbjct: 138 AGLAAANDGGNIQAIARLLFTDYVFAFEIISALLIIAAVGAMILGHRERVDGK 190 >gi|182436768|ref|YP_001824487.1| NADH dehydrogenase subunit J [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777363|ref|ZP_08236628.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] gi|178465284|dbj|BAG19804.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657696|gb|EGE42542.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] Length = 288 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 97/194 (50%), Gaps = 7/194 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V ++ ++S SL + A +L GA F+ ++ +VVY Sbjct: 14 EAIQFWILGTVAVIGALSTVLLKRAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVYT 73 Query: 64 GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA+++ FLF++M++ + + E K + +L LI N + + EG Sbjct: 74 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALGCGLGFGILLIAGIGNASLSTFEGLG 133 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + G N+E + +++T+Y + EI+G +L+ + +GA+VL R R + R +++ Sbjct: 134 AANAAHGGNIEGLANLIFTKYVFAFEITGALLITATVGAMVLTHRERTE--RAKTQREMS 191 Query: 182 SNPDNSIVMVKVKS 195 + + + Sbjct: 192 ---EERVRGKHLPP 202 >gi|148259941|ref|YP_001234068.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Acidiphilium cryptum JF-5] gi|146401622|gb|ABQ30149.1| NADH dehydrogenase subunit J [Acidiphilium cryptum JF-5] Length = 216 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY+F+ + ++S+ +V+T RNP++SV LI AF+NA LF+L GAEF+AM+ ++VYVG Sbjct: 4 TLAFYVFAAILLLSACMVITARNPVHSVLFLILAFINAGALFVLAGAEFLAMVLVIVYVG 63 Query: 65 AVIVFFLFIIMMLDIDIEVA-EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 AV V FLF++MMLD+D E ++ LG IL E+ A + + A S+ Sbjct: 64 AVAVLFLFVVMMLDVDFAALREGFQRYAPLGLLIGFILMVEIGAVAIGWTITPAAHLASQ 123 Query: 124 LVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + +N +G ++YT+Y + E+ +LL++MIGAIVL R +RQDIS Q + Sbjct: 124 VPMPAHLSNTAALGDLIYTRYMFAFELVALLLLVAMIGAIVLTHSGERRSRRQDISMQHQ 183 Query: 182 SNPDNSIVMVKVKSGKG 198 D ++ MVK+ GKG Sbjct: 184 RPIDETLTMVKLGIGKG 200 >gi|225024113|ref|ZP_03713305.1| hypothetical protein EIKCOROL_00981 [Eikenella corrodens ATCC 23834] gi|224943138|gb|EEG24347.1| hypothetical protein EIKCOROL_00981 [Eikenella corrodens ATCC 23834] Length = 225 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 113/198 (57%), Gaps = 3/198 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FYL + + + + VTV+NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MNFQLILFYLLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MML+ID+E R + +G+L A +++ + +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDVEEMRKGFWRNAPVAAVVGVLMAVALIMILVAPATDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G+++ + +NV +G +YT Y P E++ +L+L M+ AI L+ R K + + Sbjct: 121 GQMNDVPADHSNVRELGTQIYTTYLLPFELAAVLLVLGMVAAIALVHRKTFKPKYINPAD 180 Query: 179 QLESNPDN-SIVMVKVKS 195 Q++ + + MVK+++ Sbjct: 181 QVKVDAKKGRLRMVKMEA 198 >gi|56791566|gb|AAW30321.1| NADH dehydrogenase subunit 6 [Philodendron hederaceum var. oxycardium] Length = 182 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 11/182 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +VV +NP++SV I F + +GL +LLG +F AMI VV++GA+ Sbjct: 1 VLSSPALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLILLGLDFSAMIFPVVHIGAIAAS 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124 FLF++MM +I I R S IG IL E+ N + + Sbjct: 61 FLFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120 Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ + Sbjct: 121 TVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFR 180 Query: 179 QL 180 + Sbjct: 181 RN 182 >gi|164420978|ref|YP_001648600.1| NADH dehydrogenase subunit 6 [Xestospongia muta] gi|158938983|gb|ABW83907.1| NADH dehydrogenase subunit 6 [Xestospongia muta] Length = 187 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 104/180 (57%), Gaps = 4/180 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+ IIS +V++ +P+YSV LI AFV+A+ LF+LL EF+A I L+VYVGA+ Sbjct: 4 LFYLFTLGVIISGIMVISALSPVYSVLWLIMAFVSASALFILLEVEFIAFIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IMML++ E F IG++ I N ++ L +V Sbjct: 64 AILFLFVIMMLNLTEETIGDDMSNYLPAGFIIGVVFLFEIFIFWNGTTDGSQMVLYWVV- 122 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI---KRQDISKQLESN 183 K N+E +G+VLYT Y Y ++ FILL++MIGAIVL +I KRQDI Q Sbjct: 123 KNTNIEVLGRVLYTDYYYLFIVASFILLVAMIGAIVLTHDTGTEIQDRKRQDIFVQTSRQ 182 >gi|294670449|ref|ZP_06735331.1| hypothetical protein NEIELOOT_02168 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307913|gb|EFE49156.1| hypothetical protein NEIELOOT_02168 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 225 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 3/198 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FYL + + + + VTV+NP+++ L+ F +A +++L+ AEF+ + +V Sbjct: 1 MNFQLILFYLLAAIILFGALKTVTVKNPVHAALYLVLTFCMSAMMWMLMQAEFLGITLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MML+ID+E R + +G+L A +++ + +A Sbjct: 61 VYVGAVMVLFLFVVMMLNIDVEEMRKGFWRNAPVAAVVGVLMAVALIMILVAPATDLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G+++ + +NV +G +YT Y P E++ +L+L M+ AI L+ R K + + Sbjct: 121 GQMNDVPADHSNVRELGTQIYTTYLLPFELAAVLLVLGMVAAIALVHRKTFKPKYINPAD 180 Query: 179 QLESNPDN-SIVMVKVKS 195 Q++ + + + MVK+++ Sbjct: 181 QVKVDANKGRLRMVKMEA 198 >gi|86739260|ref|YP_479660.1| NADH dehydrogenase subunit J [Frankia sp. CcI3] gi|86566122|gb|ABD09931.1| NADH dehydrogenase subunit J [Frankia sp. CcI3] Length = 267 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 3/199 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F++ S +A++++ +V VR+ ++S L+ A +L+ A F+ + ++V Sbjct: 17 TGEAATFWILSPVAVLAALGMVMVRSAVHSALLLVANLFCVAVFYLIQEAPFLGFVQIIV 76 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGE 120 Y GA++V FLF++M++ +D + RG LG+ G+ A L+ + + Sbjct: 77 YAGAIMVLFLFVLMLVGVDSSDSLVETIRGQRLGAIVFGLGFAGLLAFPIGSAIDGGSAK 136 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 G NV+ IG++L+T Y + E +L+++ IG +VL R R + ++ Sbjct: 137 GLSEANTGGNVQAIGRLLFTDYVFVFEAISALLVVAAIGTMVLGHREREGGRIS--QREW 194 Query: 181 ESNPDNSIVMVKVKSGKGI 199 V G G+ Sbjct: 195 MRRRFTEGRQVTPLPGPGV 213 >gi|285017801|ref|YP_003375512.1| NADH-quinone oxidoreductase chain j (nadh dehydrogenaseI chain j) (ndh-1, chain j) oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283473019|emb|CBA15524.1| probable nadh-quinone oxidoreductase chain j (nadh dehydrogenaseI chain j) (ndh-1, chain j) oxidoreductase protein [Xanthomonas albilineans] Length = 216 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 109/201 (54%), Gaps = 4/201 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F++F+ +A +++ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVNIAFWIFATIAAVAAGAVISVRNPVYAVLCLILTFFSIACVWLLVGAEFLGVTLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA----ELIVCASNFMVFS 116 VYVGAV+V FLF++MMLDID R + + LI + + Sbjct: 61 VYVGAVMVLFLFVVMMLDIDSVRLREGWVRYLPVGLAVALAMLVQMVTLIGVKARTVAPF 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K L+TQ+ P E + IL ++++ A++L LR R IK Q+ Sbjct: 121 PADNAAAQAADTSNIAWLAKTLFTQFLLPFEFAAIILTVAVVAAVMLTLRKRTGIKTQNP 180 Query: 177 SKQLESNPDNSIVMVKVKSGK 197 +Q + + MVK+ + K Sbjct: 181 GEQSRVKAGDRLRMVKMDAEK 201 >gi|162279922|ref|NP_064048.2| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris] gi|323435072|ref|YP_004222290.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima] gi|87248042|gb|ABD36075.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris] gi|148491425|dbj|BAA99358.2| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris] gi|317905725|emb|CBJ14110.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima] gi|319439805|emb|CBJ17517.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima] Length = 205 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA Sbjct: 1 MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|311104667|ref|YP_003977520.1| NADH-quinone oxidoreductase subunit J [Achromobacter xylosoxidans A8] gi|310759356|gb|ADP14805.1| NADH-quinone oxidoreductase subunit J [Achromobacter xylosoxidans A8] Length = 216 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 68/195 (34%), Positives = 112/195 (57%), Gaps = 1/195 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + +I++F V+T R+P+ +V LI AF NAA L++LLGAEF+A++ ++ Sbjct: 1 MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFSNAAMLWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI ++ K IG++ + + A G Sbjct: 61 VYVGAVMVLFLFVVMMLDIRMDALRQGMKTYLPLGLIIGLVMVLEMAFVLGSTWYGA-GP 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + NN +G+ +YTQY Y +E+ +LL+ M+ AI L LR RRD+K D + Sbjct: 120 QAPVAGDYNNARALGEAMYTQYVYAIEVGAALLLVGMVAAIALTLRRRRDVKYNDPVAAV 179 Query: 181 ESNPDNSIVMVKVKS 195 + +V + + Sbjct: 180 RVRAKDRFRLVSMPA 194 >gi|307101736|ref|YP_003875484.1| NADH dehydrogenase subunit 6 [Silene latifolia] gi|301338031|gb|ADK73323.1| NADH dehydrogenase subunit 6 [Silene latifolia] Length = 205 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA Sbjct: 1 MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|317134340|ref|YP_004123126.1| NADH dehydrogenase subunit 6 [Oscarella microlobata] gi|308912655|gb|ADO51418.1| NADH dehydrogenase subunit 6 [Oscarella microlobata] Length = 197 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY+F+ IIS +V++ NPI+SVF LI F+ A+ LF+LLG +F+A+I L+VYVG + Sbjct: 4 LFYMFALGVIISGIMVISALNPIHSVFWLIVVFLGASALFILLGIDFIALIFLIVYVGXI 63 Query: 67 IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-------- 117 + FLF+IMML++ D+E +GS +L E+++ +S Sbjct: 64 AILFLFVIMMLNLTDLEGGGDMSNYIPIGSVIGVLLLFEVLIMGREATAYSYRDIDHECL 123 Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + S + K +N+E +G+VLYT Y Y I+ FILL++MIGAIVL ++K Sbjct: 124 KGGVDAWDTSIEIIKSSNIEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHELGAELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q + Sbjct: 184 RQDLFIQTSRS 194 >gi|83416415|gb|ABC18241.1| NADH dehydrogenase subunit 6 [Brassica oleracea var. botrytis] Length = 201 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + +GL LLLG +F AMI LVVY+GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|110816045|ref|YP_684376.1| NADH dehydrogenase subunit 6 [Oltmannsiellopsis viridis] gi|86450256|gb|ABC96335.1| NADH dehydrogenase subunit 6 [Oltmannsiellopsis viridis] Length = 207 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 17/204 (8%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FYLFS +A+IS+ V +NP++SV LI F NA+GL +L+G +F+A+I ++VYVG Sbjct: 2 NFLFYLFSSLALISAVFVTQAKNPVHSVLFLILVFFNASGLLILMGLDFIALILMIVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG----- 119 A+ FLF++M+LDI E ++ R +G+L I + Sbjct: 62 AITTLFLFVVMLLDIKTEEVSEKRLRYLPIGGLLGVLFLVQIFVVIENSLVPHWVHVPFT 121 Query: 120 ------------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + L N+E +G+VLYT Y+ ++ F+LL++MIG+IVL + Sbjct: 122 NNPVILDHLQYLKWNTLTDNYTNIEALGQVLYTVYSLHFILASFVLLVAMIGSIVLTMVK 181 Query: 168 RRDIKRQDISKQLESNPDNSIVMV 191 +KRQ++S+Q + +I V Sbjct: 182 GAYVKRQEVSEQNYRDFSQTIAHV 205 >gi|327195240|ref|YP_004339022.1| NADH dehydrogenase subunit 6 [Coccomyxa sp. C-169] gi|325070736|gb|ADY75464.1| NADH dehydrogenase subunit 6 [Coccomyxa sp. C-169] Length = 205 Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 16/198 (8%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY FS +A+IS +V+ RNP++SV LI F N+AGL +LLG EF AMI LVVYVGA+ Sbjct: 4 LFYFFSSLALISGVMVIQARNPVHSVLFLILVFFNSAGLLVLLGLEFFAMIFLVVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE------ 120 V FLF++MML+I + ++ R +G+L I + + G Sbjct: 64 AVLFLFVVMMLNIKLAEISEKRLRYLPIGGLLGMLFLGEIFLIVDNDLIPWLGSAHLSEW 123 Query: 121 ----------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S L +E +G ++YT Y Y ++ ILL++MIGAIVL L Sbjct: 124 AELSAMEWTPWSHLAEGVTPLEGVGVIIYTYYFYFFLLASLILLVAMIGAIVLTLHKGVA 183 Query: 171 IKRQDISKQLESNPDNSI 188 +K Q++ Q ++ Sbjct: 184 VKHQEVFHQNSREFAKTV 201 >gi|54606785|dbj|BAD66808.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. vulgaris] Length = 205 Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F N +GL LLLG +F AMI VVY+GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDSRRTI 194 >gi|240850592|ref|YP_002971992.1| NADH dehydrogenase I subunit J [Bartonella grahamii as4aup] gi|240267715|gb|ACS51303.1| NADH dehydrogenase I subunit J [Bartonella grahamii as4aup] Length = 206 Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 81/190 (42%), Positives = 124/190 (65%), Gaps = 5/190 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + + S+ +V+T RNP++SV LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF+ Sbjct: 16 IMLTSAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFV 75 Query: 74 IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRLVFKG 128 +MMLD+D E+ + +G+ I+A ELIV + ++ + + + + Sbjct: 76 VMMLDVDFAELKSGTLRYAPIGALIGVIIAVELIVVFVSSYFSPVLRTHVTQPMPDLTQR 135 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188 N + +G +LYT Y + +I+G ILL++MIGAIVL LRH+ +KRQ I++Q+ +++I Sbjct: 136 TNTQALGDILYTDYVFYFQIAGMILLVAMIGAIVLTLRHKLGVKRQSIAEQVSRTVESAI 195 Query: 189 VMVKVKSGKG 198 + +V+SGKG Sbjct: 196 EIKQVESGKG 205 >gi|124286766|ref|YP_001023660.1| NADH dehydrogenase subunit 6 [Savalia savaglia] gi|110083985|gb|ABG49162.1| NADH dehydrogenase subunit 6 [Savalia savaglia] Length = 221 Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 36/221 (16%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY SF AI S +V++ NP++SVF L+ AF +++ LF+LLGA+F+A++ L+VY Sbjct: 1 MTWACFYTLSFGAIASGIMVISALNPVHSVFWLVVAFTSSSALFILLGADFIALMFLIVY 60 Query: 63 VGAVIVFFLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 VGA+ + FLF+IMML++ + ++ +G+ F +A+ ++ + Sbjct: 61 VGAIAILFLFVIMMLNLTDFPPAYRLGGETDMTNYVPVGLAIGTLFFSEIASSWLIMGGH 120 Query: 112 FMVFSAEGELS---------------------RLVFKGNNVENIGKVLYTQYAYPLEISG 150 + G + + K +N+E IG++LYT Y Y ++ Sbjct: 121 SALAGPFGAATSGHASALRPLELGGNWNLANPWFLIKCHNIEAIGRLLYTDYYYLFILAS 180 Query: 151 FILLLSMIGAIVLMLRHRRDI----KRQDISKQLESNPDNS 187 FILL++MIGAIVL +I K+QDI Q+ P+ + Sbjct: 181 FILLVAMIGAIVLTQEIGEEIGATAKKQDIFLQISRAPEGA 221 >gi|49475649|ref|YP_033690.1| NADH dehydrogenase subunit J [Bartonella henselae str. Houston-1] gi|49238456|emb|CAF27684.1| NADH dehydrogenase I, J subunit [Bartonella henselae str. Houston-1] Length = 206 Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 123/191 (64%), Gaps = 5/191 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + + S+ +V+T RNP++SV LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF+ Sbjct: 16 IMLASAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFV 75 Query: 74 IMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRLVFKG 128 +MMLD+D E+ + +G+ I+A ELIV ++ + + + + Sbjct: 76 VMMLDVDFAELKSGTLRYAPIGALVGSIVAVELIVVFVGSRFSPVLRAHVMQPMPDLAQK 135 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188 N + +G +LYT Y + +I+G ILL++MIGAI+L LRH+ +KRQ I+ Q+ +N+I Sbjct: 136 TNTQALGDILYTDYVFYFQIAGIILLVAMIGAIILTLRHKSGVKRQSIAVQVSRKVENAI 195 Query: 189 VMVKVKSGKGI 199 + +++SGKGI Sbjct: 196 EIKQIESGKGI 206 >gi|170748468|ref|YP_001754728.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium radiotolerans JCM 2831] gi|170654990|gb|ACB24045.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium radiotolerans JCM 2831] Length = 206 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 126/204 (61%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FFYLF+ + + S F+V+ RNP+ SV LI AFVNAAGLF+L+GAEF+AMI +V Sbjct: 1 MTAAAAFFYLFASITVASGFMVIASRNPVASVLFLILAFVNAAGLFVLMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D E+ + ++ +G+ I EL++ ++ + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELRQGFQQYLPIGALIGAIFLVELLLVVGSWSIDPGLV 120 Query: 120 ELS----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + N + +G+V+YT YAY +++G ILL++MIGAIVL LR R +KRQ Sbjct: 121 QAPLGNVAAAENLTNAQALGRVIYTDYAYFFQLAGLILLVAMIGAIVLTLRDRPGVKRQS 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q ++ KV S +G+ Sbjct: 181 IAVQNARTQAMAVETRKVPSRQGV 204 >gi|296283849|ref|ZP_06861847.1| NADH dehydrogenase I, J subunit [Citromicrobium bathyomarinum JL354] Length = 206 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 80/203 (39%), Positives = 117/203 (57%), Gaps = 6/203 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++ FYLF+ M I S L + RNP++SV LI AF NAAGL +LLGAEF+AM+ +VVY Sbjct: 2 IQAIAFYLFATMVIASGVLTIMSRNPVHSVLWLILAFFNAAGLMVLLGAEFIAMLLVVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-----GILAAELIVCASNFMVFSA 117 VGAV V FLF++MMLD+D+ + F I L + + + Sbjct: 62 VGAVAVLFLFVVMMLDVDMAELRAGFIKNFPLGIAIALVLLAELVLGIGALGAGPLELGT 121 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDI 176 + +N+ENIG +LY++Y + E +G ILL++MIGAIVL R + Q+I Sbjct: 122 ASGANAPNLANSNIENIGALLYSKYIFVFEAAGLILLVAMIGAIVLTHRDLKTTRGHQNI 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +KQ+ NP + M + G+G+ Sbjct: 182 TKQVRRNPKEATQMKQPTVGEGV 204 >gi|49474186|ref|YP_032228.1| NADH dehydrogenase subunit J [Bartonella quintana str. Toulouse] gi|49239690|emb|CAF26065.1| NADH dehydrogenase I, J subunit [Bartonella quintana str. Toulouse] Length = 206 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 80/191 (41%), Positives = 118/191 (61%), Gaps = 5/191 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + + S+ +V+T RNP++SV LI AF NAA LFLL GAEF+ +I L+VYVGAV V FLF+ Sbjct: 16 IMLASAVIVITARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLIVYVGAVAVLFLFV 75 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-----EGELSRLVFKG 128 IMMLD+D + R FIG++ A ++ FS + + + Sbjct: 76 IMMLDVDFAELKSGALRYAPIGAFIGVVVAVELIFVFVSSHFSPVVRTHVTQPMPNLAQR 135 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188 N + +G +LYT Y + +++G ILL++MIGAIVL LRH+ ++RQ I+ Q+ N+I Sbjct: 136 TNTQALGDILYTDYVFYFQVAGIILLVAMIGAIVLTLRHKSGVRRQSIAVQVSRTVANAI 195 Query: 189 VMVKVKSGKGI 199 + +V+SGKGI Sbjct: 196 EIKQVESGKGI 206 >gi|317401997|gb|EFV82597.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54] Length = 216 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 68/195 (34%), Positives = 111/195 (56%), Gaps = 1/195 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ + + +I++F V+T R+P+ +V LI AF NAA L++LLGAEF+A++ ++ Sbjct: 1 MTFTTVLFYILAAVLVIAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI ++ K IG++ + + A G Sbjct: 61 VYVGAVMVLFLFVVMMLDIRMDALRQGMKTYLPLGLVIGLVMVLEMAFVLGSTWYGA-GP 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + NN +G+ +YT Y Y +E+ +LL+ M+ AI L LR RRD+K D + Sbjct: 120 QAPVAGDYNNARALGEAMYTHYIYAIEVGAALLLVGMVAAIALTLRRRRDVKYNDPVAAV 179 Query: 181 ESNPDNSIVMVKVKS 195 + MV + + Sbjct: 180 RVRSKDRFRMVSMPA 194 >gi|33592016|ref|NP_879660.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis Tohama I] gi|33597902|ref|NP_885545.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella parapertussis 12822] gi|33602807|ref|NP_890367.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella bronchiseptica RB50] gi|33571660|emb|CAE41153.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis Tohama I] gi|33574331|emb|CAE38667.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella parapertussis] gi|33577249|emb|CAE35806.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella bronchiseptica RB50] gi|332381432|gb|AEE66279.1| NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis CS] Length = 215 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 114/195 (58%), Gaps = 1/195 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+ +F+ +I++F V+T R+P+ +V LI AF NAA +++LLGAEF+A++ ++ Sbjct: 1 MTFTTVLFYILAFVLVIAAFRVITARSPVTAVLHLILAFANAAMIWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI I+ K IG++ + + A G Sbjct: 61 VYVGAVMVLFLFVVMMLDIRIDSLRDGLKTYLPLGLVIGVVLVLEMAFVLGSTWYGA-GP 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + NN +G+V+YTQY Y +E+ +LL+ M+ AI L LR RRD K D + Sbjct: 120 QAPVAGDYNNARALGEVMYTQYVYAIEVGAALLLVGMVAAIALTLRRRRDAKYNDPVAAV 179 Query: 181 ESNPDNSIVMVKVKS 195 + MVK+ + Sbjct: 180 RVRAKDRFRMVKMTA 194 >gi|258651225|ref|YP_003200381.1| NADH dehydrogenase subunit J [Nakamurella multipartita DSM 44233] gi|258554450|gb|ACV77392.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nakamurella multipartita DSM 44233] Length = 293 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 95/199 (47%), Gaps = 6/199 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++ + +A++ + +V ++ ++S L+ ++ L++ AEF+ + ++VY Sbjct: 26 ELIAFWILAPLAVLGAIGMVFSKSAVHSALWLVLTMLSLGCLYINQNAEFLGFVQIIVYT 85 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG-EL 121 GA+++ FLF++M+ D + R + + +GI L+V + + L Sbjct: 86 GAIMMLFLFVLMLTGRDSGDSTFEVLRKQRIVAIVLGIGFVVLLVTGLLRALKAVPAVGL 145 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 S + I ++L+T Y +P E++ +L+ + GA+VL + +R+ +++ Sbjct: 146 SGAYADRGPLGAIAELLFTDYLFPFELTSALLITAATGAMVLTHIEKAPGERKSQGQRVR 205 Query: 182 SN-PDNSIVMVKVKSGKGI 199 + + G G+ Sbjct: 206 ERMRSDRM---SPLPGPGV 221 >gi|317134245|ref|YP_004123489.1| NADH dehydrogenase subunit 6 [Halisarca sp. DVL-2010] gi|315141536|gb|ADT81740.1| NADH dehydrogenase subunit 6 [Halisarca sp. DVL-2010] Length = 191 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 71/184 (38%), Positives = 98/184 (53%), Gaps = 7/184 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+ I S +V++ NP++SV LIFAF NA+ LF+LL EF+A I L+VYVGA+ Sbjct: 4 LFYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEV--AEPRKKRGFLGSFFIGILAAELIVCASN-----FMVFSAEG 119 + FLF+IMML++ IG + I+ N ++ Sbjct: 64 AILFLFVIMMLNLTDFGYNINSDMSNYLPAGLVIGTVFLFEILIWHNHSEGYYLSSDCVP 123 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E IG+VLYT + Y ++ FILL++MIGAIVL DI+RQDI Q Sbjct: 124 IYYNCVISSPNIEIIGRVLYTDFYYLFLLASFILLVAMIGAIVLTHEINIDIRRQDIFIQ 183 Query: 180 LESN 183 Sbjct: 184 TSRQ 187 >gi|297192778|ref|ZP_06910176.1| NADH dehydrogenase subunit J [Streptomyces pristinaespiralis ATCC 25486] gi|197721033|gb|EDY64941.1| NADH dehydrogenase subunit J [Streptomyces pristinaespiralis ATCC 25486] Length = 279 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 93/185 (50%), Gaps = 4/185 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + + ++ ++S L + A +L GA F+ ++ +VV Sbjct: 11 TGEAVQFWVLGTIAVIGALCTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVV 70 Query: 62 YVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ + + E K + +L + LI N + + G Sbjct: 71 YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGILLIAGIGNASLKNFNG 130 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R ++ Sbjct: 131 LGAANSAHGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RAKTQRE 188 Query: 180 LESNP 184 L Sbjct: 189 LSEQR 193 >gi|239943485|ref|ZP_04695422.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998] gi|239989939|ref|ZP_04710603.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 11379] gi|291446956|ref|ZP_06586346.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998] gi|291349903|gb|EFE76807.1| NADH dehydrogenase subunit J [Streptomyces roseosporus NRRL 15998] Length = 289 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 91/172 (52%), Gaps = 2/172 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + V ++ ++S SL + A +L GA F+ ++ ++VY Sbjct: 14 EAIQFWILGTVAVIGALSTVLMKKAVHSALSLAGTMIILAVFYLANGAYFLGIVQIIVYT 73 Query: 64 GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA+++ FLF++M++ + + E K + +L + LI N + + G Sbjct: 74 GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAGCSLGFGILLIAGIGNASLSTFNGLG 133 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R Sbjct: 134 AANAQHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMVLTHRERTERAR 185 >gi|112253907|ref|YP_717162.1| NADH dehydrogenase subunit 6 [Brassica napus] gi|37591109|dbj|BAC98911.1| NADH dehydrogenase subunit 6 [Brassica napus] Length = 205 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S +A++S +VV +NP++SV I F + +GL LLLG +F AMI LVVY+GA Sbjct: 1 MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|320148706|emb|CBJ23344.1| NADH dehydrogenase subunit 6 [Beta vulgaris subsp. maritima] Length = 205 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA Sbjct: 1 MILSVLSSLALVSGLMVVRAQNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|302553435|ref|ZP_07305777.1| NADH dehydrogenase subunit J [Streptomyces viridochromogenes DSM 40736] gi|302471053|gb|EFL34146.1| NADH dehydrogenase subunit J [Streptomyces viridochromogenes DSM 40736] Length = 280 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 92/198 (46%), Gaps = 2/198 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + + ++ ++S L + A +L GA F+ ++ ++V Sbjct: 12 TGEAVQFWILGTVAVIGALGTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVVQIIV 71 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L +++ A E Sbjct: 72 YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGILLFAGIGNASLKEFNG 131 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G NV+ I +L+T+Y + EI+G +L+ + +GA+VL R R + R ++L Sbjct: 132 IGQANAGGNVQGIAALLFTRYVFAFEITGALLITAAVGAMVLTHRERTE--RAKTQRELA 189 Query: 182 SNPDNSIVMVKVKSGKGI 199 + G+ Sbjct: 190 EERVREGKYMPPLPAPGV 207 >gi|261599936|dbj|BAI45219.1| NADH dehydrogenase [Dianthus japonicus] Length = 205 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDSRRTI 194 >gi|256785932|ref|ZP_05524363.1| NADH dehydrogenase subunit J [Streptomyces lividans TK24] gi|289769825|ref|ZP_06529203.1| NuoJ [Streptomyces lividans TK24] gi|289700024|gb|EFD67453.1| NuoJ [Streptomyces lividans TK24] Length = 285 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 93/184 (50%), Gaps = 2/184 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + V ++ ++S L + A +L GA F+ ++ +VV Sbjct: 17 TGEAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 76 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L +++ A +E Sbjct: 77 YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGILLIAGIGNASVSEFTG 136 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDISKQ 179 NVE I +++T+Y + EI+G +L+ + +GA+VL R R + R +++S+Q Sbjct: 137 LAQANANGNVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQRELSEQ 196 Query: 180 LESN 183 + Sbjct: 197 RIRD 200 >gi|187477550|ref|YP_785574.1| NADH dehydrogenase I subunit J [Bordetella avium 197N] gi|115422136|emb|CAJ48660.1| NADH dehydrogenase I chain J [Bordetella avium 197N] Length = 210 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 74/198 (37%), Positives = 121/198 (61%), Gaps = 7/198 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M S+ FYL +F+ ++++F V+T R+P+ +V LI AF NAA L++LLGAEF+A++ ++ Sbjct: 1 MTFTSVLFYLLAFVLVVAAFRVITARSPVTAVLHLILAFANAAMLWMLLGAEFLALLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI I+ + G +G++ ++V F++F+ G+ Sbjct: 61 VYVGAVMVLFLFVVMMLDIRID----HLRHGLKTYLPLGLIIGGIMVVEMGFVLFTTWGD 116 Query: 121 LSRLVF---KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 V NN +G+ +YTQY + +E+ +LL+ M+ AI L LR RRD K D + Sbjct: 117 AGPQVVMAGDYNNARALGEAMYTQYVFGVEVGAALLLVGMVAAIALTLRRRRDAKYNDPA 176 Query: 178 KQLESNPDNSIVMVKVKS 195 + + MVK+++ Sbjct: 177 AAVRVRAKDRFRMVKMQA 194 >gi|332968225|gb|EGK07302.1| NADH-quinone oxidoreductase subunit J [Kingella kingae ATCC 23330] Length = 215 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 3/198 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+F+ + + + VT +NP+++ L+ F +A ++LL+ AEF+ + +V Sbjct: 1 MTFSLVLFYMFAAIILYGALQTVTAKNPVHATLHLVLTFCVSAMMWLLMQAEFLGITLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118 VYVGAV+V FLF++MML+ID E R + +G+L A ++ V + + Sbjct: 61 VYVGAVMVLFLFVVMMLNIDAEEMRKGFWRHAPAALTVGVLMAAVLIAVLVAPDTALNQF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + +NV ++GK LYT Y + E++ +L+L M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYSNVRDLGKQLYTTYVWQFELAAVLLVLGMVAAIALVHRKSTNPKRIDPAD 180 Query: 179 QLESNPDN-SIVMVKVKS 195 Q++ N + MVK++S Sbjct: 181 QVKVNAAEGRMRMVKMES 198 >gi|302559098|ref|ZP_07311440.1| NADH dehydrogenase I, J subunit [Streptomyces griseoflavus Tu4000] gi|302476716|gb|EFL39809.1| NADH dehydrogenase I, J subunit [Streptomyces griseoflavus Tu4000] Length = 280 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 91/198 (45%), Gaps = 2/198 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F++ +A+I + V +R ++S L + A +L GA F+ ++ +VV Sbjct: 12 TGEAFQFWVLGTVAVIGALCTVFMRRAVHSALCLAGTMIVLAVFYLANGAYFLGVVQIVV 71 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L +++ +E Sbjct: 72 YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGVLLVGGIGNASLSEFNG 131 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G NVE + +L+T+Y + EI+G +L+ + +GA+VL R R + R ++L Sbjct: 132 LGEANAGGNVEGLAALLFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RARTQRELA 189 Query: 182 SNPDNSIVMVKVKSGKGI 199 + G+ Sbjct: 190 EQRVREGKYLPPLPAPGV 207 >gi|320009195|gb|ADW04045.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces flavogriseus ATCC 33331] Length = 284 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 97/194 (50%), Gaps = 4/194 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A++ + V ++ ++S SL + A +L GA F+ ++ +VVY Sbjct: 16 EAVQFWILGTVAVVGALSTVLMKKAVHSALSLAGTMIVLAVFYLANGAYFLGIVQVVVYT 75 Query: 64 GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA+++ FLF++M++ + + E K + +L + LI + S G Sbjct: 76 GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGILLIAGIGQASLQSFNGLG 135 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + G NVE + +++T+Y + EI+G +L+ + +GA++L R R + R ++L Sbjct: 136 AANAQHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMLLTHRERTE--RAKTQRELS 193 Query: 182 SNPDNSIVMVKVKS 195 S + + + Sbjct: 194 QERVRSSHLPPLPA 207 >gi|44889032|sp|P60497|NU6M_ARATH RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 Length = 205 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S +A++S +VV +NP++SV I F + +GL LLLG +F AMI LVVY+GA Sbjct: 1 MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|239929605|ref|ZP_04686558.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672] gi|291437929|ref|ZP_06577319.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672] gi|291340824|gb|EFE67780.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672] Length = 283 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 89/198 (44%), Gaps = 2/198 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + V +R ++S L + A +L GA F+ ++ +VV Sbjct: 12 TGEAVQFWVLGTIAVIGALCTVFMRRAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 71 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L ++ E Sbjct: 72 YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGTLLITGIGHASLGEFNG 131 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NVE I +++T+Y + EI+G +L+ + +GA+VL R R + R ++L Sbjct: 132 IGQANANGNVEGIASLIFTRYVFAFEITGILLITAAVGAMVLTHRERTE--RARTQRELA 189 Query: 182 SNPDNSIVMVKVKSGKGI 199 + G+ Sbjct: 190 EQRVREGKYLPPLPAPGV 207 >gi|319404250|emb|CBI77843.1| NADH dehydrogenase I chain J [Bartonella rochalimae ATCC BAA-1498] Length = 206 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 90/190 (47%), Positives = 124/190 (65%), Gaps = 5/190 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 +IS+ +VV RNP++SV LI AF NAA LFLL GAEF+ +I LVVYVGAV V FLF++ Sbjct: 17 MLISAVIVVVARNPVHSVLFLILAFFNAAALFLLAGAEFLGLILLVVYVGAVAVLFLFVV 76 Query: 75 MMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG----ELSRLVFKGN 129 MMLD+D E+ K +G+F I+A ELI + F G + + + + Sbjct: 77 MMLDVDFAELKSGTLKYAPIGAFIGIIIAIELIFVFISNSFFPVSGVHATQPTPDLTQRT 136 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIV 189 N + +G +LYT Y + +ISG ILL++MIGAIVL LRHR +KRQ I+ Q+ P+++I Sbjct: 137 NTQALGDILYTDYVFYFQISGLILLVAMIGAIVLTLRHRSGVKRQSIAVQVARTPESAIE 196 Query: 190 MVKVKSGKGI 199 + KV+SGKGI Sbjct: 197 IKKVESGKGI 206 >gi|290958251|ref|YP_003489433.1| NADH dehydrogenase subunit NuoJ [Streptomyces scabiei 87.22] gi|260647777|emb|CBG70882.1| NuoJ, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length = 283 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 86/183 (46%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F++ +A+I + V ++ ++S L V A +L GA F+ ++ +VV Sbjct: 17 TGEAFQFWVLGTVAVIGALCTVFMKRAVHSALCLAGTMVILAVFYLANGAYFLGIVQIVV 76 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + +++ A E Sbjct: 77 YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGAGFGILLIAGIGNASLTEFSG 136 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G NVE + +++T Y + E++G +L+ + +GA+VL R R + R ++L Sbjct: 137 LGTANAGGNVEGLAALIFTDYVFAFELTGALLITAAVGAMVLTHRERTE--RPKTQRELA 194 Query: 182 SNP 184 Sbjct: 195 EQR 197 >gi|21222954|ref|NP_628733.1| NADH dehydrogenase subunit J [Streptomyces coelicolor A3(2)] gi|5042268|emb|CAB44522.1| NuoJ, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] Length = 285 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 93/184 (50%), Gaps = 2/184 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + V ++ ++S L + A +L GA F+ ++ +VV Sbjct: 17 TGEAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 76 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L +++ A +E Sbjct: 77 YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGILLIAGIGNASVSEFTG 136 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDISKQ 179 NVE I +++T+Y + EI+G +L+ + +GA+VL R R + R +++S+Q Sbjct: 137 LAQANANGNVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQRELSEQ 196 Query: 180 LESN 183 + Sbjct: 197 RIRD 200 >gi|164420948|ref|YP_001648461.1| NADH dehydrogenase subunit 6 [Amphimedon compressa] gi|158668072|gb|ABW76536.1| NADH dehydrogenase subunit 6 [Amphimedon compressa] Length = 184 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 4/178 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+ A IS +V++ + ++SV LI F++A+ LF+LL EF+A I L+VYVGA+ Sbjct: 4 LFYLFALGATISGIMVISAFSSVHSVLWLIMVFISASALFILLEVEFIAFIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IMML++ IGI+ + A +F + G LV Sbjct: 64 AILFLFVIMMLNLTGPGMGDDMSNYLPAGLIIGIVF---LFEALSFRSTTLGGNWPLLVE 120 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQLESN 183 K N+E +G+VLYT Y Y I+ FILL++MIGAIVL K QDI Q+ Sbjct: 121 KAPNIEVLGRVLYTDYYYLFIIASFILLVAMIGAIVLTHDEGIEKRKGQDIYIQISRQ 178 >gi|114321110|ref|YP_742793.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Alkalilimnicola ehrlichii MLHE-1] gi|114227504|gb|ABI57303.1| NADH dehydrogenase subunit J [Alkalilimnicola ehrlichii MLHE-1] Length = 198 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 119/195 (61%), Gaps = 1/195 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+F+ + + ++ +V+T RNP++ L+ AF N+A L+++ GAEF+ + +VVY Sbjct: 1 MEQVIFYVFAAVLLFAATMVITARNPVHCALFLVLAFFNSAILWVMAGAEFLGIALVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL-AAELIVCASNFMVFSAEGEL 121 VGAV+V FLF++MMLDI V + R + +L A +L + + A G + Sbjct: 61 VGAVMVLFLFVVMMLDIGRSVHQEGFTRYLPAGALVAVLMAVQLGLVLVSDHTGIAGGVI 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + +N+ +G +LYT Y YP EI+G ILL+++I AIVL LR R K QD++KQ+ Sbjct: 121 PEVPADVDNIRGLGGLLYTTYVYPFEIAGAILLVAIIAAIVLTLRRREGTKHQDVAKQVR 180 Query: 182 SNPDNSIVMVKVKSG 196 ++ + +V +KS Sbjct: 181 VRREDRVRLVSMKSE 195 >gi|330465211|ref|YP_004402954.1| NADH:ubiquinone oxidoreductase subunit J [Verrucosispora maris AB-18-032] gi|328808182|gb|AEB42354.1| NADH:ubiquinone oxidoreductase subunit J [Verrucosispora maris AB-18-032] Length = 256 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 97/197 (49%), Gaps = 2/197 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +A+ + ++ RN ++S L+ ++ ++L F+ M+ ++VY Sbjct: 17 EAVTFWILAPLALAGAIGMIAARNAVHSALWLVLTMLSLGVFYVLQAGPFIGMVQIIVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+++ FLF++M++ D + RG + + +G+ A L+ + E Sbjct: 77 GAIMMLFLFVLMLVGRDASDSLIEVLRGQRIAAIGLGVGFAALLGSGAYRATQGTEAVGL 136 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 G NV++I ++L+T Y + E++ +L+ + IG ++L RR R+D +++ Sbjct: 137 EQANAGGNVQSIARLLFTDYIFAFELTAALLITATIGGMILAHVERRKEDRRDQVATMKA 196 Query: 183 NPDNSIVMVKVKSGKGI 199 K G G+ Sbjct: 197 RFAPG-NYPGPKPGPGV 212 >gi|121602205|ref|YP_989079.1| NADH dehydrogenase subunit J [Bartonella bacilliformis KC583] gi|120614382|gb|ABM44983.1| NADH dehydrogenase (quinone), J subunit [Bartonella bacilliformis KC583] Length = 206 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 85/202 (42%), Positives = 128/202 (63%), Gaps = 5/202 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FFYLFSF+ ++S+ +V+ RNP++SV LI AF NAA LFLL GAEF+ ++ LVVY Sbjct: 5 LAAAFFYLFSFIMLMSAIIVIAARNPVHSVLFLILAFFNAAALFLLAGAEFLGLLLLVVY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA-----SNFMVFSA 117 VGAV V FLF++MMLD+D + + +GI+ A ++ + ++ + Sbjct: 65 VGAVAVLFLFVVMMLDVDFAELKRNAFQYVPVGALVGIIIAVELIIVFFSNDFSLILGTH 124 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + N + +G +LYT Y + +I+G ILL++MIGAIVL LRH+ +KRQ I Sbjct: 125 TTQPMPSLEHRTNTQALGDILYTDYVFYFQIAGMILLVAMIGAIVLTLRHKAGVKRQSIG 184 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 Q+ NP+ +I + KV+SGKGI Sbjct: 185 IQVARNPETAIEIKKVESGKGI 206 >gi|194033221|ref|YP_002000558.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|60498739|dbj|BAC19862.2| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] Length = 205 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + AGL +LLG +F AMI LV+Y+GA Sbjct: 1 MILSVLSSFALVSGLMVVRAKNPVHSVLFFILIFCDTAGLLILLGLDFFAMIFLVIYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM +I I R S IG I E+ N + + Sbjct: 61 IAVLFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N++ +G +LYT Y +S ILL++MIGAIVL + ++RQ Sbjct: 121 SLRYTVYAGKVRNWTNLDTLGNLLYTYYFVWFLVSTLILLVAMIGAIVLTMHRTTKVQRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNALDFRRTI 194 >gi|164420992|ref|YP_001648613.1| NADH dehydrogenase subunit 6 [Halisarca dujardini] gi|158668146|gb|ABW76605.1| NADH dehydrogenase subunit 6 [Halisarca dujardini] Length = 196 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 71/189 (37%), Positives = 99/189 (52%), Gaps = 12/189 (6%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+ I S +V++ NP++SV LIFAF NA+ LF+LL EF+A I L+VYVGA+ Sbjct: 4 LFYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDID-------IEVAEPRKKRGFLGSFFIGILAAELIVCASN-----FMV 114 + FLF+IMML++ A IGI+ I+ N ++ Sbjct: 64 AILFLFVIMMLNLTPNTGGEFGPNANSDMSNYLPAGLVIGIVFLFEILIWHNHSEGYYLS 123 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E IG+VLYT + Y ++ FILL++MIGAIVL +I+ Q Sbjct: 124 SGCVPVYYNCVISSPNIEIIGRVLYTDFYYLFLLASFILLVAMIGAIVLTHDINTEIRXQ 183 Query: 175 DISKQLESN 183 DI Q Sbjct: 184 DIFIQTSRQ 192 >gi|224020958|ref|YP_002608191.1| NADH dehydrogenase subunit 6 [Carica papaya] gi|170522370|gb|ACB20480.1| NADH dehydrogenase subunit 6 [Carica papaya] Length = 205 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 11/190 (5%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V Sbjct: 5 VLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVS 64 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124 FLF++MM I R S IG IL E+ N + + + Sbjct: 65 FLFVVMMFHIQKAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRY 124 Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ + Sbjct: 125 TVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFR 184 Query: 179 QLESNPDNSI 188 + + +I Sbjct: 185 RNAISFRRTI 194 >gi|294630805|ref|ZP_06709365.1| NADH dehydrogenase I, J subunit [Streptomyces sp. e14] gi|292834138|gb|EFF92487.1| NADH dehydrogenase I, J subunit [Streptomyces sp. e14] Length = 280 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 2/198 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F++ +A+I + V +R ++S SL + A +L GA F+ ++ +VV Sbjct: 12 TGEAFQFWVLGTVAVIGALCTVFMRKAVHSALSLAGTMIILAVFYLANGAYFLGIVQIVV 71 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L +++ A + Sbjct: 72 YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGILLVAGIANASLKDFAG 131 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + NVE + +++T+Y Y E++G +L+ + IGA+VL R R + R ++L Sbjct: 132 AGKANANGNVEGLASLIFTRYVYAFELTGALLITATIGAMVLTHRERTE--RAKTQRELA 189 Query: 182 SNPDNSIVMVKVKSGKGI 199 V G+ Sbjct: 190 EQRVREGKHVPPLPAPGV 207 >gi|220924014|ref|YP_002499316.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium nodulans ORS 2060] gi|219948621|gb|ACL59013.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium nodulans ORS 2060] Length = 206 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 83/204 (40%), Positives = 126/204 (61%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FFYLF+ + + S F+V+ RNP+ SV LI AFVNAAGLF+L+GAEF+AMI +V Sbjct: 1 MTAAAAFFYLFAAITVASGFMVIASRNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV V FLF++MMLD+D E+ + + +G+ + EL++ ++ + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELRQGFQDYLPVGALIGAVFLVELLLVVGSWAIDPGLV 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + V G N + +G VLYT Y + +I+G +LL++MIGAIVL LR R +KRQD Sbjct: 121 QAPLAVAPGGDRITNTQALGLVLYTNYFFFFQIAGLVLLVAMIGAIVLTLRERPGVKRQD 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 ++ Q ++ + V + +G+ Sbjct: 181 VTVQNARTQAMAVELRNVPTRQGV 204 >gi|9280602|gb|AAF86489.1|AF279442_1 NADH dehydrogenase subunit 6 [Lupinus luteus] Length = 205 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + +GL LLLG +F AMI LVVY+GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE---- 120 + V FLF++MM I I R S IG I E+ N + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTT 120 Query: 121 ------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTQVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|224365671|ref|YP_002608398.1| NADH dehydrogenase subunit 6 [Vitis vinifera] gi|209954195|emb|CAQ77660.1| NADH dehydrogenase subunit 6 [Vitis vinifera] gi|239764731|gb|ACS15202.1| NADH dehydrogenase subunit 6 [Vitis vinifera] Length = 223 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 11/195 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ + S A++S +V +NP++SV I F N +GL LLLG +F AMI VV++G Sbjct: 18 TMILSVSSSPALVSGLMVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIG 77 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE--- 120 A+ V FLF++MM I I R S IG IL E+ N + + Sbjct: 78 AIAVSFLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKT 137 Query: 121 -------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + V N+E +G +LYT Y+ + ILL++MIGAIVL + +KR Sbjct: 138 TSLRYTVYAEKVRSWTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKR 197 Query: 174 QDISKQLESNPDNSI 188 QD+ ++ + +I Sbjct: 198 QDVFRRNAIDSRRTI 212 >gi|170742520|ref|YP_001771175.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium sp. 4-46] gi|168196794|gb|ACA18741.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium sp. 4-46] Length = 206 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 84/204 (41%), Positives = 127/204 (62%), Gaps = 5/204 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FFYLF+ + + S +V+ RNP+ SV LI AFVNAAGLF+L+GAEF+AMI +V Sbjct: 1 MTAAAAFFYLFAAITVASGLVVIAARNPVTSVLFLILAFVNAAGLFVLMGAEFLAMILVV 60 Query: 61 VYVGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV----F 115 VYVGAV V FLF++MMLD+D E+ + + +G+ + EL++ ++ + Sbjct: 61 VYVGAVAVLFLFVVMMLDVDFAELRQGFQDYLPVGALIGAVFLIELLLVVGSWAIDPGLV 120 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 A ++ + N + +G VLYT Y + +I+G ILL++MIGAIVL LR R +KRQD Sbjct: 121 HAPLAVAPGGEQITNTQALGLVLYTNYFFFFQIAGLILLVAMIGAIVLTLRDRPGVKRQD 180 Query: 176 ISKQLESNPDNSIVMVKVKSGKGI 199 I+ Q ++ + KV + +G+ Sbjct: 181 IAVQNARTQALAVELRKVPTRQGV 204 >gi|295311651|ref|YP_003587236.1| NADH dehydrogenase subunit 6 [Citrullus lanatus] gi|259156779|gb|ACV96641.1| NADH dehydrogenase subunit 6 [Citrullus lanatus] Length = 205 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F N +GL LLLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|238023175|ref|ZP_04603601.1| hypothetical protein GCWU000324_03101 [Kingella oralis ATCC 51147] gi|237865558|gb|EEP66698.1| hypothetical protein GCWU000324_03101 [Kingella oralis ATCC 51147] Length = 217 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 3/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY + + + S+ VT +NP+++ L+ F +A +LL+ AEF+ + +V Sbjct: 1 MSFPLILFYTLAAIILFSALKTVTAKNPVHAALWLVLTFCMSAITWLLMQAEFLGITLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G+L A L++ +A Sbjct: 61 VYVGAVMVMFLFVVMMLNIDIEAMRQGFWRHAPAALTVGVLMAALLIMIFVAPDTNLAAF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + +NV ++G +YT Y P E++ +L+L M+ AI L+ R K D + Sbjct: 121 GAMKDIPADYSNVRDLGTQIYTTYLLPFELASVLLVLGMVAAIALVHRKSTRTKYMDPAL 180 Query: 179 QLESNP-DNSIVMVKVKSG 196 Q+ NP + + +V + + Sbjct: 181 QVRVNPNEGRMRLVSMPAE 199 >gi|325921402|ref|ZP_08183259.1| NADH dehydrogenase subunit J [Xanthomonas gardneri ATCC 19865] gi|325548160|gb|EGD19157.1| NADH dehydrogenase subunit J [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 9 MDWVKIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 68 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V SA Sbjct: 69 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPVGVIVAVAMFAQMVTLIGVKARSATPF 128 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 129 PADNAAAQAADVSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 188 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 Q + + MVK+ K + Sbjct: 189 GDQSRVKAGDRLRMVKMAVEKPV 211 >gi|302543435|ref|ZP_07295777.1| NADH dehydrogenase I, J subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461053|gb|EFL24146.1| NADH dehydrogenase I, J subunit [Streptomyces himastatinicus ATCC 53653] Length = 295 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 98/196 (50%), Gaps = 10/196 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + + +R ++S SL + A +L GA F+ ++ +VVY Sbjct: 16 EAVQFWVLGTVAVIGALCTILMRKAVHSALSLAGTMIVLAVFYLANGAYFLGVVQIVVYT 75 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ FLF++M++ + + +G + L +++CA + Sbjct: 76 GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGILLCAGIGNASLKTFDGLG 135 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R S Sbjct: 136 QANSGGNVEGLAALVFTKYVFAFEITGALLITAAVGAMVLTHRERTERAR--------SQ 187 Query: 184 PDNSIVMVKVKSGKGI 199 + S +V++GK + Sbjct: 188 REQSEE--RVRTGKHV 201 >gi|164421182|ref|YP_001648568.1| NADH dehydrogenase subunit 6 [Ptilocaulis walpersi] gi|158938964|gb|ABW83889.1| NADH dehydrogenase subunit 6 [Ptilocaulis walpersi] Length = 185 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 101/181 (55%), Gaps = 1/181 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+F IIS +VV+ NP+YSVF LI AF+NA+ LF+LL +F+A+I L+VYVGA+ Sbjct: 4 IFYLFAFNIIISGIMVVSALNPVYSVFWLIIAFINASILFILLDVDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLV 125 + FLF+IMML++ F IG++ FS + Sbjct: 64 AILFLFVIMMLNLIDYERGKDMSNYLPAGFVIGVIFFITCRIILLSNQFSTFYVNKFDFI 123 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 +N+ G+VLYT Y Y I+ ILL++MIGAIVL +++ K QDI Q+ Sbjct: 124 ENFSNITGFGRVLYTDYYYLFLIASLILLIAMIGAIVLTHEIKKEKKNQDIFIQISRKFW 183 Query: 186 N 186 + Sbjct: 184 D 184 >gi|238062220|ref|ZP_04606929.1| NADH dehydrogenase subunit J [Micromonospora sp. ATCC 39149] gi|237884031|gb|EEP72859.1| NADH dehydrogenase subunit J [Micromonospora sp. ATCC 39149] Length = 256 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 94/197 (47%), Gaps = 2/197 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++ + +A++ + ++ RN ++S L+ + ++L F+ M+ ++VY Sbjct: 17 EEVTFWILAPLALLGAIGMIAARNAVHSALWLVLTMLCLGVFYVLQAGPFIGMVQIIVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+++ FLF++M++ D + RG + + +G+ A L+ + Sbjct: 77 GAIMMLFLFVLMLVGRDASDSLIETLRGQRIAAVVLGLGFAGLVGGGLYRGLGGVSAVGL 136 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 NV+ I ++L+T+Y + E++ +L+ + +GA+VL RR + D +++ Sbjct: 137 EQANAEGNVQGIARLLFTKYVFAFELTSALLITAAVGAMVLAHIERRREDKMDQIATMKA 196 Query: 183 NPDNSIVMVKVKSGKGI 199 K G G+ Sbjct: 197 RFAPG-NYPGPKPGPGV 212 >gi|291004460|ref|ZP_06562433.1| NADH dehydrogenase subunit J [Saccharopolyspora erythraea NRRL 2338] Length = 328 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 97/201 (48%), Gaps = 5/201 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F+ +A++ + +V RN ++S L+ + L++ A F+ ++V Sbjct: 25 TGEAVVFWTLGPLALLGAMGMVFARNAVHSALWLVLTMLCLGVLYMAQSAPFLGFTQIIV 84 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIV--CASNFMVFSAE 118 Y GA+++ FLF++MM+ D + RG L + G+ A L+V A + Sbjct: 85 YTGAIMMLFLFVLMMVGRDSSDSVVEVLRGQRLAAALAGVGFAVLLVTGLARSLTDVPVA 144 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 L+ +G +G++++T Y +P E++ +L+ + +GA+VL + KR +S+ Sbjct: 145 APLNPWSPQGGGAGGLGRLIFTDYLFPFELTSALLITAALGAMVLAYGGKGRAKR--LSQ 202 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 + ++ V G G+ Sbjct: 203 RDMADARFRSARVSPLPGPGV 223 >gi|119897696|ref|YP_932909.1| NADH-ubiquinone oxidoreductase subunit J [Azoarcus sp. BH72] gi|119670109|emb|CAL94022.1| NADH-ubiquinone oxidoreductase, chain J probable [Azoarcus sp. BH72] Length = 200 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 61/198 (30%), Positives = 106/198 (53%), Gaps = 2/198 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY + + + + V+T RNP+++ L+ +F A G++LLL AEF+A+ ++ Sbjct: 1 MEFKTAVFYFLAAILVFAGLRVITARNPVHAALFLVLSFFTAGGIWLLLQAEFLAITLVM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118 VYVGAV+V FLF++MMLDI+++ IGIL +V + + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDRIRQGFWNYLPVGALIGILMVVEMAMVLGGRYFDLDSM 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 +N +G+VLYT Y YP E++ +L+++M+ A+ L LR R+ K S Sbjct: 121 PAPPPAAADYSNTAELGRVLYTDYVYPFELASLVLVVAMVAAVSLTLRKRKGNKYVQPSD 180 Query: 179 QLESNPDNSIVMVKVKSG 196 Q+ + + +VK+ + Sbjct: 181 QVAVKREGRVELVKMPAE 198 >gi|257852736|gb|ACV71380.1| NADH dehydrogenase subunit 6 [Prunus caroliniana] Length = 178 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL +LLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPIPVFRDTSGLLILLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVQS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177 >gi|159039966|ref|YP_001539219.1| NADH dehydrogenase subunit J [Salinispora arenicola CNS-205] gi|157918801|gb|ABW00229.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora arenicola CNS-205] Length = 256 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 93/197 (47%), Gaps = 2/197 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +A++ + +V RN ++S L+ + +++ F+ ++ ++VY Sbjct: 17 EAVTFWILAPLALLGAIGMVAARNAVHSALWLVLTMLCLGVFYVVQAGPFIGLVQIIVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+++ FLF++M++ + RG + + +GI A L+ + Sbjct: 77 GAIMMLFLFVLMLVGRGASDSLIETLRGQRIAALVLGIGFAGLVGTGLYRALAGGTAAGL 136 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 NV+ + ++L+T+Y E++ +L+ + +GA+VL RR R D +++ Sbjct: 137 TAANAEGNVQGVARLLFTKYVLAFELTSALLITAAVGAMVLAHVERRREDRMDQVATMKA 196 Query: 183 NPDNSIVMVKVKSGKGI 199 K G G+ Sbjct: 197 RF-RPGNYPGPKPGPGV 212 >gi|295311694|ref|YP_003587371.1| NADH dehydrogenase subunit 6 [Cucurbita pepo] gi|259156822|gb|ACV96683.1| NADH dehydrogenase subunit 6 [Cucurbita pepo] Length = 205 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F N +GL LLLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHESVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAEKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DLFRRNAIDFRRTI 194 >gi|288917192|ref|ZP_06411561.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp. EUN1f] gi|288351383|gb|EFC85591.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp. EUN1f] Length = 317 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 1/170 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F+L + +A+I+ +V +R+ ++S L+ A +LL A F+ + ++VY Sbjct: 19 EAWTFWLLAPVALIAGLGMVLMRSAVHSALLLVVNLFCVAVFYLLQDAPFLGFVQIIVYT 78 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF++M++ +D + RG + + +G+ A L+V + Sbjct: 79 GAIMVLFLFVLMLVGVDSSDSLVETLRGQRIAAVILGLGFAGLLVFPIGRAIDGGSAAGL 138 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 NV IGK+L+++Y + E +L+++ IG +VL R K Sbjct: 139 DAANSEGNVTAIGKLLFSEYVFVFEAISALLVVAAIGTMVLGHREHTGEK 188 >gi|318057834|ref|ZP_07976557.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces sp. SA3_actG] gi|318077144|ref|ZP_07984476.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces sp. SA3_actF] Length = 304 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 84/169 (49%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + V + ++S L + A +L GA F+ ++ +VV Sbjct: 23 TGEAVQFWILGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 82 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ + + +G + L ++ ++ + Sbjct: 83 YTGAVMMLFLFVVMLVGVTAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQG 142 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + G NV+ + + ++T Y + EI+G +L+ + +GA+VL R R + Sbjct: 143 TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTE 191 >gi|297201631|ref|ZP_06919028.1| NADH dehydrogenase subunit J [Streptomyces sviceus ATCC 29083] gi|197710997|gb|EDY55031.1| NADH dehydrogenase subunit J [Streptomyces sviceus ATCC 29083] Length = 285 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 91/198 (45%), Gaps = 2/198 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F++ +A+I + V +R ++S L + A +L GA F+ ++ +VV Sbjct: 19 TGEAFQFWVLGTVAVIGALCTVFMRKAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVV 78 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L +++ A + Sbjct: 79 YTGAIMMLFLFVVMLVGVTAADSLTETIKGQRWLALLCGLGFGILLFAGIGNASLKQFNG 138 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R +++ Sbjct: 139 LTQANAGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RALTQREMA 196 Query: 182 SNPDNSIVMVKVKSGKGI 199 V G+ Sbjct: 197 ERRVREGKHVPPLPAPGV 214 >gi|134103321|ref|YP_001108982.1| NADH dehydrogenase subunit J [Saccharopolyspora erythraea NRRL 2338] gi|133915944|emb|CAM06057.1| NADH dehydrogenase I chain J [Saccharopolyspora erythraea NRRL 2338] Length = 329 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 97/201 (48%), Gaps = 5/201 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F+ +A++ + +V RN ++S L+ + L++ A F+ ++V Sbjct: 26 TGEAVVFWTLGPLALLGAMGMVFARNAVHSALWLVLTMLCLGVLYMAQSAPFLGFTQIIV 85 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIV--CASNFMVFSAE 118 Y GA+++ FLF++MM+ D + RG L + G+ A L+V A + Sbjct: 86 YTGAIMMLFLFVLMMVGRDSSDSVVEVLRGQRLAAALAGVGFAVLLVTGLARSLTDVPVA 145 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 L+ +G +G++++T Y +P E++ +L+ + +GA+VL + KR +S+ Sbjct: 146 APLNPWSPQGGGAGGLGRLIFTDYLFPFELTSALLITAALGAMVLAYGGKGRAKR--LSQ 203 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 + ++ V G G+ Sbjct: 204 RDMADARFRSARVSPLPGPGV 224 >gi|323649908|ref|YP_004237281.1| NADH dehydrogenase subunit 6 [Ricinus communis] gi|322394288|gb|ADW96045.1| NADH dehydrogenase subunit 6 [Ricinus communis] Length = 217 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 13/196 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +V +NP++SV I F + +GL LLLG +F AMI VVY+GA Sbjct: 1 MILSVLSSPALVSGLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IK 172 V N+E +G +LYT Y + ILL++MIGAIVL + +K Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVK 180 Query: 173 RQDISKQLESNPDNSI 188 RQD+ ++ + +I Sbjct: 181 RQDLFRRNAIDFRRTI 196 >gi|302521203|ref|ZP_07273545.1| NADH dehydrogenase subunit J [Streptomyces sp. SPB78] gi|302430098|gb|EFL01914.1| NADH dehydrogenase subunit J [Streptomyces sp. SPB78] Length = 304 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 84/169 (49%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + V + ++S L + A +L GA F+ ++ +VV Sbjct: 23 TGEAVQFWILGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 82 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ + + +G + L ++ ++ + Sbjct: 83 YTGAVMMLFLFVVMLVGVTAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQG 142 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + G NV+ + + ++T Y + EI+G +L+ + +GA+VL R R + Sbjct: 143 TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTE 191 >gi|164421155|ref|YP_001648557.1| NADH dehydrogenase subunit 6 [Chondrilla aff. nucula CHOND] gi|158668116|gb|ABW76577.1| NADH dehydrogenase subunit 6 [Chondrilla aff. nucula CHOND] Length = 191 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 98/184 (53%), Gaps = 7/184 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+ I S +V++ NP++SV LIFAF NA+ LF+LL EF+A I L+VYVGA+ Sbjct: 4 LFYLFALGVIFSGIMVISSLNPVHSVLWLIFAFTNASALFILLEVEFLAFIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEV--AEPRKKRGFLGSFFIGILAAELIVCASN-----FMVFSAEG 119 + FLF+IMML++ IGI+ I+ N ++ Sbjct: 64 AILFLFVIMMLNLTDFGYNINSDMSNYLPAGLIIGIVFLFEILIWHNHSEGYYLSSDCVP 123 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 V N+E IG+VLYT + Y ++ FIL ++MIGAIVL +I+RQD+ Q Sbjct: 124 IYYNCVIPSPNIEIIGRVLYTDFYYLFLLASFILXVAMIGAIVLTHEINIEIRRQDLFIQ 183 Query: 180 LESN 183 Sbjct: 184 TSRQ 187 >gi|164421121|ref|YP_001648416.1| NADH dehydrogenase subunit 6 [Cinachyrella kuekenthali] gi|158938903|gb|ABW83832.1| NADH dehydrogenase subunit 6 [Cinachyrella kuekenthali] Length = 179 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 104/177 (58%), Gaps = 3/177 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+ +IS +V++ NP++SV L+ AF+ AAGLF+LL +F+A+I L+VYVGA+ Sbjct: 4 LFYLFALSIVISGVMVISALNPVHSVLWLVVAFIGAAGLFILLEVDFLALILLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IMML++ R G + +E+++ + S + + Sbjct: 64 AILFLFVIMMLNLTGLEGTDRSNYLPTGFIIGVVFLSEVLILQTR---ISMGVDPNWNFM 120 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + N+E +G+VLYT Y Y ++ FILL++M+GAIVL + +KRQDI Q Sbjct: 121 EAPNIEVLGRVLYTNYCYLFILASFILLVAMMGAIVLTHDTKIRVKRQDIFLQTSRK 177 >gi|260223135|emb|CBA33395.1| NADH-quinone oxidoreductase subunit J [Curvibacter putative symbiont of Hydra magnipapillata] Length = 260 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 96/159 (60%), Gaps = 1/159 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+FS + + ++F V+T RNP+++ L+ F AA +++LL AEF+++ ++ Sbjct: 1 MNVTTGLFYVFSAVLLFAAFRVITARNPVHAALYLVLTFFQAAMIWMLLKAEFLSITLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MM+DI++E + F + +G ++A E+ + Sbjct: 61 VYVGAVMVLFLFVVMMMDINVENLRVGFWKHFPLAAIVGVVIALEMAAVLMGGFRVVDDP 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMI 158 + NN + +GK+L+TQY LE++ ILL++MI Sbjct: 121 NAVATAAEANNAKELGKLLFTQYLVQLEVAAAILLVAMI 159 >gi|29654730|ref|NP_820422.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA 493] gi|153207244|ref|ZP_01946008.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154707308|ref|YP_001423966.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii Dugway 5J108-111] gi|161831359|ref|YP_001597283.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA 331] gi|165918812|ref|ZP_02218898.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA 334] gi|212218222|ref|YP_002305009.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuK_Q154] gi|29541998|gb|AAO90936.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii RSA 493] gi|120576732|gb|EAX33356.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154356594|gb|ABS78056.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii Dugway 5J108-111] gi|161763226|gb|ABX78868.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA 331] gi|165917536|gb|EDR36140.1| NADH dehydrogenase (ubiquinone), J subunit [Coxiella burnetii RSA 334] gi|212012484|gb|ACJ19864.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuK_Q154] Length = 201 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 116/194 (59%), Gaps = 2/194 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F++F+ + I ++ +V+ RNP+++V L+ AF +A L++++ AEF+A++ + VYVG Sbjct: 6 EVTFFIFAAVLIAAAAMVIISRNPVHAVLFLVLAFFASAVLWMMMQAEFLALVLIFVYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSR 123 AV+ FLF++MML+ID+ + + R + +L ++V S A L Sbjct: 66 AVMTLFLFVVMMLNIDLSDLQQKFVRFLPFGLIAMALLIGMMVVIVSPRHFTVATAHLPH 125 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQLES 182 + +NV+ +G +LY Y YP EI+ ILL+++I AI L R+ + K Q + +QLE+ Sbjct: 126 VASNFSNVKAMGSLLYVDYFYPFEIAAVILLVAIIAAITLAFHGRKPNTKSQRVREQLEA 185 Query: 183 NPDNSIVMVKVKSG 196 +N + ++K+K+ Sbjct: 186 KKENRLRVIKMKTE 199 >gi|133900436|gb|ABO41384.1| NADH dehydrogenase subunit 6 [Drypetes roxburghii] Length = 178 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F +G+ LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFCETSGVLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|145596567|ref|YP_001160864.1| NADH dehydrogenase subunit J [Salinispora tropica CNB-440] gi|145305904|gb|ABP56486.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora tropica CNB-440] Length = 256 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 94/197 (47%), Gaps = 2/197 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +A+I + +V RN ++S L+ + ++L F+ ++ ++VY Sbjct: 17 EAVTFWILAPLALIGAIGMVAARNAVHSALMLVLTMLCLGIFYVLQAGPFIGVVQIIVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+++ FLF++M++ + RG + + +G+ A L+ + + Sbjct: 77 GAIMMLFLFVLMLVGRGASDSLIETLRGQRIAALVLGVGFAGLVGTGMYRALAGSTAVGL 136 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 NV+ I ++L+T+Y E++ +L+ + +GA+VL RR R D +++ Sbjct: 137 TTANAEGNVQGIARLLFTKYVLAFELTSALLITAAVGAMVLAHIERRREDRMDQVATMKA 196 Query: 183 NPDNSIVMVKVKSGKGI 199 K G G+ Sbjct: 197 RF-RPGNYPGPKPGPGV 212 >gi|3617814|emb|CAA08932.1| NADH dehydrogenase subunit 6 [Daucus carota] gi|15705129|gb|AAK00521.1| NADH dehydrogenase subunit 6 [Daucus carota] gi|15809215|gb|AAK00513.1| NADH dehydrogenase subunit 6 [Daucus carota] Length = 205 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S +A++S+ +VV +NP++SV I F N +GL LLLG +F AMI VVY+GA Sbjct: 1 MILSVLSSLALVSALMVVRAKNPVHSVSFSIPVFRNTSGLLLLLGLDFFAMIFPVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG I E+ N + + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYMVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDSRRTI 194 >gi|311897899|dbj|BAJ30307.1| putative NADH-quinone oxidoreductase subunit J [Kitasatospora setae KM-6054] Length = 283 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 96/198 (48%), Gaps = 2/198 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ + +A+ + ++ +R ++S L + A +L GA F+ ++ +VV Sbjct: 4 TGEAVQFWVLAVIAVGGALGMLLMRKAVHSALCLAATMIALAVCYLAQGAVFLGVVQIVV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + + +G + + L +++ A + Sbjct: 64 YTGAIMMLFLFVVMLVGVSAADSLKEQLKGQRVAAALCGLGFGVLLVAGLANAKLRDFTG 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NV+ + ++++T+Y + E++ +L+ + +GA+VL R + +K +QL Sbjct: 124 LAGANAEGNVQGLARLIFTKYVWAFEVTSALLITAAVGAMVLTHREK--VKAPPTQRQLA 181 Query: 182 SNPDNSIVMVKVKSGKGI 199 + + V G+ Sbjct: 182 AQRVKDNIQVPPLPAPGV 199 >gi|133900448|gb|ABO41390.1| NADH dehydrogenase subunit 6 [Erythroxylum coca] Length = 179 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL +LLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEIFFIIDNETIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|329935988|ref|ZP_08285788.1| NADH dehydrogenase subunit J [Streptomyces griseoaurantiacus M045] gi|329304466|gb|EGG48344.1| NADH dehydrogenase subunit J [Streptomyces griseoaurantiacus M045] Length = 284 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 90/183 (49%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + V +R ++S SL + A +L GA F+ ++ +VV Sbjct: 24 TGEAVQFWILGTVAVIGALCTVFMRRAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVV 83 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L +++ A + + Sbjct: 84 YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGVLLLAGIGNASLTQFDG 143 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NV+ + +++T+Y + EI+G +L+ + +GA+VL R R + R +++ Sbjct: 144 LSEANAPGNVQGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RALTQREMS 201 Query: 182 SNP 184 Sbjct: 202 ERR 204 >gi|323149050|ref|YP_004222818.1| NADH dehydrogenase subunit 6 [Vigna radiata] gi|308206756|gb|ADO19893.1| NADH dehydrogenase subunit 6 [Vigna radiata] Length = 205 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG IL E+ N + +++ Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQINTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQ Sbjct: 121 SLIYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|282860728|ref|ZP_06269794.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces sp. ACTE] gi|282564464|gb|EFB70000.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces sp. ACTE] Length = 288 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 97/194 (50%), Gaps = 4/194 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F+L +A+I + V ++ ++S SL + A +L GA F+ ++ +VVY Sbjct: 16 EAVQFWLLGTVAVIGALSTVLMKKAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVYT 75 Query: 64 GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA+++ FLF++M++ + + E K + +L + LI + S G Sbjct: 76 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLAAGCGLGFGVLLIAGIGQASLRSYNGLG 135 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + G NVE + +++T+Y + EI+G +L+ + +GA++L R R + R ++L Sbjct: 136 AANALHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMLLTHRERTE--RAKTQRELS 193 Query: 182 SNPDNSIVMVKVKS 195 S + + + Sbjct: 194 QERVRSSHLPPLPA 207 >gi|29831389|ref|NP_826023.1| NADH dehydrogenase subunit J [Streptomyces avermitilis MA-4680] gi|29608504|dbj|BAC72558.1| putative NADH dehydrogenase I chain J (complex I) [Streptomyces avermitilis MA-4680] Length = 280 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 87/183 (47%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F++ +A+I + V ++ ++S L + A +L GA F+ ++ +VV Sbjct: 12 TGEAFQFWILGTVAVIGALCTVLMKKAVHSALCLAGTMIILAVFYLANGAYFLGVVQIVV 71 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L ++ A E + Sbjct: 72 YTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALVCGLGFGTLLFAGIGNASIKEFDG 131 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R ++L Sbjct: 132 LGTANANGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RAKTQRELS 189 Query: 182 SNP 184 Sbjct: 190 EQR 192 >gi|164421078|ref|YP_001648623.1| NADH dehydrogenase subunit 6 [Agelas schmidti] gi|158938993|gb|ABW83916.1| NADH dehydrogenase subunit 6 [Agelas schmidti] Length = 189 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 69/185 (37%), Positives = 100/185 (54%), Gaps = 4/185 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY F+ I+S +V++ NP++SVF LI AF +A+ LF+LL EF+A++ L+VY Sbjct: 1 MLEGLFYFFALSVILSGIMVISAFNPVHSVFWLILAFTSASALFILLEVEFIALMFLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + FLF+IMML++ F IG++ S+ S Sbjct: 61 VGAIAILFLFVIMMLNLMDFEMGGDMSNFLATGFLIGVVFLINCRVVSHLGRPSFYSFSW 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR----RDIKRQDISK 178 V K N+E IG+VLYT Y Y ++ FILL++M+GAIVL +KRQ I Sbjct: 121 DFVGKTTNIEVIGRVLYTNYYYLFILASFILLVAMVGAIVLTHDRESIVPSSLKRQTIFA 180 Query: 179 QLESN 183 Q+ Sbjct: 181 QISRQ 185 >gi|296040749|gb|ADG85342.1| NADH dehydrogenase subunit 6 [Silene latifolia] Length = 190 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 11/190 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA Sbjct: 1 MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG++ E+ N + + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNP 184 D+ ++ + Sbjct: 181 DVFRRNAIDF 190 >gi|164421137|ref|YP_001648582.1| NADH dehydrogenase subunit 6 [Ectyoplasia ferox] gi|158668128|gb|ABW76588.1| NADH dehydrogenase subunit 6 [Ectyoplasia ferox] Length = 185 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 69/182 (37%), Positives = 104/182 (57%), Gaps = 1/182 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+F IIS +V++ NPIYSVF LI AF+NA+ LF+LL +F+A+I L+VYVGA+ Sbjct: 4 IFYLFAFNVIISGIMVISALNPIYSVFWLIIAFINASVLFILLEVDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI-VCASNFMVFSAEGELSRLV 125 + FLF+IMML++ F IG++ + + + V Sbjct: 64 AILFLFVIMMLNLIDYEKGRDMSNYLPAGFVIGVIFFITCRIIILSSQLSLFSLNRFDYV 123 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 +N+ +G+VLYT Y Y I+ ILL++MIGAI+L +++ K QD+ Q+ Sbjct: 124 ENFSNIIGLGRVLYTDYYYLFLIASLILLVAMIGAIILTHETKKEKKDQDMFIQISRELW 183 Query: 186 NS 187 +S Sbjct: 184 DS 185 >gi|133900534|gb|ABO41433.1| NADH dehydrogenase subunit 6 [Poliothyrsis sinensis] Length = 179 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL +LLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|295837116|ref|ZP_06824049.1| NADH dehydrogenase I, J subunit [Streptomyces sp. SPB74] gi|197697227|gb|EDY44160.1| NADH dehydrogenase I, J subunit [Streptomyces sp. SPB74] Length = 283 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 84/169 (49%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + V + ++S L + A +L GA F+ ++ +VV Sbjct: 23 TGEAVQFWVLGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVV 82 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ + + +G + L ++ ++ + Sbjct: 83 YTGAVMMLFLFVVMLVGVTAADSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQG 142 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + G NV+ + + ++T Y + EI+G +L+ + +GA+VL R R + Sbjct: 143 TGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHRERTE 191 >gi|284992916|ref|YP_003411470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geodermatophilus obscurus DSM 43160] gi|284066161|gb|ADB77099.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geodermatophilus obscurus DSM 43160] Length = 273 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 91/186 (48%), Gaps = 4/186 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+ + +V RN ++S LI + +++ A F+ + ++V Sbjct: 8 TGEAVVFWVLGPIALAGALGMVMSRNAVHSALWLINTMLALGVFYVVQEAPFLGAVQIIV 67 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELI--VCASNFMVFSAE 118 Y GA+++ FLF++M++ D + RG + + +G A ++ A Sbjct: 68 YTGAIMILFLFVLMLVGRDSSDSVVETLRGQRVAALLLGAGFAAVVGAGVARATQDLPVA 127 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + +N+E I +LY++Y E++G +L+ + +GA+VL R +R+ K Sbjct: 128 GLGAVQGAETSNIEAIAGLLYSRYLLAFEVTGALLITAAVGALVLTHVEREAEERR-TQK 186 Query: 179 QLESNP 184 +L Sbjct: 187 ELSRAR 192 >gi|9280596|gb|AAF86486.1|AF279439_1 NADH dehydrogenase subunit 6 [Lupinus luteus] gi|9280600|gb|AAF86488.1|AF279441_1 NADH dehydrogenase subunit 6 [Lupinus mutabilis] Length = 205 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE---- 120 + V FLF++MM I I R S IG IL E+ N + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTT 120 Query: 121 ------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + V N+E +G +LYT Y + ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|328884321|emb|CCA57560.1| NADH-ubiquinone oxidoreductase chain J [Streptomyces venezuelae ATCC 10712] Length = 275 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 91/198 (45%), Gaps = 4/198 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ +A+I + + +R ++S L + A +L GA F+ ++ +VVY Sbjct: 14 EAFQFWVLGTVAVIGALCTILMRKAVHSALCLAGTMIILAVFYLANGAYFLGIVQIVVYT 73 Query: 64 GAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA+++ FLF++M++ + + E K + + L N + G Sbjct: 74 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWWAVACGLGFGILLAAGIGNASLKEFTGLG 133 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + G NVE + +++T+Y + EI+G +L+ + +GA+VL R R + R ++L Sbjct: 134 AANSAHGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RAATQRELS 191 Query: 182 SNPDNSIVMVKVKSGKGI 199 V G+ Sbjct: 192 EQRVREGKHVPPLPAPGV 209 >gi|239980143|ref|ZP_04702667.1| NADH dehydrogenase subunit J [Streptomyces albus J1074] gi|291451998|ref|ZP_06591388.1| NADH dehydrogenase subunit J [Streptomyces albus J1074] gi|291354947|gb|EFE81849.1| NADH dehydrogenase subunit J [Streptomyces albus J1074] Length = 271 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 94/198 (47%), Gaps = 2/198 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A++ + V ++ ++S L + A +L GA F+ ++ +VV Sbjct: 11 TGEAVQFWILGTVAVLGALSTVLMKKAVHSALCLAATMIVLAVFYLANGAYFLGIVQIVV 70 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L +++ A V ++ Sbjct: 71 YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALAALGFGILLIAGIGQVGISQFNG 130 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G NV+ + +++T+Y + EI+G +L+ + +GA++L R R + R ++L Sbjct: 131 LAAANSGGNVQGLAALIFTKYVFAFEITGALLITATVGAMLLTHRERTE--RASTQRELA 188 Query: 182 SNPDNSIVMVKVKSGKGI 199 V G+ Sbjct: 189 EKRVRENTHVPPLPAPGV 206 >gi|13449312|ref|NP_085495.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] gi|48474289|sp|P60498|NU6M_BRACM RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|12768|emb|CAA48326.1| NADH dehydrogenase subunit 6 [Brassica rapa] gi|6851015|emb|CAA69769.3| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] gi|80978898|gb|ABB54698.1| NADH dehydrogenase subunit 6 [Brassica oleracea var. botrytis] Length = 205 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG++ E+ N + + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|212212191|ref|YP_002303127.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuG_Q212] gi|212010601|gb|ACJ17982.1| NADH-quinone oxidoreductase chain J [Coxiella burnetii CbuG_Q212] Length = 201 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 116/194 (59%), Gaps = 2/194 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F++F+ + I ++ +V+ RNP+++V L+ AF +A L++++ AEF+A++ + VYVG Sbjct: 6 EVTFFIFAAVLIAAAAMVIISRNPVHAVLFLVLAFFASAVLWMMMQAEFLALVLIFVYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSR 123 AV+ FLF++MML+ID+ + + R + +L ++V S A L Sbjct: 66 AVMTLFLFVVMMLNIDLSDLQQKFVRFLPFGLIAMALLIGMMVVIVSPRHFTVATAHLPH 125 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQLES 182 + +NV+ +G +LY Y YP EI+ ILL+++I AI L R+ + K Q + +QLE+ Sbjct: 126 VASNFSNVKAMGSLLYVDYFYPFEIAAVILLVAIIAAITLAFHGRKPNTKFQRVREQLEA 185 Query: 183 NPDNSIVMVKVKSG 196 +N + ++K+K+ Sbjct: 186 KKENRLRVIKMKTE 199 >gi|164421042|ref|YP_001648672.1| NADH dehydrogenase subunit 6 [Plakortis angulospiculatus] gi|158939032|gb|ABW83952.1| NADH dehydrogenase subunit 6 [Plakortis angulospiculatus] Length = 197 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 4 LFYAITLAILVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE------- 118 + FLF+IMML++ D+E +GS L E+ + +V+S E Sbjct: 64 AILFLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNEDTDYTNL 123 Query: 119 ------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 ++S + K +N+E +G++LYT Y Y ++ FILL++MIGAIVL ++K Sbjct: 124 TDLLDSWDISIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q N Sbjct: 184 RQDLFIQTSRN 194 >gi|289665182|ref|ZP_06486763.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 227 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 9 MDWVTIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 68 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V SA Sbjct: 69 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRSATPF 128 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 129 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 188 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 189 GEQSRVKAGDRLRMVKMAVEKPV 211 >gi|164421028|ref|YP_001648479.1| NADH dehydrogenase subunit 6 [Aplysina fulva] gi|158668077|gb|ABW76540.1| NADH dehydrogenase subunit 6 [Aplysina fulva] Length = 190 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 7/184 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F+LF + S +V++ NP++SV LI AF NA+ LF+LL EF+A+I L++YVGA+ Sbjct: 4 LFFLFGVNVLFSGIMVISALNPVHSVLWLIVAFTNASALFILLNVEFIALIFLIIYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-------FMVFSAEG 119 + FLF+IMML++ L IGI+ I N ++SA Sbjct: 64 AILFLFVIMMLNLADLGGSEDMSNYLLAGLIIGIVFLFEIWIWQNHQETPPMAFIYSAGI 123 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 N+E IG++LYT+ Y ++ F+LL++MIGAIVL +IKRQDI Q Sbjct: 124 NYWDYTAAYTNIEIIGRILYTELYYLFIVASFVLLVAMIGAIVLTHDMGTEIKRQDIFIQ 183 Query: 180 LESN 183 Sbjct: 184 TSRQ 187 >gi|257852688|gb|ACV71356.1| NADH dehydrogenase subunit 6 [Abatia parviflora] Length = 178 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL +LLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + + Sbjct: 61 IKIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKIRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|23268295|gb|AAN11292.1| NADH dehydrogenase subunit 6 [Lupinus albus] Length = 205 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE---- 120 + V FLF++M+ I I R S IG IL E+ N + + Sbjct: 61 IAVSFLFVVMLFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTT 120 Query: 121 ------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + V N+E +G +LYT Y + ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|317097125|ref|YP_004123257.1| NADH dehydrogenase subunit 6 [Plakina jani] gi|308912726|gb|ADO51484.1| NADH dehydrogenase subunit 6 [Plakina jani] Length = 197 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 14/190 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNMDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-------- 118 + FLF+IMML++ D+E A +GS L E+ + +V+S Sbjct: 65 ILFLFVIMMLNLTDLEGAGDMSNYIPIGSVMGVFLLFEIFIMGREAIVYSNRDTDYENLM 124 Query: 119 -----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++S + K +N+E +G++LYT Y Y ++ FILL++MIGAIVL ++KR Sbjct: 125 DVLDFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELKR 184 Query: 174 QDISKQLESN 183 QD+ Q N Sbjct: 185 QDLFIQTSRN 194 >gi|133900462|gb|ABO41397.1| NADH dehydrogenase subunit 6 [Hasseltia floribunda] gi|133900538|gb|ABO41435.1| NADH dehydrogenase subunit 6 [Prockia crucis] gi|133900548|gb|ABO41440.1| NADH dehydrogenase subunit 6 [Salix reticulata] Length = 179 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL +LLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|33239634|ref|NP_874576.1| NADH dehydrogenase subunit J [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237159|gb|AAP99228.1| NAD(P)H-quinone oxidoreductase chain 6 [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 200 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + + + I S VV + N +YS F L F++ AGL+LLL A FVA ++V Sbjct: 6 STEQICFLILASVIISGSLGVVLIENIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ E+ + + FF G + A L+ + + Sbjct: 66 YVGAVNVLILFAIMLVNKREELKPIAGLQ--IRRFFSGCVCAGLLALLFRVNLTTKWATP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 E IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 GPQAIGEEATERIGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 168 >gi|300782460|ref|YP_003762751.1| NADH dehydrogenase I subunit J [Amycolatopsis mediterranei U32] gi|299791974|gb|ADJ42349.1| NADH dehydrogenase I subunit J [Amycolatopsis mediterranei U32] Length = 291 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 89/176 (50%), Gaps = 5/176 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ ++++ + ++ RN ++S L+ ++ L+++ A F+ ++V Sbjct: 18 TGEAIAFWVLGPVSLLGALGMIFSRNAVHSALWLVLTMLSLGALYMIQSAPFLGFTQIIV 77 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCAS--NFMVFSAE 118 Y GA+++ FLF++M++ + + RG L + +GI A L+ + Sbjct: 78 YTGAIMMLFLFVLMLVGRESSDSVVEVLRGQRLAATVLGIGLAALLATGIYRALENVTPA 137 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRRDIK 172 L G + +G++++T Y +P E++ +L+ + IGA+VL RH + K Sbjct: 138 IPLDSATPAGGGPKGLGRLIFTDYLFPFELTSALLITAAIGAMVLAFTDRHGKGGK 193 >gi|317097475|ref|YP_004123691.1| NADH dehydrogenase subunit 6 [Plakina sp. DVL-2010] gi|308912635|gb|ADO51399.1| NADH dehydrogenase subunit 6 [Plakina sp. DVL-2010] Length = 197 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 4 LFYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS--------- 116 + FLF+IMML++ D+E A +GS L E+ + +V+S Sbjct: 64 AILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEIFIIGREAIVYSNRDSDYENL 123 Query: 117 ----AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 ++S + K +N+E +G++LYT Y Y ++ FILL++MIGAIVL ++K Sbjct: 124 TDVLGFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q N Sbjct: 184 RQDLFIQTSRN 194 >gi|63025141|ref|YP_232806.1| NADH dehydrogenase subunit 6 [Tethya actinia] gi|37961475|gb|AAP59065.1| NADH dehydrogenase subunit 6 [Tethya actinia] Length = 187 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 71/182 (39%), Positives = 110/182 (60%), Gaps = 5/182 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYLF+F IIS +V++ NP++S+ LI AF +AA LF+ L +F+A I L+VYVGA+ Sbjct: 4 LFYLFAFSVIISGIMVISALNPVHSILWLIVAFSSAAVLFIFLEVDFIAFIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS--- 122 + FLF+IMML++ D+ + F IG++ ++ S+ + G ++ Sbjct: 64 AILFLFVIMMLNLTDLADSFQDMSNYVPIGFLIGVIIFFKVLIFSSGKLSGLSGVINDFR 123 Query: 123 -RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + K +N+E +G+VLYT Y Y ++ F+LL++MIGAIVL R +IKRQDI Q+ Sbjct: 124 WDFLEKVSNIEVLGRVLYTDYYYYFLLASFVLLVAMIGAIVLTHDLRVEIKRQDIFIQIS 183 Query: 182 SN 183 Sbjct: 184 RQ 185 >gi|133900454|gb|ABO41393.1| NADH dehydrogenase subunit 6 [Flacourtia jangomas] gi|133900536|gb|ABO41434.1| NADH dehydrogenase subunit 6 [Populus maximowiczii] gi|257852690|gb|ACV71357.1| NADH dehydrogenase subunit 6 [Idesia polycarpa] Length = 178 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL +LLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|58582849|ref|YP_201865.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427443|gb|AAW76480.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas oryzae pv. oryzae KACC10331] Length = 227 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +L FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 9 MDWVTLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 68 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V SA Sbjct: 69 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIMAVAMLAQMVTLIGVKARSATPF 128 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 129 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 188 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 189 GEQSRVKAGDRLRMVKMAVEKPV 211 >gi|294788066|ref|ZP_06753310.1| NADH dehydrogenase (ubiquinone), J subunit [Simonsiella muelleri ATCC 29453] gi|294484359|gb|EFG32042.1| NADH dehydrogenase (ubiquinone), J subunit [Simonsiella muelleri ATCC 29453] Length = 215 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 110/197 (55%), Gaps = 3/197 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FYLF+ + + + V +NP+++ L+ F +A ++LL+ AEF+ + +V Sbjct: 1 MTFQLILFYLFAAIILYGALQTVLAKNPVHATLHLVLTFCVSAMMWLLMQAEFLGITLVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MML+IDIE R + +G+L A + + + + Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRKGFWRHAPAAMVVGVLMAVALIAILVAPDTALNQF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + +NV ++G LYT Y + E++ +L+L M+ AI L+ R + KR D + Sbjct: 121 GLMKDIPADYSNVRDLGIQLYTTYMWQFELAAVLLVLGMVAAIALVHRKSTNPKRIDPAD 180 Query: 179 QLESNPDN-SIVMVKVK 194 Q++ N + +VK++ Sbjct: 181 QVKVNAAEGRMRLVKME 197 >gi|186920131|ref|YP_001874785.1| NADH dehydrogenase subunit 6 [Hemiselmis andersenii] gi|186461077|gb|ACC78239.1| NADH dehydrogenase subunit 6 [Hemiselmis andersenii] Length = 208 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 75/203 (36%), Positives = 102/203 (50%), Gaps = 17/203 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+++ F FS + + V+T +NPI+SV L+ F N +GL +LLG EF+A + L+VY Sbjct: 1 MEAILFLFFSSLTLTCGLFVITSKNPIHSVLFLVLVFFNVSGLLILLGVEFLAFLFLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA------------- 109 VGA+ V FLFI+MML I I + R +G I+ Sbjct: 61 VGAIAVLFLFIVMMLSIKIPEYKLIIYRYIPIGVILGTGFLCEILIVFESELSSLIVSPF 120 Query: 110 ----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 N ++ V N+E VLYT YAY I+G ILL+SMIGAI L L Sbjct: 121 GKLTFNTFYLNSITLWDVNVVPITNIEVFAGVLYTHYAYFFIIAGIILLVSMIGAITLTL 180 Query: 166 RHRRDIKRQDISKQLESNPDNSI 188 R DIKRQ I KQ++ +I Sbjct: 181 HRRIDIKRQKIYKQVQKEFAKTI 203 >gi|9280598|gb|AAF86487.1|AF279440_1 NADH dehydrogenase subunit 6 [Lupinus angustifolius] Length = 205 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA Sbjct: 1 MILSVLSSPALVSGLMVAHAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE---- 120 + V FLF++MM I I R S IG IL E+ N + + Sbjct: 61 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTT 120 Query: 121 ------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + V N+E +G +LYT Y + ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVGSLILLVAMIGAIVLTMHRTTQVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|77166014|ref|YP_344539.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosococcus oceani ATCC 19707] gi|254436307|ref|ZP_05049813.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nitrosococcus oceani AFC27] gi|76884328|gb|ABA59009.1| NADH dehydrogenase subunit J [Nitrosococcus oceani ATCC 19707] gi|207087997|gb|EDZ65270.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nitrosococcus oceani AFC27] Length = 201 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 116/197 (58%), Gaps = 3/197 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+F+ + + ++ +VVTVRNP+ + L+ AF +A ++LLL AEF+A++ ++VY Sbjct: 1 MEKTLFYIFAAILLFAATMVVTVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGE 120 +GAV+V FLF++MMLD+++ + R F + +L A +IV S Sbjct: 61 IGAVMVLFLFVVMMLDMNLAPLQEGFARYLPVGFLVAVLIAIEMIIVLGSKNFGLDQFTA 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + +N + +G +LYT Y YP E++ ILL++++ A + + RR K QD ++Q+ Sbjct: 121 PASRGADYSNTKELGNLLYTVYVYPFELASVILLVAIV-AAIALALRRRPSKAQDPAQQV 179 Query: 181 ESNPDNSIVMVKVKSGK 197 P + + +VK+ + K Sbjct: 180 RVRPQDRVRLVKMAAEK 196 >gi|11497476|ref|NP_042266.1| NADH dehydrogenase (ubiquinone), subunit 6 [Prototheca wickerhamii] gi|3122569|sp|Q37626|NU6M_PROWI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|467867|gb|AAD12654.1| NADH dehydrogenase (ubiquinone), subunit 6 [Prototheca wickerhamii] Length = 207 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 109/205 (53%), Gaps = 18/205 (8%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+FS + +IS LV+ RNP++SV L+ F NAAGL +LLG +F A+I LVVYVG Sbjct: 2 DFLFYIFSSLTLISGSLVIQARNPVHSVLFLVLVFFNAAGLLVLLGLDFFALIFLVVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-------------N 111 A+ V FLF++MML+I I ++ R +G+L I N Sbjct: 62 AIAVLFLFVVMMLNIRITEISEKRLRYLPVGGVLGVLFLFEICILIDNDCIPLLSYDIEN 121 Query: 112 FMVFSAEGELSRLVF-----KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + +LS + + + ++ +G +LYT Y Y ++ ILL++MIGAIVL ++ Sbjct: 122 TALLANYNQLSFIDWRMYLSTSHTIDALGSLLYTYYFYFFLVASLILLVAMIGAIVLTMQ 181 Query: 167 HRRDIKRQDISKQLESNPDNSIVMV 191 IKRQ + Q + +I V Sbjct: 182 KGIRIKRQQVFLQNTRDFAKTIRKV 206 >gi|166712605|ref|ZP_02243812.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzicola BLS256] Length = 219 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +L FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVTLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V SA Sbjct: 61 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q N + MVK+ K + Sbjct: 181 GEQSRVKAGNRLRMVKMAVEKPV 203 >gi|317097391|ref|YP_004123598.1| NADH dehydrogenase subunit 6 [Plakina crypta] gi|308912604|gb|ADO51370.1| NADH dehydrogenase subunit 6 [Plakina crypta] Length = 197 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 4 LFYAITLAVLVSGIMVISALNPIHSVFWLIAGFLGASALFILLNIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE------- 118 + FLF+IMML++ D+E A +GS L E + +V+S Sbjct: 64 AILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEXFIIGREVVVYSNRDSDYENL 123 Query: 119 ------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 ++S + K +N+E +G++LYT Y Y ++ FILL++MIGAIVL ++K Sbjct: 124 MDVLYFWDVSIEIIKFSNIEALGRILYTDYFYSFILASFILLVAMIGAIVLTHELGIELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q+ N Sbjct: 184 RQDLFIQMSRN 194 >gi|9653241|ref|NP_062487.1| NADH dehydrogenase subunit 6 [Chondrus crispus] gi|1352589|sp|P48924|NU6M_CHOCR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1334488|emb|CAA87610.1| NADH dehydrogenase (ubiquinone), subunit 6 [Chondrus crispus] Length = 204 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYLFS A+ISS +V+ + N ++SV LI F N AGL LLLG EF + + ++ Sbjct: 1 MNIDIFLFYLFSIFALISSLMVIGLTNAVHSVLFLILVFCNVAGLLLLLGPEFFSFMLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGA+ V FLF++MML+I ++ + ++ + + Sbjct: 61 VYVGAIAVLFLFVVMMLNIKLKSTNISFSSLWPIGILTFVILLSQFFSSFYELDLVKFQG 120 Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + N++ IGKVLYT + I G ILL++MIG IVL + R D+K+ Sbjct: 121 KELFFISWANENSNLTNIKVIGKVLYTHFNLLFLICGLILLVAMIGVIVLTMHQRVDVKK 180 Query: 174 QDISKQLESNPDNSIVMV 191 Q I+ QL N I + Sbjct: 181 QQIALQLARTAPNVIKFI 198 >gi|296040751|gb|ADG85343.1| NADH dehydrogenase subunit 6 [Silene noctiflora] Length = 195 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S +A++S +VV +NP++SV I F N AGL L LG +F AMI LVVY+GA Sbjct: 1 MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCNTAGLLLFLGLDFFAMIFLVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V FLF++MM I I R S IG++ E+ N + + + + Sbjct: 61 IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNETIPLLPTQRTTI 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 V N+E +G +LYT Y +S ILL++MIGAIVL + +KRQ Sbjct: 121 SLRYTGYTGKVRSWTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDFRRTI 194 >gi|302035983|ref|YP_003796305.1| NADH-quinone oxidoreductase membrane subunit J [Candidatus Nitrospira defluvii] gi|300604047|emb|CBK40379.1| NADH-quinone oxidoreductase, membrane subunit J [Candidatus Nitrospira defluvii] Length = 206 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +FF+ F+ + +S LVV +RNP+YS SL+ F + AGL++ L AEF+A + +VVY Sbjct: 38 MDHIFFFYFAAVIAATSLLVVALRNPVYSALSLLIMFFHVAGLYVTLHAEFLAAVQIVVY 97 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +LF++M+L I E E + + +L E+I+ +A + Sbjct: 98 AGAILVLYLFVVMLLSIKSE--ERYHSQLPVAGLLGVMLCTEVILLFIQSRTGAAAPAAA 155 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + N E IG+ LY+ Y +P E++ ILL++MIGAI+L + Sbjct: 156 DPIAGPGNTEMIGEALYSTYLFPFEVASLILLVAMIGAIILAKK 199 >gi|296268282|ref|YP_003650914.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Thermobispora bispora DSM 43833] gi|296091069|gb|ADG87021.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobispora bispora DSM 43833] Length = 296 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 97/182 (53%), Gaps = 4/182 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S+ F++ + ++++++F +V R +YS L ++ A L+ + A F+A + ++VY Sbjct: 3 ESITFWVLAVVSVLAAFGLVLSRKAVYSALMLGVVMLSLAVLYAVQDAPFLAAVQIIVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV++ FLF++M++ +D + +G + G+ L+ A + SA L Sbjct: 63 GAVMMLFLFVLMLIGVDTSDSLVETIKGQRFWAIVAGLGFVALLGLAVGNVAVSAATGLG 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 K +NV ++ ++++T++ + E++ +L+ + +GA+VL R RR K K L Sbjct: 123 EE-GKASNVLSLAELIFTRHVFAFEVTSALLITAALGAMVLAHRERRTPKP--TQKDLSR 179 Query: 183 NP 184 Sbjct: 180 RR 181 >gi|84624715|ref|YP_452087.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577687|ref|YP_001914616.1| NADH dehydrogenase subunit J [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368655|dbj|BAE69813.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522139|gb|ACD60084.1| NADH-ubiquinone oxidoreductase Nqo10 subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 220 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +L FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 2 MDWVTLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V SA Sbjct: 62 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIMAVAMLAQMVTLIGVKARSATPF 121 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204 >gi|329909996|ref|ZP_08275181.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium IMCC9480] gi|327546333|gb|EGF31352.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium IMCC9480] Length = 221 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 118/196 (60%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY FS + ++++ V+T RNP++S L+ +F +AA ++LLL AEF+A++ ++ Sbjct: 1 MEFKTALFYAFSAILVMAALKVITDRNPVHSALFLVLSFFSAAAIWLLLQAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+++ + FIG+L + ++ + + Sbjct: 61 VYVGAVMVLFLFVVMMLDINVDKMREGFWGYLPFAAFIGVLIVLEMSAVLLQAFWAPDAQ 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + +GK++YT+Y + EI+ ILLL+++ A+ L LR R+D K D ++ + Sbjct: 121 VPSAASTIGTTKELGKLIYTEYVFAFEIAAAILLLAIVAAVALTLRKRKDSKYFDPAEAV 180 Query: 181 ESNPDNSIVMVKVKSG 196 + + + +VK+KS Sbjct: 181 KVKASDRVRIVKMKSE 196 >gi|331699303|ref|YP_004335542.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudonocardia dioxanivorans CB1190] gi|326953992|gb|AEA27689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudonocardia dioxanivorans CB1190] Length = 274 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 97/203 (47%), Gaps = 4/203 (1%) Query: 1 MVM-QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 M + +S+ F++ +A+ + +V RN ++S L+ ++ L+++ A F+ + + Sbjct: 16 MTLGESIAFWILGIVALGGALGMVFARNAVHSALFLVMTMLSLGILYIVQQAPFLGFVQI 75 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG---FLGSFFIGILAAELIVCASNFMVFS 116 +VY GAV++ FLF++M++ D + RG +G+ + A + + Sbjct: 76 IVYTGAVMMLFLFVLMLVGRDSSDSVVEVLRGQRIAGLLLGLGLALLLVAAVARSLTSVT 135 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 G + L NN+ +G++++T Y P E++ +L+ + +GA+VL + +++ Sbjct: 136 PAGLGANLQGSNNNLPGLGRLIFTDYLLPFELTSALLITAALGAMVLAHAQTKSHEKRGQ 195 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 + + V G G+ Sbjct: 196 RATVLARLRGEHARVSPLPGPGV 218 >gi|115494865|ref|YP_778635.1| NADH dehydrogenase subunit 6 [Chrysopathes formosa] gi|82792226|gb|ABB90975.1| NADH dehydrogenase subunit 6 [Chrysopathes formosa] Length = 210 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 24/208 (11%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY +F AI S +V++ NP++S+F L+ AF ++A LF+LLG +F+A+I L++Y Sbjct: 1 MILICFYTLAFGAIASGIMVISALNPVHSIFWLVVAFTSSAALFILLGVDFIALIFLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK--KRGFLGSFFIGILAAELIV--CASNFMVFSAE 118 VGA+ + FLF+IM+L++ R + IG+ L+ AS++++ S Sbjct: 61 VGAIAILFLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLAIGTLLFSEVASSWLIMSGP 120 Query: 119 G----------------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + K +N+E IG++LYT Y Y ++ FILL+++IGAIV Sbjct: 121 YVHRGSFRAEIGSSWDLANPWFLIKYHNIEAIGRILYTDYYYIFILASFILLVALIGAIV 180 Query: 163 LMLRHRRDI----KRQDISKQLESNPDN 186 L ++ K+QDI Q + Sbjct: 181 LTQEIGSEVGPTAKKQDIFFQTSRAQEE 208 >gi|294624669|ref|ZP_06703339.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666768|ref|ZP_06732002.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601025|gb|EFF45092.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603429|gb|EFF46846.1| NADH dehydrogenase subunit J [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 219 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M S+ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVSIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V SA Sbjct: 61 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 181 GEQSRVKAGDRLRMVKMAVEKPV 203 >gi|21243423|ref|NP_643005.1| NADH dehydrogenase subunit J [Xanthomonas axonopodis pv. citri str. 306] gi|21108975|gb|AAM37541.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas axonopodis pv. citri str. 306] Length = 220 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 2 MDWVTIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V SA Sbjct: 62 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 121 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204 >gi|78048400|ref|YP_364575.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036830|emb|CAJ24523.1| NADH-ubiquinone oxidoreductase NQO10 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 219 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +L FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 1 MDWVTLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V SA Sbjct: 61 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 120 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 121 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 180 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 181 GEQSRVKAGDRLRMVKMAVEKPV 203 >gi|109156563|ref|YP_654373.1| NADH dehydrogenase subunit 6 [Nematostella sp. JVK-2006] gi|108744126|gb|ABG02347.1| NADH dehydrogenase subunit 6 [Nematostella sp. JVK-2006] Length = 199 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 112/196 (57%), Gaps = 19/196 (9%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY SF + S +V++ NP++SVF L+ AF ++A LF+LLG +F+A++ +++YVGA Sbjct: 1 MCFYALSFGTVASGIMVISALNPVHSVFWLVVAFTSSAALFVLLGVDFIALMFVIIYVGA 60 Query: 66 VIVFFLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 + + FLF+IMML++ + ++ +G+ F +A+ ++ ++ Sbjct: 61 IAILFLFVIMMLNLADFSPAFRLGGEADMTNYVPIGLAIGTLFFEAIASSWLIMGGPYVH 120 Query: 115 FSAEGELS----RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 S+ G + + K +N+E IG++LYT Y ++ FILL++MIGAIVL + Sbjct: 121 KSSLGTWNLANPWFLTKYHNIEAIGQILYTDCYYLFILASFILLVAMIGAIVLTQEIGSE 180 Query: 171 I----KRQDISKQLES 182 + K+Q+I Q+ Sbjct: 181 VGPAAKKQNIFSQISR 196 >gi|332285008|ref|YP_004416919.1| NADH-ubiquinone oxidoreductase, chain J [Pusillimonas sp. T7-7] gi|330428961|gb|AEC20295.1| NADH-ubiquinone oxidoreductase, chain J [Pusillimonas sp. T7-7] Length = 212 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 62/195 (31%), Positives = 111/195 (56%), Gaps = 1/195 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ FY+ + + ++++F V+T +P+ V LI F A+ +++L GAEF++++ ++ Sbjct: 1 MIFSTILFYVLALVLVVAAFRVITANSPVTGVLHLILTFFTASMIWMLQGAEFLSLLLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLD+ ++ K IG++ + A G Sbjct: 61 VYVGAVMVLFLFVVMMLDVRMDALRAGMKTYLPMGLIIGLIMVLEMAFVLAKSWLGA-GP 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + +N +G +YT Y + ++I G ILL+ MI AI L LR R D+KR + S+Q+ Sbjct: 120 AAVIADDVDNTHALGVAMYTDYVFAVQIGGVILLVGMIAAIALTLRKRADVKRTNPSEQV 179 Query: 181 ESNPDNSIVMVKVKS 195 + + + MV + S Sbjct: 180 KVKAQDRLRMVSIPS 194 >gi|72383361|ref|YP_292716.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL2A] gi|72003211|gb|AAZ59013.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL2A] Length = 200 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + S + + S VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 STELICFLILSAVIVSGSLAVVLLENIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQILV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++ + R G + L++ + + Sbjct: 66 YVGAVNVLILFAIMLVNNKEKLKPIKGLRT--RKLISGGVCGGLLILLLRVSITTKWNLP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 E IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 GPTSIGEEATERIGEHLFTDYLLPFELASILLLMAMIGAIVLARR 168 >gi|317134294|ref|YP_004123149.1| NADH dehydrogenase subunit 6 [Plakina trilopha] gi|308912666|gb|ADO51428.1| NADH dehydrogenase subunit 6 [Plakina trilopha] Length = 197 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 14/192 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 4 LFYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS--------------NF 112 + FLF+IMML++ +G+ I N Sbjct: 64 AILFLFVIMMLNLTDLGGAGDMSNYIPIGSVMGVFLLFEIFIMGREAIVYSNRDTDYENL 123 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 M ++S + K +N+E +G++LYT Y Y ++ FILL++MIGAIVL ++K Sbjct: 124 MDVLDFWDVSIEIIKFSNIEALGRILYTNYFYLFILASFILLVAMIGAIVLTHELGIELK 183 Query: 173 RQDISKQLESNP 184 RQD+ Q N Sbjct: 184 RQDLFIQTSRNF 195 >gi|133900466|gb|ABO41399.1| NADH dehydrogenase subunit 6 [Homalanthus populneus] Length = 179 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|256396783|ref|YP_003118347.1| NADH dehydrogenase subunit J [Catenulispora acidiphila DSM 44928] gi|256363009|gb|ACU76506.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora acidiphila DSM 44928] Length = 287 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 91/183 (49%), Gaps = 4/183 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ FY+ +A++ + V + ++S SL + A +L GA F+ ++ +VVY Sbjct: 25 EAFQFYVLGAVALLGALGTVFSKKAVHSALSLAMTMICLAMFYLAQGAYFLGVVQIVVYT 84 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+++ FLF++M++ + + +G + I A LI+ A Sbjct: 85 GAIMMLFLFVLMLVGVSSADSLVETIKGQRKLAVLAAIAFAVLIMVALGRARLGTFAGSG 144 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISKQ 179 G NV+N+ +++++Y + E++ +L+ + +GA+V+ R R R +R+ + + Sbjct: 145 PANAGGGNVKNLADLIFSKYFWAFEVTSALLITAAVGAMVMTHRERLVARKSQRELVEDR 204 Query: 180 LES 182 + + Sbjct: 205 VRT 207 >gi|325924684|ref|ZP_08186122.1| NADH dehydrogenase subunit J [Xanthomonas perforans 91-118] gi|325544890|gb|EGD16235.1| NADH dehydrogenase subunit J [Xanthomonas perforans 91-118] Length = 220 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +L FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 2 MDWVTLAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V SA Sbjct: 62 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKARSATPF 121 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 +Q + + MVK+ K + Sbjct: 182 GEQSRVKAGDRLRMVKMAVEKPV 204 >gi|110225673|ref|YP_665679.1| NADH dehydrogenase subunit 6 [Nephroselmis olivacea] gi|6066188|gb|AAF03206.1|AF110138_38 NADH dehydrogenase subunit 6 [Nephroselmis olivacea] Length = 197 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 7/184 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS +AII LV+ +NP++SV LI F +AAGL L+L +F AM+ LVVYVGA+ Sbjct: 1 MFSIFSSLAIICGILVIRAKNPVHSVLFLILVFCHAAGLLLMLDLDFFAMVFLVVYVGAI 60 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGELS-- 122 V FLF++MML+I IE IG++ L+V +F+ + L+ Sbjct: 61 AVLFLFVVMMLNIKIEEVYETALPYLPLGGLIGLIFVTEILLVVERDFIPMISSSSLNLQ 120 Query: 123 ---RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 L + ++ IG+++YT Y + ++ ILL++MIGAIVL + +KRQ++ Q Sbjct: 121 YIQFLPETSSTIQAIGELIYTYYFFYFIVASLILLIAMIGAIVLTMYKGAGVKRQEVFFQ 180 Query: 180 LESN 183 Sbjct: 181 NARE 184 >gi|317097235|ref|YP_004123364.1| NADH dehydrogenase subunit 6 [Plakortis simplex] gi|308912757|gb|ADO51513.1| NADH dehydrogenase subunit 6 [Plakortis simplex] Length = 197 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 4 LFYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS--------------NF 112 + FLF+IMML++ +G+ I NF Sbjct: 64 AILFLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNGDTDYANF 123 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 M ++S + K +N+E +G+VLYT Y Y ++ FILL++MIGAIVL ++K Sbjct: 124 MDVLDFSDVSLEIIKFSNIEALGRVLYTDYFYSFILASFILLVAMIGAIVLTHELGIELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q+ N Sbjct: 184 RQDLFIQISRN 194 >gi|282897415|ref|ZP_06305417.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Raphidiopsis brookii D9] gi|281198067|gb|EFA72961.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Raphidiopsis brookii D9] Length = 214 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 2/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +QS+ F + M I ++ VV N +YS F L F++ AGL+LLL +FVA +++Y Sbjct: 19 VQSVSFGILGAMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQVLIY 78 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF IM+++ + A L G+++ L S ++ + G + Sbjct: 79 VGAINVLILFAIMLVNKRQDFA--AIPSAGLRKIVTGVVSLGLFALLSTMVLATPWGNTT 136 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 N+V IG+ L++ + P E++ +LL++M+GAI+L R Sbjct: 137 TPPATQNSVVVIGEHLFSDFLLPFELASILLLIAMVGAIILARRE 181 >gi|133900396|gb|ABO41364.1| NADH dehydrogenase subunit 6 [Bischofia javanica] Length = 179 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177 >gi|312200058|ref|YP_004020119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp. EuI1c] gi|311231394|gb|ADP84249.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp. EuI1c] Length = 287 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 5/199 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++L F++ + +A+I + +V + ++ L+ A +LL A F+ + +VVY Sbjct: 19 ETLTFWIIAPIAVIGALGMVFAKKAVHGALMLVANLFCVAVCYLLQDAPFLGFVQIVVYT 78 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVF--SAEGE 120 GA++V FLF++M++ ++ + RG + + +G+ A L+V + A G Sbjct: 79 GAIMVLFLFVLMLIGVESSESLVETLRGQRVAAVVLGLGFAGLLVFPLGKAIKNQPAAGV 138 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 G N+ I ++L+TQY + E +L+++ +GA++L R R R + L Sbjct: 139 ADVNQAGGGNIHAIARLLFTQYVFAFEAVSALLVIAAVGAMILSHRERTG-PRPSQKETL 197 Query: 181 ESNPDNSIVMVKVKSGKGI 199 V+ V G G+ Sbjct: 198 RRRIAEGRVLTPV-PGPGV 215 >gi|133900442|gb|ABO41387.1| NADH dehydrogenase subunit 6 [Endospermum moluccanum] Length = 179 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTASLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|255037826|ref|YP_003088447.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter fermentans DSM 18053] gi|254950582|gb|ACT95282.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter fermentans DSM 18053] Length = 172 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 1/167 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FFY SF+ I+S+ +VV RNPI+SV LI F +G ++LL A+F+A + ++ Sbjct: 1 MNSAVSFFYFLSFLTILSAVMVVVSRNPIHSVLYLILTFFTLSGHYILLNAQFLAAVNII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V FLF+IM L++ + E + + + +G ++ A Sbjct: 61 VYAGAIMVLFLFVIMFLNMKQDQEESKTNLTKIAATIVGGTVFVILFGAYRKTAIEPFNP 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + +E++G +L+ Y P E++ +LL++M+GA++L R Sbjct: 121 QTY-DSQIGMIESLGHMLFRDYLLPFELASILLLVAMVGAVLLGKRE 166 >gi|67920417|ref|ZP_00513937.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Crocosphaera watsonii WH 8501] gi|67857901|gb|EAM53140.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Crocosphaera watsonii WH 8501] Length = 236 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 7/167 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + II++ VV + N +YS F L F++ +G+++LL A+FVA +++Y Sbjct: 35 VQIISFAILAGLVIITALGVVLLENIVYSAFLLGGVFISISGIYILLNADFVAAAQVLIY 94 Query: 63 VGAVIVFFLFIIMMLDIDIEVAE---PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VGAV V LF IM+++ + + P +RG G+ A + + ++ Sbjct: 95 VGAVNVLILFAIMLVNKKQDYSSIPTPWIRRGATALVCAGLFA----LLGTMVLITPWSI 150 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 E + N V IGK ++ + P E++ +LL++M+GAIVL R Sbjct: 151 ESNAPGLIENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVLARR 197 >gi|133900516|gb|ABO41424.1| NADH dehydrogenase subunit 6 [Ostodes paniculata] Length = 179 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHKTTRVKRQDVFRRNAIDF 177 >gi|159902716|ref|YP_001550060.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9211] gi|159887892|gb|ABX08106.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9211] Length = 200 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 8/168 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + + I S VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 STEQICFLILGLIVIGGSLGVVLLNNIVYSAFLLGGVFMGVAGLYLLLNASFVAAAQILV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAE---PRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 YVGAV V LF IM+++ E+ R ++ G+L V + +F Sbjct: 66 YVGAVNVLILFAIMLVNKKEELKPIKALRTRKILSAGVCTGLLILLFRVDITTPWIFPGP 125 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + L + E IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 126 NSIGEL-----STERIGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 168 >gi|133900564|gb|ABO41448.1| NADH dehydrogenase subunit 6 [Trigonia nivea] Length = 179 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEIFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|256380656|ref|YP_003104316.1| NADH dehydrogenase subunit J [Actinosynnema mirum DSM 43827] gi|255924959|gb|ACU40470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinosynnema mirum DSM 43827] Length = 277 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 96/205 (46%), Gaps = 13/205 (6%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F++ +A+ + ++ RN ++S L+ ++ GL+++ A F+ + ++V Sbjct: 21 TGEAAAFWVLGPLALAGALGMLFARNAVHSALWLVMTMLSLGGLYMVQQAPFLGFVQIIV 80 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSAE 118 Y GA+++ FLF++M++ D + RG +G + A Sbjct: 81 YTGAIMMLFLFVLMLVGRDSSDSVVEVLRGQRLAAAVLGLGFGGLVVGALARALTEVQPV 140 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM----LRHRRDIKRQ 174 G + G NV NIG ++T Y +P E++ +L+ + +GA+VL +R + +R+ Sbjct: 141 GLVEANTTGGGNVANIGARIFTDYLFPFELTSALLITAAVGAMVLAFTSKIRETKKSQRE 200 Query: 175 DISKQLESNPDNSIVMVKVKSGKGI 199 + ++ + S+ G G+ Sbjct: 201 LVVERFRGDRPGSL------PGPGV 219 >gi|133900572|gb|ABO41452.1| NADH dehydrogenase subunit 6 [Dillenia philippinensis] Length = 179 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFFIPVFCDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNA 174 >gi|257852608|gb|ACV71316.1| NADH dehydrogenase subunit 6 [Hevea sp. Gillespie 4272] gi|257852610|gb|ACV71317.1| NADH dehydrogenase subunit 6 [Hura crepitans] gi|257852614|gb|ACV71319.1| NADH dehydrogenase subunit 6 [Manihot grahamii] Length = 178 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900512|gb|ABO41422.1| NADH dehydrogenase subunit 6 [Neoscortechinia kingii] Length = 179 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900456|gb|ABO41394.1| NADH dehydrogenase subunit 6 [Galearia filiformis] gi|257852660|gb|ACV71342.1| NADH dehydrogenase subunit 6 [Panda oleosa] Length = 178 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTGYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|229328270|ref|YP_002860283.1| NADH dehydrogenase subunit 6 [Megaceros aenigmaticus] gi|186695239|gb|ACC86806.1| NADH dehydrogenase subunit 6 [Nothoceros aenigmaticus] Length = 201 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 11/198 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + S +A++S +NP++SV I F N +GL +LLG + AMI LVVYVGA Sbjct: 2 ILFSVPSSIALVSGVTATRAKNPVHSVLFSIPVFRNTSGLLVLLGLDPFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V + +I I R G IL E+ N + +LS Sbjct: 62 IAVSPSSVATTSNIKIAEIHENVLRYLPVGGITGLILLLEIFFIVDNDYIPILPTKLSTT 121 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + N+E +G +LYT Y S FI L++MIGA VL + +KRQ Sbjct: 122 YLTYTVYAGKIQSWTNLETLGNLLYTTYFTSFLFSSFISLVAMIGATVLTMHRTTRVKRQ 181 Query: 175 DISKQLESNPDNSIVMVK 192 D+ +Q + N+I ++ Sbjct: 182 DVFRQNARDFRNTIKKIR 199 >gi|257852748|gb|ACV71386.1| NADH dehydrogenase subunit 6 [Daphniphyllum macropodum] Length = 178 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 11/176 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYKVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176 >gi|133900478|gb|ABO41405.1| NADH dehydrogenase subunit 6 [Irvingia malayana] gi|133900482|gb|ABO41407.1| NADH dehydrogenase subunit 6 [Klainedoxa gabonensis] Length = 179 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900576|gb|ABO41454.1| NADH dehydrogenase subunit 6 [Tetrastigma obovatum] gi|133900578|gb|ABO41455.1| NADH dehydrogenase subunit 6 [Tetrastigma rumicispermum] gi|133900580|gb|ABO41456.1| NADH dehydrogenase subunit 6 [Tetrastigma voinierianum] Length = 179 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAEKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176 >gi|257852664|gb|ACV71344.1| NADH dehydrogenase subunit 6 [Aporusa frutescens] Length = 178 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI +Q Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRQNA 174 >gi|133900402|gb|ABO41367.1| NADH dehydrogenase subunit 6 [Byrsonima crassifolia] Length = 179 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900496|gb|ABO41414.1| NADH dehydrogenase subunit 6 [Maprounea guianensis] Length = 179 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFXDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTGVKRQDIFRRNAIDF 177 >gi|257852704|gb|ACV71364.1| NADH dehydrogenase subunit 6 [Cephalotus follicularis] gi|257852706|gb|ACV71365.1| NADH dehydrogenase subunit 6 [Rourea minor] gi|257852710|gb|ACV71367.1| NADH dehydrogenase subunit 6 [Crinodendron hookerianum] gi|257852712|gb|ACV71368.1| NADH dehydrogenase subunit 6 [Sloanea berteroana] gi|257853521|gb|ACV71763.1| NADH dehydrogenase subunit 6 [Averrhoa carambola] Length = 178 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177 >gi|133900568|gb|ABO41450.1| NADH dehydrogenase subunit 6 [Vantanea guianensis] Length = 178 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|118465874|ref|YP_883194.1| NADH dehydrogenase subunit J [Mycobacterium avium 104] gi|254776464|ref|ZP_05217980.1| NADH dehydrogenase subunit J [Mycobacterium avium subsp. avium ATCC 25291] gi|118167161|gb|ABK68058.1| NADH dehydrogenase subunit j [Mycobacterium avium 104] Length = 274 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 91/183 (49%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + VV N +YS L + A +++ A F+ ++ +VV Sbjct: 27 TGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVV 86 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + + +++ A+ V S Sbjct: 87 YTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVAAGVGFGILLIAAVGNVASGGFAG 146 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NVE + +++++Y + E++ +L+ + +GA+VL R R +R+ ++L Sbjct: 147 LTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER--FERRKTQRELS 204 Query: 182 SNP 184 Sbjct: 205 QER 207 >gi|56791564|gb|AAW30320.1| NADH dehydrogenase subunit 6 [Berberis bealei] Length = 179 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 11/179 (6%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 S A++S +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V F Sbjct: 1 LSSPALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSF 60 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----- 124 LF++MM I I R S IG IL E+ N + + Sbjct: 61 LFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYT 120 Query: 125 -----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ + Sbjct: 121 VHAGKIRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFR 179 >gi|133900390|gb|ABO41361.1| NADH dehydrogenase subunit 6 [Balanops vieillardii] Length = 179 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLEALGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900388|gb|ABO41360.1| NADH dehydrogenase subunit 6 [Austrobuxus megacarpus] Length = 179 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I R S IG++ E+ N + + + V Sbjct: 61 IKKAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|319787434|ref|YP_004146909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudoxanthomonas suwonensis 11-1] gi|317465946|gb|ADV27678.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudoxanthomonas suwonensis 11-1] Length = 215 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 4/179 (2%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 ++VRNP+ +V LI F + A +LL+GAEF+ + ++VYVGAV+V FLF++MMLDID+ Sbjct: 23 ISVRNPVNAVLCLILTFFSVACTWLLVGAEFLGVALILVYVGAVMVLFLFVVMMLDIDVA 82 Query: 83 VAEPRKKRG----FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 R + + + + LI + + L +N + + L Sbjct: 83 ALREGWVRFLPVGVVVAVVMLVQVLALIGVKARTATPFPADNAAALAADASNTRWLAETL 142 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 +TQY P E + IL +++I A+++ LR R IK Q+ ++Q + + MV + + K Sbjct: 143 FTQYLLPFEFAAVILTVAVIAAVMITLRKRTGIKTQNPAEQSRVKAADRLRMVSMPAEK 201 >gi|58584882|ref|YP_198455.1| NADH:ubiquinone oxidoreductase chain J [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419198|gb|AAW71213.1| NADH:ubiquinone oxidoreductase chain J [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 177 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 120/180 (66%), Gaps = 8/180 (4%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 +++VRNP+++V LIF FV++ LF+LLGAEF+AM+ L+VY+GAV V FLF++MMLDID Sbjct: 1 MISVRNPVHAVLFLIFTFVSSTVLFILLGAEFIAMMVLIVYIGAVAVLFLFVVMMLDIDY 60 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-FKGNNVENIGKVLYT 140 R +GF F I+ + +F++ S+ +S ++ + NNV+ IG +LYT Sbjct: 61 ----IRIHQGFAKHFTFSIILCVVFFLVISFVICSSVLNISSVIDYNANNVKAIGDLLYT 116 Query: 141 QYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 Y Y +SG +LL++++GAI L L+ ++ IKRQ++ KQL +S+ +VK K GKG+ Sbjct: 117 DYMYAFHLSGILLLVAIVGAIALTLQDKKKGIKRQNVLKQL--TQSSSVKLVKAKFGKGV 174 >gi|133900488|gb|ABO41410.1| NADH dehydrogenase subunit 6 [Linum arboreum] gi|133900544|gb|ABO41438.1| NADH dehydrogenase subunit 6 [Reinwardtia indica] Length = 179 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|298489903|ref|YP_003720080.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 ['Nostoc azollae' 0708] gi|298231821|gb|ADI62957.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ['Nostoc azollae' 0708] Length = 205 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 4/198 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + M I ++ VV N +YS F L F++ AGL+LLL +FVA +++Y Sbjct: 7 VQVISFGILGVMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF IM+++ + + L +++ L S +V + S Sbjct: 67 VGAINVLILFAIMLVNKRQDFSP--LPSAGLRKIITSLVSIGLFGLLSTMVVATPWAYSS 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQL 180 V +++ IG+ +T + P E++ +LL++M+GAI+L R ++ D+ + + Sbjct: 125 VPVAGESSIVLIGEHFFTDFLLPFELASILLLMAMVGAIILARREYLPDEVPSSDMPQTI 184 Query: 181 ESNPDNSIVMVKVKSGKG 198 + P+ +V SG G Sbjct: 185 LTLPERPRELVSTGSGAG 202 >gi|133900430|gb|ABO41381.1| NADH dehydrogenase subunit 6 [Dicella nucifera] gi|133900494|gb|ABO41413.1| NADH dehydrogenase subunit 6 [Malpighia stevensii] gi|133900560|gb|ABO41446.1| NADH dehydrogenase subunit 6 [Thryallis longifolia] Length = 179 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900426|gb|ABO41379.1| NADH dehydrogenase subunit 6 [Ctenolophon englerianus] Length = 179 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|41409308|ref|NP_962144.1| NADH dehydrogenase subunit J [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398128|gb|AAS05758.1| NuoJ [Mycobacterium avium subsp. paratuberculosis K-10] Length = 274 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 91/183 (49%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + VV N +YS L + A +++ A F+ ++ +VV Sbjct: 27 TGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVV 86 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + + +++ A+ V S Sbjct: 87 YTGAVMMLFLFVLMLIGVDSAESLRETLRGQRVAAVAAGVGFGILLIAAVGNVASGGFAG 146 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NVE + +++++Y + E++ +L+ + +GA+VL R R +R+ ++L Sbjct: 147 LTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER--FERRKTQRELS 204 Query: 182 SNP 184 Sbjct: 205 QER 207 >gi|300113274|ref|YP_003759849.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Nitrosococcus watsonii C-113] gi|299539211|gb|ADJ27528.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus watsonii C-113] Length = 201 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 63/197 (31%), Positives = 114/197 (57%), Gaps = 3/197 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+F+ + + ++ +VVTVRNP+ + L+ AF +A ++LLL AEF+A++ ++VY Sbjct: 1 MEKTLFYIFAAILLFAATMVVTVRNPVRAALFLVLAFFTSAAIWLLLEAEFLAIVLVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +GAV+V FLF++MMLD+++ + R + +L A ++ F + Sbjct: 61 IGAVMVLFLFVVMMLDMNLAPLQEGFARYLPVGLLVAVLIAIEMIMVLGSKNFGLDQFTV 120 Query: 123 RLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + NN + +G +LYT Y YP E++ ILL++++ A + + RR K QD +Q+ Sbjct: 121 PVARGADYNNTKELGNLLYTVYVYPFELASVILLVAIV-AAIALALRRRPSKTQDPVQQV 179 Query: 181 ESNPDNSIVMVKVKSGK 197 P + + +VK+ + K Sbjct: 180 RVRPQDRVRLVKMTAEK 196 >gi|291280348|ref|YP_003497183.1| NADH-quinone oxidoreductase subunit J [Deferribacter desulfuricans SSM1] gi|290755050|dbj|BAI81427.1| NADH-quinone oxidoreductase, J subunit [Deferribacter desulfuricans SSM1] Length = 166 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 99/166 (59%), Gaps = 1/166 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+ +F+AI+S+ ++T NP++S ++ F + AG+F+ L AEF+A I ++VY Sbjct: 1 MEQVAFYILAFLAIVSALFMITRTNPVHSALWMLLTFFSVAGIFVQLDAEFIAAIQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +LF++M+L+ R +G+ I+ + ++ V +G+++ Sbjct: 61 AGAILVLYLFVVMLLNPKSHGFIKIPFRYAIGTVVSIIIVIQTLIAVKTTDVLGQKGDIT 120 Query: 123 RLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V + NV+ GK L+T + P EI+ +LL++MIGAIVL + Sbjct: 121 DTVISQYGNVKLFGKALFTDFLVPFEIASILLLVAMIGAIVLARKE 166 >gi|133900422|gb|ABO41377.1| NADH dehydrogenase subunit 6 [Clutia myricoides] gi|133900470|gb|ABO41401.1| NADH dehydrogenase subunit 6 [Humiria balsamifera] Length = 179 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852598|gb|ACV71311.1| NADH dehydrogenase subunit 6 [Acalypha californica] Length = 178 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDF 177 >gi|133900424|gb|ABO41378.1| NADH dehydrogenase subunit 6 [Croton alabamensis var. alabamensis] Length = 179 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDEETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRRNAIDF 177 >gi|257852624|gb|ACV71324.1| NADH dehydrogenase subunit 6 [Suregada glomerulata] Length = 178 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GVMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852740|gb|ACV71382.1| NADH dehydrogenase subunit 6 [Vitis aestivalis] Length = 178 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAEKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176 >gi|133900460|gb|ABO41396.1| NADH dehydrogenase subunit 6 [Goupia glabra] Length = 179 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852670|gb|ACV71347.1| NADH dehydrogenase subunit 6 [Lachnostylis bilocularis] Length = 178 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTHRNTTSMRYTVYAVKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHKTKKVKRQDIFRRNAIDF 177 >gi|239811642|gb|ACS27129.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo] gi|239811682|gb|ACS27168.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo] gi|288871938|dbj|BAI70624.1| NADH dehydrogenase subunit 6 [Heterosigma akashiwo] Length = 204 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 11/198 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + FFYLF+ + +IS+F+ +TV NP++SV LI FV +A + LL+ EF++++ +++YV Sbjct: 3 EFTFFYLFAGLILISAFMTITVSNPVHSVLFLILVFVGSAAVLLLMEVEFLSLMFIIIYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+ V FLF++MMLDI + + R F+G L VF+ + + S Sbjct: 63 GAIAVLFLFVVMMLDIKLSSSNNNYLRYLSIGGFLGFLFFVETYYLVETSVFAPQVDSSL 122 Query: 124 LVFKG-----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 ++ N+E +G+ LYT Y + I+G +LL+ MIGAIVL L K Sbjct: 123 VLESSYQDWITRLDTLTNMECLGQFLYTYYFFHFLIAGIVLLVGMIGAIVLTLHVNHTSK 182 Query: 173 RQDISKQLESNPDNSIVM 190 Q I KQL N+ + Sbjct: 183 NQLICKQLSRQVKNATFL 200 >gi|133900382|gb|ABO41357.1| NADH dehydrogenase subunit 6 [Androstachys johnsonii] gi|133900434|gb|ABO41383.1| NADH dehydrogenase subunit 6 [Dissiliaria muelleri] gi|133900506|gb|ABO41419.1| NADH dehydrogenase subunit 6 [Micrantheum hexandrum] Length = 179 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852708|gb|ACV71366.1| NADH dehydrogenase subunit 6 [Eucryphia milliganii] Length = 178 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPIPVFRETSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177 >gi|133900468|gb|ABO41400.1| NADH dehydrogenase subunit 6 [Hugonia platysepala] Length = 179 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852616|gb|ACV71320.1| NADH dehydrogenase subunit 6 [Moultonianthus leembruggianus] Length = 178 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|271962164|ref|YP_003336360.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein [Streptosporangium roseum DSM 43021] gi|270505339|gb|ACZ83617.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein [Streptosporangium roseum DSM 43021] Length = 270 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 94/171 (54%), Gaps = 2/171 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +++ ++ +V R +YS L ++ A L+ + A F+A + ++VY Sbjct: 3 ETITFWVLAVVSVSAALGLVFSRKAVYSALMLGVVMLSLAVLYAVQDAPFLAAVQIIVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVA--EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV++ FLF++M++ +D + E K + F + AA L + A N + A+G Sbjct: 63 GAVMMLFLFVLMLVGVDSADSLVETIKGQRFWATIAGLGFAALLALGAGNMVFAPAKGVG 122 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + G NV + ++++T++ + E++ +L+ + +GA+VL R R K Sbjct: 123 GAVQEAGGNVPALAQLIFTRHVFAFEVTSALLITAALGAMVLAHRERVRPK 173 >gi|124024944|ref|YP_001014060.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. NATL1A] gi|123960012|gb|ABM74795.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. NATL1A] Length = 200 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + S + + S VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 STELICFLILSAIIVSGSLAVVLLENIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQILV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++ + R G + L++ + + Sbjct: 66 YVGAVNVLILFAIMLVNNKEKLKPIKGLRT--RKLISGGVCGGLLILLLRVSITTKWNLP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 E IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 GPTSIGEEATEIIGEHLFTDYLLPFELASILLLMAMIGAIVLARR 168 >gi|133900380|gb|ABO41356.1| NADH dehydrogenase subunit 6 [Acridocarpus natalitius] Length = 179 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 ALMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852612|gb|ACV71318.1| NADH dehydrogenase subunit 6 [Lasiocroton bahamensis] gi|257852622|gb|ACV71323.1| NADH dehydrogenase subunit 6 [Spathiostemon javensis] Length = 178 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDF 177 >gi|257852602|gb|ACV71313.1| NADH dehydrogenase subunit 6 [Conceveiba martiana] Length = 178 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNA 174 >gi|194476796|ref|YP_002048975.1| NADH dehydrogenase subunit J [Paulinella chromatophora] gi|221272340|sp|B1X496|NU6C_PAUCH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, organellar chromatophore; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|171191803|gb|ACB42765.1| NADH dehydrogenase subunit J [Paulinella chromatophora] Length = 205 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 2/169 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F+ S I+ + VV + N +YS F L F++ AGL+LLL A FVA +++YV Sbjct: 8 QLICFFALSATLILGALGVVLLPNIVYSAFLLGSVFLSVAGLYLLLNASFVAAAQVLIYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV V LF IM+++ + E+ + FF G++ L+V + ++ Sbjct: 68 GAVNVLILFAIMLVNREEELK--VIPGLAIRRFFSGVVCMGLLVILERIATTTHWAQVGP 125 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + IG+ L++ Y P E++ +LL++MIGAIVL + D+K Sbjct: 126 IPLGEEATIRIGEHLFSDYLLPFELASILLLIAMIGAIVLARKDLVDLK 174 >gi|257852630|gb|ACV71327.1| NADH dehydrogenase subunit 6 [Sacoglottis gabonensis] Length = 178 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|282900718|ref|ZP_06308660.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Cylindrospermopsis raciborskii CS-505] gi|281194518|gb|EFA69473.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Cylindrospermopsis raciborskii CS-505] Length = 202 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 54/197 (27%), Positives = 100/197 (50%), Gaps = 4/197 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +QS+ F + M I ++ VV N +YS F L F++ AGL+LLL +FVA +++Y Sbjct: 7 VQSVSFGILGAMMIGAALGVVLFSNIVYSAFLLGGVFISMAGLYLLLNGDFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF IM+++ + A L G+++ L S ++ + G + Sbjct: 67 VGAINVLILFAIMLVNKRQDFA--VIPSAGLRKIVTGVVSLGLFALLSAMVLATPWGNTT 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQL 180 N+V IG+ L++ + P E++ +LL++M+GAI+L R + ++ + + Sbjct: 125 TPPATQNSVVVIGEHLFSDFLLPFELASILLLIAMVGAIILARREYLPDQVTPSELPQTI 184 Query: 181 ESNPDNSIVMVKVKSGK 197 + P+ +V + Sbjct: 185 LTLPERPRELVSTTGNQ 201 >gi|133900574|gb|ABO41453.1| NADH dehydrogenase subunit 6 [Leea guineensis] Length = 179 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVSRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAEKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTQVKRQDIFRRNAIDF 177 >gi|120402874|ref|YP_952703.1| NADH dehydrogenase subunit J [Mycobacterium vanbaalenii PYR-1] gi|119955692|gb|ABM12697.1| NADH dehydrogenase subunit J [Mycobacterium vanbaalenii PYR-1] Length = 241 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 95/181 (52%), Gaps = 2/181 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++F+ +++ + VV +YS SL + A L++ A F+ ++ +VVY Sbjct: 3 EAVLFWVFAVVSVTGALGVVAAPKAVYSAISLATTMIALAVLYIAQDAPFLGVVQIVVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF++M++ +D + RG + + L +++ A V + Sbjct: 63 GAVMMLFLFVLMLIGVDSSESLVETLRGQRVAAIVVGLGFGVLLVAGVGNVSATGFVGLD 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + NVE + +++T+Y + E++G +L+ + +GA+VL R R +R+ ++L + Sbjct: 123 QANEDGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRER--FERRKTQRELAAE 180 Query: 184 P 184 Sbjct: 181 R 181 >gi|257852734|gb|ACV71379.1| NADH dehydrogenase subunit 6 [Heterostemon otophorus] Length = 178 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIYEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSIILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177 >gi|257852650|gb|ACV71337.1| NADH dehydrogenase subunit 6 [Lophopyxis maingayi] Length = 178 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYMVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTKRVKRQDIFRRNAIDF 177 >gi|133900432|gb|ABO41382.1| NADH dehydrogenase subunit 6 [Dichapetalum macrocarpum] Length = 179 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|257852582|gb|ACV71303.1| NADH dehydrogenase subunit 6 [Centroplacus glaucinus] Length = 178 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|257852746|gb|ACV71385.1| NADH dehydrogenase subunit 6 [Soyauxia floribunda] Length = 178 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 11/176 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVFRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176 >gi|257852692|gb|ACV71358.1| NADH dehydrogenase subunit 6 [Trigoniastrum hypoleucum] Length = 178 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +K+QDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKKQDIFRRNAIDF 177 >gi|257852580|gb|ACV71302.1| NADH dehydrogenase subunit 6 [Bhesa robusta] Length = 178 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++M+GAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMMGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|133900524|gb|ABO41428.1| NADH dehydrogenase subunit 6 [Petalostigma pubescens] Length = 179 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRRNAIDF 177 >gi|315445438|ref|YP_004078317.1| NADH dehydrogenase subunit J [Mycobacterium sp. Spyr1] gi|315263741|gb|ADU00483.1| NADH dehydrogenase subunit J [Mycobacterium sp. Spyr1] Length = 239 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 93/181 (51%), Gaps = 2/181 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +++ + V+ +YS SL + A L++ GA F+ ++ +VVY Sbjct: 3 ETILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF++MM+ +D + RG + L +++ A V + Sbjct: 63 GAVMMLFLFVLMMIGVDSSESLVETLRGQRIAALAVGLGFGILLIAGIGSVSATGIVGLD 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 G NVE + +++T+Y + E++G +L+ + +GA+VL R R +R+ ++L Sbjct: 123 QANGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRER--FQRRKTQRELAVE 180 Query: 184 P 184 Sbjct: 181 R 181 >gi|257852648|gb|ACV71336.1| NADH dehydrogenase subunit 6 [Durandea pentagyna] Length = 178 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852674|gb|ACV71349.1| NADH dehydrogenase subunit 6 [Tetracoccus dioicus] Length = 178 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852646|gb|ACV71335.1| NADH dehydrogenase subunit 6 [Lozania pittieri] Length = 178 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177 >gi|296169181|ref|ZP_06850835.1| NADH-quinone oxidoreductase subunit J [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896160|gb|EFG75826.1| NADH-quinone oxidoreductase subunit J [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 278 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 90/183 (49%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A++ + VV N +YS L + A +++ A F+ ++ +VV Sbjct: 31 TGEAVAFWVLGALALVGAIGVVLSVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVV 90 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + G + + + +++ A+ + Sbjct: 91 YTGAVMMLFLFVLMLIGVDSAESLKETLHGQRIAAVLAGVGFGVLLIAAIGSGATGGFAG 150 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NVE + +++++Y + E++ +L+ + IGA+VL R R +R+ ++L Sbjct: 151 LTAANANGNVEGLAALIFSRYVWAFELTSALLITAAIGAMVLAHRER--FERRKTQRELS 208 Query: 182 SNP 184 Sbjct: 209 QER 211 >gi|313768501|ref|YP_004062177.1| NADH dehydrogenase subunit 6 [Gracilariophila oryzoides] gi|312844628|gb|ADR03193.1| NADH dehydrogenase subunit 6 [Gracilariophila oryzoides] Length = 202 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 7/201 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + LFS I+SS +V+++ N ++S+ LI F N AGL LLLGAEF++ + L+ Sbjct: 1 MYTDLFLYLLFSSFTIVSSLMVISLSNAVHSILFLILVFCNVAGLLLLLGAEFLSFMLLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGA+ V FLF++MML++ G +G IL+ +L+ ++F F + Sbjct: 61 VYVGAIAVLFLFVVMMLNVKKTSTNLGFFAIGPVGLITFFILSNQLLGVFNDFDTFGLKQ 120 Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 N++ +GKVLYT+Y++ +SG ILL++M+GAIVL + R D+K+ Sbjct: 121 KDLIWISWITEHNNITNIQAVGKVLYTKYSFLFILSGLILLVAMLGAIVLTMHQRTDVKK 180 Query: 174 QDISKQLESNPDNSIVMVKVK 194 Q I QL N SI + ++ Sbjct: 181 QRIELQLSRNFGGSIKFINLR 201 >gi|257852644|gb|ACV71334.1| NADH dehydrogenase subunit 6 [Lacistema aggregatum] Length = 178 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 11/176 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ V FLF++MM + Sbjct: 1 GLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVVMMFN 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176 >gi|257852638|gb|ACV71331.1| NADH dehydrogenase subunit 6 [Cyrillopsis paraensis] Length = 178 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|302536177|ref|ZP_07288519.1| NADH dehydrogenase subunit J [Streptomyces sp. C] gi|302445072|gb|EFL16888.1| NADH dehydrogenase subunit J [Streptomyces sp. C] Length = 270 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 85/167 (50%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ +A+I + + ++ ++S L + A +L GA F+ ++ +VVY Sbjct: 15 EAVQFWVLGTVAVIGALCTILMKKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQVVVYT 74 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ FLF++M++ + + +G + L +++ A Sbjct: 75 GAIMMLFLFVVMLVGVTAADSLKETIKGQRWLAALCGLGFGILLIAGIGNAGLTHFNGLG 134 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 V +VE + ++++T+Y + EI+G +L+ + +GA+VL R R + Sbjct: 135 KVNSAGHVEGLAELIFTRYIFAFEITGALLITAAVGAMVLTHRERTE 181 >gi|56791582|gb|AAW30329.1| NADH dehydrogenase subunit 6 [Lonicera sp. Bergthorsson 0301] Length = 178 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 11/178 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S +A++S +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V Sbjct: 1 VLSSLALVSGLMVVRAKNPVHSVSFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVS 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124 FLF++MM I I R S IG I E+ N + + + Sbjct: 61 FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRY 120 Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ Sbjct: 121 MVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDV 178 >gi|254819281|ref|ZP_05224282.1| NADH dehydrogenase subunit J [Mycobacterium intracellulare ATCC 13950] Length = 274 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 91/183 (49%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + VV N +YS L + A +++ A F+ ++ +VV Sbjct: 27 TGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVV 86 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + + +++ A+ V + Sbjct: 87 YTGAVMMLFLFVLMLIGVDSAESLRETLRGQRVAAVAAGVGFGILLIAAIGDVATGGFAG 146 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NVE + +++++Y + E++ +L+ + +GA+VL R R +R+ ++L Sbjct: 147 LTTANAAGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER--FERRKTQRELS 204 Query: 182 SNP 184 Sbjct: 205 QER 207 >gi|133900394|gb|ABO41363.1| NADH dehydrogenase subunit 6 [Bernardia incana] Length = 179 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G ++YT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLIYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTRVKRQDLFRRNAIDF 177 >gi|133900440|gb|ABO41386.1| NADH dehydrogenase subunit 6 [Elatine triandra] Length = 179 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852744|gb|ACV71384.1| NADH dehydrogenase subunit 6 [Peridiscus lucidus] Length = 178 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 90/174 (51%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + +++ V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLQTQINTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNA 174 >gi|133900558|gb|ABO41445.1| NADH dehydrogenase subunit 6 [Tapura guianensis] Length = 179 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDF 177 >gi|133900492|gb|ABO41412.1| NADH dehydrogenase subunit 6 [Malesherbia linearifolia] Length = 179 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDIFRRNAIDF 177 >gi|133900386|gb|ABO41359.1| NADH dehydrogenase subunit 6 [Atuna racemosa] gi|133900418|gb|ABO41375.1| NADH dehydrogenase subunit 6 [Chrysobalanus icaco] gi|133900464|gb|ABO41398.1| NADH dehydrogenase subunit 6 [Hirtella bicornis] Length = 179 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900392|gb|ABO41362.1| NADH dehydrogenase subunit 6 [Bergia texana] Length = 179 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900532|gb|ABO41432.1| NADH dehydrogenase subunit 6 [Pogonophora schomburgkiana] Length = 179 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRKTTPLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDF 177 >gi|226365389|ref|YP_002783172.1| NADH dehydrogenase subunit J [Rhodococcus opacus B4] gi|226243879|dbj|BAH54227.1| NADH-quinone oxidoreductase chain J [Rhodococcus opacus B4] Length = 272 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 88/188 (46%), Gaps = 1/188 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F++ + +A+I + VV+ +YS L + A ++ GA F+ ++ +VV Sbjct: 20 TGEGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIAQGAPFLGVVQIVV 79 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + L L++ + Sbjct: 80 YTGAVMMLFLFVLMLIGVDSSESLVENLRGQRVAAIAAGLGFGLLLIGGFGRASVSAFTG 139 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQL 180 G NV+ + ++++ +Y + E++G +L+ + IGA+VL R R K Q Q Sbjct: 140 LDQANAGGNVQGLAELVFVRYVWAFELTGALLITATIGAMVLAHRERFERRKDQRELSQD 199 Query: 181 ESNPDNSI 188 + Sbjct: 200 RVREGARV 207 >gi|133900504|gb|ABO41418.1| NADH dehydrogenase subunit 6 [Mesua sp. Coode 7884] Length = 179 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|126659018|ref|ZP_01730159.1| NADH dehydrogenase subunit J [Cyanothece sp. CCY0110] gi|126619675|gb|EAZ90403.1| NADH dehydrogenase subunit J [Cyanothece sp. CCY0110] Length = 208 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 1/164 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + II++ VV + N +YS F L F++ +G+++LL A+FVA +++Y Sbjct: 7 VQVISFAILAALVIIAALGVVLLENIVYSAFLLGGVFISISGIYILLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + + R S + + A+ ++ E + Sbjct: 67 VGAVNVLILFAIMLVNKKQDYSN-LPGRWLKRSATALVCGGLFALLATMVLITPWSLETN 125 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 N V IGK ++ + P E++ +LL++M+GAIVL R Sbjct: 126 APGLIENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVLARR 169 >gi|257852738|gb|ACV71381.1| NADH dehydrogenase subunit 6 [Fagus grandifolia] Length = 178 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 11/178 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDFK 178 >gi|11465629|ref|NP_049300.1| NADH dehydrogenase subunit 6 [Porphyra purpurea] gi|4106936|gb|AAD03103.1| NADH dehydrogenase subunit 6 [Porphyra purpurea] Length = 209 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 69/204 (33%), Positives = 112/204 (54%), Gaps = 14/204 (6%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F++FS ++++S+ LVV++ N +YSV LI F N A + LLLGAEF++ + L+VYVGA+ Sbjct: 6 LFWIFSIISLLSACLVVSLANAVYSVLFLIIVFCNTASILLLLGAEFLSFLFLIVYVGAI 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114 V FLF++MML++ I+ A+ L F I + A + Sbjct: 66 AVLFLFVVMMLNVKIDGAKVNYTTILLIGFLISSILLFQFSSAMQIDLDAYSNIRLNLTE 125 Query: 115 --FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 F ++ +NVE+IG VLYT Y+ + FILLL+MIG+I+L + R +K Sbjct: 126 VNFPTTTLWTQENSLPSNVESIGLVLYTSYSLVFILCAFILLLAMIGSIILTMNQRNGVK 185 Query: 173 RQDISKQLESNPDNSIVMVKVKSG 196 +Q I+ QL + + + + ++ Sbjct: 186 KQQITLQLHRDQNKVVRFLDLRKN 209 >gi|133900384|gb|ABO41358.1| NADH dehydrogenase subunit 6 [Archytaea triflora] Length = 179 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900566|gb|ABO41449.1| NADH dehydrogenase subunit 6 [Turnera ulmifolia] Length = 178 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRRNA 174 >gi|133900508|gb|ABO41420.1| NADH dehydrogenase subunit 6 [Microdesmis puberula] Length = 179 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTSQVKRQDVFRRNAIDF 177 >gi|133900570|gb|ABO41451.1| NADH dehydrogenase subunit 6 [Vismia sp. Miller et al. 9313] Length = 179 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI LVV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFLVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|257852728|gb|ACV71376.1| NADH dehydrogenase subunit 6 [Guaiacum sanctum] Length = 178 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNA 174 >gi|133900458|gb|ABO41395.1| NADH dehydrogenase subunit 6 [Garcinia hessii] Length = 179 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852642|gb|ACV71333.1| NADH dehydrogenase subunit 6 [Ochthocosmus longipedicellatus] Length = 178 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 11/176 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAID 176 >gi|313768527|ref|YP_004062202.1| NADH dehydrogenase subunit 6 [Gracilariopsis andersonii] gi|312844654|gb|ADR03218.1| NADH dehydrogenase subunit 6 [Gracilariopsis andersonii] Length = 202 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 74/201 (36%), Positives = 114/201 (56%), Gaps = 7/201 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + LFS AI++S +V+++ N ++SV LI F N AGL LLLGAEF++ + L+ Sbjct: 1 MYTDLFLYLLFSSFAILASLMVISLSNAVHSVLFLILVFCNVAGLLLLLGAEFLSFMLLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGA+ V FLF++MML++ G +G IL +L+ ++F F + Sbjct: 61 VYVGAIAVLFLFVVMMLNVKKTSTNLGFFAIGPIGLITFFILINQLLGIFNDFDTFGLKQ 120 Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 N++ +GKVLYT+Y++ +SG ILL++M+GAIVL + R D+K+ Sbjct: 121 KDLIWISWITEHNNLTNIQAVGKVLYTKYSFLFILSGLILLVAMLGAIVLTMHQRTDVKK 180 Query: 174 QDISKQLESNPDNSIVMVKVK 194 Q I QL N SI + ++ Sbjct: 181 QKIELQLNRNFGGSIKFINLR 201 >gi|257852576|gb|ACV71300.1| NADH dehydrogenase subunit 6 [Ploiarium alternifolium] Length = 178 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852584|gb|ACV71304.1| NADH dehydrogenase subunit 6 [Licania michauxii] Length = 178 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852632|gb|ACV71328.1| NADH dehydrogenase subunit 6 [Cratoxylum formosum] Length = 178 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNNIDF 177 >gi|226939465|ref|YP_002794538.1| NuoJ [Laribacter hongkongensis HLHK9] gi|226714391|gb|ACO73529.1| NuoJ [Laribacter hongkongensis HLHK9] Length = 211 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 69/203 (33%), Positives = 122/203 (60%), Gaps = 10/203 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + FY S + + + V+T +NP+++V L+ AF +AG +LL+ AEF+A+ ++ Sbjct: 1 MSFQLILFYALSVLLVYAGLRVITAKNPVHAVLHLVLAFFVSAGHWLLIEAEFLAIALVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI+ E + + GF L A +++ +++ S Sbjct: 61 VYVGAVMVLFLFVVMMLDINFE----KLREGFWKHLPFAGLVAVVLIAELAYVLTSPAAG 116 Query: 121 LSR------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 LS L +NV+++G+ +YT Y YP E++ +LLL+++ AI L R+R+D K Sbjct: 117 LSDMPSPAALAADYSNVKDLGRQIYTVYLYPFELAAVLLLLAIVAAIALTQRNRKDTKWV 176 Query: 175 DISKQLESNPDNSIVMVKVKSGK 197 D + Q+ + ++ + +VK+++ K Sbjct: 177 DPAVQVMARREDRVRIVKMQAVK 199 >gi|257852604|gb|ACV71314.1| NADH dehydrogenase subunit 6 [Dalechampia spathulata] Length = 178 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ++ ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTRVKRQELFRRNA 174 >gi|254382433|ref|ZP_04997792.1| NADH dehydrogenase subunit J [Streptomyces sp. Mg1] gi|194341337|gb|EDX22303.1| NADH dehydrogenase subunit J [Streptomyces sp. Mg1] Length = 270 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 89/183 (48%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + + ++ ++S SL + A +L GA F+ ++ ++V Sbjct: 13 TGEAVQFWVLGTVAVIGALSTILMKKAVHSALSLAGTMIILAVFYLANGAYFLGVVQVIV 72 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ + + +G + L ++ A Sbjct: 73 YTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWMAVLCALGFGTLLIAGIAHARLNHFNG 132 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + G +VE + +++T+Y + EI+G +L+ + +GA+VL R R + R ++L Sbjct: 133 LGRINSGGHVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTE--RAATQRELA 190 Query: 182 SNP 184 Sbjct: 191 ERR 193 >gi|317134163|ref|YP_004123416.1| NADH dehydrogenase subunit 6 [Corticium candelabrum] gi|308912772|gb|ADO51527.1| NADH dehydrogenase subunit 6 [Corticium candelabrum] Length = 197 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY ++S +V++ NPI+SVF LI F A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 4 LFYAIVLAVLVSGIMVISALNPIHSVFWLIAVFGGASALFILLNIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE------- 118 + FLF+IMML++ D+E A +GS L E+ + +V+S Sbjct: 64 AILFLFVIMMLNLTDLESAGDMSNYIPIGSVMGVFLLFEIFIVGREAIVYSNRDTDYENL 123 Query: 119 ------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 ++S + +N+E +G++LY Y Y ++ FILL++MIGAIVL ++K Sbjct: 124 IDVLDFWDVSIEIINFSNIEALGRILYIDYFYSFLLASFILLVAMIGAIVLTHELGIELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q Sbjct: 184 RQDLFIQTSRK 194 >gi|254416218|ref|ZP_05029972.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Microcoleus chthonoplastes PCC 7420] gi|196176900|gb|EDX71910.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Microcoleus chthonoplastes PCC 7420] Length = 208 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 1/164 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + S M I S+ VV + N +YS F L F++ AG +LLL A+FVA ++VY Sbjct: 7 VQFVSFVILSVMMIGSALGVVLLNNIVYSAFLLGGVFISMAGFYLLLNADFVAAAQILVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ E +P R + + + +V Sbjct: 67 VGAVNVLILFAIMLVN-KREDFKPITNRWIRQGATALVCLGLFALLGTMVLVTPWSIYSG 125 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 V +V IGK ++ + P E++ +LL++M+GAI+L R Sbjct: 126 TAVLGEGSVVEIGKHFFSDFLLPFELASVLLLMAMVGAIILARR 169 >gi|133900444|gb|ABO41388.1| NADH dehydrogenase subunit 6 [Erythrococca sp. Cheek s.n.] Length = 179 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNA 174 >gi|108798541|ref|YP_638738.1| NADH dehydrogenase subunit J [Mycobacterium sp. MCS] gi|119867641|ref|YP_937593.1| NADH dehydrogenase subunit J [Mycobacterium sp. KMS] gi|126434139|ref|YP_001069830.1| NADH dehydrogenase subunit J [Mycobacterium sp. JLS] gi|108768960|gb|ABG07682.1| NADH dehydrogenase subunit J [Mycobacterium sp. MCS] gi|119693730|gb|ABL90803.1| NADH dehydrogenase subunit J [Mycobacterium sp. KMS] gi|126233939|gb|ABN97339.1| NADH dehydrogenase subunit J [Mycobacterium sp. JLS] Length = 249 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 91/181 (50%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + VV+ +YS L + A L++ A F+ ++ +VV Sbjct: 13 TSEAVVFWILGGIALIGALGVVSAPKAVYSAIFLATTMIALAVLYIAQEALFLGVVQIVV 72 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + + +++ A V ++ Sbjct: 73 YTGAVMMLFLFVLMLVGVDNSESLVETIRGQRVAAIAVGVGFGVLLIAGIGTVSTSGFTG 132 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NVE + +++T+Y + E++G +L+ + +GA+VL R R + ++ +E Sbjct: 133 LPDANSSGNVEGLAALIFTRYLWAFELTGALLITAALGAMVLAHRERFEHRKTQRELSIE 192 Query: 182 S 182 Sbjct: 193 R 193 >gi|257852730|gb|ACV71377.1| NADH dehydrogenase subunit 6 [Krameria lanceolata] Length = 178 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTXVKRQDVFRRNA 174 >gi|6137794|ref|NP_009264.1| NADH dehydrogenase subunit 6 [Metridium senile] gi|3914175|sp|O47498|NU6M_METSE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|913914|gb|AAB32500.1| NADH dehydrogenase complex subunit 6 [Metridium senile] gi|2920996|gb|AAC04641.1| NADH dehydrogenase subunit 6 [Metridium senile] Length = 202 Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 107/199 (53%), Gaps = 19/199 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +++F+ SF + S +V++ NP++SVF L+ AF+++A LF+LLG +F+A++ +++Y Sbjct: 1 MVTMYFFTLSFGTVASGIMVISALNPVHSVFWLVVAFISSAALFILLGVDFIALMFIIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDI------EVAEPRKKRGFLGSFFIGILAAELIVCASNFM--- 113 VGA+ + FLF+IMML++ E +G L E I + M Sbjct: 61 VGAIAILFLFVIMMLNLTDFTPAFRRGGEADMTNYVPIGLAVGTLFFEAIASSWLIMGGP 120 Query: 114 ------VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + + + K +N+E IG++LYT Y + FILL++M+GAIVL Sbjct: 121 YVYRGLLGAWDLANPWFLKKYHNIEAIGRILYTDCYYLFILVSFILLVAMLGAIVLTQEI 180 Query: 168 RRDI----KRQDISKQLES 182 +I K+QDI Q Sbjct: 181 GTEIGPTAKKQDIFVQTSR 199 >gi|133900472|gb|ABO41402.1| NADH dehydrogenase subunit 6 [Hybanthus concolor] Length = 179 Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFCNISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|133900520|gb|ABO41426.1| NADH dehydrogenase subunit 6 [Passiflora coccinea] Length = 179 Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGSVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRRNAIDF 177 >gi|133900398|gb|ABO41365.1| NADH dehydrogenase subunit 6 [Brexia madagascariensis] gi|133900438|gb|ABO41385.1| NADH dehydrogenase subunit 6 [Elaeodendron orientale] gi|133900500|gb|ABO41416.1| NADH dehydrogenase subunit 6 [Gymnosporia arbutifolia] gi|133900502|gb|ABO41417.1| NADH dehydrogenase subunit 6 [Gymnosporia senegalensis] Length = 179 Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177 >gi|291298807|ref|YP_003510085.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Stackebrandtia nassauensis DSM 44728] gi|290568027|gb|ADD40992.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Stackebrandtia nassauensis DSM 44728] Length = 256 Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 1/168 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ + + + + +V R+ ++S L + +++L F+ + ++V Sbjct: 14 TGEAITFWILAPIILGGAIGMVLARSAVHSALLLACTMLGLGVIYMLQSGPFIGFVQIIV 73 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGE 120 Y GA+++ FLF+IM++ D + + RG + + +GI A L+ V + Sbjct: 74 YTGAIMMLFLFVIMLVGRDSKDSLLETLRGQRIAAIGLGIGMALLLCTGLARGVGAVSAV 133 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 NV+ I L+T+Y + E++ +L+ + +GA+VL + Sbjct: 134 GLDEANANGNVKGIAAELFTKYVFAFEVTSALLITAAVGAMVLAHVEK 181 >gi|118472606|ref|YP_886415.1| NADH dehydrogenase subunit J [Mycobacterium smegmatis str. MC2 155] gi|118173893|gb|ABK74789.1| NADH dehydrogenase subunit j [Mycobacterium smegmatis str. MC2 155] Length = 252 Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 92/181 (50%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A++ + VV R +YS L ++ A L++ A F+ ++ +VV Sbjct: 17 TSEAVVFWVVGTVALVGAIGVVAARKAVYSAVFLACTMISLAVLYIAQDAPFLGVVQIVV 76 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D+ + +G + I ++V A V A Sbjct: 77 YTGAVMMLFLFVLMLIGVDLTESLVETIKGHRIAALIAGAGFGILVIAGIGNVSVAGFSG 136 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G NVE + +++T+Y + E++ +L+ + +GA+VL R R + ++ +E Sbjct: 137 LAAANSGGNVEGLAALIFTRYLWAFELTSALLITAALGAMVLAHRERFERRKTQRELAIE 196 Query: 182 S 182 Sbjct: 197 R 197 >gi|133900420|gb|ABO41376.1| NADH dehydrogenase subunit 6 [Clusia rosea] Length = 178 Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|317097375|ref|YP_004123584.1| NADH dehydrogenase subunit 6 [Plakina monolopha] gi|308912589|gb|ADO51356.1| NADH dehydrogenase subunit 6 [Plakina monolopha] Length = 197 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 14/191 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 4 LFYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS--------------NF 112 + FLF+IMML++ +G+ I N Sbjct: 64 AILFLFVIMMLNLTDLEGAGDMSNFIPIGSVMGVFLLFEIFIIGREAIVYNNRDSDYENL 123 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 ++S + K N+E +G +LYT Y Y ++ FILL++MIGAIVL ++K Sbjct: 124 TDVLGFWDVSIEIIKFYNIEVLGXILYTDYFYSFILASFILLVAMIGAIVLTQELGIELK 183 Query: 173 RQDISKQLESN 183 RQD+ Q N Sbjct: 184 RQDLFIQTSRN 194 >gi|133900552|gb|ABO41442.1| NADH dehydrogenase subunit 6 [Sauvagesia erecta] Length = 179 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV LI F + +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFLILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVSRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTNSLRYMVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852594|gb|ACV71309.1| NADH dehydrogenase subunit 6 [Garcinia macrophylla] Length = 178 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852640|gb|ACV71332.1| NADH dehydrogenase subunit 6 [Ixonanthes reticulata] Length = 178 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|39995456|ref|NP_951407.1| NADH dehydrogenase I subunit J [Geobacter sulfurreducens PCA] gi|39982219|gb|AAR33680.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens PCA] gi|298504455|gb|ADI83178.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens KN400] Length = 167 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 96/166 (57%), Gaps = 1/166 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ FF + + +A+++S LV+T +NPI S SLI F A +++L A F+A I ++VY Sbjct: 1 METFFFTIVAAVAVLASILVITCKNPINSALSLILTFFCLATFYVMLDAPFMAAIQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +F+IM+L++ E LGS +L + + +GE+S Sbjct: 61 AGAIMVLIVFVIMLLNVRTEAGRRSSHTVLLGSLVGIFTLVQLFYVLNRSSLTGNKGEIS 120 Query: 123 R-LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 L+ + + E IGK LYT + P E++ +LL+++IGA++L + Sbjct: 121 PELIHRIGHTEIIGKALYTDFLLPFEVTSILLLVAIIGAVILTKKK 166 >gi|133900490|gb|ABO41411.1| NADH dehydrogenase subunit 6 [Lunania parviflora] Length = 179 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 ALMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTASLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|158317827|ref|YP_001510335.1| NADH dehydrogenase subunit J [Frankia sp. EAN1pec] gi|158113232|gb|ABW15429.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Frankia sp. EAN1pec] Length = 323 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 88/170 (51%), Gaps = 1/170 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F+L + +A++++ +V +R+ ++S L+ A +L+ A F+ + ++VY Sbjct: 19 EAWTFWLLAPVALLAALGMVLMRSAVHSALLLVVNLFCVAVFYLIQDAPFLGFVQIIVYT 78 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF++M++ +D + RG + + +G+ A L+ + + Sbjct: 79 GAIMVLFLFVLMLVGVDSSDSLVETLRGQRIAAVILGLGFAGLLAFPIGRAIDGGKAAGL 138 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 G NV IG++L+TQY + E +L+++ IG +VL R K Sbjct: 139 EAANTGGNVHAIGRLLFTQYVFVFEAISVLLVVAAIGTMVLGHREHTGEK 188 >gi|257852634|gb|ACV71329.1| NADH dehydrogenase subunit 6 [Eliea articulata] Length = 178 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKKTAYLKYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|56791560|gb|AAW30318.1| NADH dehydrogenase subunit 6 [Laurus nobilis] Length = 182 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 11/182 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +VV +NP++ V I F + +GL LLLG +F AMI+ VV++GA+ Sbjct: 1 VLSSPALVSGLMVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAAS 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124 FLF++MM +I I R S IG IL E+ N + + Sbjct: 61 FLFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120 Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ + Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFR 180 Query: 179 QL 180 + Sbjct: 181 RN 182 >gi|11466584|ref|NP_066474.1| NADH dehydrogenase subunit 6 [Rhodomonas salina] gi|10444171|gb|AAG17745.1|AF288090_21 NADH dehydrogenase subunit 6 [Rhodomonas salina] Length = 207 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 110/207 (53%), Gaps = 12/207 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FYLFS + + +F V+ RNPI+S+ L+F F NAA L +LLGA+F+A++ L+ Sbjct: 1 MCFNIQLFYLFSSLICVCAFSVIFSRNPIHSILFLVFLFFNAAALLILLGADFLAILFLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM------- 113 VYVGAV V FLF++MML + + G L I E+ + + Sbjct: 61 VYVGAVAVLFLFVVMMLSGKLIKTKINFFYGPLVILLAFIFLCEIFLIIEQNLNFLSSNI 120 Query: 114 -----VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + ++ +NVE IG VLYT + Y + ILL++MIGAIVL L R Sbjct: 121 YFLNDILNPLFIWKDKIYCLSNVEIIGSVLYTYFFYFFIVGSLILLVAMIGAIVLTLYKR 180 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKS 195 D+K Q I KQ + N + SI + K S Sbjct: 181 NDLKTQFIFKQAKKNFEASIQLTKNDS 207 >gi|133900518|gb|ABO41425.1| NADH dehydrogenase subunit 6 [Parnassia grandifolia] Length = 179 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETLPLLPTQRNTTSLRYMVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQDVFRRNAIDF 177 >gi|257852592|gb|ACV71308.1| NADH dehydrogenase subunit 6 [Garcinia latissima] Length = 178 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMV----------FSAEGELSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIQLLPTQRKTAYLKYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900528|gb|ABO41430.1| NADH dehydrogenase subunit 6 [Podocalyx loranthoides] Length = 179 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTLVKRQDIFRRNAIDF 177 >gi|133900486|gb|ABO41409.1| NADH dehydrogenase subunit 6 [Leonia glycycarpa] gi|133900546|gb|ABO41439.1| NADH dehydrogenase subunit 6 [Rinorea pubiflora] Length = 179 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|257852628|gb|ACV71326.1| NADH dehydrogenase subunit 6 [Trigonostemon verrucosus] Length = 180 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGTVKRQDIFRRNAIDF 179 >gi|257852714|gb|ACV71369.1| NADH dehydrogenase subunit 6 [Plagiopteron suaveolens] Length = 178 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I + R S IG I E+ N + + + V Sbjct: 61 IQISEIQEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRYTTSLRYTVYAGKVGS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYVVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177 >gi|319950460|ref|ZP_08024374.1| NADH:ubiquinone oxidoreductase subunit J [Dietzia cinnamea P4] gi|319435883|gb|EFV91089.1| NADH:ubiquinone oxidoreductase subunit J [Dietzia cinnamea P4] Length = 268 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 104/197 (52%), Gaps = 8/197 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S+ F++ + +A+ + VV +YS L V+ A L++ GA F+ + +VVY Sbjct: 6 ESVLFWILATVAVAGALGVVAAPRAVYSALCLAATMVSLAVLYMAQGAVFLGVGQIVVYT 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+V FLF++M++ ++ + + RG + + L +++ + + Sbjct: 66 GAVMVLFLFVVMLIGVESSDSLVERIRGHRVAAILAGLGFGVLLATG--FARAELPPFAG 123 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISKQ- 179 G+ V + ++L++++ + E++G +L+++ +GA+VL R R R +RQ +S+Q Sbjct: 124 FAAGGSEVPALAELLFSRHVWAFELTGVLLIIATLGAMVLAHRERFTGRLTQRQ-LSEQR 182 Query: 180 -LESNPDNSIVMVKVKS 195 L+ D+S + + S Sbjct: 183 FLDWQRDDSARVTPLPS 199 >gi|133900414|gb|ABO41373.1| NADH dehydrogenase subunit 6 [Celastrus orbiculatus] Length = 179 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SVF I F++ +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVFFPILVFLDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLGYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177 >gi|133900476|gb|ABO41404.1| NADH dehydrogenase subunit 6 [Hypericum empetrifolium] Length = 179 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKNTAYLKYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 ++E +G +LYT Y + ILL++MIGAIVL + + +KRQDI ++ + Sbjct: 121 WTSLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKQVKRQDIFRRNSIDF 177 >gi|257852694|gb|ACV71359.1| NADH dehydrogenase subunit 6 [Tricliceras longipedunculatum] Length = 178 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLGYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRRNAIDF 177 >gi|257852662|gb|ACV71343.1| NADH dehydrogenase subunit 6 [Paropsia madagascariensis] Length = 178 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGSVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTQVKRQNIFRRNAIDF 177 >gi|257852700|gb|ACV71362.1| NADH dehydrogenase subunit 6 [Viola pubescens] Length = 178 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|257852596|gb|ACV71310.1| NADH dehydrogenase subunit 6 [Aneulophus africanus] Length = 178 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQEIFRRNAIDF 177 >gi|133900412|gb|ABO41372.1| NADH dehydrogenase subunit 6 [Casearia sylvestris] Length = 179 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 ALMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFIFDNESIPLLPTQRKTTSLRYTVYAVKVRN 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|257852590|gb|ACV71307.1| NADH dehydrogenase subunit 6 [Montrouziera cauliflora] Length = 178 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRKTAYLKYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|56791572|gb|AAW30324.1| NADH dehydrogenase subunit 6 [Piper betle] Length = 177 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 92/177 (51%), Gaps = 11/177 (6%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 S A++S +VV +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ V F Sbjct: 1 LSSPALVSGLMVVRAKNPVHSVSFPILVFCDTSGLLLLLGLDFSAMISPVVHIGAIAVSF 60 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGE--------- 120 LF++MM +I I R S IG++ E+ N + Sbjct: 61 LFVVMMFNIQIAETHEEVLRYLPVSGIIGLIFWWEMFFIFDNETIPLLPTHRKTTSLRYT 120 Query: 121 -LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ Sbjct: 121 VYAGKVRSWTNLETLGNLLYTYYSVRFLVPSLILLVAMIGAIVLTMHRTSKVKRQDV 177 >gi|16332084|ref|NP_442812.1| NADH dehydrogenase subunit J [Synechocystis sp. PCC 6803] gi|2506948|sp|P26523|NU6C_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName: Full=NAD(P)H dehydrogenase I, chain 6; AltName: Full=NDH-1, chain 6 gi|1001393|dbj|BAA10883.1| NADH dehydrogenase subunit 6 [Synechocystis sp. PCC 6803] Length = 198 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + +F+ I ++ VV + N +YS F L F++ +G+++LL A+FVA ++VY Sbjct: 7 VQYISFLILAFLVIGAALGVVLLSNIVYSAFLLGGVFLSISGIYILLNADFVAAAQVLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + ++ + +L + ++ + S ++ + Sbjct: 67 VGAVSVLILFAIMLVNKREDFSKIPGR--WLRNVSTALVCTGIFALLSTMVLITPWQINE 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 F N + IGK ++ Y P E++ +LL++M+GAI+L R Sbjct: 125 TGPFVENTLVTIGKHFFSDYLLPFELASVLLLMAMVGAIILARR 168 >gi|133900410|gb|ABO41371.1| NADH dehydrogenase subunit 6 [Caryocar glabrum] Length = 179 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V NP++SV I F++ +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAPNPVHSVLFPILVFLDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900556|gb|ABO41444.1| NADH dehydrogenase subunit 6 [Stachystemon axillaris] Length = 179 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + ++KRQ I ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTEVKRQGIFRRNAIDF 177 >gi|133900416|gb|ABO41374.1| NADH dehydrogenase subunit 6 [Cespedesia spathulata] Length = 179 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV LI F + +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFLILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900474|gb|ABO41403.1| NADH dehydrogenase subunit 6 [Hydnocarpus sp. Chase 1301] Length = 181 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGGVKRQDIFRRNAIDF 179 >gi|257852636|gb|ACV71330.1| NADH dehydrogenase subunit 6 [Triadenum walteri] Length = 178 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQKNTAYLKYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 ++E +G +LYT Y + ILL++MIGAIVL + + +KRQDI ++ + Sbjct: 121 WTSLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKQVKRQDIFRRNSIDF 177 >gi|56791574|gb|AAW30325.1| NADH dehydrogenase subunit 6 [Platanus occidentalis] Length = 177 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 11/177 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +V +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ V Sbjct: 1 VLSSPALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVS 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124 FLF++MM I I R S IG IL E+ N + + + Sbjct: 61 FLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFIFFNETIPLLPTQRNTTSLRY 120 Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 V N+E +G +LYT Y + ILL++MIGAIVL + +KRQD Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYGVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQD 177 >gi|172037137|ref|YP_001803638.1| NADH dehydrogenase subunit J [Cyanothece sp. ATCC 51142] gi|171698591|gb|ACB51572.1| NADH dehydrogenase subunit 6 [Cyanothece sp. ATCC 51142] Length = 208 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 1/164 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + II++ VV + N +YS F L F++ +G+++LL A+FVA +++Y Sbjct: 7 VQVISFAILAALVIIAALGVVLLENIVYSAFLLGGVFISISGIYVLLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + + R + + A+ ++ E + Sbjct: 67 VGAVNVLILFAIMLVNKKQDYSN-LPGRWIKRGATALVCGGLFALLATMVLITPWSLESN 125 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 N V IGK ++ + P E++ +LL++M+GAIVL R Sbjct: 126 APGLIENTVVEIGKHFFSDFLLPFELASVLLLMAMVGAIVLARR 169 >gi|145225069|ref|YP_001135747.1| NADH dehydrogenase subunit J [Mycobacterium gilvum PYR-GCK] gi|145217555|gb|ABP46959.1| NADH dehydrogenase subunit J [Mycobacterium gilvum PYR-GCK] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 91/179 (50%), Gaps = 2/179 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F++ + +++ + V+ +YS SL + A L++ GA F+ ++ +VVY GA Sbjct: 2 ILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYTGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V++ FLF++MM+ +D + RG + L +++ A V + Sbjct: 62 VMMLFLFVLMMIGVDSSESLVETLRGQRIAALAVGLGFGILLIAGIGSVSATGIVGLDQA 121 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 G NVE + +++T+Y + E++G +L+ + +GA+VL R R +R+ ++L Sbjct: 122 NGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRER--FQRRKTQRELAVER 178 >gi|56791554|gb|AAW30315.1| NADH dehydrogenase subunit 6 [Amborella trichopoda] Length = 179 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 12/179 (6%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A +SS +V+ +NP++SVF I F N +GL +LLG +F A I LVVYVGA+ V FLF+ Sbjct: 1 IASVSSVMVIRAKNPVHSVFFFILVFFNTSGLLVLLGLDFFATIFLVVYVGAIAVLFLFV 60 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS-----------NFMVFSAEGELS 122 ++MLDI I R IG+L I + + Sbjct: 61 VLMLDIKIAEIHENLLRHLPVGGIIGVLFLLEIFFLVDNDYIPILPTKLSTTYLTYTVYA 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL-MLRHRRDIKRQDISKQL 180 + N+E +G +LYT Y + ILL++MIGAIV + +KRQD+ ++ Sbjct: 121 EKIQSWTNLETLGNLLYTTYFVLFLVYSLILLVAMIGAIVQKTMHKTTRVKRQDVFRRN 179 >gi|257852588|gb|ACV71306.1| NADH dehydrogenase subunit 6 [Mammea siamensis] Length = 178 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGLIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|113953515|ref|YP_731811.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9311] gi|113880866|gb|ABI45824.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6 [Synechococcus sp. CC9311] Length = 199 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F S + ++ + VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 STQLICFLALSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++A + G + L + +V + E Sbjct: 66 YVGAVNVLILFAIMLVNKKEDLAP--IPGLPIRRLLSGGVCVGLFALLTRVVVTTPWTEG 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + + V IG+ L+T Y P E++ +LL++MIGAIVL R + + Sbjct: 124 PTPIGEDATVR-IGEHLFTDYLLPFELASVLLLMAMIGAIVLARRDVQSV 172 >gi|317097078|ref|YP_004123217.1| NADH dehydrogenase subunit 6 [Plakortis halichondrioides] gi|308912711|gb|ADO51470.1| NADH dehydrogenase subunit 6 [Plakortis halichondrioides] Length = 197 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 14/190 (7%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY + ++S +V++ NPI+SVF LI F+ A+ LF+LL +F+A+I L+VYVGA+ Sbjct: 5 FYAITLAVLVSGIMVISALNPIHSVFWLIAVFLGASALFILLNIDFIALIFLIVYVGAIA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR---- 123 + LF+IMML++ +G+ I + + G+ + Sbjct: 65 IXXLFVIMMLNLTDLEGVGDMSNYIPIGSVMGVFLLFEIFIIGREAIVYSNGDTNYGXLM 124 Query: 124 ----------LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + K +N+E +G+VLYT Y Y ++ FILL++MIGAIV ++KR Sbjct: 125 DVLDFSDVSLEIIKFSNIEALGRVLYTDYFYSFLLASFILLVAMIGAIVXTHELGIELKR 184 Query: 174 QDISKQLESN 183 QD+ Q N Sbjct: 185 QDLFIQTSRN 194 >gi|325003715|ref|ZP_08124827.1| NADH:ubiquinone oxidoreductase subunit J [Pseudonocardia sp. P1] Length = 284 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 93/201 (46%), Gaps = 3/201 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+ + +V R+ +++ L+ + A L+++ A F+ + ++V Sbjct: 17 TGEAITFWILGPVALAGALGLVFARHAVHAALLLVLTMFSIAVLYIVQSAPFLGFVQIIV 76 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAE 118 Y GAV++ FLF++M++ D + + RG + F +G+ A + + + Sbjct: 77 YTGAVMMLFLFVLMLVGKDSKDSVIEVLRGQRAAALVFGVGLAALLVAGISRGLTEVTPA 136 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 G + + NV +G++++T Y E+S +L+++ +G +VL + + Sbjct: 137 GLQAGGMGGSANVAGLGRLIFTDYLLAFELSAALLMVAALGGMVLTGSQSSQHAKLSQRE 196 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 + + G G+ Sbjct: 197 TVLRRLRGQHARISPLPGPGV 217 >gi|133900510|gb|ABO41421.1| NADH dehydrogenase subunit 6 [Monotaxis megacarpa] Length = 181 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 13/176 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDLFRRNA 176 >gi|87123594|ref|ZP_01079445.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Synechococcus sp. RS9917] gi|86169314|gb|EAQ70570.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Synechococcus sp. RS9917] Length = 200 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F + + +I + VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 STQLICFVALAAVVVIGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++A + + + A L ++ + Sbjct: 66 YVGAVNVLILFAIMLVNKREDLAPIQGL--PIRRLLSAGVCAGLFALLVRVVITTPWAVP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 E IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 GPAAIGEGATERIGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 168 >gi|15610290|ref|NP_217670.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Rv] gi|15842730|ref|NP_337767.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis CDC1551] gi|31794330|ref|NP_856823.1| NADH dehydrogenase subunit J [Mycobacterium bovis AF2122/97] gi|121639037|ref|YP_979261.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663009|ref|YP_001284532.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Ra] gi|148824348|ref|YP_001289102.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis F11] gi|215405152|ref|ZP_03417333.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 02_1987] gi|215413021|ref|ZP_03421722.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A] gi|215428610|ref|ZP_03426529.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T92] gi|215432113|ref|ZP_03430032.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054] gi|215447443|ref|ZP_03434195.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85] gi|218754933|ref|ZP_03533729.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis GM 1503] gi|224991529|ref|YP_002646218.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Tokyo 172] gi|253800188|ref|YP_003033189.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN 1435] gi|254365779|ref|ZP_04981824.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium tuberculosis str. Haarlem] gi|254552244|ref|ZP_05142691.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188195|ref|ZP_05765669.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis CPHL_A] gi|260202301|ref|ZP_05769792.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T46] gi|260206493|ref|ZP_05773984.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis K85] gi|289444719|ref|ZP_06434463.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T46] gi|289448834|ref|ZP_06438578.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis CPHL_A] gi|289555427|ref|ZP_06444637.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN 605] gi|289575866|ref|ZP_06456093.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis K85] gi|289746963|ref|ZP_06506341.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis 02_1987] gi|289751832|ref|ZP_06511210.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T92] gi|289755273|ref|ZP_06514651.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054] gi|289759284|ref|ZP_06518662.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85] gi|289763337|ref|ZP_06522715.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium tuberculosis GM 1503] gi|294995505|ref|ZP_06801196.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 210] gi|297635797|ref|ZP_06953577.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis KZN 4207] gi|297732794|ref|ZP_06961912.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis KZN R506] gi|298526628|ref|ZP_07014037.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A] gi|306777471|ref|ZP_07415808.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu001] gi|306782196|ref|ZP_07420533.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu002] gi|306786017|ref|ZP_07424339.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu003] gi|306790382|ref|ZP_07428704.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu004] gi|306794907|ref|ZP_07433209.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu005] gi|306799107|ref|ZP_07437409.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu006] gi|306804950|ref|ZP_07441618.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu008] gi|306809139|ref|ZP_07445807.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu007] gi|306969241|ref|ZP_07481902.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu009] gi|306973588|ref|ZP_07486249.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu010] gi|307085900|ref|ZP_07495013.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu012] gi|313660127|ref|ZP_07817007.1| NADH:ubiquinone oxidoreductase subunit J [Mycobacterium tuberculosis KZN V2475] gi|1781214|emb|CAB06285.1| PROBABLE NADH DEHYDROGENASE I (CHAIN J) NUOJ (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN J) [Mycobacterium tuberculosis H37Rv] gi|13883052|gb|AAK47581.1| NADH dehydrogenase I, J subunit [Mycobacterium tuberculosis CDC1551] gi|31619926|emb|CAD95270.1| PROBABLE NADH DEHYDROGENASE I (CHAIN J) NUOJ (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN J) [Mycobacterium bovis AF2122/97] gi|121494685|emb|CAL73166.1| Probable NADH dehydrogenase I (chain J) nuoJ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151292|gb|EBA43337.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium tuberculosis str. Haarlem] gi|148507161|gb|ABQ74970.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Ra] gi|148722875|gb|ABR07500.1| NADH dehydrogenase I chain J nuoJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium tuberculosis F11] gi|224774644|dbj|BAH27450.1| NADH dehydrogenase subunit J [Mycobacterium bovis BCG str. Tokyo 172] gi|253321691|gb|ACT26294.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN 1435] gi|289417638|gb|EFD14878.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T46] gi|289421792|gb|EFD18993.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis CPHL_A] gi|289440059|gb|EFD22552.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN 605] gi|289540297|gb|EFD44875.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis K85] gi|289687491|gb|EFD54979.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis 02_1987] gi|289692419|gb|EFD59848.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T92] gi|289695860|gb|EFD63289.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis EAS054] gi|289710843|gb|EFD74859.1| NADH dehydrogenase I (chain J) nuoJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium tuberculosis GM 1503] gi|289714848|gb|EFD78860.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis T85] gi|298496422|gb|EFI31716.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis 94_M4241A] gi|308214183|gb|EFO73582.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu001] gi|308324957|gb|EFP13808.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu002] gi|308329374|gb|EFP18225.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu003] gi|308333203|gb|EFP22054.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu004] gi|308336693|gb|EFP25544.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu005] gi|308340534|gb|EFP29385.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu006] gi|308344473|gb|EFP33324.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu007] gi|308348469|gb|EFP37320.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu008] gi|308353099|gb|EFP41950.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu009] gi|308357072|gb|EFP45923.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu010] gi|308364635|gb|EFP53486.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis SUMu012] gi|323718243|gb|EGB27423.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis CDC1551A] gi|328459925|gb|AEB05348.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis KZN 4207] Length = 262 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 93/183 (50%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ S +A++ + VV N +YS L + A ++ A F+ ++ +VV Sbjct: 15 TGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVV 74 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + + + +++ ++ V + Sbjct: 75 YTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAG 134 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + NVE + +++++Y + E++ +L+ + +GA+VL R R +R+ ++L Sbjct: 135 LTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER--FERRKTQRELS 192 Query: 182 SNP 184 Sbjct: 193 QER 195 >gi|257852698|gb|ACV71361.1| NADH dehydrogenase subunit 6 [Hymenanthera alpina] Length = 178 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVPFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNA 174 >gi|133900408|gb|ABO41370.1| NADH dehydrogenase subunit 6 [Carpotroche longifolia] gi|133900446|gb|ABO41389.1| NADH dehydrogenase subunit 6 [Erythrospermum phytolaccoides] Length = 181 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179 >gi|257852668|gb|ACV71346.1| NADH dehydrogenase subunit 6 [Heywoodia lucens] Length = 180 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNAIDF 179 >gi|163854294|ref|YP_001633640.1| NADH dehydrogenase subunit 6 [Negombata magnifica] gi|163639449|emb|CAM06605.1| NADH dehydrogenase subunit 6 [Negombata magnifica] Length = 195 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 4/181 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F IIS +V++ N ++SV LI +F +A LF+ L +F+A+I L+VYVGA+ + Sbjct: 7 VFCMFLIISGIMVISALNSVHSVLWLIVSFTSAVVLFIFLEVDFIALIFLIVYVGAIAIL 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRLV 125 FLF+IMML++ F IG++ ++ ++ ++ + + Sbjct: 67 FLFVIMMLNLTDLRGLLDMSNYMPVGFIIGVVVFFEVLLFFSWGFGDLLEGIDYFRWDFL 126 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 K +N++ +G++LYT YAY ++ FILL++MIGAIVL R IK+Q+ Q+ D Sbjct: 127 EKISNIQVLGELLYTNYAYLFILASFILLVAMIGAIVLTFSERSQIKKQESFIQISRELD 186 Query: 186 N 186 Sbjct: 187 E 187 >gi|257852572|gb|ACV71298.1| NADH dehydrogenase subunit 6 [Pangium edule] Length = 181 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 13/178 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + + Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESN 183 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAID 178 >gi|257852658|gb|ACV71341.1| NADH dehydrogenase subunit 6 [Medusagyne oppositifolia] Length = 178 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|166895624|ref|YP_001661418.1| NADH dehydrogenase subunit 6 [Cycas taitungensis] gi|166706956|dbj|BAF98420.1| NADH dehydrogenase subunit 6 [Cycas taitungensis] Length = 201 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 11/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++ +VV NP++ V I F N +GL +L G + AMI+ VV++GA Sbjct: 1 MILSVSSSPALVPGLMVVRAENPVHPVSFPIPVFRNTSGLLILSGPDLSAMISPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V F ++MML+I I + R S IG IL E+ + N + S + Sbjct: 61 IAVLFSSVVMMLNIQIAEIHEKVSRYSPVSGLIGPILRWEMFLILDNDHIPSLPTYIGTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + N E +G +L+T Y+ +S + L++MIGAIVL + +KRQ Sbjct: 121 SLRYTVHAGEIQSWTNSETLGNLLHTYYSVRFLVSSPVPLVAMIGAIVLTMHRTTKVKRQ 180 Query: 175 DISKQLESNPDNSI 188 D+ ++ + +I Sbjct: 181 DVFRRNAIDSRRTI 194 >gi|133900480|gb|ABO41406.1| NADH dehydrogenase subunit 6 [Kiggelaria africana] Length = 181 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + + Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179 >gi|78224536|ref|YP_386283.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter metallireducens GS-15] gi|78195791|gb|ABB33558.1| NADH dehydrogenase subunit J [Geobacter metallireducens GS-15] Length = 167 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 1/166 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ FF + + +A+++S LV+T +NPI S SLI F A L++ L A F+A I ++VY Sbjct: 1 METFFFMIVAAVAVLASILVITCKNPINSALSLILTFFCLATLYVTLDAPFMAAIQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121 GA++V +F+IM+L++ E GS +L + + +G + Sbjct: 61 AGAIMVLIVFVIMLLNVRTESGRRSSHSVLFGSLIGLFSLFQLFYLFNRSSLTGQKGAID 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 S L+ K + E IGK LYT + P E++ +LL+++IGA+VL + Sbjct: 121 SALINKVGHTELIGKALYTDFLLPFEVTSILLLVAIIGAVVLTKKK 166 >gi|326902622|gb|EGE49555.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis W-148] Length = 262 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 93/183 (50%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ S +A++ + VV N +YS L + A ++ A F+ ++ +VV Sbjct: 15 TGEAVMFWVLSALALLGAVGVVLAINAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVV 74 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + + + +++ ++ V + Sbjct: 75 YTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAG 134 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + NVE + +++++Y + E++ +L+ + +GA+VL R R +R+ ++L Sbjct: 135 LTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER--FERRKTQRELS 192 Query: 182 SNP 184 Sbjct: 193 QER 195 >gi|257852676|gb|ACV71350.1| NADH dehydrogenase subunit 6 [Froesia diffusa] Length = 178 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 11/178 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDFK 178 >gi|133900540|gb|ABO41436.1| NADH dehydrogenase subunit 6 [Quiina pteridophylla] Length = 179 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|307152385|ref|YP_003887769.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 7822] gi|306982613|gb|ADN14494.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 7822] Length = 204 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 98/196 (50%), Gaps = 4/196 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + I ++ VV + N +YS F L F++ AG+++LL A+FVA +++Y Sbjct: 7 VQIVSFLILAGFLITAALGVVLLSNIVYSAFLLAGVFLSIAGIYILLNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + R ++ G++ L ++ + S Sbjct: 67 VGAVNVLILFAIMLVNKQEDFK--TVPRRWIRQIATGLVCLGLFALLGTMILITPWSINS 124 Query: 123 RLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDISKQL 180 N IGK ++ + P E++ +LL++M+GAI+L R ++K + Sbjct: 125 TSPAVVENTLVEIGKHFFSDFLLPFELASILLLMAMVGAIILARRDFIPELKSSEPGTTA 184 Query: 181 ESNPDNSIVMVKVKSG 196 + P+ ++ ++SG Sbjct: 185 LTLPERPRELISLESG 200 >gi|56791580|gb|AAW30328.1| NADH dehydrogenase subunit 6 [Eschscholzia californica] Length = 178 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 11/178 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +V +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ V Sbjct: 1 VLSSPALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVS 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124 FLF++MM I I R S IG IL E+ N + + Sbjct: 61 FLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120 Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ Sbjct: 121 TVHAGKVRSWTNLETLGNLLYTYYSVRFLVPSLILLVAMIGAIVLTMHRTTKVKRQDV 178 >gi|88809900|ref|ZP_01125406.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7805] gi|88786284|gb|EAR17445.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7805] Length = 199 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F + S + ++ + VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 STQLISFLVLSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++A + G + A L V + ++ + E Sbjct: 66 YVGAVNVLILFAIMLVNKREDLAP--IPGIAVRRLLSGGVCAGLFVLLTRVVLTTPWAEG 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +G + IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 PEPIGEGATIR-IGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 167 >gi|133900554|gb|ABO41443.1| NADH dehydrogenase subunit 6 [Scyphostegia borneensis] Length = 179 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNA 174 >gi|581746|emb|CAA44376.1| NDHG [Synechocystis sp. PCC 6803] Length = 202 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 90/163 (55%), Gaps = 2/163 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + +F+ I ++ VV + N +YS F L F++ +G+++LL A+FVA ++VY Sbjct: 7 VQYISFLILAFLVIGAALGVVLLSNIVYSAFLLGGVFLSISGIYILLNADFVAAAQVLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + ++ + +L + ++ + S ++ + Sbjct: 67 VGAVSVLILFAIMLVNKREDFSKIPGR--WLRNVSTALVCTGIFALLSTMVLITPWQINE 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 F N + IGK ++ Y P E++ +LL++M+GAI+L Sbjct: 125 TGPFVENTLVTIGKHFFSDYLLPFELASVLLLMAMVGAIILAR 167 >gi|148240625|ref|YP_001226012.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 7803] gi|147849164|emb|CAK24715.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 7803] Length = 199 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F + S + ++ + VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 STQLISFLVLSAVIVLGALGVVLLSNIVYSAFLLGGVFLAVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++A + G + A L V + ++ + + Sbjct: 66 YVGAVNVLILFAIMLVNKREDLAP--IPGIAVRRLLSGGVCAGLFVLLTRVVLTTPWAQG 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +G + IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 PEPIGEGATIR-IGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 167 >gi|133900484|gb|ABO41408.1| NADH dehydrogenase subunit 6 [Koilodepas bantamense] Length = 181 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDLFRRNAIDF 179 >gi|289065180|ref|YP_003434232.1| NADH dehydrogenase subunit 6 [Chattonella marina] gi|288871892|dbj|BAI70579.1| NADH dehydrogenase subunit 6 [Chattonella marina] Length = 203 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 72/201 (35%), Positives = 108/201 (53%), Gaps = 11/201 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + LFFYLFS + +IS+ +V+TV NP++SV LI FV +A + LLL EF++++ +++YV Sbjct: 3 ELLFFYLFSGLVLISATMVITVSNPVHSVLFLILGFVGSAAILLLLKVEFLSLMFVIIYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA------ 117 GA+ V FLF++MMLDI ++ + LG+ L + FS+ Sbjct: 63 GAIAVLFLFVVMMLDIKLKKSGASLGYTALGAISGLFLFFQFFYFIEKISPFSSSFLLEE 122 Query: 118 -----EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + K N+E +G+ LYT Y + I G +LL+ MIG IVL L K Sbjct: 123 LFSPYYFDWIDTIDKLTNMECLGQFLYTYYFFHFLIGGILLLVGMIGGIVLTLHVNYKSK 182 Query: 173 RQDISKQLESNPDNSIVMVKV 193 Q I KQL N+I + V Sbjct: 183 NQLICKQLSRQLKNAIFLTTV 203 >gi|118617955|ref|YP_906287.1| NADH dehydrogenase subunit J [Mycobacterium ulcerans Agy99] gi|183981489|ref|YP_001849780.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium marinum M] gi|118570065|gb|ABL04816.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium ulcerans Agy99] gi|183174815|gb|ACC39925.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium marinum M] Length = 262 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 92/183 (50%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A++ + VV N +YS L + A +++ A F+ ++ +VV Sbjct: 19 TGEAVTFWILGALALVGALGVVMAVNAVYSAMFLAMTMIILAVFYMIQDALFLGVVQVVV 78 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + + + +++ A+ V + Sbjct: 79 YTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFAG 138 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NVE + +++++Y + E++ +L+ + IGA+VL R R +R+ ++L Sbjct: 139 LTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRER--FERRKSQRELS 196 Query: 182 SNP 184 Sbjct: 197 QER 199 >gi|133900404|gb|ABO41368.1| NADH dehydrogenase subunit 6 [Calophyllum soulattri] Length = 178 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAI+L + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIILTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852600|gb|ACV71312.1| NADH dehydrogenase subunit 6 [Codiaeum variegatum] Length = 180 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDLFRRNAIDF 179 >gi|257852672|gb|ACV71348.1| NADH dehydrogenase subunit 6 [Phyllanthus epiphyllanthus] Length = 170 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I I Sbjct: 1 NPVHSVLFPILVFCDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHE 60 Query: 87 RKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFKGNNVENIG 135 R S IG IL E+ N + + + V N+E +G Sbjct: 61 EVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLG 120 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 NLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAVDF 169 >gi|257852574|gb|ACV71299.1| NADH dehydrogenase subunit 6 [Bonnetia sessilis] Length = 178 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHESVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLQYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + G ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFFLQGLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 177 >gi|332526756|ref|ZP_08402858.1| NADH-ubiquinone oxidoreductase, subunit J [Rubrivivax benzoatilyticus JA2] gi|332111159|gb|EGJ11191.1| NADH-ubiquinone oxidoreductase, subunit J [Rubrivivax benzoatilyticus JA2] Length = 210 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 69/198 (34%), Positives = 116/198 (58%), Gaps = 1/198 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FYLFS + + ++ V+T R+ ++ V L+ AF NAA +++LL AEF+A++ ++ Sbjct: 1 MNTTTALFYLFSAVLLFAALRVITARSTVHGVLYLVLAFFNAACIWMLLQAEFLAIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGAV+V FLF++MMLDI+ E + F L ++A E+ + + Sbjct: 61 VYVGAVMVLFLFVVMMLDINSESVRTGFWKHFPLAGMVGAVIALEMSLVLLRGFQPAQAP 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 EL+ + N +G LYT Y YPL+++ +LL++++ AI L LRHR+D +R D + Sbjct: 121 ELTAQALEMGNTRLLGIELYTHYLYPLQLAAVLLLVAIVAAIALTLRHRKDSRRVDPAMA 180 Query: 180 LESNPDNSIVMVKVKSGK 197 + + + +VKV + K Sbjct: 181 VRVKRADRVRLVKVPTVK 198 >gi|257852732|gb|ACV71378.1| NADH dehydrogenase subunit 6 [Cucumis sativus] Length = 180 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 13/176 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLE 181 N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHSAVKRQDVFRRNA 176 >gi|33860718|ref|NP_892279.1| NADH dehydrogenase subunit J [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633660|emb|CAE18617.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 199 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 10/187 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F + S + II + V+ + N +YS F L F++ AGL+LLL A FVA ++V Sbjct: 6 TTQIICFSVLSLVVIIGALGVILLENIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 YVGAV V +F IM+++ + +A + +R S + +L+ + V SN + Sbjct: 66 YVGAVNVLIIFAIMLVNKKEDLKAIANIKSRRIISTSICLTLLSLLIRVDLSNTWGLAEP 125 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DIS Sbjct: 126 ----NASIGEESTVRIGEHLFSDYLLPFEVASVLLLMAMIGAIVLA---RRDVMNEDIST 178 Query: 179 QLESNPD 185 L + + Sbjct: 179 GLPVDQE 185 >gi|111022881|ref|YP_705853.1| NADH dehydrogenase subunit J [Rhodococcus jostii RHA1] gi|110822411|gb|ABG97695.1| probable NADH dehydrogenase subunit J [Rhodococcus jostii RHA1] Length = 269 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 1/188 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F++ + +A+I + VV+ +YS L + A ++ GA F+ ++ +VV Sbjct: 17 TGEGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIAQGALFLGVVQIVV 76 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + L L++ + Sbjct: 77 YTGAVMMLFLFVLMLIGVDSSESLVENLRGQRVAAIAAGLGFGLLLIGGIGSASVSAFTG 136 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQL 180 NVE + ++++ +Y + E++G +L+ + IGA+VL R R K Q Q Sbjct: 137 LDQANAAGNVEGLAELVFVRYVWAFELTGALLITATIGAMVLAHRERFERRKDQRELSQD 196 Query: 181 ESNPDNSI 188 + Sbjct: 197 RVREGARV 204 >gi|284106854|ref|ZP_06386297.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Poribacteria sp. WGA-A3] gi|283830033|gb|EFC34309.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Poribacteria sp. WGA-A3] Length = 170 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 101/170 (59%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F F+ + ++++ LVV +RNPIYS SL+ F + AGL++ L AEF+A I ++VY Sbjct: 1 MATFVFLYFAAVILVAASLVVVLRNPIYSALSLLVMFFHVAGLYVTLHAEFLAAIQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +LF++M+L++ E ++ L + + A L+ + F V + + Sbjct: 61 AGAILVLYLFVVMLLNVKREERFNQQGTVALFLGLVLLTEAVLLAVSRGFNVATPDPGPE 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 N E+IG+VLY+ Y +P EI+ ILL++MIGA++L + + K Sbjct: 121 GAAKAVGNTESIGEVLYSTYLFPFEIASLILLVAMIGAVILSKKGIMESK 170 >gi|257852654|gb|ACV71339.1| NADH dehydrogenase subunit 6 [Lophira lanceolata] gi|257852656|gb|ACV71340.1| NADH dehydrogenase subunit 6 [Luxemburgia octandra] Length = 178 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|133900514|gb|ABO41423.1| NADH dehydrogenase subunit 6 [Ochna multiflora] Length = 179 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRDISGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|116073962|ref|ZP_01471224.1| NADH dehydrogenase subunit J [Synechococcus sp. RS9916] gi|116069267|gb|EAU75019.1| NADH dehydrogenase subunit J [Synechococcus sp. RS9916] Length = 200 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F + + + I + VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 STQLICFLVLASVVAIGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++A + + G + A L + + Sbjct: 66 YVGAVNVLILFAIMLVNKREDLAPIKGLQT--RRLISGGVCAGLFALLVRVALTTPWAVP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 GPAAVGEDATVRIGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 168 >gi|133900562|gb|ABO41447.1| NADH dehydrogenase subunit 6 [Trichadenia zeylanica] Length = 180 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + + Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKIRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179 >gi|257852678|gb|ACV71351.1| NADH dehydrogenase subunit 6 [Touroulia guianensis] Length = 178 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRETSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852666|gb|ACV71345.1| NADH dehydrogenase subunit 6 [Croizatia brevipetiolata] Length = 178 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV LI F + +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFLILVFCDTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNESIPLLPTQGNTTSLRYTVYAGKVGS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTKKVKRQDIFRRNA 174 >gi|326329619|ref|ZP_08195941.1| NADH dehydrogenase I, J subunit [Nocardioidaceae bacterium Broad-1] gi|325952615|gb|EGD44633.1| NADH dehydrogenase I, J subunit [Nocardioidaceae bacterium Broad-1] Length = 238 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 4/167 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + + +I++ ++ R P+++ SL V A ++ L A F+ + +VVY GA++ Sbjct: 3 FVILASVTVIAALGLLFARKPVHAALSLAVVMVGLAMIYATLEAPFLFAVQIVVYTGAIL 62 Query: 68 VFFLFIIMMLDIDIE--VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + FLF+IM++ +D + E + L + L A LI + + G S Sbjct: 63 MLFLFVIMLVGVDTSDTLKETIAGQKVLAALLGIGLGATLIAGVGQASIATMRGLSS--A 120 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +G NV+ + +L+++Y E + +L+ + IGA+VL R R D K Sbjct: 121 NEGGNVQRLADLLFSRYVIAFEATSALLITAAIGAMVLAHRERIDPK 167 >gi|240169661|ref|ZP_04748320.1| NADH dehydrogenase subunit J [Mycobacterium kansasii ATCC 12478] Length = 264 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 88/183 (48%), Gaps = 2/183 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+I + VV N +YS L + A +++ A F+ ++ +VV Sbjct: 23 TGEAVTFWILGALALIGALAVVLAVNAVYSAMFLAMTMIILAVFYMVQDALFLGVVQVVV 82 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + + +++ V + Sbjct: 83 YTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVGTGIGFGILLVGGIGNVATGGFAG 142 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 NVE + +++ +Y + E++ +L+ + IGA+VL R R +R+ ++L Sbjct: 143 LTAANANGNVEGLAALIFFRYLWAFELTSALLITAAIGAMVLAHRER--FERRKTQRELS 200 Query: 182 SNP 184 Sbjct: 201 EER 203 >gi|257852578|gb|ACV71301.1| NADH dehydrogenase subunit 6 [Anthodiscus amazonicus] Length = 178 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V NP++SV I F++ +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAPNPVHSVLFSILVFLDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852620|gb|ACV71322.1| NADH dehydrogenase subunit 6 [Ricinus communis] Length = 180 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDLFRRNAIDF 179 >gi|133900378|gb|ABO41355.1| NADH dehydrogenase subunit 6 [Acharia tragodes] Length = 181 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + + Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLILWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKIRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTSHSAVKRQDIFRRNAIDF 179 >gi|257852618|gb|ACV71321.1| NADH dehydrogenase subunit 6 [Omphalea diandra] Length = 180 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 13/176 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNMASLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + R +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHSNRHGAVKRQDVFRRNA 176 >gi|266679|sp|Q00243|NU6C_PLEBO RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName: Full=NAD(P)H dehydrogenase I, chain 6; AltName: Full=NDH-1, chain 6 gi|441181|dbj|BAA00816.1| NADH-ubiquinone oxidoreductase chain 6 homolog [Leptolyngbya boryana IAM M-101] Length = 199 Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M I S+ VV + N +YS F L F++ AGL+LLL A+FVA +++Y Sbjct: 7 VQIVSFAILAAMMIGSAIGVVLLENVVYSAFLLGGVFISIAGLYLLLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ K + L I + MV + +S Sbjct: 67 VGAVNVLILFAIMLVNKREAFQPIAKSWIRRAA---TALVCAGIFALLSAMVLTTPWAIS 123 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V +++ IG +T + P E++ +LL++++GAIVL R Sbjct: 124 TAVPIESSIITIGLHFFTDFLLPFELASILLLMALVGAIVLARRE 168 >gi|133900522|gb|ABO41427.1| NADH dehydrogenase subunit 6 [Pera bicolor] Length = 183 Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 88/182 (48%), Gaps = 16/182 (8%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-----RRDIKRQDISKQLES 182 N+E +G +LYT Y + ILL++MIGAIVL + R +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTPLNRNAVKRQDIFRRNAI 180 Query: 183 NP 184 + Sbjct: 181 DF 182 >gi|107736213|ref|YP_626509.1| NADH dehydrogenase subunit 6 [Briareum asbestinum] gi|100913613|gb|ABF69700.1| NADH dehydrogenase subunit 6 [Briareum asbestinum] Length = 185 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 17/187 (9%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IM++ +V + +I + S + + ++ Sbjct: 64 AILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYGLLTNSPKYISNPVIG 116 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR----------DIKRQDI 176 N+ IG LYT Y + I+ +LL++MIGAI+L + RQD+ Sbjct: 117 SKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAQQPNTPSLYNSHGVPSRSRQDL 176 Query: 177 SKQLESN 183 Q+ Sbjct: 177 FLQISRE 183 >gi|257852626|gb|ACV71325.1| NADH dehydrogenase subunit 6 [Tetrorchidium cf. macrophyllum Bell et al. 93-204] Length = 180 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTASLRYKVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHSPTHGAVKRQDLFRRNAIDF 179 >gi|257852724|gb|ACV71374.1| NADH dehydrogenase subunit 6 [Afrostyrax sp. Cheek 5007] Length = 180 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179 >gi|134095022|ref|YP_001100097.1| NADH dehydrogenase I subunit J [Herminiimonas arsenicoxydans] gi|133738925|emb|CAL61972.1| NADH-quinone oxidoreductase subunit J (NADH dehydrogenase I subunit J) (NDH-1 subunit J) [Herminiimonas arsenicoxydans] Length = 213 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 109/196 (55%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY+FS + + ++ V+T NP+++ L+ +F AA L++LL AEF++++ ++ Sbjct: 1 MEFTTVLFYVFSAILVFAAIRVITDSNPVHAALFLVLSFCTAAALWMLLKAEFLSIVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MM+DI + + IG++ + + A Sbjct: 61 VYVGAVMVLFLFVVMMVDIKLSNVREGFWGYLPLAATIGVVIVLEMAAVLFRGFWKAHTH 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + N + +GK++YTQY Y E++ +LLL+M+ A+ L +R R+D K + Sbjct: 121 VPEAAAMIGNTKELGKLIYTQYLYAFELAALLLLLAMVAAVALTMRKRKDTKYFAPGDAV 180 Query: 181 ESNPDNSIVMVKVKSG 196 + + + +VK+K+ Sbjct: 181 KVKSGDRLRVVKMKAE 196 >gi|325954443|ref|YP_004238103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Weeksella virosa DSM 16922] gi|323437061|gb|ADX67525.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Weeksella virosa DSM 16922] Length = 171 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 98/169 (57%), Gaps = 1/169 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ + FY+ + + ++S+ L+V RNPI+S+ LI F +G ++LL A+F+A++ ++ Sbjct: 1 MTIEEILFYVLAGLTVLSALLMVFSRNPIHSILYLIITFFCISGHYILLNAQFLAVVNII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V FLF++M+++++ E + + +L L V + + + Sbjct: 61 VYAGAIMVLFLFVVMLMNLNSEKKSFGTPIKITVASLVSLLFIILTVGIITENG-TPQTQ 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + +EN+G VLY++Y P E+S + + +MIGA++L + + Sbjct: 120 VEMAKGEIGLIENLGSVLYSEYVLPFELSSILFISAMIGAVILSKKDKE 168 >gi|254424929|ref|ZP_05038647.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Synechococcus sp. PCC 7335] gi|196192418|gb|EDX87382.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Synechococcus sp. PCC 7335] Length = 197 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 2/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F L + ++ + VV + + +YS F L F++ AG ++LL A FVA +++Y Sbjct: 5 VQVVSFGLLGLIMVVGALGVVLLSSIVYSAFLLGLVFISIAGFYILLNAGFVAAAQVLIY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + E K ++G G + A L S ++ S Sbjct: 65 VGAVNVLILFGIMLVNKQEDFIE--VKNAWIGKAATGAVCAGLFGLLSTMVLSHPWAISS 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +E IG+ ++ Y P E++ +LL++++GAI+L R Sbjct: 123 APAAGDKAIEVIGQHFFSDYLLPFELASVLLLIALVGAIILARRE 167 >gi|313672287|ref|YP_004050398.1| NADH dehydrogenase subunit j [Calditerrivibrio nitroreducens DSM 19672] gi|312939043|gb|ADR18235.1| NADH dehydrogenase subunit J [Calditerrivibrio nitroreducens DSM 19672] Length = 166 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L FY+ +F+AIISS ++T NP++S ++ F + AG+F+ L AEF+A I ++VY Sbjct: 1 MEQLGFYILAFVAIISSLFMITRENPVHSALWMLLTFFSVAGIFVQLNAEFIAAIQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +LF++M+L+ + R LG ++ ++++ + V G+ + Sbjct: 61 AGAILVLYLFVVMLLNPKSKGFIKIPFRYALGIVASFVVLIQILITLQSANVIGRSGQYT 120 Query: 123 RLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 ++ K NV+ G L+ Y P EI +LL++MIGAIVL + Sbjct: 121 AEIYEKYGNVKIFGYELFNNYLVPFEIVSVMLLVAMIGAIVLAKK 165 >gi|57239208|ref|YP_180344.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Welgevonden] gi|58579166|ref|YP_197378.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Welgevonden] gi|58617219|ref|YP_196418.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Gardel] gi|57161287|emb|CAH58208.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Welgevonden] gi|58416831|emb|CAI27944.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Gardel] gi|58417792|emb|CAI26996.1| NADH-quinone oxidoreductase chain J [Ehrlichia ruminantium str. Welgevonden] Length = 200 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 77/200 (38%), Positives = 120/200 (60%), Gaps = 9/200 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF+ F+ + I+SS V+ V NP+YSV LI F ++ LF+LLGAE +AM+ ++VY Sbjct: 1 MIYFFFHFFAVLVILSSIAVIYVSNPVYSVLFLILTFFMSSTLFILLGAELIAMLVIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLDI+ R K GF F IG+++ ++ F++ + Sbjct: 61 VGAVAVLFLFVVMMLDINYS----RFKHGFTKYFVIGLISGMILFVNMVFIIKHSATADL 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDISKQ 179 ++ +NV IG ++YT+Y Y +SG +LL+S+IG++VL LR + +I+RQ Q Sbjct: 117 VTESKPYVSNVMAIGNLIYTKYMYIFHLSGVLLLISIIGSLVLTLRDKGNNIRRQSPDIQ 176 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + +P + V VK G+ Sbjct: 177 ISRSP--FVKYVDVKVRGGV 194 >gi|284794760|ref|YP_003412113.1| NADH dehydrogenase subunit 6 [Phaeoceros laevis] gi|254596080|gb|ACT75321.1| NADH dehydrogenase subunit 6 [Phaeoceros laevis] Length = 201 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 11/198 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + S +A++S +N ++ V LI F N +GL +LLG + AMI LVVY GA Sbjct: 2 ILFSVPSSIALVSGVTATRAKNLVHFVLFLIPVFRNTSGLLVLLGLDSFAMIFLVVYAGA 61 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + + M +I I E+ E + +G IL E+ N + +LS Sbjct: 62 IAASSPSVAMTSNIKIAEIHENVLRYLPVGGIIGLILLLEIFFIVDNDYIPILPTKLSTA 121 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + N+E +G +LYT Y S FILL++MIGA VL + +KRQ Sbjct: 122 YLTYTVYAGKIQSWTNLETLGNLLYTTYFTLFLFSSFILLVAMIGATVLTMHKTTRVKRQ 181 Query: 175 DISKQLESNPDNSIVMVK 192 D+ +Q + N+I ++ Sbjct: 182 DVFRQNARDFQNTIKKIR 199 >gi|133900406|gb|ABO41369.1| NADH dehydrogenase subunit 6 [Carallia brachiata] Length = 179 Score = 133 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTYMRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|257852742|gb|ACV71383.1| NADH dehydrogenase subunit 6 [Medusandra richardsiana] Length = 180 Score = 133 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNAIDF 179 >gi|257852722|gb|ACV71373.1| NADH dehydrogenase subunit 6 [Ruptiliocarpon caracolito] Length = 173 Score = 133 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 11/172 (6%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I I Sbjct: 1 RAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAE 60 Query: 84 AEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGELSRL----------VFKGNNVE 132 R S IG++ E+ N + + + V N+E Sbjct: 61 IHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLE 120 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 TLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 172 >gi|133900452|gb|ABO41392.1| NADH dehydrogenase subunit 6 [Euphronia guianensis] Length = 181 Score = 133 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179 >gi|284929387|ref|YP_003421909.1| NADH dehydrogenase subunit J [cyanobacterium UCYN-A] gi|284809831|gb|ADB95528.1| NADH dehydrogenase subunit J [cyanobacterium UCYN-A] Length = 207 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 5/166 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + IIS+ VV + N +YS F L F+ +GL++LL A+F+A +++Y Sbjct: 7 VQLVSFAILAGLVIISALGVVLLSNIVYSAFLLGGVFIGISGLYILLNADFIAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF IM+++ + + K + ++ I + +V+ + Sbjct: 67 VGAINVLILFAIMLVNKKGDYSNSSKS---WINRVATMMVCGGIFALLSTVVYMTPWNVE 123 Query: 123 RLVFK--GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +V + + V IG+ L++ Y P E++ +LL++M+GAIVL R Sbjct: 124 AVVPEVLESTVIKIGRHLFSDYLLPFELASVLLLIAMVGAIVLARR 169 >gi|270158105|ref|ZP_06186762.1| NADH-quinone oxidoreductase J subunit [Legionella longbeachae D-4968] gi|289163630|ref|YP_003453768.1| NADH-quinone oxidoreductase chain J [Legionella longbeachae NSW150] gi|269990130|gb|EEZ96384.1| NADH-quinone oxidoreductase J subunit [Legionella longbeachae D-4968] gi|288856803|emb|CBJ10614.1| NADH-quinone oxidoreductase chain J [Legionella longbeachae NSW150] Length = 214 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 115/208 (55%), Gaps = 15/208 (7%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY+F+ +AI ++F+V+ NP+ SV L+ F +A L++L AEF+A+I ++VYVG Sbjct: 7 QVIFYIFAALAIGAAFMVIIQDNPVRSVLFLVLTFFASAALWILAEAEFLALILILVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV+ FLF++MML+ID+E+ + KR + L L++ + F E+ Sbjct: 67 AVMTLFLFVVMMLNIDVEIMKSHYKRYLPFGLILVALFIGLLMVSIPSGTFKKNVEVKGY 126 Query: 125 VFKG---------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +N E +G VLYT Y EI+ +LL+++I AI L+ R R Sbjct: 127 AINSQLLEVKQNGAEQQPLSNTEALGMVLYTDYLLAFEIAAALLLIAIISAITLVHRGPR 186 Query: 170 DIKRQDISKQLESNPDNSIVMVKVKSGK 197 KRQ++ +Q+ ++ + + ++ +K+ K Sbjct: 187 KSKRQNVKQQILTHKNQRVELINMKAEK 214 >gi|117927485|ref|YP_872036.1| NADH dehydrogenase subunit J [Acidothermus cellulolyticus 11B] gi|117647948|gb|ABK52050.1| NADH dehydrogenase subunit J [Acidothermus cellulolyticus 11B] Length = 275 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 91/206 (44%), Gaps = 12/206 (5%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ +A++++ VV R+ +++ L + A + A +A + ++VY Sbjct: 15 EAALFWVLGPIAVLAALGVVFARHTVHAALLLGGVMLIFAIFYAAQDAPLIAFVQIIVYT 74 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI----------GILAAELIVCASNFM 113 GAV++ FLF++M++ +D + RG + L I ++ Sbjct: 75 GAVMMLFLFVLMLIGVDTKERLVETLRGQRLATVFAGIGFLLLLLAGLGNAAIGTSAGLH 134 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + V G N+ + K+L+T+Y + E++ +L+ + +GA+VL R R + R Sbjct: 135 QANYPTNAVGQVQTGGNIYQVAKLLFTRYVFAFEVTSALLITAALGAMVLAHRQR--VGR 192 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 + ++ + G G+ Sbjct: 193 RRTQYEMMRDRFRRGAHPTPLPGPGV 218 >gi|257852696|gb|ACV71360.1| NADH dehydrogenase subunit 6 [Fusispermum laxiflorum] Length = 180 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 13/176 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLE 181 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNA 176 >gi|56791552|gb|AAW30314.1| NADH dehydrogenase subunit 6 [Amborella trichopoda] Length = 178 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A++S +V +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ V FLF++ Sbjct: 2 ALVSGLMVARAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSFLFVV 61 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSR 123 MM +I I R S IG I E+ N + + Sbjct: 62 MMFNIQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRKTTSLRYTVYAG 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 V N E +G +LYT Y+ + ILL++MIGAIV + ++RQD+ ++ Sbjct: 122 KVRSWTNSETLGNLLYTYYSVWFLVPSPILLVAMIGAIVQTMHSTTKVQRQDVFRRN 178 >gi|189426178|ref|YP_001953355.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter lovleyi SZ] gi|189422437|gb|ACD96835.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter lovleyi SZ] Length = 170 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 1/168 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + S+FF L + +AI+S+ +VVT +NPI S SL+ F A + +L A F+A + ++ Sbjct: 1 MDISSVFFALVTVVAIVSALMVVTCKNPINSALSLVLTFFCLATYYAMLNAPFMAAVQII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEG 119 VY GA++V +F IM+L+I ++ + + LGS I L + + Sbjct: 61 VYAGAIMVLIVFTIMLLNIRVDANKKGSHQIALGSVIGIATLLLSGLFLTRGKVSQPVGQ 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 S L+ + E IGKV++T + P E++ +LL++++GA++L R Sbjct: 121 ITSELINSKGHTELIGKVMFTDFLLPFEVTSILLLVAIVGAVILAKRK 168 >gi|159030036|emb|CAO90417.1| ndhG [Microcystis aeruginosa PCC 7806] Length = 198 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 3/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + I ++ VV + N +YS F L F++ +GL+LLL A+FVA +++Y Sbjct: 7 VQIVSFGILAALVIGTALGVVLLSNIVYSAFLLGGVFISISGLYLLLNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF IM+++ + ++ K+ ++ ++ L V S ++ + S Sbjct: 67 VGAINVLILFAIMLVNKQEDFSDIPKR--WIRQASTALVCVGLFVLLSTMVLITPWSISS 124 Query: 123 RLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 N IGK ++ + P E++ +LL++M+GAI+L R Sbjct: 125 TSPAVVTNTLVEIGKHFFSDFLLPFELASVLLLMAMVGAIILARR 169 >gi|133900428|gb|ABO41380.1| NADH dehydrogenase subunit 6 [Denhamia celastroides] Length = 181 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTKRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNAIDF 179 >gi|133900450|gb|ABO41391.1| NADH dehydrogenase subunit 6 [Euonymus alatus] Length = 181 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNAIDF 179 >gi|257852686|gb|ACV71355.1| NADH dehydrogenase subunit 6 [Paradrypetes subintegrifolia] Length = 178 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLFLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y +S ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|164420963|ref|YP_001648530.1| NADH dehydrogenase subunit 6 [Callyspongia plicifera] gi|158668102|gb|ABW76564.1| NADH dehydrogenase subunit 6 [Callyspongia plicifera] Length = 183 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 2/178 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F++F+F AIIS F V+TV +P+ SV LI F++A+ LF+LL EF+A I L+VYVGA+ Sbjct: 4 LFFIFAFGAIISGFKVITVFSPVASVLWLIMTFISASALFILLEVEFIAFIFLIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IMML++ V F IG++ I+ + + LV Sbjct: 64 AILFLFVIMMLNLTEMVIFSNAANYFSAGLIIGVVFLFEILTFLKGTIDGGR-MVQYLVV 122 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDISKQLESN 183 N+E +G+VLYT Y Y IS FILL++MIGAI+L H +D K QDI Q Sbjct: 123 PNPNIEVLGRVLYTDYYYLFIISSFILLVAMIGAIILTHDHIIQDRKGQDIFVQTSRQ 180 >gi|3914179|sp|O63849|NU6M_SARGL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|3132794|gb|AAC16383.1| NADH dehydrogenase subunit 6 [Sarcophyton glaucum] Length = 185 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 17/187 (9%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IM++ ++ + +I + + S + + ++ Sbjct: 64 AILFLFVIMLIQQPNKIDSQDHSHFLP-------IGLSVIFLFYSLLTNSPKYISNPVIG 116 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDI 176 N+ IG LYT Y + I+ +LL++MIGAI+L RQD+ Sbjct: 117 SRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDL 176 Query: 177 SKQLESN 183 Q+ Sbjct: 177 FLQISRE 183 >gi|257852726|gb|ACV71375.1| NADH dehydrogenase subunit 6 [Hua gabonii] Length = 180 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTIHRTTHGAVKRQDVFRRNAIDF 179 >gi|257852702|gb|ACV71363.1| NADH dehydrogenase subunit 6 [Brunellia acutangula] Length = 170 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 11/169 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM I I Sbjct: 1 NPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVYIGAIAVSFLFVVMMFHIQIAEIHE 60 Query: 87 RKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFKGNNVENIG 135 R S +G IL E+ N + + + V N+E +G Sbjct: 61 EVLRYLPVSGIMGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLG 120 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 +LYT Y+ +S ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 NLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 169 >gi|166368384|ref|YP_001660657.1| NADH dehydrogenase subunit J [Microcystis aeruginosa NIES-843] gi|166090757|dbj|BAG05465.1| NADH dehydrogenase subunit J [Microcystis aeruginosa NIES-843] Length = 198 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 90/165 (54%), Gaps = 3/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + I ++ VV + N +YS F L F++ +GL+LLL A+FVA +++Y Sbjct: 7 VQIVSFGILAALVIGTALGVVLLSNIVYSAFLLGGVFISISGLYLLLNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF IM+++ + ++ K+ ++ ++ L V S ++ + + Sbjct: 67 VGAINVLILFAIMLVNKQEDFSDIPKR--WIRQASTALVCVGLFVLLSTMVLITPWSIST 124 Query: 123 RLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 N IGK ++ + P E++ +LL++M+GAI+L R Sbjct: 125 TSPAVVTNTLVEIGKHFFSDFLLPFELASVLLLMAMVGAIILARR 169 >gi|110637778|ref|YP_677985.1| NADH dehydrogenase I subunit J [Cytophaga hutchinsonii ATCC 33406] gi|110280459|gb|ABG58645.1| NADH dehydrogenase subunit J [Cytophaga hutchinsonii ATCC 33406] Length = 169 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 95/168 (56%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ FY+ S + + S+ V+ +NP+YSV SL+ F G LLL A+F+A++ ++VY Sbjct: 1 MGNILFYILSGITLCSALFVILSKNPVYSVLSLVITFCCITGHMLLLSADFLAVVNIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IMML+++ A+P K + + + + ++S Sbjct: 61 AGAIMVLFLFVIMMLNLNDAAAQPNKPFLSKLAACVSGGLLLISLVYLLKGYQVGSIDMS 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +L + + +GK+L+ Q+ P EI+ + L +MIGA++L + +D Sbjct: 121 KLDHNFGSAQELGKILFNQFILPFEITSVLFLSAMIGAVMLGKKDLKD 168 >gi|126695516|ref|YP_001090402.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9301] gi|126542559|gb|ABO16801.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9301] Length = 199 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 59/188 (31%), Positives = 103/188 (54%), Gaps = 10/188 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + Q + F + S + +I + VV + + +YS F L F++ AGL+LLL A FVA ++ Sbjct: 5 ITTQIICFTILSLVILIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVL 64 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVA---EPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVGAV V +F IM+++ ++ + + +R S + +L+ + V +N S+ Sbjct: 65 VYVGAVNVLIIFAIMLVNKKEDLKPINDIKSRRIISTSICLTLLSLLIRVDLTNTWSLSS 124 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 ++ + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DIS Sbjct: 125 ----TQNSIGEESTIRIGEHLFSDYLLPFEVASVLLLMAMIGAIVLA---RRDVMSKDIS 177 Query: 178 KQLESNPD 185 L + + Sbjct: 178 TGLPVDQE 185 >gi|318040628|ref|ZP_07972584.1| NADH:ubiquinone oxidoreductase subunit J [Synechococcus sp. CB0101] Length = 199 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F + S + I + VV + N +YS F L F++ AGL+LLL A FVA ++V Sbjct: 6 STQLICFTVLSAVVAIGALGVVLLPNIVYSAFLLGGVFLSVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++A + G + A L + Sbjct: 66 YVGAVNVLILFAIMLVNKKEDLA--AIPGLAVRRLLSGAVCAGLFALLLRVAFTTPWATP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 IG+ L++ Y P E++ +LL++MIGAIVL R Sbjct: 124 GPEPVGEEATIRIGEHLFSDYLLPFELASVLLLMAMIGAIVLARR 168 >gi|218245873|ref|YP_002371244.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 8801] gi|257058921|ref|YP_003136809.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 8802] gi|218166351|gb|ACK65088.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 8801] gi|256589087|gb|ACU99973.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 8802] Length = 206 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 1/164 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + S + I ++ VV + N +YS F L F++ +G+++LL A+FVA +++Y Sbjct: 7 VQIVSFAILSVLVIAAALGVVLLSNIVYSAFLLGGVFISISGIYILLNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ E +R + I+ ++ +V + Sbjct: 67 VGAVNVLILFGIMLVN-KQEDFSTLPRRWIRQGATALVCVGIFILLSTMILVTPWSISTT 125 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 N + +GK ++ + P E++ +LL++M+GAI+L R Sbjct: 126 SPGVIENTIIELGKHFFSDFLLPFELASVLLLMAMVGAIILARR 169 >gi|81300154|ref|YP_400362.1| NADH dehydrogenase subunit J [Synechococcus elongatus PCC 7942] gi|81169035|gb|ABB57375.1| NADH dehydrogenase subunit 6 [Synechococcus elongatus PCC 7942] Length = 201 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 5/166 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + ++++ VV N +YS F L F++ AGL+LLL A FVA +++Y Sbjct: 7 VQLVTFIILTAGVVLAALGVVLSSNIVYSAFLLGGVFISIAGLYLLLNASFVAFAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + + G + +L + + V S ++ Sbjct: 67 VGAVNVLILFAIMLVNKREDFRPLKFNWLRKG---LTVLVCGGLFALLSLTVISTPWAVT 123 Query: 123 RLVFKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + IG+ ++ Y P E++ +LL++MIGAIVL R Sbjct: 124 PTPGASGDEAIYLIGEHFFSDYLLPFELASVLLLMAMIGAIVLARR 169 >gi|119513555|ref|ZP_01632572.1| NADH dehydrogenase subunit J [Nodularia spumigena CCY9414] gi|119461788|gb|EAW42808.1| NADH dehydrogenase subunit J [Nodularia spumigena CCY9414] Length = 221 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + + M I ++ VV N +YS F L F++ A ++LLL +FVA ++VY Sbjct: 24 VQFVALGILGVMMIGAALGVVLFSNVVYSAFMLGGVFISMAAIYLLLNGDFVAAAQVLVY 83 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + A P G + + + + Sbjct: 84 VGAVNVLILFAIMLVNKREDFA-PFPSTGLRKVLTAVVSLGLFGLLSVMVLGTPWAYSTP 142 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V +++ IG+ +T + P E++ +LL++M+GAI+L R Sbjct: 143 AAVAPESSIVVIGEHFFTDFLLPFELASVLLLIAMVGAIILARRE 187 >gi|94968320|ref|YP_590368.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Koribacter versatilis Ellin345] gi|94550370|gb|ABF40294.1| NADH dehydrogenase subunit J [Candidatus Koribacter versatilis Ellin345] Length = 169 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 93/162 (57%), Gaps = 1/162 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 FFY + +++ S+ V+ +N ++S LIF + AGL+L+L A FVA + +++Y G Sbjct: 8 FFFYFLAALSVGSALGVILRKNAVHSAIFLIFTLLAQAGLYLMLYAPFVAGVQIILYAGG 67 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V FLF+IM+++++ + E + + +L + L +++ + ++ Sbjct: 68 IMVLFLFVIMLVNLERSLKEEQFNKQWLAGSAVAALFGVMLLLIYRNGGGTFP-STRAIL 126 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +N ++IG +LY Y P E++ +LL++++GA+V+ + Sbjct: 127 PEASNTQDIGVMLYRNYMLPFEVASLLLLVAIVGAVVMAKKR 168 >gi|257852684|gb|ACV71354.1| NADH dehydrogenase subunit 6 [Cassipourea lanceolata] Length = 178 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLFLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDIFRRNAIDF 177 >gi|123967713|ref|YP_001008571.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. AS9601] gi|123197823|gb|ABM69464.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. AS9601] Length = 199 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 10/188 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + Q + F + S + +I + VV + + +YS F L F++ AGL+LLL A FVA ++ Sbjct: 5 ITTQIICFTVLSLVILIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVL 64 Query: 61 VYVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVGAV V +F IM+++ + +++ + +R S + +L+ + V +N S Sbjct: 65 VYVGAVNVLIIFAIMLVNKKEDLKPISDIKSRRIISTSICLTLLSLLIRVDLTNVWRLSN 124 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DIS Sbjct: 125 P----QNSIGEESTIRIGEHLFSDYLLPFEVASVLLLMAMIGAIVLA---RRDVMSKDIS 177 Query: 178 KQLESNPD 185 L + + Sbjct: 178 TGLPVDQE 185 >gi|56750217|ref|YP_170918.1| NADH dehydrogenase subunit J [Synechococcus elongatus PCC 6301] gi|56685176|dbj|BAD78398.1| NADH dehydrogenase subunit 6 [Synechococcus elongatus PCC 6301] Length = 201 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 5/166 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + ++++ VV N +YS F L AF++ AGL+LLL A FVA +++Y Sbjct: 7 VQLVTFIILTAGVVLAALGVVLSSNIVYSAFLLGGAFISIAGLYLLLNASFVAFAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + + G + +L + + V S ++ Sbjct: 67 VGAVNVLILFAIMLVNKREDFRPLKFNWLRKG---LTVLVCGGLFALLSLTVISTPWAVT 123 Query: 123 RLVFKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + IG+ ++ Y P E++ +LL++MIGAIVL R Sbjct: 124 PTPGASGDEAIYLIGEHFFSDYLLPFELASVLLLMAMIGAIVLARR 169 >gi|133900526|gb|ABO41429.1| NADH dehydrogenase subunit 6 [Pimelodendron zoanthogyne] Length = 167 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 82/167 (49%), Gaps = 11/167 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VVY+GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVYIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG IL E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLSYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 167 >gi|257852718|gb|ACV71371.1| NADH dehydrogenase subunit 6 [Stackhousia minima] Length = 180 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 13/176 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E++ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLE 181 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNA 176 >gi|123965422|ref|YP_001010503.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9515] gi|123199788|gb|ABM71396.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9515] Length = 199 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 10/187 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F + S + I+ + V+ + + +YS F L F++ AGL+LLL A FVA ++V Sbjct: 6 TTQIICFSVLSLVVIVGALGVILLDSIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVA---EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 YVGAV V +F IM+++ ++ +R S + +L+ + V SN + Sbjct: 66 YVGAVNVLIIFAIMLVNKKEDLKPINNINSRRIISTSICLTLLSLLIRVDLSNVWSLADP 125 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DIS Sbjct: 126 NSS----IGEESTIRIGEHLFSDYLLPFEVASVLLLMAMIGAIVLA---RRDVFNKDIST 178 Query: 179 QLESNPD 185 L + + Sbjct: 179 GLPVDQE 185 >gi|157412515|ref|YP_001483381.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9215] gi|254525620|ref|ZP_05137672.1| NADH dehydrogenase i chain 6 (or j) [Prochlorococcus marinus str. MIT 9202] gi|157387090|gb|ABV49795.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9215] gi|221537044|gb|EEE39497.1| NADH dehydrogenase i chain 6 (or j) [Prochlorococcus marinus str. MIT 9202] Length = 199 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 10/188 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + Q + F + S + +I + VV + + +YS F L F++ AGL+LLL A FVA ++ Sbjct: 5 ITTQFICFTVLSLVVLIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVL 64 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVA---EPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVGAV V +F IM+++ ++ + + +R S + +L+ + V +N S Sbjct: 65 VYVGAVNVLIIFAIMLVNKKEDLKPINDIKSRRIISTSICLTLLSLLIRVDLTNVWNLS- 123 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DIS Sbjct: 124 ---IPENSIGEESTIRIGEHLFSDYLLPFEVASVLLLMAMIGAIVLA---RRDVMSKDIS 177 Query: 178 KQLESNPD 185 L + + Sbjct: 178 TGLPVDQE 185 >gi|75908928|ref|YP_323224.1| NADH dehydrogenase subunit J [Anabaena variabilis ATCC 29413] gi|75702653|gb|ABA22329.1| NADH dehydrogenase subunit J [Anabaena variabilis ATCC 29413] Length = 202 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 96/195 (49%), Gaps = 3/195 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M I ++ VV + +YS F L F++ AG++LLL +FVA ++VY Sbjct: 7 VQVVSFGILATMLIGTALGVVLASSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + + I++ L S ++ + + Sbjct: 67 VGAVNVLILFAIMLVNKRQDFIP--YPSAGIRKILTAIVSVGLFALLSTMVLATPWAYST 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDISKQLE 181 ++ IG+ ++ + P E++ +LL++M+GAI+L R ++ D+ + + Sbjct: 125 TPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARREYLPEVTPSDLPQTVL 184 Query: 182 SNPDNSIVMVKVKSG 196 + P+ +V S Sbjct: 185 TLPERPRELVGAGSE 199 >gi|133900550|gb|ABO41441.1| NADH dehydrogenase subunit 6 [Sapria himalayana] Length = 180 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRETSGLLLLLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ N + + + + Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFLLDNESIPLLPTQRKTTSLGYTVYAGNIRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + +LL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLLLLVAMIGAIVLTMHRTTHSAVKRQDLFRRNAIDF 179 >gi|149909812|ref|ZP_01898463.1| putative oxidoreductase [Moritella sp. PE36] gi|149807144|gb|EDM67100.1| putative oxidoreductase [Moritella sp. PE36] Length = 190 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 6/176 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FF L + +AI + LVV RNPI+S SL+ FV A LF+LLG+ F+A+I L VY Sbjct: 1 MEQQFFILLALVAIGTGLLVVVARNPIHSALSLVACFVQIAALFVLLGSPFLAVIQLFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGA++V FLF+IMMLD+ E F+ I + A L + + S L Sbjct: 61 VGAIMVLFLFVIMMLDVRKEAHGRFINNSRFIQKGAIPAIVALLALATELLFLLSQSSRL 120 Query: 122 -----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 ++ V + + L+ + P E++ ILL+++IGA+VL + + K Sbjct: 121 HAVMTTQSVIGDEPTKQLSLTLFRDFLLPFEVASVILLVALIGAVVLAQSNGTNHK 176 >gi|254431361|ref|ZP_05045064.1| NAD(P)H-quinone oxidoreductase chain 6 [Cyanobium sp. PCC 7001] gi|197625814|gb|EDY38373.1| NAD(P)H-quinone oxidoreductase chain 6 [Cyanobium sp. PCC 7001] Length = 200 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F S ++ + VV + N +YS F L F++ AGL+L+L A FVA ++V Sbjct: 6 TTQFICFAALSATLVLGALGVVLLPNIVYSAFLLAGVFLSVAGLYLMLNASFVAAAQILV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ +++ K L G++ L V V + Sbjct: 66 YVGAVNVLILFAIMLVNKREDLS--VIKGLALRRALSGLVCGGLFVLLIRVAVTTPWALP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 IG+ L++ Y P E++ +LL++MIGAIVL R Sbjct: 124 GPTPVGEEATIRIGEHLFSDYLLPFELASVLLLMAMIGAIVLARR 168 >gi|33866802|ref|NP_898361.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 8102] gi|33639403|emb|CAE08787.1| NADH dehydrogenase I chain 6 (or J) [Synechococcus sp. WH 8102] Length = 200 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + S + + + VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 TTELICFLVLSAVVVTGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ V LF IM+++ ++ + G + L+ ++ + Sbjct: 66 YVGAINVLILFAIMLVNKREDLKAIAGLN--VRRAVSGGVCLGLLALLVRVVLTTPWSLP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 GPAAVGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVLARR 168 >gi|257054401|ref|YP_003132233.1| NADH dehydrogenase subunit J [Saccharomonospora viridis DSM 43017] gi|256584273|gb|ACU95406.1| NADH dehydrogenase subunit J [Saccharomonospora viridis DSM 43017] Length = 304 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 89/203 (43%), Gaps = 6/203 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+ + +V RN ++S L+ ++ L+L A+F+ ++V Sbjct: 27 TGEAIAFWILGPLALAGALGMVFARNAVHSALWLVLTMLSLGMLYLAQQAQFLGFTQIIV 86 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRG---FLGSFFIGILAAELIVCASNFMVFSAE 118 Y GA+++ FLF++M++ + + RG G +G+ + Sbjct: 87 YTGAIMMLFLFVLMLVGRESSDSVVEVLRGQRLMAGLVGVGVAGLLAAALTRAIADVTPA 146 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL--MLRHRRDIKRQDI 176 L G +G++++T Y +P E++ +L+ + + +VL RH + KR Sbjct: 147 PLLDPWSADGGGAGGLGRLIFTDYLFPFELTAALLITAAMAGMVLSFTSRHVKGGKRSQ- 205 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 + + + K G G+ Sbjct: 206 RELVIARFRGEYERPSPKPGPGV 228 >gi|133900400|gb|ABO41366.1| NADH dehydrogenase subunit 6 [Bruguiera gymnorhiza] Length = 179 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F N +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRNTSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTYMRYTVYAVKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQ+I ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQNIFRRNAIDF 177 >gi|257852586|gb|ACV71305.1| NADH dehydrogenase subunit 6 [Endodesmia calophylloides] Length = 180 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFSILVFRDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTAYLKYTIYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y + ILL++MIGAIVL + +KRQDI ++ + Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTHGAVKRQDIFRRNAIDF 179 >gi|145932445|ref|YP_001165357.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum] gi|110169643|gb|ABG54108.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum] gi|188484472|gb|ACD50861.1| NADH dehydrogenase subunit 6 [Phytophthora ramorum] Length = 236 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 39/231 (16%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++FFY FS +A+ S+ V+ N IYS F LI F N+ GL L+ EF++++ ++ Sbjct: 1 MNFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60 Query: 61 VYVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 +YVGA+ V FLF+IMMLD++ I+ + G+L F+ L VF++ Sbjct: 61 IYVGAITVLFLFVIMMLDVNILIDKNKINNNLGYLPIIFLISFIFFLETFIMFSKVFTSY 120 Query: 119 GEL-------------------------------------SRLVFKGNNVENIGKVLYTQ 141 L V N+E IG++LY+ Sbjct: 121 YHLINNSFFNKEVNTLFFFKDSMKGTFEIFVDVKPFLKNFINQVDTITNIETIGQILYSY 180 Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 YA+ +G ILL+++IGA+ L + +R +Q I KQL + +I V Sbjct: 181 YAFFFLAAGIILLIALIGAVTLTKKEKRKNFKQKIYKQLSRDSLKAIFNVN 231 >gi|56791562|gb|AAW30319.1| NADH dehydrogenase subunit 6 [Liriodendron tulipifera] Length = 177 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 S A++S +V +NP++ V I F + +GL LLLG +F AMI+ VV++GA+ F Sbjct: 1 LSSPALVSGLMVARAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAASF 60 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----- 124 LF++MM +I I R S IG IL E+ N + + Sbjct: 61 LFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFVLDNETIPLLPTHRNTTSLRYT 120 Query: 125 -----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ Sbjct: 121 VHAGKVRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDV 177 >gi|78778546|ref|YP_396658.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9312] gi|78712045|gb|ABB49222.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9312] Length = 199 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 10/187 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F + S + +I + VV + + +YS F L F++ AGL+LLL A FVA ++V Sbjct: 6 TTQIICFIVLSLVVLIGALGVVLLESIVYSAFLLGGVFMSVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVA---EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 YVGAV V +F IM+++ ++ + +R S + +L+ + V +N ++ Sbjct: 66 YVGAVNVLIIFAIMLVNKKEDLKPINNIKSRRIISTSICLTLLSLLIRVDLTNVWRLASP 125 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + IG+ L++ Y P E++ +LL++MIGAIVL RRD+ +DIS Sbjct: 126 ----ENSIGEESTIRIGEHLFSDYLLPFELASVLLLMAMIGAIVLA---RRDVMNKDIST 178 Query: 179 QLESNPD 185 L + + Sbjct: 179 GLPVDQE 185 >gi|78183864|ref|YP_376298.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9902] gi|116071524|ref|ZP_01468792.1| NADH dehydrogenase subunit J [Synechococcus sp. BL107] gi|78168158|gb|ABB25255.1| NADH dehydrogenase I chain 6 [Synechococcus sp. CC9902] gi|116065147|gb|EAU70905.1| NADH dehydrogenase subunit J [Synechococcus sp. BL107] Length = 200 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + S + + + VV + N +YS F L F+ AGL+LLL A FVA +++ Sbjct: 6 STELICFLVLSAVVVTGALGVVLLSNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVMI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ V LF IM+++ ++ G + L+ +V + Sbjct: 66 YVGAINVLILFAIMLVNKREDLKAIANLTT--RRIVSGGVCLGLLALLVRVVVTTPWSLP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 GPAAVGEEATARIGEHLFTDYLLPFELASVLLLMAMIGAIVLARR 168 >gi|56791576|gb|AAW30326.1| NADH dehydrogenase subunit 6 [Zamia integrifolia] Length = 181 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 11/181 (6%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 S A++ +VV NP++ V I F N +GL LL G + AMI+ VV++GA+ F Sbjct: 1 LSSPALVPGSMVVRAENPVHPVSFPIPVFRNTSGLLLLSGPDLSAMISPVVHIGAIAALF 60 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----- 124 ++MML+I I + R S IG IL E+ + + N + S + Sbjct: 61 SSVVMMLNIKIAEIHEKVSRYSPVSGIIGPILRWEMFLISDNDHIPSLPTYIGTTSLRYT 120 Query: 125 -----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 + N E +G +L+T Y+ +S + L++MIGAIVL + +KRQD+ ++ Sbjct: 121 VHAGEIQSWTNSETLGNLLHTYYSVRFLVSSPVPLVAMIGAIVLTMHRTTKVKRQDVFRR 180 Query: 180 L 180 Sbjct: 181 N 181 >gi|109156446|ref|YP_654278.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia bipinnata] gi|108513891|gb|ABF93174.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia bipinnata] Length = 185 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 17/187 (9%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFIIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAIMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IM++ +V + +I + + S+ + ++ Sbjct: 64 AILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSSRYISNPVIG 116 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDI 176 N+ IG LYT Y + I+ +LL++MIGAI+L RQD+ Sbjct: 117 SRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDL 176 Query: 177 SKQLESN 183 Q+ Sbjct: 177 FLQISRE 183 >gi|56791556|gb|AAW30316.1| NADH dehydrogenase subunit 6 [Calycanthus floridus] Length = 178 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 11/178 (6%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 S A++S +VV +NP++ V I F + +GL LLLG +F AMI+LVV++GA+ F Sbjct: 1 LSSPALVSGLMVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISLVVHIGAIAASF 60 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----- 124 LF++MM I I R S IG I E+ N + + Sbjct: 61 LFVVMMFHIQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYT 120 Query: 125 -----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 V N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ Sbjct: 121 VHAGKVRSWTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVF 178 >gi|257852716|gb|ACV71370.1| NADH dehydrogenase subunit 6 [Siphonodon celastrineus] Length = 180 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRDISGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ + + Sbjct: 121 WTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFPRNAIDF 179 >gi|170077546|ref|YP_001734184.1| NADH dehydrogenase subunit J [Synechococcus sp. PCC 7002] gi|22651980|gb|AAN03535.1|AF381034_3 NADH dehydrogenase subunit G [Synechococcus sp. PCC 7002] gi|169885215|gb|ACA98928.1| NADH dehydrogenase subunit G [Synechococcus sp. PCC 7002] Length = 205 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 1/164 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M + S+ VV N +YS F L F++ +G ++LL A+FVA +++Y Sbjct: 7 VQIVSFVILTVMMLGSALGVVLFENIVYSAFLLGGVFISISGFYILLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF IM+++ + ++ R + + + +V E Sbjct: 67 VGAINVLILFAIMLVNKKEDFSQ-MPGRLLRQGATALVCLGLFALLGTMVLVTPWELSTI 125 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 GN+V I K ++ + P E++ +LL++M+GAI+L R Sbjct: 126 SPAAVGNSVVAIAKHFFSDFLLPFELASVLLLIAMVGAIILARR 169 >gi|78213918|ref|YP_382697.1| NADH dehydrogenase subunit J [Synechococcus sp. CC9605] gi|78198377|gb|ABB36142.1| NADH dehydrogenase I chain 6 (or J) [Synechococcus sp. CC9605] Length = 199 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + S + +I + VV + N +YS F L F AGL+LLL A FVAM ++V Sbjct: 6 TTELICFLVLSAVVVIGALGVVLLSNIVYSAFLLGGVFTAVAGLYLLLNASFVAMAQILV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ V LF IM+++ ++ + A L+ +V + Sbjct: 66 YVGAINVLILFAIMLVNKREDLKAIANLTT--RRVVSAGVCAGLMALLVRVVVTTPWSLP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 GPVAVGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVLARR 168 >gi|33864283|ref|NP_895843.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9313] gi|33641063|emb|CAE22192.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9313] Length = 200 Score = 130 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 4/193 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + + ++ S VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 STELICFLVLGAVVVLGSLGVVLLGNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++ + G + A L V ++ + Sbjct: 66 YVGAVNVLILFAIMLVNKREDLKPIEGL--PIRRLLSGGVCAGLFVLFFRVVITTPWAVP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQ 179 E IG+ L+T Y P E++ +LL++MIGAIVL R D+ D Q Sbjct: 124 GPAAIGVGATERIGEHLFTDYLLPFELASVLLLMAMIGAIVLARRDVLETDVGTGDAVNQ 183 Query: 180 LESNPDNSIVMVK 192 + ++V Sbjct: 184 GLIEKAQTPLLVD 196 >gi|124024376|ref|YP_001018683.1| NADH dehydrogenase subunit J [Prochlorococcus marinus str. MIT 9303] gi|123964662|gb|ABM79418.1| putative NADH Dehydrogenase (complex I) subunit (chain 6) [Prochlorococcus marinus str. MIT 9303] Length = 200 Score = 130 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 4/193 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + + ++ S VV + N +YS F L F+ AGL+LLL A FVA ++V Sbjct: 6 STELICFLVLGAVVVLGSLGVVLLGNIVYSAFLLGGVFMAVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++ + G + A L V ++ + Sbjct: 66 YVGAVNVLILFAIMLVNKREDLKPIEGL--PIRRLLSGGVCAGLFVLFFRVVITTPWAVP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQ 179 E IG+ L+T Y P E++ +LL++MIGAIVL R D+ D Q Sbjct: 124 GPAAIGVGATERIGEHLFTDYLLPFELASVLLLMAMIGAIVLARRDVLETDVGTGDAVNQ 183 Query: 180 LESNPDNSIVMVK 192 + ++V Sbjct: 184 GLIEKARTPLLVD 196 >gi|284039951|ref|YP_003389881.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma linguale DSM 74] gi|283819244|gb|ADB41082.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma linguale DSM 74] Length = 184 Score = 130 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ VVT RNPIYSV +LI F +G ++LL A+F+A + ++VY GA++V FLF IM L Sbjct: 28 SAIGVVTARNPIYSVLALIATFFCLSGHYVLLNAQFLAAVNIIVYAGAIMVLFLFTIMFL 87 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-ELSRLVFKGNNVENIGK 136 ++ E E + + S +G + +++ + K VEN+G+ Sbjct: 88 NLRKEDEESKTNLTKMASVVVGGMLMIMLITIFRAKSAQVPTVSATSFSAKTGLVENLGQ 147 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +LY+ Y P E++ + L++M+GA++L R Sbjct: 148 LLYSDYILPFELASVLFLVAMVGAVMLGKRE 178 >gi|218900420|ref|YP_002448831.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus G9842] gi|218543477|gb|ACK95871.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus G9842] Length = 174 Score = 130 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 93/170 (54%), Gaps = 1/170 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + ++ Sbjct: 1 MNGEFVAFFILSLTAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ + E R ++ FF + ++ A N + F+ E Sbjct: 61 LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L NN IG +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 120 QGSLPLHENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169 >gi|37520222|ref|NP_923599.1| NADH dehydrogenase subunit J [Gloeobacter violaceus PCC 7421] gi|35211215|dbj|BAC88594.1| NADH dehydrogenase subunit 6 [Gloeobacter violaceus PCC 7421] Length = 197 Score = 130 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 7/166 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + + + VV +R+ ++S F L F+ AAGL++LL A+FVA +++Y Sbjct: 7 VQLVSFIILTAIVLGGAAGVVLLRSMVHSAFLLGLVFIGAAGLYVLLNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V LF IM+++ I P R + L A L VC +F ++ Sbjct: 67 VGAVNVLILFAIMLVNKRIPTDRPAFSPRNAVTGLVCAGLFALLAVC-----IFQVPWQI 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V N V IGK ++++ P E++ +LLL+M+GAI+L R Sbjct: 122 QEPVA-MNTVVEIGKRFFSEFLLPFEVASVLLLLAMVGAIILAQRE 166 >gi|327398406|ref|YP_004339275.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hippea maritima DSM 10411] gi|327181035|gb|AEA33216.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hippea maritima DSM 10411] Length = 167 Score = 130 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 86/164 (52%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+++ FY+ + + + + V+ +NP + ++ AF AGLF++L A+F AM+ L+VY Sbjct: 1 MEAIVFYIIAILTVGGALGVLLSKNPYRAALFMVLAFFGIAGLFVMLHAQFNAMLQLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+ V +M+++ R + + FIGI ++ + Sbjct: 61 AGAIAVMITLTMMVMNRRTLEGLKRFNSQWYWAAFIGIGLLADLIALAYKFKIDLSNAGK 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L G+N + IG+VL+ Y P EI+ ILL++++GA+VL R Sbjct: 121 NLALGGSNTKLIGEVLFKHYLLPFEITAIILLVALLGAVVLTKR 164 >gi|17227721|ref|NP_484269.1| NADH dehydrogenase subunit J [Nostoc sp. PCC 7120] gi|28201839|sp|Q8Z075|NU6C_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase chain 6; AltName: Full=NAD(P)H dehydrogenase I, chain 6; AltName: Full=NDH-1, chain 6; AltName: Full=NDH-G gi|17135203|dbj|BAB77749.1| NADH dehydrogenase subunit 6 [Nostoc sp. PCC 7120] Length = 202 Score = 130 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 2/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M I ++ VV + +YS F L F++ AG++LLL +FVA ++VY Sbjct: 7 VQVVSFGILATMLIGTALGVVLATSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + + I++ L S ++ + + Sbjct: 67 VGAVNVLILFAIMLVNKRQDFTP--YPSAGIRKVLTAIVSVGLFALLSTMVLATPWAYST 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 ++ IG+ ++ + P E++ +LL++M+GAI+L R Sbjct: 125 TPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARRE 169 >gi|87301842|ref|ZP_01084676.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 5701] gi|87283410|gb|EAQ75365.1| NADH dehydrogenase subunit J [Synechococcus sp. WH 5701] Length = 208 Score = 130 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V Q + F S ++ S VV + N +YS F L F++ AGL+LLL A FVA ++V Sbjct: 6 VTQLVCFIALSLTLVLGSLGVVLLPNIVYSAFLLAGVFLSVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ +AE L G + L + + + Sbjct: 66 YVGAVNVLILFAIMLVNKKEAMAE--IPGLLLRRLLSGAVCLGLFLLILRVDLTTPWAVP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + IG L++ Y P E++ +LL++MIGAIVL R Sbjct: 124 GPTPLGDDATVLIGIHLFSDYLLPFELASVLLLMAMIGAIVLARR 168 >gi|75764475|ref|ZP_00743962.1| NADH-quinone oxidoreductase chain J [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488038|gb|EAO51767.1| NADH-quinone oxidoreductase chain J [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 174 Score = 130 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 93/170 (54%), Gaps = 1/170 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + ++ Sbjct: 1 MNGEFVAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ + E R ++ FF + ++ A N + F+ E Sbjct: 61 LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L NN IG +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 120 QGSLPLHENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169 >gi|262200412|ref|YP_003271620.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gordonia bronchialis DSM 43247] gi|262083759|gb|ACY19727.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gordonia bronchialis DSM 43247] Length = 269 Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 5/172 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A++ + VV +YS L + A ++ GA F+ ++ +VV Sbjct: 14 TGEAVQFWVLGGVAVLGALGVVFATKAVYSAIFLATTMIILAIFYVAQGALFLGVVQVVV 73 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----LGSFFIGILAAELIVCASNFMVFS 116 Y GAV++ FLF++M++ +D + RG + GIL I AS Sbjct: 74 YTGAVMMLFLFVLMLIGVDSSDSLVETLRGQRLAAAVIGLGFGILLIAGIGTASVATFAG 133 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 A NVE I ++++ QY + E++G +L+ + +GA+VL R R Sbjct: 134 APAAGGSSTAGDGNVEAIAELIFVQYLWAFELTGALLITATLGAMVLAHRER 185 >gi|73667097|ref|YP_303113.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia canis str. Jake] gi|72394238|gb|AAZ68515.1| NADH dehydrogenase subunit J [Ehrlichia canis str. Jake] Length = 200 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 7/197 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F+ F+ + ++SS VV + NP+YSV LI F ++ LF+LLGAE +AM+ ++VY Sbjct: 1 MVYFLFHFFAALIVLSSVAVVYISNPVYSVLFLILTFFISSTLFILLGAELIAMLVIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLDI+ R K F IG+L ++ F++ + Sbjct: 61 VGAVAVLFLFVVMMLDINYS----RFKNVFTKYLAIGLLCGVILFVNIVFIIRQSATTEL 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQ 179 ++ V +NV IG ++YT+Y Y +SG +LL+S+IGA+VL LR + + RQ+I+ Q Sbjct: 117 VTESVQYVSNVVAIGNLIYTEYMYIFHLSGILLLISIIGALVLTLRAKNSSVHRQNINMQ 176 Query: 180 LESNPDNSIVMVKVKSG 196 + V VKVK G Sbjct: 177 INRPSSIKYVSVKVKEG 193 >gi|260436292|ref|ZP_05790262.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 8109] gi|260414166|gb|EEX07462.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. WH 8109] Length = 199 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + S + +I + VV + N +YS F L F AGL+LLL A FVAM ++V Sbjct: 6 TTELICFLVLSAVVVIGALGVVLLSNIVYSAFLLGGVFTAVAGLYLLLNASFVAMAQILV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ V LF IM+++ ++ + L+ +V + Sbjct: 66 YVGAINVLILFAIMLVNKREDLKAIANLTT--RRVVSAGVCVGLLALLVRVVVTTPWSLP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 IG+ L+T Y P E++ +LL++MIGAIVL R Sbjct: 124 GPAAVGEEATARIGEHLFTDYLLPFEVASVLLLMAMIGAIVLARR 168 >gi|30023327|ref|NP_834958.1| NADH dehydrogenase subunit J [Bacillus cereus ATCC 14579] gi|218235796|ref|YP_002370069.1| NADH dehydrogenase subunit J [Bacillus cereus B4264] gi|296505721|ref|YP_003667421.1| NADH dehydrogenase subunit J [Bacillus thuringiensis BMB171] gi|29898888|gb|AAP12159.1| NADH-quinone oxidoreductase chain J [Bacillus cereus ATCC 14579] gi|218163753|gb|ACK63745.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus B4264] gi|296326773|gb|ADH09701.1| NADH dehydrogenase subunit J [Bacillus thuringiensis BMB171] gi|326943092|gb|AEA18988.1| NADH dehydrogenase subunit J [Bacillus thuringiensis serovar chinensis CT-43] Length = 174 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 93/170 (54%), Gaps = 1/170 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + ++ Sbjct: 1 MNGEFVAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ + E R ++ FF + ++ A N + F+ E Sbjct: 61 LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANEST 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L NN IG +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 120 QGSLPLHENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169 >gi|326382754|ref|ZP_08204444.1| NADH:ubiquinone oxidoreductase subunit J [Gordonia neofelifaecis NRRL B-59395] gi|326198344|gb|EGD55528.1| NADH:ubiquinone oxidoreductase subunit J [Gordonia neofelifaecis NRRL B-59395] Length = 282 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 15/208 (7%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F++ + +I + VV +YS L + A +++ GA F+ ++ +VVY Sbjct: 17 EAVTFWVLGAVVVIGALGVVLSPKAVYSAVFLAMTMIILAVFYVMQGALFLGVVQVVVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASN---FMVFSAEG 119 GAV++ FLF++M++ +D + RG L + +G+ A L++ A VF Sbjct: 77 GAVMMLFLFVLMLIGVDSSESLVESIRGQRLAAAGLGLGFAVLLIAAIGSATLAVFVGAP 136 Query: 120 ELSRLVFKGN-----------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + S G N+ + ++++ +Y + E++G +L+ + +GA+VL R R Sbjct: 137 DFSHGTAPGGPSTELRTGGNQNIRALAELIFGRYLWAFELTGALLITATLGAMVLAHRQR 196 Query: 169 RDIKRQDISKQLESNPDNSIVMVKVKSG 196 + + +E + G Sbjct: 197 FGPRNGQREQSVERFSSGAHATPLPPPG 224 >gi|257852750|gb|ACV71387.1| NADH dehydrogenase subunit 6 [Calycanthus floridus] Length = 178 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++ V I F + +GL LLLG +F AMI+LVV++GA+ FLF++MM Sbjct: 1 GLMVVRAKNPVHPVSFPIPVFRDTSGLLLLLGLDFSAMISLVVHIGAIAASFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG++ E+ N + + V Sbjct: 61 IQIAETHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVHAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 N+E +G +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYSVRFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRRNAID 176 >gi|261420755|ref|YP_003254437.1| NADH dehydrogenase subunit J [Geobacillus sp. Y412MC61] gi|319768425|ref|YP_004133926.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. Y412MC52] gi|261377212|gb|ACX79955.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. Y412MC61] gi|317113291|gb|ADU95783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. Y412MC52] Length = 173 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 1/172 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F+L + AI ++ + N ++ V +L+ FV AGL++LL AEFVA++ ++ Sbjct: 1 MSGTDIAFFLLALAAIAGGVTMLQLTNVVHMVIALVMTFVGIAGLYVLLSAEFVAVVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + LF IM+ + E + G + L+ A F + + Sbjct: 61 IYSGAITIIMLFAIMLTRHHTDERERQTTGGVWHKA-VAALSVIAFGLAVYFGIRQLDFG 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 G+N + IGK LY+ Y P EI ILL+++IGAIVL + + + Sbjct: 120 ADGSALSGDNAKAIGKSLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAE 171 >gi|68171482|ref|ZP_00544866.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia chaffeensis str. Sapulpa] gi|88658094|ref|YP_507364.1| NADH dehydrogenase I, J subunit [Ehrlichia chaffeensis str. Arkansas] gi|67999088|gb|EAM85755.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ehrlichia chaffeensis str. Sapulpa] gi|88599551|gb|ABD45020.1| NADH dehydrogenase I, J subunit [Ehrlichia chaffeensis str. Arkansas] Length = 200 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 76/200 (38%), Positives = 120/200 (60%), Gaps = 9/200 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F+ F+ + ++SS VV V NP+YSV LI F ++ LF+LLGAE +AM+ ++VY Sbjct: 1 MIYFLFHFFAVLIVLSSISVVYVSNPVYSVLFLILTFFISSTLFILLGAELIAMLVIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 VGAV V FLF++MMLDI+ R K GF IG+L ++ F++ + Sbjct: 61 VGAVAVLFLFVVMMLDINYS----RLKSGFTKYLAIGLLCGMILFVNIVFVIKQSATTEL 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDISKQ 179 ++ V +NV IG ++YT+Y Y +SG +LL+S+IG++VL LR + ++ RQ + Q Sbjct: 117 VTGSVSYVSNVIAIGNLIYTKYMYVFHLSGILLLISIIGSLVLTLRTKNGNVYRQSVGAQ 176 Query: 180 LESNPDNSIVMVKVKSGKGI 199 + N +++ V VK +G+ Sbjct: 177 V--NRSSTVKYVNVKVRQGV 194 >gi|186685675|ref|YP_001868871.1| NADH dehydrogenase subunit J [Nostoc punctiforme PCC 73102] gi|186468127|gb|ACC83928.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nostoc punctiforme PCC 73102] Length = 204 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 98/197 (49%), Gaps = 5/197 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + + M I ++ VV + +YS F L F++ AG++LLL +FVA +++Y Sbjct: 7 VQLISLGILGVMMIGAAIGVVLFSSIVYSAFMLGGVFISMAGIYLLLNGDFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121 VGAV V LF IM+++ + ++ G+++ L S ++ + Sbjct: 67 VGAVNVLILFAIMLVNKRQDFV--AFPNSWVRKLLTGLVSVGLFGLLSTMVLATPWAYST 124 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDIKRQDISKQ 179 + +V +++ IG+ +T + P E++ +LL++M+GAI+L R + R ++ + Sbjct: 125 TPVVGGESSIVVIGEHFFTDFLLPFELASILLLIAMVGAIILARREYLPDQLTRSNVGQT 184 Query: 180 LESNPDNSIVMVKVKSG 196 + + + +V S Sbjct: 185 VLTLQERPRELVSTTSE 201 >gi|119485497|ref|ZP_01619825.1| NADH dehydrogenase subunit J [Lyngbya sp. PCC 8106] gi|119457253|gb|EAW38379.1| NADH dehydrogenase subunit J [Lyngbya sp. PCC 8106] Length = 232 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 87/166 (52%), Gaps = 4/166 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F L + M + + VV + N +YS F L F++ AGL++LL A+FVA +++Y Sbjct: 31 VQIISFGLLTVMMLGGALGVVLLENIVYSAFLLGGVFMSMAGLYILLNADFVAAAQVLIY 90 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VG+V V LF IM+++ ++ ++ + L S ++ + + Sbjct: 91 VGSVNVLILFGIMLVNKQESFK--ALPNPWVRKGATALVCSGLFALLSTMVLSTPWMSQA 148 Query: 123 RL--VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + +++ IG+ +T + P E++ LL++M+GAI+L R Sbjct: 149 TVSVPPEESSIMIIGQHFFTDFLLPFELASVFLLMAMVGAIILARR 194 >gi|206970330|ref|ZP_03231283.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH1134] gi|206734907|gb|EDZ52076.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH1134] Length = 174 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 93/170 (54%), Gaps = 1/170 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + ++ Sbjct: 1 MNGEFVAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ + E R ++ FF + ++ A N + F+ E Sbjct: 61 LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVGFANEST 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L NN IG +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 120 QGSLPLHENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169 >gi|163942982|ref|YP_001647866.1| NADH dehydrogenase subunit J [Bacillus weihenstephanensis KBAB4] gi|163865179|gb|ABY46238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus weihenstephanensis KBAB4] Length = 174 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 91/166 (54%), Gaps = 1/166 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + ++ Sbjct: 1 MNGEFVAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ + E R ++ FF + ++ A N + FS + Sbjct: 61 LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNQST 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L NN IG +LY++Y P E++ ILL++++GAI+L + Sbjct: 120 QGSLPLHENNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKK 165 >gi|297531550|ref|YP_003672825.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. C56-T3] gi|297254802|gb|ADI28248.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. C56-T3] Length = 173 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 1/172 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F+L + AI ++ + N ++ V +L+ F+ AGL++LL AEFVA++ ++ Sbjct: 1 MSGTDIAFFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + LF IM+ + E G + L+ A F + + Sbjct: 61 IYSGAITIIMLFAIMLTRHHTDERERPTTGGVWHKA-VAALSVIAFGLAVYFGIRQLDFG 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 G+N + IGK LY+ Y P EI ILL+++IGAIVL + + + Sbjct: 120 ADGSALSGDNAKAIGKSLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAE 171 >gi|158335316|ref|YP_001516488.1| NADH dehydrogenase subunit J [Acaryochloris marina MBIC11017] gi|158305557|gb|ABW27174.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain J, putative [Acaryochloris marina MBIC11017] Length = 198 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 87/166 (52%), Gaps = 2/166 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + L S M + ++ VV + +YS F+L F++ AGL++LL A+FV+ +++Y Sbjct: 7 VQLVSLILLSVMMLGAALGVVLFESIVYSAFTLGAVFISIAGLYILLNADFVSAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + R ++ ++ L + ++ + Sbjct: 67 VGAVNVLILFAIMLVNKTEDFKP--LPRRWIRKVSTAFVSLALFTLLATMVLQTNWPVDV 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 L ++VE IG +T Y P E++ +LL++++GA+VL R Sbjct: 125 ALAPPASSVETIGIHFFTDYLLPFELASILLLMALVGAVVLARRET 170 >gi|56421884|ref|YP_149202.1| NADH dehydrogenase subunit J [Geobacillus kaustophilus HTA426] gi|56381726|dbj|BAD77634.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Geobacillus kaustophilus HTA426] Length = 173 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 1/172 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F+L + AI ++ + N ++ V +L+ F+ AGL++LL AEFVA++ ++ Sbjct: 1 MSGTDIAFFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + LF IM+ + E + G + L+ A F + + Sbjct: 61 IYSGAITIIMLFAIMLTRHHTDERERQTTGGVWHKA-VAALSVIAFGLAVYFGIRQLDFG 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 G+N + IGK+LY+ Y P EI ILL+++IGAIVL + + + Sbjct: 120 ADGSALAGDNAKAIGKLLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAE 171 >gi|11466641|ref|NP_066324.1| NADH dehydrogenase subunit 6 [Malawimonas jakobiformis] gi|10178679|gb|AAG13691.1|AF295546_17 NADH dehydrogenase subunit 6 [Malawimonas jakobiformis] Length = 190 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 10/190 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY +S + I+S+ +V+ V NPI+S+ LI F+N +GL +LL EF+A+ ++VY Sbjct: 1 MSEILFYFYSILTIVSAIMVIAVTNPIHSILFLILVFINVSGLLILLEVEFLAITLIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119 VGA+ V FL + MM +I I V+ I I+ ++ N S Sbjct: 61 VGAIAVLFLSVTMMPNIKIVVSNLNLLHYIPIGGIITIIFLLEMIICFNNDFISIFNLNN 120 Query: 120 -------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + + N+E+IG ++YT Y ISGFILLL+M GAIVL L +IK Sbjct: 121 INDFDFIQWTNELKHMTNIESIGILIYTHYYDLFIISGFILLLAMNGAIVLTLHINNNIK 180 Query: 173 RQDISKQLES 182 RQ I Q+ S Sbjct: 181 RQQIFFQIYS 190 >gi|113475269|ref|YP_721330.1| NADH dehydrogenase subunit J [Trichodesmium erythraeum IMS101] gi|110166317|gb|ABG50857.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Trichodesmium erythraeum IMS101] Length = 207 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 3/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M I ++ VV N ++S F L F++ +GL+LLL A+FVA +++Y Sbjct: 7 VQFVSFVILAVMMIAAALGVVLFSNIVHSAFLLGGVFMSISGLYLLLNADFVATAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121 VGAV V LF IM+++ + + G++ L S ++ S+ + Sbjct: 67 VGAVNVLILFAIMLVNKREDFK--ALPNAWFRKVATGLVCFGLFALLSTMVLSSSWSIPV 124 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +++ IGK +T + P E++ LL++M+GAI+L R Sbjct: 125 VGNATRESSIVLIGKHFFTDFLLPFELASVCLLIAMVGAIILARR 169 >gi|257852652|gb|ACV71338.1| NADH dehydrogenase subunit 6 [Elvasia calophyllea] Length = 168 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 11/168 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +VV +NP++SV I F + +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVVRAKNPVHSVLFPILVFRDTSGLLLFLGLDFFAMIFPVVHIGAIAVSFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFK 127 I I R S IG I E+ N + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYMVYAGKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 N+E +G +LYT Y + ILL++MIGAIVL + +KRQD Sbjct: 121 WTNLETLGNLLYTYYFVWFLLPSLILLVAMIGAIVLTMHRTTKVKRQD 168 >gi|1352591|sp|P48925|NU6M_CYACA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|758173|emb|CAA88767.1| NADH dehydrogenase subunit 6 [Cyanidium caldarium] Length = 201 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 72/197 (36%), Positives = 125/197 (63%), Gaps = 7/197 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ + FY FS ++++S+ +V++V+NP++SV LI F N GL LLLGAEF++++ L+VY Sbjct: 2 IKLVLFYFFSGLSLVSASIVISVKNPVFSVVFLILVFFNVVGLLLLLGAEFLSLLFLIVY 61 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-- 119 VGA+ V FLF++M+L++ IE+ F GS + I E+ + ++ + F++ Sbjct: 62 VGAIAVLFLFVVMILNLKFIELRSSFFYYAFFGSLIMAIFLFEIFIILNSDLTFASSYFL 121 Query: 120 ----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + ++ N++ +G VLYT Y+Y +SGF+LL++++GAI+L L R I+RQD Sbjct: 122 ERKRIWVQELYSYTNLQILGNVLYTSYSYLFILSGFVLLVAILGAIILTLYQRSQIRRQD 181 Query: 176 ISKQLESNPDNSIVMVK 192 + Q+ N D++I K Sbjct: 182 PNVQVVRNFDDTIRFFK 198 >gi|224178046|ref|YP_002600968.1| subunit 6 of NADH-plastoquinone oxidoreductase [Pyramimonas parkeae] gi|215882713|gb|ACJ71086.1| subunit 6 of NADH-plastoquinone oxidoreductase [Pyramimonas parkeae] Length = 172 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 1/167 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q F +F+F++I S VV N +Y+ F L V+ AG +LLL A+F+A ++ Sbjct: 1 MNLQDFCFSIFTFLSITGSLGVVFFPNLVYAAFFLGVTLVSVAGFYLLLNADFLAAAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVG + + LF IM++D + V P K+ G LA L + + +++ Sbjct: 61 LYVGGINILILFAIMLVDANARVTRPDSKKTNPFWIVQGSLAVGLFLLLTK-VIYITPWP 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + N V IG+ +++ + +P E+ +LL+++IG +VL R Sbjct: 120 SPPFIPVTNTVYFIGRHIFSDFLFPFELVSILLLIALIGVVVLAKRE 166 >gi|34556908|ref|NP_906723.1| NADH dehydrogenase subunit J [Wolinella succinogenes DSM 1740] gi|34482623|emb|CAE09623.1| NADH OXIDOREDUCTASE I [Wolinella succinogenes] Length = 190 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 7/192 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FYLF+ ++ +VVT N ++++ +L + + F +LGAEF+ + ++VY Sbjct: 2 FETIAFYLFAALSASMFLIVVTTNNVLHALSALAAGMIFISAFFFMLGAEFLGVAQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+ + F +M D + E + R L + L++ + F+ S + Sbjct: 62 TGAVMALYAFGMMFFDSSKAIKEKEENRWVLWVLIGIVTLLLLVILGAPFIHLSLDAR-H 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + N E IG VL+TQY P E++ +LL++MI IVL K+ D S L S Sbjct: 121 PIPEGVGNTEAIGYVLFTQYLVPFELAAVMLLVAMIAGIVLA------GKKMDQSLTLMS 174 Query: 183 NPDNSIVMVKVK 194 + + I++ K K Sbjct: 175 DEEAEILLKKTK 186 >gi|220907087|ref|YP_002482398.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 7425] gi|219863698|gb|ACL44037.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 7425] Length = 207 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 2/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q++ L M I S+ VV + N +YS F L F++ AG +LLL A+FV+ +++Y Sbjct: 7 VQTVSVVLLGLMMIGSALGVVLLNNIVYSAFLLGGVFISMAGFYLLLNADFVSAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + A + ++ +++ L +V + S Sbjct: 67 VGAVNVLILFAIMLVNKREDFAPVAGR--WIRQGAAALVSLGLFALLGTMVVQTPWPIPS 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + IG+ ++ + P E++ +LL++++GA+VL R Sbjct: 125 VASTVTSTLVVIGEHFFSDFLLPFELASVLLLMALVGAVVLARRE 169 >gi|42784464|ref|NP_981711.1| NADH dehydrogenase subunit J [Bacillus cereus ATCC 10987] gi|118480335|ref|YP_897486.1| NADH dehydrogenase subunit J [Bacillus thuringiensis str. Al Hakam] gi|196045757|ref|ZP_03112987.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus 03BB108] gi|206976921|ref|ZP_03237823.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus H3081.97] gi|217962783|ref|YP_002341359.1| NADH dehydrogenase subunit J [Bacillus cereus AH187] gi|222098765|ref|YP_002532823.1| NADH dehydrogenase subunit j [Bacillus cereus Q1] gi|225867271|ref|YP_002752649.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus 03BB102] gi|301056761|ref|YP_003794972.1| NADH dehydrogenase subunit J [Bacillus anthracis CI] gi|42740396|gb|AAS44319.1| NADH dehydrogenase I, J subunit [Bacillus cereus ATCC 10987] gi|118419560|gb|ABK87979.1| NADH dehydrogenase subunit J [Bacillus thuringiensis str. Al Hakam] gi|196023588|gb|EDX62265.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus 03BB108] gi|206744887|gb|EDZ56292.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus H3081.97] gi|217062987|gb|ACJ77237.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH187] gi|221242824|gb|ACM15534.1| NADH dehydrogenase I, J subunit [Bacillus cereus Q1] gi|225787352|gb|ACO27569.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus 03BB102] gi|300378930|gb|ADK07834.1| NADH dehydrogenase subunit J [Bacillus cereus biovar anthracis str. CI] Length = 174 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 92/170 (54%), Gaps = 1/170 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + ++ Sbjct: 1 MNGEFIAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ + E R ++ FF + ++ A N + F+ E Sbjct: 61 LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L N IG +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 120 QGSLPLHEKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169 >gi|323398669|ref|YP_004222744.1| NADH dehydrogenase subunit 6 [Glaucocystis nostochinearum] gi|321401362|gb|ADW83116.1| NADH dehydrogenase subunit 6 [Glaucocystis nostochinearum] Length = 249 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 32/223 (14%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++ FF LFSF+A+ SS + +T +NPI+SVF LI F N GL +LL AEF+AM+ LV Sbjct: 28 LSIEYTFFILFSFLALFSSIIAITSKNPIHSVFYLILVFFNVTGLLILLNAEFLAMLILV 87 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY+GA+ V FLF++MML+I + + F FFI +L + + V Sbjct: 88 VYLGAIAVLFLFVVMMLNIKYITLKQITYKNFFFEFFIFLLLFLEVFLLTENNVLPNIIN 147 Query: 121 ----------------LSRLVFK---------------GNNVENIGKVLYTQYAYPLEIS 149 ++ L FK N G V+Y Y Y ++ Sbjct: 148 FFDMKFLTNIEKYLDVINNLYFKYYKTSLDLGSFDNSLYTNAHLFG-VIYISYLYYFFMA 206 Query: 150 GFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 GFILL++MIGAIVL L R ++++Q I Q+ + ++V+ K Sbjct: 207 GFILLIAMIGAIVLTLHRRPNVRKQQIIDQITRDFKAAVVLRK 249 >gi|284050277|ref|ZP_06380487.1| NADH dehydrogenase subunit J [Arthrospira platensis str. Paraca] gi|291568239|dbj|BAI90511.1| NADH dehydrogenase subunit 6 [Arthrospira platensis NIES-39] Length = 206 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 2/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F L + M I S+ VV ++N +YS F L F++ AGL+LLL A+FVA +++Y Sbjct: 7 VQVVSFGLLTIMMISSALGVVLLKNIVYSAFLLGGVFMSMAGLYLLLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VG+V V LF IM+++ + L ++ L S ++ + + Sbjct: 67 VGSVNVLILFGIMLVNKQQDF--RVLPNAGLRQIATAVVCVGLFALLSTMVLSTPWSVTA 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +V ++ IG+ +T + P E++ LL++M+GAIVL R Sbjct: 125 AVVSIESSAIAIGEHFFTDFLLPFELASVFLLMAMVGAIVLARR 168 >gi|23464626|ref|NP_696994.1| NADH dehydrogenase subunit 6 [Monosiga brevicollis ATCC 50154] gi|23344088|gb|AAN28364.1| NADH dehydrogenase subunit 6 [Monosiga brevicollis] Length = 228 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 28/209 (13%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M Y+FS A S LV++ +NPI SV L+ F N++ L L+LG EF+A++ L+VY Sbjct: 1 MIETLVYIFSIGAFFSGILVISSKNPINSVLGLVMCFANSSILLLMLGFEFLALLFLIVY 60 Query: 63 VGAVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGA+ + FLF++MML+I +E+ E + +G I EL+V S+ Sbjct: 61 VGALAILFLFVVMMLNIRLVELIENFTRYLPIGGIIGIIFILELMVIVDEQFAMSSNNLF 120 Query: 122 SRL---------------------------VFKGNNVENIGKVLYTQYAYPLEISGFILL 154 ++L + N+E+IG++LYT +S +LL Sbjct: 121 TQLFFINNPYELSLFMNSYSVDITSNYNNNIVNLTNIESIGQILYTHGYIYFIVSSIVLL 180 Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESN 183 ++M+GAIVL L H + +KRQDI Q+ + Sbjct: 181 IAMVGAIVLTLYHEQGVKRQDIFSQISTQ 209 >gi|324329242|gb|ADY24502.1| NADH:ubiquinone oxidoreductase subunit J [Bacillus thuringiensis serovar finitimus YBT-020] Length = 174 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 92/170 (54%), Gaps = 1/170 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S AII L++ V ++ + +L+ F++ AGL+ LL AEF+ + ++ Sbjct: 1 MNGEFIAFFILSLSAIIGGILMLNVTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ + E R ++ FF + ++ A N + F+ E Sbjct: 61 LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L N IG +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 120 QGSLPLHEKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169 >gi|196039591|ref|ZP_03106896.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus NVH0597-99] gi|196029751|gb|EDX68353.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus NVH0597-99] Length = 174 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 92/170 (54%), Gaps = 1/170 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + ++ Sbjct: 1 MNGEFIAFFILSLFAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ + E R ++ FF + ++ A N + F+ E Sbjct: 61 LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L N IG +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 120 QGSLPLHEKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169 >gi|269958708|ref|YP_003328495.1| NADH dehydrogenase subunit J [Anaplasma centrale str. Israel] gi|269848537|gb|ACZ49181.1| NADH dehydrogenase subunit J [Anaplasma centrale str. Israel] Length = 200 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 118/202 (58%), Gaps = 11/202 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S F+ F+ +A++S+ V+ + NPIYSV SLI F ++ +F++LGAE VAM+ ++VY Sbjct: 1 MLSFLFFCFAGVAVLSAVGVILLPNPIYSVLSLILTFFVSSAVFIMLGAELVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF---SAEG 119 VGAV V FLF++MMLDI + R + G + + +G+ L + +F SA Sbjct: 61 VGAVAVLFLFVVMMLDI----SRVRSRHGLVKRYPLGVACMLLFFGCMVYSIFHVKSATI 116 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK--RQDIS 177 S V NV IG LYT+YAY +++G +LL++ +G++VL+ K +QD+S Sbjct: 117 GASEGVVGVGNVFLIGSRLYTEYAYAFQLAGVLLLIAGVGSLVLVAGGGDGRKSLKQDVS 176 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 +Q+ + I ++ G G+ Sbjct: 177 QQIGRSSK--IRLLSPGVGAGV 196 >gi|5042150|emb|CAB44670.1| NDH-G protein [Nostoc sp. PCC 7120] Length = 202 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 2/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + M I + VV + +YS F L F++ AG++LLL +FVA ++VY Sbjct: 7 VQVVPFGILATMLIGPALGVVLATSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ + + I++ L S ++ + + Sbjct: 67 VGAVNVLILFAIMLVNKRQDFTP--YPSAGIRKVLTAIVSVGLFALLSTMVLATPWAYST 124 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 ++ IG+ ++ + P E++ +LL++M+GAI+L R Sbjct: 125 TPKVGDGSIIVIGEHFFSDFLLPFELASVLLLMAMVGAIILARRE 169 >gi|302523886|ref|ZP_07276228.1| NADH dehydrogenase subunit J [Streptomyces sp. AA4] gi|302432781|gb|EFL04597.1| NADH dehydrogenase subunit J [Streptomyces sp. AA4] Length = 275 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 89/201 (44%), Gaps = 3/201 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ ++++ + ++ RN ++S L+ + L++ A F+ ++V Sbjct: 3 TGEAIAFWILGPLSLLGALGMIFSRNAVHSALWLVLTMLTLGALYMTQSAPFLGFTQIIV 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF++M++ D + RG + + + ++ A F + Sbjct: 63 YTGAIMMLFLFVLMLVGRDSSDSVVEVLRGQRLAAGVLGIGLAALIAAGVFRAMANVTPA 122 Query: 122 SRLVFKGNN---VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 L +G++++TQY +P E++ +L+ + +GA+VL R + + Sbjct: 123 KPLDPYQQTGGGPGGLGRLIFTQYLFPFELTSALLITAALGAMVLAFTGRSGKSKLSQRE 182 Query: 179 QLESNPDNSIVMVKVKSGKGI 199 ++ G G+ Sbjct: 183 LVKLRFQGKHDRPSPLPGPGV 203 >gi|148266245|ref|YP_001232951.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter uraniireducens Rf4] gi|146399745|gb|ABQ28378.1| NADH dehydrogenase subunit J [Geobacter uraniireducens Rf4] Length = 168 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 1/166 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++SLFF + + +A+ISS LV+T +NPI S SL+ F A +++L A F+A I ++VY Sbjct: 2 LESLFFIIVAAVAVISSILVITCKNPINSALSLVMTFFCLATFYVMLDAPFMAAIQVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL- 121 GA++V +F+IM+L+I E GS ++ + + +G + Sbjct: 62 AGAIMVLIVFVIMLLNIRTETGRKTTHAILAGSIIGLLVLFQTCYFLFRSSLTGNKGVMD 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + LV + +VE IGK LYT++ P EI+ +LL+++IGA++L R Sbjct: 122 TALVERVGHVELIGKALYTEFLLPFEITSLLLLVAIIGAVILTKRK 167 >gi|317968122|ref|ZP_07969512.1| NADH:ubiquinone oxidoreductase subunit J [Synechococcus sp. CB0205] Length = 199 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F S I + VV + + +YS F L F++ AGL+LLL A FVA ++V Sbjct: 6 STQFICFVCLSAAVAIGALGVVLLPSIVYSAFLLGGVFLSVAGLYLLLNASFVAAAQVLV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V LF IM+++ ++A + F G + A L + Sbjct: 66 YVGAVNVLILFAIMLVNKKEDLA--AIPGLAVRRFLSGAVCAGLFALLLRVAFTTPWALP 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 IG+ L++ Y P E++ +LL++MIGAIVL R Sbjct: 124 GPTPIGEEATIRIGEHLFSDYLLPFELASVLLLMAMIGAIVLARR 168 >gi|30265317|ref|NP_847694.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Ames] gi|47530855|ref|YP_022204.1| NADH dehydrogenase subunit J [Bacillus anthracis str. 'Ames Ancestor'] gi|49188130|ref|YP_031383.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Sterne] gi|49481260|ref|YP_039285.1| NADH dehydrogenase subunit J [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140267|ref|YP_086563.1| NADH dehydrogenase subunit J [Bacillus cereus E33L] gi|65317270|ref|ZP_00390229.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Bacillus anthracis str. A2012] gi|165870029|ref|ZP_02214686.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0488] gi|167636384|ref|ZP_02394684.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0442] gi|167641713|ref|ZP_02399957.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0193] gi|170689349|ref|ZP_02880543.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0465] gi|170708833|ref|ZP_02899268.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0389] gi|177654088|ref|ZP_02936098.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0174] gi|190567786|ref|ZP_03020698.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis Tsiankovskii-I] gi|196036274|ref|ZP_03103672.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus W] gi|218906471|ref|YP_002454305.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH820] gi|227818057|ref|YP_002818066.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. CDC 684] gi|229602758|ref|YP_002869509.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0248] gi|254686283|ref|ZP_05150142.1| NADH dehydrogenase subunit J [Bacillus anthracis str. CNEVA-9066] gi|254724279|ref|ZP_05186063.1| NADH dehydrogenase subunit J [Bacillus anthracis str. A1055] gi|254735222|ref|ZP_05192931.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Western North America USA6153] gi|254744426|ref|ZP_05202106.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Kruger B] gi|254755730|ref|ZP_05207763.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Vollum] gi|254759537|ref|ZP_05211562.1| NADH dehydrogenase subunit J [Bacillus anthracis str. Australia 94] gi|30259995|gb|AAP29180.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. Ames] gi|47506003|gb|AAT34679.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49182057|gb|AAT57433.1| NADH dehydrogenase I, J subunit [Bacillus anthracis str. Sterne] gi|49332816|gb|AAT63462.1| NADH dehydrogenase I, subunit J (NADH-quinone oxidoreductase, chain J) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973736|gb|AAU15286.1| NADH dehydrogenase I, subunit J (NADH-quinone oxidoreductase, chain J) [Bacillus cereus E33L] gi|164714352|gb|EDR19872.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0488] gi|167510338|gb|EDR85740.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0193] gi|167528218|gb|EDR91000.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0442] gi|170126233|gb|EDS95125.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0389] gi|170666717|gb|EDT17486.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0465] gi|172080971|gb|EDT66050.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0174] gi|190561202|gb|EDV15175.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis Tsiankovskii-I] gi|195991066|gb|EDX55036.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus W] gi|218535828|gb|ACK88226.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus cereus AH820] gi|227005897|gb|ACP15640.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. CDC 684] gi|229267166|gb|ACQ48803.1| NADH dehydrogenase (ubiquinone), J subunit [Bacillus anthracis str. A0248] Length = 174 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 92/170 (54%), Gaps = 1/170 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + ++ Sbjct: 1 MNGEFIAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ + E R ++ FF + ++ A N + F+ E Sbjct: 61 LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESA 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L N IG +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 120 QGSLPLHEKNTLQIGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 169 >gi|332708450|ref|ZP_08428426.1| NADH dehydrogenase subunit J [Lyngbya majuscula 3L] gi|332352781|gb|EGJ32345.1| NADH dehydrogenase subunit J [Lyngbya majuscula 3L] Length = 208 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 1/164 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + + S + I ++ VV + N +YS F L F+ +GL++LL A+FVA +++Y Sbjct: 7 VQIISVAILSVIMIGAALGVVLLSNIVYSAFLLAGVFIGISGLYILLNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ E +P KR + + ++ + E+ Sbjct: 67 VGAVNVLILFAIMLVN-KREDFQPMTKRWVRTGSTAIVCIGLFALLSTMVLATPWSVEID 125 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + N IG+ ++ + P E++ +LL++M+GAI++ R Sbjct: 126 PAMVVTNTAVEIGQHFFSDFLLPFELASVLLLMAMVGAIIIARR 169 >gi|327394574|dbj|BAK11996.1| NADH-quinone oxidoreductase chain J NuoJ [Pantoea ananatis AJ13355] Length = 200 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + ++ AG+F LGA F + ++VY G Sbjct: 19 EFAFYLCGLVAVVTTLRVITHTNPVHALLYLIVSLLSVAGVFFSLGAYFAGALEIIVYAG 78 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + ++ + L + L++ + + +A+ + + Sbjct: 79 AIMVLFVFVVMMLNLGKATEKQEREWLSPSLWIGPGLVSFLLLAVMIYAIMTAQDQ--GI 136 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 K + + +G L+ Y +E++ +LL ++ A L R+ Sbjct: 137 DGKIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHLGREERQG 182 >gi|291618181|ref|YP_003520923.1| NuoJ [Pantoea ananatis LMG 20103] gi|291153211|gb|ADD77795.1| NuoJ [Pantoea ananatis LMG 20103] Length = 204 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + ++ AG+F LGA F + ++VY G Sbjct: 23 EFAFYLCGLVAVVTTLRVITHTNPVHALLYLIVSLLSVAGVFFSLGAYFAGALEIIVYAG 82 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + ++ + L + L++ + + +A+ + + Sbjct: 83 AIMVLFVFVVMMLNLGKATEKQEREWLSPSLWIGPGLVSFLLLAVMIYAIMTAQDQ--GI 140 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 K + + +G L+ Y +E++ +LL ++ A L R+ Sbjct: 141 DGKIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHLGREERQG 186 >gi|270267568|ref|YP_003331252.1| NADH dehydrogenase subunit 6 [Dendronephthya gigantea] gi|209887406|gb|ACI95028.1| NADH dehydrogenase subunit 6 [Dendronephthya gigantea] Length = 185 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 17/187 (9%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +++SF+V++ NP+YSVF L+ AFVNAA +F+ L +++ +I ++VYVGA+ Sbjct: 4 LFIIISLGIVVASFMVISTPNPVYSVFWLVIAFVNAAVMFISLELDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IM++ +V + +I S+ + S + + ++ Sbjct: 64 AILFLFVIMLIQQPNKVYSQDHSHFLP-------VGLSVIFLFSSLLTNSPKYISNPVIG 116 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDI 176 N+ IG LYT Y + I+ +LL++MIGAI+L + RQD+ Sbjct: 117 SKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNFYGESLRSRQDL 176 Query: 177 SKQLESN 183 Q+ Sbjct: 177 FLQISRE 183 >gi|197120278|ref|YP_002140705.1| NADH dehydrogenase I subunit J [Geobacter bemidjiensis Bem] gi|197089638|gb|ACH40909.1| NADH dehydrogenase I, J subunit [Geobacter bemidjiensis Bem] Length = 167 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 1/166 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+S+FF + + +A+ISS LVVT +NPI S SL+ F A +++L A F+A ++VY Sbjct: 1 MESIFFLVVATVAVISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 GA++V +F+IM+L++ E + F GS + L + + M + Sbjct: 61 AGAIMVLIIFVIMLLNVKAESGKRGSHAVFAGSVLGLFALFQTVWFLSKGSMTGATGTMD 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +VE IGK L+T + P EI+ +LL +++GA++L + Sbjct: 121 KAQIISVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVILAKKK 166 >gi|222053579|ref|YP_002535941.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. FRC-32] gi|221562868|gb|ACM18840.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. FRC-32] Length = 168 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 1/166 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++SLFF + + +A+ISS LV+T RNPI S SL+ F A +++L A F+A I ++VY Sbjct: 2 LESLFFLIVAAVAVISSILVITCRNPINSALSLVMTFFCLATFYVMLDAPFMAAIQVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 GA++V +F+IM+L+I E GS + IL M Sbjct: 62 AGAIMVLIVFVIMLLNIRTETGRKTTHAVLAGSIVGLLILFQTCYFLTKGSMTGLTGAMD 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + L+ K +VE IGK LYT + P EI+ +LL+++IGA++L R Sbjct: 122 TALIEKVGHVELIGKALYTDFLLPFEITSLLLLVAIIGAVILSKRK 167 >gi|169629229|ref|YP_001702878.1| NADH dehydrogenase subunit J [Mycobacterium abscessus ATCC 19977] gi|169241196|emb|CAM62224.1| NADH-quinone oxidoreductase, J subunit NuoJ [Mycobacterium abscessus] Length = 259 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 76/167 (45%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F++ +A++ + V+ +YS L V A F+ GA F+ + +VV Sbjct: 23 TWEGVTFWVLGAIAVLGALGVIAAPKAVYSAIFLAMTMVILAVFFVAQGALFLGVAQVVV 82 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M + +D + G L ++ AS + Sbjct: 83 YTGAVMMLFLFVLMFVGVDSSDSLVETLPGQRVGAVAAGLGFGILAIASIGNASTTVFVG 142 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 NVE + + ++ Y + E++G +L+ + IGA+VL R + Sbjct: 143 LGQANSRGNVEGLAERIFIDYLWAFELTGALLITATIGAMVLAHREK 189 >gi|229821700|ref|YP_002883226.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beutenbergia cavernae DSM 12333] gi|229567613|gb|ACQ81464.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Beutenbergia cavernae DSM 12333] Length = 286 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 92/174 (52%), Gaps = 4/174 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ + + +I++ ++ R +++ S++F V A L+ L A F+ + +VV Sbjct: 9 TGEAVLFWVLAPLMVIAALGLLFARKAVHAAISVVFVMVALAFLYTALEAPFLGVAQVVV 68 Query: 62 YVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 Y GAV+ F+F++M++ +D V E + + ++ F LA+ LI + + A+G Sbjct: 69 YTGAVMTLFVFVLMLVGVDASDSVVETLQGQRWIAVLFGVGLASVLIGVIATATLPDAQG 128 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 V N + ++++ Q+ + E+ G +L+ + +GAI L R R KR Sbjct: 129 LAE--VNTDGNPVGVARLIFGQFVFAFELVGALLITAALGAITLTHRERLGRKR 180 >gi|56791570|gb|AAW30323.1| NADH dehydrogenase subunit 6 [Pinus thunbergii] Length = 186 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 11/186 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++ I F N +GL +LLG + AMI+ VV++GA Sbjct: 1 MILSVLSSPALVSGLMVVRAKNPVHPASFPIPVFRNTSGLLILLGPDLPAMISPVVHIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL 124 + V L ++MML++ I + R S IG++ E+ N + S +S Sbjct: 61 IAVSSLPVVMMLNMKIAEIHEKVSRYPPVSGIIGLILRWEMFFIPDNDHIPSLPTCISTT 120 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + N E G L+T Y+ +S I ++MIGA VL + +KRQ Sbjct: 121 SLRYTVHAGEIQSWTNSETSGNSLHTYYSVRFSVSSPIPSVAMIGATVLTMHRTTRVKRQ 180 Query: 175 DISKQL 180 D+ ++ Sbjct: 181 DVFRRN 186 >gi|47569789|ref|ZP_00240460.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10), putative [Bacillus cereus G9241] gi|47553531|gb|EAL11911.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10), putative [Bacillus cereus G9241] Length = 174 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 91/170 (53%), Gaps = 1/170 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + ++ Sbjct: 1 MNGEFIAFFILSLSAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ + E R ++ FF + ++ A N + F+ E Sbjct: 61 LYSGAITIIMIFGIMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANEST 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L N IG +LY++Y P E+ ILL++++GAI+L + ++ Sbjct: 120 QGSLPLHEKNTLQIGTLLYSKYIIPFELISVILLVALVGAIILAKKDEKE 169 >gi|312131903|ref|YP_003999243.1| NADH dehydrogenase subunit j [Leadbetterella byssophila DSM 17132] gi|311908449|gb|ADQ18890.1| NADH dehydrogenase subunit J [Leadbetterella byssophila DSM 17132] Length = 178 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 93/166 (56%), Gaps = 1/166 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY F+ +A+ + + + P++SV +LI F + +G+++LL A+F+A++ ++VY Sbjct: 9 MVEWVFYFFAVLALCGALGTILSKKPMHSVIALIITFFSLSGIYVLLNAQFLAVVNIIVY 68 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IM L++ E E R L + G++ ++V F+ ++ Sbjct: 69 AGAIMVLFLFVIMFLNLRQESNELRNTPMILAATISGLILVLMLVAVYRKAYFAPVNPVT 128 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G +EN+G +LY Y P E+ + L+++ GAI++ R + Sbjct: 129 FRAETGM-IENLGTLLYRHYMLPFELVSVLFLVAISGAILIGKREK 173 >gi|289667370|ref|ZP_06488445.1| NADH dehydrogenase subunit J [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 194 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 4/193 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FY FS +A++S+ V++VRNP+Y+V LI F + A ++LL+GAEF+ + ++ Sbjct: 2 MDWVTIAFYAFSAVAVVSAGAVISVRNPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVL 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 VYVGAV+V FLF++MMLDID + + + +V SA Sbjct: 62 VYVGAVMVLFLFVVMMLDIDTSRLREGWVKYMPLGVIVAVAMLAQMVTLIGVKSRSATPF 121 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + +N+ + K LYT++ P E + IL ++++ A++L LR R IK Q+ Sbjct: 122 PADNAAAQAADSSNLTWLAKSLYTEFLLPFEFAAVILTVAVVAAVMLTLRKRTGIKLQNA 181 Query: 177 SKQLESNPDNSIV 189 +Q + + Sbjct: 182 GEQSRVKAGDRLR 194 >gi|327325777|gb|EGE67569.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL103PA1] Length = 284 Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 96/194 (49%), Gaps = 10/194 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + ++++ ++V + P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--- 118 Y GA+++ FLF++M++ +D + +G + I LA +++ + + + Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNTVTTDVIG 135 Query: 119 -----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 G GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKKKS 195 Query: 172 KRQDISKQLESNPD 185 +R+ ++ ++ + + Sbjct: 196 QRERVTDRMAAYAE 209 >gi|311741751|ref|ZP_07715562.1| NADH-quinone oxidoreductase subunit J [Aeromicrobium marinum DSM 15272] gi|311314757|gb|EFQ84663.1| NADH-quinone oxidoreductase subunit J [Aeromicrobium marinum DSM 15272] Length = 255 Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 95/195 (48%), Gaps = 4/195 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + + ++++ +V R +++ L ++ A L+ + GA F+ + ++VY GA++ Sbjct: 4 FWILAPIMVLAALGLVFSRKAVHAALWLAVVMISLAVLYAVQGAPFLFAVQIIVYTGAIM 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF++M++ ++ +++ +G G+ +G+L L+V + L Sbjct: 64 MLFLFVVMLVGVESDLSLTETIKGQRAGAIVVGLLFGVLLVIGVGQVSVGPVTGLDEANA 123 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR--RDIKRQDISKQLESNP 184 G NV + +++ + + + +L+ +++GA+VL R R + + D++ + + Sbjct: 124 NG-NVYGLAALMFGPFVLAFQFTAALLVTAVLGAMVLAHRERLTPRLTQADLAARRMRDY 182 Query: 185 DNSIVMVKVKSGKGI 199 + G+ Sbjct: 183 AETGRHPGNAPTPGV 197 >gi|333025110|ref|ZP_08453174.1| putative NADH dehydrogenase subunit J [Streptomyces sp. Tu6071] gi|332744962|gb|EGJ75403.1| putative NADH dehydrogenase subunit J [Streptomyces sp. Tu6071] Length = 261 Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 73/148 (49%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 + + ++S L + A +L GA F+ ++ +VVY GAV++ FLF++M++ + Sbjct: 1 MLMPKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQIVVYTGAVMMLFLFVVMLVGVTAA 60 Query: 83 VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142 + +G + L ++ ++ + + G NV+ + + ++T Y Sbjct: 61 DSLKETIKGQRWLAVLCFLGFGALLVGGIGNASVSQFQGTGRANAGGNVQGLAREIFTTY 120 Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRRD 170 + EI+G +L+ + +GA+VL R R + Sbjct: 121 VFAFEITGALLITATVGAMVLTHRERTE 148 >gi|86606291|ref|YP_475054.1| NADH dehydrogenase subunit J [Synechococcus sp. JA-3-3Ab] gi|86554833|gb|ABC99791.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6 [Synechococcus sp. JA-3-3Ab] Length = 202 Score = 127 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + S MAI + VV N +YS F L F++ AGL+LLL A+FVA +++Y Sbjct: 7 VQLVTFGVLSAMAIGFALGVVWAPNIVYSGFLLGGVFLSMAGLYLLLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ A K G+L + + L + + + Sbjct: 67 VGAVNVLILFAIMLVNRRYTFAP--LKLGWLRNGVTAAVCLGLFALLTAMALNTPW--QL 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + ++ +G ++ Y P E++ +LL+++IGAIVL R Sbjct: 123 EPIQPTSSALVMGGHFFSDYLLPFELASVLLLMALIGAIVLARRE 167 >gi|282855265|ref|ZP_06264597.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes J139] gi|282581853|gb|EFB87238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes J139] gi|314983069|gb|EFT27161.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL110PA3] gi|315090602|gb|EFT62578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL110PA4] gi|315093911|gb|EFT65887.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL060PA1] gi|315104130|gb|EFT76106.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL050PA2] Length = 284 Score = 127 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + ++++ ++V + P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ +D + +G + I LA LI+ N + G Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTDVIG 135 Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKKKS 195 Query: 172 KRQDISKQLESNPD 185 +R+ ++ ++ + + Sbjct: 196 QRERVTDRMAAYAE 209 >gi|148657104|ref|YP_001277309.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus sp. RS-1] gi|148569214|gb|ABQ91359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus sp. RS-1] Length = 215 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 2/174 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + ++ F +F+ ++++ + VTV+N +++ LI +F L+LL+ AEF+ + +++ Sbjct: 3 TLITILFLVFAVFILVAAIMTVTVKNIVHAALWLISSFFGVGALYLLMEAEFLGVAQVLI 62 Query: 62 YVGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEG 119 YVGAV + LF IM+ D++ R ++ L LIV + Sbjct: 63 YVGAVSILILFAIMLTRDLEGSQNRQLTPRWWIALLVPAALFGLLIVPTVMTHAWQLPPP 122 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + + IG +Y P E++ +LL++MIGAIV+ R +R Sbjct: 123 PPAGQPPSISGAQQIGTAFMREYLLPFEVAAILLLVAMIGAIVVAFEEREQRRR 176 >gi|257852720|gb|ACV71372.1| NADH dehydrogenase subunit 6 [Lepidobotrys staudtii] Length = 169 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 11/168 (6%) Query: 28 PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87 P++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I I Sbjct: 1 PVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEE 60 Query: 88 KKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGELSRL----------VFKGNNVENIGK 136 R S IG++ E+ N + + + V N+E +G Sbjct: 61 VLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGN 120 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 +LYT Y+ + ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 LLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDF 168 >gi|54024628|ref|YP_118870.1| NADH dehydrogenase subunit J [Nocardia farcinica IFM 10152] gi|54016136|dbj|BAD57506.1| putative NADH dehydrogenase I chain J [Nocardia farcinica IFM 10152] Length = 274 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 92/185 (49%), Gaps = 4/185 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ + +A++ + +V ++S L + A +++ A F+ ++ +VV Sbjct: 15 TGEAVQFWILAPLAVLGALGMVFAAKAVHSAICLAATMIALAVMYIAQDALFLGVVQIVV 74 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGE 120 Y GAV++ FLF++M++ +D + RG + + +GI L++ + + Sbjct: 75 YTGAVMMLFLFVLMLVGVDSAESLRETLRGQRIAATVVGIGFGLLLMAGIGIGIRESGVT 134 Query: 121 LSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 F G + + + ++++ +Y + E++G +L+ + IGA+VL HR + ++ Sbjct: 135 FPATGFPGRDVIAELAELIFLRYVWAFELTGALLITATIGAMVLA--HRDHFGARTTQRE 192 Query: 180 LESNP 184 L Sbjct: 193 LSRRR 197 >gi|314923985|gb|EFS87816.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL001PA1] Length = 284 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + ++++ ++V + P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ +D + +G + I LA LI+ N + G Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTDVIG 135 Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKKKS 195 Query: 172 KRQDISKQLESNPD 185 +R+ ++ ++ + + Sbjct: 196 QRERVTDRMAAYAE 209 >gi|152977481|ref|YP_001376998.1| NADH dehydrogenase subunit J [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026233|gb|ABS24003.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus cytotoxicus NVH 391-98] Length = 174 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 1/170 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ SF A++ ++ V ++ + +L+F F++ AGL+ LL AEF+ + ++ Sbjct: 1 MTGELIAFFILSFTAVMGGVFMLNVTKVMHMMLALVFTFLSIAGLYFLLAAEFIGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + +F IM+ D E R + F +L ++ A + + F+ + Sbjct: 61 IYSGAITIIMIFGIMLTRHDAENESRISLRKII-VFLAVMLFGTVMYFAVHNIDFANQNT 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L N IG +LY++Y P E++ ILL++++GAIVL + Sbjct: 120 QDILPLHEQNTLQIGTLLYSKYVIPFELASVILLVALVGAIVLAKKDEEK 169 >gi|95928437|ref|ZP_01311185.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Desulfuromonas acetoxidans DSM 684] gi|95135708|gb|EAT17359.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Desulfuromonas acetoxidans DSM 684] Length = 170 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 97/166 (58%), Gaps = 1/166 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q FFYL +F+A++S F V++ +NPI S SL+ F A +++L A F+A + ++VY Sbjct: 4 LQLFFFYLVAFVAVVSGFCVISCKNPINSAISLVMTFFCLAIFYVMLHAPFMAAVQIMVY 63 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +F++M+L+ EV + F ++ +++V + V G ++ Sbjct: 64 AGAIMVLIIFVMMLLNQGSEVIARYRHAVTGAFIFAIVMLVQIVVILKDGGVSGPVGPIN 123 Query: 123 -RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +V +VE IGK ++T + P EI+ +LL++++GA+VL R Sbjct: 124 GDVVQSVGHVELIGKAMFTDFLLPFEIASILLLVAIVGAVVLAKRE 169 >gi|228994013|ref|ZP_04153915.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus pseudomycoides DSM 12442] gi|229000082|ref|ZP_04159652.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides Rock3-17] gi|228759619|gb|EEM08595.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides Rock3-17] gi|228765811|gb|EEM14463.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus pseudomycoides DSM 12442] Length = 170 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 1/165 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L S AII L++ + ++ + +L+F F++ AGL+ LL AEFV + +++Y GA Sbjct: 2 IAFFLLSLTAIIGGILMLNLTKVMHMMLALVFTFLSIAGLYFLLSAEFVGVAQILIYSGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + + +F IM+ D E R +L FF ++ ++ A N + F+ + Sbjct: 62 ITIIMIFGIMLTKHDAENESSFSFRKWL-IFFAVVVFGGVMYFAVNNIDFTNRSVQGSVP 120 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 N IG +LY++Y P E++ ILL++++GAIVL + ++ Sbjct: 121 LHEQNTLQIGTLLYSKYVIPFELTSVILLVALVGAIVLAKKDEKE 165 >gi|124515807|gb|EAY57316.1| putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum rubarum] Length = 169 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 91/163 (55%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ F F +IS+ VV RNPIYSV SL+ F++ AGL+++L AEF+A + L+VY Sbjct: 1 MQMAMFGYFGAAIVISALFVVYFRNPIYSVMSLLTMFMHIAGLYVILEAEFLAGVQLLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +LF++M+L++ +K+ + I + + + Sbjct: 61 AGAILVLYLFVVMLLNVQSRGRFIQKQTPAVVGLGILGIVEVVALIFHTRFYPELPAIPH 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 V N E IG VLYTQY +P EI+ +LL++++GAIVL Sbjct: 121 PGVPTLGNTETIGMVLYTQYLFPFEIASLVLLIALVGAIVLAK 163 >gi|312139317|ref|YP_004006653.1| NADH dehydrogenase (quinone) chain j nuoj [Rhodococcus equi 103S] gi|325676674|ref|ZP_08156349.1| NADH-quinone oxidoreductase subunit J [Rhodococcus equi ATCC 33707] gi|311888656|emb|CBH47968.1| NADH dehydrogenase (quinone) chain J NuoJ [Rhodococcus equi 103S] gi|325552529|gb|EGD22216.1| NADH-quinone oxidoreductase subunit J [Rhodococcus equi ATCC 33707] Length = 276 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 17/209 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ A++ + VV +YS L + A L++ GA F+ ++ +VV Sbjct: 22 TGEAVQFWILGTAAVLGALGVVCAPKAVYSAICLAMTMIVLAVLYIAQGALFLGVVQVVV 81 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA-----------AELIVCAS 110 Y GAV++ FLF++M++ +D + RG + + L A + V S Sbjct: 82 YTGAVMMLFLFVLMLIGVDSSDSLVETLRGQRIAAVVAGLGFGLLLIGGLGNATVGVLRS 141 Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-- 168 + F + + G NVE I ++++ +Y + E++G +L+ + IGA+VL R R Sbjct: 142 GEVGFVGLDQANS--ASGGNVEGIAELVFIRYVWVFEMTGALLITATIGAMVLAHRERFE 199 Query: 169 RDIKRQDISKQLESN--PDNSIVMVKVKS 195 R + ++++SKQ + D S + + S Sbjct: 200 RRLGQREMSKQRFRDWGADESARVTPLPS 228 >gi|253702586|ref|YP_003023775.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M21] gi|251777436|gb|ACT20017.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M21] Length = 167 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 1/166 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+S+FF + + +A+ISS LVVT +NPI S SL+ F A +++L A F+A ++VY Sbjct: 1 MESIFFLVVAAVAVISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 GA++V +F+IM+L++ E + GS + L + + M + Sbjct: 61 AGAIMVLIIFVIMLLNVKAESGKRGSHAVIAGSVLGLFALFQTVWFISKGSMTGATGTMD 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +VE IGK L+T + P EI+ +LL +++GA++L + Sbjct: 121 KAQIVSVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVILAKKK 166 >gi|163848449|ref|YP_001636493.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus aurantiacus J-10-fl] gi|222526377|ref|YP_002570848.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus sp. Y-400-fl] gi|163669738|gb|ABY36104.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus aurantiacus J-10-fl] gi|222450256|gb|ACM54522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus sp. Y-400-fl] Length = 168 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 89/167 (53%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + + +AII + ++ RN ++S L+ F A LFLLL A F+ I L VY Sbjct: 1 MELILFLITALIAIIGAVAMLVSRNAVHSALFLLLNFAAIAVLFLLLNAPFLFAIQLTVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF++M+L + P + + LA +I + S Sbjct: 61 AGAIMVLFLFVVMLLGAEKVEDTPDQIPWQQPLALLLGLALLVISVVVGLGGATNPPPES 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + ++ + +G +L+T Y P E++GFILL+++IG +VL R R+ Sbjct: 121 EALAQFSDPQTLGALLFTDYLLPFEVTGFILLIAVIGVVVLNQRGRK 167 >gi|22298211|ref|NP_681458.1| NADH dehydrogenase subunit J [Thermosynechococcus elongatus BP-1] gi|22294390|dbj|BAC08220.1| NADH dehydrogenase subunit 6 [Thermosynechococcus elongatus BP-1] Length = 200 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 89/164 (54%), Gaps = 3/164 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++ F+ + II++ VV + N +YS F L F++ AGL++L+ A+FV+ +++YV Sbjct: 8 QTITFFALAAAVIIAALGVVLLDNVVYSAFLLGGVFLSIAGLYILMNADFVSAAQILIYV 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV V LF IM+++ +L +++ + + M+ +LS Sbjct: 68 GAVNVLILFAIMLVNKRETYTP--VPGRWLRQGGAAVVSLGVFALLTK-MILQTPWQLSS 124 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +++ IG+ ++ + P E++ +LL+++IGA+VL R Sbjct: 125 VPPTPDSITTIGQHFFSDFLLPFELASVLLLMALIGAVVLARRE 168 >gi|86608754|ref|YP_477516.1| NADH dehydrogenase subunit J [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557296|gb|ABD02253.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 6 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 202 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + S MAI + VV + +YS F L F++ AGL+LLL A+FVA +++Y Sbjct: 7 VQLVTFVVLSAMAIGFALGVVWAPSIVYSGFLLGGVFLSMAGLYLLLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF IM+++ A K G+L + ++ L + + + Sbjct: 67 VGAVNVLILFAIMLVNRRYNFAP--LKLGWLRNGVTAVVCLGLFALLAAMALNTPWPL-- 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + ++V IG ++ Y P E++ +LL+++IGAIVL R Sbjct: 123 QPIQPLSSVLVIGGHFFSDYLLPFELASVLLLMALIGAIVLARRE 167 >gi|209522710|ref|ZP_03271268.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arthrospira maxima CS-328] gi|209496759|gb|EDZ97056.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arthrospira maxima CS-328] Length = 208 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 2/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F L + M I S+ VV ++N +YS F L F++ AGL+LLL A+FVA +++Y Sbjct: 9 VQVVSFGLLTIMMIGSALGVVLLKNIVYSAFLLGGVFMSMAGLYLLLNADFVAAAQVLIY 68 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VG+V V LF IM+++ + L ++ L S ++ + + Sbjct: 69 VGSVNVLILFGIMLVNKQQDFR--VLPNAGLRQIATAVVCVGLFALLSTMVLSTPWSVTT 126 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +V ++ IG+ +T + P E++ LL++M+GAIVL R Sbjct: 127 TVVTIESSAIAIGEHFFTDFLLPFELASVFLLMAMVGAIVLARR 170 >gi|254796410|ref|YP_003081246.1| NADH dehydrogenase i, j subunit [Neorickettsia risticii str. Illinois] gi|254589647|gb|ACT69009.1| NADH dehydrogenase i, j subunit [Neorickettsia risticii str. Illinois] Length = 189 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 111/195 (56%), Gaps = 12/195 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +L +AI SSF VV+ RN +++V L+ AF ++ L L G E ++++ LVVYVGA Sbjct: 3 ILCFLLVLVAIFSSFRVVSCRNVVHAVLYLVLAFFTSSVLLLAAGLEVLSLMLLVVYVGA 62 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + + FLF++MML+ D + ++G FI +L L++ + + ++ Sbjct: 63 IAILFLFVVMMLNSDDFKKGVEMSVAKYVGLLFIALLPFFLVL---------SSYDDTQQ 113 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 ++++IG VLYT Y Y +SG +LLL+M+ AI + L + D K Q + +Q+ + Sbjct: 114 ERTYVSIKDIGAVLYTDYVYLFHLSGVVLLLAMVAAISIALPSKSDTKCQVVREQISRS- 172 Query: 185 DNSIVMVKVKSGKGI 199 + + ++ V SGKG+ Sbjct: 173 -SVVRLLNVPSGKGV 186 >gi|206602051|gb|EDZ38533.1| Putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum sp. Group II '5-way CG'] Length = 169 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 90/163 (55%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ F F +IS+ VV RNPIYSV SL+ F++ AGL+++L AEF+A + L+VY Sbjct: 1 MQMAMFGYFGAAIVISALFVVYFRNPIYSVMSLLTMFMHIAGLYVILEAEFLAGVQLLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +LF++M+L++ +K+ + I + + Sbjct: 61 AGAILVLYLFVVMLLNVQSRGRFIQKQTPVVVGLGILGIVEVAALIFRTRFYPELPAIPH 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 V N E IG VLYTQY +P EI+ +LL++++GAIVL Sbjct: 121 PGVPTLGNTETIGMVLYTQYLFPFEIASLVLLIALVGAIVLAK 163 >gi|251773158|gb|EES53711.1| putative NADH dehydrogenase (ubiquinone), chain J [Leptospirillum ferrodiazotrophum] Length = 173 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 1/168 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q L F+ F MA++ + LVVT R IYS +L+ FV+ AGLF++L A F+A + L+VY Sbjct: 2 IQQLPFFYFGGMALVCAILVVTSRVAIYSAMALLGMFVHVAGLFIILEAPFLAGVQLLVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGEL 121 GA++V +LF++M+L++ A +K+ I EL + Sbjct: 62 AGAILVLYLFVVMLLNLQGGGATSLQKQTPWAIALSLIAVGELGYLLVKTNFYPKLPAIP 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V N E IG VLYTQY +P E++ +LL++++GAIV+ R Sbjct: 122 HPSVPTLGNTETIGMVLYTQYLFPFEVASIVLLIALVGAIVMARGRGR 169 >gi|109156463|ref|YP_654358.1| NADH dehydrogenase subunit 6 [Mussa angulosa] gi|109156491|ref|YP_654345.1| NADH dehydrogenase subunit 6 [Colpophyllia natans] gi|108744096|gb|ABG02319.1| NADH dehydrogenase subunit 6 [Colpophyllia natans] gi|108744110|gb|ABG02332.1| NADH dehydrogenase subunit 6 [Mussa angulosa] Length = 186 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 8/187 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++L F F I+S +VV+ NP+ S+F L+ FVN+A FL L +F+A++ L+VY Sbjct: 1 MEALIFCFF-LSTIVSGIMVVSALNPVLSIFWLVLVFVNSAVFFLWLEVDFLALMFLLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--CASNFMVF----- 115 VGA+ V FLF++M+L++ R++ +G L AS++ + Sbjct: 60 VGAIAVLFLFVVMLLNLTDYPPVFREEVDMTNYMPVGFLIGGFFFSEIASSWSIIFPRVE 119 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 S + + +N+E +G+VLY ++GF+LL++M+G IVL K+QD Sbjct: 120 SWDLSFPWFLVSYHNIEALGQVLYIPCFCLFFLAGFVLLVAMVGVIVLTQELEPLTKKQD 179 Query: 176 ISKQLES 182 + Q+ Sbjct: 180 LFIQINR 186 >gi|91203928|emb|CAJ71581.1| similar to NADH dehydrogenase I subunit J [Candidatus Kuenenia stuttgartiensis] Length = 169 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 97/171 (56%), Gaps = 9/171 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+ + +++++ ++ +NPIY L+F+F+N A L++LL A+F+A + ++VY Sbjct: 1 MEPYLFYVMAATSVVAALYLIFEKNPIYCALYLVFSFLNIAVLYVLLEAQFIAAVQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-- 120 GA++V FLF+IM+L + +E ++K G ++ +++ + S + Sbjct: 61 TGAIMVLFLFVIMLLMTN---SEQKQKDGLPFQRIPAMVLGLVLLIIMGLTIKSKLFQGR 117 Query: 121 ----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 S V + + +GK+L+T Y P E++ +L +++IGAI+L R Sbjct: 118 EGIYTSAKVESIGHTQLVGKLLFTDYLLPFEMTSVLLFVAVIGAIILAKRK 168 >gi|296140860|ref|YP_003648103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tsukamurella paurometabola DSM 20162] gi|296028994|gb|ADG79764.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tsukamurella paurometabola DSM 20162] Length = 256 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 3/171 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ + A++ + VV +YS L + A +L GA F+ ++ +V Sbjct: 1 MTGEEVAFWVVAVPAVLFALGVVVASKAVYSALCLAATMILLAVAYLSQGAMFLGVVQVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG 119 VY GAV++ FLF++M++ +D + RG + + G L+V V Sbjct: 61 VYTGAVMMLFLFVVMLVGVDSSDSLVETLRGHRVAAAVAGTGFGLLLVTLLARAVLPVPR 120 Query: 120 ELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + + N+VE + ++ +Y + E++ +L+ + +GA++L R + Sbjct: 121 PVDGVAPQYPPNSVEALADTVFVRYVWAFELTAALLITATLGAMILAHREK 171 >gi|289425611|ref|ZP_06427383.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes SK187] gi|289427016|ref|ZP_06428735.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes J165] gi|289153912|gb|EFD02605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes SK187] gi|289159838|gb|EFD08023.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes J165] gi|313763293|gb|EFS34657.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL013PA1] gi|313802890|gb|EFS44103.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL110PA2] gi|313806336|gb|EFS44852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL087PA2] gi|313813683|gb|EFS51397.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL025PA1] gi|313814967|gb|EFS52681.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL059PA1] gi|313819447|gb|EFS57161.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL046PA2] gi|313821253|gb|EFS58967.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL036PA1] gi|313822292|gb|EFS60006.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL036PA2] gi|313826150|gb|EFS63864.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL063PA1] gi|313829361|gb|EFS67075.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL063PA2] gi|313838158|gb|EFS75872.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL086PA1] gi|314916747|gb|EFS80578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL005PA4] gi|314919127|gb|EFS82958.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL050PA1] gi|314921207|gb|EFS85038.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL050PA3] gi|314925999|gb|EFS89830.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL036PA3] gi|314930365|gb|EFS94196.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL067PA1] gi|314956148|gb|EFT00544.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL027PA1] gi|314959681|gb|EFT03783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL002PA1] gi|314962255|gb|EFT06356.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL002PA2] gi|314963231|gb|EFT07331.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL082PA1] gi|314969774|gb|EFT13872.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL037PA1] gi|314979340|gb|EFT23434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL072PA2] gi|314986328|gb|EFT30420.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL005PA2] gi|314988575|gb|EFT32666.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL005PA3] gi|315079692|gb|EFT51680.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL053PA2] gi|315083917|gb|EFT55893.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL027PA2] gi|315085054|gb|EFT57030.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL002PA3] gi|315089483|gb|EFT61459.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL072PA1] gi|315098095|gb|EFT70071.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL059PA2] gi|315102687|gb|EFT74663.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL046PA1] gi|315108829|gb|EFT80805.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL030PA2] gi|327325718|gb|EGE67515.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL096PA3] gi|327447749|gb|EGE94403.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL013PA2] gi|327451640|gb|EGE98294.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL087PA3] gi|327452293|gb|EGE98947.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL083PA2] gi|328752126|gb|EGF65742.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL025PA2] gi|328755070|gb|EGF68686.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL020PA1] gi|328757018|gb|EGF70634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL087PA1] Length = 284 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + ++++ ++V + P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ +D + +G + I LA LI+ N + G Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGVIG 135 Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195 Query: 172 KRQDISKQLESNPD 185 +R+ ++ ++ + + Sbjct: 196 QRERVTDRMAAYAE 209 >gi|332676320|gb|AEE73136.1| NADH-quinone oxidoreductase subunit J [Propionibacterium acnes 266] Length = 284 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + ++++ ++V + P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ +D + +G + I LA LI+ N + G Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILVVGNAVTTGVIG 135 Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195 Query: 172 KRQDISKQLESNPD 185 +R+ ++ ++ + + Sbjct: 196 QRERVTDRMAAYAE 209 >gi|327333131|gb|EGE74858.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL097PA1] Length = 284 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + ++++ ++V + P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ +D + +G + I LA LI+ N + G Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGVIG 135 Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDHPVGLGQANAAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195 Query: 172 KRQDISKQLESNPD 185 +R+ ++ ++ + + Sbjct: 196 QRERVTDRMAAYAE 209 >gi|313793599|gb|EFS41639.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL110PA1] gi|327452510|gb|EGE99164.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL092PA1] Length = 284 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + ++++ ++V + P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ +D + +G + I LA LI+ N + G Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGVIG 135 Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDHPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195 Query: 172 KRQDISKQLESNPD 185 +R+ ++ ++ + + Sbjct: 196 QRERVTDRMAAYAE 209 >gi|196249744|ref|ZP_03148440.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. G11MC16] gi|196210620|gb|EDY05383.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. G11MC16] Length = 173 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 1/172 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F+L + AI ++ + N ++ V +L+ F+ AGL++LL AEFVA++ ++ Sbjct: 1 MSGTDIAFFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + LF IM+ + E + G I + A F + + Sbjct: 61 IYSGAITIIMLFAIMLTRHHADDKERQTTGGVWHRAVAAI-SVLAFGLAVYFGIRRLDFG 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +N IGK LY+ Y P EI ILL+++IGAIVL + + + Sbjct: 120 ADGSALATDNAREIGKWLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAE 171 >gi|322421841|ref|YP_004201064.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M18] gi|320128228|gb|ADW15788.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M18] Length = 167 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 1/166 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+S+FF + + +AIISS LVVT +NPI S SL+ F A +++L A F+A ++VY Sbjct: 1 MESIFFLVVAAVAIISSILVVTCKNPINSALSLVMTFFCLATFYVMLDAPFMAATQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS-FFIGILAAELIVCASNFMVFSAEGEL 121 GA++V +F+IM+L++ +E + GS + IL + M Sbjct: 61 AGAIMVLIIFVIMLLNVRVETVKRGTHAVLAGSALGLFILFQTIWFLMKGSMTGQVGDMT 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +VE IGK L+T + P EI+ +LL +++GA++L + Sbjct: 121 KEQIVSVGHVELIGKALFTDFLLPFEITSVLLLAAIVGAVILAKKK 166 >gi|295131451|ref|YP_003582114.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes SK137] gi|291376680|gb|ADE00535.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes SK137] gi|313773339|gb|EFS39305.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL074PA1] gi|313810758|gb|EFS48472.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL083PA1] gi|313831069|gb|EFS68783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL007PA1] gi|313833199|gb|EFS70913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL056PA1] gi|314973947|gb|EFT18043.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL053PA1] gi|314976875|gb|EFT20970.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL045PA1] gi|314984997|gb|EFT29089.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL005PA1] gi|315081020|gb|EFT52996.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL078PA1] gi|315097698|gb|EFT69674.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL038PA1] gi|327330834|gb|EGE72579.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL096PA2] gi|327442873|gb|EGE89527.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL043PA2] gi|327445265|gb|EGE91919.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL043PA1] gi|328761554|gb|EGF75072.1| NADH dehydrogenase I, J subunit [Propionibacterium acnes HL099PA1] Length = 284 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + ++++ ++V + P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ +D + +G + I LA LI+ N + G Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGVIG 135 Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDHPVGLGQASTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195 Query: 172 KRQDISKQLESNPD 185 +R+ ++ ++ + + Sbjct: 196 QRERVTDRMAAYAE 209 >gi|138896927|ref|YP_001127380.1| NADH dehydrogenase subunit J [Geobacillus thermodenitrificans NG80-2] gi|134268440|gb|ABO68635.1| NADH dehydrogenase I, J subunit [Geobacillus thermodenitrificans NG80-2] Length = 173 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 1/172 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F+L + AI ++ + N ++ V +L+ F+ AGL++LL AEFVA++ ++ Sbjct: 1 MSGTDIAFFLLALAAIAGGVTMLQLTNVVHMVIALVMTFLGIAGLYVLLSAEFVAVVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + LF IM+ + E + G I + A F + + Sbjct: 61 IYSGAITIIMLFAIMLTRHHADDKERQTTGGVWHRAVAAI-SVLAFGLAVYFGIRRLDFG 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +N IGK LY+ Y P EI ILL+++IGAIVL + + + Sbjct: 120 ADGSALAADNAREIGKWLYSYYTIPFEIVSVILLVALIGAIVLAKKDGKGAE 171 >gi|300864217|ref|ZP_07109101.1| NADH dehydrogenase subunit J [Oscillatoria sp. PCC 6506] gi|300337791|emb|CBN54247.1| NADH dehydrogenase subunit J [Oscillatoria sp. PCC 6506] Length = 209 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 3/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F L + M I ++ VV N +YS F L F++ AG++LLL A+FVA +++Y Sbjct: 7 VQIVSFGLLAVMMIAAALGVVLFSNIVYSAFLLAGVFMSIAGIYLLLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121 VGAV V LF IM+++ + ++ ++ L ++ + Sbjct: 67 VGAVNVLILFAIMLVNKREDFR--AISNAWVRKAATAVVCVALFALLGTMVLSTPWAIST 124 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + L +++ IGK +T + P E++ LL++M+GAI+L R Sbjct: 125 ATLPAGESSIVVIGKHFFTDFLLPFELASVFLLMAMVGAIILARR 169 >gi|258593428|emb|CBE69767.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) (NDH-1, chain J) [NC10 bacterium 'Dutch sediment'] Length = 168 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 97/168 (57%), Gaps = 4/168 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L F + MA++++ LV+ +RNP+Y SL+ F+ +G++LLL A+F+A++ ++VY Sbjct: 1 MEWLVFVPLAAMALVTAALVIVLRNPVYCALSLVGTFLALSGIYLLLQAQFIAVVQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIE----VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 GA++V FLF++M+LD+ E + R + +L I SN Sbjct: 61 AGAIMVLFLFVVMLLDLGHELPAWLQRDRSRFLLGVGAAALLLLELAIPIGSNDSRAPQG 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S +V N + +G++L+T + P EI+ ILL+++IGA+VL R Sbjct: 121 PYTSEVVGAIGNAQLVGRLLFTDFLIPFEITSVILLIAIIGAMVLARR 168 >gi|88608358|ref|YP_505913.1| NADH dehydrogenase I, J subunit [Neorickettsia sennetsu str. Miyayama] gi|88600527|gb|ABD45995.1| NADH dehydrogenase I, J subunit [Neorickettsia sennetsu str. Miyayama] Length = 189 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 110/194 (56%), Gaps = 10/194 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + +AI SSF VV+ RN +++V L+ AF ++ L L+ G E ++++ LVVYVGA Sbjct: 3 ILCFSLVLVAIFSSFRVVSCRNVVHAVLYLVLAFFTSSVLLLVSGLEVLSLMLLVVYVGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + + FLF++MML+ D + K G + ++G+L L+ + + + Sbjct: 63 IAILFLFVVMMLNSD----DFEKGIGMSVAKYVGLLFMALLPFFLVLSSYDDTQQERAYI 118 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 +++IG VLYT Y Y +SG +LLL+M+ AI + L +RD K Q + +Q+ + Sbjct: 119 G----IKDIGAVLYTDYVYLFHLSGVVLLLAMVAAISIALPSKRDTKCQVVKEQISRS-- 172 Query: 186 NSIVMVKVKSGKGI 199 + + ++ V SGKG+ Sbjct: 173 SVVRLLNVPSGKGV 186 >gi|10802936|gb|AAG23684.1|AF288091_29 NADH dehydrogenase subunit 6 [Thraustochytrium aureum] Length = 204 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 110/204 (53%), Gaps = 12/204 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ F +FSF +SSF V+ V P+ +V SLIF+F NAAGL + AEF+A++ L+VY Sbjct: 1 MEFFLFCVFSFGLCVSSFNVIFVNKPVNAVLSLIFSFCNAAGLLFMAEAEFIAILFLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--------CASNFMV 114 +GA+ V FLF+I+ML++ + F +L ++ Sbjct: 61 IGAIAVLFLFVIIMLNLKNIFFTEKFNESFPIILIFSLLFFIILFFNQLTFYSFEVTLFE 120 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH----RRD 170 + +L+ N++ G+VLYT Y L I+GFILL+++I +I+L ++D Sbjct: 121 LPSHIHWIKLIDSIGNIDLFGQVLYTYYFTYLLIAGFILLVAIIASIILTSNKSFLLKKD 180 Query: 171 IKRQDISKQLESNPDNSIVMVKVK 194 K+Q I QL NP+ ++ ++K K Sbjct: 181 FKKQLIFSQLSRNPNKAVFLIKKK 204 >gi|50843377|ref|YP_056604.1| NADH dehydrogenase subunit J [Propionibacterium acnes KPA171202] gi|50840979|gb|AAT83646.1| NADH dehydrogenase I chain J [Propionibacterium acnes KPA171202] gi|315107933|gb|EFT79909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL030PA1] Length = 284 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 96/194 (49%), Gaps = 10/194 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + ++++ ++V + P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ +D + +G + I LA LI+ N + G Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALAFVVLLILAVGNAVTTGVIG 135 Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDYPVGLGQANTAGGNNVKSLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKS 195 Query: 172 KRQDISKQLESNPD 185 +R+ ++ ++ + + Sbjct: 196 QRERVTDRMAAYAE 209 >gi|309792511|ref|ZP_07686975.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oscillochloris trichoides DG6] gi|308225499|gb|EFO79263.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oscillochloris trichoides DG6] Length = 196 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 1/170 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L S + I ++ +VVTVRN I++ LI +F A L+LLL AEF+A++ ++VYVG Sbjct: 6 QIIFGLLSALVIGAAMMVVTVRNVIHAALWLIASFFGVAALYLLLEAEFIAVVQVLVYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A+ + LF IM+ + K +G+ + + + Sbjct: 66 AISILILFAIMLTRSNEGDRLLTKYWWASALIALGLFGVAFLPTFTGTTWNMPQPTGPAG 125 Query: 125 VFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + VE +G+ +++ EI+G +L +++IGAIV+ R +R Sbjct: 126 TPEVLSGVEELGRGFVSEFVLHFEIAGVLLTVALIGAIVIAFEERSRRRR 175 >gi|109156547|ref|YP_654332.1| NADH dehydrogenase subunit 6 [Astrangia sp. JVK-2006] gi|108744082|gb|ABG02306.1| NADH dehydrogenase subunit 6 [Astrangia sp. JVK-2006] Length = 186 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 7/175 (4%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 I S +VV+ NP+ S+F L+ FVN+A FLLLG +F+A++ L+VYVGA+ V FLF++ Sbjct: 12 TIGSGIMVVSALNPVLSIFWLVLVFVNSAVFFLLLGVDFLALMFLLVYVGAIAVLFLFVV 71 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF-------SAEGELSRLVFK 127 M+L++ R++ IG L F S + + Sbjct: 72 MLLNLTDYPPVFREEIDMTNYIPIGFLIGVFFFSEIASSWFIISPRVESWDLSFPWFLVS 131 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 +N+E +G+VLY ++ F+LL++MIG IVL K+QD+ Q+ Sbjct: 132 YHNIEALGQVLYVACFCLFLLASFVLLVAMIGVIVLTQETEPLTKKQDLFIQINR 186 >gi|133900542|gb|ABO41437.1| NADH dehydrogenase subunit 6 [Rafflesia pricei] Length = 181 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F +GL LLLG + AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRETSGLLLLLGLDLSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILYKETLPLLPTQRKTTSLRYTVYAEKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 ++E +G +LYT Y + +LL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTHLETLGNLLYTYYFVWFLVPSLLLLVAMIGAIVLTMHRTTHSAVKRQDLFRRNAIDF 179 >gi|188996810|ref|YP_001931061.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfurihydrogenibium sp. YO3AOP1] gi|188931877|gb|ACD66507.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfurihydrogenibium sp. YO3AOP1] Length = 176 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 2/167 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ F++ S +A+IS+ VV RN +Y+V SLI + +GLF LGAE V + ++ Sbjct: 1 MELSAVAFWVLSTIAVISAIGVVFFRNIVYAVLSLISTLIAISGLFFNLGAELVGALQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y A++VF++ +I + + K L F IL EL + + S +G Sbjct: 61 IYAVAIVVFYVLVISTVP-QYKGQAIDPKYTLLSLPFGFILFLELAYVSIYGLWASNKGI 119 Query: 121 LSRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S +F K +N + + +L+T+Y +P E++ ILL++MIGAI+L + Sbjct: 120 FSPDIFTKISNAKAVASLLFTKYLFPFEVASLILLVAMIGAILLGRK 166 >gi|225848114|ref|YP_002728277.1| NADH-quinone oxidoreductase subunit j [Sulfurihydrogenibium azorense Az-Fu1] gi|225643991|gb|ACN99041.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit j) (ndh-1 subunit j) [Sulfurihydrogenibium azorense Az-Fu1] Length = 177 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 2/167 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S +A++S+ VV RN +YSV SLI A + +GLF LGAE + + ++ Sbjct: 1 MELSVVAFWVLSTIAVLSAIGVVFFRNIVYSVLSLISALIAISGLFFNLGAELIGALQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y A++VF++ +I + + K L + F IL EL + + S G Sbjct: 61 IYAVAIVVFYVLVISTVP-QYKGEAVDPKYALLSAPFGFILFLELAYVSVYGLWASNTGI 119 Query: 121 LSRLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S +F + +N + + +L+T+Y +P E++ ILL++MIGAI+L + Sbjct: 120 FSPDIFNQISNAKAVATLLFTKYLFPFEVASLILLVAMIGAILLGRK 166 >gi|269836330|ref|YP_003318558.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphaerobacter thermophilus DSM 20745] gi|269785593|gb|ACZ37736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphaerobacter thermophilus DSM 20745] Length = 242 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 91/177 (51%), Gaps = 4/177 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + L F + +A++++ VV R P++S SL+ +FVN A ++++L AEF+A ++ Sbjct: 1 MSAEVLVFDILGAVAVLAAAGVVLARKPVHSALSLVVSFVNVAAIYVILRAEFLAAAQII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 VY GA++V LF+IM++ + P ++ L + + + + Sbjct: 61 VYTGAILVLVLFVIMLVHPEDLPEFHGGRPIQRVLALILGLVLLGEVLAAILTRTVVGQP 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + G N + +G+VLY+ Y P++ + +LL++ IGA+VL ++R Sbjct: 121 GPWSEQAVQAVGGNTQALGQVLYSGYVLPIQATALLLLVATIGALVLARPETPRVRR 177 >gi|124484827|ref|YP_001031209.1| NADH dehydrogenase subunit 6 [Amphimedon queenslandica] gi|113952599|gb|ABI48998.1| NADH dehydrogenase subunit 6 [Amphimedon queenslandica] Length = 197 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 8/179 (4%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++S+ V++ P+Y+V LI AF++ + +F+ +G ++ I ++VYVGA+ + FLF Sbjct: 2 IWGVVSAVKVISAVRPVYAVLWLISAFLSVSAVFIFIGLVYMGFIMIIVYVGAIAILFLF 61 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-VFSAEGELSRLVF---KG 128 ++MMLD E A +G+ + ++ + + SR + G Sbjct: 62 VMMMLDQGKEEAGTPIVNIIPMGMIVGVGFLWVAATGGEWVGAYITQQNHSRGMIGGQPG 121 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR----DIKRQDISKQLESN 183 ++ IG+V+YT+Y+Y I +ILL++M+GAIVL RH + RQD+ Q + Sbjct: 122 GDIVAIGRVVYTEYSYMFIIVSYILLVAMVGAIVLTHRHGEYGPDEPMRQDVYIQTSRD 180 >gi|257852680|gb|ACV71352.1| NADH dehydrogenase subunit 6 [Rafflesia tuan-mudae] Length = 180 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 13/179 (7%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F +GL LLLG + AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFPILVFRETSGLLLLLGLDLSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGE----------LSRLVFK 127 I I R S IG IL E+ + + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLILWWEMFFILYKETLPLLPTQRKTTSLRYTVYAEKVRS 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNP 184 ++E +G +LYT Y + +LL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTHLETLGNLLYTYYFVWFLVPSILLLVAMIGAIVLTMHRTTHSAVKRQDLFRRNAIDF 179 >gi|164421017|ref|YP_001648538.1| NADH dehydrogenase subunit 6 [Iotrochota birotulata] gi|158938947|gb|ABW83873.1| NADH dehydrogenase subunit 6 [Iotrochota birotulata] Length = 183 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 4/177 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +FS I +V++ N ++SV I AF++A LF+ L +F+A+I L+VYVGA+ + Sbjct: 7 VFSMSLIFXGIMVISALNSVHSVLWXIVAFISAXVLFIFLEVDFIALIFLIVYVGAIAIL 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS----RLV 125 FLF+IMML++ F IG++ ++ S++ V G S + Sbjct: 67 FLFVIMMLNLTDLKGLLDMSNYMPAGFMIGLVVFFEVLIYSSWGVSDLSGGRSYFRWDFI 126 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 K N++ +G +LYT YAY ++ FILL++MIG IVL +IKRQ+ Q+ Sbjct: 127 EKVTNIQGLGCILYTDYAYLFILASFILLVAMIGVIVLTFSISAEIKRQEGFIQISR 183 >gi|229490769|ref|ZP_04384604.1| NADH-quinone oxidoreductase, j subunit nuoj [Rhodococcus erythropolis SK121] gi|229322159|gb|EEN87945.1| NADH-quinone oxidoreductase, j subunit nuoj [Rhodococcus erythropolis SK121] Length = 265 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 1/167 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+IS+ VV +YS L + A +++ GA F+ ++ +VV Sbjct: 20 TGEAVQFWILGTLAVISALGVVAAPKAVYSALFLAMTMIILAVFYIVQGALFLGVVQIVV 79 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG S + I ++ S G Sbjct: 80 YTGAVMMLFLFVLMLVGVDSSDSLVETLRGQRVSAIV-IGVGFGLLLIGGLGNASISGFT 138 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 N++ + +++ +Y + E++G +L+ + +GA++L R + Sbjct: 139 GFTGLDQGNIDALADLIFIRYVWAFELTGALLITATLGAMMLAHREK 185 >gi|269128604|ref|YP_003301974.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Thermomonospora curvata DSM 43183] gi|268313562|gb|ACY99936.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermomonospora curvata DSM 43183] Length = 308 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 92/171 (53%), Gaps = 2/171 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F+L + +++ ++ +V +R ++S L ++ A L+ + A F+A + ++VY Sbjct: 22 EPVVFWLLAVVSVAAALGMVFLRKAVHSALMLAVVMLSLAVLYAVQDAPFLAFVQVIVYT 81 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFS-AEGEL 121 GAV++ FLF++M++ + + RG + + G+ A L++ S + G Sbjct: 82 GAVLMLFLFVLMLVGVSSTDSLVETIRGQRIWAAIAGLGFAVLVISGLGNAALSDSMGLA 141 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + G NV+ + ++L+T+Y + E++ +L+ + +GA+VL R R K Sbjct: 142 AANAEAGGNVQGLARLLFTKYVFAFEVTSALLITAALGAMVLAHRERTSPK 192 >gi|256425959|ref|YP_003126612.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga pinensis DSM 2588] gi|256040867|gb|ACU64411.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga pinensis DSM 2588] Length = 167 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 93/167 (55%), Gaps = 3/167 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q + F + S ++IIS+ V+ +NP+ SV LI F AG +++L A+F+A++ ++ Sbjct: 3 MSLQQIVFGVLSIISIISALGVILSKNPVTSVLCLIVTFFTIAGHYIMLNAQFLAVVHII 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V FLF+IM+++++ E+ ++ G +++ A + Sbjct: 63 VYAGAIMVLFLFVIMLMNLNAEIEPQKRNWLKYAGAISGGALLLVLLGALREADVTPLQP 122 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 S + +N +GK L+ QY P E+S + L +M+GA+V+ R Sbjct: 123 GSTDIGLISN---LGKTLFNQYVVPFEVSSILFLSAMVGAVVIGKRE 166 >gi|107736864|ref|YP_626491.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168915] gi|107736891|ref|YP_626504.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168916] gi|99866575|gb|ABF67623.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168915] gi|99866589|gb|ABF67636.1| NADH dehydrogenase subunit 6 [Discosoma sp. CASIZ 168916] Length = 204 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 59/202 (29%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F+ + S +V++ +P++S+F LI FV +A LFLLLG +FVA++ L++YVGA+ + Sbjct: 1 MLAFVIVGSGIMVISTLSPVHSIFWLIVVFVGSAALFLLLGVDFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRG------------FLGSFFIGILAAELIVCASNFMVFSA 117 FLF+IM+L++ + R G +G+FF +A+ ++ + ++ Sbjct: 61 FLFVIMLLNLTDFLPAFRWGGGEADMTNYAPIGLTIGTFFFSEVASSWLIVGGPYAHRTS 120 Query: 118 EG---------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 S + K +N+E +G++LY Y ++ ILL++MIG IVL Sbjct: 121 FWGERGGAWDLASSWFLMKYHNIEALGRILYIACYYLFILASLILLVAMIGGIVLTQEVG 180 Query: 169 RDI----KRQDISKQLESNPDN 186 ++ K+Q+I Q D Sbjct: 181 AEVGPLAKKQEIFLQTSRAYDK 202 >gi|56416877|ref|YP_153951.1| NADH dehydrogenase chain J [Anaplasma marginale str. St. Maries] gi|222475242|ref|YP_002563658.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str. Florida] gi|254995065|ref|ZP_05277255.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str. Mississippi] gi|255003226|ref|ZP_05278190.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str. Puerto Rico] gi|255004354|ref|ZP_05279155.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str. Virginia] gi|56388109|gb|AAV86696.1| NADH dehydrogenase chain J [Anaplasma marginale str. St. Maries] gi|222419379|gb|ACM49402.1| NADH dehydrogenase I chain J (nuoJ) [Anaplasma marginale str. Florida] Length = 200 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 118/202 (58%), Gaps = 11/202 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S F+ F+ +A++S+ VV + NP+YSV SLI F ++ +F++LGAE VAM+ ++VY Sbjct: 1 MLSFLFFCFAGVAVLSAVGVVLLPNPVYSVLSLILTFFVSSAVFIMLGAELVAMLLVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V FLF++MMLDI + + G + + +G+ L + VF A+ Sbjct: 61 VGAVAVLFLFVVMMLDISRVGS----RHGLVKHYPLGVACMFLFFGCMVYSVFHAKSSAV 116 Query: 123 RLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK-RQDIS 177 G +NV IG LYT+YAY +++G +LL++ +G+++L++ +QD+ Sbjct: 117 DGSGSGFGSVDNVFLIGLQLYTEYAYAFQLAGVLLLIAGVGSLILIVGGSSGRSLKQDVG 176 Query: 178 KQLESNPDNSIVMVKVKSGKGI 199 +Q+ + + I ++ + G G+ Sbjct: 177 QQVGRS--SRIKLLSPEVGVGV 196 >gi|226306205|ref|YP_002766165.1| NADH-quinone oxidoreductase chain J [Rhodococcus erythropolis PR4] gi|226185322|dbj|BAH33426.1| NADH-quinone oxidoreductase chain J [Rhodococcus erythropolis PR4] Length = 265 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 1/167 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ +A+IS+ VV +YS L + A +++ GA F+ ++ +VV Sbjct: 20 TGEAVQFWILGTLAVISALGVVAAPKAVYSALFLAMTMIILAVFYIVQGALFLGVVQIVV 79 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG S + I ++ S G Sbjct: 80 YTGAVMMLFLFVLMLVGVDSSDSLVETLRGQRVSAIV-IGVGFGLLLIGGLGNASISGFT 138 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 N++ + +++ +Y + E++G +L+ + +GA++L R + Sbjct: 139 GFTGLDQGNIDALADLIFIRYVWAFELTGALLITATLGAMMLAHREK 185 >gi|109156421|ref|YP_654308.1| NADH dehydrogenase subunit 6 [Ricordea florida] gi|108515291|gb|ABF93388.1| NADH dehydrogenase subunit 6 [Ricordea florida] Length = 201 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 106/201 (52%), Gaps = 24/201 (11%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F+ + S +V++ NP++S+F LI FV +A LFLLLG +FVA++ L++YVGA+ + Sbjct: 1 MLAFVIVGSGIMVISTLNPVHSIFWLIVVFVGSAVLFLLLGIDFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 FLF+IM+L++ + ++ +G FF +A+ ++ + ++ Sbjct: 61 FLFVIMLLNLADFPPAFRWGGEADMTNYAPIGLIIGVFFFSEVASSWLIVGGPYAHRASF 120 Query: 119 G---------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 S + K +N+E +G++LY Y ++ ILL++MIG IVL Sbjct: 121 WVEVGEAWDLACSWFLMKYHNIEALGRILYIACYYLFILASLILLVAMIGGIVLTQEVGS 180 Query: 170 DI----KRQDISKQLESNPDN 186 ++ K+Q+I Q +N Sbjct: 181 EVGPMAKKQEIFFQTSRIYEN 201 >gi|118602284|ref|YP_903499.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567223|gb|ABL02028.1| NADH dehydrogenase subunit J [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 202 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 114/204 (55%), Gaps = 10/204 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+ SF I+SS ++ RN +V L+ AF NAA +++LL AEF+A+ ++ Sbjct: 1 MNSEQIIFYILSFWFIVSSLAMIFSRNAAKAVLFLVLAFFNAASIWILLEAEFLAITLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-- 118 VYVGAV+V FLF+I ML+ID + F G +G++ A +IV + ++ + + Sbjct: 61 VYVGAVMVLFLFVIKMLNIDKST----LRAKFTGYLPLGLIVAAIIVAEMSLVLGANQFG 116 Query: 119 ----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 R +N+ + LYT Y YP E++ +LL+++I AI L+ R+ K+Q Sbjct: 117 LDVFSSPERHGMDYSNITVLAMQLYTTYVYPFELAAVLLLIAIIAAITLVYRNETSRKKQ 176 Query: 175 DISKQLESNPDNSIVMVKVKSGKG 198 IS+Q+ + + +V + KG Sbjct: 177 SISEQVNVQAKDRVRLVSITPSKG 200 >gi|218514978|ref|ZP_03511818.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli 8C-3] Length = 166 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LFS +++I++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFSAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ V + G L + + +L ++ + + E Sbjct: 61 VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLPALVLVVLLGVEMLVLVLWSDRFSVIE-P 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + G+ + + L+ Y P EI+ ILL++++GAIVL + Sbjct: 120 VAMRGGDQIRQLSTTLFADYLLPFEIASVILLVALVGAIVLARKE 164 >gi|218673002|ref|ZP_03522671.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli GR56] Length = 166 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 99/168 (58%), Gaps = 3/168 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ +++I++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFAAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF-FIGILAAELIVCASNFMVFSAEGEL 121 VGA++V FLF+IMM+D+ V + G L + +G+L E++V FS + Sbjct: 61 VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLSALVLVGLLGVEMLVLVLWSNRFSVIEPV 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + G+ + + L+ Y P EI+ ILL ++IGAIVL + + Sbjct: 121 A--MRGGDQIRQLSTTLFADYLLPFEIASVILLAALIGAIVLARKEQE 166 >gi|109156534|ref|YP_654295.1| NADH dehydrogenase subunit 6 [Rhodactis sp. CASIZ 171755] gi|108515262|gb|ABF93375.1| NADH dehydrogenase subunit 6 [Rhodactis sp. CASIZ 171755] Length = 203 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 57/201 (28%), Positives = 107/201 (53%), Gaps = 24/201 (11%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F+ + S +V++ +P++S+F LI FV +A LFLLLG +FVA++ L++YVGA+ + Sbjct: 1 MLAFVIVGSGIMVISTLSPVHSIFWLIVVFVGSAVLFLLLGIDFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 FLF+IM+L++ + ++ +G+FF +A+ ++ + ++ Sbjct: 61 FLFVIMLLNLTDFPPAFRWGGEADMTNYAPIGLTIGTFFFSEVASSWLIVGGPYAHRTSF 120 Query: 119 G---------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 S + K +N+E +G++LY Y ++ FILL++MIG +VL Sbjct: 121 WGERGGAWDLASSWFLMKYHNIEALGRILYIACYYLFILASFILLVAMIGGMVLTQEVGA 180 Query: 170 DI----KRQDISKQLESNPDN 186 ++ K+Q+I Q D Sbjct: 181 EVGPLAKKQEIFLQTSRAYDK 201 >gi|153799806|gb|ABS50634.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] gi|153799808|gb|ABS50635.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] Length = 171 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 11/170 (6%) Query: 30 YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I I Sbjct: 1 HSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVL 60 Query: 90 RGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFKGNNVENIGKVL 138 R S IG I E+ N + + + V N+E +G +L Sbjct: 61 RYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLL 120 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSI 188 YT Y+ + ILL++MIGAIVL + +KRQD+ ++ + +I Sbjct: 121 YTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDFRRTI 170 >gi|119714793|ref|YP_921758.1| NADH dehydrogenase subunit J [Nocardioides sp. JS614] gi|119535454|gb|ABL80071.1| NADH dehydrogenase subunit J [Nocardioides sp. JS614] Length = 275 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 89/190 (46%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F++ + + +I++ ++ VR +++ L ++ A L+ L A F+ + ++VY GA Sbjct: 2 IAFWILAPVMVIAALGLLFVRKAVHAALLLAVVMMSLAVLYAALEAPFLFAVQIIVYTGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +++ FLF++M++ +D + RG I L L++ + Sbjct: 62 ILMLFLFVLMLVGVDASDSVVETIRGQRVLAAIAGLGLGLVMVLGLSQISLGTAVGLEDA 121 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 G N++ + +L+++Y + E++ +L+ + +GA+VL R R K +S + D Sbjct: 122 NSGGNIQALANILFSRYVFAFEVTSALLITAAVGAMVLAHRERLTPKPTQMSLAAQRMKD 181 Query: 186 NSIVMVKVKS 195 + Sbjct: 182 YAERGTHPGP 191 >gi|300122800|emb|CBK23815.2| unnamed protein product [Blastocystis hominis] Length = 195 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 113/194 (58%), Gaps = 5/194 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L+F +F+ + IIS F+ ++V N +Y+V LI AF ++ + LL +++A++ +++Y Sbjct: 1 MSNLYFNIFASIIIISVFMTISVNNAVYAVLFLILAFFSSMCILFLLNIDYLALMFILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE---- 118 +GA+ + FLF++MML I I K F+ ++ +++ A F VF Sbjct: 61 IGAITILFLFVVMMLKIKINEKNTTKFISFINIIICCLIVYNVLLNADIFNVFLNNDLVY 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDIS 177 + ++ +N++ +G+V++T Y + ++GF+LL+ MI AI+L R I+R Q + Sbjct: 121 NDWFSKLYYVDNIKMLGQVIFTNYYFYFILAGFVLLIGMISAILLSKESTRVIRRYQLVY 180 Query: 178 KQLESNPDNSIVMV 191 +Q+ + N++ +V Sbjct: 181 QQISRDVSNAVFLV 194 >gi|314965049|gb|EFT09148.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL082PA2] Length = 284 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 93/194 (47%), Gaps = 10/194 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + ++++ ++V + P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVLAALVMVFAKKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ +D + E K L LI+ N + G Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAMIAALALVVLLILAVGNAVTTDVIG 135 Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 + GNNV+++ ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDHPVGLGQANAAGGNNVKSLAELVFTKYVLVFEATSALLITAAVGTMVLAHGEADKKKS 195 Query: 172 KRQDISKQLESNPD 185 +R+ ++ ++ + + Sbjct: 196 QRERVTDRMAAYAE 209 >gi|150375781|ref|YP_001312377.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium medicae WSM419] gi|150030328|gb|ABR62444.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium medicae WSM419] Length = 166 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 94/165 (56%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ ++++++ +V RNP++S +L+ F+ + +F++LGA +A+I + VY Sbjct: 1 MHQGFFLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ V + G L + + +L +V + E Sbjct: 61 VGAIMVLFLFVIMMVDVREAVLQRFMPGGNLPALALLLLLGTEMVVLVLWSDRFIE-SPP 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 G+ + ++ K L++ Y P EI+ ILL +++GAIVL + Sbjct: 120 VAERGGDAIRDLSKTLFSDYLLPFEIASVILLAALVGAIVLARKE 164 >gi|313836209|gb|EFS73923.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL037PA2] gi|314927644|gb|EFS91475.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL044PA1] gi|314971357|gb|EFT15455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium acnes HL037PA3] gi|328906294|gb|EGG26069.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Propionibacterium sp. P08] Length = 284 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 92/191 (48%), Gaps = 10/191 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F+L + + + ++ ++V R P++S SL + A + A F+ ++ ++V Sbjct: 16 TASQWAFWLLAPIMVCAALVIVFARKPVHSALSLAVVMICLAVQYASQEAPFLFVVQIIV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA--AELIVCASNFMVFSAEG 119 Y GA+++ FLF++M++ +D + +G + + LA LI+ N + G Sbjct: 76 YTGAILMLFLFVVMLVGVDSTDSLKETLKGHKVAAIVAALAFVVLLILAVGNAVTTGVIG 135 Query: 120 ELSRL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH--RRDI 171 + G+NV+ + ++++T+Y E + +L+ + +G +VL ++ Sbjct: 136 TDHPMGLGQANAAGGDNVKLLAELVFTKYVIVFEATSALLITAAVGTMVLAHGEADKKKT 195 Query: 172 KRQDISKQLES 182 +R+ ++ ++ Sbjct: 196 QRERVTDRMAV 206 >gi|218463312|ref|ZP_03503403.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli Kim 5] Length = 166 Score = 123 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 94/165 (56%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ ++++++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFATVSVVTALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ V + G L + + ++ ++ + + E Sbjct: 61 VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLLALVLVVVLGLEMLVLVLWSDRFSVIE-P 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + G+ + + L+ Y P EI+ ILL +++GAIVL + Sbjct: 120 VAMRGGDQIRQLSTTLFADYLLPFEIASVILLAALVGAIVLARKE 164 >gi|291285966|ref|YP_003502782.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Denitrovibrio acetiphilus DSM 12809] gi|290883126|gb|ADD66826.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Denitrovibrio acetiphilus DSM 12809] Length = 170 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 92/166 (55%), Gaps = 1/166 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ ++ F++ A++S+ ++T NP++S ++ F + AG+F+ L AEF+A I ++V Sbjct: 4 ILANIGFWVLGITAVVSALFLITRENPVHSALWMLLTFFSVAGIFVQLDAEFIAAIQVMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-MVFSAEGE 120 Y GA++V ++F++M+L+ + LG I+ ++++ ++ +A+ Sbjct: 64 YAGAILVLYMFVVMLLNPKSNGFIKMPFKVVLGGIVAFIVFLQIVMTLMGADIIKTAKLT 123 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 NV+ G L+T Y P EI +LL++MIGAIV+ + Sbjct: 124 GIADPHNFGNVKMFGIDLFTTYLVPFEIVSIMLLVAMIGAIVIAKK 169 >gi|254445138|ref|ZP_05058614.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Verrucomicrobiae bacterium DG1235] gi|198259446|gb|EDY83754.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Verrucomicrobiae bacterium DG1235] Length = 167 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 1/168 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M LFFY+F+ + + +F VV RNP+ + LI F+ A LF++L A F+A+I ++VY Sbjct: 1 MTDLFFYIFAAITLACAFAVVFSRNPVNAAMFLILTFLGMASLFVMLEAYFLAVIQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+V FLFIIM+LD+ E K + S + +V ++ A E Sbjct: 61 AGAVVVLFLFIIMLLDVKEESKAKLKPLTLVASVIGFAILLVGVVGITSSDNIKATTETL 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 ++N G L+T Y P++++GF+LL++MIG IVL R + D Sbjct: 121 PEAAGAT-LKNFGYELFTTYQLPMQVTGFLLLVAMIGVIVLSKRVKTD 167 >gi|190893206|ref|YP_001979748.1| NADH-ubiquinone oxidoreductase, chain J [Rhizobium etli CIAT 652] gi|190698485|gb|ACE92570.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli CIAT 652] Length = 166 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 94/165 (56%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LFS +++I++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFSAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ V + G L + + +L ++ + + E Sbjct: 61 VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLPALVLVVLLGVEMLVLVLWSDRFSVIE-P 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + G+ + + L+ Y P EI+ ILL +++GAIVL + Sbjct: 120 VAMRGGDQIRQLSTTLFADYLLPFEIASVILLAALVGAIVLARKE 164 >gi|118340560|gb|ABK80610.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6 subunit J [uncultured marine Nitrospinaceae bacterium] Length = 169 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 2/167 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L FY + ++ + VV +P+ S SLI + AG+F+L A F+A++ +++Y Sbjct: 1 MELLIFYPLAGFCVVLALGVVFNNSPVGSAISLIGMMLGLAGIFILQQAHFIAILQIIIY 60 Query: 63 VGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA++V F+F+IM+L++ + ++R L S GILA ++ S+ + Sbjct: 61 AGAIMVLFMFVIMLLNLKKGDDAGWISRERNLLLSVLTGILATGILYKVSDIIFTRKMNT 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + L V IG+ L+T + P E++ +LL +M+GA+VL Sbjct: 121 PAILTDSFGTVAVIGETLFTDFVLPFEVASILLLAAMVGAVVLAKTK 167 >gi|301353210|ref|YP_003795207.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae] gi|301353240|ref|YP_003795237.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae] gi|290573158|gb|ADD46345.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae] gi|290573188|gb|ADD46375.1| NADH dehydrogenase subunit 6 [Proteromonas lacertae] Length = 197 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 7/196 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++FF LF+ + +IS +VV+V N IYSV LIF+F N L LLLG +F+++I L++Y Sbjct: 1 MSNIFFNLFASLLLISLIMVVSVNNAIYSVLFLIFSFFNVMCLLLLLGVDFISLIFLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +GA+ V FLF+IMM+ + E K + I ++ FMVF E Sbjct: 61 LGAITVLFLFVIMMIQLKTEDFGNFKFIPVFCFVVLFIFFIDIFKNNDVFMVFLNENSNL 120 Query: 123 RL------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QD 175 + +N+ IG++ YT +A ISG ILL++MIGAI+L L+ + +++ Q+ Sbjct: 121 NYMNWFLKIINIDNIRMIGQIAYTYFAVYFIISGIILLIAMIGAILLSLKKNQYVRKWQN 180 Query: 176 ISKQLESNPDNSIVMV 191 S+QL +N+I V Sbjct: 181 TSQQLSRCVENAIFFV 196 >gi|71733150|ref|YP_271954.1| NADH dehydrogenase subunit 6 [Montastraea faveolata] gi|71733164|ref|YP_271941.1| NADH dehydrogenase subunit 6 [Montastraea franksi] gi|71733178|ref|YP_271928.1| NADH dehydrogenase subunit 6 [Montastraea annularis] gi|71043518|dbj|BAE16181.1| NADH dehydrogenase subunit 6 [Montastraea annularis] gi|71043532|dbj|BAE16194.1| NADH dehydrogenase subunit 6 [Montastraea annularis] gi|71043546|dbj|BAE16207.1| NADH dehydrogenase subunit 6 [Montastraea franksi] gi|71043560|dbj|BAE16220.1| NADH dehydrogenase subunit 6 [Montastraea franksi] gi|71043574|dbj|BAE16233.1| NADH dehydrogenase subunit 6 [Montastraea faveolata] gi|71043588|dbj|BAE16246.1| NADH dehydrogenase subunit 6 [Montastraea faveolata] Length = 186 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 8/187 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++L F F I+S +VV+ NP+ S+F L+ FVN+A FL L +F+A++ L+VY Sbjct: 1 MEALIFCFF-LSTIVSGIMVVSALNPVLSIFWLVLVFVNSAVFFLWLEVDFLALMFLLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--CASNFMVF----- 115 VGA+ V FLF++M+L++ R++ +G L AS++ + Sbjct: 60 VGAIAVLFLFVVMLLNLTDYPPVFREEVDMTNYMPVGFLIGGFFFSEIASSWSIIFPRVE 119 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 S + + +N+E +G+VLY ++GF LL++M+G IVL K+QD Sbjct: 120 SWDLSFPWFLVSYHNIEALGQVLYISCFCLFFLAGFALLVAMVGVIVLTQELEPLTKKQD 179 Query: 176 ISKQLES 182 + Q+ Sbjct: 180 LFIQINR 186 >gi|219847957|ref|YP_002462390.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus aggregans DSM 9485] gi|219542216|gb|ACL23954.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus aggregans DSM 9485] Length = 168 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 86/167 (51%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + + +AI+ + +V RN ++S L+ F A LFLLL A F+ I L VY Sbjct: 1 MELILFLITALIAIVGAVAMVVSRNAVHSALFLLLNFAAIAVLFLLLHAPFLFAIQLTVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF++M+L + P + + LA +I + Sbjct: 61 AGAIMVLFLFVVMLLGAEKVEDAPDRIAWQQPLALVLGLALLVIAVVVGLGGATTPPPDG 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + ++G +L+T Y P E++GFILL++++G +VL R R+ Sbjct: 121 EALVPFTDPRSLGGLLFTDYLLPFEVTGFILLIAVVGVVVLSQRGRK 167 >gi|257852682|gb|ACV71353.1| NADH dehydrogenase subunit 6 [Rhizanthes lowii] Length = 176 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 9/175 (5%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 F+V +NP++SV I F +GL L LG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GFMVARAKNPVHSVLFSILVFRETSGLLLFLGLDFSAMIFPVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL--------VFKGN 129 I I R S IG IL E+ + + + + L + Sbjct: 61 IQIAEIHEEVLRYLPFSGLIGLILWWEMFFILDTIPLIKQKRKTTYLGYKVYAGKIISWT 120 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + +LL++MIGAIVL + RQD+ ++ + Sbjct: 121 NLETLGNLLYTYYFVWFLVPSILLLVAMIGAIVLTMHRTTHGVRQDLFRRNAIDF 175 >gi|116624762|ref|YP_826918.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus Solibacter usitatus Ellin6076] gi|116227924|gb|ABJ86633.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Solibacter usitatus Ellin6076] Length = 169 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 1/168 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ FY+F+ M + L +T R+ ++S SLI + + AGL+LL AEF+ + +V Sbjct: 1 MLTDTILFYIFAVMVLAGGILTITRRSAVHSAISLIVSLLGVAGLYLLQQAEFLFAVQIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG 119 +YVG ++V FLF+IM++++D E + R + + + ++ A++ Sbjct: 61 LYVGGIMVLFLFVIMLVNLDQAAKERQFNRQWSIALIAVALVGAQVGYFLYKGKGSFRIA 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 E+ +NVE + L+T+Y P EI+ +LL++++G++V+ + Sbjct: 121 EVIAPAAVTHNVEQVADSLFTEYLLPFEIASILLLVAVVGSVVMAKKR 168 >gi|94985025|ref|YP_604389.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Deinococcus geothermalis DSM 11300] gi|94555306|gb|ABF45220.1| NADH dehydrogenase subunit J [Deinococcus geothermalis DSM 11300] Length = 197 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 1/162 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +A++ + + V RN +++ L+ ++ AGLF L A F+A ++VY GA Sbjct: 2 IAFIFLGALALVGAVITVAARNAVHAALGLVGTLLSVAGLFASLNAAFLAATQVIVYAGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SRL 124 ++V FLF+IM+L+ + ++ IG + F Sbjct: 62 IMVLFLFVIMLLNANQPISGRDPVPFVRELAGIGGVLLAGAFAVLAFTYRDPRPLAEGAA 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +G N +G+VL T++ P E +LL++++GAI L+ R Sbjct: 122 ALQGGNAAPVGEVLLTRFLLPFEAVSILLLVAIVGAIALVQR 163 >gi|297181765|gb|ADI17946.1| NADH:ubiquinone oxidoreductase subunit 6 (chain j) [uncultured Desulfobacterales bacterium HF0200_07G10] Length = 169 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 92/167 (55%), Gaps = 2/167 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L FY + + ++ + VV +P+ S SLI + AG+F+L A F+A++ +++Y Sbjct: 1 MELLIFYPLAGLCVLLALGVVFNNSPVGSAISLIGMMLGLAGIFILQQAHFIAILQIIIY 60 Query: 63 VGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA++V F+F+IM+L++ + +++ L S G+LA ++ S+ + Sbjct: 61 AGAIMVLFMFVIMLLNLKKGDDTGWTAREKNLLLSILTGLLAIGILYKISDIIFSGKMAT 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + L V NIGK L+T Y P E++ +LL +M+GA+VL Sbjct: 121 PAILPDSFGTVANIGKTLFTDYVLPFEVASILLLAAMVGAVVLAKTK 167 >gi|46202538|ref|ZP_00208558.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Magnetospirillum magnetotacticum MS-1] Length = 159 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 96/160 (60%), Gaps = 6/160 (3%) Query: 45 LFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104 +FLLLGAEF+AM+ ++VYVGAV V FLF++MMLDI++ + + I ++ Sbjct: 1 MFLLLGAEFLAMVLVIVYVGAVAVLFLFVVMMLDINMVELKEGFLQYLPTGALIAVVLLV 60 Query: 105 LIVCASNFMVFSAEGE-----LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 ++ F+ + E + + + +N +GK++YT Y Y + SG +LL++MIG Sbjct: 61 ELLAMFGGWAFAPDVEAMIKAPTPTLDQASNTVALGKLIYTNYVYLFQASGLVLLVAMIG 120 Query: 160 AIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 I+L R R +++Q I+ Q+ + +S+ + KV+SG+GI Sbjct: 121 TILLTHRKRTGVRKQIIADQVGRSR-DSVELKKVQSGRGI 159 >gi|197259884|ref|YP_002149679.1| NADH dehydrogenase subunit 6 [Madracis mirabilis] gi|169809232|gb|ACA84070.1| NADH dehydrogenase subunit 6 [Madracis mirabilis] Length = 187 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 8/186 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 F + F I S +VV+ NP+ S+F L+ F+N+A FLLLG +F+A++ L++YVG Sbjct: 2 EFFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--------VCASNFMVFS 116 A+ + FLF+IM+L++ +++ IG + + +F V + Sbjct: 62 AIAILFLFVIMLLNLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLLLGSFQVEN 121 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +N+E +G VLY ++ FILL++MIG IVL K+QD+ Sbjct: 122 WDLSFPWFLISYHNIEALGHVLYVSCFCLFLLASFILLVAMIGVIVLTQETEPLSKKQDL 181 Query: 177 SKQLES 182 Q+ Sbjct: 182 FFQINR 187 >gi|313768549|ref|YP_004062223.1| NADH dehydrogenase subunit 6 [Plocamiocolax pulvinata] gi|312844676|gb|ADR03239.1| NADH dehydrogenase subunit 6 [Plocamiocolax pulvinata] Length = 200 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 71/196 (36%), Positives = 112/196 (57%), Gaps = 5/196 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++FS +IS+ +V+ N ++SV LI F N A L L LGAEF++ + ++ Sbjct: 1 MNTEISITFIFSSFVLISALMVIYSSNAVHSVLFLILVFFNMAILLLFLGAEFISFLLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG 119 VYVGA+ V FLF++MML+ I +K + LG I++++ S +V + Sbjct: 61 VYVGAIAVLFLFVVMMLNTKISSKNMDQKSIWPLGIIIFFIISSQFYNINSQNLVLVFDN 120 Query: 120 ELSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + L F NN++ IGK+ YT Y++ +S F+LL++MIGAI L L H+ +IK+Q Sbjct: 121 NILVLWFNESFFFNNIQVIGKLFYTYYSFLFFLSSFLLLIAMIGAITLTLHHKTNIKKQQ 180 Query: 176 ISKQLESNPDNSIVMV 191 I+ QL N SI + Sbjct: 181 INTQLIRNYKGSIKFI 196 >gi|193782685|ref|NP_436087.2| NuoJ2 NADH:quinone oxidoreductase subunit 6 (chain J) [Sinorhizobium meliloti 1021] gi|307304387|ref|ZP_07584138.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti BL225C] gi|10945071|emb|CAC14146.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] gi|193073141|gb|AAK65499.2| NuoJ2 NADH:quinone oxidoreductase subunit 6 (chain J) [Sinorhizobium meliloti 1021] gi|306902589|gb|EFN33183.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti BL225C] Length = 166 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 94/165 (56%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ ++++++ +V RNP++S +L+ F+ + +F++LGA +A+I + VY Sbjct: 1 MHQGFFLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ V + G L + + +L +V + E Sbjct: 61 VGAIMVLFLFVIMMVDVREAVLQRFMPGGNLPALALLVLLGAEMVVLVLWSDRFIE-SPP 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 G+ + ++ K L++ Y P E++ ILL +++GAIVL + Sbjct: 120 VAERGGDAIRDLSKTLFSDYLLPFEVASVILLAALVGAIVLARKE 164 >gi|327191015|gb|EGE58069.1| putative NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli CNPAF512] Length = 166 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ +++I++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFAAVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ V + G L + + +L ++ + + E Sbjct: 61 VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLPALVLVVLLGVEMLVLVLWSDRFSVIE-P 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + G+ + + L+ Y P E + ILL +++GAIVL + Sbjct: 120 VAMRGGDQIRQLSTTLFADYLLPFEAASVILLAALVGAIVLARKE 164 >gi|154508647|ref|ZP_02044289.1| hypothetical protein ACTODO_01148 [Actinomyces odontolyticus ATCC 17982] gi|153798281|gb|EDN80701.1| hypothetical protein ACTODO_01148 [Actinomyces odontolyticus ATCC 17982] Length = 325 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 1/168 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + + + + V+ + +SV ++ + A L++ A F+ + +VV Sbjct: 13 TGEIILFACTAILMVACALGVLFFKKAAHSVICMVGVMLGLAVLYIANSAPFLGVAQIVV 72 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF+IM++ I R+ RG + + +G L +IV + A + Sbjct: 73 YTGAIMMLFLFVIMLIGIGTSDDYARQSRGAIVAAVLGGLGLIVIVTTAILKAVPAPHKP 132 Query: 122 SRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + N + ++ L+ ++ +E++G +L+ + +GA++L R Sbjct: 133 VEVDPYSNQPITDLAITLFQEHWLSMELAGGLLITAAVGAMLLTHSDR 180 >gi|293191759|ref|ZP_06609283.1| NADH dehydrogenase I, J subunit [Actinomyces odontolyticus F0309] gi|292820452|gb|EFF79435.1| NADH dehydrogenase I, J subunit [Actinomyces odontolyticus F0309] Length = 325 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 1/168 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + + + + V+ + +SV ++ + A L++ A F+ + +VV Sbjct: 13 TGEIILFACTAILMVACALGVLFFKKAAHSVICMVGVMLGLAVLYIANSAPFLGVAQIVV 72 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF+IM++ I R+ RG + + +G L +IV + A + Sbjct: 73 YTGAIMMLFLFVIMLIGIGTSDDYARQSRGAIVAAVLGGLGLIVIVTTAILKAVPAPHKP 132 Query: 122 SRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + N + ++ L+ ++ +E++G +L+ + +GA++L R Sbjct: 133 VEVDPYSNQPITDLAITLFQEHWLSMELAGGLLITAAVGAMLLTHSDR 180 >gi|229082509|ref|ZP_04214972.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock4-2] gi|228700941|gb|EEL53464.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock4-2] Length = 162 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAIVL + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLAKKDEKE 157 >gi|164421209|ref|YP_001648662.1| NADH dehydrogenase subunit 6 [Igernella notabilis] gi|158939021|gb|ABW83942.1| NADH dehydrogenase subunit 6 [Igernella notabilis] Length = 175 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 4/176 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 Y F +AII +V+ N ++SV LI AF++ G+F L +++A I +++YVGA+ Sbjct: 3 ILYFFILLAIICGLMVILTTNAVHSVIWLIGAFLSVTGIFFWLKXDYLAFILIIIYVGAI 62 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 V FLF+IMML+++ E K + FI +I+ S F+ G + Sbjct: 63 SVLFLFVIMMLNLNNLTNEMNKVKTLGPGLFISAFLFLIILGQSAFVG----GFRWDPIT 118 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 +N++ IG LY+ Y + + +ILL++MIG IVL K+Q++ Q+ Sbjct: 119 CLSNIQLIGIELYSGCYYLIILVSYILLVAMIGVIVLARELNSGAKKQNMYIQINR 174 >gi|229072761|ref|ZP_04205961.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus F65185] gi|229193545|ref|ZP_04320490.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC 10876] gi|228589934|gb|EEK47808.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC 10876] gi|228710387|gb|EEL62361.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus F65185] Length = 162 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAIVL + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLAKKDEKE 157 >gi|206577065|ref|YP_002237332.1| NADH-quinone oxidoreductase, J subunit [Klebsiella pneumoniae 342] gi|288934262|ref|YP_003438321.1| NADH dehydrogenase (quinone) [Klebsiella variicola At-22] gi|290508465|ref|ZP_06547836.1| NADH dehydrogenase I subunit J [Klebsiella sp. 1_1_55] gi|206566123|gb|ACI07899.1| NADH-quinone oxidoreductase, J subunit [Klebsiella pneumoniae 342] gi|288888991|gb|ADC57309.1| NADH dehydrogenase (quinone) [Klebsiella variicola At-22] gi|289777859|gb|EFD85856.1| NADH dehydrogenase I subunit J [Klebsiella sp. 1_1_55] Length = 184 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 83/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ VVT NP++++ LI + + AG+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVVTHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E +K G + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERKWLQPGIWIGPAILSAVLLVVIVYAILGINDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 N + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGAAINAKEVGIALFGPYVLAVELASMLLLAGLVVAFHIGREER 163 >gi|218439483|ref|YP_002377812.1| NADH dehydrogenase subunit J [Cyanothece sp. PCC 7424] gi|218172211|gb|ACK70944.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cyanothece sp. PCC 7424] Length = 204 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 101/196 (51%), Gaps = 4/196 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F + + + + ++ VV + N +YS F L F++ AG+++LL A+FVA +++Y Sbjct: 7 VQIVSFGILAALVLAAALGVVLLSNIVYSAFLLGGVFLSIAGIYILLNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG-EL 121 VGAV V LF IM+++ + R ++ G++ L ++ + Sbjct: 67 VGAVNVLILFAIMLVNKQEDFK--VLPRRWIRKIATGVVCFGLFALLGTMILITPWSLNS 124 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH-RRDIKRQDISKQL 180 + N + IGK ++ + P E++ +LL++M+GAI++ R +++ + + Sbjct: 125 TSPAVVENTLVEIGKHFFSDFLLPFELASVLLLMAMVGAIIIARRDFIPEMQPSEPTATA 184 Query: 181 ESNPDNSIVMVKVKSG 196 + P+ ++ ++SG Sbjct: 185 LTLPERPRELISLESG 200 >gi|163784656|ref|ZP_02179484.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] gi|159880074|gb|EDP73750.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] Length = 174 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 93/170 (54%), Gaps = 2/170 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++FS +A++S+ + RN +Y+V SLI + +GLF +GAE V I L+ Sbjct: 1 MELTQIAFWIFSSLAVLSAIGTIFFRNMVYTVLSLISTLIMVSGLFFTMGAELVGAIQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y A++VF++ +I + + + K L ++ EL + S G Sbjct: 61 IYAVAIVVFYVLVISTVP-EFKGKAVDPKYMLLSIPVGFLIFLELAYVSIYGAWKSNTGI 119 Query: 121 LS-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 S ++ K N + +G +L+T+Y +P E++ ILL++MIGAI++ + + Sbjct: 120 FSTEVIDKIGNAKAVGTMLFTKYLFPFEVASLILLVAMIGAIIIGRKEEK 169 >gi|86359319|ref|YP_471211.1| NADH-ubiquinone oxidoreductase chain J protein [Rhizobium etli CFN 42] gi|86283421|gb|ABC92484.1| probable NADH-ubiquinone oxidoreductase chain J protein [Rhizobium etli CFN 42] Length = 166 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 94/165 (56%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ +++I++ VV RNP++S +L+ F+N + +F+LL A F+A+I + VY Sbjct: 1 MDQGFFLLFATVSVITALTVVLARNPVHSALALMACFLNISAIFVLLEAPFLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V F+F+IMM+D+ V + G L + + +L ++ + + E Sbjct: 61 VGAIMVLFVFVIMMIDVREAVLQRFLPGGNLPALVLVVLLGVEMLVLVLWSDRFSVIE-P 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + G+ + + L+ Y P EI+ ILL ++IGAIVL + Sbjct: 120 VAMRGGDQLRQLSTTLFADYLLPFEIASVILLAALIGAIVLARKE 164 >gi|146298997|ref|YP_001193588.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Flavobacterium johnsoniae UW101] gi|146153415|gb|ABQ04269.1| NADH dehydrogenase subunit J [Flavobacterium johnsoniae UW101] Length = 179 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 93/163 (57%), Gaps = 1/163 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + +I++FL + RNPI+S L+ F + AG +LLL ++F+A++ ++VY GA Sbjct: 15 VIFCILALITVITAFLTIFSRNPIHSAIYLVICFFSIAGHYLLLNSQFLAVVHIIVYSGA 74 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +++ FLF IM+++++ + R + LG+ + +++ A G+ Sbjct: 75 IMILFLFTIMLMNLNEQKDVHRPRITRLGA-IVSFCLIVIVLIAIFINSKPIVGDYDSTG 133 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 ++E +GK+L +Y P E + +LL++MIG ++L + + Sbjct: 134 EDFQSIEVLGKILLNEYMVPFEFASILLLVAMIGTVLLSKKEK 176 >gi|195953135|ref|YP_002121425.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobaculum sp. Y04AAS1] gi|195932747|gb|ACG57447.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobaculum sp. Y04AAS1] Length = 173 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 2/169 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FYLF ++II VV+ NPIY V L+ A + +G+F GAE + + L+VY Sbjct: 2 LNQIAFYLFGGISIICGLGVVSASNPIYVVLWLLGALIAISGIFFSAGAELLGALQLMVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120 V A+ VF++ II + + R G FI +L E + + + + Sbjct: 62 VVAIAVFYILIITAVPWRKLHKNEQHNRLIGVTVLPFIALLYVEAFIVGISGVSITKNKI 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + N E IG L++ Y + E+ +LL+SMIGAI+L + + Sbjct: 122 IETITKNYGNAEVIGIKLFSTYFWAFELMSVLLLISMIGAILLGRKEEK 170 >gi|307318094|ref|ZP_07597530.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti AK83] gi|306896135|gb|EFN26885.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sinorhizobium meliloti AK83] Length = 166 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F LF+ ++++++ +V RNP++S +L+ F+ + +F++LGA +A+I + VY Sbjct: 1 MHQGSFLLFATVSVVTALTLVLARNPVHSALALMACFLQISAIFVMLGAPLLAVIQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF+IMM+D+ V + G L + + +L +V + E Sbjct: 61 VGAIMVLFLFVIMMVDVREAVLQRFMPGGNLPALALLVLLGAEMVVLVLWSDRFIE-SPP 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 G+ + ++ K L++ Y P E++ ILL +++GAIVL + Sbjct: 120 VAERGGDAIRDLSKTLFSDYLLPFEVASVILLAALVGAIVLARKE 164 >gi|269469177|gb|EEZ80719.1| NADH dehydrogenase I chain J [uncultured SUP05 cluster bacterium] Length = 203 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 114/201 (56%), Gaps = 10/201 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+FSF + SS ++ RN +V LI +F +AA +++LL AEF+A+ ++ Sbjct: 1 MEFEQILFYVFSFWFVASSLAMIFSRNAAKAVLFLILSFFSAASIWILLEAEFLAITLIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF+I ML+ID + F G +G++ A +I+ ++ SA+ Sbjct: 61 VYVGAVMVLFLFVIKMLNIDKST----LRAKFAGYLPLGLMVAAVIIAEMVLVLGSAQFG 116 Query: 121 LSRLV------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 L + +N+ + LYT Y YP E++ +LL+++I AI L+ R+ + K+Q Sbjct: 117 LDVVAAPVRHGADYSNITVLAMQLYTTYVYPFELAAVLLLIAIIAAITLVHRNEINRKKQ 176 Query: 175 DISKQLESNPDNSIVMVKVKS 195 I +Q+ + + +V + S Sbjct: 177 SIPEQVNVQAKDRVRLVSIAS 197 >gi|152971208|ref|YP_001336317.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895797|ref|YP_002920533.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae NTUH-K2044] gi|262043320|ref|ZP_06016449.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330003564|ref|ZP_08304679.1| NADH-quinone oxidoreductase subunit J [Klebsiella sp. MS 92-3] gi|150956057|gb|ABR78087.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548115|dbj|BAH64466.1| NADH dehydrogenase subunit J [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039344|gb|EEW40486.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536904|gb|EGF63203.1| NADH-quinone oxidoreductase subunit J [Klebsiella sp. MS 92-3] Length = 184 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 83/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ VVT NP++++ LI + + AG+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVVTHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E +K G + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGTEIEQERKWLQPGIWIGPAILSAVLLVVIVYAILGINDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 N + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGAAINAKEVGIALFGPYVLAVELASMLLLAGLVVAFHIGREER 163 >gi|239828577|ref|YP_002951201.1| NADH dehydrogenase subunit J [Geobacillus sp. WCH70] gi|239808870|gb|ACS25935.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. WCH70] Length = 173 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 1/173 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + L F + + +AII L++ + ++ V +L+F F++ AGL++LL AEFVA + ++ Sbjct: 1 MSGEYLAFLVLALVAIIGGVLMLNLTKVVHMVIALVFTFISIAGLYVLLSAEFVAAVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + LF IM+ E E GF F I A A ++ + Sbjct: 61 IYSGAITIIMLFGIMLTRHREEEKEETTTGGFWRKTFTAI-AVSAFGIAVYLGIYQLDFG 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 NN E IG LY+ Y P EI+ ILL++++GAI+L ++ + + Sbjct: 120 EEAANLHENNTEQIGLALYSHYIIPFEITSIILLVALVGAIILAKKNDKGAPK 172 >gi|315605119|ref|ZP_07880171.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon 180 str. F0310] gi|315313226|gb|EFU61291.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon 180 str. F0310] Length = 325 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 88/197 (44%), Gaps = 3/197 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F + + + V+ + ++V ++ + A L++ A F+ + +VV Sbjct: 13 TGEIILFVCTAIAMVACALGVLFCKKAAHAVICMVGVMLGLAILYIANSAPFMGVAQIVV 72 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF+IM++ I R+ RG + +G L LI+ + A Sbjct: 73 YTGAIMMLFLFVIMLIGIGASDDYVRQSRGAIVGSVLGGLGLALIIATAIVKSSHAAHAP 132 Query: 122 SRLVFKGN-NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 S+ + + ++ +L+ ++ +E++G +L+ + +GA++L R K Q Sbjct: 133 SKATPTSDEPITDLAIMLFQEHWLSMELAGALLITAAVGAMLLTHSDRLTAKAD--QAQT 190 Query: 181 ESNPDNSIVMVKVKSGK 197 + + + G+ Sbjct: 191 ARSKMRAFEEKGARIGQ 207 >gi|228911134|ref|ZP_04074940.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis IBL 200] gi|228848497|gb|EEM93345.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis IBL 200] Length = 162 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAIVL + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIVLAKKDEKE 157 >gi|227494512|ref|ZP_03924828.1| NADH dehydrogenase subunit J [Actinomyces coleocanis DSM 15436] gi|226832246|gb|EEH64629.1| NADH dehydrogenase subunit J [Actinomyces coleocanis DSM 15436] Length = 321 Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 89/168 (52%), Gaps = 5/168 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F+ + I + V+ ++ Y+ S++ V A L+LL GA F+ ++ +VVY Sbjct: 17 EAVLFFFVATAMIAGALGVLFLKKAAYAAISMVVVMVGLAVLYLLHGAPFMGIVQIVVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ FLF++MM+ ++ + R ++ LA L+ + ++A GE Sbjct: 77 GAIMMLFLFVLMMIGLNASDEYQSQNRTYITMAVT--LATVLLAGFGITVAYTAMGETQE 134 Query: 124 L---VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 F VE + K L+ Y + +E++G +L++++IGA++L R Sbjct: 135 FKVDAFSDAPVEELAKTLFANYWFSMELAGTLLIVAVIGAVLLTNGDR 182 >gi|228903768|ref|ZP_04067885.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis IBL 4222] gi|228968416|ref|ZP_04129409.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228791275|gb|EEM38884.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228855857|gb|EEN00400.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis IBL 4222] Length = 162 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|311033313|ref|ZP_07711403.1| NADH dehydrogenase subunit J [Bacillus sp. m3-13] Length = 179 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 4/168 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F + AI L++ + ++ V +L+F F++ AG++++L AEFVA + +++Y Sbjct: 6 EFIAFLFLAIAAIAGGVLMLNLTKVVHMVVALVFTFISIAGIYVMLSAEFVAAVQILIYS 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+ + LF IM+ + E R L + AA + + + G Sbjct: 66 GAITIIMLFGIMLTRHNDESETSGLGRKILVGAGVLGFAAVMYFGLYSLDL----GSQES 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 NN E IG +Y +Y P E++ ILL++++GAI+L R D Sbjct: 122 ADLHVNNTEQIGVAIYAKYVIPFELTSVILLVALVGAIILARRDDEDT 169 >gi|118498232|ref|YP_899282.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. novicida U112] gi|194324416|ref|ZP_03058189.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family [Francisella tularensis subsp. novicida FTE] gi|208780259|ref|ZP_03247601.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family [Francisella novicida FTG] gi|254373573|ref|ZP_04989059.1| hypothetical protein FTCG_01670 [Francisella tularensis subsp. novicida GA99-3549] gi|254375040|ref|ZP_04990520.1| hypothetical protein FTDG_01228 [Francisella novicida GA99-3548] gi|118424138|gb|ABK90528.1| NADH dehydrogenase I, J subunit [Francisella novicida U112] gi|151571297|gb|EDN36951.1| hypothetical protein FTCG_01670 [Francisella novicida GA99-3549] gi|151572758|gb|EDN38412.1| hypothetical protein FTDG_01228 [Francisella novicida GA99-3548] gi|194321481|gb|EDX18966.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family [Francisella tularensis subsp. novicida FTE] gi|208743908|gb|EDZ90210.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family [Francisella novicida FTG] gi|332678968|gb|AEE88097.1| NADH-ubiquinone oxidoreductase chain J [Francisella cf. novicida Fx1] Length = 201 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 116/200 (58%), Gaps = 10/200 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ + FY F+ +AIIS+ ++V NP+ SV ++IF F+ A ++++L ++A++ +V Sbjct: 1 MVVTDILFYTFASLAIISALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++ MLD+ +E ++G +G FF + A + + + ++A Sbjct: 61 VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYALAAVVVCAIFATVISYAATNV 114 Query: 121 LSRLVFKG--NNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDI 176 + + +G ++ IG +++ Y E+ FILL +M AI L LR R+ K + Sbjct: 115 FAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTVNP 174 Query: 177 SKQLESNPDNSIVMVKVKSG 196 ++Q++ + + MVK+ S Sbjct: 175 AQQVKVRAKDRLTMVKMPSN 194 >gi|317048931|ref|YP_004116579.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pantoea sp. At-9b] gi|316950548|gb|ADU70023.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pantoea sp. At-9b] Length = 183 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 86/166 (51%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + ++ AG+F +GA F + ++VY G Sbjct: 2 EFAFYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + ++ + + + L++ + + +A + + Sbjct: 62 AIMVLFVFVVMMLNLGKSQQDQEREWLKPSLWIGPGIVSLLLLVVMIYAISTAHDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + R+ Sbjct: 120 DGTVIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREERQG 165 >gi|284034160|ref|YP_003384091.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Kribbella flavida DSM 17836] gi|283813453|gb|ADB35292.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kribbella flavida DSM 17836] Length = 277 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 88/185 (47%), Gaps = 2/185 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 F+L + + ++++ ++ VR ++S L + A + A F+ + ++VY G Sbjct: 6 QFAFWLLAPVMVLAAIAMILVRKAVHSALLLATVMICLAVQYAAQDAPFLFAVQIIVYTG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A+++ FLF++M++ +D + RG + L ++V + + Sbjct: 66 AILMLFLFVLMLVGVDASDSLVETIRGQRLLAGLAFLGFAVLVVFAVGNAVYGDPIGLGQ 125 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR--QDISKQLES 182 N + I ++L+ +Y + E++ +L+ + +GA++L R R K+ +D++++ Sbjct: 126 AQPDGNPKGIAQLLFGKYVFAFEVTSALLITAAMGAMMLAHRERLTRKKTQRDLAEERIR 185 Query: 183 NPDNS 187 ++ Sbjct: 186 KYADT 190 >gi|126021018|ref|NP_904241.2| NADH dehydrogenase subunit 6 [Physcomitrella patens subsp. patens] Length = 197 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 6/172 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F++ I+ S VV + N +YS F L F + L+ L A+FVA +++Y Sbjct: 7 LQEIIFFILEIGVILGSLGVVLLSNIVYSAFFLGLVFFCISLLYFALNADFVAAAQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V +F +M+++ + P G + I + + L+V +S + Sbjct: 67 VGAVNVLIVFAVMLINKPESLKIFPVWTVGDKITLAICLTSFFLLVNIILNTSWSNITVI 126 Query: 122 SRL-----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + NV+ IG +L TQY P E+ +LL+++IGAIV+ R Sbjct: 127 TESKGFLESNFTQNVQRIGSLLLTQYLLPFELLSIVLLVALIGAIVIARREN 178 >gi|228942440|ref|ZP_04104978.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955540|ref|ZP_04117544.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961557|ref|ZP_04123167.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228975373|ref|ZP_04135929.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982009|ref|ZP_04142303.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis Bt407] gi|229050965|ref|ZP_04194515.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH676] gi|229130545|ref|ZP_04259501.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-Cer4] gi|229147834|ref|ZP_04276176.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST24] gi|229153458|ref|ZP_04281636.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1550] gi|228630062|gb|EEK86713.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1550] gi|228635662|gb|EEK92150.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST24] gi|228652884|gb|EEL08766.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-Cer4] gi|228722423|gb|EEL73818.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH676] gi|228777770|gb|EEM26043.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis Bt407] gi|228784355|gb|EEM32378.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798175|gb|EEM45178.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804162|gb|EEM50777.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817281|gb|EEM63368.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 162 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|313206206|ref|YP_004045383.1| NADH dehydrogenase subunit j [Riemerella anatipestifer DSM 15868] gi|312445522|gb|ADQ81877.1| NADH dehydrogenase subunit J [Riemerella anatipestifer DSM 15868] gi|315023109|gb|EFT36122.1| NADH-ubiquinone oxidoreductase chain J [Riemerella anatipestifer RA-YM] gi|325336347|gb|ADZ12621.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Riemerella anatipestifer RA-GD] Length = 165 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 94/164 (57%), Gaps = 1/164 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+ S +A+IS+ V +NP+YS+ SL+ F + AGL++LL A+F+ ++ ++VY Sbjct: 1 MEQIVFYIISGLAVISAIYFVAAKNPLYSILSLVITFFSIAGLYILLNAQFLGIVQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FL+++MML++ + + F L V A V E ++ Sbjct: 61 AGAIMVLFLYVLMMLNLKEKDEGKKNNLMKFAGIFSAGLLLVGFVGALRGYV-GNELPVT 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +N+G++L+ +Y P E++ ++L ++GA+++ + Sbjct: 120 EITEGVGLTKNLGRLLFNEYVLPFELASILILSGIVGAVLIGKK 163 >gi|109156519|ref|YP_654384.1| NADH dehydrogenase subunit 6 [Pavona clavus] gi|108744138|gb|ABG02358.1| NADH dehydrogenase subunit 6 [Pavona clavus] Length = 201 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 103/201 (51%), Gaps = 24/201 (11%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY +F + S +V++ NPI+S+F L+ F +A FL LG FVA++ L++YVGA Sbjct: 1 MAFYTLAFGVVGSGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGA 60 Query: 66 VIVFFLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-- 112 + + FLF+IM+L++ + ++ +G+FF +A+ ++ + Sbjct: 61 IAILFLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYAH 120 Query: 113 -------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + + + + + K N+E +G++LY Y ++ ILL++++GAIVL Sbjct: 121 RALFGAEIRRAWDLAIPWFLMKYQNMEALGRILYIACYYLFILASLILLVALVGAIVLTQ 180 Query: 166 RHRRD----IKRQDISKQLES 182 + +KRQDI Q Sbjct: 181 EIGAEAGPMVKRQDIFFQTSR 201 >gi|228924029|ref|ZP_04087305.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835519|gb|EEM80884.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 162 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|227822760|ref|YP_002826732.1| putative NADH-ubiquinone oxidoreductase chain J protein [Sinorhizobium fredii NGR234] gi|227341761|gb|ACP25979.1| putative NADH-ubiquinone oxidoreductase chain J protein [Sinorhizobium fredii NGR234] Length = 166 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 3/167 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FF LF+ +A+I++ +VV RNP++S +L+ F+ + +F+LL A +A++ + VY Sbjct: 1 MDQGFFLLFAAVAVITALIVVLARNPVHSALALMACFLQISAVFVLLEAPLLAVVQIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGA++V FLF+IMM+D+ V + G + +L AE++V + FSA Sbjct: 61 VGAIMVLFLFVIMMIDVREAVLQRFLPGGNLPALVLLVLLGAEMLVLVLSSERFSATEPA 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 ++ G+ + L+ Y P E++ ILL +++GAIVL + Sbjct: 121 AK--GGGDQIREFSTTLFADYLLPFEVASVILLAALVGAIVLARKET 165 >gi|109156406|ref|YP_654397.1| NADH dehydrogenase subunit 6 [Porites porites] gi|108744152|gb|ABG02371.1| NADH dehydrogenase subunit 6 [Porites porites] Length = 197 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 24/197 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + F I S +V++ NPI+S+F L+ F +A FL LG FVA++ L++YVGA+ + Sbjct: 1 MLGFGIIGSGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------ 112 FLF+IM+L++ + ++ +G+FF +A+ ++ ++ Sbjct: 61 FLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLLIGTFFFSEVASSWLIIGGSYTHRAFF 120 Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + + K N+E +G++LY Y ++ F+LL++MIGAIVL Sbjct: 121 GAEISRAWDLATPWFLMKYQNMEALGRILYITCYYLFILASFVLLVAMIGAIVLTQEVGS 180 Query: 170 D----IKRQDISKQLES 182 + +KRQDI Q Sbjct: 181 EVGPLVKRQDIFFQTSR 197 >gi|75294069|sp|Q6YXQ0|NU6C_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|34494824|dbj|BAC85091.1| NADH dehydrogenase ND6 subunit [Physcomitrella patens subsp. patens] Length = 200 Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 6/172 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F++ I+ S VV + N +YS F L F + L+ L A+FVA +++Y Sbjct: 10 LQEIIFFILEIGVILGSLGVVLLSNIVYSAFFLGLVFFCISLLYFALNADFVAAAQILIY 69 Query: 63 VGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGAV V +F +M+++ + P G + I + + L+V +S + Sbjct: 70 VGAVNVLIVFAVMLINKPESLKIFPVWTVGDKITLAICLTSFFLLVNIILNTSWSNITVI 129 Query: 122 SRL-----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + NV+ IG +L TQY P E+ +LL+++IGAIV+ R Sbjct: 130 TESKGFLESNFTQNVQRIGSLLLTQYLLPFELLSIVLLVALIGAIVIARREN 181 >gi|269926640|ref|YP_003323263.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobaculum terrenum ATCC BAA-798] gi|269790300|gb|ACZ42441.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobaculum terrenum ATCC BAA-798] Length = 173 Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 93/171 (54%), Gaps = 5/171 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + S F LF+ + ++ + +VV RNP++ V ++ FVN A +F+LL A+F+A++ ++ Sbjct: 1 MDLVSWLFILFAVIGLLGAVMVVVARNPVHCVLFMLLTFVNIAAMFVLLDAQFIAILQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAE 118 VY GA++V FLF++M+L R + G+ E+IV ++ + Sbjct: 61 VYSGAILVLFLFVVMLLQQAERPIPMLAARVQLPVALVVGGLFLLEIIVVTFGNIITAGR 120 Query: 119 G---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + G NV+ +G+ L+T++ P EI+ +LL++ IGA+ L Sbjct: 121 KGGDTPQAIAQAGGNVQALGEQLFTRWLLPFEIASVLLLVAAIGALYLAKE 171 >gi|229112706|ref|ZP_04242242.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock1-15] gi|228670838|gb|EEL26146.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock1-15] Length = 162 Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSVDFANESTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|299830440|ref|YP_003734811.1| NADH dehydrogenase subunit 6 [Pythium ultimum] gi|299830499|ref|YP_003734870.1| NADH dehydrogenase subunit 6 [Pythium ultimum] gi|269810817|gb|ACZ43846.1| NADH dehydrogenase subunit 6 [Pythium ultimum] gi|269810876|gb|ACZ43905.1| NADH dehydrogenase subunit 6 [Pythium ultimum] gi|269812130|gb|ACZ44428.1| NADH dehydrogenase subunit 6 [Pythium ultimum] gi|269812189|gb|ACZ44487.1| NADH dehydrogenase subunit 6 [Pythium ultimum] Length = 213 Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 64/212 (30%), Positives = 113/212 (53%), Gaps = 18/212 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++FF+ FS +A+ S+ V+ N IYS F LI FVN+ GL L+ EF++++ ++ Sbjct: 1 MNFETIFFFFFSSIALTSAIFVIYSTNTIYSAFFLILVFVNSTGLLLISEIEFISIMLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEV-AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-- 117 +YVGA+ V FLF+IMMLDI++ + G+L F+ L +F+ Sbjct: 61 IYVGAITVLFLFVIMMLDINVLIDKNNNNNFGYLPIIFLISFVFFLETFVMFSKIFTTYY 120 Query: 118 -------------EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 ++ + N+E IG++LY+ YA+ +G ILL+++IGA+ L Sbjct: 121 HLIEQSFFKNDLFYNQVIYQLDNITNIETIGQILYSYYAFFFLAAGIILLIALIGAVTLT 180 Query: 165 LRHRR--DIKRQDISKQLESNPDNSIVMVKVK 194 + ++ + +++ KQL N ++ +K K Sbjct: 181 KKEKKKQNFLTKNLYKQLSRNSLQAVFNIKNK 212 >gi|152993798|ref|YP_001359519.1| NADH dehydrogenase subunit J [Sulfurovum sp. NBC37-1] gi|151425659|dbj|BAF73162.1| NADH-quinone oxidoreductase, chain J [Sulfurovum sp. NBC37-1] Length = 187 Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 92/165 (55%), Gaps = 3/165 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLFS + I + V +N +Y++ SL V +G F +LGA+F+ ++ L+VYV Sbjct: 3 ETIAFYLFSALTIGLFLITVMSKNVLYAMTSLAAGMVLISGFFFILGADFLGVVQLIVYV 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA++ + F +M D ++ E + F +G L+A +V +++ + Sbjct: 63 GAIMALYSFAMMFFDATKDIKEKNTNPALI--FVLGGLSALALVLMFAAPIYNESIQALY 120 Query: 124 LVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +G N +++G VL+T+Y P E++ +LL++MI I+L + Sbjct: 121 PMHEGVGNAQDVGIVLFTKYLVPFEVAAVMLLVAMIAGIILAGKK 165 >gi|229181542|ref|ZP_04308868.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus 172560W] gi|228601910|gb|EEK59405.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus 172560W] Length = 162 Score = 120 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F Sbjct: 2 FAIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFG 61 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133 IM+ + E R ++ FF + ++ A N + F+ E L NN Sbjct: 62 IMLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNVDFANESTQGSLPLHENNTLQ 120 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 IG +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 121 IGTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|159899733|ref|YP_001545980.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Herpetosiphon aurantiacus ATCC 23779] gi|159892772|gb|ABX05852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Herpetosiphon aurantiacus ATCC 23779] Length = 174 Score = 120 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 6/168 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ F + +A+ ++ +V N ++S LI F + A L+ LL A F+ + + VY Sbjct: 1 METFLFITTAIVAVGAALAMVLSSNAVHSALFLILNFCSVAILYFLLRAPFLGAVQVTVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IM+L + K + G++ ++ ++ + + Sbjct: 61 AGAIMVLFLFVIMLLGAENAELGEEKIGWQKPA---GLVLGVALLAEIGYVAYRGTTLID 117 Query: 123 RLVFKGNNVEN---IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V N+ I L++ Y P E+ +LL++++G +VL R Sbjct: 118 APVADATNIGAPTTISAKLFSTYLLPFEVISILLLIAVVGTVVLTRRR 165 >gi|332184787|gb|AEE27041.1| NADH-ubiquinone oxidoreductase chain J [Francisella cf. novicida 3523] Length = 201 Score = 120 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 116/200 (58%), Gaps = 10/200 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ ++ FY F+ +AIIS+ ++V NP+ SV ++IF F+ A ++++L ++A++ +V Sbjct: 1 MVVTNILFYTFASLAIISALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++ MLD+ +E ++G +G FF + A + + + ++A Sbjct: 61 VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYALAAVVVCAIFATVISYAATNV 114 Query: 121 LSRLVFKG--NNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDI 176 + + +G ++ IG ++ Y E+ FILL +M AI L LR R+ K + Sbjct: 115 FAGAMMQGGVGGLKIIGLTMFNNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTVNP 174 Query: 177 SKQLESNPDNSIVMVKVKSG 196 ++Q++ + + MVK+ S Sbjct: 175 AQQVKVRAKDRLTMVKMPSN 194 >gi|223937085|ref|ZP_03628993.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium Ellin514] gi|223894366|gb|EEF60819.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium Ellin514] Length = 164 Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 3/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY+F+ + +I V+ RNPI S L+ + + AGLF+LL A F+ + ++VY Sbjct: 1 MPEYLFYIFAALTLICGAFVIINRNPINSAMCLVLSIGSMAGLFVLLNAFFLGAVQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+V FLF+IM+LD+ AE R++ G+ A + + S + + Sbjct: 61 AGAVMVLFLFVIMLLDLK---AEERRRVNLFGAVTGVTSVAAIAFIFYKALAASKDQLPN 117 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +G L++ Y P EI +LL++M+G I+L + Sbjct: 118 VTDRAVGGTVELGTKLFSDYLLPFEILSILLLVAMVGVILLSKK 161 >gi|225850950|ref|YP_002731184.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit j) (ndh-1 subunit j) [Persephonella marina EX-H1] gi|225645392|gb|ACO03578.1| NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit j) (ndh-1 subunit j) [Persephonella marina EX-H1] Length = 176 Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 4/168 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + ++ FY FS +AI+S+ VV +N IY+V SLI + +GLF +GAE + + ++ Sbjct: 1 MELNTVAFYTFSTLAILSAVGVVFFKNIIYAVLSLISTLIMVSGLFFTMGAELIGGLQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y A++VF++ +I + + L S +G L + S + + A Sbjct: 61 IYAVAIVVFYVLVISTVP--EFKGRSVDPKYMLTSIPVGFLIFIELAYVSLYGAWEANKG 118 Query: 121 L--SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +V + NV+ + +L+T+Y +P E++ ILL++MIGAI++ + Sbjct: 119 IFTPEVVNEVGNVKAVATMLFTKYLFPFEVASLILLVAMIGAILIGRK 166 >gi|223931106|ref|YP_002586968.1| NADH-plastoquinone oxidoreductase subunit 6 [Syntrichia ruralis] gi|219562320|gb|ACL27651.1| NADH-plastoquinone oxidoreductase subunit 6 [Syntrichia ruralis] Length = 193 Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 10/174 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F+L I+ S VV + N +YS F L F + L+ L A+FVA +++Y Sbjct: 8 LHEIIFFLLEVGIILGSLGVVLLTNIVYSAFFLGLVFFCISILYFALNADFVAAAQILIY 67 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V +F +M+++ ++ +G ++ L ++ ++ ++ Sbjct: 68 VGAVNVLIVFAVMLIN--KPQSKKLFSFWTIGDKITFLVCLSLFFLLVTIILNTSWSSIT 125 Query: 123 RLVFK--------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + NV+ IG +L TQ+ P E+ +LL+++IGAIV+ R Sbjct: 126 LITESKKFLNFDFTQNVQRIGYLLLTQFLLPFELLSIVLLVALIGAIVIARREN 179 >gi|290489842|gb|ADD31328.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Antirrhinum majus] Length = 178 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 8/172 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ S VV NPIYS FSL + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLILGSLGVVLFPNPIYSAFSLGLVLFCISLFYILSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M ++ + +G I+ L + + ++ + Sbjct: 67 VGAINVLIIFAVMFMNGSEYYDYEDFQPWTVGDGVTSIVCTSLFISLLTTIPDTSWYGIV 126 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 127 WTTKSNQILEQDLISNSQQIGIHLATDFFLPFELISIILLVALIGAISIARQ 178 >gi|301061344|ref|ZP_07202126.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2] gi|300444663|gb|EFK08646.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2] Length = 299 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 7/169 (4%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 ++S+ L V+ R +++V LI +F A LF LLGA F+A + +++Y GAV+V FLFII Sbjct: 136 LVVSTGLAVSQRKLVHAVVFLIISFFATALLFYLLGAPFLAALEVIIYAGAVMVMFLFII 195 Query: 75 MMLDIDIEVAE--PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 M L ++ E E + F GI L+ A +L+ Sbjct: 196 MTLKLEKEEPESGTSLRPWFPAILLGGISLVLLVTLLWMGQDHGALLKLAMAAP-----R 250 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 +GK L+ ++ + +E+ F+L +++ GA+ L H++ K D ++ Sbjct: 251 EVGKYLFREFWFSVEVVSFLLFVALAGALYLAKEHKKPTKTADSQQEAS 299 >gi|20065788|ref|NP_612820.1|ND6_16049 NADH dehydrogenase subunit 6 [Acropora tenuis] gi|5817779|gb|AAD52916.1|AF152244_3 NADH dehydrogenase subunit 6 [Acropora tenuis] gi|19908468|gb|AAM02911.1|AF338425_5 NADH dehydrogenase subunit 6 [Acropora tenuis] Length = 197 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 24/197 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F + S +V++ NPI+S+F LI F+ +A FL LG FVA++ L++YVGA+ + Sbjct: 1 MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------ 112 FLF+IM+L++ + ++ +G+FF +A+ ++ + Sbjct: 61 FLFVIMLLNLTDFPPAFRLGGEADMTNYIPIGLVIGTFFFSEVASSWLIIGGPYTPQGFL 120 Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + + + K N+E +G++LY Y ++ FILL++M+GAIVL Sbjct: 121 GAEIGGAWDLAIPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLTQEIGS 180 Query: 170 D----IKRQDISKQLES 182 + +KRQDI Q Sbjct: 181 EVGPVVKRQDIFFQTSR 197 >gi|289548977|ref|YP_003473965.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis albus DSM 14484] gi|289182594|gb|ADC89838.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis albus DSM 14484] Length = 163 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 95/165 (57%), Gaps = 3/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + S I+S V+ ++NP++ V S + + AG+FL LGAE +A + L++Y Sbjct: 1 MEWVIFGILSLWLILSVLGVLFLKNPVHVVLSFLSVVLATAGIFLHLGAELLAGLQLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 A++VF++ ++ + + R + +L F + + L+V A +++ +S Sbjct: 61 AVAIVVFYVLVVTTIPWE---KVKRFEGIYLREFLLAVPFFLLLVVALSYLAWSGSFATK 117 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 G+NV ++GKVL+T Y +P E++ ILL++M+GAI+L + Sbjct: 118 GFPLSGDNVRDVGKVLFTSYLFPFELASVILLIAMVGAILLGRKE 162 >gi|229014462|ref|ZP_04171580.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides DSM 2048] gi|229020512|ref|ZP_04177259.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1273] gi|229026729|ref|ZP_04183066.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1272] gi|229063944|ref|ZP_04200243.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH603] gi|229136109|ref|ZP_04264863.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST196] gi|229170001|ref|ZP_04297694.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH621] gi|228613519|gb|EEK70651.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH621] gi|228647354|gb|EEL03435.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST196] gi|228716350|gb|EEL68060.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH603] gi|228734577|gb|EEL85234.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1272] gi|228740783|gb|EEL91034.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1273] gi|228746812|gb|EEL96697.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides DSM 2048] Length = 162 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 84/152 (55%), Gaps = 1/152 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + FS + L NN I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNQSTQGSLPLHENNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 G +LY++Y P E++ ILL++++GAI+L + Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKK 153 >gi|172072939|ref|YP_001806700.1| NADH dehydrogenase subunit 6 [Cryptomeria japonica] gi|221272319|sp|B1VKI7|NU6C_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|171854958|dbj|BAG16698.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica] gi|239794326|dbj|BAH73323.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica] gi|239794409|dbj|BAH73405.1| NADH-plastoquinone oxidoreductase subunit 6 [Cryptomeria japonica] Length = 180 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I VV + N IYS SL + + +++L A+FVA+ +++Y+GAV + LF +M Sbjct: 20 IFGGIGVVLLTNIIYSALSLGLVLICISFFYIILNADFVAVAQILIYIGAVNILILFAVM 79 Query: 76 MLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-GELSRLVFK---GN 129 +++ A P + S L LI N F + S + + N Sbjct: 80 LMNNPKYPNYAPPWTVGDSISSIVCTSLFCSLITIILNISWFGISLTQKSDQMLERDLTN 139 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 N++ IG L T + P E+ ILL+++IGAI + R Sbjct: 140 NIQRIGAHLSTDFFLPFELISIILLVALIGAITIARREET 179 >gi|330470208|ref|YP_004407951.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Verrucosispora maris AB-18-032] gi|328813179|gb|AEB47351.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Verrucosispora maris AB-18-032] Length = 204 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 8/173 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +A+ S LVV+ R+ + + L+ AG++L+L AE VA + ++ Sbjct: 1 MTGVDVLLLALGAVAVGSGVLVVSTRHLVRAGLYLVVCLGAVAGMYLVLTAELVAWVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGAV+V LF +M+ I ++ + G+ + G + L + ++ Sbjct: 61 IYVGAVVVLLLFAVMLTRAPIGASDDLDRPGWPAALIGGGVGLGLAALLIDAFRWTTV-- 118 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + E IG+ ++ + P E+ +LL +++GAIVL R DI R Sbjct: 119 ---ELPEAGTAERIGEQVFASWVLPFEVLSILLLSALVGAIVL---SRPDIGR 165 >gi|56791568|gb|AAW30322.1| NADH dehydrogenase subunit 6 [Asarum sp. Qiu 96018] Length = 166 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++S +VV +NP++SV I F + +GL LLLG +F AMI+ VV++GA+ Sbjct: 1 VLSSPALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAAS 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL---- 124 FLF++MM +I I R S IG IL E+ N + + Sbjct: 61 FLFVVMMFNIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTTSLRY 120 Query: 125 ------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 V N E +G +LYT Y + ILL++MIGAIVL Sbjct: 121 KVHAGKVRSWTNFETLGNLLYTYYVVWFLVPSPILLVAMIGAIVLT 166 >gi|56707220|ref|YP_169116.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89257081|ref|YP_514443.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica LVS] gi|110669690|ref|YP_666247.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis FSC198] gi|115315438|ref|YP_764161.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica OSU18] gi|134301255|ref|YP_001121223.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|156503295|ref|YP_001429360.1| NADH dehydrogenase I, subunit J [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009473|ref|ZP_02274404.1| NADH dehydrogenase i, j subunit [Francisella tularensis subsp. holarctica FSC200] gi|187930997|ref|YP_001890981.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|224456281|ref|ZP_03664754.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254368317|ref|ZP_04984335.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica 257] gi|254368974|ref|ZP_04984987.1| hypothetical protein FTAG_00804 [Francisella tularensis subsp. holarctica FSC022] gi|254371436|ref|ZP_04987437.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis FSC033] gi|254874058|ref|ZP_05246768.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis MA00-2987] gi|290952998|ref|ZP_06557619.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica URFT1] gi|295313818|ref|ZP_06804391.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica URFT1] gi|56603712|emb|CAG44673.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89144912|emb|CAJ80260.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica LVS] gi|110320023|emb|CAL08056.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. tularensis FSC198] gi|115130337|gb|ABI83524.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|134049032|gb|ABO46103.1| NADH dehydrogenase I subunit J [Francisella tularensis subsp. tularensis WY96-3418] gi|134254125|gb|EBA53219.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. holarctica 257] gi|151569675|gb|EDN35329.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis FSC033] gi|156253898|gb|ABU62404.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121895|gb|EDO66065.1| hypothetical protein FTAG_00804 [Francisella tularensis subsp. holarctica FSC022] gi|187711906|gb|ACD30203.1| NADH dehydrogenase I, J subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254840057|gb|EET18493.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158328|gb|ADA77719.1| NADH dehydrogenase i, j subunit [Francisella tularensis subsp. tularensis NE061598] Length = 201 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 115/200 (57%), Gaps = 10/200 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ + FY F+ +AII + ++V NP+ SV ++IF F+ A ++++L ++A++ +V Sbjct: 1 MVVTDILFYTFASLAIIFALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++ MLD+ +E ++G +G FF + A + + + ++A Sbjct: 61 VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYALAAVVVCAIFATVISYAATNV 114 Query: 121 LSRLVFKG--NNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDI 176 + + +G ++ IG +++ Y E+ FILL +M AI L LR R+ K D Sbjct: 115 FAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTVDP 174 Query: 177 SKQLESNPDNSIVMVKVKSG 196 ++Q++ + + MVK+ S Sbjct: 175 AQQVKVRAKDRLTMVKMPSN 194 >gi|226355368|ref|YP_002785108.1| NADH dehydrogenase (quinone) subunit J [Deinococcus deserti VCD115] gi|226317358|gb|ACO45354.1| putative NADH dehydrogenase (quinone), subunit J (NADH-quinone oxidoreductase, subunit J) [Deinococcus deserti VCD115] Length = 199 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 3/163 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F L +A++ + + RN +++ L+ + AGLF + A F+A I ++VY GA Sbjct: 3 LAFILLGALALVGGVITIAARNAVHASLGLVGTLLCVAGLFATMNASFLAAIQVIVYAGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGF--LGSFFIGILAAELIVCASNFMVFSAEGELSR 123 ++V FLF+IMML+ + V L S +LA +V A + E + Sbjct: 63 IMVLFLFVIMMLNANAPVTGRDPVPFVRELASIGGVLLAGAFVVLAFTYRDPRPLAEGAE 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + G +G+ L T++ P E +LL++++GA+ L+ R Sbjct: 123 ALRGGG-AGPVGETLLTRFLLPFEAVSILLLVAIVGAVALVQR 164 >gi|229105886|ref|ZP_04236512.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-28] gi|229118790|ref|ZP_04248140.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock1-3] gi|228664660|gb|EEL20152.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock1-3] gi|228677545|gb|EEL31796.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-28] Length = 162 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + FS E L N I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|229164239|ref|ZP_04292173.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus R309803] gi|228619261|gb|EEK76153.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus R309803] Length = 163 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 82/156 (52%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ F + A + ++ + L NN I Sbjct: 63 MLTKHNAENESRLTLRKWIIFFAVVAFGAVMYFAVNSIDFSTQSTTQGSLPLHENNTLQI 122 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 123 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 158 >gi|288817726|ref|YP_003432073.1| NADH dehydrogenase chain J [Hydrogenobacter thermophilus TK-6] gi|288787125|dbj|BAI68872.1| NADH dehydrogenase chain J [Hydrogenobacter thermophilus TK-6] gi|308751325|gb|ADO44808.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobacter thermophilus TK-6] Length = 177 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 97/167 (58%), Gaps = 2/167 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + F LFS +A++SS VV + NP+Y + SL+ + + AG+F + GAE V + L++Y Sbjct: 2 IQWITFLLFSLLAVVSSLGVVLLPNPVYVILSLLSSLIAIAGVFFVAGAELVGALQLLIY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120 AV VF++F++ + + + + R G L + +L E+++ S + S +G+ Sbjct: 62 AVAVTVFYVFVLTAVPWEKALKKDSHYRVEGVLSFPILLLLYFEILIVFSLGVSASPKGQ 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + L K N E IG +L+++Y + E+ +LL+ MIGA+++ + Sbjct: 122 IKELSKKFGNTEVIGSILFSKYFFAFELVSLVLLIGMIGAVIIGRKE 168 >gi|148244398|ref|YP_001219092.1| NADH dehydrogenase I chain J [Candidatus Vesicomyosocius okutanii HA] gi|146326225|dbj|BAF61368.1| NADH dehydrogenase I chain J [Candidatus Vesicomyosocius okutanii HA] Length = 203 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 107/195 (54%), Gaps = 2/195 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+FSF ++SS ++ RN +V L+ AF +AA +++LL AEF+A+I ++ Sbjct: 1 MGFEQIIFYIFSFWFVVSSLAMIFSRNAAKAVLFLVLAFFSAASIWILLEAEFLAIILIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAE 118 VYVGAV+V FLF+I ML+ID + R + I+ +V SN Sbjct: 61 VYVGAVMVLFLFVIKMLNIDKSTIKARFTGYLPLRLIVAIIIIIEMSLVLGSNQFGLDVF 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 R +N+ + +YT Y YP E++ +LL+++I AI L+ R+ K+Q IS+ Sbjct: 121 SVPERHSEDYSNITVLAMQIYTTYVYPFELAAVLLLIAIIAAITLVHRNDTSRKKQSISE 180 Query: 179 QLESNPDNSIVMVKV 193 Q+ + + +V + Sbjct: 181 QVNVQAKDRVRLVSI 195 >gi|197253931|ref|YP_002149705.1| NADH dehydrogenase subunit 6 [Stylophora pistillata] gi|169809260|gb|ACA84096.1| NADH dehydrogenase subunit 6 [Stylophora pistillata] Length = 187 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 F + F I S +VV+ NP+ S+F L+ F+N+A FLLLG +F+A++ L++YVG Sbjct: 2 EFFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--------VCASNFMVFS 116 A+ + FLF+IM+L++ +++ IG + + +F + + Sbjct: 62 AIAILFLFVIMLLNLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLFLGSFQIEN 121 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +N+E +G++LY ++ FILL++MIG IVL K+QD+ Sbjct: 122 WDLSFPWFLISYHNIEALGQILYVSCFCLFLLASFILLVAMIGVIVLTQETEFLSKKQDL 181 Query: 177 SKQLES 182 Q+ Sbjct: 182 FFQINR 187 >gi|229087782|ref|ZP_04219904.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-44] gi|228695541|gb|EEL48404.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-44] Length = 164 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 1/159 (0%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S AII L++ + ++ + +L+F F++ AGL+ LL AEFV + +++Y GA+ + + Sbjct: 2 SLTAIIGGILMLNLTKVMHMMLALVFTFLSIAGLYFLLSAEFVGVAQILIYSGAITIIMI 61 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 F IM+ D E R L F + ++ A N + F+ + L N Sbjct: 62 FGIMLTKHDAESESSFSFRKLL-IFLAVVAFGGVMYFAVNNIDFTNQNVQGSLPLHEQNT 120 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 IG +LY++Y P E++ ILL++++GAIVL + + Sbjct: 121 LQIGTLLYSKYVIPFELTSVILLVALVGAIVLAKKDEEE 159 >gi|134299886|ref|YP_001113382.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Desulfotomaculum reducens MI-1] gi|134052586|gb|ABO50557.1| NADH dehydrogenase subunit J [Desulfotomaculum reducens MI-1] Length = 172 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 6/169 (3%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L S + + S+ LVVT++N ++SV LI F+ AG+FLLL A+FVAM+ ++VY GA Sbjct: 8 IAFVLLSGLVLGSALLVVTLKNLVHSVLWLIVTFIGVAGIFLLLNADFVAMVQVLVYAGA 67 Query: 66 VIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 V + F +M++ D+E + P R + IG L + ++ LS Sbjct: 68 VCIMIAFGVMLVQRQDMENSNPMNSRYKIAFPLIGGLFISI-----GLLMARTRWTLSGE 122 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 V+ + +L T Y P E++ +L +++ GA+VL+ + + R Sbjct: 123 AVPEKTVQGLAPILLTDYVIPFEVAAVLLTVALTGALVLVKEVKANGDR 171 >gi|157144286|ref|YP_001456707.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis] gi|157149641|ref|YP_001456721.1| NADH dehydrogenase subunit 6 [Pocillopora eydouxi] gi|139471334|gb|ABO77151.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis] gi|139471349|gb|ABO77165.1| NADH dehydrogenase subunit 6 [Pocillopora eydouxi] gi|169809246|gb|ACA84083.1| NADH dehydrogenase subunit 6 [Pocillopora damicornis] Length = 187 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 F + F I S +VV+ NP+ S+F L+ F+N+A FLLLG +F+A++ L++YVG Sbjct: 2 EFFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--------VCASNFMVFS 116 A+ + FLF+IM+L++ +++ IG + + +F + + Sbjct: 62 AIAILFLFVIMLLNLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLLLGSFQIEN 121 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +N+E +G++LY ++ FILL++M+G IVL K+QD+ Sbjct: 122 WDLSFPWFLISYHNIEALGQILYVSCFCLFLLASFILLVAMMGVIVLTQETESLSKKQDL 181 Query: 177 SKQLES 182 Q+ Sbjct: 182 FFQINR 187 >gi|109156477|ref|YP_654410.1| NADH dehydrogenase subunit 6 [Siderastrea radians] gi|108744166|gb|ABG02384.1| NADH dehydrogenase subunit 6 [Siderastrea radians] Length = 197 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 24/197 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F + S +V++ NPI+S+F LI F +A FL LG FVA++ L++YVGA+ + Sbjct: 1 MLAFGVVGSGIMVISALNPIHSIFWLIVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--- 115 FLF+IM+L++ + ++ +G+FF +A+ ++ + Sbjct: 61 FLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYTHRAFF 120 Query: 116 ------SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + K N+E +G++LY Y ++ ILL++MIGAIVL Sbjct: 121 GAEIRKAWDLAAPWFLMKYQNMEALGRILYIACYYLFILASLILLVAMIGAIVLTQEVGS 180 Query: 170 D----IKRQDISKQLES 182 + +KRQDI Q Sbjct: 181 EVGPMVKRQDIFFQTSR 197 >gi|294140407|ref|YP_003556385.1| NADH dehydrogenase I subunit J [Shewanella violacea DSS12] gi|293326876|dbj|BAJ01607.1| NADH dehydrogenase I, J subunit [Shewanella violacea DSS12] Length = 294 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 4/168 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + + +AIIS+ L V+ N ++++ L+ + A +F LLG+ F A + ++VY Sbjct: 1 MIDIIFCITAAVAIISALLTVSAHNVVHALLYLVTMMLAIALIFFLLGSPFAAALQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119 GAV+V F+F+ MML ++ ++ + L+V + + G Sbjct: 61 AGAVMVLFVFVTMMLHQGERSLVAERQLFNPKVAKGPLILSMLLVIELTMISLGSVGLHQ 120 Query: 120 -ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L+ + V+ + L+ Y + ++ +LL +++ AI + + Sbjct: 121 EILTSPLPVEQTVKQLAIQLFGSYRVLVVLAAIMLLTALVSAIHITKQ 168 >gi|284039759|ref|YP_003389689.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma linguale DSM 74] gi|283819052|gb|ADB40890.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Spirosoma linguale DSM 74] Length = 185 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 11/181 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L FY F+ + + + V+ RN +Y+ F L+ AGLF+L GA+F+A+ +++Y Sbjct: 1 MVQLAFYFFAALTLGGALAVLLTRNVLYAAFFLLLTLFGVAGLFVLAGADFLAVAQIMIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----------LGSFFIGILAAELIVCASN 111 VG V+V +F +M+ + ++ G ++A L V Sbjct: 61 VGGVLVLVIFGVMLTHKPEPPTDLNSQQPNRIVSANRFAKGAGWIIPVLVAGALFVALQT 120 Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + S L + N IGK L T+Y P EI+G +LL +++GA L H + Sbjct: 121 LLARSNFALLDQPAGWQNTTTVIGKQLMTEYVVPFEIAGILLLAALVGATYLAASHTKSS 180 Query: 172 K 172 + Sbjct: 181 R 181 >gi|311278763|ref|YP_003940994.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Enterobacter cloacae SCF1] gi|308747958|gb|ADO47710.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Enterobacter cloacae SCF1] Length = 184 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 82/166 (49%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + AG+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPGILSVVLLAVIVYGIIGLNDQGIDG 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G + +G L+ Y +E++ +LL ++ A L R+ Sbjct: 122 NAIG--AKEVGIALFGPYVLAVELASMLLLAGLVVAFHLGREERQG 165 >gi|304398208|ref|ZP_07380082.1| NADH dehydrogenase (quinone) [Pantoea sp. aB] gi|308187596|ref|YP_003931727.1| NADH dehydrogenase I chain J [Pantoea vagans C9-1] gi|304354074|gb|EFM18447.1| NADH dehydrogenase (quinone) [Pantoea sp. aB] gi|308058106|gb|ADO10278.1| NADH dehydrogenase I chain J [Pantoea vagans C9-1] Length = 183 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 87/166 (52%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + ++ AG+F +GA F + ++VY G Sbjct: 2 EFAFYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + ++ + + + L++ + + +A + + Sbjct: 62 AIMVLFVFVVMMLNLGKQTEKQEREWLSPSLWIGPGIVSLLLLVVMIYAILTANDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + R+ Sbjct: 120 DGTIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREERQG 165 >gi|193216256|ref|YP_001997455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroherpeton thalassium ATCC 35110] gi|193089733|gb|ACF15008.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroherpeton thalassium ATCC 35110] Length = 178 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 3/161 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY F+ ++++S VV RN IYS FSL+F F A +++ L A+FVA+ +VVYVG + Sbjct: 9 IFYFFAVLSVVSGMFVVFSRNIIYSAFSLLFTFFGVAAIYVFLSADFVAVTQIVVYVGGI 68 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V LF +M + +V F+ I + ++ M++ A Sbjct: 69 LVLLLFGVMFTNKIYQVQLKTDVLNFIPGLLIMLATMGALLYT---MIYRANWFHGEKEI 125 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 G VE IG + + Y P EI+ +LL+++IGA L Sbjct: 126 SGTVVEQIGVEIMSNYVLPFEIASIVLLVALIGAAFLARAE 166 >gi|145932352|ref|YP_001165400.1| NADH dehydrogenase subunit 6 [Phytophthora sojae] gi|110169595|gb|ABG54061.1| NADH dehydrogenase subunit 6 [Phytophthora sojae] Length = 236 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 39/230 (16%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++FFY FS +A+ S+ V+ N IYS F LI F N+ GL L+ EF++++ ++ Sbjct: 1 MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-----------LGSFFIGILAAELIVCA 109 +YVGA+ V FLF+IMMLD+++ + + + F + I+ +++ Sbjct: 61 IYVGAITVLFLFVIMMLDVNVLIDKNKINNNFGYLPIIFLISFIFFLETFIMFSKVFTSY 120 Query: 110 SNFMVFSAEGELSRLVF----------------------------KGNNVENIGKVLYTQ 141 + + S + +F N+E IG++LY+ Sbjct: 121 YHLINNSFFNQEINTLFFFKDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILYSY 180 Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMV 191 YA+ ++G ILL+++IGA+ L + ++ I +Q+I KQL N +I V Sbjct: 181 YAFFFLVAGIILLIALIGAVTLTKKEKKKIFKQNIYKQLSRNSLKAIFNV 230 >gi|229175967|ref|ZP_04303464.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus MM3] gi|228607561|gb|EEK64886.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus MM3] Length = 162 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTQHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|328953784|ref|YP_004371118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca acetoxidans DSM 11109] gi|328454108|gb|AEB09937.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca acetoxidans DSM 11109] Length = 165 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 7/165 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L + A+IS +VV NP+ S L+ F AG++LL A+F+A + ++VY GA Sbjct: 3 IIFFLLAATALISGIMVVIQVNPVRSALYLVLNFFALAGIYLLANAQFIAAVQIIVYAGA 62 Query: 66 VIVFFLFIIMMLDIDIEV---AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 ++V FLF+IM+L++ A+ + LG+ AA +I + + +G Sbjct: 63 IMVLFLFVIMLLNLRQPEEGGAQLHIGQKILGASLATGTAALVIYTITRLKLPPGKG--- 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + E + K L+T Y P E++ +LL++++GA++L Sbjct: 120 -MAADFGTTEMVAKSLFTDYLLPFEVTSILLLVAVVGAVILAKTK 163 >gi|312172995|emb|CBX81250.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC BAA-2158] Length = 184 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + K G + L + L++ + + S + Sbjct: 62 AIMVLFVFVVMMLNLGGAEVQQEKDWLKPGMWIGPGLLSLLLLVTLVYAILSVNDQGIDG 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +G L+ Y +E++ +LL ++ A + R Sbjct: 122 TMIDG--KQVGISLFGPYLLAVELASMLLLAGLVVAFHIGREQR 163 >gi|62161342|ref|YP_214970.1| NADH dehydrogenase subunit 6 [Montipora cactus] gi|58220707|gb|AAW67970.1| NADH dehydrogenase subunit 6 [Montipora cactus] Length = 197 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 58/197 (29%), Positives = 103/197 (52%), Gaps = 24/197 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F + S +V++ NPI+S+F LI F+ +A FL LG FVA++ L++YVGA+ + Sbjct: 1 MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------ 112 FLF+IM+L++ + ++ +G+FF +A+ ++ + Sbjct: 61 FLFVIMLLNLTDFPPAFRLGGEADMTNYIPIGLVVGTFFFSEVASSWLIIGGPYTPRVFL 120 Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + L + K N+E +G++LY Y ++ FILL++M+GAIVL Sbjct: 121 GAEIGRAWDLALPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLTQEIGS 180 Query: 170 D----IKRQDISKQLES 182 + +KRQDI Q Sbjct: 181 EIGPVVKRQDIFFQTSR 197 >gi|292488835|ref|YP_003531722.1| NADH dehydrogenase I subunit J [Erwinia amylovora CFBP1430] gi|292899986|ref|YP_003539355.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC 49946] gi|291199834|emb|CBJ46958.1| NADH dehydrogenase I chain J [Erwinia amylovora ATCC 49946] gi|291554269|emb|CBA21583.1| NADH dehydrogenase I chain J [Erwinia amylovora CFBP1430] Length = 184 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + K G + L + L++ + + S + Sbjct: 62 AIMVLFVFVVMMLNLGGAEVQQEKDWLKPGMWIGPGLLSLLLLVTLVYAILSVNDQGIDG 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +G L+ Y +E++ +LL ++ A + R Sbjct: 122 TMIDG--KQVGISLFGPYVLAVELASMLLLAGLVVAFHIGREQR 163 >gi|228988518|ref|ZP_04148607.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229142033|ref|ZP_04270558.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST26] gi|229199416|ref|ZP_04326081.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1293] gi|228584130|gb|EEK42283.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus m1293] gi|228641322|gb|EEK97628.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BDRD-ST26] gi|228771234|gb|EEM19711.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 162 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|321268733|gb|ADW79182.1| NADH dehydrogenase subunit 6 [Cyanophora paradoxa] Length = 220 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 23/209 (11%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LFF+LFS AIISSF+ +T + IYSVF LI F NAAGL ++LGAEF+AM+ LVVY+GA Sbjct: 12 LFFFLFSLGAIISSFIAITTNSSIYSVFYLILVFFNAAGLLIMLGAEFLAMLFLVVYLGA 71 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-------------- 111 + + FLF+IMML+I I + + G F + + I N Sbjct: 72 IAILFLFVIMMLNIKINQFKNKIILGAQVFFITLLFSLIYINIPHNSFINLSEILTFNDS 131 Query: 112 ----FMVFSAEGELSRLVFKGNNVENIGK-----VLYTQYAYPLEISGFILLLSMIGAIV 162 + + +L+ L + N+ I ++YTQYAY +S ILL+S+IGAIV Sbjct: 132 EKLILFLNNYSIQLNNLFYNINSFNYITNSHQFFIVYTQYAYYFLLSALILLVSLIGAIV 191 Query: 163 LMLRHRRDIKRQDISKQLESNPDNSIVMV 191 L L + ++K+QD++KQ+ N +I V Sbjct: 192 LTLHKKINVKKQDLNKQINRNFQTTIKTV 220 >gi|229032925|ref|ZP_04188880.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1271] gi|228728470|gb|EEL79491.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus AH1271] Length = 162 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTQHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|228936578|ref|ZP_04099373.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823093|gb|EEM68930.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 162 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYLAVNNIDFANESAQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|109156505|ref|YP_654319.1| NADH dehydrogenase subunit 6 [Agaricia humilis] gi|108744068|gb|ABG02293.1| NADH dehydrogenase subunit 6 [Agaricia humilis] Length = 197 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 24/197 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F + S +V++ NPI+S+F L+ F +A FL LG FVA++ L++YVGA+ + Sbjct: 1 MLAFGVVGSGIMVISALNPIHSIFWLVVVFTGSAVFFLWLGIAFVALMFLIIYVGAIAIL 60 Query: 70 FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------ 112 FLF+IM+L++ + ++ +G+FF +A+ ++ + Sbjct: 61 FLFVIMLLNLTDFPPAFRLGGEADMTNYVPIGLVIGTFFFSEVASSWLIIGGPYAHRALF 120 Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + + + K N+E +G+VLY Y ++ ILL++M+GAIVL Sbjct: 121 GAEIRSAWDLAIPWFLMKYQNMEALGRVLYIACYYLFILASLILLVAMVGAIVLTQEVGS 180 Query: 170 D----IKRQDISKQLES 182 + +KRQDI Q Sbjct: 181 EAGPMVKRQDIFFQTSR 197 >gi|9695394|ref|NP_037616.1| NADH dehydrogenase subunit 6 [Phytophthora infestans] gi|6692646|gb|AAF24789.1|U17009_22 NADH dehydrogenase subunit 6 [Phytophthora infestans] gi|58012152|gb|AAW62560.1| NADH dehydrogenase subunit 6 [Phytophthora infestans] Length = 236 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 39/231 (16%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++FFY FS +A+ S+ V+ N IYS F LI F N+ GL L+ EF++++ ++ Sbjct: 1 MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60 Query: 61 VYVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 +YVGA+ V FLF+IMMLD++ I+ + G+L F+ L VF++ Sbjct: 61 IYVGAITVLFLFVIMMLDVNVLIDKNKINNNFGYLPIIFLISFIFFLETFVMFSKVFTSY 120 Query: 119 GELSRLVF-------------------------------------KGNNVENIGKVLYTQ 141 L F N+E IG++LY+ Sbjct: 121 YHLINNSFFNQEVNTLFFFRDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILYSY 180 Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 YA+ +G ILL+++IGA+ L + ++ +Q+I KQL N +I V Sbjct: 181 YAFFFLAAGIILLIALIGAVTLTKKEKKKNFKQNIYKQLSRNSLKAIFNVN 231 >gi|315587160|gb|ADU41541.1| NADH-ubiquinone oxidoreductase subunit J [Helicobacter pylori 35A] Length = 184 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 4 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 63 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 64 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVAILLTLILSAPSIGENLSKQVN 123 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N+E IG VL+T Y P E + +LL++M+G I Sbjct: 124 SNAIDAQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 165 >gi|167627162|ref|YP_001677662.1| NADH dehydrogenase I subunit J [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667724|ref|ZP_04755302.1| NADH dehydrogenase I, J subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876268|ref|ZP_05248978.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597163|gb|ABZ87161.1| NADH dehydrogenase I, J subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842289|gb|EET20703.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 201 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 114/201 (56%), Gaps = 10/201 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ + FY+F+ +AIIS+ ++V NP+ SV ++IF FV A ++++ ++A++ +V Sbjct: 1 MVVTDILFYIFASLAIISALVLVLANNPVNSVIAMIFTFVFTAAVWIIFQQVYLALLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++ MLD+ +E K+G +G FF A + + + ++A Sbjct: 61 VYVGAVLVMFLFVVFMLDLHVE------KQGRVGRFFYAFAAIIVCAIFATVISYAATKV 114 Query: 121 LSRLVFKG--NNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDI 176 + +G ++ IG ++ Y E+ FILL +M AI L LR R+ K + Sbjct: 115 FAGDSMQGGVGGLKIIGLTMFDNSNLYVFELVDFILLAAMTAAITLTLRSKRKGNKSVNP 174 Query: 177 SKQLESNPDNSIVMVKVKSGK 197 ++Q++ + + MVK+ S + Sbjct: 175 AQQVKVRAKDRLTMVKIPSNR 195 >gi|58201991|gb|AAW67046.1| NADH dehydrogenase subunit 6 [Phytophthora infestans] gi|58202038|gb|AAW67092.1| NADH dehydrogenase subunit 6 [Phytophthora infestans] Length = 236 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 39/231 (16%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++FFY FS +A+ S+ V+ N IYS F LI F N+ GL L+ EF++++ ++ Sbjct: 1 MDFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLILVFTNSTGLLLISEVEFLSIMLII 60 Query: 61 VYVGAVIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 +YVGA+ V FLF+IMMLD++ I+ + G+L F+ L VF++ Sbjct: 61 IYVGAITVLFLFVIMMLDVNVLIDKNKINNNFGYLPIIFLISFIFFLETFVMFSKVFTSY 120 Query: 119 GELSRLVF-------------------------------------KGNNVENIGKVLYTQ 141 L F N+E IG++LY+ Sbjct: 121 YHLINNSFFNQEVNTLFFFRDSMKGTFEIFVDVKPFLKNFINQLDTITNIETIGQILYSY 180 Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 YA+ +G ILL+++IGA+ L + ++ +Q+I KQL N +I V Sbjct: 181 YAFFFLAAGIILLIALIGAVTLTKKEKKKNFKQNIYKQLSRNSLKAIFNVN 231 >gi|228917903|ref|ZP_04081439.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930300|ref|ZP_04093306.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228949014|ref|ZP_04111287.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094403|ref|ZP_04225476.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-42] gi|229124797|ref|ZP_04253976.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus 95/8201] gi|228658672|gb|EEL14333.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus 95/8201] gi|228689004|gb|EEL42830.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-42] gi|228810770|gb|EEM57118.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829359|gb|EEM74990.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841700|gb|EEM86811.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 162 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESAQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|296103961|ref|YP_003614107.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058420|gb|ADF63158.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 184 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 81/164 (49%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDG 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G + +G L+ Y +E++ +LL ++ A + R Sbjct: 122 TPIG--AKEVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|283786348|ref|YP_003366213.1| NADH-quinone oxidoreductase chain J [Citrobacter rodentium ICC168] gi|282949802|emb|CBG89425.1| NADH-quinone oxidoreductase chain J [Citrobacter rodentium ICC168] Length = 184 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 82/166 (49%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAIMLVVIVYAILGVNDQGIDG 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 V + + +G L+ Y +E++ +LL ++ A + R Sbjct: 122 VPI--SAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERPG 165 >gi|259907935|ref|YP_002648291.1| NADH dehydrogenase subunit J [Erwinia pyrifoliae Ep1/96] gi|224963557|emb|CAX55047.1| NADH dehydrogenase I chain J [Erwinia pyrifoliae Ep1/96] gi|283477816|emb|CAY73732.1| NADH dehydrogenase I chain J [Erwinia pyrifoliae DSM 12163] Length = 184 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + K G + L + L++ + + S + Sbjct: 62 AIMVLFVFVVMMLNLGGAEVQQEKDWLKPGMWIGPGLLSLLLLVTIVYAILSVNDQGIDG 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +G L+ Y +E++ +LL ++ A + R Sbjct: 122 TMIDG--KQVGISLFGPYVLAVELASMLLLAGLVVAFHIGREQR 163 >gi|150026253|ref|YP_001297079.1| NADH dehydrogenase I, J subunit [Flavobacterium psychrophilum JIP02/86] gi|149772794|emb|CAL44278.1| NADH dehydrogenase I, J subunit [Flavobacterium psychrophilum JIP02/86] Length = 170 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 93/170 (54%), Gaps = 3/170 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY S + + ++ L + +NPI+S L+ F + AG +LL A+F+A++ ++ Sbjct: 1 MSILLIIFYFLSAITLATALLTIISKNPIHSAIYLVICFFSVAGHYLLFNAQFLAIVHII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEG 119 VY GA++V FLF IM+++++ E + L + G++ ++ M Sbjct: 61 VYSGAIMVLFLFTIMLMNLNEEGEPHKIMATKLAAVVSFGLVCFVMLAVFIKAMPKMETY 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 S F+ +++ +GKVL +Y P E + +LL++M+G ++L + ++ Sbjct: 121 RASGQDFQ--SIKVLGKVLLNEYMVPFEFASILLLVAMMGVVLLSKKEKK 168 >gi|297616448|ref|YP_003701607.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Syntrophothermus lipocalidus DSM 12680] gi|297144285|gb|ADI01042.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Syntrophothermus lipocalidus DSM 12680] Length = 166 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 3/165 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FY+ + + + + VV N + + F L+ +F+ A L+ LLGA+F+ ++ ++ Sbjct: 1 MTWEAVTFYILAVVTVTGAAGVVFSSNIVRAAFFLVASFLGVAALYFLLGADFLGLVQIM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GAV V +F +M++ D R S + G A L+ A V+ Sbjct: 61 IYAGAVSVLVIFAVMLVIKDD---IRRTSLFHPVSRWWGAAIAVLLTTALGKAVWQTSFP 117 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 L + + V + K+L Y E++ +LL++++GAI+L Sbjct: 118 AKGLAVETDRVGQMAKLLLGDYVVAFEVAAVLLLVAIVGAIILAK 162 >gi|62161415|ref|YP_214918.1| NADH dehydrogenase subunit 6 [Anacropora matthai] gi|58220693|gb|AAW67957.1| NADH dehydrogenase subunit 6 [Anacropora matthai] Length = 197 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 24/197 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F + S +V++ NPI+S+F LI F+ +A FL LG FVA++ L++Y+GA+ + Sbjct: 1 MLAFGVVGSGIMVISALNPIHSIFWLIVVFIGSAVFFLWLGISFVALMFLIIYMGAIAIL 60 Query: 70 FLFIIMMLDI-----------DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------ 112 FLF+IM+L++ + ++ +G+FF +A+ ++ + Sbjct: 61 FLFVIMLLNLTDFPPAFRLGGEADMTNYIPIGLVVGTFFFSEVASSWLIIGGPYTPRVFL 120 Query: 113 ---MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + L + K N+E +G++LY Y ++ FILL++M+GAIVL Sbjct: 121 GAEIGRAWDLALPWFLMKYQNMEALGRILYIACYYLFILASFILLVAMVGAIVLTQEIGS 180 Query: 170 D----IKRQDISKQLES 182 + +KRQDI Q Sbjct: 181 EIGPVVKRQDIFFQTSR 197 >gi|89095639|ref|ZP_01168533.1| NADH dehydrogenase subunit J [Bacillus sp. NRRL B-14911] gi|89089385|gb|EAR68492.1| NADH dehydrogenase subunit J [Bacillus sp. NRRL B-14911] Length = 174 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 90/172 (52%), Gaps = 4/172 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + L F + A+ L++ + ++ V +L+F F++ AG+++LL AEF+A++ +++ Sbjct: 4 TGELLAFLGLAIAAVTGGILLINLEKVVHMVVALVFTFISIAGIYILLSAEFIAVVQVLI 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+ + LF IM+ E + + + F + A + +++ + Sbjct: 64 YSGAITIIMLFGIMLTRHHDESGQKAGRLRRILLFLAILAFAFSVYIG----IYNLDFPE 119 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++ NN E IG L++++ P E++ +LL++++GAIVL + + + Sbjct: 120 QEVLLHENNTEQIGISLFSEFVIPFELTSVVLLVALVGAIVLSRKDDEETEE 171 >gi|317011469|gb|ADU85216.1| NADH dehydrogenase subunit J [Helicobacter pylori SouthAfrica7] Length = 182 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQNPKILCILSFGVALLLTLILSAPSISENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 PNAIDAQIPNIKAIGYVLFTDYLIPFEAAALMLLVAMVGGIA 163 >gi|227488699|ref|ZP_03919015.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC 51867] gi|227091360|gb|EEI26672.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC 51867] Length = 282 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + + I + +V + I+S L+ V A + +GA FV ++ +VVY GAV+V Sbjct: 27 WILAAVIIAGAIGMVMCKELIHSALCLLLVMVGVAIEYATMGAPFVFVVQIVVYAGAVMV 86 Query: 69 FFLFIIMMLDIDIEVAEPRK----KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 LFI+MM+ E A+ K + + I LI A N +A +S Sbjct: 87 MILFIVMMVGARGEAADGEKTATGTSHTVLTGVAAIALLALIGIAVNMSTLTAPRGMSEA 146 Query: 125 -VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G NV +G ++ +Y E+ +L+++ +GA++++ R R Sbjct: 147 NAEHGGNVAGLGVEIFNKYVVGFEVLSALLIVAAVGAMIMIFRVR 191 >gi|295400700|ref|ZP_06810677.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus thermoglucosidasius C56-YS93] gi|312112606|ref|YP_003990922.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. Y4.1MC1] gi|294977281|gb|EFG52882.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus thermoglucosidasius C56-YS93] gi|311217707|gb|ADP76311.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacillus sp. Y4.1MC1] Length = 173 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 1/173 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + L F + AII L++ + ++ V +L+F F++ AGL++LL AEFVA + ++ Sbjct: 1 MSGEYLAFLTLALAAIIGGVLMLNLSKVVHMVTALVFTFISIAGLYVLLSAEFVAAVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + LF IM+ E E GF I A A V+ + Sbjct: 61 IYSGAITIIMLFGIMLTRHREEDKENTTTGGFWRKTATAI-AVFAFGAAVYLGVYQLDFG 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 N E IG LY+ Y P EI+ ILL++++GAI+L + R+ ++ Sbjct: 120 EKAERLHEKNTEQIGVALYSHYIIPFEITAVILLVALVGAIILAKKDDREAQK 172 >gi|41203479|ref|NP_957739.1| NADH dehydrogenase subunit 6 [Emiliania huxleyi] gi|33114165|gb|AAP94721.1| NADH dehydrogenase subunit 6 [Emiliania huxleyi] Length = 207 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 17/207 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L FY I S+ +V+ RNP+YSV L+ FVN + L L E++ ++ +VVY Sbjct: 1 MSTLIFYFIGTFCIFSALMVIFSRNPVYSVLFLVLTFVNVSSLLFFLELEYLPLVFIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V F+F++MML+I I + ++ F + + I A+ S + S Sbjct: 61 VGALAVLFIFVMMMLNIRISDLKENNEQLLPVIFILTAIFFFHIFFATKSDFASLKNFFS 120 Query: 123 RLVFKG-----------------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + +N+ N+G +LY+++ Y ++GF+LLL+M+G I+L L Sbjct: 121 TFNNEYSLITADLMLTTNWFSFDSNMRNLGFLLYSEFFYLFILAGFVLLLAMLGTIILTL 180 Query: 166 RHRRDIKRQDISKQLESNPDNSIVMVK 192 R + Q S Q+ N + +I K Sbjct: 181 RRFFKGRIQHPSFQIMRNFETAIKSTK 207 >gi|332674072|gb|AEE70889.1| NADH-ubiquinone oxidoreductase [Helicobacter pylori 83] Length = 184 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 4 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 63 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 64 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVAILLTLILSAPSIGENLSNQVN 123 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 124 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 165 >gi|54114097|gb|AAV29682.1| NT02FT1745 [synthetic construct] Length = 201 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 115/200 (57%), Gaps = 10/200 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+ + FY F+ +AII + ++V NP+ SV ++IF F+ A ++++L ++A++ +V Sbjct: 1 MVVTVILFYTFASLAIIFALVLVLANNPVNSVIAMIFTFIFTAAVWIILQQVYLALLLIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++ MLD+ +E ++G +G FF + A + + + ++A Sbjct: 61 VYVGAVLVMFLFVVFMLDLHVE------EQGRVGRFFYALAAVVVCAIFATVISYAATNV 114 Query: 121 LSRLVFKG--NNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLR-HRRDIKRQDI 176 + + +G ++ IG +++ Y E+ FILL +M AI L LR R+ K D Sbjct: 115 FAGAMMQGGVGGLKIIGLTMFSNANLYVFELVDFILLAAMTAAITLTLRAKRKGNKTVDP 174 Query: 177 SKQLESNPDNSIVMVKVKSG 196 ++Q++ + + MVK+ S Sbjct: 175 AQQVKVRAKDRLTMVKMPSN 194 >gi|108563638|ref|YP_627954.1| NADH dehydrogenase subunit J [Helicobacter pylori HPAG1] gi|107837411|gb|ABF85280.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori HPAG1] Length = 182 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVAILLTLILSAPSIGENLSNQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|237732311|ref|ZP_04562792.1| NADH:ubiquinone oxidoreductase [Citrobacter sp. 30_2] gi|283832290|ref|ZP_06352031.1| NADH-quinone oxidoreductase, J subunit [Citrobacter youngae ATCC 29220] gi|226907850|gb|EEH93768.1| NADH:ubiquinone oxidoreductase [Citrobacter sp. 30_2] gi|291071935|gb|EFE10044.1| NADH-quinone oxidoreductase, J subunit [Citrobacter youngae ATCC 29220] Length = 184 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 82/166 (49%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGISLFGPYVLAVELASMLLLAGLVVAFHVGREERSG 165 >gi|115531585|ref|YP_783947.1| NADH dehydrogenase subunit 6 [Aurelia aurita] gi|110226012|gb|ABG56244.1| NADH dehydrogenase subunit 6 [Aurelia aurita] Length = 190 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F + IIS +VVT +P++S+ L+ +F+ AA +F+ L A+F+A+ TL++YVGA+ + Sbjct: 5 IFMILTIISGIMVVTAIHPVHSIIWLVLSFIGAAIVFIQLQADFIALATLIIYVGAIAIL 64 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 F+F++MML++ + + IL ++ + + L+ + Sbjct: 65 FIFVLMMLNLSSFEFDGNISS-IIPLGITSILGLITLIIGLEYSNINDPEVEEILIKELL 123 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186 +++ IG LY YA L ++ ILL++MIGAI+L L+ KRQD Q+ + N Sbjct: 124 DIQTIGFQLYNSYAPHLIVASLILLVAMIGAIILTLQPHLAAKRQDNFIQITRDFHN 180 >gi|109946836|ref|YP_664064.1| NADH dehydrogenase subunit J [Helicobacter acinonychis str. Sheeba] gi|109714057|emb|CAJ99065.1| NADH dehydrogenase I chain J [Helicobacter acinonychis str. Sheeba] Length = 182 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 89/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVAVLLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + +N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 PNAIDVQISNIKAIGYVLFTDYLIPFEAAALMLLVAMVGGIA 163 >gi|320095558|ref|ZP_08027221.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon 178 str. F0338] gi|319977466|gb|EFW09146.1| NADH-quinone oxidoreductase subunit J [Actinomyces sp. oral taxon 178 str. F0338] Length = 318 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 85/167 (50%), Gaps = 3/167 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + V+ + +S ++ + A L++ A F+ + +VVY Sbjct: 16 EAVLFACTAVFMVACALGVLFFKKAAHSAVCMVGVMLGLAVLYIANNAPFLGVAQIVVYT 75 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ FLF+IM++ I + RG + + +G L + V A+ + +A+ + Sbjct: 76 GAIMMLFLFVIMLIGIGESDDYALQGRGRIIAAVLGGLGLAVCVTAA-VVHSTADARTAA 134 Query: 124 LVFKGNN--VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 V +N + ++ +L+ ++ +E++G +L+ + +GA+VL R Sbjct: 135 PVDPYSNAPITDLAVMLFERHWLSMELAGGLLITAALGAMVLTHSDR 181 >gi|310768157|gb|ADP13107.1| NADH dehydrogenase subunit J [Erwinia sp. Ejp617] Length = 184 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + K G + L + L++ + + S + Sbjct: 62 AIMVLFVFVVMMLNLGGAEVQQEKDWLKPGMWIGPGLLSLLLLVTIVYAILSVNDQGIDG 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +G L+ Y +E++ +LL ++ A + R Sbjct: 122 TMIDG--KQVGISLFGPYVLAVELASMLLLAGLVVAFHIGREQR 163 >gi|229187519|ref|ZP_04314660.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BGSC 6E1] gi|228595958|gb|EEK53637.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus BGSC 6E1] Length = 162 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + E R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTKHNAENESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESAQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E++ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELTSVILLVALVGAIILAKKDEKE 157 >gi|320353967|ref|YP_004195306.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] gi|320122469|gb|ADW18015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] Length = 187 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 1/164 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FF + M I S L +++RN ++SV ++ F + AGL+L L AEF+A + ++VY G Sbjct: 4 QFFFGYCALMIIASGILAISLRNLVHSVLMVLVLFFHMAGLYLTLNAEFLAAVQIIVYAG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRG-FLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 A++V +LF++ ++ + E+ G +LG LA L+ F + Sbjct: 64 AILVLYLFVLFLVSLREELHLDAFVPGAWLGRIIAVGLAVGLLYVIPAFTLGEKGTWSVS 123 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + + + +G+ LY+ Y P EI+G ILL+++IG +VL R Sbjct: 124 AIRELTHTKALGQELYSAYLLPFEIAGLILLVALIGGLVLARRE 167 >gi|300717643|ref|YP_003742446.1| NADH dehydrogenase I chain J [Erwinia billingiae Eb661] gi|299063479|emb|CAX60599.1| NADH dehydrogenase I chain J [Erwinia billingiae Eb661] Length = 184 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 84/166 (50%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY G Sbjct: 2 EFAFYLCGLVAVLTTLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V ++ + + + +++ + + S + + Sbjct: 62 AIMVLFVFVVMMLNLGESVQAQEREWLKPTVWIGPGVLSLVLLGVMIYAIRSVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + R+ Sbjct: 120 DGTMIDAKAVGISLFGPYVLAVELASMLLLAGLVVAYHIGREQRQG 165 >gi|329296026|ref|ZP_08253362.1| NADH:ubiquinone oxidoreductase subunit J [Plautia stali symbiont] Length = 183 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 86/166 (51%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + ++ AG+F +GA F + ++VY G Sbjct: 2 EFAFYLCGLVAVLTTLRVITHTNPVHALLYLIVSLLSIAGVFFSMGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + ++ + + + L++ + + +A + + Sbjct: 62 AIMVLFVFVVMMLNLGKTQQDQEREWLKPSLWIGPGIVSLLLLVVMIYAIMTATDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + R+ Sbjct: 120 DGTVIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDRQG 165 >gi|227542302|ref|ZP_03972351.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC 51866] gi|227181902|gb|EEI62874.1| NADH dehydrogenase subunit J [Corynebacterium glucuronolyticum ATCC 51866] Length = 283 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + + I + +V + I+S L+ V A + +GA FV ++ +VVY GAV+V Sbjct: 28 WILAAVIIAGAIGMVMCKELIHSALCLLLVMVGVAIEYATMGAPFVFVVQIVVYAGAVMV 87 Query: 69 FFLFIIMMLDIDIEVAEPRK----KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 LFI+MM+ E A+ K + + I LI A N +A +S Sbjct: 88 MILFIVMMVGARGEAADGEKTATGTSHTVLTGVAAIALLALIGIAVNMSTLTAPRGMSEA 147 Query: 125 -VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G NV +G ++ +Y E+ +L+++ +GA++++ R R Sbjct: 148 NAEHGGNVAGLGVEIFNKYVVGFEVLSALLIVAAVGAMIMIFRVR 192 >gi|152990047|ref|YP_001355769.1| NADH dehydrogenase subunit J [Nitratiruptor sp. SB155-2] gi|151421908|dbj|BAF69412.1| NADH-quinone oxidoreductase, chain J [Nitratiruptor sp. SB155-2] Length = 184 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 95/184 (51%), Gaps = 1/184 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++++ FYLF+ + I + V +N +YS+ +L V + F LL A+F+ ++ ++VY Sbjct: 2 VEAIAFYLFAALTIFMFAVTVMSKNALYSMSALAAGMVFISAFFFLLDADFLGVVQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+ + F +M +D +V E + + F G++A L++ +V L Sbjct: 62 GGAVMALYAFAMMFMDTTKDVKEKNPSKKIV-FFLSGMVALLLVIILLTPIVSDKVQALY 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + + N E +G VL+T+Y P E++ +LL++MI I+L + + I +++E Sbjct: 121 PVSDEVGNAEAVGIVLFTKYLVPFELAAVMLLVAMIAGIILASKRMDESITLKIDQEIEE 180 Query: 183 NPDN 186 Sbjct: 181 KAGK 184 >gi|308062553|gb|ADO04441.1| NADH dehydrogenase subunit J [Helicobacter pylori Cuz20] Length = 182 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSIGENLSEQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N+E IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|11466755|ref|NP_039351.1| NADH dehydrogenase subunit 6 [Marchantia polymorpha] gi|128802|sp|P06266|NU6C_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|11726|emb|CAA28137.1| unnamed protein product [Marchantia polymorpha] Length = 191 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 11/172 (6%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F I+ S V+ + N +YS L F FV + L+LLL A+FVA +++YVGAV Sbjct: 11 IFLFLESGLILGSLGVILLTNIVYSALFLGFVFVCISLLYLLLNADFVAAAQILIYVGAV 70 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL----- 121 V +F +M+++ +G L + + +NF+ ++ ++ Sbjct: 71 NVLIIFAVMLINKKQ--YSNFFVYWTIGDGITLTLCTSIFLLLNNFISNTSWSKIFLMTK 128 Query: 122 ----SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + N V +IG L T++ P E+ ILL+++IGAI L R ++ Sbjct: 129 PNLVVKDIILINTVRHIGSELLTEFLLPFELMSIILLVALIGAITLARREKK 180 >gi|200004048|ref|YP_002221382.1| NADH dehydrogenase subunit 6 [Blastocystis sp. NandII] gi|156617373|gb|ABU87591.1| NADH dehydrogenase subunit 6 [Blastocystis sp. NandII] Length = 194 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 57/190 (30%), Positives = 107/190 (56%), Gaps = 5/190 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF+LF+ + IIS F+ ++V N IY+V LI AF ++ + LL +++A++ +++YVGA+ Sbjct: 4 FFFLFASIIIISVFMTISVNNAIYAVLFLILAFFSSMCILFLLNVDYLALMFILIYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF----SAEGELS 122 + FLF++MML I I K F+ ++ +++ F VF Sbjct: 64 TILFLFVVMMLKIKINEKNTTKFISFINIIICCLIIYNVLLNTDIFNVFLNTDLTYTNWF 123 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR-QDISKQLE 181 ++ +N++ +G+V++ Y + +SGF+LL+ MI AI+L + ++R Q + +QL Sbjct: 124 SNLYYIDNIKMLGQVIFNNYYFYFILSGFVLLIGMISAILLSKESNKVVRRYQLVYQQLS 183 Query: 182 SNPDNSIVMV 191 N++ +V Sbjct: 184 REVSNAVFLV 193 >gi|332662322|ref|YP_004445110.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliscomenobacter hydrossis DSM 1100] gi|332331136|gb|AEE48237.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliscomenobacter hydrossis DSM 1100] Length = 165 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 5/167 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+ S +AII + V RN +YSV SL+ F AG++L L AEFVA++ ++VY Sbjct: 1 MDQVIFYILSTIAIIGALSTVVSRNAMYSVLSLVVTFFALAGIYLQLNAEFVAIVHIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GA++V FLF++MML+++ RK +L I+AA L + N + A G Sbjct: 61 AGAIMVLFLFVVMMLNLNTVTVTIRKNPLIKYLAVLVGIIMAALLGFASMNTALPIARGN 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 S V V+ +GK+L+ +Y P E+ +L+ +M+G IVL + Sbjct: 121 TSAEV---GTVKVLGKMLFNEYLLPFELISVLLIATMVGVIVLTKKE 164 >gi|133900530|gb|ABO41431.1| NADH dehydrogenase subunit 6 [Podostemum ceratophyllum] Length = 179 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFFILVFCDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----------MVFSAEGELSRLVFK 127 I I R S IG++ + F + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILEFESIPLLPTQKQTAYLKYTVYAGKVRP 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y + L +S ILL++MIGAIVL + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFFWLLLSSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDF 177 >gi|268678789|ref|YP_003303220.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfurospirillum deleyianum DSM 6946] gi|268616820|gb|ACZ11185.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfurospirillum deleyianum DSM 6946] Length = 184 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 93/165 (56%), Gaps = 3/165 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FY+FS + + +VV +N +Y++ +L + +G F +L AEF+ ++ +VVY Sbjct: 3 ETVAFYIFSILTLGMFGIVVMSKNALYAMSALAGGMIFISGFFFILDAEFLGVVQIVVYS 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122 GA++ + F +M D +V+E + + ++ + I++A LIV + S E S Sbjct: 63 GAIMALYAFGMMFFDTTRDVSEKMRSKKI--AYTLSIVSAVLIVAILCMPLVSESIEASY 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + N++ +G +L+T+Y P E++ +LL++MI IVL + Sbjct: 121 PAIENVGNIQMVGLILFTKYLVPFELAAIMLLVAMISGIVLASKK 165 >gi|298245620|ref|ZP_06969426.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter racemifer DSM 44963] gi|297553101|gb|EFH86966.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter racemifer DSM 44963] Length = 175 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 99/174 (56%), Gaps = 8/174 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +L F++ + + ++++ LVV++RN ++S +L F FV A G+++LL AEF+A++ ++ Sbjct: 1 MDFAALMFWILATILVVAALLVVSLRNIVHSAIALFFVFVMAGGIYILLNAEFIAIVQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF---S 116 +Y GAV + LF +M+ I ++ P + ++ + + ++ N + + Sbjct: 61 IYAGAVTILILFALMLTRIGGLQRTNPANRLWWIAAIISAFVGGSILYGLFNSTLAISNT 120 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLR 166 + G +L NNV IG++LY+ Y P EI+ +LL++++GAIV+ Sbjct: 121 STGGGHQLPAHINNVVAIGQLLYSPTSYSYILPFEIASVVLLVAIVGAIVIGRE 174 >gi|308064047|gb|ADO05934.1| NADH dehydrogenase subunit J [Helicobacter pylori Sat464] Length = 182 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSIGENLSNQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|295098081|emb|CBK87171.1| NADH dehydrogenase subunit J [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 184 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLAVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|261340668|ref|ZP_05968526.1| NADH dehydrogenase I, J subunit [Enterobacter cancerogenus ATCC 35316] gi|288317082|gb|EFC56020.1| NADH dehydrogenase I, J subunit [Enterobacter cancerogenus ATCC 35316] Length = 184 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGIALFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|217033590|ref|ZP_03439018.1| hypothetical protein HP9810_899g26 [Helicobacter pylori 98-10] gi|216943936|gb|EEC23370.1| hypothetical protein HP9810_899g26 [Helicobacter pylori 98-10] gi|261838592|gb|ACX98358.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 51] gi|317178437|dbj|BAJ56225.1| NADH dehydrogenase subunit J [Helicobacter pylori F30] Length = 182 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVAILLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|170767399|ref|ZP_02901852.1| NADH-quinone oxidoreductase, J subunit [Escherichia albertii TW07627] gi|170123733|gb|EDS92664.1| NADH-quinone oxidoreductase, J subunit [Escherichia albertii TW07627] Length = 184 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 92/190 (48%), Gaps = 10/190 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 + + +G L+ Y +E++ +LL ++ A + R++ + ++ SN Sbjct: 120 DGTPVSAKAVGITLFGPYVLAVELASMLLLAGLVVAF--------HVGREEHAGEVLSNR 171 Query: 185 DNSIVMVKVK 194 + K + Sbjct: 172 KDDSAKRKTE 181 >gi|11467872|ref|NP_050923.1| NADH dehydrogenase subunit 6 [Nephroselmis olivacea] gi|14194995|sp|Q9TKV3|NU6C_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|5880801|gb|AAD54894.1|AF137379_117 subunit 6 of NADH-plastoquinoneoxidoreductase [Nephroselmis olivacea] Length = 169 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 5/157 (3%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 + ++ V+ + + +Y+ F L F AG+++LL A+FVA ++VYVGA+ V Sbjct: 12 LTTGILLGCLGVIFLPSIVYAAFLLGAVFFCLAGIYVLLHADFVAAAQVLVYVGAINVLI 71 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 LF IM+++ + L L+ M+ + + N+ Sbjct: 72 LFAIMLVNPQDAPPRALDSPPLIPGIACIGLLGVLV-----QMISTTSWLTPPWTPEPNS 126 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +G L++ E+ +LL++++GAIVL R Sbjct: 127 LPVLGGHLFSDCLLAFEVMSLVLLVALVGAIVLARRE 163 >gi|15802827|ref|NP_288854.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 EDL933] gi|15832418|ref|NP_311191.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str. Sakai] gi|16130215|ref|NP_416783.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K-12 substr. MG1655] gi|24113652|ref|NP_708162.1| NADH dehydrogenase subunit J [Shigella flexneri 2a str. 301] gi|26248667|ref|NP_754707.1| NADH dehydrogenase subunit J [Escherichia coli CFT073] gi|30063706|ref|NP_837877.1| NADH dehydrogenase subunit J [Shigella flexneri 2a str. 2457T] gi|74312798|ref|YP_311217.1| NADH dehydrogenase subunit J [Shigella sonnei Ss046] gi|82544758|ref|YP_408705.1| NADH dehydrogenase subunit J [Shigella boydii Sb227] gi|82777688|ref|YP_404037.1| NADH dehydrogenase subunit J [Shigella dysenteriae Sd197] gi|89109098|ref|AP_002878.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K-12 substr. W3110] gi|91211572|ref|YP_541558.1| NADH dehydrogenase subunit J [Escherichia coli UTI89] gi|110642484|ref|YP_670214.1| NADH dehydrogenase subunit J [Escherichia coli 536] gi|110806243|ref|YP_689763.1| NADH dehydrogenase subunit J [Shigella flexneri 5 str. 8401] gi|117624469|ref|YP_853382.1| NADH dehydrogenase subunit J [Escherichia coli APEC O1] gi|157157709|ref|YP_001463623.1| NADH dehydrogenase subunit J [Escherichia coli E24377A] gi|157161768|ref|YP_001459086.1| NADH dehydrogenase subunit J [Escherichia coli HS] gi|168748129|ref|ZP_02773151.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4113] gi|168755032|ref|ZP_02780039.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4401] gi|168761281|ref|ZP_02786288.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4501] gi|168767906|ref|ZP_02792913.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4486] gi|168772994|ref|ZP_02798001.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4196] gi|168780135|ref|ZP_02805142.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4076] gi|168787187|ref|ZP_02812194.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC869] gi|168798450|ref|ZP_02823457.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC508] gi|170019411|ref|YP_001724365.1| NADH dehydrogenase subunit J [Escherichia coli ATCC 8739] gi|170081897|ref|YP_001731217.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K-12 substr. DH10B] gi|170681867|ref|YP_001744478.1| NADH dehydrogenase subunit J [Escherichia coli SMS-3-5] gi|187731180|ref|YP_001881101.1| NADH dehydrogenase subunit J [Shigella boydii CDC 3083-94] gi|188491681|ref|ZP_02998951.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 53638] gi|191166504|ref|ZP_03028334.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B7A] gi|191170098|ref|ZP_03031652.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli F11] gi|193062313|ref|ZP_03043408.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E22] gi|193068217|ref|ZP_03049181.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E110019] gi|194427097|ref|ZP_03059648.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B171] gi|194433331|ref|ZP_03065611.1| NADH-quinone oxidoreductase, J subunit [Shigella dysenteriae 1012] gi|194436249|ref|ZP_03068351.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 101-1] gi|195935657|ref|ZP_03081039.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str. EC4024] gi|208807034|ref|ZP_03249371.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4206] gi|208812963|ref|ZP_03254292.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4045] gi|208818254|ref|ZP_03258574.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4042] gi|209397133|ref|YP_002271689.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4115] gi|209919728|ref|YP_002293812.1| NADH dehydrogenase subunit J [Escherichia coli SE11] gi|215487493|ref|YP_002329924.1| NADH dehydrogenase subunit J [Escherichia coli O127:H6 str. E2348/69] gi|217327964|ref|ZP_03444047.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. TW14588] gi|218548271|ref|YP_002382062.1| NADH dehydrogenase subunit J [Escherichia fergusonii ATCC 35469] gi|218554836|ref|YP_002387749.1| NADH dehydrogenase subunit J [Escherichia coli IAI1] gi|218559193|ref|YP_002392106.1| NADH dehydrogenase subunit J [Escherichia coli S88] gi|218690440|ref|YP_002398652.1| NADH dehydrogenase subunit J [Escherichia coli ED1a] gi|218695879|ref|YP_002403546.1| NADH dehydrogenase subunit J [Escherichia coli 55989] gi|218700754|ref|YP_002408383.1| NADH dehydrogenase subunit J [Escherichia coli IAI39] gi|218705810|ref|YP_002413329.1| NADH dehydrogenase subunit J [Escherichia coli UMN026] gi|227887336|ref|ZP_04005141.1| NADH dehydrogenase subunit J [Escherichia coli 83972] gi|237704754|ref|ZP_04535235.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|238901455|ref|YP_002927251.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli BW2952] gi|253772798|ref|YP_003035629.1| NADH dehydrogenase subunit J [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162289|ref|YP_003045397.1| NADH dehydrogenase subunit J [Escherichia coli B str. REL606] gi|254794172|ref|YP_003079009.1| NADH dehydrogenase subunit J [Escherichia coli O157:H7 str. TW14359] gi|256017564|ref|ZP_05431429.1| NADH dehydrogenase subunit J [Shigella sp. D9] gi|256022036|ref|ZP_05435901.1| NADH dehydrogenase subunit J [Escherichia sp. 4_1_40B] gi|260844867|ref|YP_003222645.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O103:H2 str. 12009] gi|260856324|ref|YP_003230215.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O26:H11 str. 11368] gi|260869003|ref|YP_003235405.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O111:H- str. 11128] gi|261223266|ref|ZP_05937547.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O157:H7 str. FRIK2000] gi|261259184|ref|ZP_05951717.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O157:H7 str. FRIK966] gi|293405746|ref|ZP_06649738.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1412] gi|293410640|ref|ZP_06654216.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B354] gi|293446617|ref|ZP_06663039.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B088] gi|297518347|ref|ZP_06936733.1| NADH dehydrogenase subunit J [Escherichia coli OP50] gi|298381429|ref|ZP_06991028.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1302] gi|300818120|ref|ZP_07098332.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 107-1] gi|300822151|ref|ZP_07102293.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 119-7] gi|300896954|ref|ZP_07115435.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 198-1] gi|300903665|ref|ZP_07121581.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 84-1] gi|300918555|ref|ZP_07135145.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 115-1] gi|300924539|ref|ZP_07140503.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 182-1] gi|300936844|ref|ZP_07151733.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 21-1] gi|300948576|ref|ZP_07162669.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 116-1] gi|300956460|ref|ZP_07168749.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 175-1] gi|300981078|ref|ZP_07175350.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 200-1] gi|300983375|ref|ZP_07176559.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 45-1] gi|301024078|ref|ZP_07187792.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 69-1] gi|301026950|ref|ZP_07190343.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 196-1] gi|301049033|ref|ZP_07196018.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 185-1] gi|301303261|ref|ZP_07209386.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 124-1] gi|301328772|ref|ZP_07221820.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 78-1] gi|301647623|ref|ZP_07247419.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 146-1] gi|306814609|ref|ZP_07448771.1| NADH dehydrogenase subunit J [Escherichia coli NC101] gi|307138944|ref|ZP_07498300.1| NADH dehydrogenase subunit J [Escherichia coli H736] gi|307311160|ref|ZP_07590804.1| NADH dehydrogenase (quinone) [Escherichia coli W] gi|309785016|ref|ZP_07679649.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella dysenteriae 1617] gi|309793159|ref|ZP_07687587.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 145-7] gi|312967578|ref|ZP_07781793.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 2362-75] gi|312973461|ref|ZP_07787633.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 1827-70] gi|331642918|ref|ZP_08344053.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H736] gi|331647935|ref|ZP_08349027.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli M605] gi|331653722|ref|ZP_08354723.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli M718] gi|331658360|ref|ZP_08359322.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA206] gi|331663794|ref|ZP_08364704.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA143] gi|331668978|ref|ZP_08369826.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA271] gi|331673785|ref|ZP_08374548.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA280] gi|331678226|ref|ZP_08378901.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H591] gi|331683952|ref|ZP_08384548.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H299] gi|332278574|ref|ZP_08390987.1| NADH:ubiquinone oxidoreductase membrane subunit J [Shigella sp. D9] gi|84028757|sp|P0AFE2|NUOJ_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J; AltName: Full=NUO10 gi|84028758|sp|P0AFE1|NUOJ_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J; AltName: Full=NUO10 gi|84028759|sp|P0AFE0|NUOJ_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J; AltName: Full=NUO10 gi|84028760|sp|P0AFE3|NUOJ_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|12516630|gb|AAG57409.1|AE005460_3 NADH dehydrogenase I chain J [Escherichia coli O157:H7 str. EDL933] gi|26109072|gb|AAN81275.1|AE016763_234 NADH dehydrogenase I chain J [Escherichia coli CFT073] gi|1788616|gb|AAC75340.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K-12 substr. MG1655] gi|1799640|dbj|BAA16108.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K12 substr. W3110] gi|13362634|dbj|BAB36587.1| NADH dehydrogenase I chain J [Escherichia coli O157:H7 str. Sakai] gi|24052716|gb|AAN43869.1| NADH dehydrogenase I chain J [Shigella flexneri 2a str. 301] gi|30041961|gb|AAP17687.1| NADH dehydrogenase I chain J [Shigella flexneri 2a str. 2457T] gi|73856275|gb|AAZ88982.1| NADH dehydrogenase I chain J [Shigella sonnei Ss046] gi|81241836|gb|ABB62546.1| NADH dehydrogenase I chain J [Shigella dysenteriae Sd197] gi|81246169|gb|ABB66877.1| NADH dehydrogenase I chain J [Shigella boydii Sb227] gi|91073146|gb|ABE08027.1| NADH dehydrogenase I chain J [Escherichia coli UTI89] gi|110344076|gb|ABG70313.1| NADH dehydrogenase I chain J [Escherichia coli 536] gi|110615791|gb|ABF04458.1| NADH dehydrogenase I chain J [Shigella flexneri 5 str. 8401] gi|115513593|gb|ABJ01668.1| NADH dehydrogenase I chain J [Escherichia coli APEC O1] gi|157067448|gb|ABV06703.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli HS] gi|157079739|gb|ABV19447.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E24377A] gi|169754339|gb|ACA77038.1| NADH dehydrogenase (quinone) [Escherichia coli ATCC 8739] gi|169889732|gb|ACB03439.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli str. K-12 substr. DH10B] gi|170519585|gb|ACB17763.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli SMS-3-5] gi|187428172|gb|ACD07446.1| NADH-quinone oxidoreductase, J subunit [Shigella boydii CDC 3083-94] gi|187771333|gb|EDU35177.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4196] gi|188017289|gb|EDU55411.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4113] gi|188486880|gb|EDU61983.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 53638] gi|189002049|gb|EDU71035.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4076] gi|189357621|gb|EDU76040.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4401] gi|189363001|gb|EDU81420.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4486] gi|189368227|gb|EDU86643.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4501] gi|189372886|gb|EDU91302.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC869] gi|189378912|gb|EDU97328.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC508] gi|190903464|gb|EDV63183.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B7A] gi|190909614|gb|EDV69199.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli F11] gi|192931979|gb|EDV84578.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E22] gi|192958496|gb|EDV88935.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli E110019] gi|194414718|gb|EDX30989.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli B171] gi|194418425|gb|EDX34514.1| NADH-quinone oxidoreductase, J subunit [Shigella dysenteriae 1012] gi|194424977|gb|EDX40962.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli 101-1] gi|208726835|gb|EDZ76436.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4206] gi|208734240|gb|EDZ82927.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4045] gi|208738377|gb|EDZ86059.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4042] gi|209158533|gb|ACI35966.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. EC4115] gi|209765148|gb|ACI80886.1| NADH dehydrogenase I chain J [Escherichia coli] gi|209765150|gb|ACI80887.1| NADH dehydrogenase I chain J [Escherichia coli] gi|209765152|gb|ACI80888.1| NADH dehydrogenase I chain J [Escherichia coli] gi|209765156|gb|ACI80890.1| NADH dehydrogenase I chain J [Escherichia coli] gi|209912987|dbj|BAG78061.1| NADH dehydrogenase I chain J [Escherichia coli SE11] gi|215265565|emb|CAS09968.1| NADH: ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O127:H6 str. E2348/69] gi|217320331|gb|EEC28756.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli O157:H7 str. TW14588] gi|218352611|emb|CAU98392.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli 55989] gi|218355812|emb|CAQ88425.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia fergusonii ATCC 35469] gi|218361604|emb|CAQ99196.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli IAI1] gi|218365962|emb|CAR03706.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli S88] gi|218370740|emb|CAR18553.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli IAI39] gi|218428004|emb|CAR08775.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli ED1a] gi|218432907|emb|CAR13801.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli UMN026] gi|222034036|emb|CAP76777.1| NadH-quinone oxidoreductase subunit J [Escherichia coli LF82] gi|226901120|gb|EEH87379.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|227835686|gb|EEJ46152.1| NADH dehydrogenase subunit J [Escherichia coli 83972] gi|238861875|gb|ACR63873.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli BW2952] gi|242377913|emb|CAQ32682.1| NADH:ubiquinone oxidoreductase, membrane subunit J, subunit of NADH:ubiquinone oxidoreductase I [Escherichia coli BL21(DE3)] gi|253323842|gb|ACT28444.1| NADH dehydrogenase (quinone) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974190|gb|ACT39861.1| NADH dehydrogenase subunit J [Escherichia coli B str. REL606] gi|253978357|gb|ACT44027.1| NADH dehydrogenase subunit J [Escherichia coli BL21(DE3)] gi|254593572|gb|ACT72933.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O157:H7 str. TW14359] gi|257754973|dbj|BAI26475.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O26:H11 str. 11368] gi|257760014|dbj|BAI31511.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O103:H2 str. 12009] gi|257765359|dbj|BAI36854.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli O111:H- str. 11128] gi|260448627|gb|ACX39049.1| NADH dehydrogenase (quinone) [Escherichia coli DH1] gi|281179367|dbj|BAI55697.1| NADH dehydrogenase I chain J [Escherichia coli SE15] gi|281601721|gb|ADA74705.1| NADH-quinone oxidoreductase subunit J [Shigella flexneri 2002017] gi|284922268|emb|CBG35353.1| NADH-quinone oxidoreductase chain J [Escherichia coli 042] gi|291323447|gb|EFE62875.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B088] gi|291427954|gb|EFF00981.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1412] gi|291471108|gb|EFF13592.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B354] gi|294489634|gb|ADE88390.1| NADH-quinone oxidoreductase, J subunit [Escherichia coli IHE3034] gi|298278871|gb|EFI20385.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli FVEC1302] gi|299879497|gb|EFI87708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 196-1] gi|300299142|gb|EFJ55527.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 185-1] gi|300307691|gb|EFJ62211.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 200-1] gi|300316730|gb|EFJ66514.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 175-1] gi|300359222|gb|EFJ75092.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 198-1] gi|300396734|gb|EFJ80272.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 69-1] gi|300404321|gb|EFJ87859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 84-1] gi|300408541|gb|EFJ92079.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 45-1] gi|300414290|gb|EFJ97600.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 115-1] gi|300419257|gb|EFK02568.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 182-1] gi|300451924|gb|EFK15544.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 116-1] gi|300458031|gb|EFK21524.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 21-1] gi|300525281|gb|EFK46350.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 119-7] gi|300529264|gb|EFK50326.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 107-1] gi|300841435|gb|EFK69195.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 124-1] gi|300844834|gb|EFK72594.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 78-1] gi|301074250|gb|EFK89056.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 146-1] gi|305852003|gb|EFM52455.1| NADH dehydrogenase subunit J [Escherichia coli NC101] gi|306908666|gb|EFN39163.1| NADH dehydrogenase (quinone) [Escherichia coli W] gi|307554342|gb|ADN47117.1| NADH dehydrogenase I chain J [Escherichia coli ABU 83972] gi|307626184|gb|ADN70488.1| NADH dehydrogenase subunit J [Escherichia coli UM146] gi|308123445|gb|EFO60707.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 145-7] gi|308927386|gb|EFP72860.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella dysenteriae 1617] gi|309702592|emb|CBJ01920.1| NADH-quinone oxidoreductase chain J [Escherichia coli ETEC H10407] gi|310332056|gb|EFP99291.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 1827-70] gi|312287775|gb|EFR15680.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 2362-75] gi|312946898|gb|ADR27725.1| NADH dehydrogenase subunit J [Escherichia coli O83:H1 str. NRG 857C] gi|313651103|gb|EFS15502.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri 2a str. 2457T] gi|315061572|gb|ADT75899.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli W] gi|315136914|dbj|BAJ44073.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli DH1] gi|315255214|gb|EFU35182.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 85-1] gi|315285920|gb|EFU45358.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 110-3] gi|315292247|gb|EFU51599.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 153-1] gi|315298121|gb|EFU57390.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 16-3] gi|315615549|gb|EFU96181.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 3431] gi|320177162|gb|EFW52174.1| NADH-ubiquinone oxidoreductase chain J [Shigella dysenteriae CDC 74-1112] gi|320183375|gb|EFW58227.1| NADH-ubiquinone oxidoreductase chain J [Shigella flexneri CDC 796-83] gi|320192099|gb|EFW66744.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7 str. EC1212] gi|320199868|gb|EFW74457.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli EC4100B] gi|320641107|gb|EFX10586.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H7 str. G5101] gi|320646495|gb|EFX15414.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H- str. 493-89] gi|320651592|gb|EFX19972.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H- str. H 2687] gi|320657344|gb|EFX25146.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667864|gb|EFX34772.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O157:H7 str. LSU-61] gi|323156430|gb|EFZ42585.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli EPECa14] gi|323161614|gb|EFZ47499.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli E128010] gi|323171961|gb|EFZ57605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli LT-68] gi|323176795|gb|EFZ62385.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 1180] gi|323184401|gb|EFZ69777.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli 1357] gi|323187995|gb|EFZ73290.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli RN587/1] gi|323377848|gb|ADX50116.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli KO11] gi|323936570|gb|EGB32857.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli E1520] gi|323941023|gb|EGB37210.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli E482] gi|323944793|gb|EGB40859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli H120] gi|323956046|gb|EGB51799.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli H263] gi|323961463|gb|EGB57073.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli H489] gi|323967721|gb|EGB63133.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli M863] gi|323973015|gb|EGB68209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli TA007] gi|323977519|gb|EGB72605.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli TW10509] gi|324006670|gb|EGB75889.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 57-2] gi|324013180|gb|EGB82399.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 60-1] gi|324020876|gb|EGB90095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 117-3] gi|324112812|gb|EGC06788.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia fergusonii B253] gi|324117842|gb|EGC11741.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli E1167] gi|325496685|gb|EGC94544.1| NADH dehydrogenase subunit J [Escherichia fergusonii ECD227] gi|326339631|gb|EGD63442.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7 str. 1125] gi|326344093|gb|EGD67854.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli O157:H7 str. 1044] gi|327252550|gb|EGE64209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Escherichia coli STEC_7v] gi|330912105|gb|EGH40615.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli AA86] gi|331039716|gb|EGI11936.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H736] gi|331043659|gb|EGI15797.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli M605] gi|331048571|gb|EGI20647.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli M718] gi|331056608|gb|EGI28617.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA206] gi|331059593|gb|EGI31570.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA143] gi|331064172|gb|EGI36083.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA271] gi|331069058|gb|EGI40450.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli TA280] gi|331074686|gb|EGI46006.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H591] gi|331078904|gb|EGI50106.1| NADH-quinone oxidoreductase subunit J (NADHdehydrogenase I subunit J) (NDH-1 subunit J) (NUO10) [Escherichia coli H299] gi|332088410|gb|EGI93528.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella boydii 5216-82] gi|332090625|gb|EGI95721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella dysenteriae 155-74] gi|332093678|gb|EGI98736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella boydii 3594-74] gi|332100926|gb|EGJ04272.1| NADH:ubiquinone oxidoreductase membrane subunit J [Shigella sp. D9] gi|332344061|gb|AEE57395.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Escherichia coli UMNK88] gi|332754928|gb|EGJ85293.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri 4343-70] gi|332755329|gb|EGJ85693.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri K-671] gi|332756223|gb|EGJ86574.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri 2747-71] gi|333001424|gb|EGK20992.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri VA-6] gi|333001957|gb|EGK21523.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri K-218] gi|333002647|gb|EGK22207.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri K-272] gi|333016220|gb|EGK35551.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri K-304] gi|333016531|gb|EGK35861.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella flexneri K-227] Length = 184 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|320196147|gb|EFW70771.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli WV_060327] Length = 184 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPVSAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|319955926|ref|YP_004167189.1| NADH dehydrogenase subunit j [Nitratifractor salsuginis DSM 16511] gi|319418330|gb|ADV45440.1| NADH dehydrogenase subunit J [Nitratifractor salsuginis DSM 16511] Length = 186 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ FY F+ + + V +N +Y++ SL V +GLF +LGA+F+ ++ L+VY Sbjct: 1 METFAFYFFAVLITALFLVTVLSQNILYAMTSLAAGMVLISGLFFILGADFLGVVQLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV+ + F +M D + E R L G+ A L+V + + L Sbjct: 61 VGAVMALYAFAMMFFDATGRIKE-RHSHPALVFLLGGLTAVMLVVIFAAPQIGHNIQALF 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +N +G VL+T+Y P E++ +LL++MI I+L + Sbjct: 120 PTADGMDNPHAVGLVLFTKYLVPFEVAAVMLLVAMIAGIILAGKK 164 >gi|317180995|dbj|BAJ58781.1| NADH dehydrogenase subunit J [Helicobacter pylori F32] Length = 182 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVAILLTLILSAPSIGENLSNQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|271501260|ref|YP_003334285.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech586] gi|270344815|gb|ACZ77580.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech586] Length = 183 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 94/184 (51%), Gaps = 5/184 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY G Sbjct: 2 EFAFYATAIIAVLATLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E K + +IG A LI+ A ++ + + + Sbjct: 62 AIMVLFVFVVMMLNLGNSVDEQEKL-WLKPAVWIGPGALSLILLAVIVKGITSITDQN-I 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQLE 181 V + + +G L+ Y +E++ +LL ++ A + +R K QD K++ Sbjct: 120 VGNMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGDLVAKDQDADKKIT 179 Query: 182 SNPD 185 Sbjct: 180 EERA 183 >gi|262195157|ref|YP_003266366.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliangium ochraceum DSM 14365] gi|262078504|gb|ACY14473.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Haliangium ochraceum DSM 14365] Length = 282 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 16/178 (8%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 SL F+LF+ + + S V+T RN I +V ++ F A ++ +L A F+A I ++VY Sbjct: 92 ASLMFWLFALLTVGGSIFVITRRNLISAVMGMVGTFFAIAAVYTMLFAHFLAAIQVLVYA 151 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAEGEL 121 GA++V F+F+IM+L+ + EP + G +G+ L A L+ + A + V + +L Sbjct: 152 GAIMVLFVFVIMILNKPED--EPWGRSGIIGNVLGSALVAYLLWRIGAVLWAVPVSPAQL 209 Query: 122 SRL------------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V + IG+ L+ Y +P E +LL++++GA+ + H Sbjct: 210 LPPGGVTVVTGVTETVHDYGSTMAIGQNLFRDYLFPFEAVSLVLLIAVVGALAVARPH 267 >gi|319650856|ref|ZP_08004993.1| hypothetical protein HMPREF1013_01599 [Bacillus sp. 2_A_57_CT2] gi|317397454|gb|EFV78155.1| hypothetical protein HMPREF1013_01599 [Bacillus sp. 2_A_57_CT2] Length = 173 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 92/167 (55%), Gaps = 4/167 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + L F + +A+I L++ + ++ V +L+F FV+ AG+++LL AEF+A + +++Y Sbjct: 6 EFLAFMFLALVAVIGGVLLLNLTKVVHMVVALVFTFVSIAGIYVLLSAEFLAAVQILIYS 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+ + LF IM L + +EP+ R F+G+L V +++ + + Sbjct: 66 GAITIIMLFGIM-LTRHNDTSEPKTGRFRKLLLFLGVLGFAFAVYIG---IYNLDLPSAP 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 NN E IG LY+++ P E++ +LL+++IG+IVL R Sbjct: 122 NDLHVNNTEQIGIELYSKFIIPFEVTSVLLLVALIGSIVLAKRDDEK 168 >gi|146312466|ref|YP_001177540.1| NADH dehydrogenase subunit J [Enterobacter sp. 638] gi|145319342|gb|ABP61489.1| NADH dehydrogenase subunit J [Enterobacter sp. 638] Length = 184 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGAEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKEVGIALFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|253989008|ref|YP_003040364.1| NADH dehydrogenase subunit J [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780458|emb|CAQ83620.1| nadh dehydrogenase i chain j (nadh-ubiquinone oxidoreductase chain j) [Photorhabdus asymbiotica] Length = 181 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 90/168 (53%), Gaps = 2/168 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY +AI+++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFTFYTAGLVAILATIRVITHTNPVHALLYLIVSLLALSAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELS- 122 A++V F+F++MML++ V E + ++ GIL+A L+V ++ + G ++ Sbjct: 62 AIMVLFVFVVMMLNLGKSVVEQERVWLKPRTWIGPGILSAVLLVILVYTIINVSHGNIAD 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + + +G L+ Y +E++ +LL M+ A + H++ Sbjct: 122 NITGEVISAKEVGISLFGPYVLAVELASLLLLAGMVVAYHIGREHKQG 169 >gi|51893909|ref|YP_076600.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM 14863] gi|51857598|dbj|BAD41756.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM 14863] Length = 176 Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 82/167 (49%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q F + + + ++S++ +VT ++ + +F AG+FLL+ AEF+A I ++ Sbjct: 7 MSGQFWTFIILAVVTLVSTYRMVTTPLITHAALFMALSFTAVAGIFLLMQAEFIAAIQVL 66 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA+ +F IM+ + + +++ S ++ + ++ +A Sbjct: 67 VYAGAITTMVIFAIMLSGLRDIKRQQQERVKLWRSNPAVLVVGAVFAAFMLYLYSTANLP 126 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + V IG L+T Y P E++ +LL++MIGAI+L + Sbjct: 127 AGGGERQVVPVSAIGSQLFTTYVIPFEVASILLLVAMIGAIILTAKE 173 >gi|297380449|gb|ADI35336.1| NAD(P)H-quinone oxidoreductase chain 6 [Helicobacter pylori v225d] Length = 182 Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|308183379|ref|YP_003927506.1| NADH dehydrogenase subunit J [Helicobacter pylori PeCan4] gi|308065564|gb|ADO07456.1| NADH dehydrogenase subunit J [Helicobacter pylori PeCan4] Length = 182 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCALSFGVAILLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|77917828|ref|YP_355643.1| NADH dehydrogenase I subunit J [Pelobacter carbinolicus DSM 2380] gi|77543911|gb|ABA87473.1| NADH dehydrogenase subunit J [Pelobacter carbinolicus DSM 2380] Length = 171 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 4/175 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L FY+ + + ++++ L +T +NP+++V L+ A A L+ LLGA +A +++Y Sbjct: 1 MATLLFYILAVITLLATLLCLTRKNPVHAVLYLVHALFAVALLYFLLGAPLLAAWQVILY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IM++D +AE R+ G+ +L+ L+ C +V Sbjct: 61 AGAIMVLFLFVIMLIDP--SLAEKRRPGGWPRWLPAALLSGSLLACGGALIVMDPVATGG 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDIS 177 + F+ G+ L+ Y +EI ILL + +GA L RH R+D+S Sbjct: 119 IVSFQLT-PRAFGRALFENYGLAVEIISLILLFAAVGAFHLGRRHDSTT-REDVS 171 >gi|188533355|ref|YP_001907152.1| NADH dehydrogenase subunit J [Erwinia tasmaniensis Et1/99] gi|188028397|emb|CAO96258.1| NADH dehydrogenase I chain J [Erwinia tasmaniensis Et1/99] Length = 183 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL +A++++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYLCGLVAVLATLRVITHTNPVHALLYLIISLLAVSGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + K G + L + L++ + + S + Sbjct: 62 AIMVLFVFVVMMLNLGGAEVQQEKDWLKPGMWIGPGLLSLLLLVTLVYAILSVNDQGIDG 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +G L+ Y +E++ +LL ++ A + R Sbjct: 122 TMIDG--KQVGISLFGPYVLAVELASMLLLAGLVVAFHVGREQR 163 >gi|188528058|ref|YP_001910745.1| NADH dehydrogenase subunit J [Helicobacter pylori Shi470] gi|188144298|gb|ACD48715.1| NADH dehydrogenase subunit J [Helicobacter pylori Shi470] Length = 182 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCTLSFGVALLLTLILSAPSIGENLSNQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDVQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|253689140|ref|YP_003018330.1| NADH dehydrogenase (quinone) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755718|gb|ACT13794.1| NADH dehydrogenase (quinone) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 186 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 88/167 (52%), Gaps = 4/167 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY +AI+++ V+T NP++++ ++ + + AG+F LGA F ++++VY G Sbjct: 2 EFAFYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSR 123 A++V F+F++MML++ V E + ++ GIL+ L+V N ++ E ++ Sbjct: 62 AIMVLFVFVVMMLNLGNSVEEQERNWLKPSAWVGPGILSLALLVIVVNAILSLKEQGITG 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + +R Sbjct: 122 TPVEA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165 >gi|210135428|ref|YP_002301867.1| NADH dehydrogenase subunit J [Helicobacter pylori P12] gi|210133396|gb|ACJ08387.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori P12] Length = 182 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQNPKILCVLSFGVALLLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|307131806|ref|YP_003883822.1| NADH:ubiquinone oxidoreductase membrane subunit J [Dickeya dadantii 3937] gi|306529335|gb|ADM99265.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Dickeya dadantii 3937] Length = 183 Score = 117 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 84/166 (50%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY G Sbjct: 2 EFAFYATAIIAVLATLRVITHTNPVHALLYLIVSLLAVAGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E K + + + +++ + S G+ + Sbjct: 62 AIMVLFVFVVMMLNLGNSVDEQEKLWLKPSVWVGPGVLSLILLAIIVKGILSVTGQ--NI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + +R Sbjct: 120 AGNIVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165 >gi|257852606|gb|ACV71315.1| NADH dehydrogenase subunit 6 [Euphorbia polychroma] Length = 161 Score = 117 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM I I Sbjct: 1 RAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAE 60 Query: 84 AEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL----------VFKGNNVE 132 R S IG I E+ N + + + V N+E Sbjct: 61 IHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLE 120 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +G +LYT Y+ + ILL++MIGAIVL + Sbjct: 121 TLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTH 158 >gi|7649019|gb|AAF65737.1|AF228525_7 F420H2 dehydrogenase subunit FpoJ [Methanosarcina mazei Go1] Length = 176 Score = 117 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 2/168 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ F L + + + + VV ++ + + +LI AGL++LL A+F+ +I ++VY Sbjct: 11 LETAVFGLLALVTVFFAIFVVIAKDVVRAGLALIMCMFGVAGLYILLNAQFLGVIQVLVY 70 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +GA+ V LF +M+ +I + R +F + +L ++V + ++ EL Sbjct: 71 IGAIGVLILFAVMLTKREIGGGPVQINR--PLAFLVCLLFVAVVVTGAFGTSWNTVSELP 128 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +N+E IG +++T + P E+ +LL S+IGAI + Sbjct: 129 ENPADPSNIEGIGMLIFTHFVAPFEVLSIVLLASLIGAIYMAKGEGNR 176 >gi|291283521|ref|YP_003500339.1| NADH-quinone oxidoreductase subunit J [Escherichia coli O55:H7 str. CB9615] gi|209765154|gb|ACI80889.1| NADH dehydrogenase I chain J [Escherichia coli] gi|290763394|gb|ADD57355.1| NADH-quinone oxidoreductase subunit J [Escherichia coli O55:H7 str. CB9615] gi|320663046|gb|EFX30363.1| NADH:ubiquinone oxidoreductase subunit J [Escherichia coli O55:H7 str. USDA 5905] Length = 184 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|317178012|dbj|BAJ55801.1| NADH dehydrogenase subunit J [Helicobacter pylori F16] Length = 182 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAEGE 120 VGAVIV + F +M + EV E ++ L + G+ ++ ++ + S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVALLLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N+E IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDVQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|167549681|ref|ZP_02343440.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|198244071|ref|YP_002216390.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|238912401|ref|ZP_04656238.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197938587|gb|ACH75920.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205325286|gb|EDZ13125.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|326624141|gb|EGE30486.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 184 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ L+ + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAIMLAVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|296130542|ref|YP_003637792.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas flavigena DSM 20109] gi|296022357|gb|ADG75593.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas flavigena DSM 20109] Length = 325 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 87/167 (52%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F+ + ++++ ++ R +++ ++IF ++ A L++ GAEF+ ++ +VV Sbjct: 23 TAEAVLFWTLGPLMVLAALGLLLARKAVHAALAVIFIMISLAFLYVAQGAEFLGVVQVVV 82 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + L +++ E Sbjct: 83 YTGAVMMLFLFVLMLVGVDRSDSLVETIRGQRWIGLLAGLGLGVVLAGVVGRATYGAPEG 142 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +N E + V++ Q+ +E+ G +L+ + +GA+VL R R Sbjct: 143 LATANQPSNPEAVAHVIFGQHVLAMEVVGALLVTAALGALVLTHRGR 189 >gi|159901497|ref|YP_001547744.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Herpetosiphon aurantiacus ATCC 23779] gi|159894536|gb|ABX07616.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Herpetosiphon aurantiacus ATCC 23779] Length = 220 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 13/174 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + + + + S +VVTVRN I+S LI +F+ A L+LL+ AEF+A++ ++VY GAV Sbjct: 8 VFIVIALLTLGSGIMVVTVRNIIHSALWLIASFIGVAALYLLMEAEFLAVVQILVYAGAV 67 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA-----SNFMVFSAEGEL 121 + LF IM+ + + I + +IV S + S ++ Sbjct: 68 SILVLFAIMLTRQVTGEGVRVVFERWWVALLIALGLFGVIVPTLWQHGSTWEEASKLAQV 127 Query: 122 SRLVFKGN--------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +G IG+ +Y P E+ +LL+++IGAIV+ Sbjct: 128 GPAPVEGTAAAGLQVATATEIGRSFMGEYLLPFEVISILLLMALIGAIVIAYEE 181 >gi|217032332|ref|ZP_03437828.1| hypothetical protein HPB128_132g30 [Helicobacter pylori B128] gi|298735707|ref|YP_003728232.1| NADH dehydrogenase I subunit J [Helicobacter pylori B8] gi|216945998|gb|EEC24612.1| hypothetical protein HPB128_132g30 [Helicobacter pylori B128] gi|298354896|emb|CBI65768.1| NADH dehydrogenase I chain J [Helicobacter pylori B8] Length = 182 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVAVLLTLILSAPSIGENLSNQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|157325586|ref|YP_001468364.1| NADH dehydrogenase subunit 6 [Ipomoea purpurea] gi|221272327|sp|A7Y3L7|NU6C_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|157056814|gb|ABV02404.1| NADH-plastoquinone oxidoreductase subunit 6 [Ipomoea purpurea] Length = 176 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ S VV NPIYS FSL V + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLILGSIGVVLFPNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V LF +M L+ + S FI +++ L + Sbjct: 67 VGAINVLILFAVMFLNGSEYSNDFPLWTLGDGITSQVCISLFISLISTILDTSWYGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ +N + IG L T + P E+ ILL+++IGAIV+ + Sbjct: 127 TRSNQIIEQDL-ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIVIARQ 176 >gi|254779812|ref|YP_003057918.1| NADH dehydrogenase subunit J [Helicobacter pylori B38] gi|254001724|emb|CAX29955.1| NADH-ubiquinone oxidoreductase, NQO10 subunit [Helicobacter pylori B38] Length = 182 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|15606571|ref|NP_213951.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5] gi|2983792|gb|AAC07350.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5] Length = 178 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ + L F FS +AI+S ++T+RNP+Y V +L+ + + AG+F GAE V + L+ Sbjct: 1 MMGRLLIFGFFSILAILSGIGIITLRNPVYVVVALLSSLIAVAGIFFTAGAELVGALQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAE 118 +Y A+ VF++ +I + + R G + + L E+IV + S E Sbjct: 61 IYAVAIAVFYIIVISAVPWEKAKKSESHYRFEGLISLPVVLFLYIEMIVVFLLGVKASPE 120 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 G++++ + K N E IG +L+++Y E+ +LL+ MIGA+++ + Sbjct: 121 GKIAKFIEKFGNTEVIGAILFSKYFLAFEVVSIVLLMGMIGAVLIGRKE 169 >gi|261839987|gb|ACX99752.1| NADH dehydrogenase subunit J [Helicobacter pylori 52] gi|317013057|gb|ADU83665.1| NADH dehydrogenase subunit J [Helicobacter pylori Lithuania75] Length = 182 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + IL ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVAILLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|308185017|ref|YP_003929150.1| NADH dehydrogenase subunit J [Helicobacter pylori SJM180] gi|308060937|gb|ADO02833.1| NADH dehydrogenase subunit J [Helicobacter pylori SJM180] Length = 182 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|157144789|ref|YP_001452108.1| NADH dehydrogenase subunit J [Citrobacter koseri ATCC BAA-895] gi|157081994|gb|ABV11672.1| hypothetical protein CKO_00516 [Citrobacter koseri ATCC BAA-895] Length = 184 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGISLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|15645883|ref|NP_208061.1| NADH dehydrogenase subunit J [Helicobacter pylori 26695] gi|2314434|gb|AAD08313.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Helicobacter pylori 26695] Length = 182 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|317009953|gb|ADU80533.1| NADH dehydrogenase subunit J [Helicobacter pylori India7] Length = 182 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCTLSFGVALLLTLILSAPSIGENLSNQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDVQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|323952073|gb|EGB47947.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli H252] Length = 184 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 81/164 (49%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGGFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|16761245|ref|NP_456862.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765647|ref|NP_461262.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141059|ref|NP_804401.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412783|ref|YP_149858.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180890|ref|YP_217307.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161502535|ref|YP_001569647.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161612952|ref|YP_001586917.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994668|ref|ZP_02575759.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229689|ref|ZP_02654747.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237337|ref|ZP_02662395.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242438|ref|ZP_02667370.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261664|ref|ZP_02683637.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465977|ref|ZP_02699847.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817950|ref|ZP_02829950.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445907|ref|YP_002041580.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451507|ref|YP_002046373.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470957|ref|ZP_03076941.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738076|ref|YP_002115389.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248229|ref|YP_002147278.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262113|ref|ZP_03162187.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361717|ref|YP_002141353.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200387795|ref|ZP_03214407.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929159|ref|ZP_03220302.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353435|ref|YP_002227236.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857738|ref|YP_002244389.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052936|ref|ZP_03345814.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419032|ref|ZP_03352098.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427018|ref|ZP_03359768.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580775|ref|ZP_03362601.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612296|ref|ZP_03370122.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213645877|ref|ZP_03375930.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865414|ref|ZP_03387533.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583194|ref|YP_002636992.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289829691|ref|ZP_06547232.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25285204|pir||AF0796 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420861|gb|AAL21221.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503544|emb|CAD07552.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Typhi] gi|29136685|gb|AAO68250.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127040|gb|AAV76546.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128523|gb|AAX66226.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160863882|gb|ABX20505.1| hypothetical protein SARI_00579 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161362316|gb|ABX66084.1| hypothetical protein SPAB_00658 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404570|gb|ACF64792.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409811|gb|ACF70030.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457321|gb|EDX46160.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713578|gb|ACF92799.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631291|gb|EDX49851.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093193|emb|CAR58637.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211932|gb|ACH49329.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240368|gb|EDY22988.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289699|gb|EDY29062.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604893|gb|EDZ03438.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321703|gb|EDZ06902.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273216|emb|CAR38179.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205327485|gb|EDZ14249.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335895|gb|EDZ22659.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338451|gb|EDZ25215.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205345142|gb|EDZ31906.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349398|gb|EDZ36029.1| NADH-quinone oxidoreductase, J subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709541|emb|CAR33886.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467721|gb|ACN45551.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247526|emb|CBG25353.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994415|gb|ACY89300.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158878|emb|CBW18391.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913311|dbj|BAJ37285.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086754|emb|CBY96526.1| NADH dehydrogenase I chain J [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222978|gb|EFX48049.1| NADH-ubiquinone oxidoreductase chain J [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617066|gb|EFY13972.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617628|gb|EFY14527.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624742|gb|EFY21571.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630291|gb|EFY27061.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634472|gb|EFY31205.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639182|gb|EFY35874.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640045|gb|EFY36712.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645734|gb|EFY42258.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651509|gb|EFY47884.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656069|gb|EFY52368.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659422|gb|EFY55669.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665882|gb|EFY62065.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669878|gb|EFY66019.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673864|gb|EFY69961.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678622|gb|EFY74678.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683582|gb|EFY79596.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687658|gb|EFY83628.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715369|gb|EFZ06940.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130651|gb|ADX18081.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193508|gb|EFZ78713.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198413|gb|EFZ83515.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201927|gb|EFZ86989.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208535|gb|EFZ93474.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209756|gb|EFZ94680.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218292|gb|EGA03002.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222950|gb|EGA07299.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227386|gb|EGA11551.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232287|gb|EGA16390.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235679|gb|EGA19763.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241160|gb|EGA25196.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244902|gb|EGA28904.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250021|gb|EGA33915.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251633|gb|EGA35501.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254944|gb|EGA38735.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323268100|gb|EGA51577.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270807|gb|EGA54245.1| NADH:ubiquinone oxidoreductase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326628527|gb|EGE34870.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989253|gb|AEF08236.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 184 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ L+ + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAIMLAVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|37526969|ref|NP_930313.1| NADH dehydrogenase subunit J [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786402|emb|CAE15455.1| NADH dehydrogenase I chain J (NADH-ubiquinone oxidoreductase chain J) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 181 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 90/168 (53%), Gaps = 2/168 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY +AI+++ V+T NPI+++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFTFYTAGLIAILATIRVITHTNPIHALLYLIVSLLALSAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELS- 122 A++V F+F++MML++ V E + ++ GIL+ L+V ++ + G+++ Sbjct: 62 AIMVLFVFVVMMLNLGKSVVEQERVWLKPRTWIGPGILSTMLLVVLVYTIINVSHGDIAD 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + + +G L+ Y +E++ +LL M+ A + H++ Sbjct: 122 NITGEVVSAKEVGISLFGPYVLAVELASLLLLAGMVVAYHIGREHKQG 169 >gi|317014661|gb|ADU82097.1| NADH:ubiquinone oxidoreductase subunit J [Helicobacter pylori Gambia94/24] Length = 182 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|307637940|gb|ADN80390.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 908] gi|325996544|gb|ADZ51949.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 2018] gi|325998133|gb|ADZ50341.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori 2017] Length = 182 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|304413379|ref|ZP_07394852.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Candidatus Regiella insecticola LSR1] gi|304284222|gb|EFL92615.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Candidatus Regiella insecticola LSR1] Length = 191 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY + +A++++ V++ NPI+++ L+ + + A +F LGA F + ++VY Sbjct: 1 MMEFVFYTAAVIAVLATLRVISHHNPIHALLYLVVSLLAIAAVFFSLGAYFAGALEIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F++MML++ + + K + L + ++ + S E+ Sbjct: 61 AGAIMVLFVFVVMMLNLGDSIQQQEKAWLKPSVWIGPGLLSLTLLVVLMMALGSVTAEIR 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A L R Sbjct: 121 GTMVDA---KQVGISLFGPYVLAVELASMLLLAGLVVAFHLGREDR 163 >gi|15612255|ref|NP_223908.1| NADH dehydrogenase subunit J [Helicobacter pylori J99] gi|4155780|gb|AAD06756.1| NADH oxidoreductase I [Helicobacter pylori J99] Length = 182 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L + V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N++ IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|317182518|dbj|BAJ60302.1| NADH dehydrogenase subunit J [Helicobacter pylori F57] Length = 182 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY F+ + + + +V+T N +Y++ +L V + F LL AEF+ ++ + VY Sbjct: 2 FETIAFYFFAILTLSMALVVITTTNILYAITALASNMVFISAFFFLLDAEFLGVVQITVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGE 120 VGAVIV + F +M + EV E ++ L SF + +L ++ S S + Sbjct: 62 VGAVIVMYAFGMMFFNSAAEVIERKQSPKILCALSFGVALLLTLILSAPSIGENLSKQVN 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + N+E IG VL+T Y P E + +LL++M+G I Sbjct: 122 SNAIDVQIPNIEAIGYVLFTNYLIPFEAAALMLLVAMVGGIA 163 >gi|325610525|gb|ADZ36471.1| NADH dehydrogenase subunit 6 [Franklinia alatamaha] Length = 176 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + F+ I+SS V+ NPIYS FSL FV + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGFVLILSSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V +F +M ++ + S F+ ++ L + Sbjct: 67 VGAINVLIIFAVMFMNGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWA 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 127 TKSNQILEQDL-ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|229158854|ref|ZP_04286912.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC 4342] gi|228624838|gb|EEK81607.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus ATCC 4342] Length = 162 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 83/156 (53%), Gaps = 1/156 (0%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 AII L++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F I Sbjct: 3 AIIGGVLMLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGI 62 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 M+ + R ++ FF + ++ A N + F+ E L N I Sbjct: 63 MLTKHNAGNESRLTLRKWI-IFFAVVAFGAVMYFAVNNIDFANESTQGSLPLHEKNTLQI 121 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G +LY++Y P E+ ILL++++GAI+L + ++ Sbjct: 122 GTLLYSKYIIPFELISVILLVALVGAIILAKKDEKE 157 >gi|322436011|ref|YP_004218223.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidobacterium sp. MP5ACTX9] gi|321163738|gb|ADW69443.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidobacterium sp. MP5ACTX9] Length = 174 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 10/174 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ F +F+ +AI + ++ R+PI S SL+ ++ A L+ LGAEF+A ++VY Sbjct: 1 MQLALFIIFAALAIAGALNLLLQRHPINSALSLVVVMMSLAVLYWTLGAEFLAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F++M+L+ E + G ++ G+ A + C +F+ + + Sbjct: 61 AGAIMVLFVFVVMLLN----AGEEERTTGSRAAYLAGVPGATAVFCLLSFVFLTESKAIG 116 Query: 123 RLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 G NN+ I +VL+T+ P E++ ++L++++GA+VL + + Sbjct: 117 NATLGGMLSGGVNNIAEISQVLFTRLLLPFEVTSVLILVAILGAVVLARKTEPE 170 >gi|293415573|ref|ZP_06658216.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B185] gi|291433221|gb|EFF06200.1| NADH-ubiquinone oxidoreductase chain J [Escherichia coli B185] Length = 184 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|223936523|ref|ZP_03628434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium Ellin514] gi|223894687|gb|EEF61137.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [bacterium Ellin514] Length = 191 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 4/169 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + ++S +++RN ++ SL F A ++L L A+FV ++VY+GA Sbjct: 3 ITFAIIAALTLVSGIAAMSLRNLVHCALSLAITFAGLAAMYLQLDAQFVGFAQILVYIGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V + +F I +L E +P R ++ I + +++ + S + Sbjct: 63 VAILIVFAI-LLTRSSEAPQPVISRSWIVGIAIAVAVFGVMI---RLIASSPIAQRGWPE 118 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G V+ IG L T++ PLE G +L ++ IGA+++ + + Q Sbjct: 119 KPGPTVKQIGDQLMTRFVLPLEAMGLLLTVATIGAVIIAMNEKTKAGLQ 167 >gi|297625737|ref|YP_003687500.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921502|emb|CBL56056.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 289 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 1/147 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q++ F++ +++I+ +V R P++S L V AGL+ L A F+ + ++V Sbjct: 6 TAQAVAFWVLGPLSVIAGVGMVVNRKPVHSALCLAGLMVCLAGLYASLDAPFLFVAQIIV 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEGE 120 Y GAV++ F+F +M++ ID +G + + + L+V A + S+ Sbjct: 66 YTGAVMMLFVFTMMVIGIDTVDEMIETIKGQRVAAIIGVVGLLALLVLAVGHGIVSSPAG 125 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147 L + NV ++ ++++ Y +P E Sbjct: 126 LEQATGADGNVRSLAYLIFSDYVFPFE 152 >gi|257453975|ref|ZP_05619251.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Enhydrobacter aerosaccus SK60] gi|257448640|gb|EEV23607.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Enhydrobacter aerosaccus SK60] Length = 214 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 90/170 (52%), Gaps = 6/170 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++ FYL + +AI++S V+T NP++++ ++I + +G+F LGA F + ++ Sbjct: 2 ITGATIGFYLLAIVAILASLRVITRTNPVHALLNMIVTLLALSGIFFALGAPFAGALEII 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V F+F++MML++ + + ++ S + IV + F + + Sbjct: 62 VYAGAIMVLFVFVVMMLNLGTQ-STLEEESWLSSSAWAVPAGLAFIVGLTLFSLIGMKHG 120 Query: 121 LSRLVFKGNNVE-----NIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 ++ VE IG L+T+Y +EI+GF+LL ++ A L Sbjct: 121 FEGIMPAFIGVEPVTAKMIGAKLFTEYLLLVEIAGFLLLAGLVAAYHLAK 170 >gi|397907|emb|CAA48369.1| NADH dehydrogenase I, subunit nuoJ [Escherichia coli] Length = 184 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E + + + + +++ + + ++ Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQETQWLKPQVWIGPAILSAIMLVVIVYAILG----VNDQ 117 Query: 125 VFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 G + + +G L+ Y +E++ +LL ++ A + R Sbjct: 118 GIDGTPISRKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|163781770|ref|ZP_02176770.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] gi|159882990|gb|EDP76494.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] Length = 177 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 2/164 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +FS AIIS V+T NPIY + L+ A + AG+F GAE V + L++Y A Sbjct: 5 VIFLIFSAWAIISGVGVITFTNPIYVILWLLSALIAVAGIFFTAGAELVGALQLLIYAVA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + VF++F++ + + + + R G L + +L E+ + + S EG+ Sbjct: 65 IAVFYVFVLTAVPWEKAIKKGSHYRMEGVLSLPLVVLLYVEMAIVFFLGITASPEGKFRA 124 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + K N E +G +L+T+Y + E+ +LL+ MIGA+++ + Sbjct: 125 FIEKLGNTEVVGSILFTRYFFAFEVVSLVLLIGMIGAVLIGRKE 168 >gi|193215449|ref|YP_001996648.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroherpeton thalassium ATCC 35110] gi|193088926|gb|ACF14201.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroherpeton thalassium ATCC 35110] Length = 176 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 1/168 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ FF+ F + I + V +NP+ S L+ F GL+L L A+F+A++ ++ Sbjct: 1 MALEEFFFFFFGALVITGTLGTVLSKNPVSSALFLVLNFFALGGLYLSLEAQFIAVVQVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEG 119 VY GA++V FLF IM+L ++ E + + G +F I + I+ F + + Sbjct: 61 VYAGAIMVLFLFTIMLLSLEDESSLIERFDLKKGFAFLISGVFLVEILYIVGFKLTPVKP 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +V+ IGK L T+Y +P EI +LLL++IGA++L R Sbjct: 121 VSRLTPVQIGDVKTIGKALLTEYVFPFEIISIVLLLAIIGAVLLAKRK 168 >gi|320178747|gb|EFW53710.1| NADH-ubiquinone oxidoreductase chain J [Shigella boydii ATCC 9905] Length = 184 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGITLFGPYVLVVELASMLLLAGLVVAFHVGREER 163 >gi|238759970|ref|ZP_04621123.1| NADH-quinone oxidoreductase subunit J [Yersinia aldovae ATCC 35236] gi|238701797|gb|EEP94361.1| NADH-quinone oxidoreductase subunit J [Yersinia aldovae ATCC 35236] Length = 181 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + R GILA L+ + ++ +S Sbjct: 62 AIMVLFVFVVMMLNLGNVEQQERDWLKPSLWIGPGILALVLLSVLIYAISSVSDQGISGE 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 122 MVDA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|242239960|ref|YP_002988141.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech703] gi|242132017|gb|ACS86319.1| NADH dehydrogenase (quinone) [Dickeya dadantii Ech703] Length = 181 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY G Sbjct: 2 EFAFYATAIIAVLATLRVITHTNPVHALLYLIISLLAVAGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V + K G + + + +++ +F G+ + Sbjct: 62 AIMVLFVFVVMMLNLGHSVVDQEKAWLKPGVWIGPGILSLVLLGVIIKGIFRLNGQ--DI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + +R Sbjct: 120 SGGMIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165 >gi|296274494|ref|YP_003657125.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Arcobacter nitrofigilis DSM 7299] gi|296098668|gb|ADG94618.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcobacter nitrofigilis DSM 7299] Length = 190 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FYLFS + I + V N +Y++ SL + + F LL A+F+ ++ +VVY Sbjct: 2 FEIVAFYLFSILTIFMFGITVFTNNALYALSSLAAGMIFISAFFFLLNADFLGIVQIVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAVI + F +M D EV E + G + F G+ A +V + +V + Sbjct: 62 TGAVIALYAFGMMFFDSMSEVKEKIQNPGLV-FLFSGLAALITVVAFLSPIVSNNIISEY 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + N +++G VL+T++ P EI+ +LL++MIG I+L + Sbjct: 121 AIHPEYGNTQDVGVVLFTKFLVPFEIAAVMLLVAMIGGIILAGKK 165 >gi|300931367|ref|ZP_07146698.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 187-1] gi|300460829|gb|EFK24322.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Escherichia coli MS 187-1] Length = 184 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 80/164 (48%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDG 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +G L+ Y +E++ +LL ++ A + R Sbjct: 122 TPII--AKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|50346838|ref|YP_053209.1| NADH dehydrogenase subunit 6 [Nymphaea alba] gi|75275853|sp|Q6EVZ7|NU6C_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|50250383|emb|CAF28649.1| NADH dehydrogenase ND6 subunit [Nymphaea alba] Length = 177 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 8/172 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + I+ VV + NPIYS FSL V + ++ + FVA L++Y Sbjct: 7 IHDILLVSLGSGLIVGGLGVVLLTNPIYSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V LF +M ++ S F ++A + Sbjct: 67 VGAINVLILFAVMFMNGSEYYNYFHFWTVGDGFTSLVCTSIFFSLIATIPNTSWYGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + ++ +NV+ IG L T + P E+ ILL+S++GAI + R Sbjct: 127 TRSNQIIEQDLT-SNVQQIGIHLSTDFYLPFELISIILLVSLVGAIAMARRE 177 >gi|251789022|ref|YP_003003743.1| NADH dehydrogenase (quinone) [Dickeya zeae Ech1591] gi|247537643|gb|ACT06264.1| NADH dehydrogenase (quinone) [Dickeya zeae Ech1591] Length = 183 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 91/185 (49%), Gaps = 7/185 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY G Sbjct: 2 EFAFYATAIIAVLATLRVITHTNPVHALLYLIVSLLAVAGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSR 123 A++V F+F++MML++ V E K + G+L+ L+ ++ + ++ Sbjct: 62 AIMVLFVFVVMMLNLGNSVDEQEKLWLKPTVWLGPGVLSLVLLAIIVKGIISVTDQNIAG 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD---IKRQDISKQL 180 + + +G L+ Y +E++ +LL ++ A + +R K QD K++ Sbjct: 122 NMIDA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRGELIAKDQDADKKI 178 Query: 181 ESNPD 185 Sbjct: 179 TEERA 183 >gi|317492615|ref|ZP_07951042.1| NADH-ubiquinone/plastoquinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919365|gb|EFV40697.1| NADH-ubiquinone/plastoquinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 192 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V++ NP++++ LI + + A +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVISHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E + + L + +++ + + S + + Sbjct: 62 AIMVLFVFVVMMLNLGNSVVEQERAWLKPSLWIGPSLLSLILLAVLVYAIMSVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E+ +LL ++ A + H++ Sbjct: 120 SGDMIDAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHKQG 165 >gi|88607226|ref|YP_505038.1| NADH dehydrogenase I, J subunit [Anaplasma phagocytophilum HZ] gi|88598289|gb|ABD43759.1| NADH dehydrogenase I, J subunit [Anaplasma phagocytophilum HZ] Length = 201 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 70/203 (34%), Positives = 114/203 (56%), Gaps = 12/203 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F+ F+ M + S+ VV NP+Y+V SLI F ++ LF+LLGAE VAM+ +VVY Sbjct: 1 MVGFLFFCFAGMVVFSAVAVVISSNPVYAVLSLILTFFISSVLFILLGAELVAMLLVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V FLF++MMLD+D + GF+ + I + A + + + +F + Sbjct: 61 VGAVAVLFLFVVMMLDMDF----VKSSHGFVRYYPICVALATALFGCATYAIFHTKAAFI 116 Query: 123 RLVFKG-----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-DIKRQDI 176 R + + NV IG +YT+Y Y ++SG +LL++ IGA+VL +R + ++Q++ Sbjct: 117 RGIGEAGASAMGNVFLIGSQMYTKYFYAFQMSGILLLVASIGALVLTVRSKAVKSRKQNV 176 Query: 177 SKQLESNPDNSIVMVKVKSGKGI 199 Q++ + + + KGI Sbjct: 177 YAQVDRSSK--VELCSPAVCKGI 197 >gi|229076507|ref|ZP_04209469.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock4-18] gi|228706693|gb|EEL58904.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock4-18] Length = 153 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 81/149 (54%), Gaps = 1/149 (0%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 ++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F IM+ + Sbjct: 1 MLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGIMLTKHNA 60 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141 E R ++ FF + ++ A N + FS E L N IG +LY++ Sbjct: 61 ENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQIGTLLYSK 119 Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRD 170 Y P E++ ILL++++GAI+L + ++ Sbjct: 120 YIIPFELTSVILLVALVGAIILAKKDEKE 148 >gi|325610509|gb|ADZ36457.1| NADH dehydrogenase subunit 6 [Schima khasiana] Length = 176 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + F+ I++S V+ NPIYS FSL FV + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGFVLILASLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V +F +M ++ + S F+ ++ L + Sbjct: 67 VGAINVLIIFAVMFMNGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWA 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 127 TKSNQILEQDL-ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|296040753|gb|ADG85344.1| NADH dehydrogenase subunit 6 [Silene conica] Length = 157 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 11/157 (7%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A++S +VV +NP++SV I F N AGL LLLG +F AMI LVVY+GA+ V FLF+ Sbjct: 1 LALVSGLMVVRAKNPVHSVLFFILVFCNTAGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAA---ELIVCASNFMVFSAEGELSRLVF---- 126 +MM I I R S IG++ I+ N + +G+ + L + Sbjct: 61 VMMFHIQIAEIHEEVLRYLPVSGLIGLIFWWEMFFILDNENIPLLPTQGQTNSLTYMVYA 120 Query: 127 ----KGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 N+E +G +LYT Y +S ILL++MIG Sbjct: 121 GKVRSWTNLETLGNLLYTHYFVWFLVSSLILLVAMIG 157 >gi|50121943|ref|YP_051110.1| NADH dehydrogenase subunit J [Pectobacterium atrosepticum SCRI1043] gi|49612469|emb|CAG75919.1| NADH-quinone oxidoreductase chain J [Pectobacterium atrosepticum SCRI1043] Length = 187 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 91/168 (54%), Gaps = 6/168 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY +AI+++ V+T NP++++ ++ + + AG+F LGA F ++++VY G Sbjct: 2 EFAFYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELS 122 A++V F+F++MML++ V E +++ S +IG IL+ L+V N ++ + ++ Sbjct: 62 AIMVLFVFVVMMLNLGSSV-EEQERNWLKPSVWIGPSILSLALLVIVVNAILSLKDQGIT 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + +R Sbjct: 121 GTPVEA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165 >gi|255318324|ref|ZP_05359559.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acinetobacter radioresistens SK82] gi|262379068|ref|ZP_06072224.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter radioresistens SH164] gi|255304636|gb|EET83818.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acinetobacter radioresistens SK82] gi|262298525|gb|EEY86438.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter radioresistens SH164] Length = 175 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 91/161 (56%), Gaps = 1/161 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AIIS+ VVT NP++++ SLI + + AG+FL++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIISTIRVVTNTNPVHALLSLIVSLLAVAGIFLIVGAPFAGALEVIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SRLVF 126 V F+F++MML++ + E +K ++ L + L+ +M+ + L Sbjct: 65 VLFVFVVMMLNLGQQTMEQERKWLNSSAWAYPALMSFLMGLILVWMLGGEYTTAGATLGR 124 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + +G+ L+T Y +E++ +LL S++ A + R Sbjct: 125 EIIGPKAVGQSLFTHYLLLVEVAAMLLLASLVAAFHIGRRE 165 >gi|229099727|ref|ZP_04230653.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-29] gi|228683697|gb|EEL37649.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus cereus Rock3-29] Length = 153 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 81/149 (54%), Gaps = 1/149 (0%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 ++ + ++ + +L+ F++ AGL+ LL AEF+ + +++Y GA+ + +F IM+ + Sbjct: 1 MLNLTKVMHMMLALVLTFLSIAGLYFLLSAEFIGVAQILLYSGAITIIMIFGIMLTKHNA 60 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141 E R ++ FF + ++ A N + FS E L N IG +LY++ Sbjct: 61 ENESRLTLRKWI-IFFAVVAFGAVMYFAVNSIDFSNESTQGSLPLHEKNTLQIGTLLYSE 119 Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHRRD 170 Y P E++ ILL++++GAI+L + ++ Sbjct: 120 YIIPFELTSVILLVALVGAIILAKKDEKE 148 >gi|326572765|gb|EGE22751.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC7] Length = 210 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 92/161 (57%), Gaps = 5/161 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +AI +S VVT N ++++ S+I + + AG+F +LGA F ++ ++VY GA++ Sbjct: 17 FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E + +L + + +++ + + F G + + Sbjct: 77 VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133 Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + +++G L+T Y +E++ F+LL +++ A L + Sbjct: 134 SDTISAKDVGIRLFTGYVLLVEVAAFLLLGALVAAYHLGKK 174 >gi|163847541|ref|YP_001635585.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus aurantiacus J-10-fl] gi|222525391|ref|YP_002569862.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus sp. Y-400-fl] gi|163668830|gb|ABY35196.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus aurantiacus J-10-fl] gi|222449270|gb|ACM53536.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus sp. Y-400-fl] Length = 216 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 2/174 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ + F + + ++S+ +VV+VRN I++ LI F L++LL AEF+A++ +++ Sbjct: 3 IVVQIVFGVIALFILVSAAMVVSVRNVIHAALWLIACFFGVGALYMLLEAEFLAVVQVLI 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAEG 119 YVGAV V LF IM+ + + I +L A + N Sbjct: 63 YVGAVSVLILFAIMLTRQITGEGIRQLTTRWPVVLAIAVLLFATVMAPTLINQQWNVPPA 122 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 +G+ ++ ++ G +L +++IGAIV+ R ++ Sbjct: 123 PPIGTPEPIAGPAELGRGFVNEFLLQFQVVGVLLTVALIGAIVIAYEERARRRK 176 >gi|269955286|ref|YP_003325075.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Xylanimonas cellulosilytica DSM 15894] gi|269303967|gb|ACZ29517.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Xylanimonas cellulosilytica DSM 15894] Length = 301 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 89/196 (45%), Gaps = 3/196 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F + + + +I++ ++ + +++ ++F ++ A L++ A F+ ++ +VVY Sbjct: 7 EAALFGVLAPLMVIAALGLLFAKRAVHAAMCVVFVMISLAILYVANEAPFLGIVQVVVYT 66 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF++M++ +D + RG + +++ Sbjct: 67 GAVMMLFLFVLMLVGVDAADSLTETIRGQRWIGVLFGAGLLVVLLTVLARTDLPPAIGLD 126 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR---RDIKRQDISKQL 180 L N + +L+ Y +E+ G +L+ + + +VL R R R +R ++++ Sbjct: 127 LANAQTNPTGLAAILFGDYVIGMEVIGVLLVTAALAGLVLTHRRRLGPRRSQRTMAAERV 186 Query: 181 ESNPDNSIVMVKVKSG 196 PD ++ G Sbjct: 187 AGLPDGQVLTPLPAPG 202 >gi|148243378|ref|YP_001228535.1| NADH dehydrogenase subunit J [Synechococcus sp. RCC307] gi|147851688|emb|CAK29182.1| NAD(P)H-quinone oxidoreductase chain 6 [Synechococcus sp. RCC307] Length = 199 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 8/168 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + Q + F + + ++ + VV + N +Y+ F L F++ AGL+L+L A F+A +++ Sbjct: 7 ITQLIVFGVLALAVVVGALGVVMLPNIVYAAFLLGGVFLSVAGLYLMLNASFIAAAQILI 66 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEP---RKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 YVGAV V LF IM+++ + +R IG+ A L V S + Sbjct: 67 YVGAVNVLILFAIMLVNKKEAMGASPGVGLRRVLSTGVCIGLFALLLRVAFS-----TPW 121 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + V +G+ ++ Y P E++ +LL++MIGAIVL R Sbjct: 122 ATPGPAAIGEDAVIRLGEHFFSDYLLPFELASVLLLMAMIGAIVLARR 169 >gi|261820800|ref|YP_003258906.1| NADH dehydrogenase subunit J [Pectobacterium wasabiae WPP163] gi|261604813|gb|ACX87299.1| NADH dehydrogenase (quinone) [Pectobacterium wasabiae WPP163] Length = 186 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 91/168 (54%), Gaps = 6/168 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY +AI+++ V+T NP++++ ++ + + AG+F LGA F ++++VY G Sbjct: 2 EFAFYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELS 122 A++V F+F++MML++ V E +++ S +IG IL+ L+V N ++ E ++ Sbjct: 62 AIMVLFVFVVMMLNLGNSV-EEQERNWLKPSVWIGPSILSLALLVIVVNAILSLKEQGIT 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + +R Sbjct: 121 GTPVEA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165 >gi|238751240|ref|ZP_04612734.1| NADH-quinone oxidoreductase subunit J [Yersinia rohdei ATCC 43380] gi|238710514|gb|EEQ02738.1| NADH-quinone oxidoreductase subunit J [Yersinia rohdei ATCC 43380] Length = 181 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 88/166 (53%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E +++ S +IG L++ + S+ + S + Sbjct: 62 AIMVLFVFVVMMLNLGK--VEEQEREWLKPSVWIGPGLLALVLLSVLIYAISSVTD-SGI 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|309322498|ref|YP_003934011.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus grandis] gi|308223332|gb|ADO23640.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus grandis] Length = 176 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ S VV + NPIYS FSL V + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF +M ++ + +G ++ ++V ++ ++ + Sbjct: 67 VGAINVLILFAVMFMNGSEYYKDLNL--WTVGDGITSLVCTSILVSLMTTILDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 N + IG L T + P E+ ILL+++IGAI + + Sbjct: 125 WTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|224437350|ref|ZP_03658322.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818] gi|313143813|ref|ZP_07806006.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818] gi|313128844|gb|EFR46461.1| NADH dehydrogenase subunit J [Helicobacter cinaedi CCUG 18818] Length = 173 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 4/172 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +S+ FYLFS + I+S +VV+ IY++ +L + +G+F LGAEF+ + +VVY Sbjct: 2 FESISFYLFSTLCIVSFLIVVSSSRIIYAMTALAGGMIFISGIFFTLGAEFIGAVQIVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 G+VI + F +M D +V E RK + +GI +I+ + E Sbjct: 62 GGSVIALYAFAMMFFDTSKDVIESRKNEWVVSVLCVGICVVLVIMFGLPLLGNQLETIAD 121 Query: 123 RL----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + +N++ IG VL+TQY P E++ +LL++M+ IVL ++ + Sbjct: 122 SANLLDFAEMSNIQKIGYVLFTQYLIPFELAALMLLVAMVAGIVLSVKKEQK 173 >gi|156933130|ref|YP_001437046.1| NADH dehydrogenase subunit J [Cronobacter sakazakii ATCC BAA-894] gi|156531384|gb|ABU76210.1| hypothetical protein ESA_00940 [Cronobacter sakazakii ATCC BAA-894] Length = 187 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 84/164 (51%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY G Sbjct: 2 EFAFYICALVAVLTTARVITHSNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGDSVVRQEREWLKPQIWIGPGILSAVLLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +GK L+ Y +E++ +LL ++ A L + Sbjct: 120 EGNPISAKAVGKDLFQTYVLAVELASMLLLAGLVVAFHLGREEK 163 >gi|238794599|ref|ZP_04638206.1| NADH-quinone oxidoreductase subunit J [Yersinia intermedia ATCC 29909] gi|238726085|gb|EEQ17632.1| NADH-quinone oxidoreductase subunit J [Yersinia intermedia ATCC 29909] Length = 181 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 88/166 (53%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E +++ S +IG L++ + S+ + S + Sbjct: 62 AIMVLFVFVVMMLNLGN--VEQQERDWLKPSLWIGPGLLALVLLSVLIYAISSITD-SGI 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|253729607|ref|YP_003029792.1| NdhG [Bambusa oldhamii] gi|255961434|ref|YP_003097629.1| NADH-plastoquinone oxidoreductase subunit 6 [Dendrocalamus latiflorus] gi|246367117|gb|ACS94728.1| NdhG [Bambusa oldhamii] gi|255040311|gb|ACT99971.1| NADH-plastoquinone oxidoreductase subunit 6 [Dendrocalamus latiflorus] Length = 176 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 10/162 (6%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F ++ VV + NPIYS FSL + + ++LL + FVA+ L++YVGA+ V +F Sbjct: 17 FFLLLGGIGVVLLTNPIYSAFSLGLVLICISLFYILLNSYFVAVAQLLIYVGAINVLIIF 76 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---- 128 +M ID K +G F ++ ++ + ++ + Sbjct: 77 AVMF--IDGSEWSKNKNYWTIGDGFTSLVCITILFSLMTTIPDTSWYGILWTTRSNQIVE 134 Query: 129 ----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 NNV+ IG L T + P E+ ILL+S+IGAI + + Sbjct: 135 QGLINNVQQIGIHLATDFYLPFELISIILLVSLIGAITMARQ 176 >gi|133900498|gb|ABO41415.1| NADH dehydrogenase subunit 6 [Marathrum cf. oxycarpum Cachoeirc 9/1996] Length = 179 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 +V +NP++SV I F + +GL LLLG +F AMI VV++GA+ V FLF++MM Sbjct: 1 GLMVARAKNPVHSVLFFILVFCDTSGLLLLLGLDFSAMIFSVVHIGAIAVLFLFVVMMFH 60 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----------MVFSAEGELSRLVFK 127 I I R S IG++ + F + + V Sbjct: 61 IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILEFESIPLLPTQKQTAYLKYTVYAGKVRP 120 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 N+E +G +LYT Y L +S ILL++MIGAIVL + + +KRQD+ ++ + Sbjct: 121 WTNLETLGNLLYTYYFLWLLLSSLILLVAMIGAIVLTMHRTKKVKRQDLFRRNAIDF 177 >gi|91200371|emb|CAJ73417.1| strongly similar to NADH dehydrogenase I chain J [Candidatus Kuenenia stuttgartiensis] Length = 189 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 93/168 (55%), Gaps = 2/168 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+ S +A++S+ +V+T +N ++++ LI + ++ + +F +LGA F+A + +++Y GA Sbjct: 8 ITFYIASIVAVVSTLMVITRKNAVHALLYLIVSLLSVSIIFFILGAPFMAALEVIIYAGA 67 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F+F+IMML++ E A + + + ++ +++ ++ G+ V Sbjct: 68 IMVLFIFVIMMLNLGSEAARMENQLLNPKMWIVPVILTLILIIEFIIVLIKINGQEYNSV 127 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + +G L+ Y +E++ +LL ++GA L ++ + R Sbjct: 128 IISP--KQVGISLFGTYLLGVELAAMLLLAGIVGAYHLGKEKKKILHR 173 >gi|293395178|ref|ZP_06639464.1| NADH dehydrogenase I subunit J [Serratia odorifera DSM 4582] gi|291422355|gb|EFE95598.1| NADH dehydrogenase I subunit J [Serratia odorifera DSM 4582] Length = 186 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 86/166 (51%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FYL +AI+++ V++ NP++++ LI + + + +F LGA F A + ++VY G Sbjct: 2 EIAFYLAGLIAILATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V + ++ + L + +++ + S + + Sbjct: 62 AIMVLFVFVVMMLNLGNAVQQQEREWLKPSLWIGPGLLSLILLVVLIVAIRSVSDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 120 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 165 >gi|227112319|ref|ZP_03825975.1| NADH dehydrogenase subunit J [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227326158|ref|ZP_03830182.1| NADH dehydrogenase subunit J [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 186 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 91/168 (54%), Gaps = 6/168 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY +AI+++ V+T NP++++ ++ + + AG+F LGA F ++++VY G Sbjct: 2 EFAFYTTGLIAILATLRVITHTNPVHALLYMVTSLMAIAGVFFSLGANFAGALSIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGELS 122 A++V F+F++MML++ V E +++ S +IG IL+ L+V N ++ E ++ Sbjct: 62 AIMVLFVFVVMMLNLGNSV-EEQERNWLKPSVWIGPSILSLALLVIVVNAILSLKEQGIT 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + +R Sbjct: 121 GTPVEA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREDKRG 165 >gi|323260324|gb|EGA43943.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 284 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 82/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ L+ + + +G+F LGA F + ++VY G Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAIMLAVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A + R Sbjct: 120 DGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 >gi|332162381|ref|YP_004298958.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666611|gb|ADZ43255.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860326|emb|CBX70639.1| NADH-quinone oxidoreductase subunit J [Yersinia enterocolitica W22703] Length = 181 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 87/166 (52%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E +++ S +IG L++ S+ + S + Sbjct: 62 AIMVLFVFVVMMLNLGN--VEQQERDWLKPSLWIGPGLLALVLLTVLIYAISSVTD-SGI 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|326569472|gb|EGE19532.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC8] Length = 210 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 92/161 (57%), Gaps = 5/161 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +AI +S VVT N ++++ S+I + + AG+F +LGA F ++ ++VY GA++ Sbjct: 17 FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E + +L + + +++ + + F G + + Sbjct: 77 VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133 Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + +++G L+T Y +E++ F+LL +++ A L + Sbjct: 134 SDTISAKDVGIRLFTGYVLLVEVAAFLLLGALVAAYHLGKK 174 >gi|326577457|gb|EGE27341.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis O35E] Length = 210 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 92/161 (57%), Gaps = 5/161 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +AI +S VVT N ++++ S+I + + AG+F +LGA F ++ ++VY GA++ Sbjct: 17 FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E + +L + + +++ + + F G + + Sbjct: 77 VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAMLIGFIGYGTDQSIQLQ 133 Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + +++G L+T Y +E++ F+LL +++ A L + Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHLGKK 174 >gi|238788646|ref|ZP_04632438.1| NADH-quinone oxidoreductase subunit J [Yersinia frederiksenii ATCC 33641] gi|238723241|gb|EEQ14889.1| NADH-quinone oxidoreductase subunit J [Yersinia frederiksenii ATCC 33641] Length = 181 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 88/166 (53%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E +++ S +IG L++ + S+ + S + Sbjct: 62 AIMVLFVFVVMMLNLGN--VEQQERDWLKPSLWIGPGLLALVLLSVLIYAISSVTD-SGI 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|296040757|gb|ADG85346.1| NADH dehydrogenase subunit 6 [Silene vulgaris] Length = 157 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 80/157 (50%), Gaps = 11/157 (7%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA+ V FLF+ Sbjct: 1 LALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL-------- 124 +MM I I R S IG I E+ N + + + Sbjct: 61 VMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYA 120 Query: 125 --VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 V N+E +G +LYT Y +S ILL++MIG Sbjct: 121 GKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIG 157 >gi|229007601|ref|ZP_04165196.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides Rock1-4] gi|228753739|gb|EEM03182.1| NADH dehydrogenase (Ubiquinone), J subunit [Bacillus mycoides Rock1-4] Length = 146 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 1/142 (0%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 ++ + +L+F F++ AGL+ LL AEFV + +++Y GA+ + +F IM+ D E Sbjct: 1 MHMMLALVFTFLSIAGLYFLLLAEFVGVAQILIYSGAITIIMIFGIMLTKHDAENESSFS 60 Query: 89 KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 R +L FF ++ ++ A N + F+ + N IG +LY++Y P E+ Sbjct: 61 FRKWL-IFFAVVVFGGVMYFAVNNIDFTNRSVQGSVPLHEQNTLQIGTLLYSKYVIPFEL 119 Query: 149 SGFILLLSMIGAIVLMLRHRRD 170 + ILL++++GAIVL + ++ Sbjct: 120 TSVILLVALVGAIVLAKKDEKE 141 >gi|325610517|gb|ADZ36464.1| NADH dehydrogenase subunit 6 [Gordonia lasianthus] Length = 176 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + F+ I++S V+ NPIYS FSL FV + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGFVLILASLGVILFPNPIYSAFSLGLVFVCISFFYILSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V +F +M ++ + S F+ ++ L + Sbjct: 67 VGAINVLIIFAVMFMNGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWA 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 127 TKSNQILEQDL-ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|269218346|ref|ZP_06162200.1| NADH dehydrogenase [Actinomyces sp. oral taxon 848 str. F0332] gi|269212205|gb|EEZ78545.1| NADH dehydrogenase [Actinomyces sp. oral taxon 848 str. F0332] Length = 321 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 81/165 (49%), Gaps = 1/165 (0%) Query: 4 QSLFFYLFSFMAI-ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ F + + + + ++ F ++ R +YS +I V A L+ L A F+ ++ + VY Sbjct: 13 ETILFGVVAVVMVTLTVFGLLVTRRAVYSAVCVIADMVCLAVLYTALEAPFMGVVQIAVY 72 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+++ FLF++MM+ +D + RG +G L I + + Sbjct: 73 TGAILMMFLFVLMMIGVDAADSTYETLRGQRVMAALGALGFAAIAGGAVMDARTPGPVGL 132 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + N I K ++T +A +E++G +L+++ +GA+ L R Sbjct: 133 AKANEETNPTAIAKSIFTNHALTMELTGALLIVAAVGAMTLTHRQ 177 >gi|123441684|ref|YP_001005668.1| NADH dehydrogenase subunit J [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088645|emb|CAL11442.1| NADH dehydrogenase I chain J [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606460|emb|CBY27958.1| NADH-ubiquinone oxidoreductase chain J [Yersinia enterocolitica subsp. palearctica Y11] Length = 181 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 87/166 (52%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E +++ S +IG L++ S+ + S + Sbjct: 62 AIMVLFVFVVMMLNLGN--VEQQERDWLKPSLWIGPGLLALVLLTVLIYAISSVTD-SGI 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|115375207|ref|ZP_01462473.1| NADH-quinone oxidoreductase chain 10 [Stigmatella aurantiaca DW4/3-1] gi|310818917|ref|YP_003951275.1| NADH dehydrogenase I subunit j [Stigmatella aurantiaca DW4/3-1] gi|115367769|gb|EAU66738.1| NADH-quinone oxidoreductase chain 10 [Stigmatella aurantiaca DW4/3-1] gi|309391989|gb|ADO69448.1| NADH dehydrogenase I, subunit J [Stigmatella aurantiaca DW4/3-1] Length = 167 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 95/169 (56%), Gaps = 5/169 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F F+F+ + S+ +V+ ++PI+S +L+ F AG+++LL A +A++ ++ Sbjct: 1 MNIEQALFGAFAFLTLFSAAVVIFAKSPIHSAMALVSTFFFLAGIYVLLWAHTLAVMQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 VY GA++V FLF+IM+L++ E PR R G+ +G+ AA I + S Sbjct: 61 VYAGAIMVLFLFVIMLLNLGEEPPGPRLTLTRIIGGATALGLFAALAITLER---LPSTV 117 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +L +E IGK +++ + +P E +LL+SM+G++V+ Sbjct: 118 ADLGAQAQTFGTLETIGKAIFSSWLFPFEAVSLLLLVSMVGSVVVAKSR 166 >gi|238798412|ref|ZP_04641893.1| NADH-quinone oxidoreductase subunit J [Yersinia mollaretii ATCC 43969] gi|238717726|gb|EEQ09561.1| NADH-quinone oxidoreductase subunit J [Yersinia mollaretii ATCC 43969] Length = 181 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 88/166 (53%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E +++ + +IG L++ + S+ + S + Sbjct: 62 AIMVLFVFVVMMLNLGN--VEQQERDWLKPTLWIGPGLLALVLLSVLIYAISSVTD-SGI 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|322831992|ref|YP_004212019.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rahnella sp. Y9602] gi|321167193|gb|ADW72892.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rahnella sp. Y9602] Length = 186 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 82/166 (49%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + A +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVLATLRVITHTNPVHALLYLIVSLLAIAAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + R +L+ L+V ++ + + Sbjct: 62 AIMVLFVFVVMMLNLGNVQEQERAWLKPATWIGPSVLSVILLVVMIMSILGLHDHGIKGD 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 122 MVDA---KAVGIALFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|296112940|ref|YP_003626878.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis RH4] gi|295920634|gb|ADG60985.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis RH4] gi|326561164|gb|EGE11529.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 7169] gi|326562848|gb|EGE13136.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 103P14B1] gi|326567648|gb|EGE17756.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 12P80B1] gi|326574015|gb|EGE23964.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis CO72] gi|326577017|gb|EGE26912.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 101P30B1] Length = 210 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 92/161 (57%), Gaps = 5/161 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +AI +S VVT N ++++ S+I + + AG+F +LGA F ++ ++VY GA++ Sbjct: 17 FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E + +L + + +++ + + F G + + Sbjct: 77 VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133 Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + +++G L+T Y +E++ F+LL +++ A L + Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHLGKK 174 >gi|108802695|ref|YP_636352.1| NADH dehydrogenase subunit 6 [Eucalyptus globulus subsp. globulus] gi|122219159|sp|Q49KU5|NU6C_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|60460861|gb|AAX21081.1| NADH-plastoquinone oxidoreductase subunit 6 [Eucalyptus globulus subsp. globulus] Length = 176 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ S VV + NPIYS FSL V + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + LF +M ++ + +G ++ ++V ++ ++ + Sbjct: 67 VGAINILILFAVMFMNGSEYYKDLNL--WTVGDGITSLVCTSILVSLMTTILDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 N + IG L T + P E+ ILL+++IGAI + + Sbjct: 125 WTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|326561575|gb|EGE11916.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis 46P47B1] gi|326567947|gb|EGE18044.1| NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis BC1] Length = 210 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 92/161 (57%), Gaps = 5/161 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY+ S +AI +S VVT N ++++ S+I + + AG+F +LGA F ++ ++VY GA++ Sbjct: 17 FYVLSLVAIWASLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAIL 76 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ + E + +L + + +++ + + F G + + Sbjct: 77 VLFVFVIMMLNLGTDTTEEKT---WLTANAWAMPVCLMMIVGAVLIGFIGYGTDQSIQLQ 133 Query: 128 GNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + +++G L+T Y +E++ F+LL +++ A L + Sbjct: 134 SDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHLGKK 174 >gi|313681403|ref|YP_004059141.1| NADH dehydrogenase subunit j [Sulfuricurvum kujiense DSM 16994] gi|313154263|gb|ADR32941.1| NADH dehydrogenase subunit J [Sulfuricurvum kujiense DSM 16994] Length = 195 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 89/166 (53%), Gaps = 3/166 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FYLF+ + I+ + V +Y++ ++ + + F +LGA+F+ I ++VY Sbjct: 2 FEAIAFYLFAALTIVMFTITVMTSQALYAITAMAAGMIFISAFFFILGADFLGAIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-L 121 GAV+ + F +M D +V E R + F +G+LAA ++V + S + L Sbjct: 62 TGAVMALYAFGMMFFDTTRDVVEKRTNPQIV--FVLGVLAAVMVVAIFVAPIVSNNIQAL 119 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + N + +G VL+T+Y P E++ +LL++MIG I+L + Sbjct: 120 YPIQENIGNSQAVGMVLFTKYLVPFEVAAVMLLVAMIGGIILAGKK 165 >gi|238784992|ref|ZP_04628990.1| NADH-quinone oxidoreductase subunit J [Yersinia bercovieri ATCC 43970] gi|238714108|gb|EEQ06122.1| NADH-quinone oxidoreductase subunit J [Yersinia bercovieri ATCC 43970] Length = 181 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 88/166 (53%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E +++ + +IG L++ + S+ + S + Sbjct: 62 AIMVLFVFVVMMLNLGN--VEQQERDWLKPTLWIGPGLLALVLLSVLIYAISSVTD-SGI 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|200004020|ref|YP_002221355.1| NADH dehydrogenase subunit 6 [Blastocystis sp. DMP/02-328] gi|156617367|gb|ABU87587.1| NADH dehydrogenase subunit 6 [Blastocystis sp. BT-1] gi|156617370|gb|ABU87589.1| NADH dehydrogenase subunit 6 [Blastocystis sp. DMP/02-328] Length = 201 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 105/200 (52%), Gaps = 11/200 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FF F+ + IIS F+ ++V N +Y+V LI AF + + LL +++A++ +++Y Sbjct: 1 MSNFFFNFFASILIISVFMTISVNNAVYAVLFLILAFFSTMCILFLLNIDYLALLFILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF------- 115 VGA+ + FLF++MML I I K F+ ++ ++ +F Sbjct: 61 VGAITILFLFVVMMLKIKINDKNTTKFLSFINIIISCLIIYNVLCNVQILNIFLPTTTTA 120 Query: 116 ---SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 ++ +N++ +G+VL+T Y + ++GF+LL+ MI AI+L R I+ Sbjct: 121 LETLTYQNWFSKLYYVDNIKMLGQVLFTTYYFYFILAGFVLLVGMISAILLSKESNRTIR 180 Query: 173 R-QDISKQLESNPDNSIVMV 191 R Q + +QL N++ +V Sbjct: 181 RYQLVYQQLSREVSNAVFLV 200 >gi|116619260|ref|YP_821416.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Candidatus Solibacter usitatus Ellin6076] gi|116222422|gb|ABJ81131.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Solibacter usitatus Ellin6076] Length = 164 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 3/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F F+ +A++ + VV +PI S SL+ + A L+LLLGAEF+A ++VY Sbjct: 1 MDVILFLTFAVIAVVCAINVVVQTHPISSALSLVGVMGSLAILYLLLGAEFIAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IM+L+ E + R I L +F + + Sbjct: 61 AGAIMVLFVFVIMLLNAGAETTKGRSYLIPGAPLLIVFLGLVAFFVQR---IFPSATMVR 117 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 F G +IG L+T Y P E++ ++L++++GAIVL + Sbjct: 118 FGGFTGGGPRDIGNALFTTYLLPFEVTSLLILIAIVGAIVLARKE 162 >gi|15606522|ref|NP_213902.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5] gi|2983740|gb|AAC07301.1| NADH dehydrogenase I chain J [Aquifex aeolicus VF5] Length = 162 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L F++ IIS+ V +NPI+ + + + + AGLFL LGAE +A + L++Y Sbjct: 1 MEWLIFFILGAWLIISALGTVLAKNPIHVMLFFLSSLLAMAGLFLSLGAELLAGLQLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 A++VF++ I + + R + + ++ ++MV + Sbjct: 61 AVAIVVFYVLAITTIPWE---KIKRFEGVYKTEILTASPILLVLFLVMSYMVIKGKFAEP 117 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V K +NVE +G+ L+T Y +P E++ ILL++M+GAI+L + Sbjct: 118 SGVVK-DNVEAVGRTLFTSYLFPFEVASVILLVAMVGAILLARKE 161 >gi|290489844|gb|ADD31329.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Aucuba japonica] Length = 175 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 10/171 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ + VV + NPIYS FSL V + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLILGALGVVLLPNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M ++ + +G ++ + V + ++ + Sbjct: 67 VGAINVLIIFAVMFMNGSEYYKDFHL--WTIGDGVTSMVCTSIFVSLMTTIPDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 +N + IG L T + P E+ ILL+++IGAI + Sbjct: 125 WTTRSNQIVEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVAR 175 >gi|121720667|ref|YP_001001587.1| NADH-plastoquinone oxidoreductase subunit 6 [Nuphar advena] gi|221272334|sp|A1XG08|NU6C_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|84682258|gb|ABC60512.1| NADH-plastoquinone oxidoreductase subunit 6 [Nuphar advena] Length = 177 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 10/173 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + I+ VV + NPIYS FS V + ++ + FVA L++Y Sbjct: 7 IHDILLVSLGSGLIVGGLGVVLLTNPIYSAFSSGLVLVCISLFYIPSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF +M ++ +G F ++ + + ++ + Sbjct: 67 VGAINVLILFAVMFMNGSEYYNSFHF--WTIGDGFTSVVCTSIFFSLIATIPNTSWYGII 124 Query: 123 RLVFK--------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +NV+ IG L T + P E+ ILL+S++GAI + R Sbjct: 125 WTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFELISIILLVSLVGAIAMARRE 177 >gi|332883535|gb|EGK03818.1| hypothetical protein HMPREF9456_01885 [Dysgonomonas mossii DSM 22836] Length = 167 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 90/167 (53%), Gaps = 1/167 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ FY+ + + + + L V +NPI+S +I F + +G FLLL A F+++I +VVY Sbjct: 1 MITIIFYILATITLGTGLLTVLSKNPIHSAVYMIICFFSISGHFLLLNALFLSVINIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V LF +M++++ E EP+KK + I +++ A+ Sbjct: 61 AGAIMVLLLFTLMLMNL-SESHEPKKKVISRVAATISSCLMGIVLLAALLKATPVIETYK 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +V IG+VL +Y P E + +L+ +MIGA+++ + ++ Sbjct: 120 AEGLDYQSVNIIGQVLLDEYLVPFEFAAILLITAMIGAVLISKKEKK 166 >gi|296040755|gb|ADG85345.1| NADH dehydrogenase subunit 6 [Silene paradoxa] Length = 157 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 11/157 (7%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A++S +VV +NP++SV I F N +GL LLLG +F AMI LVVY+GA+ V FLF+ Sbjct: 1 LALVSGLMVVRAKNPVHSVLFFILVFCNTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFV 60 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILA-AELIVCASNFMVFSAEGELSRL-------- 124 +MM I I R S IG++ E+ N + + Sbjct: 61 VMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVYA 120 Query: 125 --VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 V N+E +G +LYT Y +S ILL++MIG Sbjct: 121 GKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIG 157 >gi|238763934|ref|ZP_04624891.1| NADH-quinone oxidoreductase subunit J [Yersinia kristensenii ATCC 33638] gi|238697902|gb|EEP90662.1| NADH-quinone oxidoreductase subunit J [Yersinia kristensenii ATCC 33638] Length = 183 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 86/166 (51%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E +++ S +IG L++ + S+ + Sbjct: 62 AIMVLFVFVVMMLNLGN--VEQQERDWLKPSLWIGPGLLALVLLSVLIYAISSLTH-QGI 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 119 TGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|294637171|ref|ZP_06715479.1| NADH-quinone oxidoreductase, J subunit [Edwardsiella tarda ATCC 23685] gi|291089635|gb|EFE22196.1| NADH-quinone oxidoreductase, J subunit [Edwardsiella tarda ATCC 23685] Length = 190 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + A +F LGA F + ++VY G Sbjct: 2 EFAFYVAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E + G + + L++ + + + +G + Sbjct: 62 AIMVLFVFVVMMLNLGNSVVEQERAWLRPGVWIGPSVLTLLLLLVVLYAISTLQG--GAI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E+ +LL ++ A + H + Sbjct: 120 SGQVVDAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHHQG 165 >gi|157371537|ref|YP_001479526.1| NADH dehydrogenase subunit J [Serratia proteamaculans 568] gi|157323301|gb|ABV42398.1| NADH dehydrogenase (quinone) [Serratia proteamaculans 568] Length = 186 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 88/167 (52%), Gaps = 4/167 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FYL F+A+I++ V++ NP++++ LI + + + +F LGA F A + ++VY G Sbjct: 2 EIAFYLAGFIAVIATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSR 123 A++V F+F++MML++ V + + + GIL+ L+V + ++ +S Sbjct: 62 AIMVLFVFVVMMLNLGNAVQQQERDWLKPSVWIGPGILSLALLVVLIVAIRSVSDQGISG 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 122 EMVDA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 165 >gi|255691143|ref|ZP_05414818.1| NADH dehydrogenase I, subunit 6 [Bacteroides finegoldii DSM 17565] gi|260623236|gb|EEX46107.1| NADH dehydrogenase I, subunit 6 [Bacteroides finegoldii DSM 17565] Length = 170 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 7/170 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V ++F I++ + + AE K+ FL F I +I+ + F + Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAERLKRSRFLAGLFTMIAGLAIILFITLKHNFM---QT 120 Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 + L + N+ IG L + Y P E +LL +IG I++ + Sbjct: 121 ANLAPQEINIHTIGHALLSSDKYGYVLPFEAVSILLLACIIGGIMIARKR 170 >gi|270262806|ref|ZP_06191077.1| NADH dehydrogenase subunit J [Serratia odorifera 4Rx13] gi|270043490|gb|EFA16583.1| NADH dehydrogenase subunit J [Serratia odorifera 4Rx13] Length = 186 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 84/166 (50%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FYL +AI+++ V++ NP++++ LI + + + +F LGA F A + ++VY G Sbjct: 2 EIAFYLAGLIAIVATIRVISHTNPVHALLYLIVSLLAISAVFFSLGAYFAAALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V + + + L + ++ + S + + Sbjct: 62 AIMVLFVFVVMMLNLGNAVQQQERDWLKPSVWIGPGLMSLALLVVLIVAIRSLSDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 120 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 165 >gi|206942067|gb|ACI22630.1| NADH-plastoquinone oxidoreductase subunit 6 [Aneura pinguis] Length = 192 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 11/176 (6%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 F I+ S VV + N ++S F L F A L+L L ++F+A +++ Sbjct: 6 SFHETVFIFPESGPILGSLGVVPLTNIVHSAFLLGFVSACTAPLYLSLDSDFIAAAQVLI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ V +F +M++ + E +G + + + + N + ++ E+ Sbjct: 66 YVGAINVLLIFAVMLI---KKGTEDYSAYKTVGDGITLVPCIGIFLLSDNTISNTSWSEV 122 Query: 122 --------SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + +N+ IG L T++ P E+ ILL++++GAI L + Sbjct: 123 YLIARSNDDEGIVPMDNIRRIGLELVTEFFIPFELMSLILLIALVGAITLARARKT 178 >gi|162456308|ref|YP_001618675.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|161166890|emb|CAN98195.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 171 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 5/165 (3%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + +L F + + + S+ LV RN I+S +L+ F+ AGL++ L A+F+A ++V Sbjct: 3 SLSALVFLGLAALTLGSAGLVAFSRNIIHSALALLGTFLGIAGLYVSLSADFIAATQVLV 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVG +V LF +M+ E+ + G +F G++ A L++ E Sbjct: 63 YVGGTLVLILFAVMLTSRIAEMKISNPRGGPAVAF--GLVTAVLLLLGRVATQTPWPAEA 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +G +Y P E+ +LL +MIGA+VL R Sbjct: 121 KPAMPS---TAKLGHAFLGEYLLPFELGSVVLLAAMIGAVVLARR 162 >gi|327403953|ref|YP_004344791.1| NADH dehydrogenase subunit J [Fluviicola taffensis DSM 16823] gi|327319461|gb|AEA43953.1| NADH dehydrogenase subunit J [Fluviicola taffensis DSM 16823] Length = 170 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 94/165 (56%), Gaps = 1/165 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY+ + I ++ +VV ++P+ SV L+ F + ++L+ A+F+A++ ++VY GA+ Sbjct: 6 IFYILGGLTIGTALMVVLSKHPVRSVLYLVLTFFLISANYVLMNAQFIAIVNIIVYAGAI 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V FLF++M+L+++ E +G+ G ++V A + + + Sbjct: 66 MVLFLFVLMLLNLNKENEPKHSPMMTIGAAVAGGSLFLVVVAAMRDAILATP-MIDANSE 124 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 K VEN+G++L+T+Y P E+S + L +M+GA++L + ++ I Sbjct: 125 KVGLVENLGQILFTKYVLPFEVSSVLFLAAMVGAVLLAKKEKQTI 169 >gi|22125533|ref|NP_668956.1| NADH dehydrogenase subunit J [Yersinia pestis KIM 10] gi|45442147|ref|NP_993686.1| NADH dehydrogenase subunit J [Yersinia pestis biovar Microtus str. 91001] gi|51596898|ref|YP_071089.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis IP 32953] gi|108808034|ref|YP_651950.1| NADH dehydrogenase subunit J [Yersinia pestis Antiqua] gi|108812304|ref|YP_648071.1| NADH dehydrogenase subunit J [Yersinia pestis Nepal516] gi|145599237|ref|YP_001163313.1| NADH dehydrogenase subunit J [Yersinia pestis Pestoides F] gi|149365547|ref|ZP_01887582.1| NADH dehydrogenase I chain J [Yersinia pestis CA88-4125] gi|153949644|ref|YP_001400440.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis IP 31758] gi|162418552|ref|YP_001606297.1| NADH dehydrogenase subunit J [Yersinia pestis Angola] gi|165925425|ref|ZP_02221257.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165937633|ref|ZP_02226195.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008411|ref|ZP_02229309.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213848|ref|ZP_02239883.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399044|ref|ZP_02304568.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422318|ref|ZP_02314071.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424390|ref|ZP_02316143.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023809|ref|YP_001720314.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis YPIII] gi|186895979|ref|YP_001873091.1| NADH dehydrogenase subunit J [Yersinia pseudotuberculosis PB1/+] gi|218929633|ref|YP_002347508.1| NADH dehydrogenase subunit J [Yersinia pestis CO92] gi|229838089|ref|ZP_04458248.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895288|ref|ZP_04510462.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis Pestoides A] gi|229898649|ref|ZP_04513794.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis biovar Orientalis str. India 195] gi|229902648|ref|ZP_04517765.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis Nepal516] gi|270490171|ref|ZP_06207245.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia pestis KIM D27] gi|294504361|ref|YP_003568423.1| NADH dehydrogenase subunit J [Yersinia pestis Z176003] gi|21958433|gb|AAM85207.1|AE013767_4 NADH dehydrogenase I chain J [Yersinia pestis KIM 10] gi|45437011|gb|AAS62563.1| NADH dehydrogenase I chain J [Yersinia pestis biovar Microtus str. 91001] gi|51590180|emb|CAH21817.1| NADH dehydrogenase I chain J [Yersinia pseudotuberculosis IP 32953] gi|108775952|gb|ABG18471.1| NADH dehydrogenase I chain J [Yersinia pestis Nepal516] gi|108779947|gb|ABG14005.1| NADH dehydrogenase I chain J [Yersinia pestis Antiqua] gi|115348244|emb|CAL21172.1| NADH dehydrogenase I chain J [Yersinia pestis CO92] gi|145210933|gb|ABP40340.1| NADH dehydrogenase I chain J [Yersinia pestis Pestoides F] gi|149291960|gb|EDM42034.1| NADH dehydrogenase I chain J [Yersinia pestis CA88-4125] gi|152961139|gb|ABS48600.1| NADH-quinone oxidoreductase, J subunit [Yersinia pseudotuberculosis IP 31758] gi|162351367|gb|ABX85315.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis Angola] gi|165914383|gb|EDR32998.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922534|gb|EDR39685.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992793|gb|EDR45094.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205022|gb|EDR49502.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958824|gb|EDR55845.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051548|gb|EDR62956.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056272|gb|EDR66041.1| NADH-quinone oxidoreductase, J subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750343|gb|ACA67861.1| NADH dehydrogenase (quinone) [Yersinia pseudotuberculosis YPIII] gi|186699005|gb|ACC89634.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia pseudotuberculosis PB1/+] gi|229680095|gb|EEO76194.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis Nepal516] gi|229688197|gb|EEO80268.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis biovar Orientalis str. India 195] gi|229694455|gb|EEO84502.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701774|gb|EEO89799.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis Pestoides A] gi|262362650|gb|ACY59371.1| NADH dehydrogenase subunit J [Yersinia pestis D106004] gi|262366279|gb|ACY62836.1| NADH dehydrogenase subunit J [Yersinia pestis D182038] gi|270338675|gb|EFA49452.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Yersinia pestis KIM D27] gi|294354820|gb|ADE65161.1| NADH dehydrogenase subunit J [Yersinia pestis Z176003] gi|320014615|gb|ADV98186.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 181 Score = 113 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + R G+LA L+ + ++ +S Sbjct: 62 AIMVLFVFVVMMLNLGNVEQQERAWLKPSMWIGPGLLALVLLSVLIYAISSVSDQGISGE 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 122 MVDA---KAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|153807447|ref|ZP_01960115.1| hypothetical protein BACCAC_01727 [Bacteroides caccae ATCC 43185] gi|149129809|gb|EDM21021.1| hypothetical protein BACCAC_01727 [Bacteroides caccae ATCC 43185] Length = 170 Score = 113 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 7/170 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V ++F I++ + + AE K+ F F + A +I+ + + + Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFFAGLFTMVAGAAIILFIT---LKHNFLQT 120 Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 + L + N+ +IG L + Y P E +LL +IG I++ + Sbjct: 121 NNLAPQEINIHSIGHALLSSDKYGYILPFEAVSILLLACIIGGIMIARKR 170 >gi|237751589|ref|ZP_04582069.1| NADH oxidoreductase I [Helicobacter bilis ATCC 43879] gi|229372955|gb|EEO23346.1| NADH oxidoreductase I [Helicobacter bilis ATCC 43879] Length = 203 Score = 113 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 8/159 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY+F + + + +VV N +Y++ +L F + +GLF LL A+F+ ++ ++VY Sbjct: 2 FEAIAFYVFGALCLCAFLIVVMTNNILYALTALAFGMILVSGLFFLLNADFLGVVQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+V + F +M+ D+ EV E + + + LIV + + Sbjct: 62 TGAVVVMYAFGMMLFDVSKEVKERFQNQFMVWLLVSIFAIGLLIVV--------GNTQTT 113 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 N+ + +L+ Y E + +LL++MI I Sbjct: 114 IPYQNDNSTNALAHLLFKDYLVCFEAAAIMLLMAMIAGI 152 >gi|283795021|ref|YP_003359412.1| NADH dehydrogenase subunit 6 [Olea europaea] gi|330850796|ref|YP_004376474.1| NADH dehydrogenase subunit 6 [Olea europaea subsp. europaea] gi|281428740|gb|ADA69979.1| NADH dehydrogenase subunit 6 [Olea europaea] gi|291059307|gb|ADD72143.1| NADH-plastoquinone oxidoreductase subunit 6 [Olea europaea] gi|328795486|emb|CBR30368.1| NADH dehydrogenase subunit 6 [Olea europaea subsp. europaea] Length = 176 Score = 113 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ S VV + NPIYS FSL + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLILGSLGVVLLPNPIYSAFSLGLVLFCISLFYILSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ + +F +M + D + S FI ++ + Sbjct: 67 VGAINILIIFAVMFMSGSEYYKDFHLWTVGDGVTSIVCTSLFISLITTIPDTSWYGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 127 TKSNQIIEQDL-ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAIARQ 176 >gi|189346379|ref|YP_001942908.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium limicola DSM 245] gi|189340526|gb|ACD89929.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium limicola DSM 245] Length = 173 Score = 113 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY+F+ + + S+ VV +N IYS F+L+F F A L++ L A+F+A+ +VVYVG + Sbjct: 9 IFYIFAAITVFSAAFVVFSKNVIYSAFALLFTFFGVAALYVFLSADFIAVTQIVVYVGGI 68 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V LF +M + + + K L +L + + + S + Sbjct: 69 LVLLLFGVMFTN---SIMQTDLKSDVLHVVPGTLLLLATVGGLLFTFYTTGTWKPSDVQL 125 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 G+ VE IG ++Y P E++ +LL +IGA L + Q Sbjct: 126 HGSVVERIGIETMSRYVLPFEMASILLLAVLIGAAFLARYDKVRNNEQ 173 >gi|260598697|ref|YP_003211268.1| NADH:ubiquinone oxidoreductase subunit J [Cronobacter turicensis z3032] gi|260217874|emb|CBA32418.1| NADH-quinone oxidoreductase subunit J [Cronobacter turicensis z3032] Length = 187 Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 83/164 (50%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + AG+F LGA F + ++VY G Sbjct: 2 EFAFYICALVAVLTTARVITHSNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V ++ + + + +++ + + + + Sbjct: 62 AIMVLFVFVVMMLNLGDSVVRQEREWLKPQIWIGPGILSAVLLVVIVYAILGVNDQ--GI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + +G L+ Y +E++ +LL ++ A L + Sbjct: 120 EGNPISAKAVGTDLFKTYVLAVELASMLLLAGLVVAFHLGREEK 163 >gi|251799768|ref|YP_003014499.1| NADH dehydrogenase subunit J [Paenibacillus sp. JDR-2] gi|247547394|gb|ACT04413.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus sp. JDR-2] Length = 171 Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 3/163 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F++FS + II + L+V+++ ++ V S+ F+ AG+F+LL AEFVA + +++Y Sbjct: 9 EFATFFIFSAIMIIGAVLMVSLQKVVHMVISMAAVFLGLAGMFVLLDAEFVAFVQVLIYA 68 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV + +F IMM + + A+P K + + ++ A F + Sbjct: 69 GAVSILMIFGIMMTNHQNKQADPVKPLHETLAAVGALCLFGILFYAIRTTDFP---DAQP 125 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L +N +IG++LYT Y P E+ +L ++ IGAI + + Sbjct: 126 LQAVEDNTSSIGQLLYTGYVVPFELLSVLLTVAFIGAIAIAKK 168 >gi|193212952|ref|YP_001998905.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobaculum parvum NCIB 8327] gi|193086429|gb|ACF11705.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobaculum parvum NCIB 8327] Length = 173 Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 93/170 (54%), Gaps = 5/170 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+F+ + ++S+ VV +N IYS FSL+F F A L++ L A+F+A+ +VVYVG Sbjct: 8 IIFYIFAAVTVVSAAFVVFSKNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVGG 67 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V LF +M + + + + + G++ L++ F ++ G + LV Sbjct: 68 ILVLLLFGVMFTNTIMSTE----LKADVMNMVPGVILLFLMIAGMLFTFYTGGGWMPGLV 123 Query: 126 -FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 +G+ VE+IG ++Y P E+ +LL++++GA L + K Q Sbjct: 124 QLQGSVVESIGMETMSRYMLPFEMVSIVLLVALLGAAYLARYDKAQNKEQ 173 >gi|115391956|ref|YP_778544.1| NADH dehydrogenase subunit 6 [Jasminum nudiflorum] gi|122164926|sp|Q06R77|NU6C_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|110456277|gb|ABG74682.1| NADH degydrogenase subunit 6 [Jasminum nudiflorum] Length = 176 Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 16/175 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ S VV + NPIYS FSL + ++LL + FVA L++Y Sbjct: 7 IHDFLLVFLELGLILGSLGVVFLPNPIYSAFSLGLVLFCISLFYILLNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M ++ K +L + G+ + + + + Sbjct: 67 VGAINVLIIFAVMFMN-----GSEYYKDFYLWTVGDGVTSMVCTSLFISLITTIPDTSWY 121 Query: 123 RLVFKG-----------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +++ +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 122 GIIWTTKSNQIIEKDLISNSQQIGIHLVTDFFLPFELISIILLVALIGAIAIARQ 176 >gi|288819088|ref|YP_003433436.1| NADH dehydrogenase I chain J [Hydrogenobacter thermophilus TK-6] gi|288788488|dbj|BAI70235.1| NADH dehydrogenase I chain J [Hydrogenobacter thermophilus TK-6] gi|308752671|gb|ADO46154.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobacter thermophilus TK-6] Length = 163 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 89/165 (53%), Gaps = 3/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + L S ++S+ + ++NP++ + + + + AG+FL + AE +A + L++Y Sbjct: 1 MEWVITALLSLWLVLSALCTIFMKNPVHVILAFLSVILAMAGIFLQMKAELLAGLQLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 A++VF++ +I ++ + R + + F G + ++MV + Sbjct: 61 AVAIVVFYVLVITVIPWE---KVKRFEGIYKQELFWGAPFFLISFLLMSYMVLKGKFAQP 117 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V G+NV ++GK L+T Y +P E++ ILL++MIGAI+L + Sbjct: 118 LNVISGDNVRDVGKNLFTSYLFPFEVASVILLVAMIGAILLGRKE 162 >gi|299138533|ref|ZP_07031712.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidobacterium sp. MP5ACTX8] gi|298599779|gb|EFI55938.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidobacterium sp. MP5ACTX8] Length = 168 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 10/171 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ+ F +F +A++ + ++ R+PI S SLI ++ A L+ LGAEF+A ++VY Sbjct: 1 MQTALFIIFGLLAVLGALNLLFQRHPINSALSLIVVMMSLAVLYWSLGAEFLAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IM+L+ E + G ++ GI A I C F+ S + +L Sbjct: 61 SGAIMVLFVFVIMLLN----AGEEERTHGSQIAYIAGIPGAAAIFCLLTFVFLSEKKQLG 116 Query: 123 RLVFKG------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 G +N+ I L+T P E++ ++L++++GA+VL + Sbjct: 117 TTQLGGYLTSAVSNITEISHTLFTSLLLPFEVTSILILVAILGAVVLARKE 167 >gi|154175162|ref|YP_001407453.1| NADH dehydrogenase subunit J [Campylobacter curvus 525.92] gi|112803258|gb|EAU00602.1| transcriptional regulator, LuxR family [Campylobacter curvus 525.92] Length = 177 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 86/164 (52%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ FYLFS +++ + V +N ++++ +L + LF LLGAEF+ ++ ++VY Sbjct: 3 EAIAFYLFSALSLGCFGVSVFSKNALHAMSALAGGMIFICALFFLLGAEFLGVVQIIVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+V + F +M DI + E + + + A L+V + V + Sbjct: 63 GAVMVLYAFSMMFFDISRDANESYSLASKRLIYTLSVFIALLLVIVFSSPVIGQNLAAQQ 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + N+E IG +L+ +Y E++ +LL++M+ IVL+ + Sbjct: 123 SAQELGNIELIGLMLFGKYLIAFELTAIMLLVAMVAGIVLVHKK 166 >gi|156573609|gb|ABU85140.1| NADH-plastoquinone oxidoreductase subunit 6 [Yucca schidigera] Length = 176 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + +F I+ VV NPIYS FSL V + ++ + FVA L++Y Sbjct: 7 IHDIFVVFLGSFLILGGLGVVLFTNPIYSAFSLGLVLVCISLFYIPSNSYFVAAPQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V +F IM ++ + S ++ L + + Sbjct: 67 VGAINVLIIFAIMFMNGSEYSNDSYLWTVGDGITSLVCTSILFSLITTILDMSWYGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + ++ +NV+ IG L T + P E+ ILL+S+IGAI + + Sbjct: 127 TRKNQIIEQDL-ISNVQQIGIHLSTDFYLPFELISIILLVSLIGAITMAHQ 176 >gi|290489874|gb|ADD31344.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Heuchera sanguinea] Length = 176 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ VV + NPIYS FSL V + ++ + FVA L++Y Sbjct: 7 IHDFLLVFLGSALILGGLGVVLLTNPIYSAFSLGLVLVCISLFYISSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M ++ + +G ++ + V + ++ + Sbjct: 67 VGAINVLIIFAVMFMNGSGSYKDFTL--WTVGDGVTSVVCTSIFVSLITIIPDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 125 WTTRSNQIIEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAITVARQ 176 >gi|304407743|ref|ZP_07389394.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus curdlanolyticus YK9] gi|304343226|gb|EFM09069.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paenibacillus curdlanolyticus YK9] Length = 173 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 1/164 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F++ S + I S L+V+ ++ V SL F+ G+F++L AEF+A + +++Y Sbjct: 9 EFVAFFVLSVLMITGSVLMVSFTKVVHMVLSLAAVFLGVGGMFIMLDAEFLAFVQVLIYA 68 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV + +F IMM + E K + I L+ F+ + + Sbjct: 69 GAVSILMIFGIMMTNHQEASGESVKPLRETLAAVAAIALFGLLFFVIQAADFT-DTSGAA 127 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +N IG++L+ Y P E+ +L ++ IGAIVL + Sbjct: 128 PPPAADNTLAIGELLFHGYIVPFELVSVLLTVAFIGAIVLARKE 171 >gi|296274185|ref|YP_003656816.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Arcobacter nitrofigilis DSM 7299] gi|296098359|gb|ADG94309.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcobacter nitrofigilis DSM 7299] Length = 171 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 1/168 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F SFMAI ++ + P+Y+ L+ + ++ +GLF LL A F+ M+ ++VY Sbjct: 1 MTDILFIGLSFMAIAGGLTMLIHKQPMYAALGLLISILSVSGLFALLSATFLFMVQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++ LFI+M L+ID E P++ + I+ L + + + ++S Sbjct: 61 AGAIMTLLLFILMFLNID-EHDLPKEPKKVRNIIIGAIVMLPLNIVILTAVSALPKKDMS 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + ++ IG +LY + E+ +LL++++GAIVL R + Sbjct: 120 IIETNFGGIKEIGMLLYQNWLISFELISILLLVALVGAIVLAKRKKTR 167 >gi|90200379|ref|NP_777467.2| NADH dehydrogenase subunit 6 [Anthoceros formosae] Length = 197 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +FF I S VV + N +YS F L FV + L+LLL A+FVA +++YVG Sbjct: 9 EVFFVFIELGLIFGSLGVVFLTNIVYSAFLLGLVFVCISFLYLLLDADFVATAQILIYVG 68 Query: 65 AVIVFFLFIIMMLDIDIEVA-------EPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 AV + +F +M+++ + S F +++ L + SN + Sbjct: 69 AVNILIVFAVMLINKPQSLQFLPSWTVGDTITLILCTSLFFLLISMILSISWSNIFSIAQ 128 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 ++ V K ++V+ IG L + P E+ +LL+++IGAI + R ++ Sbjct: 129 SNKIGEQVLK-SSVQGIGSSLLIDFLLPFELLSIVLLVALIGAITIARREKK 179 >gi|197131420|gb|ACH47228.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium cotyledonis] Length = 176 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ S VV + NPIYS FSL F F+ + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP--RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VGA+ V +F +M ++ E L S IL LI N + Sbjct: 67 VGAINVLIIFAVMFMNGSEYYKESPLWTVGDGLTSLISTILFFSLITTILNTSWYGIIWT 126 Query: 121 LSRLVFKG----NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + +G L T + P E+ ILL++++GAI + + Sbjct: 127 TRSNQIIEKDLISNSQQLGIHLSTDFFLPFELISIILLVALLGAISVARQ 176 >gi|325610491|gb|ADZ36442.1| NADH dehydrogenase subunit 6 [Polyspora chrysandra] Length = 176 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S V+ NPI S FSL FV + ++L + FVA L++YVGA+ V +F +M + Sbjct: 22 GSLGVILFPNPISSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFM 81 Query: 78 D-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 + + S F+ +++ L + + ++ +N Sbjct: 82 NDSEYYKDFHLWTVGDGITSMVCTSIFVSLISTILDTSWYGIIWATKSNQILEQDL-ISN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + IG L T + P E+ ILL+++IGAI + + Sbjct: 141 SQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|269977607|ref|ZP_06184574.1| NADH dehydrogenase subunit j [Mobiluncus mulieris 28-1] gi|307701312|ref|ZP_07638333.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mobiluncus mulieris FB024-16] gi|269934210|gb|EEZ90777.1| NADH dehydrogenase subunit j [Mobiluncus mulieris 28-1] gi|307613473|gb|EFN92721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Mobiluncus mulieris FB024-16] Length = 352 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 1/162 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++F + S A++ V R +++ ++ ++ AG++ LGAEF+ + +VVY Sbjct: 21 QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ LF+IM++ + + PR+ + + A I+ + + Sbjct: 81 GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 +N I + QY +P+E+ +L+++ +GA+ L Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTLTH 181 >gi|300775182|ref|ZP_07085044.1| NADH-quinone oxidoreductase subunit J [Chryseobacterium gleum ATCC 35910] gi|300505922|gb|EFK37058.1| NADH-quinone oxidoreductase subunit J [Chryseobacterium gleum ATCC 35910] Length = 165 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 97/165 (58%), Gaps = 3/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F+L +F+A+ S+ V +NP+Y++ SLI + AG+++LL A+F+A+I ++VY Sbjct: 1 MDQFLFFLVAFLAVASAVYFVFAKNPLYAILSLIVTMFSIAGMYILLNAQFLAIIQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++V FL+I+MML+++ + ++ F+G F G+L ++ + + Sbjct: 61 AGAIMVLFLYILMMLNLNKADESKKNNTLKFVGVFTAGLLLIGVLGVFRG--IQDNHIVV 118 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +N+G++L+ +Y P E++ ++L ++GA+++ + Sbjct: 119 ENVDRGVGLTKNLGRLLFNEYVLPFELASILILAGIVGAVLIGKK 163 >gi|48474399|sp|Q85CT7|NU6C_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|27807929|dbj|BAC55404.1| NADH dehydrogenase ND6 subunit [Anthoceros formosae] gi|27808102|dbj|BAC55504.1| NADH dehydrogenase ND6 subunit [Anthoceros formosae] Length = 200 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +FF I S VV + N +YS F L FV + L+LLL A+FVA +++YVG Sbjct: 12 EVFFVFIELGLIFGSLGVVFLTNIVYSAFLLGLVFVCISFLYLLLDADFVATAQILIYVG 71 Query: 65 AVIVFFLFIIMMLDIDIEVA-------EPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 AV + +F +M+++ + S F +++ L + SN + Sbjct: 72 AVNILIVFAVMLINKPQSLQFLPSWTVGDTITLILCTSLFFLLISMILSISWSNIFSIAQ 131 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 ++ V K ++V+ IG L + P E+ +LL+++IGAI + R ++ Sbjct: 132 SNKIGEQVLK-SSVQGIGSSLLIDFLLPFELLSIVLLVALIGAITIARREKK 182 >gi|156598197|gb|ABU85362.1| NADH-plastoquinone oxidoreductase subunit 6 [Elaeis oleifera] Length = 176 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F + I+ VV + NPI+S FSL V + ++L + FVA L++Y Sbjct: 7 IHDILVVFFGSVLILGGLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M ++ + +G ++ ++ + ++ + Sbjct: 67 VGAINVLIIFAVMFMNGSEYSNDSYF--WTIGDGVTSLVCTSILFSLITIIPDTSWYGIF 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N++ IG L T + P E+ ILL+S+IGAI + + Sbjct: 125 WTTRSSQIMEQDLISNIQQIGIHLSTDFYLPFELISIILLVSLIGAITMARQ 176 >gi|306817877|ref|ZP_07451616.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|304649356|gb|EFM46642.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] Length = 352 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 1/162 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++F + S A++ V R +++ ++ ++ AG++ LGAEF+ + +VVY Sbjct: 21 QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ LF+IM++ + + PR+ + + A I+ + + Sbjct: 81 GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 +N I + QY +P+E+ +L+++ +GA+ L Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTLTH 181 >gi|238753746|ref|ZP_04615107.1| NADH-quinone oxidoreductase subunit J [Yersinia ruckeri ATCC 29473] gi|238707982|gb|EEQ00339.1| NADH-quinone oxidoreductase subunit J [Yersinia ruckeri ATCC 29473] Length = 181 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ + +A++++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAALVAVVATIRVITHTNPVHALLYLIISLLAISAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + R S +IG L++ + S+ + + Sbjct: 62 AIMVLFVFVVMMLNLGKVDEQERA--WLKPSVWIGPALLALVLLSVLIYAISSLTD-QGI 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E++ +LL ++ A + H+ Sbjct: 119 SGEMVDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHIGREHKPG 164 >gi|159036136|ref|YP_001535389.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora arenicola CNS-205] gi|157914971|gb|ABV96398.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Salinispora arenicola CNS-205] Length = 200 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 14/204 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +A+ S LVV R+ + + L+ AG++L+L AE VA + ++ Sbjct: 1 MTAADALLLALGALAVGSGALVVATRHLVRAGLYLVLCLAAVAGMYLVLTAELVAWVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGAV+V LF +M+ I + + G+ + G L + +S Sbjct: 61 IYVGAVVVLLLFAVMLTRAPIGASTDLDRPGWPAALIGGGTGLGLAALLVDAYRWSTV-- 118 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + E IG+ ++ + P E+ +LL +++GAI+L R DI R + + Sbjct: 119 ---QLPTAGTAERIGEQVFQSWVLPFEVLSMLLLAALVGAIIL---SRPDIGRPPVDRDG 172 Query: 181 ESNP------DNSIVMVKVKSGKG 198 + P ++ V K G+G Sbjct: 173 QGRPGRAGDAADATGGVDGKPGEG 196 >gi|227874593|ref|ZP_03992756.1| NADH dehydrogenase subunit J [Mobiluncus mulieris ATCC 35243] gi|227844802|gb|EEJ54948.1| NADH dehydrogenase subunit J [Mobiluncus mulieris ATCC 35243] Length = 353 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 1/162 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q++F + S A++ V R +++ ++ ++ AG++ LGAEF+ + +VVY Sbjct: 21 QAIFLAVASGAALVCGLSVAFSRRAVHAAVYMLGMMISLAGIYFSLGAEFLGAVQIVVYT 80 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA+++ LF+IM++ + + PR+ + + A I+ + + Sbjct: 81 GAIMMMILFVIMLVGVQ-SIDAPRESERVTVVAAVLMAVALAILAIVAASHTTMNALIKA 139 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 +N I + QY +P+E+ +L+++ +GA+ L Sbjct: 140 PDNPADNPVQIAGAIINQYYFPMEMVACLLIIAAVGAMTLTH 181 >gi|325610641|gb|ADZ36569.1| NADH dehydrogenase subunit 6 [Stewartia crassifolia] Length = 176 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M + Sbjct: 22 GSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFM 81 Query: 78 D-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 + + S F+ ++ L + + ++ +N Sbjct: 82 NGSEYSKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWATKSNQILEQDL-ISN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + IG L T + P E+ ILL+++IGAI + + Sbjct: 141 SQKIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176 >gi|91214192|ref|YP_538815.1| NADH dehydrogenase subunit 6 [Glycine max] gi|122202478|sp|Q2PMN5|NU6C_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|83595793|gb|ABC25174.1| NADH-plastoquinone oxidoreductase subunit 6 [Glycine max] Length = 176 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ S VV NPI+S FSL V + ++L + FVA L++Y Sbjct: 7 LHDFLLVFLGSGLILGSLGVVLFTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V +F +M ++ + R S F+ ++ L + Sbjct: 67 VGAINVLIIFAVMFMNGSEYYQDFRLWTVGDGITLMVCTSIFVSLITTILDTSWHGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ + + IG L T + P E+ ILL+++IGAIV+ + Sbjct: 127 TRPNQIIEQDLISTS-QQIGIHLSTDFFLPFELISIILLVALIGAIVVARQ 176 >gi|325610548|gb|ADZ36490.1| NADH dehydrogenase subunit 6 [Stewartia rubiginosa] gi|325610574|gb|ADZ36513.1| NADH dehydrogenase subunit 6 [Stewartia monadelpha] gi|325610594|gb|ADZ36530.1| NADH dehydrogenase subunit 6 [Stewartia sinensis] Length = 176 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M + Sbjct: 22 GSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFM 81 Query: 78 D-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 + + S F+ ++ L + + ++ +N Sbjct: 82 NGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWATKSNQILEQDL-ISN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + IG L T + P E+ ILL+++IGAI + + Sbjct: 141 SQKIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176 >gi|213018784|ref|ZP_03334592.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995735|gb|EEB56375.1| NADH dehydrogenase I, J subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 143 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 92/146 (63%), Gaps = 8/146 (5%) Query: 56 MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 M+ ++VY+GAV V FLF++MMLDID R ++GF +G + + +F++ Sbjct: 1 MMVMIVYIGAVAVLFLFVVMMLDIDY----IRLRQGFAKHCTLGAMLCVVFFLVISFVIR 56 Query: 116 SAEGELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKR 173 S+ +S ++ + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ +K+ Sbjct: 57 SSAPNISNVINYNTNNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKK 116 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q++ KQL +S+ +VK K GKG+ Sbjct: 117 QNVLKQL--TQSSSVKLVKAKFGKGV 140 >gi|296936724|gb|ADH94396.1| NADH-plastoquinone oxidoreductase subunit 6 [Syzygium cumini] Length = 176 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ S VV + NPIYS FSL V + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLILGSLGVVLLINPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + LF +M ++ + +G ++ ++V ++ ++ + Sbjct: 67 VGAINILILFAVMFMNGSEYYKDLNL--WTVGDGITSLVCTSILVSLMTTILDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 N + IG L T + P E+ ILL+++IGAI + + Sbjct: 125 WTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|306486044|gb|ADM92669.1| NADH-plastoquinone oxidoreductase subunit 6 [Franklinia alatamaha] Length = 158 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 8/159 (5%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 I+SS V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F + Sbjct: 1 LILSSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAV 60 Query: 75 MMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 M ++ + S F+ ++ L + + ++ Sbjct: 61 MFMNGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWATKSNQILEQDL- 119 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 120 ISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 158 >gi|84494921|ref|ZP_00994040.1| NADH dehydrogenase subunit J [Janibacter sp. HTCC2649] gi|84384414|gb|EAQ00294.1| NADH dehydrogenase subunit J [Janibacter sp. HTCC2649] Length = 269 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 73/152 (48%), Gaps = 3/152 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ + +A++ + ++ R +++ + + +L GA+F+ +I + V Sbjct: 4 TGEAILFWVLAPLAVVGALGLIFARKAVHAALGMALTMIILGVFYLAQGADFLGVIQIFV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 Y GAV++ FLF++M++ +D V + +R +G+ A + + + Sbjct: 64 YTGAVMMLFLFVVMLVGVDSSDSIVETLKGQRAAATVLTLGLGALLMGAIGRITIGDAPA 123 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISG 150 +L + NV + ++++ +Y + E + Sbjct: 124 NKLDAINTDKGNVSGVAELIFGRYVWVFEATS 155 >gi|196228500|ref|ZP_03127367.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chthoniobacter flavus Ellin428] gi|196227903|gb|EDY22406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chthoniobacter flavus Ellin428] Length = 170 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 3/168 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FYLF+ + + VV RNP+ S L+ +F+ A LF+ L A F+A+I ++VY Sbjct: 1 MSPILFYLFAALTVCFGIAVVANRNPVASALCLVVSFLGLAALFVGLDAYFIAVIQVLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+V FLFIIM+LD+ E ++G + + + + + + Sbjct: 61 AGAVMVLFLFIIMLLDLKAETRRKPNLPAYVGGGLVALAFIAQLWLVLERYSAAHQPFPT 120 Query: 123 RLVFKG---NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +G ++V N+G L++ + P ++ G ++L++ IG +VL R Sbjct: 121 MWASEGKSIDDVTNVGTTLFSVHNLPFQVIGVLILVATIGVVVLSKRE 168 >gi|255037785|ref|YP_003088406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter fermentans DSM 18053] gi|254950541|gb|ACT95241.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dyadobacter fermentans DSM 18053] Length = 173 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 88/171 (51%), Gaps = 4/171 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+++ FY+FS + +++ ++ RN IY F+L AF+ A L++L GA+F+A+ +++Y Sbjct: 1 MEAIIFYIFSALTLLAGLFILVSRNLIYGAFALFLAFLGVAALYVLAGADFLAVSQIMIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCASNFMVFSAEG 119 VG ++V +F IM+ + + + + G+LA ++ S++ Sbjct: 61 VGGILVLLIFGIMLTQKREKSDDSTRHNRVDVPITRRIWGVLAGVGFFGLLVKVILSSDF 120 Query: 120 ELSRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 ++ + + IG L T + P E++ +LL+++IGA L L Sbjct: 121 AMAGAEMSTKSTIRTIGVELMTSHLLPFEVAAILLLVALIGAAYLALNRNP 171 >gi|42525211|ref|NP_970591.1| NADH dehydrogenase I chain J [Bdellovibrio bacteriovorus HD100] gi|39577422|emb|CAE81245.1| NADH dehydrogenase I chain J [Bdellovibrio bacteriovorus HD100] Length = 178 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 5/172 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F+ +F+ + S V+ + NPIYS L V + LF+ L A F+A + L+ Sbjct: 1 MTADAFLFWFLAFVTLASGLSVILMSNPIYSALCLAMTMVGISALFVTLNAYFIAGVQLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAE 118 VY GAV+V F +IM+ D+ +V + + G + +G+ A ++ + + E Sbjct: 61 VYAGAVMVLFTMVIMLFDLKKDVQAFTRGKFTGVVKIASVGLFAGLVVGAIAMSVNLMGE 120 Query: 119 GELSRLVFKGN---NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V G + + +G++L+T+Y + E G +LL+ +GA+ L Sbjct: 121 KTTDNPVLVGTGMESTKALGQILFTKYIFGFEALGVLLLVIAVGAVALARSK 172 >gi|24372599|ref|NP_716641.1| NADH dehydrogenase subunit J [Shewanella oneidensis MR-1] gi|24346624|gb|AAN54086.1|AE015546_3 NADH dehydrogenase I, J subunit [Shewanella oneidensis MR-1] Length = 183 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 87/166 (52%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FY + +A+ S+ V++ NP++++ +LI + + A +F LGA F + ++VY G Sbjct: 2 ELAFYASALVAVYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGAAFAGALQVIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + A+ + + G+L+ L+ ++ ++ G++ Sbjct: 62 AIMVLFVFVVMMLNLGSDQAQEKNWLTPMTWVGPGLLSLTLLGFLAHGILGVTGGQIG-- 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL M+ A L + Sbjct: 120 -LTEVSAKQVGIELFGPYVLAVELASILLLAGMVTAYHLGREDKSG 164 >gi|323481962|ref|YP_004237305.1| NADH dehydrogenase subunit 6 [Lophelia pertusa] gi|323461315|emb|CBZ41203.1| NADH dehydrogenase subunit 6 [Lophelia pertusa] Length = 168 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V++ NP++S F L+ F+N+A FLLLG +F+A++ L+VYVGA+ V FLF+IM+L++ Sbjct: 1 MVISALNPVFSPFWLVIVFINSAVFFLLLGVDFIALMFLLVYVGAIAVLFLFVIMLLNLT 60 Query: 81 IEVAEPRKKR---------GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 K+ GFL F A+ F + + L+ +N+ Sbjct: 61 DYPPAFFKREADMTNYIPIGFLIGVFFFSEASSSWFVLGPFQKENWDLSFPWLIISYHNI 120 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 E +G+VLY ++ FILL++MIGAI L K Q + Sbjct: 121 EALGQVLYVVCCCLFILASFILLVAMIGAIFLTQDKAPLGKTQQL 165 >gi|237714288|ref|ZP_04544769.1| NADH dehydrogenase subunit I [Bacteroides sp. D1] gi|237719848|ref|ZP_04550329.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4] gi|262408335|ref|ZP_06084882.1| NADH dehydrogenase subunit I [Bacteroides sp. 2_1_22] gi|293373610|ref|ZP_06619958.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides ovatus SD CMC 3f] gi|294646449|ref|ZP_06724090.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides ovatus SD CC 2a] gi|294809421|ref|ZP_06768126.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides xylanisolvens SD CC 1b] gi|298480347|ref|ZP_06998545.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. D22] gi|229445780|gb|EEO51571.1| NADH dehydrogenase subunit I [Bacteroides sp. D1] gi|229451117|gb|EEO56908.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4] gi|262353887|gb|EEZ02980.1| NADH dehydrogenase subunit I [Bacteroides sp. 2_1_22] gi|292631435|gb|EFF50065.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides ovatus SD CMC 3f] gi|292638220|gb|EFF56597.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides ovatus SD CC 2a] gi|294443357|gb|EFG12119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides xylanisolvens SD CC 1b] gi|295086640|emb|CBK68163.1| NADH dehydrogenase subunit J [Bacteroides xylanisolvens XB1A] gi|298273628|gb|EFI15191.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. D22] Length = 170 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 7/170 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V ++F I++ + + AE K+ L F I +I+ + F + Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKAKRSKVLAGLFTMIAGLAIILFITLKHDFM---QT 120 Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 + L + ++ IG L + Y P E +LL +IG I++ + Sbjct: 121 ANLAPQEISIHAIGNALLSSDKYGYVLPFEAVSILLLACIIGGIMIARKR 170 >gi|119356795|ref|YP_911439.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium phaeobacteroides DSM 266] gi|119354144|gb|ABL65015.1| NADH dehydrogenase subunit J [Chlorobium phaeobacteroides DSM 266] Length = 172 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FYLF+ + + S+ VV R+ IYS FSL+F F A L++LL A+F+A+ +VVYVG Sbjct: 7 TIIFYLFAAITVFSAAFVVFSRSVIYSAFSLLFTFFGTAALYVLLSADFIAVTQVVVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V LF +M + + + K L +L A + + + S + Sbjct: 67 GILVLLLFGVMFTN---SIMQTDLKTDVLHVVPGTLLFAAITGGMLYVFYTTGTWKSSLV 123 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +G+ VE IG ++Y P E++ +LL +IGA L + Sbjct: 124 TLQGSVVERIGYETMSRYILPFEMASILLLAVLIGAAFLARFDKPG 169 >gi|298384969|ref|ZP_06994528.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 1_1_14] gi|298262113|gb|EFI04978.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 1_1_14] Length = 170 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 7/170 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V ++F I++ + + AE K+ FL F I +I+ + + + Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFLAGLFTMIAGLAIILFIT---LKHNFLQT 120 Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 + LV N+ IG L + Y P E +LL +IG I++ + Sbjct: 121 TNLVPLEINIHTIGNALLSSDKYGYILPFEAISILLLACIIGGIMIARKR 170 >gi|315453244|ref|YP_004073514.1| NADH dehydrogenase I chain J [Helicobacter felis ATCC 49179] gi|315132296|emb|CBY82924.1| NADH dehydrogenase I chain J [Helicobacter felis ATCC 49179] Length = 174 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 2/167 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++L FY F+ + + +F+VVT N +Y++ SL A V + F LL AEF+ ++ ++VY Sbjct: 2 FETLAFYFFAALTLGMAFVVVTTTNILYAMTSLATAMVFVSAFFFLLDAEFLGVVQILVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--E 120 VGAV+V + F +M L+ EV E + + + + + F+ A E Sbjct: 62 VGAVVVMYAFGMMFLNASQEVQERAHAPKIPALLVMVLAVVLVALLGAPFIAQYAYTLQE 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +N + IG VL+++Y E+ F+LL++++GAI L+ Sbjct: 122 SLSPSVDISNTKLIGYVLFSKYLVAFEVGAFMLLVALVGAIASALKK 168 >gi|149280561|ref|ZP_01886677.1| NADH dehydrogenase I chain J [Pedobacter sp. BAL39] gi|149228676|gb|EDM34079.1| NADH dehydrogenase I chain J [Pedobacter sp. BAL39] Length = 165 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 2/166 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY + + +I S +VV +NP++SV LI F ++LL A+F+A++ +VY Sbjct: 1 MGTSVFYFVATLTVIFSLMVVFAKNPVHSVLYLIVTFFTLTVHYILLNAQFLAVVNFIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +GA++V FLF++M+L+++ + + + G IV + S L Sbjct: 61 MGAIMVLFLFVLMLLNLNKDNEPLKSTLVKVVGVVAGCCLVVTIVGSLKATAISDPVVLR 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 V+N+GK L+ Y P E+S +LL +M+GA++L + + Sbjct: 121 NPNLGL--VKNLGKELFGPYMLPFELSSILLLTAMVGAVLLTKKEK 164 >gi|242310563|ref|ZP_04809718.1| predicted protein [Helicobacter pullorum MIT 98-5489] gi|239522961|gb|EEQ62827.1| predicted protein [Helicobacter pullorum MIT 98-5489] Length = 187 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 2/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY FS + + +VVT +N +Y++ +L + +G F LLGAEF+ ++ +VVY Sbjct: 2 FEAIAFYTFSALTLAMFLIVVTTKNILYALSALAAGMIFVSGFFFLLGAEFLGVVQIVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--FSAEGE 120 GAVI + F +M D E + L +++ + + S Sbjct: 62 TGAVIALYAFAMMFFDAQKLQNERIENPKLLFLLVGLGALLLVLIVVAPIIAQNLSQISP 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 + + NV+ +G VL+T++ P EI+ +LL++MI I+L Sbjct: 122 QIPVKEEVGNVQMVGYVLFTKFLIPFEIAAIMLLVAMIAGIILA 165 >gi|167463147|ref|ZP_02328236.1| NADH dehydrogenase subunit J [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383092|ref|ZP_08056919.1| hypothetical protein PL1_1941 [Paenibacillus larvae subsp. larvae B-3650] gi|321152754|gb|EFX45380.1| hypothetical protein PL1_1941 [Paenibacillus larvae subsp. larvae B-3650] Length = 173 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 5/161 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F F+ AI + +VT IY V S F F++ AGL++LL AEFVA + +++Y GA+ Sbjct: 16 LFLFFAMCAIGGAIYMVTFTKVIYMVLSAAFTFISLAGLYVLLEAEFVAFVQVLIYAGAI 75 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + +F IMM E + + + + L+ A FS + Sbjct: 76 SILMIFGIMMTKHRAEEKPGGRVAQKVLTGIGCLALFGLLFYAIQQSTFSP-----GELR 130 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +N IGK+L++ + P EI +L ++ IGAIV+ R Sbjct: 131 EEDNTLEIGKLLFSGHVIPFEIMSVLLTVAFIGAIVIAKRE 171 >gi|156598391|gb|ABU85455.1| NADH-plastoquinone oxidoreductase subunit 6 [Musa acuminata] Length = 176 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + + I+ VV + NPIYS FSL V + ++ + FVA L++Y Sbjct: 7 IHDILVAFLGSVLILGGLGVVLLTNPIYSAFSLGLVLVCISLFYIPSNSFFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V +F +M ++ + +G ++ ++ + ++ + Sbjct: 67 VGAVNVLIIFAVMFMNGSEYSNDSYF--WTIGDGVTSLVCTSILFSLITTIPDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +NV+ IG L T + P E+ ILL+S+IGAI + + Sbjct: 125 WTTRSNQIIEQDLISNVQQIGIHLSTDFYLPFELISIILLVSLIGAITMARQ 176 >gi|93005411|ref|YP_579848.1| NADH dehydrogenase (quinone) [Psychrobacter cryohalolentis K5] gi|92393089|gb|ABE74364.1| NADH dehydrogenase (quinone) [Psychrobacter cryohalolentis K5] Length = 247 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 79/144 (54%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + FY + +AI +S VVT NP++++ S+I + + AG+F ++GA F + +VVY Sbjct: 9 ELAGFYSLAAVAIFASLRVVTQANPVHAILSMIVSLLAIAGIFFVIGAPFAGALEIVVYA 68 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA++V F+F+IMML++ + E ++ G++ I +I M+ E + Sbjct: 69 GAIMVLFVFVIMMLNLGMRNDEREERWLDAGTWAIPTGLTIIIAVVLYAMIGLNHNEAAL 128 Query: 124 LVFKGNNVENIGKVLYTQYAYPLE 147 + + + +G VL+T+Y +E Sbjct: 129 IGGTTISAKAVGTVLFTKYIMLIE 152 >gi|313183874|ref|YP_004021717.1| NADH-plastoquinone oxidoreductase subunit 6 [Prunus persica] gi|309321486|gb|ADO65027.1| NADH-plastoquinone oxidoreductase subunit 6 [Prunus persica] Length = 176 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + I+ VV NPIYS FSL V + ++LL + FVA L++Y Sbjct: 7 IHDFLLVFLGSVLILGGMGVVLFTNPIYSAFSLGLVLVCISLFYILLNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK---RGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VGA+ V +F +M ++ + G I +I Sbjct: 67 VGAINVLIVFAVMFMNGSEYYKDLNLWTVGDGVTLPVCTSIFVLLMITITDTSWYGIIWT 126 Query: 120 ELSRLVFK---GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S + + +N + IG L T + P E ILL ++IGAI + + Sbjct: 127 TRSNQIIEQDLISNSQQIGIHLSTDFFLPFEFVSIILLAALIGAIAVARQ 176 >gi|29349470|ref|NP_812973.1| NADH dehydrogenase I subunit J [Bacteroides thetaiotaomicron VPI-5482] gi|253570160|ref|ZP_04847569.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6] gi|29341379|gb|AAO79167.1| NADH dehydrogenase I, chain J [Bacteroides thetaiotaomicron VPI-5482] gi|251840541|gb|EES68623.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6] Length = 170 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 7/170 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V ++F I++ + + AE K+ FL F + +I+ + + + Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKLKRSRFLAGLFTMVAGLAIILFIT---LKHNFLQT 120 Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 + LV N+ IG L + Y P E +LL +IG I++ + Sbjct: 121 TNLVPLEINIHTIGNALLSSDKYGYILPFEAISILLLACIIGGIMIARKR 170 >gi|32267093|ref|NP_861125.1| NADH dehydrogenase subunit J [Helicobacter hepaticus ATCC 51449] gi|32263145|gb|AAP78191.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449] Length = 173 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 92/169 (54%), Gaps = 4/169 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FYLFS + I+S +VVT + +Y++ +L + +G+F +L AEF+ ++ ++VY Sbjct: 2 FETIAFYLFSTLCIVSFLIVVTSKRILYAMTALASGMIFISGIFFVLDAEFLGVVQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 G+V+ + F +M D ++ E K + GI + + + + E Sbjct: 62 SGSVVALYAFAMMFFDTSKDIIESYKNEWVVCILCFGIAVVLVCIFGMPLLGSNLEAVAD 121 Query: 123 RL----VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + NN++ IG +++T+Y P EI+ F+LL++M+ I+L ++ Sbjct: 122 SQNLLNIAEMNNIQMIGYIIFTKYLIPFEIAAFMLLVAMVVGIILSIKR 170 >gi|139390402|ref|YP_001122999.1| NADH dehydrogenase ND6 [Aethionema cordifolium] gi|221272305|sp|A4QJG9|NU6C_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286195|dbj|BAF49824.1| NADH dehydrogenase ND6 [Aethionema cordifolium] Length = 176 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + S VV NPI+S FSL F V + L++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLLFGSLGVVLFPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M ++ D E + + I L S + S G + Sbjct: 67 VGAITVLIIFAVMFMN-DSEYSTDLNRWTVGDGITSVICTTILFSLISTILDTSWYGVIW 125 Query: 123 RLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 126 TTRLNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176 >gi|325610566|gb|ADZ36506.1| NADH dehydrogenase subunit 6 [Stewartia serrata] Length = 176 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 8/156 (5%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S V+ NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M + Sbjct: 22 GSLGVILFPNPIYSAFSLGLVFVCISFFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFM 81 Query: 78 D-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 + + S F+ ++ L + + + +N Sbjct: 82 NGSEYYKDFHLWTVGDGITSMVCTSIFVSLITTILDTSWYGIIWATKSNHILEQDL-ISN 140 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + IG L T + P E+ ILL+++IGAI + + Sbjct: 141 SQKIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176 >gi|156598041|gb|ABU85286.1| NADH-plastoquinone oxidoreductase subunit 6 [Cycas micronesica] Length = 180 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + N IYS SL V + L++LL A+FVA +++YVGAV V +F +M+++ Sbjct: 26 VVLLTNIIYSALSLGPVLVCISLLYILLNADFVAAAQILIYVGAVNVLIVFAVMLMN--N 83 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--------GNNVEN 133 + +G ++ L ++ ++ E+S NNV+ Sbjct: 84 QKYPNFVPLWTVGDGITLVVCTSLFCSLITIILNTSWSEISMTTKSNQILEQDLTNNVQR 143 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 IG L T + P E+ ILL++++GAI + R Sbjct: 144 IGAHLSTDFFLPFELLSIILLVALVGAITIARRE 177 >gi|258593442|emb|CBE69781.1| NAD(P)H-quinone oxidoreductase chain 6 (NAD(P)H dehydrogenase I, chain 6) (NDH-1, chain 6) [NC10 bacterium 'Dutch sediment'] Length = 170 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F+L + + +S LVV +N ++ +L+FAF A LF+LL AEF+A +++ Sbjct: 5 TVTHVVFFLMAAFTVGASLLVVLAKNIVHCAIALVFAFFGVAALFVLLDAEFLAAAQVLL 64 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVG + + LF IM+ I + IV + + Sbjct: 65 YVGGITILLLFAIMLTSRISAGGVKIMNE----QVGISAVVVLAIVGLLAYANLKGFPAM 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +N +IGK+L T Y P E+ +LL +M+GAI+L R R Sbjct: 121 VPPLTMADNTASIGKLLLTTYVLPFEVVSLLLLAAMVGAIILARRER 167 >gi|150251537|ref|YP_001312269.1| NADH dehydrogenase subunit 6 [Cycas taitungensis] gi|221272320|sp|A6H5P5|NU6C_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|149941587|dbj|BAF65011.1| NADH dehydrogenase subunit 6 [Cycas taitungensis] Length = 180 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + N IYS SL V + L++LL A+FVA +++YVGAV V +F +M+++ Sbjct: 26 VVLLTNIIYSALSLGPVLVCISLLYILLNADFVAAAQILIYVGAVNVLIVFAVMLMN--N 83 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--------GNNVEN 133 + +G ++ L ++ ++ E+S NNV+ Sbjct: 84 QKYPNFVPLWTVGDGITLVVCTSLFCSLITIILNTSWSEISMTTKSNQILEQDLTNNVQR 143 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 IG L T + P E+ ILL++++GAI + R Sbjct: 144 IGAHLSTDFFLPFELLSIILLVALVGAITIARRE 177 >gi|116009011|gb|ABJ52175.1| NADH dehydrogenase subunit 6 [Phyllostachys edulis] Length = 173 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 VV + NPIYS FSL + + ++LL + FVA+ L++YVGA+ V +F +M I Sbjct: 21 IGVVLLTNPIYSAFSLGLVLICISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMF--I 78 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNV 131 D K +G F ++ ++ ++ ++ + NNV Sbjct: 79 DGSEWSKNKNYWTIGDGFTSLVCITILFSLMTTILDTSWYGILWTTRSNQIVEQGLINNV 138 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + IG L T + P E+ ILL+S+IGAI + + Sbjct: 139 QQIGIHLATDFYLPFELISIILLVSLIGAITMARQ 173 >gi|124112063|ref|YP_001019164.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chlorokybus atmophyticus] gi|221272346|sp|Q19V56|NU6C_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|124012179|gb|ABD62195.2| subunit 6 of NADH-plastoquinone oxidoreductase [Chlorokybus atmophyticus] Length = 214 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 16/182 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q + ++ + VV + N +YS F L ++ AG++LLL A+FVA +++Y Sbjct: 7 VQKFSLFFLEGAVLVGALGVVLLPNILYSAFLLGGVLMSIAGIYLLLNADFVAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIE------VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 VGA+ V LF IM+++ + +G IG+ + + + + Sbjct: 67 VGAINVLILFAIMLVNKNDGRVAAGTSNSSGVTNNIIGLTCIGLAGFLIDMIVTTPWLPK 126 Query: 117 AEGELSRLVFKGNNVEN----------IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + L K ++ IG +++ + P E+ +LL++++GAIV+ R Sbjct: 127 GVAVATSLSAKADSTAAQTQLKGSISIIGLHIFSDFLLPFEVISLLLLVTLVGAIVIARR 186 Query: 167 HR 168 R Sbjct: 187 ER 188 >gi|99034365|ref|ZP_01314389.1| hypothetical protein Wendoof_01000807 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 143 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 93/146 (63%), Gaps = 8/146 (5%) Query: 56 MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 M+ L+VY+GAV V FLF++MMLDID R ++GF F +G + + +F++ Sbjct: 1 MMVLIVYIGAVAVLFLFVVMMLDIDY----IRLRQGFAKHFTLGAILCGVFFLIISFVIR 56 Query: 116 SAEGELSRLV-FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRRDIKR 173 S+ +S ++ + NNV+ IG +LYT Y Y +SG +LL++++GAI L L+ ++ +K+ Sbjct: 57 SSTLNISNVINYNANNVKAIGNLLYTDYMYAFHLSGILLLVAIVGAIALTLQDKKKGVKK 116 Query: 174 QDISKQLESNPDNSIVMVKVKSGKGI 199 Q++ KQL +S+ +VK K GKG+ Sbjct: 117 QNVLKQL--TQSSSVKLVKAKFGKGV 140 >gi|139389318|ref|YP_001123083.1| NADH dehydrogenase ND6 [Aethionema grandiflorum] gi|221272306|sp|A4QJQ3|NU6C_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286280|dbj|BAF49908.1| NADH dehydrogenase ND6 [Aethionema grandiflorum] Length = 176 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + S VV NPI+S FSL F V + L++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLLFGSIGVVLFTNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M ++ D E + + I L S + S G + Sbjct: 67 VGAITVLIIFAVMFMN-DSEYSTDLNRWTVGDGITSLICTTILFSLISTILDTSWYGVIW 125 Query: 123 RLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 126 TTRLNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176 >gi|225871977|ref|YP_002753431.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196] gi|225791616|gb|ACO31706.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196] Length = 172 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F +F + + ++ R+PI S SLI + A L+LLLGAEF+A ++VY Sbjct: 1 MHLVLFIIFGAFCVAGAINLLLQRHPINSALSLIVVMTSLAVLYLLLGAEFLAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F F+IM+L+ E + G ++++G A + F+ S + L Sbjct: 61 SGAIMVLFTFVIMLLNAGKE----ERTHGSRAAYWLGFPGAAALFALLTFIFLSHQPSLG 116 Query: 123 RLVFKGN--NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 V + + +VL+ P E++ ++L++++GA+ L Sbjct: 117 YAVLGPDMVGTGELSQVLFRNLLLPFEVTSVLILIAILGAVALARHTNEK 166 >gi|296133531|ref|YP_003640778.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermincola sp. JR] gi|296032109|gb|ADG82877.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermincola potens JR] Length = 164 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 86/165 (52%), Gaps = 4/165 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F++ + + + S+ ++V RN +S +I F+ A +L+L A+F+A + ++VY G Sbjct: 2 TIMFWVIAIITLGSALMMVMNRNIFHSALFMIVTFIGVAATYLMLQADFMAAVQVLVYGG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A+ +F +F IM+ + + ++ F + + A ++ + MV +S Sbjct: 62 AIAIFVVFGIMLT----QRGDMKQSNLFSKHAPLAAIVALALIVINGVMVLKTNWAVSNA 117 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V I +++ +Y P E++ +LL+++IGA+++ ++ Sbjct: 118 APPTETVGPIAELMLQKYVIPFEVAAILLLVALIGAVIIAKEVKK 162 >gi|268316804|ref|YP_003290523.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodothermus marinus DSM 4252] gi|262334338|gb|ACY48135.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodothermus marinus DSM 4252] Length = 170 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 2/167 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + L F+L + AI ++ ++ RNP+ S L+ AGL+L L A F+ +I +++Y Sbjct: 2 IAQLLFFLLAVTAIAAALGMLIARNPVSSALWLVLNLFCIAGLYLTLQASFLGVIQVLIY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGE 120 GA++V FLF+IM+L+++ + G + +F + +LA + V A V Sbjct: 62 AGAIMVLFLFVIMLLNLEALPHPRQIDWGKVLAFVVTMIVLAQLVYVVALGLDVLPTFVA 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + +G+ L T+Y PL++ G +LL + IGA++L R Sbjct: 122 TPEQAAVTGSAQALGRELLTRYIMPLQVIGILLLAATIGAVMLAKRR 168 >gi|219848529|ref|YP_002462962.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Chloroflexus aggregans DSM 9485] gi|219542788|gb|ACL24526.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chloroflexus aggregans DSM 9485] Length = 217 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 2/168 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+ + F + + ++++ +VV+VRN I+S LI F L++LL AEF+A++ ++V Sbjct: 3 VVVQIVFGIIALFILVAAVMVVSVRNVIHSALWLIACFFGVGALYMLLQAEFLAVVQVLV 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL--AAELIVCASNFMVFSAEG 119 YVGAV V LF IM+ + + I +L A + N Sbjct: 63 YVGAVSVLILFAIMLTRQISGEGVRQLTTRWPIVLAISVLLFATVMAPTLINQQWNVPPA 122 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +G+ ++ ++ G +L +++IGAIV+ Sbjct: 123 PPLGTPEPIAGPAELGRGFVNEFLLQFQVVGVLLTVALIGAIVIAFEE 170 >gi|197285612|ref|YP_002151484.1| NADH dehydrogenase subunit J [Proteus mirabilis HI4320] gi|227356115|ref|ZP_03840505.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis ATCC 29906] gi|194683099|emb|CAR43656.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis HI4320] gi|227163760|gb|EEI48672.1| NADH-quinone oxidoreductase chain J [Proteus mirabilis ATCC 29906] Length = 177 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 84/162 (51%), Gaps = 4/162 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ ++I+++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAGLISILATLRVITHTNPVHALLYLIVSLIGLSVVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSR 123 A++V F+F++MML++ V E +K + + + +++ + + S GE+S Sbjct: 62 AIMVLFVFVVMMLNLGKSVVEQERKWLQPRFWIGPAILSLVLLIVLVYAISSVTHGEISG 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + + +G L+ Y +E++ +LL +I A + Sbjct: 122 EIIGA---KEVGISLFGPYILAVELASVLLLSGLIVAYHIGR 160 >gi|323702658|ref|ZP_08114319.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfotomaculum nigrificans DSM 574] gi|323532321|gb|EGB22199.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfotomaculum nigrificans DSM 574] Length = 172 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 6/169 (3%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L S + + S+ LVVT++N ++SV LI F+ AG+FL+L A+FVA + ++VY GA Sbjct: 8 IAFVLLSGVVLGSALLVVTLKNLVHSVLWLIVTFIGTAGVFLMLEADFVAAVQVLVYAGA 67 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 V + +F +M++ + + P R + + +G+L + + A+ S Sbjct: 68 VCIMVVFGVMLVQRNEMGNSNPFNYRFRIAAPVVGVLFIII-----GLLTAKAQWVTSGA 122 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 V+ + +L + P E++ +L +++ GA+VL+ R R Sbjct: 123 GVPKKTVQALAPILLGDFMIPFEVAAILLTVALTGALVLVKEVRAHGDR 171 >gi|158604903|gb|ABW74727.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Campylobacter concisus 13826] Length = 178 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 1/164 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S FYLFS + ++S V +N + +V +L + + +F LLGAEF+ ++ +VVY Sbjct: 3 ESFAFYLFSALILVSFSFSVLCKNALNAVSALAAGMIFISAIFFLLGAEFLGVVQIVVYT 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-LS 122 GAV+V + F +M D E K+ + + + A L++ ++SA+ E ++ Sbjct: 63 GAVVVLYAFAMMFFDTSKECEPKSGKKAKIIVYLLSSFIALLLIFIFLAPIYSAKQEVVN 122 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + N+E +G +L+++Y E+ +LL++M+ I+L+ + Sbjct: 123 STLANLGNIEAVGILLFSKYLLAFEMCAIMLLVAMVAGIILIHK 166 >gi|13518490|ref|NP_084848.1| NADH dehydrogenase subunit 6 [Lotus japonicus] gi|23821907|sp|Q9BBP1|NU6C_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|13359031|dbj|BAB33248.1| NADH dehydrogenase ND6 [Lotus japonicus] Length = 176 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 8/172 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + I+ S VV + NPI+S FSL V + L++L + FVA L++ Sbjct: 6 TLHDFLLVFLGSGLILGSLGVVLLTNPIFSAFSLGLTLVCISLLYILSNSHFVAASQLLI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMV 114 YVGA+ V +F +M ++ + R S FI ++ + Sbjct: 66 YVGAINVLIIFGVMFMNGSEYYQDFRLWTVGDGMTLMVCTSIFISLITTIPDTSWYGIIW 125 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ + + IG L T + P E+ ILL ++IGAIV+ + Sbjct: 126 TTRSNQIIEQDLISTS-QQIGIHLSTDFFLPFELISIILLAALIGAIVVARQ 176 >gi|94968335|ref|YP_590383.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Candidatus Koribacter versatilis Ellin345] gi|94550385|gb|ABF40309.1| NADH dehydrogenase subunit J [Candidatus Koribacter versatilis Ellin345] Length = 166 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 2/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F+ F+ + + ++ ++PI S SL+ + AGLFLL+GAEFV I ++VY Sbjct: 2 LHEILFFFFAAGCVAGAINLLAQKHPINSALSLVVVMASLAGLFLLMGAEFVGAIQVIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IM+L+ +E K + + A LI S Sbjct: 62 AGAIMVLFVFVIMLLNAGVEEHTKSSKIAIVLGVPAAAIVATLITWILLHNEQSFTKVSI 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + IG +L+ Y P E++ ++L+ ++GA+VL + Sbjct: 122 GELHGTG--KEIGMLLFGPYLLPFEVTSVLVLIGIMGAVVLARKE 164 >gi|317046224|ref|YP_004072513.1| NADH dehydrogenase subunit 6 [Corynocarpus laevigata] gi|309252941|gb|ADO60361.1| NADH dehydrogenase subunit 6 [Corynocarpus laevigata] Length = 176 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + F I+ VV + N IYS FSL V A ++L + FVA L++Y Sbjct: 7 IHDFLLVFFGSGIILGGMGVVLLTNSIYSAFSLGLVLVCIALFYILSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M + +GS ++ + V N ++ ++ + Sbjct: 67 VGAINVLIIFAVMFM--KGSEYSKDFPLWTVGSGVTLLVCTSIFVSLINTILDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 125 WTTRSNQILEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAISVARQ 176 >gi|15150748|ref|NP_150414.1| NADH dehydrogenase subunit 6 [Pylaiella littoralis] gi|15147754|emb|CAC50855.1| NADH dehydrogenase subunit 6 [Pylaiella littoralis] Length = 222 Score = 110 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 22/208 (10%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + V + +NP+YS L+ F +G+ LLG EF+A++ L+VY GA Sbjct: 5 IIFLIITTLGVGLGIKVTSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------------- 112 + V LF++MMLDI K+ L + ++ + + N Sbjct: 65 IAVLVLFVVMMLDIKAIENPWSSKKISLVFYPGSLVLFCCLGWSYNVKEIGFLPSFTLSL 124 Query: 113 ---MVFSAEGELSRLVFKGNNVENI---GKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 V S + + ++ + +LY+ YA L I+G ILL++M+GAI L L+ Sbjct: 125 CKEKVESLYSSNNMWFVEFDSSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAISLTLQ 184 Query: 167 HRRDIKRQDISKQLESNPDNSIVMVKVK 194 + + + +QL +++ +K K Sbjct: 185 KKS---PESLYRQLGRESKHAVFSIKEK 209 >gi|85059571|ref|YP_455273.1| NADH dehydrogenase subunit J [Sodalis glossinidius str. 'morsitans'] gi|84780091|dbj|BAE74868.1| NADH dehydrogenase I subunit J [Sodalis glossinidius str. 'morsitans'] Length = 187 Score = 110 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 85/168 (50%), Gaps = 4/168 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FYL +A++++ V+T P++++ LI + + A +F LGA F + ++VY G Sbjct: 2 ELAFYLSGLVAVLATLRVITHTQPVHALLYLIISLLAIACVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI-GILAAELIVCASNFMVFSAEGELSR 123 A++V F+F++MML++ + + ++ +++ L+ +V + + ++ Sbjct: 62 AIMVLFVFVVMMLNMSVGRDKQECAWLRPRAWIGPALMSLVLLAILVRALVGAGDHGIAG 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + + +G L+ Y +E++ +LL ++ A L R ++ Sbjct: 122 DLIAA---KTVGIALFGPYVLAVELASMLLLAGLVVAFHLGRDERDNV 166 >gi|306841951|ref|ZP_07474629.1| NADH dehydrogenase subunit J [Brucella sp. BO2] gi|306287984|gb|EFM59392.1| NADH dehydrogenase subunit J [Brucella sp. BO2] Length = 129 Score = 110 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 4/129 (3%) Query: 75 MMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG---NN 130 MMLD+D E+ + +G+ IL ELI ++ M G+ + + N Sbjct: 1 MMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFAPKLGQGALPIPDVATRTN 60 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190 +G +LYT Y + +++G +LL++MIGAIVL +RH+ ++KRQ I Q+ P+ +I + Sbjct: 61 TAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVKRQSIPAQVARTPETAIEI 120 Query: 191 VKVKSGKGI 199 KV++GKGI Sbjct: 121 RKVETGKGI 129 >gi|21673602|ref|NP_661667.1| NADH dehydrogenase I, subunit 6 [Chlorobium tepidum TLS] gi|21646716|gb|AAM72009.1| NADH dehydrogenase I, subunit 6 [Chlorobium tepidum TLS] Length = 173 Score = 110 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 3/169 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FY+F+ + ++S+ VV +N IYS FSL+F F A L++ L A+F+A+ +VVYVG Sbjct: 7 AIIFYIFAAVTVLSAAFVVFSKNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V LF +M + + K L +L LIV + + Sbjct: 67 GILVLLLFGVMFTNT---IMSTELKADVLNVVPGILLTLLLIVGMLFTFYTTGSWMPGEM 123 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 G+ V++IG ++Y P E+ +LL++++GA L + + K Sbjct: 124 QLNGSVVQSIGLETMSRYMLPFEMFSIVLLVALLGAAYLARYDKANKKE 172 >gi|122894040|ref|YP_001004236.1| NADH-plastoquinone oxidoreductase subunit 6 [Ranunculus macranthus] gi|221272343|sp|A1XGT8|NU6C_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|85540854|gb|ABC70806.1| NADH-plastoquinone oxidoreductase subunit 6 [Ranunculus macranthus] Length = 177 Score = 110 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ VV + NPI+S FSL V + + + FVA L++Y Sbjct: 7 IHDFLLVFLGLGFIMGGLGVVLLTNPIFSAFSLGLVLVCTSLFYTPSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M ++ ++ +G ++ + V + ++ + Sbjct: 67 VGAINVLIIFAVMFMNGSEYYSDFHL--WTVGDGVTSLVCTSIFVSLITTIPDTSWYGIV 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 NN + IG L T + P E+ ILL+++IGAI + + Sbjct: 125 WTTRSNQIIEQDLINNSQQIGIHLSTDFFLPFELISIILLVALIGAISMARQ 176 >gi|65329286|gb|AAY42125.1| Nqo10 [Rhodothermus marinus] Length = 170 Score = 110 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 2/167 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + L F+L + AI ++ ++ RNP+ S L+ AGL+L L A F+ +I +++Y Sbjct: 2 IAQLLFFLLAVTAIAAALGMLIARNPVSSALWLVLNLFCIAGLYLTLQASFLGVIQVLIY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGE 120 GA++V FLF+IM+L+++ + G + +F + +LA + V A V Sbjct: 62 AGAIMVLFLFVIMLLNLEALPHPRQIDWGKVLAFVVTMIVLAQLVYVVALGLDVLPTFVA 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + + +G+ L T+Y PL++ G +LL + IGA++L R Sbjct: 122 TTEQAAVTGSAQALGRELLTRYIMPLQVIGILLLAATIGAVMLAKRR 168 >gi|153012162|ref|YP_001381677.1| NADH-plastoquinone oxidoreductase subunit 6 [Medicago truncatula] Length = 176 Score = 110 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 10/173 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + I+ S VV + NPI+S FSL V + L++L + FVA L++ Sbjct: 6 TLHDFLLVFLGSGIILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILSNSHFVAASQLLI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ + +F +M ++ + +G I+ + V + ++ + Sbjct: 66 YVGAINILIIFAVMFMNSSEYYQDFNL--WTVGDGITLIVCTSIFVSLITIISDTSWYGI 123 Query: 122 SRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + IG L T + P E+ ILL+++IGAIV+ + Sbjct: 124 IWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIVVARQ 176 >gi|71065159|ref|YP_263886.1| NADH dehydrogenase I, J subunit [Psychrobacter arcticus 273-4] gi|71038144|gb|AAZ18452.1| probable NADH dehydrogenase I, J subunit [Psychrobacter arcticus 273-4] Length = 239 Score = 110 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 79/144 (54%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + FY + +AI +S VVT NP++++ S+I + + AG+F ++GA F + +VVY Sbjct: 9 ELAGFYSLAAVAIFASLRVVTQANPVHAILSMIVSLLAIAGIFFVIGAPFAGALEIVVYA 68 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA++V F+F+IMML++ + E ++ G++ I +I M+ E + Sbjct: 69 GAIMVLFVFVIMMLNLGMRNDEREERWLDAGTWAIPTGLTIIIAVVLYAMIGLNHNEAAV 128 Query: 124 LVFKGNNVENIGKVLYTQYAYPLE 147 + + + +G VL+T+Y +E Sbjct: 129 IGGSTISAKAVGTVLFTKYIMLIE 152 >gi|226227059|ref|YP_002761165.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27] gi|226090250|dbj|BAH38695.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27] Length = 168 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 5/157 (3%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S +AI S+ L VT +NP+ + L+ AGL+++L A FV I ++VY GA++V F+ Sbjct: 13 SLLAIASALLFVTRKNPVPAALWLVNVMFALAGLYVMLDAPFVGTIQVLVYAGAIMVTFV 72 Query: 72 FIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 F++M+L++ EV++ R LGS +G+ ++ A + E +R N Sbjct: 73 FVVMLLNLGKTEVSDIRSLGTRLGSGVVGLALLANLLLALRQHIEVPEFSAAR----DNV 128 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 VE + L+T Y E++ +LL+++IGA+VL R Sbjct: 129 VEPVAAALFTDYLVAFELTSLVLLVAVIGAVVLAKRR 165 >gi|124360819|gb|ABN08791.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Medicago truncatula] Length = 176 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 10/173 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + I+ S VV + NPI+S FSL V + L++L + FVA L++ Sbjct: 6 TLHDFLLVFLGSGIILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILSNSHFVAASQLLI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ + F +M ++ + +G I+ + V + ++ + Sbjct: 66 YVGAINILITFAVMFMNSSEYYQDFNL--WTVGDGITLIVCTSIFVSLITIISDTSWYGI 123 Query: 122 SRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + IG L T + P E+ ILL+++IGAIV+ + Sbjct: 124 IWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIVVARQ 176 >gi|302035617|ref|YP_003795939.1| NADH-quinone oxidoreductase membrane subunit J [Candidatus Nitrospira defluvii] gi|300603681|emb|CBK40012.1| NADH-quinone oxidoreductase, membrane subunit J [Candidatus Nitrospira defluvii] Length = 174 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 91/173 (52%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +FF F+ ++I++ L V ++NP+ +L+ ++ +GLF+LL AEF+ + ++VY Sbjct: 1 MAFVFFAYFAVVSIVAGILTVALKNPVQCGLALLALLLHVSGLFVLLNAEFLWAVQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +LF++M+L++ + K +L + + LA L + + S + Sbjct: 61 AGAILVLYLFVLMLLNLKTDDRYFHAKAPYLLAPAVIGLAYLLFLLVRSPFGGSRGDAST 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 + + IG +++ Y EI G L +++GAIVL + R+D Sbjct: 121 AAILINGDAHAIGIKMFSDYLLQFEIIGVFLTGAIVGAIVLAKTPKSIETRRD 173 >gi|289608459|emb|CBI60588.1| unnamed protein product [Sordaria macrospora] Length = 184 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 88/147 (59%), Gaps = 3/147 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 +V+Q+L FYLF+ + + S+ L +T RNP++SV LI AF NAAGL +L GAEF+AM+ ++ Sbjct: 38 LVIQTLAFYLFATIVVASAALTITSRNPVHSVLWLILAFFNAAGLMVLCGAEFIAMLLVI 97 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS---A 117 VYVGAV V FLF++MMLDID R + +L A +V + + Sbjct: 98 VYVGAVAVLFLFVVMMLDIDFTELRAGFVRYLPAGLALAVLLAVELVVGAYAWTAARIDL 157 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAY 144 ++ N+E IG++LY++Y Y Sbjct: 158 AKRIAPTDVAVPNIEAIGRLLYSRYLY 184 >gi|156742069|ref|YP_001432198.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus castenholzii DSM 13941] gi|156233397|gb|ABU58180.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus castenholzii DSM 13941] Length = 217 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 2/165 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + ++ F +F+ + + S+ L VTV+N +++ LI +F L+LL+ AEF+ + +++ Sbjct: 3 TLITVLFLIFAALILASAILTVTVKNIVHAALWLISSFFGVGALYLLMEAEFLGVAQVLI 62 Query: 62 YVGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEG 119 YVGA+ + LF IM+ D++ R ++ L LIV + Sbjct: 63 YVGALSILILFAIMLTRDLEGSQNRQLTPRWWIALIVPAALFGLLIVPTVMTHAWQLPPP 122 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 + + + IG +Y E++ +L ++MIGAIV+ Sbjct: 123 PPTGQPPAISGAQQIGTAFMREYLLSFEVAAILLTVAMIGAIVIA 167 >gi|221633758|ref|YP_002522984.1| NADH dehydrogenase i subunit j [Thermomicrobium roseum DSM 5159] gi|221155857|gb|ACM04984.1| nadh dehydrogenase i chain j [Thermomicrobium roseum DSM 5159] Length = 241 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 4/148 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F L + ++++ + VV RNP++S L+ +F+N A ++L+ AEF+A++ ++ Sbjct: 1 MSLEVAVFSLLALVSVLGALGVVLARNPVHSAIGLVLSFLNVAAIYLVARAEFLAVVQVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 VY GA+IV +F+ M++ D E R R G L AE+ V A Sbjct: 61 VYAGAIIVLVVFVTMLVHPDDLPEFHGRRPLRLVTGLVLGAALLAEVAAAVLARGVRGAP 120 Query: 119 GELSR--LVFKGNNVENIGKVLYTQYAY 144 G + + G N +G+VLY Y Sbjct: 121 GPWTDEAVAAVGGNTRALGQVLYVDYML 148 >gi|194033199|ref|YP_002000538.1| NADH dehydrogenase subunit 6 [Brachypodium distachyon] gi|221272311|sp|B3TNA2|NU6C_BRADI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|193075607|gb|ACF08690.1| NADH dehydrogenase subunit 6 [Brachypodium distachyon] Length = 176 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 K +G F ++ ++ + ++ + NNV+ IG Sbjct: 90 --KNSWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+S+IGAI + + Sbjct: 148 LATDFYLPFELISIILLVSLIGAITMARQ 176 >gi|289548986|ref|YP_003473974.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis albus DSM 14484] gi|289182603|gb|ADC89847.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermocrinis albus DSM 14484] Length = 176 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 2/169 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ F FS A++ VV + NPIY + SL+ + ++ AG+F + GAE V + L++Y Sbjct: 1 MQWAAFGAFSLSALLFGLGVVLLPNPIYVILSLLASLISIAGVFFVAGAELVGALQLLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGE 120 A+ VF++F++ + + + + R G L + +L ++IV + S +GE Sbjct: 61 AVAITVFYVFVLTAVPWEKALKKDSHYRVEGALTFPLLLLLYGQVIVTFLLGVSVSPKGE 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + ++ N E +G +L+++Y E+ +LL+ M+GAI++ + R Sbjct: 121 IRNILKDLTNTEAVGVILFSKYFLAFELVSLVLLIGMLGAILIGRKEER 169 >gi|289474452|gb|ADC97839.1| NADH dehydrogenase subunit 6 [Muricea purpurea] Length = 155 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 17/160 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + I+ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVL 113 Query: 154 LLSMIGAIVLML----------RHRRDIKRQDISKQLESN 183 L++MIGAI+L + RQD+ Q+ Sbjct: 114 LVAMIGAILLAKQPNSPSLYNSHGKSLRSRQDLFLQISRE 153 >gi|219674001|ref|YP_002456485.1| NADH-plastoquinone oxidoreductase subunit 6 [Trifolium subterraneum] gi|193788970|gb|ACF20566.1| NADH-plastoquinone oxidoreductase subunit 6 [Trifolium subterraneum] Length = 176 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 8/172 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + I+ S VV + NPI+S FSL V + L++L + FVA L++ Sbjct: 6 TLHDFLLVFLGSGLILGSLGVVLLTNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLI 65 Query: 62 YVGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 YVGA+ + +F +M ++ S F+ ++ + Sbjct: 66 YVGAINILIIFAVMFVNSCEYYQDFHFWTVGDGITLIVCTSIFVSLITIIPDTSWYGIIW 125 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ + + IG L T + P E+ ILL+++IGAIV+ + Sbjct: 126 TTRPNQIIEQDLISTS-QQIGIHLSTDFFLPFELISIILLVALIGAIVVARQ 176 >gi|254457280|ref|ZP_05070708.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Campylobacterales bacterium GD 1] gi|207086072|gb|EDZ63356.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Campylobacterales bacterium GD 1] Length = 191 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 7/183 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FYLF+F+ I ++ VT +Y++ +L + + F +LGA+F+ + +VVY Sbjct: 2 FEAIAFYLFAFLTIAMFYITVTTSQALYALTALAAGMIFISAFFFILGADFLGAVQIVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+ + F +M D EV E + + I A +++ + +V L Sbjct: 62 SGAVMALYAFGMMFFDTTREVKEKNGNKYLVTGL-ATISAILVVLIFAAPIVGDNITALY 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + N + IG VL+T+Y P E++ +LL++M+ IVL K+ D+S L S Sbjct: 121 PVTEGAGNTQEIGIVLFTKYLVPFELAAVMLLVAMVSGIVLA------GKKMDLSLTLMS 174 Query: 183 NPD 185 + + Sbjct: 175 DAE 177 >gi|159106917|ref|YP_001531335.1| NADH-plastoquinone oxidoreductase subunit 6 [Lolium perenne] gi|221272331|sp|A8Y9E0|NU6C_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|158934451|emb|CAO86029.1| NADH-plastoquinone oxidoreductase subunit 6 [Lolium perenne] Length = 176 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 K +G F I+ ++ + ++ + NNV+ IG Sbjct: 90 --KNYWTIGDGFTSIVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+S+IGAI + + Sbjct: 148 LATDFYLPFELISIILLVSLIGAITMARQ 176 >gi|145298715|ref|YP_001141556.1| NADH dehydrogenase subunit J [Aeromonas salmonicida subsp. salmonicida A449] gi|142851487|gb|ABO89808.1| NADH dehydrogenase I, J subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 183 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FY + +A+ S+ V++ NP++++ +LI + + A +F LGA F + ++VY G Sbjct: 2 ELAFYAAALVAVYSTLRVISTSNPMHALLNLIISIIAVAMIFFCLGASFAGALQVIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ A+ +K + +L+ L+ + ++ G+L Sbjct: 62 AIMVLFVFVVMMLNLGSSEAQEKKWLTPMTWGGPALLSLILLGFLAYGILGVTGGQLG-- 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A L + Sbjct: 120 -LSDVSAKEVGIALFGPYVLAVELASILLLAGLVTAYHLGREDKSG 164 >gi|189095616|ref|YP_001936200.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. BAL208-1] gi|148540946|gb|ABQ86195.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. BAL208-1] Length = 183 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 7/163 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IM++ +V + +I + + S + + ++ Sbjct: 64 AILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIG 116 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 N+ IG LYT Y + ++ +LL++M+GAI+L + Sbjct: 117 SRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILLAKQPNT 159 >gi|269794082|ref|YP_003313537.1| NADH dehydrogenase subunit J [Sanguibacter keddieii DSM 10542] gi|269096267|gb|ACZ20703.1| NADH dehydrogenase subunit J [Sanguibacter keddieii DSM 10542] Length = 290 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 73/147 (49%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F+ + + ++++ ++ R +++ ++F V A +++ L A F+ ++ +VVY Sbjct: 6 EAVLFWCLAPLMVVAALGLLFARKAVHATLCVVFVMVCLAVMYVALEAPFLGIVQIVVYT 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV++ FLF+IM++ +D + RG ++ L ++ V EG Sbjct: 66 GAVMMLFLFVIMLVGVDASDSLVETIRGQRLVGWLLGLGLGAVLVGVILRVSFPEGIGLE 125 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISG 150 N I +VL+ + + LE+ G Sbjct: 126 AANAETNPVAIARVLFGDFVFNLEVVG 152 >gi|300114501|ref|YP_003761076.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Nitrosococcus watsonii C-113] gi|299540438|gb|ADJ28755.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus watsonii C-113] Length = 167 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 87/166 (52%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY+ + +A++S+ +V+T N ++++ LI + + A +F LLGA F A + +++Y G Sbjct: 2 EITFYIAAIIAVVSTIMVITRLNAVHALLYLIVSLLAVALIFFLLGAPFAAALEVIIYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F+IMML++ E + + + + +++ +++ + LS Sbjct: 62 AIMVLFVFVIMMLNLGKESVAQENRWFTPYLWLGPGILSFVLLIELVYLLATDSSALSS- 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++GA L + Sbjct: 121 -AEMITPQQVGVALFGPYLLAVELAAMLLLTGLVGAYHLGREEPEE 165 >gi|139389697|ref|YP_001123253.1| NADH dehydrogenase ND6 [Arabis hirsuta] gi|221272309|sp|A4QK73|NU6C_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286452|dbj|BAF50078.1| NADH dehydrogenase ND6 [Arabis hirsuta] Length = 176 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ VV + NPI+S FSL F V + L++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLIVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILANSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M ++ D E + L S + S G + Sbjct: 67 VGAINVLIIFAVMFMN-DSEYFTDFNLWTVGDGITSLVCTTLLFSLISTILDTSWYGVIW 125 Query: 123 RLVFK-------GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 126 TTRLNQILEQDLISNSQQIGSHLSTDFFLPFELISIILLVALIGAISVARQ 176 >gi|14017626|ref|NP_114311.1| NADH dehydrogenase subunit 6 [Triticum aestivum] gi|118430356|ref|YP_874790.1| NADH-plastoquinone oxidoreductase subunit 6 [Agrostis stolonifera] gi|23821900|sp|Q95H44|NU6C_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272307|sp|A1EA62|NU6C_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|13928259|dbj|BAB47088.1| NADH dehydrogenase ND6 [Triticum aestivum] gi|118201265|gb|ABK79634.1| NADH-plastoquinone oxidoreductase subunit 6 [Agrostis stolonifera] Length = 176 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 K +G F ++ ++ + ++ + NNV+ IG Sbjct: 90 --KNYWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+S+IGAI + + Sbjct: 148 LATDFYLPFELISIILLVSLIGAITMARQ 176 >gi|317130738|ref|YP_004097020.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus cellulosilyticus DSM 2522] gi|315475686|gb|ADU32289.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus cellulosilyticus DSM 2522] Length = 164 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 5/167 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + F + + +AI S LV+ +R + V S+ F F AGL+ LLGA+F+ +I ++ Sbjct: 1 MNTQMIIFLILAILAIACSVLVLQLRRISHRVVSMAFVFFAIAGLYFLLGADFIGIIQII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GAV + F+F +MM + +R FIG+ + + + Sbjct: 61 VYAGAVTILFIFGMMMTEHRNVTFSAHPRRAHRVLSFIGVATLLGFMLYGILGL-----D 115 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 L E IG LY Y GF+L ++IGAIV+ + Sbjct: 116 LPASEPYEGTAEAIGLELYGHYVVAFLAMGFLLTAALIGAIVIARKE 162 >gi|227497689|ref|ZP_03927898.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226832866|gb|EEH65249.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 286 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F + + + ++ ++T + + + ++I + A L++ A F+ + +VV Sbjct: 20 TGETILFAVVALVTVVCGIGLLTAKRAVSAAVNMIAIMIALAVLYIANEAPFLGITQIVV 79 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV+ LF++M++ + + EP G + +I L + +V+ + Sbjct: 80 YTGAVMTLVLFVVMLVGVGGD--EPVGSAGSPATKWIIALFGLGLAVLVAGVVWRTQFPD 137 Query: 122 SRLVFKGNNV--ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + +G ++ +L+ Q+ +E++G +L+++ GA+ L R R K Sbjct: 138 AAGLDQGQGAAPADLATLLFGQHVVAMELTGLLLIVAATGALTLTHRQRIRAK 190 >gi|330339541|ref|YP_004376741.1| NADH dehydrogenase subunit 6 [Corallium konojoi] gi|328750582|dbj|BAK18843.1| NADH dehydrogenase subunit 6 [Corallium konojoi] Length = 184 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 16/186 (8%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFIMISLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IM++ +V + +I + + S + + ++ Sbjct: 64 AILFLFVIMLIQQPNKVDYQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIG 116 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR---------HRRDIKRQDIS 177 N+ IG LYT Y + ++ +LL++M+GAI+L + H RQD+ Sbjct: 117 SRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILLAKQPSTPSLYDSHVETRSRQDLF 176 Query: 178 KQLESN 183 Q+ Sbjct: 177 LQISRK 182 >gi|306486042|gb|ADM92668.1| NADH-plastoquinone oxidoreductase subunit 6 [Davidia involucrata] Length = 176 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 + S F+ ++ L + + ++ +N + IG L Sbjct: 90 FHLWTVGDGVTSLVCTSIFVSLITTILDTSWYGIIWTTRSNQIMEQDL-ISNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFFLPFELISIILLVALIGAIAIARQ 176 >gi|317050800|ref|YP_004111916.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Desulfurispirillum indicum S5] gi|316945884|gb|ADU65360.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfurispirillum indicum S5] Length = 172 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L FY+ + S ++ RN + SV L+ F+ AG+F LL AEF+ ++ ++VY G Sbjct: 8 LVFYMLVVTILASGLAMIFTRNIVASVTCLVGTFLGVAGIFFLLNAEFIGVVQIMVYAGG 67 Query: 66 VIVFFLFIIMMLDI-DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + + +F IM+ D D EV P+ L + GIL +++ S ++ E Sbjct: 68 LSLLIIFAIMLTDPRDHEVDRPKSGNVMLAAAVSGILFIMMVIAISTAQWSFSDAEPLTT 127 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 IG +T Y P ++ +L +++ GAIVL + D K Sbjct: 128 QPAV----YIGIQYFTNYIVPFYLAAILLSMALTGAIVLAKKEGEDEK 171 >gi|192293782|ref|YP_001994421.1| NADH dehydrogenase subunit 6 [Acanella eburnea] gi|148964837|gb|ABR19859.1| NADH dehydrogenase subunit 6 [Acanella eburnea] Length = 183 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 7/163 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IM++ +V + +I + + S + + ++ Sbjct: 64 AILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIG 116 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 N+ IG LYT Y + ++ +LL +M+GAI+L + Sbjct: 117 SRTNIXAIGSHLYTTYYELVLVASLVLLXAMVGAILLAKQPNT 159 >gi|197121682|ref|YP_002133633.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. K] gi|220916478|ref|YP_002491782.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter dehalogenans 2CP-1] gi|196171531|gb|ACG72504.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. K] gi|219954332|gb|ACL64716.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter dehalogenans 2CP-1] Length = 211 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FY+ + + + + V RN +YS F L+ A + A L++LL A+FVA+ L++Y Sbjct: 47 LPDVLFYVLAVLTVAGAAGVALSRNILYSTFGLLTALLGAGALYVLLSADFVAVTQLLIY 106 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G V+V LF +M+ + E+ G G F + + AA +++ + + Sbjct: 107 IGGVLVLILFAVMLTNRITEINVSNTSFGLFGGFLLFVSAAPVLLAVALL----TPWQAG 162 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + IG +++ P E++ +LL +++GAIV+ + Sbjct: 163 PAAPLAPTTQAIGDAFLSRWLLPFEVASLVLLSTLVGAIVIARKE 207 >gi|238920559|ref|YP_002934074.1| NADH-quinone oxidoreductase subunit j [Edwardsiella ictaluri 93-146] gi|238870128|gb|ACR69839.1| NADH-quinone oxidoreductase subunit j [Edwardsiella ictaluri 93-146] Length = 190 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 84/166 (50%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + +A++++ V+T NP++++ LI + + A +F LGA F + ++VY G Sbjct: 2 EFAFYAAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E + G + L + +++ + + + +G + Sbjct: 62 AIMVLFVFVVMMLNLGHSVVEQERAWLRPGVWIGPALLSLILLAVVLYAISTLQGGFTD- 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E+ +LL ++ A + H Sbjct: 121 -GRAVDAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHHPG 165 >gi|154148356|ref|YP_001405798.1| NADH dehydrogenase subunit J [Campylobacter hominis ATCC BAA-381] gi|153804365|gb|ABS51372.1| NADH-quinone oxidoreductase, j subunit [Campylobacter hominis ATCC BAA-381] Length = 175 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 89/164 (54%), Gaps = 3/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FY FS +++ + V +N +Y++ +L + +GLF LGAEF+ ++ ++VY Sbjct: 2 FEIISFYFFSVLSLGLFAVSVFSKNVLYAMSALAGGMIFISGLFFTLGAEFLGVVQIMVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAVIV + F +M + + +V E ++ + I +I A + S + Sbjct: 62 TGAVIVLYGFSMMFFNANKDVKEAKENKIIYSLAVISAFLLVMIFVA---PILSDKISAY 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 ++ + +N+E IG V++T+Y E+ +LL++MI IVL+ + Sbjct: 119 PIIKELDNIEAIGLVIFTKYLIVFELVAIMLLVAMICGIVLVHK 162 >gi|118430440|ref|YP_874705.1| NADH-plastoquinone oxidoreductase subunit 6 [Hordeum vulgare subsp. vulgare] gi|126302578|sp|O98693|NU6C_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|118201094|gb|ABK79465.1| NADH-plastoquinone oxidoreductase subunit 6 [Hordeum vulgare subsp. vulgare] Length = 176 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 K +G F ++ + + ++ + NNV+ IG Sbjct: 90 --KNYWTIGDGFTSLVCITFVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+S+IGAI + + Sbjct: 148 LATDFYLPFELISIILLVSLIGAITMARQ 176 >gi|256831788|ref|YP_003160515.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Jonesia denitrificans DSM 20603] gi|256685319|gb|ACV08212.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Jonesia denitrificans DSM 20603] Length = 282 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F+ + + ++++ ++ R +++ S++F ++ A L++ A F+ + +VV Sbjct: 4 TAEAVLFWSLAPLMVLAAMGLLFARKAVHATISVVFVMISLAVLYVANEAPFLGIAQVVV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEG 119 Y GA+++ FLF+IM++ + + RG F+G F G LA L+ V G Sbjct: 64 YTGAIMMLFLFVIMLVGVGASDSLVETVRGQRFIGVLFAGGLAIILLAFLGRLTVGPGVG 123 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISG 150 + + +N I +VL + +PLE+ G Sbjct: 124 HEATVA---DNPTAIARVLLGNFVFPLELVG 151 >gi|56791558|gb|AAW30317.1| NADH dehydrogenase subunit 6 [Eichhornia crassipes] Length = 159 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 11/139 (7%) Query: 53 FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASN 111 F AMI VV++GA+ V FLF++MM +I I R S IG IL E+ N Sbjct: 21 FSAMIFPVVHIGAIAVSFLFVVMMFNIQIAEIHEXVLRYLPVSGIIGLILWWEMFFILDN 80 Query: 112 FMVFSAEGELSRL----------VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + + V N+E +G +LYT Y+ + ILL++MIGAI Sbjct: 81 ETIPLLPTHRNTTSLRYTVHAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAI 140 Query: 162 VLMLRHRRDIKRQDISKQL 180 VL + +KRQD+ ++ Sbjct: 141 VLTMHRTTKVKRQDVFRRN 159 >gi|290790821|gb|ADD63078.1| NADH-plastoquinone oxidoreductase subunit 6 [Potamophila parviflora] Length = 176 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++LL + FVA+ L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89 Query: 86 PRKK---RGFLGSFFIGILAAELIVCA-SNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139 GF I I + + +++ +++V +G NNV+ IG L Sbjct: 90 KNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLA 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+S+IGAI + + Sbjct: 150 TDFYLPFELISIILLVSLIGAITMARQ 176 >gi|290489864|gb|ADD31339.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Bulnesia arborea] Length = 176 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ S VV N +YS FSL + L++ + FVA L++Y Sbjct: 7 IHDFILVFLGSGLILGSLGVVLFSNSMYSAFSLGLVLFCISLLYISSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPR---KKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VGA+ V +F +M ++ + G I I + + Sbjct: 67 VGAINVLIIFAVMFMNNSEYSKNFNILTFRNGITSLVCISIFFSLVTTILDTSWYSIIWT 126 Query: 120 ELSRLVFK---GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S + + NN + IG L T + P E+ ILL+S+IGAI + + Sbjct: 127 TRSNHIIEQELINNSQQIGIHLSTDFFLPFELISIILLVSLIGAIAMARQ 176 >gi|296124099|ref|YP_003631877.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces limnophilus DSM 3776] gi|296016439|gb|ADG69678.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces limnophilus DSM 3776] Length = 239 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 90/176 (51%), Gaps = 11/176 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ L FY+ + A++ L+ T RNP+Y+ A + GLF++ A F+A +T++VY Sbjct: 59 VRDLLFYMAAGTAVLGGLLMTTQRNPVYAALWFAVATLGVCGLFVINSAPFLAAVTIIVY 118 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAEGE 120 GA++V F+F+IM+ + R + + +G ++ L+ F S+ Sbjct: 119 AGAIVVTFVFVIMLAQQEQGSGYDRIPQQPFLATVLGCLLVGTMLLGIEKTFGPESSRLS 178 Query: 121 LSRLVFKGNNV---------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + R +++ +G+ L+T Y + +E++G +LL++ IGAI + R Sbjct: 179 VDRTALHVSSLPVENDLGSPGGVGRSLFTDYLFAVELAGTVLLVATIGAIAIAPRR 234 >gi|237752483|ref|ZP_04582963.1| NADH oxidoreductase I [Helicobacter winghamensis ATCC BAA-430] gi|229375972|gb|EEO26063.1| NADH oxidoreductase I [Helicobacter winghamensis ATCC BAA-430] Length = 184 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 2/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FY+F + + +VVT +N +Y++ +L + + F LLGAEF+ ++ +VVY Sbjct: 2 FEAIAFYVFCALTLAMFLVVVTTQNILYALSALAAGMMFVSAFFFLLGAEFLGVVQIVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEGE 120 GAVI + F +M D E + F S +L ++V ++ Sbjct: 62 TGAVIALYAFAMMFFDAQKLENEKVQSPKMLFFLSGMGALLLVLIVVAPVIAENLASLQA 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 + + + NV+ +G VL+T++ P EI+ +LL++MI IVL Sbjct: 122 TTPIKEEIGNVQMVGYVLFTKFLIPFEIAAVMLLVAMIAGIVLA 165 >gi|170784789|ref|YP_001718705.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum] gi|170784796|ref|YP_001718712.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum] gi|221272393|sp|A9QC80|NU6C_TRACE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|156598841|gb|ABU85673.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum] gi|157267537|gb|ABV26530.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum] gi|157267544|gb|ABV26537.1| NADH-plastoquinone oxidoreductase subunit 6 [Trachelium caeruleum] Length = 176 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 6/151 (3%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VV + NPIYS FSL V + L++L + F+A L++YVGA+ V +F +M L+ Sbjct: 26 VVLLPNPIYSAFSLGLVLVCISLLYILSNSHFLAAAQLLIYVGAINVLIIFAVMFLNGSE 85 Query: 82 --EVAEPRKKRGFLGSFFIGILAAELIVCA--SNFMVFSAEGELSRLVFKG--NNVENIG 135 + P + S L A LI +++ + ++++ + NN + IG Sbjct: 86 YYKDLNPWTVGDGVTSVVCTSLFASLITTIPDTSWYGIIWTTKSNQIIEQDLINNSQEIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 146 IHLSTDFLIPFELISIILLVALIGAIAVARQ 176 >gi|13518395|ref|NP_084754.1| NADH dehydrogenase subunit 6 [Oenothera elata subsp. hookeri] gi|169142762|ref|YP_001687189.1| NADH dehydrogenase subunit 6 [Oenothera argillicola] gi|169142912|ref|YP_001687335.1| NADH dehydrogenase subunit 6 [Oenothera glazioviana] gi|169142997|ref|YP_001687419.1| NADH dehydrogenase subunit 6 [Oenothera biennis] gi|169143083|ref|YP_001687503.1| NADH dehydrogenase subunit 6 [Oenothera parviflora] gi|22256938|sp|Q9MTH9|NU6C_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272335|sp|B0Z4S8|NU6C_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272336|sp|B0Z512|NU6C_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272337|sp|B0Z596|NU6C_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272338|sp|B0Z5I0|NU6C_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|6723812|emb|CAB67223.1| NADH dehydrogenase subunit 6 [Oenothera elata subsp. hookeri] gi|159793000|gb|ABW98756.1| NADH dehydrogenase subunit 6 [Oenothera argillicola] gi|159793170|gb|ABW98924.1| NADH dehydrogenase subunit 6 [Oenothera biennis] gi|159895524|gb|ABX10089.1| NADH dehydrogenase subunit 6 [Oenothera glazioviana] gi|159895609|gb|ABX10173.1| NADH dehydrogenase subunit 6 [Oenothera parviflora] Length = 176 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ VV + NPI+S FSL V + F L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V LF +M ++ + + S FI ++ L + Sbjct: 67 VGAINVLILFAVMFMNGSEYSKDLTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ G N + IG L T + P E+ ILL+S+IGAI + + Sbjct: 127 TKSNQIIEQDLIG-NSQQIGIHLSTDFFLPFELISIILLVSLIGAIAVARQ 176 >gi|117620263|ref|YP_856310.1| NADH dehydrogenase subunit J [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561670|gb|ABK38618.1| NADH-quinone oxidoreductase chain j [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 182 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FY + +AI S+ V++ NP++++ +LI + + A +F LGA F + ++VY G Sbjct: 2 ELAFYAAALVAIYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGASFAGALQVIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + G+L+ L+ + ++ GEL Sbjct: 62 AIMVLFVFVVMMLNLGSAQDQEKNWLTPTTWVGPGLLSLILLGFLAYGILGVTGGELG-- 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G L+ Y +E++ +LL ++ A L + Sbjct: 120 -LTDVSAKAVGIALFGPYVLAVELASILLLAGLVTAYHLGREDKSG 164 >gi|4150871|emb|CAA09814.1| ndhG protein [Hordeum vulgare subsp. vulgare] Length = 176 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F+ ++ + VV + NPIYS FSL V + + LL + FVA+ L++Y Sbjct: 7 IHEILMLFGGFILLLGALGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M ++ + K +G F ++ + + ++ + Sbjct: 67 VGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTSLVCITFVFSLMTTIPDTSWYGIL 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 NNV+ IG L T + P E+ ILL+S+IGAI + + Sbjct: 125 WTTRSNQIVEQGLINNVQQIGIHLATDFYLPFELISIILLVSLIGAITMARQ 176 >gi|297563976|ref|YP_003682949.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848425|gb|ADH70443.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 349 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 81/183 (44%), Gaps = 4/183 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F++ + ++ + VV R ++S S+ V A + + A F+ ++ +VVY Sbjct: 27 EATAFWILGAVVLLGALGVVFSRKAVHSAMSMALTMVGLAIFYGINAAPFLMVVQIVVYT 86 Query: 64 GAVIVFFLFIIMMLDIDIEVA--EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV++ FLF++M++ + + E + + + L + V G Sbjct: 87 GAVLMLFLFVLMLIGVSSADSLVETLSGQRLMTAVVALCFVGALTTGITRIAVGDPVGLT 146 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 G + I L +Y E +G +L+ +++GA+VL R K++ +++ Sbjct: 147 EGAAAAGGTIPWIAGELLLRYVVAFEATGALLITAVLGAMVLAHTART--KKRRTQREIA 204 Query: 182 SNP 184 + Sbjct: 205 EDR 207 >gi|219669762|ref|YP_002460197.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfitobacterium hafniense DCB-2] gi|219540022|gb|ACL21761.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfitobacterium hafniense DCB-2] Length = 170 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 90/165 (54%), Gaps = 4/165 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 M ++ F++F+ +A+ S++ VVT +N ++S F L +F A L++LL AE++A + L+V Sbjct: 3 TMATIVFFIFAIIAVASAWGVVTSKNIVHSAFFLALSFAGVAVLYVLLNAEYLAAVQLLV 62 Query: 62 YVGAVIVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 Y GA+ + +F +M+ L D+ + P K+ G+ ++ IV A + S Sbjct: 63 YAGAISIMVIFAVMLTLRGDVAESSPVTKKWTQGALVSALVF---IVLALVILTNSDWRI 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 L+ G + K+L + Y P E + ++ +++IGA+++ Sbjct: 120 LAMPALAGGTTVELSKLLLSWYMVPFEAAAILITVALIGAVIIAK 164 >gi|297585411|ref|YP_003701191.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus selenitireducens MLS10] gi|297143868|gb|ADI00626.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus selenitireducens MLS10] Length = 165 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 4/167 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q +FF + + +AI + +++ + + V S+ F+F AGL+ LLGAEF+ +I ++ Sbjct: 1 MTAQMIFFTILALIAITGAVMMMLLTTISHRVVSMWFSFFAVAGLYFLLGAEFIGIIQIM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGA+ + F+F +MM D E + IG ++A ++ + +FS + Sbjct: 61 VYVGAITILFVFGMMMTDHKTVSFEKDPR---TAHNVIGTISAVGVLGILLYGIFSMD-L 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + V IG LY Y F+L ++IGAIV+ + Sbjct: 117 PGNAQPEVTTVHAIGMDLYGHYFVAFIAVAFLLTAALIGAIVIARKE 163 >gi|289066874|ref|YP_003434392.1| NADH-plastoquinone oxidoreductase subunit 6 [Vigna radiata] gi|259020061|gb|ACV90259.1| NADH-plastoquinone oxidoreductase subunit 6 [Vigna radiata] Length = 176 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 8/172 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + I+ S VV NPI+S FSL V + ++L + FVA L++ Sbjct: 6 SLHDFILIFLGSGLILGSLGVVFFTNPIFSAFSLGLVLVCVSLFYILSNSHFVAASQLLI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMV 114 YVGA+ V +F +M ++ R S F+ + L + Sbjct: 66 YVGAINVLIIFAVMFMNGSDYYQNFRVWTVGDGITLMVCTSIFLSQITTILDTSWHGIIW 125 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ + + IG L T + P E+ ILL+++IGAI + + Sbjct: 126 TTRPNQILEQDLISTS-QQIGIHLSTDFFLPFELISIILLVALIGAIFVARQ 176 >gi|257459157|ref|ZP_05624276.1| NADH-quinone oxidoreductase, j subunit [Campylobacter gracilis RM3268] gi|257443542|gb|EEV18666.1| NADH-quinone oxidoreductase, j subunit [Campylobacter gracilis RM3268] Length = 175 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 3/165 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q+L FY FS + + + V +N +Y++ +L V +G F LL AEF+ ++ ++VY Sbjct: 2 IQTLAFYFFSAVCLALFGISVFSKNVLYALSALAGGMVFMSGFFFLLDAEFLGVVQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAVIV + F +M L D V EP+K + I +I+ + A + Sbjct: 62 TGAVIVLYGFALMFLGADKNVNEPKKGARLFFALSGVIAFLLVIIALGAVV---ANNVET 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + ++ E +G +++T+Y E++ +LL++MI AIVL + Sbjct: 119 LKILNTDDTEALGMIIFTKYLAIFELAAVMLLVAMICAIVLAHKQ 163 >gi|227535962|ref|ZP_03966011.1| possible NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|300771668|ref|ZP_07081543.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium spiritivorum ATCC 33861] gi|227244205|gb|EEI94220.1| possible NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|300761657|gb|EFK58478.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium spiritivorum ATCC 33861] Length = 167 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 89/165 (53%), Gaps = 2/165 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY +F++I + + + +NP++SV L+ F ++LL A+F+A++ +VY+GA+ Sbjct: 3 IFYFVAFLSIFFALMTIFTKNPVHSVLYLVITFFTFTVHYILLNAQFLAVVNFIVYMGAI 62 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V FLF++M+L+++ E + G + L+V + + + Sbjct: 63 MVLFLFVLMLLNLNKESEP--MRSGVVKVMGAVAGMCLLVVVLGSLRIIEIDNGDVVAQP 120 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 V+ +G+VL+ ++ P EIS +LL +M+GA++L + + + Sbjct: 121 SIGLVKQLGEVLFDKFLLPFEISSILLLTAMVGAVLLAKKDTKKV 165 >gi|289065142|ref|YP_003434028.1| NADH-plastoquinone oxidoreductase subunit 6 [Typha latifolia] gi|281371825|gb|ADA63752.1| NADH-plastoquinone oxidoreductase subunit 6 [Typha latifolia] Length = 176 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L A FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYSKD 89 Query: 86 PRKKRGFLG--SFFIGILAAELIVCA--SNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139 G S + LI +++ + ++++ + NNV+ IG L Sbjct: 90 SYLWTIGDGGTSLICTTILFSLITTIPDTSWYGIIWTTKSNQIIEQDLINNVQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+S+IGAI + + Sbjct: 150 TDFYLPFELVSIILLVSLIGAITMARQ 176 >gi|330339526|ref|YP_004376727.1| NADH dehydrogenase subunit 6 [Paracorallium japonicum] gi|328750567|dbj|BAK18829.1| NADH dehydrogenase subunit 6 [Paracorallium japonicum] Length = 184 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 16/186 (8%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFIIISLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + FLF+IM++ +P K S F+ + +I + + S + + ++ Sbjct: 64 AILFLFVIMLIQ------QPNKVYYQDHSHFLPV-GLSVIFLFYSLLTNSPKYISNPVIG 116 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI---------KRQDIS 177 N+ IG LYT Y + ++ +LL++M+GAI+L + RQD+ Sbjct: 117 SRTNIGAIGSHLYTTYYELVLVASLVLLVAMVGAILLAKQPNTPSLYDSHVEIRSRQDLF 176 Query: 178 KQLESN 183 Q+ Sbjct: 177 LQISRK 182 >gi|289474437|gb|ADC97829.1| NADH dehydrogenase subunit 6 [Alaskagorgia sp. USNM 1115602] Length = 155 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 17/160 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + I+ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVL 113 Query: 154 LLSMIGAIVLML----------RHRRDIKRQDISKQLESN 183 L++MIGAI+L RQD+ Q+ Sbjct: 114 LVAMIGAILLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 153 >gi|255533954|ref|YP_003094326.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter heparinus DSM 2366] gi|255346938|gb|ACU06264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter heparinus DSM 2366] Length = 165 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 2/166 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY + +++I S LV+ +NP++SV LI F ++LL A+F+A++ +VY Sbjct: 1 MGTSVFYFVAALSVIFSLLVIFSKNPVHSVLYLIVTFFTFTVHYVLLNAQFLAVVNFIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +GA++V FLF++M+L+++ + K G + + L+ A + + Sbjct: 61 MGAIMVLFLFVLMLLNLNKDNEP--LKSGLVKVVGVIAGCCLLVTLAGALKATALSDPVV 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 V+++GK L+ + P E+ +LL +M+GAI+L + + Sbjct: 119 LRNPNLGLVKSLGKELFGPFMLPFELCSILLLSAMVGAILLTKKEK 164 >gi|83815364|ref|YP_445567.1| NADH dehydrogenase i, j subunit [Salinibacter ruber DSM 13855] gi|83756758|gb|ABC44871.1| NADH dehydrogenase i, j subunit [Salinibacter ruber DSM 13855] Length = 207 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 92/162 (56%), Gaps = 1/162 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F+L + +A+ ++ ++ RNP+ S L+ AGL+L L A F+ +I ++VY GA+ Sbjct: 44 MFFLLATVAVAAALGMIIARNPVSSALWLVLNLFCIAGLYLTLNASFIGVIQILVYAGAI 103 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRLV 125 +V FLF+IM+L++ + +G F +G +L ++L+ + + + Sbjct: 104 MVLFLFVIMLLNLSALPELEEIEWASIGGFAVGLVLLSQLLYVVALQFELGVDPIGAEAA 163 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + ++G++L+T+YA L+++G +LL + +GA++L R Sbjct: 164 AEAGSAASLGEILFTRYALHLQVAGILLLAATVGAVLLAQRR 205 >gi|114329710|ref|YP_740530.1| NADH-plastoquinone oxidoreductase subunit 6 [Citrus sinensis] gi|122166138|sp|Q09MC3|NU6C_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|113952676|gb|ABI49074.1| NADH-plastoquinone oxidoreductase subunit 6 [Citrus sinensis] Length = 178 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 8/150 (5%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84 NPIYS FSL V + ++L + FVA L++YVGAV V +F +M ++ Sbjct: 29 FTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSK 88 Query: 85 EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGK 136 + + +G ++ + ++ ++ + +N + IG Sbjct: 89 DFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGI 148 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 149 HLSTDFFLPFELVSIILLVALIGAIAVARQ 178 >gi|255535804|ref|YP_003096175.1| NADH-ubiquinone oxidoreductase chain J [Flavobacteriaceae bacterium 3519-10] gi|255342000|gb|ACU08113.1| NADH-ubiquinone oxidoreductase chain J [Flavobacteriaceae bacterium 3519-10] Length = 164 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F+ + +A+ S+ V RNP+Y++ +LI F + A +++LL A+F+ ++ ++VY Sbjct: 1 MEQVIFFSVAAIALASAVYFVIARNPLYAILALIVTFFSIAAMYILLNAQFLGIVQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FL+I+MML+++ A+ KK+ + I + + Sbjct: 61 AGAIMVLFLYILMMLNLNR--ADESKKQNLTKFIGVFAACILFIGLLGAYKGLGTGTYGT 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +N+G++L+ +Y P E++ ++L ++GA+++ + Sbjct: 119 GVDSSIGLTKNLGRLLFNEYVLPFELASILILAGIVGAVLIGKK 162 >gi|34500967|ref|NP_904152.1| NADH dehydrogenase subunit 6 [Amborella trichopoda] gi|75275903|sp|Q70XW1|NU6C_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|34481682|emb|CAD45159.1| NADH dehydrogenase ND6 subunit [Amborella trichopoda] Length = 177 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 8/172 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + I+ S VV + NPIYS FS V + +L + FVA L++Y Sbjct: 7 IHDILLVSLGSGIILGSLGVVLLTNPIYSAFSSGLVLVRISLFHILSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V +F +M + + + S ++A L + Sbjct: 67 VGAINVLIIFAVMFMNGSEYYNNFHLWTVGDGISSVVCTSILFSLIATILDTSWYGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + ++ +NV+ IG L T + P E+ ILL++++GAI + Sbjct: 127 TRSNQIIEQDLT-SNVQQIGIHLSTDFFLPFELISIILLVALVGAIAMARAE 177 >gi|298346127|ref|YP_003718814.1| NADH dehydrogenase subunit J [Mobiluncus curtisii ATCC 43063] gi|304390113|ref|ZP_07372067.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236188|gb|ADI67320.1| NADH dehydrogenase subunit J [Mobiluncus curtisii ATCC 43063] gi|304326595|gb|EFL93839.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 324 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q++F S +A+I++ V +++ ++ V AG++ +GAEF+ + +VV Sbjct: 16 TGQTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF+IM++ + + K G + + + ++A ++ + + G Sbjct: 76 YTGAIMMMFLFVIMLVGVQAVDSPRDSKVGTVAAAVLLVVAFGIMAIVAAVNT-TVNGAP 134 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +R N V +V+ T YA PLE+ +L+++ +GA+ L Sbjct: 135 ARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSLTHSE 179 >gi|256422827|ref|YP_003123480.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga pinensis DSM 2588] gi|256037735|gb|ACU61279.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chitinophaga pinensis DSM 2588] Length = 172 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 90/168 (53%), Gaps = 2/168 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FYL S +AII++ +V+T +PI+++ L+ +F+ A +FL LGA F A + ++VY GA Sbjct: 3 ILFYLSSAVAIIATMMVITRYHPIHALLYLVVSFLAIAMVFLSLGAPFAAALEVIVYAGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F+F++MML++ E A K + + +++ + ++ + + Sbjct: 63 IMVLFIFVVMMLNLGKETAAQEKDWLRPAVWIGPGILTLILLMEMSILLLAPP--QRDVA 120 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + LY +Y +E+ GF+L ++GA + + ++ + R Sbjct: 121 MAVVTPRQVALSLYGEYIIAVELIGFLLTTGIVGAAHIGKQKKKSLHR 168 >gi|313156921|gb|EFR56359.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Alistipes sp. HGB5] Length = 169 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 8/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++ + F + + +S+ L VT + + + L+F AG++ L F+ + L+ Sbjct: 3 ITLELIVFTVLAVFTAVSALLAVTTKRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y G + V ++F I++ + +E K F F+G+ A L + ++ + Sbjct: 63 IYAGGITVLYVFSILLTSSQGDKSEDLKGYKF----FVGLAATLLSLGVCLYVTLGHDFR 118 Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 S V +V+ IG L + Y P E+ +LL ++G I++ + Sbjct: 119 PSHFVHGELHVQTIGHALMSSGKYGYVLPFEVISILLLACIVGGILIARKR 169 >gi|330830053|ref|YP_004393005.1| NADH dehydrogenase I subunit J [Aeromonas veronii B565] gi|328805189|gb|AEB50388.1| NADH dehydrogenase I, J subunit [Aeromonas veronii B565] Length = 183 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FY + +AI S+ V++ NP++++ +LI + + A +F LGA F + ++VY G Sbjct: 2 ELAFYASALVAIYSTLRVISTSNPMHALLNLIISLIAVAMIFFCLGAAFAGALQVIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ A+ +K + +L+ L+ ++ ++ G + Sbjct: 62 AIMVLFVFVVMMLNLGSAQAQEKKWLTPMTWGGPALLSLILLGFLAHGILGVTGGLIG-- 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + +G L+ Y +E++ +LL ++ A L + Sbjct: 120 -VTEVTAKQVGVELFGPYVLAVELASILLLAGLVTAYHLGREEKSG 164 >gi|226327873|ref|ZP_03803391.1| hypothetical protein PROPEN_01754 [Proteus penneri ATCC 35198] gi|225203577|gb|EEG85931.1| hypothetical protein PROPEN_01754 [Proteus penneri ATCC 35198] Length = 277 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 83/157 (52%), Gaps = 4/157 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ L+ + + + +F LGA F + ++VY G Sbjct: 2 EFAFYIAGLIAILATLRVITHTNPVHALLYLVISLIALSVVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSR 123 A++V F+F++MML++ V + +K + L + +++ + + S GE++ Sbjct: 62 AIMVLFVFVVMMLNLGKSVVDQERKWLQPKFWIGPALLSLMLLVVLIYAISSVTHGEITG 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 + + +G L+ Y +E++ +LL +I A Sbjct: 122 EIIGA---KEVGISLFGPYILAVELASVLLLSGLIVA 155 >gi|114177209|gb|ABI53762.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ10101] Length = 235 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 100/223 (44%), Gaps = 60/223 (26%) Query: 4 QSLFFYLFSFMAIISSFLVVT---------------VRNPIYSVFSLIFAFVNAAGLFLL 48 + + F + S + +I++ + + N + SVF LI F+ ++GLF++ Sbjct: 8 EDILFIILSSITVIAAIMTIRGGIGNPTTTAVTPTNTNNFLTSVFWLILTFIGSSGLFIV 67 Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF----LGSFFIGILAAE 104 LG EF+ +I L+VYVGA+ + FLF+IMM+ + E + + +G GILAAE Sbjct: 68 LGMEFLGLIFLIVYVGAICIIFLFVIMMIPGEKERKKGEETGRIGTPAIGILIGGILAAE 127 Query: 105 LIVCASNFMVFSAEGE-----------------------------------------LSR 123 L + ++ + E L+ Sbjct: 128 LASAVPDSIIKNYELTNILSDRNRDKSGLIGSEKESITTGIKNNIETGYPYDYFDYFLTL 187 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 G N+E IGKVLY Y Y + FILL++MIGAIVL L+ Sbjct: 188 NGSGGTNMEAIGKVLYINYYYAFILVSFILLVAMIGAIVLGLQ 230 >gi|330850678|ref|YP_004376559.1| NADH-plastoquinone oxidoreductase subunit 6 [Ptilidium pulcherrimum] gi|302024807|gb|ADK89653.1| NADH-plastoquinone oxidoreductase subunit 6 [Ptilidium pulcherrimum] Length = 206 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 14/182 (7%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 I+ S VV + + +YS F L F F A L+LLL ++FVA +++YVGA+ V +F + Sbjct: 19 LILGSLGVVLLNDIVYSAFLLGFVFACVALLYLLLDSDFVAAAQVLIYVGAINVLIVFAV 78 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL--------SRLVF 126 M+++ + + +G + + + +N + ++ ++ + + Sbjct: 79 MLINKNNPII--FFLVWTIGDGITSAICTSIFLLLNNTISNTSWSKIYLVAQLNKNTELI 136 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186 N+ IG L T++ P E+ ILL+++IGAI L R + ++ +++ N +N Sbjct: 137 TTENIRRIGLELLTKFLIPFELMSIILLIALIGAITLA----RGEQVINLEEEVLRNKNN 192 Query: 187 SI 188 SI Sbjct: 193 SI 194 >gi|315657370|ref|ZP_07910252.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491842|gb|EFU81451.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 324 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q++F S +A+I++ V +++ ++ V AG++ +GAEF+ + +VV Sbjct: 16 TGQTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF+IM++ + + K G + + + ++A ++ + + G Sbjct: 76 YTGAIMMMFLFVIMLVGVQAVDSPRDSKVGTVAAAVLLVVAFGIMAIVAAVNT-TVNGAP 134 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +R N V +V+ T YA PLE+ +L+++ +GA+ L Sbjct: 135 ARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSLTHSE 179 >gi|162452498|ref|YP_001614865.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|161163080|emb|CAN94385.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 212 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + FF L S + ++ V RNPI L+ + V AGL+L+L AEF+A I ++V Sbjct: 3 IFEFAFFGLASLLVLLGGLATVAARNPIRGAMGLLTSIVGIAGLYLMLSAEFLAAIQILV 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF+IM+L + + G+L A I + S G L Sbjct: 63 YAGAIVILFLFVIMLLGP-SATSPRDARTAVPRYVGAGVLGASSIGALALVASASKPGVL 121 Query: 122 SRLVFKGN--NVENIGKVLYTQYAYPLEISGFILL 154 + + +E +G L+T+ P E+SG +LL Sbjct: 122 AVPAAPESLGTIEGLGHELFTKGIVPFELSGALLL 156 >gi|238927263|ref|ZP_04659023.1| NADH dehydrogenase (ubiquinone) subunit J [Selenomonas flueggei ATCC 43531] gi|304437253|ref|ZP_07397213.1| NADH-quinone oxidoreductase subunit J [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|238884850|gb|EEQ48488.1| NADH dehydrogenase (ubiquinone) subunit J [Selenomonas flueggei ATCC 43531] gi|304369745|gb|EFM23410.1| NADH-quinone oxidoreductase subunit J [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 164 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S FY + + II + VV N ++S L+ +F+ A ++ +GAEF+ + L+VY G Sbjct: 2 SFIFYFLAAVTIIGALGVVLSPNVVHSALFLVLSFIGVAAIYFYIGAEFLGAVQLMVYSG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV V + IM+ D +A+ + G+LA + +V + + Sbjct: 62 AVAVLIVMAIMLTRRD-SMAQSNPSQKLFRRVVTGLLAGSIFFLIGCGIVLAP--LPAGE 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + I +++ Y P E++ +LL +M+GA++L Sbjct: 119 FAASTGADEIAQLMLGTYLVPFEVTAVLLLAAMVGALLLAR 159 >gi|307721741|ref|YP_003892881.1| NADH dehydrogenase subunit J [Sulfurimonas autotrophica DSM 16294] gi|306979834|gb|ADN09869.1| NADH dehydrogenase subunit J [Sulfurimonas autotrophica DSM 16294] Length = 188 Score = 107 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 87/165 (52%), Gaps = 1/165 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FYLF+F+ I ++ VT + +Y++ +L + + F +LGA+F+ + ++VY Sbjct: 2 FEAVAFYLFAFLTIAMFYITVTTKQALYALTALAAGMIFISAFFFILGADFLGAVQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+ + F +M D EV E + + + + A +++ + MV L Sbjct: 62 TGAVMALYAFGMMFFDTTREVKEKQGNKYIIVGLST-LAAVLVVIIFAAPMVSENIVALY 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + N + +G VL+T+Y P E++ +LL++M+ IVL + Sbjct: 121 PAIDGVGNTQEVGLVLFTKYLIPFEVAAIMLLVAMVAGIVLAGKK 165 >gi|115605073|ref|YP_784525.1| NADH-plastoquinone oxidoreductase subunit 6 [Piper cenocladum] gi|122164316|sp|Q06GK8|NU6C_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|112253802|gb|ABI14523.1| NADH-plastoquinone oxidoreductase subunit 6 [Piper cenocladum] Length = 176 Score = 107 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + ++ S V+ + N IYS FSL F V + ++L + FVA L++Y Sbjct: 7 IHDILLVFLGSGIVLGSLGVILLTNTIYSAFSLGFVLVCISLFYILSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V +F +M + D I S F ++ L + Sbjct: 67 VGAINVLIIFAVMFMKGSEYSNDFSIWTVGDGVTSLVCTSIFFSLITTILDTSWYGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ +NV+ IG L T + P E+ +LL+++IGAI + + Sbjct: 127 TRSNQIMEQDL-LSNVQQIGIHLVTDFILPFELISIVLLVALIGAIAMARQ 176 >gi|11497584|ref|NP_054991.1| NADH dehydrogenase subunit 6 [Spinacia oleracea] gi|18203253|sp|Q9M3I8|NU6C_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|7636165|emb|CAB88787.1| NADH dehydrogenase ND6 subunit [Spinacia oleracea] Length = 176 Score = 107 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 8/171 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ + VV NPI+S FSL V + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGLILGALGVVLFTNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V +F +M + + + S F+ +++ L + Sbjct: 67 VGAINVLIIFSVMFMSGPEYDKKFQLWTVGDGVTSLVCISLFVSLISTILNTSWYGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++ N + IG L T + P E+ ILL+S+IGAI + + Sbjct: 127 TKSNQILEQDL-INASQQIGIHLSTDFFLPFELISIILLVSLIGAIAVARQ 176 >gi|329957593|ref|ZP_08298068.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides clarus YIT 12056] gi|328522470|gb|EGF49579.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides clarus YIT 12056] Length = 170 Score = 107 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 82/170 (48%), Gaps = 7/170 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + + S L VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 NLETIVFYFLAAFITVFSILTVTTKRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V ++F I++ + ++A K+ FL + A +++ + F A ++ Sbjct: 64 YAGGIVVLYVFSILLTSGEGDMAGKLKRSKFLAGLGTTVAGAVIVLFITLKHKFIATTDV 123 Query: 122 SRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + L N++ IG + + Y P E +LL ++G +++ + Sbjct: 124 APLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGLLIARKR 170 >gi|290489850|gb|ADD31332.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ilex cornuta] Length = 177 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 10/149 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 31 NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138 +G I+ L V + ++ + +N + IG L Sbjct: 91 HL--WTVGDGVTSIVCTSLFVSLMTTIPDTSWHGIIWTTKSNQIIEQDLISNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRH 167 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFFLPFELISIILLVALIGAIAVARQQ 177 >gi|332971170|gb|EGK10134.1| NADH-quinone oxidoreductase subunit J [Psychrobacter sp. 1501(2011)] Length = 241 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 8/143 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +AII+S V+ + NP++++ S+I + AG+F +LGA F + ++VY GA++ Sbjct: 15 FYALGLVAIIASLRVIMLANPVHAILSMIVTLLALAGIFFILGAPFAGALQVIVYAGAIL 74 Query: 68 VFFLFIIMMLDIDIEVAEPRKKR--------GFLGSFFIGILAAELIVCASNFMVFSAEG 119 V F+F+IMML++ + E K +F I ++ LI + Sbjct: 75 VLFVFVIMMLNLGTKNEERESKWLSSDTWAVPAALTFIIAVVLTYLISMGNGLSHADGSV 134 Query: 120 ELSRLVFKGNNVENIGKVLYTQY 142 + + + + + +G L+T+Y Sbjct: 135 VAATIGAETVSAKQVGIALFTEY 157 >gi|197294162|ref|YP_002149782.1| NADH-plastoquinone oxidoreductase subunit 6 [Cicer arietinum] gi|221272317|sp|B5LMS3|NU6C_CICAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|197089850|gb|ACH41120.1| NADH-plastoquinone oxidoreductase subunit 6 [Cicer arietinum] Length = 176 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 10/173 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + I+ S VV + NPI+S FSL V + ++L + FVA L++ Sbjct: 6 TLHDFLLVFLGSGLILGSLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ + +F +M ++ + +G I+ + V + ++ + Sbjct: 66 YVGAINILIIFAVMFMNSSEYYQDFNL--WTVGDGITLIVCTSIFVSLVTTIPDTSWYGI 123 Query: 122 SRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + IG L T + P E+ ILL+++IG IV+ + Sbjct: 124 IWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGTIVVARQ 176 >gi|269139722|ref|YP_003296423.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Edwardsiella tarda EIB202] gi|267985383|gb|ACY85212.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Edwardsiella tarda EIB202] gi|304559589|gb|ADM42253.1| NADH-ubiquinone oxidoreductase chain J [Edwardsiella tarda FL6-60] Length = 190 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + +A++++ V+T NP++++ LI + + A +F LGA F + ++VY G Sbjct: 2 EFAFYAAALVAVLATIRVITHTNPVHALLYLIVSLLAVAAVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E + G + L + +++ + + + +G + + Sbjct: 62 AIMVLFVFVVMMLNLGHSVVEQERAWLKPGVWIGPALLSLILLAVVLYAISTLQGGV--I 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + + +G L+ Y +E+ +LL ++ A + H Sbjct: 120 DGRAVDAKAVGIALFGPYVLAVELVSMLLLAGLVVAFHIGREHHPG 165 >gi|224538207|ref|ZP_03678746.1| hypothetical protein BACCELL_03098 [Bacteroides cellulosilyticus DSM 14838] gi|224520175|gb|EEF89280.1| hypothetical protein BACCELL_03098 [Bacteroides cellulosilyticus DSM 14838] Length = 170 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 7/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + + S L VT R+ + S L+F AG++ LLG F+ + ++ Sbjct: 3 ITLETVVFYFLAVFISVCSILTVTTRHMVRSATYLLFTLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ + + K+ L + A ++V + F + Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDRTTKLKRSKLLAGLGATVGGAIIVVFITLKHKFLVTTD 122 Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 L L N++ IG + + Y P E +LL ++G +V+ + Sbjct: 123 LVPLEI---NIKTIGHSMLSSDKFGYLLPFEAVSILLLACIVGGLVIARKR 170 >gi|160891175|ref|ZP_02072178.1| hypothetical protein BACUNI_03622 [Bacteroides uniformis ATCC 8492] gi|270294466|ref|ZP_06200668.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317481071|ref|ZP_07940150.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides sp. 4_1_36] gi|156859396|gb|EDO52827.1| hypothetical protein BACUNI_03622 [Bacteroides uniformis ATCC 8492] gi|270275933|gb|EFA21793.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902784|gb|EFV24659.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides sp. 4_1_36] Length = 170 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 7/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + + S L VT + S L+F AG++ LLG F+ + ++ Sbjct: 3 ITLETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ + +V E K+ FL + A ++V + F A + Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDVIEKLKRSRFLAGLGATVGGAIIVVFITLKHKFIATTD 122 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + L N++ IG + + Y P E +LL ++G +++ + Sbjct: 123 VEPLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGLLIARKR 170 >gi|110225687|ref|YP_665692.1| NADH dehydrogenase subunit 6 [Mesostigma viride] gi|17222558|gb|AAL36731.1|AF353999_11 NADH dehydrogenase subunit 6 [Mesostigma viride] Length = 219 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 52/216 (24%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FYLFS +A++S+ +V+ +NP+YSV LI F N L +L G +F+AM+ +VVYVGA Sbjct: 1 MLFYLFSSLALVSAIIVIRTKNPVYSVLFLILVFANVTALLILEGLDFLAMVFIVVYVGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA---------ELIVCASNFMVFS 116 + V FLF++MML+I++ R I IL+ ELI F +F Sbjct: 61 IAVLFLFVVMMLNINLAEMSENMVRYLPVGGLILILSLFQILLIVESELIPPLFPFKIFQ 120 Query: 117 AEGELSRLVF-------------------------------------------KGNNVEN 133 + LS +N++ Sbjct: 121 TDLLLSWFSNLQESLNAPLKENLTILYNIAPWHFVEPNLRPVSGINCFLMSQQDISNIQA 180 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 IG VL++ + + L + G ILL++MIG I+L + + Sbjct: 181 IGLVLFSTHWFYLMLGGLILLVAMIGTILLTMDKNK 216 >gi|290489880|gb|ADD31347.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Plumbago auriculata] Length = 176 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+ NPI+S FSL F + + ++L ++FVA L++YVGA+ V LF +M ++ Sbjct: 26 VIFFTNPIFSAFSLGFVLLCISLFYILENSQFVASAQLLIYVGAINVLILFAVMFIN--D 83 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVEN 133 + +G ++ L V ++ ++ + NN + Sbjct: 84 SEYDKDFHFWTIGDGITSLICTSLFVLLITSILNTSWYGIVWTTRLNHIVEQDLINNSQQ 143 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 IG L T + P E+ ILL+++IGAI + + Sbjct: 144 IGIHLSTDFFLPFELISIILLVALIGAITVARQ 176 >gi|206890416|ref|YP_002248753.1| NADH-ubiquinone oxidoreductase chain 6 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742354|gb|ACI21411.1| NADH-ubiquinone oxidoreductase chain 6 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 170 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ +F+ F I S V+ +N I+S F L+ ++ A +FL L AEF+ +I ++VY Sbjct: 5 IEQVFYVYFFISLTILSIAVIASKNIIHSAFFLLIFLLHVAAIFLFLNAEFLMIIQIIVY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VG V+ F+F IM+++I E R + + G L +F + Sbjct: 65 VGGVLALFIFAIMIMNIKEEFRHKRFVKFSIAGLITGFLFLA------GLYIFLGTVKSP 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 V ++V ++GK+LY+ Y P EI +LL++M+G I++ + Sbjct: 119 ENVLIKSDVNSLGKLLYSYYFLPFEILSLVLLIAMVGGIIIAKK 162 >gi|290790888|gb|ADD63144.1| NADH-plastoquinone oxidoreductase subunit 6 [Microlaena stipoides] Length = 176 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++LL + FVA+ L++YVGA+ + +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINILIIFAVMFVNGSEWSKD 89 Query: 86 PRKK---RGFLGSFFIGILAAELIVCA-SNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139 GF I I + + +++ +++V +G NNV+ IG L Sbjct: 90 KNFWTIGDGFTLLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLA 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+S+IGAI + + Sbjct: 150 TDFYLPFELISIILLVSLIGAITMARQ 176 >gi|225166014|ref|ZP_03727763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae bacterium TAV2] gi|224799739|gb|EEG18219.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae bacterium TAV2] Length = 177 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 2/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SLFFY+FS +A+ VV +N + S L+ V+ AG+F+LL A +A++ + VY Sbjct: 1 MSSLFFYVFSTLALACGLGVVFNKNTVTSALCLLGVLVSLAGIFVLLEAFLLAVLLIFVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+ FLFI+M+ D R + L + I A L+ + + ++ Sbjct: 61 AGAVVALFLFIVMLTDAAGGGGGKRFSKTTLVAGLIS--AVLLLAALYSIYAHGSFDTIA 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 G +++ G+ L+T Y P++I GF+LL++M+G IV+ + Sbjct: 119 PAASVGASLKTYGRELFTTYLLPVQIVGFLLLIAMLGVIVISKK 162 >gi|220919432|ref|YP_002494736.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter dehalogenans 2CP-1] gi|219957286|gb|ACL67670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter dehalogenans 2CP-1] Length = 168 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F++F+ + ++ V+ R+P+Y+ +L+ AF AG+++LL A +A + ++V Sbjct: 4 TAEQVTFWVFAIPLVATAIGVIMSRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV+V FLF+IM+L + E +R + L+ ++ + + EL Sbjct: 64 YAGAVMVLFLFVIMLLSLGDEHLIKEPRRAM--QLIGALGVVLLVAVLASAIAQARTSEL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 + L V+ +G+VLYTQ+ P E++ +LL Sbjct: 122 ATLTADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154 >gi|167630270|ref|YP_001680769.1| proton-translocating NADH-ubiquinone oxidoreductase, chain j [Heliobacterium modesticaldum Ice1] gi|167593010|gb|ABZ84758.1| proton-translocating NADH-ubiquinone oxidoreductase, chain j [Heliobacterium modesticaldum Ice1] Length = 170 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 3/163 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY + + ++S+ VV +++ ++S L +F+ AG+++LL A+F+A + ++VY GAV Sbjct: 10 AFYGLAALTLLSAAGVVFLKDIVHSALLLAASFIGVAGIYVLLNADFLAAVQVLVYGGAV 69 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + F +M+ R + F + A F F + Sbjct: 70 AILIAFGVMLTRRPHMKETNANNRWVVWGAFTAAFTFAICGWAIAFTPFMP---IDASPA 126 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + ++ I L + P E + +L +++IGAI+L + Sbjct: 127 QVTAIDGIATQLLGDFVVPFEAAAILLTVALIGAIILAKGAKE 169 >gi|315654706|ref|ZP_07907612.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii ATCC 51333] gi|315491170|gb|EFU80789.1| NADH-quinone oxidoreductase subunit J [Mobiluncus curtisii ATCC 51333] Length = 324 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q++F S +A+I++ V +++ ++ V AG++ +GAEF+ + +VV Sbjct: 16 TGQTIFVAACSALALIAALGVALSNRAVHAAVYMVAMMVCVAGIYFSVGAEFLGAVQIVV 75 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA+++ FLF+IM++ + + K G + + + ++A ++ + + G Sbjct: 76 YTGAIMMMFLFVIMLVGVQAVDSPRDSKVGTVAAAVLLVVAFGIMAIVAAVNT-TVNGAP 134 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +R N V +V+ T YA PLE+ +L+++ +GA+ L Sbjct: 135 ARPSGDPNPVRLASEVINTYYA-PLEMVATLLIVAAVGAMSLTHSE 179 >gi|167764934|ref|ZP_02437055.1| hypothetical protein BACSTE_03326 [Bacteroides stercoris ATCC 43183] gi|167697603|gb|EDS14182.1| hypothetical protein BACSTE_03326 [Bacteroides stercoris ATCC 43183] Length = 170 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 81/170 (47%), Gaps = 7/170 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + + S L VT R + S L+F AG++ LLG F+ + ++V Sbjct: 4 NLETIVFYFLAAFISVFSILTVTTRRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V ++F I++ + ++A K+ FL + A +++ + F A ++ Sbjct: 64 YAGGIVVLYVFSILLTSGEGDMAAKLKRSKFLAGLGATVAGAVIVLFITLKHKFIATTDI 123 Query: 122 SRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 L N++ IG + + Y P E +LL ++G +++ + Sbjct: 124 EPLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGLLIARKR 170 >gi|15806508|ref|NP_295219.1| NADH dehydrogenase I subunit J [Deinococcus radiodurans R1] gi|6459253|gb|AAF11059.1|AE001993_9 NADH dehydrogenase I, J subunit [Deinococcus radiodurans R1] Length = 205 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V +N +++ L+ + AGLF + A F+A ++VY GA++V FLF+IM+L Sbjct: 19 TVAAKNAVHAALGLVGTLICVAGLFASMNASFLAATQVIVYAGAIMVLFLFVIMLLGASQ 78 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV--FKGNNVENIGKVLY 139 + R F+G + + + L+ V +G +G+ L Sbjct: 79 PIT-ARDPLPFVGPLGAIAALLLAGGFVTLALTYQDPRPLAESVQALRGGAAGAVGETLL 137 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T++ P E +LL++++G++ L+ R Sbjct: 138 TRFLLPFEAVSILLLVAIVGSVTLVQR 164 >gi|189468081|ref|ZP_03016866.1| hypothetical protein BACINT_04475 [Bacteroides intestinalis DSM 17393] gi|189436345|gb|EDV05330.1| hypothetical protein BACINT_04475 [Bacteroides intestinalis DSM 17393] Length = 171 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 77/171 (45%), Gaps = 6/171 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + + S L VT R + S L+F AG++ LLG F+ + ++ Sbjct: 3 ITLETVVFYFLAVFITVCSILTVTTRRMVRSATYLLFTLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ + + + KR L + + +IV + Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDRTIDKLKRSKLMAGLGATVGGAIIVLF--ITLKHKFIV 120 Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 + L N++ IG + + Y P E +LL ++G +V+ + Sbjct: 121 TTDLAPLEINIKTIGHSMLSSDKYGYLLPFEAVSILLLACIVGGLVIARKR 171 >gi|86160614|ref|YP_467399.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Anaeromyxobacter dehalogenans 2CP-C] gi|85777125|gb|ABC83962.1| NADH dehydrogenase subunit J [Anaeromyxobacter dehalogenans 2CP-C] Length = 168 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F++F+ + ++ V+ R+P+Y+ +L+ AF AG+++LL A +A + ++V Sbjct: 4 TAEQVTFWVFAIPLVATAIGVIMSRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV+V FLF+IM+L + E +R + L+ ++ + + EL Sbjct: 64 YAGAVMVLFLFVIMLLSLGDEHLIKEPRRAM--QLIGALGVVLLVAVLASAIAQARTSEL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 + L V+ +G+VLYTQ+ P E++ +LL Sbjct: 122 ATLAADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154 >gi|27464589|gb|AAO16152.1| NADH dehydrogenase subunit 6 [Xenia sp. CSM-2002] gi|27464592|gb|AAO16154.1| NADH dehydrogenase subunit 6 [Asterospicularia randalli] Length = 154 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVIIASLVLLVAMIGAI 113 Query: 162 VLML----------RHRRDIKRQDISKQLESN 183 +L RQD+ Q+ + Sbjct: 114 LLAKQPNSPFLYNSHEESSRSRQDLFLQISRS 145 >gi|218129265|ref|ZP_03458069.1| hypothetical protein BACEGG_00842 [Bacteroides eggerthii DSM 20697] gi|317475237|ref|ZP_07934504.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides eggerthii 1_2_48FAA] gi|217988643|gb|EEC54963.1| hypothetical protein BACEGG_00842 [Bacteroides eggerthii DSM 20697] gi|316908690|gb|EFV30377.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides eggerthii 1_2_48FAA] Length = 170 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 7/170 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + + S L VT R + S L+F AG++ LLG F+ + ++V Sbjct: 4 NLETIVFYFLAAFITVFSILTVTTRRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V ++F I++ + ++A K+ FL I A ++V + F A ++ Sbjct: 64 YAGGIVVLYVFSILLTSGEGDIAGKLKRSKFLAGLGATIGGAIIVVFITLKHKFIATTDV 123 Query: 122 SRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 L N++ IG + + Y P E +LL ++G +++ + Sbjct: 124 VPLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGLLIARKR 170 >gi|139387497|ref|YP_001122850.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris] gi|221272341|sp|A4GGE9|NU6C_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|112031019|gb|ABH88131.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris] gi|158187182|gb|ABW22815.1| NADH-plastoquinone oxidoreductase subunit 6 [Phaseolus vulgaris] Length = 176 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 10/173 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + I+ S VV N I+S FSL V + ++L + FVA L++ Sbjct: 6 SLHDFILVFLGSGLILGSLGVVFFTNTIFSAFSLGLVLVCVSLFYILSNSHFVAASQLLI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ V +F +M ++ + + +G ++ + + N ++ ++ + Sbjct: 66 YVGAINVLIIFAVMFMN--GSEYDQNFRVWTVGDGITLMVCTSIFISQINTILDTSWHGI 123 Query: 122 SRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + IG L T + P E+ ILL+++IGAI + + Sbjct: 124 IWTTRPNQILEQDLISTSQQIGIHLSTDFFLPFELISIILLVALIGAIFVARQ 176 >gi|150017831|ref|YP_001310085.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Clostridium beijerinckii NCIMB 8052] gi|149904296|gb|ABR35129.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Clostridium beijerinckii NCIMB 8052] Length = 163 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 5/163 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F+ +F+ I + VV +N I+S S+I F+ A +F+LL A+F+A+ +++Y Sbjct: 2 ISAFVFWPIAFLIIAFAIGVVYSKNIIHSALSMILTFIGIAVVFILLQADFLALAQILIY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+ + +F IM+ + + + LI F+ + Sbjct: 62 AGAISILIVFAIMLTRKNDMKNSNPFNKLRWTGLAFCLGFFGLITRLILRSNFTYKN--- 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + N + I + Y P E+S +LL++++GAI+L Sbjct: 119 --LNIENTISAIADGFFGNYMIPFEVSALLLLIALVGAIILAK 159 >gi|301353376|ref|YP_003795634.1| NADH-plastoquinone oxidoreductase subunit 6 [Pteridium aquilinum subsp. aquilinum] gi|301016294|gb|ADK47581.1| NADH-plastoquinone oxidoreductase subunit 6 [Pteridium aquilinum subsp. aquilinum] Length = 195 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 5/150 (3%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + S V+ N +S FSL F + + +L A+ VA +VYVGA+ V + +M+ Sbjct: 21 LGSLGAVSFANLTHSAFSLGLVFTRISLSYFVLNADSVAAAQSLVYVGAINVSIVSAVMV 80 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSAEGELSRLVFKGNNV 131 D + G+ + + ++ + + F + E+ G+NV Sbjct: 81 TDQPTRSNSTSRNIGYFIALGACAILFSVLTNMIHNTKWFDVSFITQSEILAANTSGSNV 140 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + +G L T++ P E++ +LL++++GAI Sbjct: 141 QQLGYKLLTEFLVPFELASILLLVALVGAI 170 >gi|197124711|ref|YP_002136662.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. K] gi|196174560|gb|ACG75533.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. K] Length = 168 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F++F+ + ++ V+ R+P+Y+ +L+ AF AG+++LL A +A + ++V Sbjct: 4 TAEQVTFWVFAIPLVATAIGVIISRSPVYAAMNLVAAFFFLAGIYVLLVAHLIAFMQILV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV+V FLF+IM+L + E +R + L+ ++ + + EL Sbjct: 64 YAGAVMVLFLFVIMLLSLGDEHLIKEPRRAM--QLIGALGVVLLVAVLASAIAQARTSEL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 + L V+ +G+VLYTQ+ P E++ +LL Sbjct: 122 ATLTADFGTVKAVGRVLYTQFLLPFEVTSLLLL 154 >gi|52220864|ref|YP_087019.1| NADH dehydrogenase subunit 6 [Panax ginseng] gi|75254100|sp|Q68RV3|NU6C_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|51235367|gb|AAT98563.1| NADH dehydrogenasesubunit 6 [Panax ginseng] Length = 176 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-------I 79 NPIYS FSL V + ++L + FVA L++YVGA+ V LF +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF 90 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 + S F+ ++ + + ++ +N + IG L Sbjct: 91 HLWTIGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTKSNQIIEQDL-ISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176 >gi|325280128|ref|YP_004252670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Odoribacter splanchnicus DSM 20712] gi|324311937|gb|ADY32490.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Odoribacter splanchnicus DSM 20712] Length = 169 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 8/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + + F + + ++ S L VT + + S L+F AG++ L F+ + L Sbjct: 3 ITLPQAVFLFLAAVIVVCSILTVTTKRILRSATYLLFVLFATAGIYFELNYSFLGAVQLT 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G +IV ++F I++ D + A+ K F F GILAA F+ + Sbjct: 63 VYAGGIIVLYVFSILLTSSDNKKADKIKNSKF----FAGILAAVGGAALCIFITLTHSFP 118 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 +S V N + IG L QY P E+ +LL +IG I++ + Sbjct: 119 VSHFVPGEINQKVIGTALMGTEKYQYLLPFEVISVLLLACIIGGILIARKR 169 >gi|75755712|ref|YP_319816.1| NADH dehydrogenase subunit 6 [Acorus calamus] gi|161622362|ref|YP_001586234.1| NADH dehydrogenase subunit 6 [Acorus americanus] gi|122217394|sp|Q3V4Y1|NU6C_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272304|sp|A9LYF3|NU6C_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|74381762|emb|CAI53847.1| NADH dehydrogenase ND6 subunit [Acorus calamus] gi|156573645|gb|ABU85156.1| NADH-plastoquinone oxidoreductase subunit 6 [Acorus americanus] gi|160369905|gb|ABX38796.1| NADH-plastoquinone oxidoreductase subunit 6 [Acorus americanus] Length = 177 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 8/148 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGAV V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSND 89 Query: 86 PRKK-------RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 S ++ L + + ++ +NV+ IG L Sbjct: 90 FYLWTVGDGVTSLVCTSILFSLITTILDTSWYGIIWNTGSNQIVEQDLT-SNVQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFYLPFELVSIILLVALIGAITMARQ 176 >gi|81176304|ref|YP_398381.1| NADH dehydrogenase subunit 6 [Lactuca sativa] gi|122212008|sp|Q332S4|NU6C_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|78675222|dbj|BAE47648.1| NAD(P)H-quinone oxidoreductase chain 6 [Lactuca sativa] gi|88657035|gb|ABD47285.1| NADH-plastoquinone oxidoreductase subunit 6 [Lactuca sativa] Length = 176 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 10/148 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 31 NPIYSAFSLGLVFVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFINGSEYSKDF 90 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138 +G ++ L V + ++ + +N + IG L Sbjct: 91 HL--WTVGDGITSVVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E ILL+++IGAI + + Sbjct: 149 STDFFLPFEFISIILLVALIGAIAVARQ 176 >gi|145219894|ref|YP_001130603.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Prosthecochloris vibrioformis DSM 265] gi|145206058|gb|ABP37101.1| NADH dehydrogenase subunit J [Chlorobium phaeovibrioides DSM 265] Length = 173 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 7/149 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FYLF+ + + S+ VV RN IYS FSL+F F A L++ L A+F+A+ +VVYVG Sbjct: 7 TVIFYLFAAITVFSAAFVVFSRNVIYSAFSLLFTFFGIAALYVFLSADFIAVTQVVVYVG 66 Query: 65 AVIVFFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 ++V LF +M + +D ++ F+GILAA L + ++ +L Sbjct: 67 GILVLLLFGVMFTNNIMDTDLKTDVLHAIPGTFLFLGILAALLFTFYTTNGWMPSDTQL- 125 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGF 151 +G+ VE IG ++Y P E++ Sbjct: 126 ----QGSVVERIGFETMSRYVLPFEMASI 150 >gi|297625181|ref|YP_003706615.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Truepera radiovictrix DSM 17093] gi|297166361|gb|ADI16072.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Truepera radiovictrix DSM 17093] Length = 184 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 94/179 (52%), Gaps = 1/179 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F+L + + ++ + V+T+R P+++ +L+ + A ++ L A F+A I ++VY GA Sbjct: 2 LTFFLLAAVMVLGALGVITLRQPVHAALALVGTLLTLAVTYVTLQAHFLAAIQVIVYAGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRL 124 ++V FLF+IM+L+++ + R ++ G++AA + + + ++ Sbjct: 62 IMVLFLFVIMLLNVEGDEGTVRLAWVRPAAYLTGVVAAAGVALTAFLDARQLPDAQVITA 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 G +G VL+ Q+ ++ G +LL ++GA+ L+ R R+ +++ + E Sbjct: 122 ALAGGGAGALGGVLFNQFVLAFQLVGVLLLTGIVGAVSLVERSAREKGDEEVFGEPERE 180 >gi|321401341|gb|ADW83096.1| NADH dehydrogenase subunit 6 [Pavlova lutheri] Length = 212 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 114/207 (55%), Gaps = 21/207 (10%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 SL +LFS A++SS +V+T NP++SVF+LIF FVN A + L+L EF++++ LVVYVG Sbjct: 6 SLIIFLFSSFALVSSAVVITATNPVHSVFALIFVFVNVASVLLVLRVEFISLLFLVVYVG 65 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG---------ILAAELIVCASNFMVF 115 AV V FLF+IMML++ + A +G I+ +L+ + F+ Sbjct: 66 AVAVLFLFVIMMLNVKLNEASDNSVSYLPLGLVLGVLFLLEVSLIITGDLLPFSGGFLYR 125 Query: 116 SAEGE------------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 S + L +V NN++ IG V+YT +P ++G +LLLSMIGAIVL Sbjct: 126 SEISQNLFAGSPFSHLHLESVVAVPNNMQLIGSVVYTDLFFPFILAGLLLLLSMIGAIVL 185 Query: 164 MLRHRRDIKRQDISKQLESNPDNSIVM 190 L +QDI KQ+ SI + Sbjct: 186 SLMKTSSALKQDIFKQVSVLAFESIRV 212 >gi|89280689|ref|YP_514906.1| NADH dehydrogenase subunit 6 [Solanum lycopersicum] gi|122201762|sp|Q2MI47|NU6C_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|84372037|gb|ABC56354.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum lycopersicum] gi|89241725|emb|CAJ32448.1| NADH degydrogenase subunit 6 [Solanum lycopersicum] Length = 176 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L A FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135 K L + GI + I + + ++ +++ +N + IG Sbjct: 86 YYKDFHLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 146 IHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|329962488|ref|ZP_08300488.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides fluxus YIT 12057] gi|328530044|gb|EGF56932.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides fluxus YIT 12057] Length = 170 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 7/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + + S L VT + S L+F AG++ LLG F+ + ++ Sbjct: 3 INLETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ + ++A K+ FL I A +++ + F A + Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDIAGKLKRSKFLAGLGTTIGGAVIVLFITLNHKFIATTD 122 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + L N++ IG + + Y P E +LL ++G +++ + Sbjct: 123 VEPLEV---NIKTIGHHMLSGDKYGYLLPFEAVSILLLACIVGGLLIARKR 170 >gi|182412572|ref|YP_001817638.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus terrae PB90-1] gi|177839786|gb|ACB74038.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus terrae PB90-1] Length = 211 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 1/167 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + + + V+ + I +V L+ V AGL+ L + F+A++ +++YVG Sbjct: 12 AAVFALAIGTTLAGALIAVSSQRIIRAVTGLMICCVGLAGLYYFLNSPFLALMEILIYVG 71 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV V +F +M+ + D V + R F + +++A + + + + Sbjct: 72 AVCVTIVFGVMLAEPDWPV-NLKHPRAFHKTLLAALVSAAIGGGLAGLALHAPWPAQPVQ 130 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 +V IG L T Y++ E+ +LL++++GA+V+ R Sbjct: 131 TVNDGSVAAIGTSLLTTYSFVFELISLVLLVAILGALVIARAGRSRT 177 >gi|255007681|ref|ZP_05279807.1| putative NADH dehydrogenase chain J [Bacteroides fragilis 3_1_12] gi|313145376|ref|ZP_07807569.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12] gi|313134143|gb|EFR51503.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12] Length = 170 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 7/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + I S L VT + + S L+F AG++ LLG F+ + ++ Sbjct: 3 LTLETVVFYFLAVFIIAMSILTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ + + A K+ FL I+ A L++ + F + Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDRAAHLKRSKFLAGLATTIVGAALVLFITLTHKFVPTSD 122 Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 + ++ IG L + Y P E +LL ++G +++ + Sbjct: 123 PEPVEIS---IKTIGHALLSSGKYGYVLPFEAVSILLLACIVGGLLIARKR 170 >gi|323148957|ref|YP_004222511.1| NADH-plastoquinone oxidoreductase subunit 6 [Smilax china] gi|308742648|gb|ADO33499.1| NADH-plastoquinone oxidoreductase subunit 6 [Smilax china] Length = 176 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYSND 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 R +G ++ ++ + ++ + +NV+ IG Sbjct: 90 SRL--WTIGDGVTSLVCTSILFSLITTIPDTSWYGILWTTKSNQILEQDLISNVQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+S+IGAI + + Sbjct: 148 LSTDFYLPFELISIILLVSLIGAITMARQ 176 >gi|91984046|ref|YP_567131.1| NADH dehydrogenase subunit 6 [Vitis vinifera] gi|122236488|sp|Q0ZIW5|NU6C_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|91701704|gb|ABE47588.1| NADH-plastoquinone oxidoreductase subunit 6 [Vitis vinifera] Length = 176 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78 NPIYS FSL FV + ++ + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVFVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 ++ S F ++ L + + ++ +N + IG L Sbjct: 90 FNLWTVGDGVTSVVCTSIFASLITTILDTSWYGIIWTTRSNQIIEQDL-ISNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFFLPFELISIILLVALIGAIAVARQ 176 >gi|208435163|ref|YP_002266829.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori G27] gi|208433092|gb|ACI27963.1| NADH-ubiquinone oxidoreductase chain J [Helicobacter pylori G27] Length = 166 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 2/146 (1%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYVGAVIV + F +M + Sbjct: 2 ALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFGMMFFN 61 Query: 79 IDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 EV E ++ L SF + +L ++ S S + + + + N++ IG Sbjct: 62 SAAEVIERKQSPKILCALSFGVALLLTLILSAPSIGENLSNQVNSNAIDAQIPNIKAIGY 121 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIV 162 VL+T Y P E + +LL++M+G I Sbjct: 122 VLFTNYLIPFEAAALMLLVAMVGGIA 147 >gi|308746028|ref|YP_003934612.1| NADH-plastoquinone oxidoreductase subunit 6 [Cheilanthes lindheimeri] gi|302375461|gb|ADL29835.1| NADH-plastoquinone oxidoreductase subunit 6 [Cheilanthes lindheimeri] Length = 197 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 5/164 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + L ++ S V+ N S FS F + L+ + A+FVA +VY Sbjct: 7 IHEFVLALVELGILLGSLGAVSFVNTANSAFSPGSVFTCISLLYFVSNADFVAAAQSLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL-GSFFIGILAAELIVCASNF----MVFSA 117 VGAV V +F +M+ D G+L S IL + L N + F+ Sbjct: 67 VGAVNVLTVFAVMITDEPTGSNVAASGVGYLSASGACAILFSALAYVIHNTKWFDLSFTN 126 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + + GNNV+ +G L ++ P E++ +LL++++GAI Sbjct: 127 QSGIIMSGIPGNNVQQLGYKLLGEFVVPFELASILLLVALVGAI 170 >gi|78778013|ref|YP_394328.1| NADH dehydrogenase subunit J [Sulfurimonas denitrificans DSM 1251] gi|78498553|gb|ABB45093.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sulfurimonas denitrificans DSM 1251] Length = 190 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 7/183 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ FYLF+F+ I ++ VT +Y++ +L + + F +LGA+F+ + +VVY Sbjct: 2 FEAIAFYLFAFLTIAMFYIAVTTSQALYALSALAAGMIFISAFFFILGADFLGAVQIVVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+ + F +M D EV E + + + + A +++ + +V S L Sbjct: 62 SGAVMALYAFGMMFFDTTREVKEKQGNKAIVIGLS-SLAALMVVIIVAAPIVGSNIEALY 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 + NV+ +G VL+T+Y P E++ +LL++MI IVL K+ D+S L S Sbjct: 121 PMSEGVGNVQEVGMVLFTKYLVPFEVAAVMLLVAMIAGIVLA------GKKMDLSLTLMS 174 Query: 183 NPD 185 + + Sbjct: 175 DSE 177 >gi|310789318|gb|EFQ24851.1| NADH dehydrogenase subunit 6 [Glomerella graminicola M1.001] Length = 247 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 52/213 (24%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S +AI+ + L + +NPI SV LI F + +LLG F+ + L+VYVGAV + Sbjct: 22 IVSILAILCAILTIVSKNPIVSVLFLIGLFGMVSSYLILLGLNFIGLSYLIVYVGAVSIL 81 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112 FLFI+M+++I + + K + FI IL LI + Sbjct: 82 FLFILMLINIRVSELQSNTKNSIPLALFITILFNYLIFQFLPYDLAILNNSNHSSALNNV 141 Query: 113 -----------------------------------MVFSAEGELSRLVFKGNNVENIGKV 137 + F+ + + +++ +IG + Sbjct: 142 LYHTSFNGISDYNKIFNSFGSNSQISNVAKEGSSDLFFATSSSWDGNLIETSHISSIGNI 201 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 LYT ++ L ++ FILLL+MIGAIV+ ++ + Sbjct: 202 LYTSHSMWLILTSFILLLAMIGAIVITIKQKNK 234 >gi|163781780|ref|ZP_02176780.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] gi|159883000|gb|EDP76504.1| NADH dehydrogenase I chain J [Hydrogenivirga sp. 128-5-R1-1] Length = 159 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 4/162 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + F + S V V++P++S+ + A + AG+FL LGAE +A + L++Y A Sbjct: 1 MILGVLGFWLLASVLGAVLVKSPVHSILFFLSAVLAMAGIFLSLGAELLAGLQLIIYAVA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++VF++ +I + + R F +G+ ++ +MV + Sbjct: 61 IVVFYVLVITTIPWEKVKRFEGVYRR---EFLMGLPVVLVVFALMGYMVLKGKLAQPSEA 117 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +NV +GK L+T Y +P E++ ILL++MIGAI+L + Sbjct: 118 VQ-DNVRELGKTLFTSYLFPFEVASVILLVAMIGAILLGRKE 158 >gi|53712157|ref|YP_098149.1| NADH dehydrogenase I chain J [Bacteroides fragilis YCH46] gi|60680341|ref|YP_210485.1| putative NADH dehydrogenase chain J [Bacteroides fragilis NCTC 9343] gi|253563805|ref|ZP_04841262.1| NADH dehydrogenase subunit I J [Bacteroides sp. 3_2_5] gi|265765488|ref|ZP_06093763.1| NADH dehydrogenase subunit I J [Bacteroides sp. 2_1_16] gi|52215022|dbj|BAD47615.1| NADH dehydrogenase I chain J [Bacteroides fragilis YCH46] gi|60491775|emb|CAH06533.1| putative NADH dehydrogenase chain J [Bacteroides fragilis NCTC 9343] gi|251947581|gb|EES87863.1| NADH dehydrogenase subunit I J [Bacteroides sp. 3_2_5] gi|263254872|gb|EEZ26306.1| NADH dehydrogenase subunit I J [Bacteroides sp. 2_1_16] gi|301161874|emb|CBW21418.1| putative NADH dehydrogenase chain J [Bacteroides fragilis 638R] Length = 170 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 7/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + I S L VT + + S L+F AG++ LLG F+ + ++ Sbjct: 3 LTLETVVFYFLAVFIIAMSILTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ + + A K+ FL I+ A L++ + F + Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDRAAHLKRSKFLAGLVTTIIGAILVLFITLTHKFVPTSD 122 Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 + ++ IG L + Y P E +LL ++G +++ + Sbjct: 123 PEPVEIS---IKTIGHALLSSGKYGYVLPFEAVSILLLACIVGGLLIARKR 170 >gi|170727212|ref|YP_001761238.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Shewanella woodyi ATCC 51908] gi|169812559|gb|ACA87143.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Shewanella woodyi ATCC 51908] Length = 205 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 18/203 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + + +IS+ L VT N ++++ L+ + A +F L G+ F A + ++VY Sbjct: 1 MIEIIFITTAIVCVISALLTVTAHNAVHALLYLVTMMIAIALIFFLFGSPFAAALQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA----- 117 GAV+V F+F+ MML + K L + +L A ++V + + Sbjct: 61 AGAVMVLFVFVTMMLHQGEQSIIDEKTLFSLKTAKGPLLLAVILVIELLLIGITPLDNSP 120 Query: 118 -------------EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 + S +V+++ K LY Y + I+ +LL S+I AI + Sbjct: 121 SLTPLNTVNSESQQLSTSSKTPSLTSVKSLAKQLYGPYKLLVIIAAMLLLSSLIAAIHIA 180 Query: 165 LRHRRDIKRQDISKQLESNPDNS 187 + R + ++ ES + Sbjct: 181 RKSSRLTENSPVNGDSESKASEA 203 >gi|33519936|ref|NP_878768.1| NADH dehydrogenase I chain J [Candidatus Blochmannia floridanus] gi|33504282|emb|CAD83174.1| NADH dehydrogenase I chain J [Candidatus Blochmannia floridanus] Length = 183 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+ +AII++ LV+ NPIY++ LIF+ + + L A F I +++Y GA Sbjct: 3 VLFYVSGIIAIIATILVIISNNPIYALLYLIFSLLCTSCNLFSLNASFAGSIEIIIYAGA 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F+F IMM D+ + K S I + A+ LI ++FS + + Sbjct: 63 IMVLFMFSIMMFDMKNIILNVCNKEYTFLSLRICVGASLLISALLIIVLFSILQITNCFI 122 Query: 126 FKGN---NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 N +++ IG L+ Y +E++ F+LL ++I I + + Sbjct: 123 DGINCVIDIKQIGITLFGPYMLIVEVASFLLLSALIAVIHIAQEDK 168 >gi|11466850|ref|NP_039447.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|50234041|ref|YP_052818.1| NADH dehydrogenase subunit 6 [Oryza nivara] gi|109156636|ref|YP_654255.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group] gi|68565730|sp|Q6ENA4|NU6C_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|148880121|sp|P0C329|NU6C_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|148880122|sp|P0C330|NU6C_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|148880123|sp|P0C331|NU6C_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|12053|emb|CAA33908.1| NADH dehydrogenase ND6 [Oryza sativa Japonica Group] gi|42795528|gb|AAS46095.1| NADH dehydrogenase subunit 6 [Oryza sativa Indica Group] gi|42795594|gb|AAS46160.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|42795658|gb|AAS46223.1| NADH dehydrogenase subunit 6 [Oryza sativa Japonica Group] gi|46805098|dbj|BAD17337.1| rice chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica Group] gi|46805101|dbj|BAD17340.1| rice chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica Group] gi|49615065|dbj|BAD26848.1| NADH dehydrogenase subunit 6 [Oryza nivara] gi|290790615|gb|ADD62875.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza sativa Japonica Group] gi|290790684|gb|ADD62943.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza meridionalis] gi|290790753|gb|ADD63011.1| NADH-plastoquinone oxidoreductase subunit 6 [Oryza australiensis] gi|226674|prf||1603356DB NADH dehydrogenase ND6 Length = 176 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NP +S FSL V + ++LL + FVA+ L++YVGA+ V +F +M ++ + Sbjct: 30 TNPTFSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89 Query: 86 PRKK---RGFLGSFFIGILAAELIVCA-SNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139 GF I I + + +++ +++V +G NNV+ IG L Sbjct: 90 KNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLA 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+S+IGAI + + Sbjct: 150 TDFYLPFELISIILLVSLIGAITMARQ 176 >gi|323149135|ref|YP_004222699.1| NADH-plastoquinone oxidoreductase subunit 6 [Anthriscus cerefolium] gi|289645628|gb|ADD13691.1| NADH-plastoquinone oxidoreductase subunit 6 [Anthriscus cerefolium] Length = 176 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------DI 79 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M + + Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKNF 90 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 + S F+ ++ + + ++ +N + IG L Sbjct: 91 HLWTVGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDL-ISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176 >gi|290489884|gb|ADD31349.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Staphylea colchica] Length = 178 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 8/173 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + I+ VV NPIYS FSL V + ++ + FVA L++ Sbjct: 6 TIHDFLLVFLGSGLILGGLGVVLRTNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ + +F +M ++ + +G ++ + V ++ ++ + Sbjct: 66 YVGAINILIIFAVMFMNGSEYYKDFNLWTVGIGDGVTSLVCTSIFVSLITIILDTSWYGI 125 Query: 122 SRLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 NN + IG L T + P E+ ILL+S+IGAI + + Sbjct: 126 IWTTRSNQIIEQDLINNSQQIGIHLSTDFFLPFELISIILLVSLIGAIAMARQ 178 >gi|323168551|gb|EFZ54231.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Shigella sonnei 53G] gi|332766099|gb|EGJ96309.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Shigella flexneri 2930-71] Length = 166 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 ++T NP++++ LI + + +G+F LGA F + ++VY GA++V F+F++MML++ Sbjct: 1 MITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGG 60 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141 E ++ + + + +++ + + + + + + +G L+ Sbjct: 61 SEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQ--GIDGTPISAKAVGITLFGP 118 Query: 142 YAYPLEISGFILLLSMIGAIVLMLRHR 168 Y +E++ +LL ++ A + R Sbjct: 119 YVLAVELASMLLLAGLVVAFHVGREER 145 >gi|207108911|ref|ZP_03243073.1| NADH dehydrogenase subunit J [Helicobacter pylori HPKX_438_CA4C1] Length = 166 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 2/146 (1%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + +V+T N +Y++ +L + V + F LL AEF+ ++ + VYVGAVIV + F +M + Sbjct: 2 ALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFGMMFFN 61 Query: 79 IDIEVAEPRKKRGFLG--SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 EV E ++ L SF + +L ++ S S + + + + N++ IG Sbjct: 62 SAAEVIERKQSPKILCALSFGVALLLTLILSAPSIGENLSRQVNSNAIDAQIPNIKAIGY 121 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIV 162 VL+T Y P E + +LL++M+G I Sbjct: 122 VLFTNYLIPFEAAALMLLVAMVGGIA 147 >gi|86158999|ref|YP_465784.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Anaeromyxobacter dehalogenans 2CP-C] gi|85775510|gb|ABC82347.1| NADH dehydrogenase subunit J [Anaeromyxobacter dehalogenans 2CP-C] Length = 211 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 81/165 (49%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FY + + + + V RN +YS F L+ A + A L++LL A+FVA+ L++Y Sbjct: 47 LPDVLFYALAVLTVAGAAGVALSRNILYSTFGLLVALLGAGSLYVLLSADFVAVTQLLIY 106 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G V+V LF +M+ + ++ G G F + + A +++ + + Sbjct: 107 IGGVLVLILFAVMLTNRITDINVSNTSFGLFGGFLLFVAGAPVLLAVALL----TPWQAG 162 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + IG +++ P E++ +LL +++GAIV+ + Sbjct: 163 AAAPLAPTTQAIGDAFLSRWLLPFEVASLVLLSTLVGAIVIARKE 207 >gi|156584755|gb|ABU85209.1| NADH-plastoquinone oxidoreductase subunit 6 [Anethum graveolens] Length = 176 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 10/148 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 31 NPIYSAFSLGLVLACTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138 +G I+ + V + ++ + +N + IG L Sbjct: 91 HL--WTVGDGVTSIVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDFISNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFFLPFELISIILLVALIGAIAVARQ 176 >gi|290489862|gb|ADD31338.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Berberidopsis corallina] Length = 176 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL + + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLICISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 +G ++ + V + ++ + +N + IG Sbjct: 90 FHL--WTIGDGVTSLVCTSIFVSLITTIPDTSWYGIIWTTRSNQIIEQDLISNSQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 148 LSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|312890387|ref|ZP_07749924.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603] gi|311297157|gb|EFQ74289.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603] Length = 165 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 98/165 (59%), Gaps = 2/165 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY +F++I+ + LV+ +NP++SV LI F ++LL A+F+A++ +VY+GA+ Sbjct: 3 LFYFVAFLSILFALLVIFSKNPVHSVLYLILTFFTFTIHYILLNAQFLAIVNFIVYMGAI 62 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V FLF++M+L++ E +EP K + IG LI A++F V ++ Sbjct: 63 MVLFLFVLMLLNL-NEDSEPVKTSMVKFAAIIGG-GCLLITLAASFKVVHPSSVVALTND 120 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 V+N+GKVL+ ++ P E+S +L +M+GA++L + + ++ Sbjct: 121 NLGLVKNLGKVLFNEFLLPFEVSSLLLFSAMVGAVLLATKDKSNV 165 >gi|290489858|gb|ADD31336.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Nerium oleander] Length = 176 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M I+ VV + NPIYS FSL V + ++LL + FVA L++Y Sbjct: 7 MHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCISLFYILLSSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF +M + + R +G ++ L + + ++ + Sbjct: 67 VGAVNVLILFAVMFMSGSEYYKDSRL--WTVGDGVTSMVCTSLFISLITTIPDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 125 WTTRSNQVLEQDLISNSQQIGIHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|108773182|ref|YP_635692.1| NADH dehydrogenase subunit 6 [Solanum tuberosum] gi|122196327|sp|Q27RZ6|NU6C_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|88656857|gb|ABD47110.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum tuberosum] Length = 176 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL + + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLICTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135 K L + GI + I + + ++ +++ +N + IG Sbjct: 86 YYKDFHLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 146 IHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|309322278|ref|YP_003934356.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa] gi|197131416|gb|ACH47226.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa] gi|300069371|gb|ADJ66491.1| NADH-plastoquinone oxidoreductase subunit 6 [Monsonia speciosa] Length = 178 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 8/149 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL F+ + F+L FVA L++YVGA+ V LF +M ++ Sbjct: 30 TNPIFSAFSLGLVFICISFFFILANCHFVAAAQLLIYVGAINVLILFAVMFMNSSEYAKS 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 LG+ ++ L + + ++ ++ + +N + IG Sbjct: 90 KDLHLRTLGAGATSLVCTTLFLSIISNILDTSWYGIIWTTRANQILEKDLISNSQQIGIR 149 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + Sbjct: 150 LSTDFYLPFELISIILLVALIGAIAAARQ 178 >gi|183217792|ref|YP_001837412.1| NADH dehydrogenase subunit 6 [Guizotia abyssinica] gi|221272325|sp|B2LMP5|NU6C_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|179366307|gb|ACB86578.1| NADH-plastoquinone oxidoreductase subunit 6 [Guizotia abyssinica] Length = 176 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 10/148 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 31 NPIYSAFSLGLVFVCISLFYILANSHFVAAAQLLIYVGAINVLIIFAVMFINGSEYSKDF 90 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138 +G ++ L V + ++ + +N + IG L Sbjct: 91 HL--WTVGDGVTSVVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E ILL+++IGAI + + Sbjct: 149 STDFFLPFEFISIILLVALIGAIAVARQ 176 >gi|11466018|ref|NP_054560.1| NADH dehydrogenase subunit 6 [Nicotiana tabacum] gi|78102601|ref|YP_358740.1| NADH dehydrogenase subunit 6 [Nicotiana sylvestris] gi|81301631|ref|YP_398926.1| NADH dehydrogenase subunit 6 [Nicotiana tomentosiformis] gi|14194987|sp|Q32722|NU6C_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|122212870|sp|Q33BW9|NU6C_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|122213586|sp|Q3C1Q1|NU6C_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|2924281|emb|CAA77434.1| NADH dehydrogenase ND6 subunit [Nicotiana tabacum] gi|77799628|dbj|BAE46717.1| NADH dehydrogenase ND6 subunit [Nicotiana sylvestris] gi|80750990|dbj|BAE48066.1| NADH dehydrogenase ND6 subunit [Nicotiana tomentosiformis] Length = 176 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135 K L + GI + I + + ++ +++ +N + IG Sbjct: 86 YYKDFHLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFISNSQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 146 IHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|160886843|ref|ZP_02067846.1| hypothetical protein BACOVA_04857 [Bacteroides ovatus ATCC 8483] gi|299148401|ref|ZP_07041463.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 3_1_23] gi|156107254|gb|EDO08999.1| hypothetical protein BACOVA_04857 [Bacteroides ovatus ATCC 8483] gi|298513162|gb|EFI37049.1| NADH dehydrogenase I, subunit 6 [Bacteroides sp. 3_1_23] Length = 170 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 7/159 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V ++F I++ + + AE K+ L I +I+ + F + Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKAKRSKLLAGLITMIAGLAIILTITLKHNFM---QT 120 Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLS 156 + L N+ IG L + Y P E +LL Sbjct: 121 ANLAPHEINIHAIGNALLSSDKYGYILPFEAVSILLLAC 159 >gi|148653488|ref|YP_001280581.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Psychrobacter sp. PRwf-1] gi|148572572|gb|ABQ94631.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Psychrobacter sp. PRwf-1] Length = 234 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 77/148 (52%), Gaps = 8/148 (5%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FY +AII+S V+ + NP++++ S+I + + AG+F ++GA F + ++VY GA++ Sbjct: 15 FYALGLVAIIASLRVIMLANPVHAILSMIVSLLALAGIFFIIGAPFAGALQVIVYAGAIL 74 Query: 68 VFFLFIIMMLDIDIEVAEPRKK------RGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 V F+F+IMML++ ++ + I + + V +A+G + Sbjct: 75 VLFVFVIMMLNLGVKNDARESLWLSSDVWAVPAALSFVIAVVLGYILSLGNGVHNADGTV 134 Query: 122 SRLVFKGNNV--ENIGKVLYTQYAYPLE 147 ++ + + + +G L+T+Y +E Sbjct: 135 AQAMIGAQTISAKQVGIALFTEYLLLVE 162 >gi|313199752|ref|YP_004021366.1| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao] gi|309321316|gb|ADO64859.1| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao] gi|328924831|gb|ADO64942.2| NADH-plastoquinone oxidoreductase subunit 6 [Theobroma cacao] Length = 176 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGA+ V LF +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 +G+ ++ ++V ++ ++ + +N + IG Sbjct: 90 FNL--WTIGNGVTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E ILL+++IGAI + + Sbjct: 148 LATDFFLPFEFISIILLVALIGAIAVARQ 176 >gi|114804316|ref|YP_762313.1| NADH-plastoquinone oxidoreductase subunit 6 [Morus indica] gi|122166758|sp|Q09WW5|NU6C_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|78100368|gb|ABB21009.1| NADH-plastoquinone oxidoreductase subunit 6 [Morus indica] Length = 176 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + L++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLLYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 86 PRKK------RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 + + G+L + + ++++ +N + IG L Sbjct: 90 FNLWTVGNGFTLLICTSIFGLLITTITDTSWYGIIWTTRSNQIIEHDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E ILL ++IGAI + + Sbjct: 150 TDFFLPFEFISIILLAALIGAITVARQ 176 >gi|332830197|gb|EGK02825.1| hypothetical protein HMPREF9455_01075 [Dysgonomonas gadei ATCC BAA-286] Length = 167 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 89/168 (52%), Gaps = 3/168 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S+ FY+ + + I + L V +NPI+S +I F + +G FLLL A F+A++ +VVY Sbjct: 1 MISVIFYILAAITIGTGILTVISKNPIHSAVYMIICFFSISGHFLLLNALFLAVVNIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GA++V LF +M++++ + +K + ++ L+ + Sbjct: 61 AGAIMVLLLFTLMLMNLSEQHEPKKKVISRVAATVSSCLMGIVLLAALIKSAPVVETYKA 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 L ++ N+ IG+VL +Y P E + +L+ +MIGA+++ + ++ Sbjct: 121 EGLDYQSVNI--IGQVLLDEYLVPFEFASILLITAMIGAVLISKKEKK 166 >gi|53804531|ref|YP_113812.1| NADH dehydrogenase I, J subunit [Methylococcus capsulatus str. Bath] gi|53758292|gb|AAU92583.1| NADH dehydrogenase I, J subunit [Methylococcus capsulatus str. Bath] Length = 164 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 86/163 (52%), Gaps = 3/163 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FYL + +A+ ++F+VV N ++++ LI + + + +F LLGA F A++ +++Y Sbjct: 1 MELILFYLSALVAVAATFMVVIQCNTVHALLYLIVSLLASGFIFYLLGAFFAAVLEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+IV F+F++MML++ + E ++ G + ++ F++ + + Sbjct: 61 AGAIIVLFVFVVMMLNLGSKTIEQERQWLCPGIWHGPAALCAILFAELLFILMRSGTHEA 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + + +G L+ Y +E + +LL ++GA L Sbjct: 121 GRIVDS---KALGIALFGPYLLAVETASMLLLAGLVGAYHLGR 160 >gi|91209042|ref|YP_538903.1| NADH dehydrogenase subunit 6 [Solanum bulbocastanum] gi|122201800|sp|Q2MID4|NU6C_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|84371949|gb|ABC56267.1| NADH-plastoquinone oxidoreductase subunit 6 [Solanum bulbocastanum] Length = 176 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135 K L + GI + I + + ++ +++ +N + IG Sbjct: 86 YYKDFHLWTVGNGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 146 IHLSTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|89895328|ref|YP_518815.1| NADH dehydrogenase I chain J [Desulfitobacterium hafniense Y51] gi|89334776|dbj|BAE84371.1| NADH dehydrogenase I chain J [Desulfitobacterium hafniense Y51] Length = 163 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 87/160 (54%), Gaps = 4/160 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F++F+ +A+ S++ VVT +N ++S F L +F A L++LL AE++A + L+VY GA+ Sbjct: 1 MFFIFAIIAVASAWGVVTSKNIVHSAFFLALSFAGVAVLYVLLNAEYLAAVQLLVYAGAI 60 Query: 67 IVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + +F +M+ L D+ + P K+ G+ ++ IV A + S L+ Sbjct: 61 SIMVIFAVMLTLRGDVAESSPVTKKWTQGALVSALVF---IVLALVILTNSDWRILAMPA 117 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 G + K+L + Y P E + ++ +++IGA+++ Sbjct: 118 LAGGTTVELSKLLLSWYMVPFEAAAILITVALIGAVIIAK 157 >gi|253698807|ref|YP_003019996.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M21] gi|251773657|gb|ACT16238.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M21] Length = 160 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 5/165 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+ + + +I + +T R + ++ L+ +F A +F LLGA FVA + +++Y Sbjct: 1 MERIIFYILAAVTVIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPFVAALEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IMM+ E+A P K S + L L+V AS ++ + + Sbjct: 61 AGAIMVLFLFVIMMV----ELASPEKLPKPTLSDWWPALILVLVVVASLTVLVAGQAPPV 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V +VL+T+Y +E+ LL +++GA+ L R Sbjct: 117 PGAGAQT-VRQFSQVLFTRYGVAIELVSMQLLFALVGALYLGRRR 160 >gi|290489848|gb|ADD31331.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ehretia acuminata] Length = 176 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-------I 79 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 + S FI ++ L + + ++ +N + IG L Sbjct: 91 HLWTVGDGVTSMVCTSLFISLITTILDTSWYGIIWTTKSNQIIEQDL-ISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E ILL+++IGAI + + Sbjct: 150 TDFFLPFEFISIILLVALIGAIAVARQ 176 >gi|313896077|ref|ZP_07829631.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas sp. oral taxon 137 str. F0430] gi|320529343|ref|ZP_08030431.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas artemidis F0399] gi|312975502|gb|EFR40963.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas sp. oral taxon 137 str. F0430] gi|320138309|gb|EFW30203.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas artemidis F0399] Length = 164 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 3/161 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S FY+ + + +I + VV N ++S L+ +F+ A ++ +GAEF+ + L+VY G Sbjct: 2 SFIFYVLAAITVIGALGVVLSPNVVHSALFLVVSFIGVASMYFYIGAEFLGAVQLMVYSG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV V + IM+ D +A + G+LA +V + + + Sbjct: 62 AVAVLIVMAIMLTRRD-SMAHSNPSQKLFRRVVTGLLAGGFFFLMGLGIVLAPMPD--GM 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + I ++ Y P EI +LL +MIGA++L Sbjct: 119 LGAPTGAHEIAALMLGAYVLPFEIGAVLLLAAMIGALLLAR 159 >gi|254032046|ref|YP_001023796.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ10101] Length = 211 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 60/181 (33%), Positives = 86/181 (47%), Gaps = 45/181 (24%) Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 SVF LI F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ + E + + Sbjct: 26 SVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGEKERKKGEETG 85 Query: 91 GF----LGSFFIGILAAELIVCASNFMVFSAEGE-------------------------- 120 +G GILAAEL + ++ + E Sbjct: 86 RIGTPAIGILIGGILAAELASAVPDSIIKNYELTNILSDRNRDKSGLIGSEKESITTGIK 145 Query: 121 ---------------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 L+ G N+E IGKVLY Y Y + FILL++MIGAIVL L Sbjct: 146 NNIETGYPYDYFDYFLTLNGSGGTNMEAIGKVLYINYYYAFILVSFILLVAMIGAIVLGL 205 Query: 166 R 166 + Sbjct: 206 Q 206 >gi|161784246|ref|YP_001595562.1| NADH dehydrogenase ND6 subunit [Lemna minor] gi|221272328|sp|A9L9F0|NU6C_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|88696824|gb|ABD48549.1| NADH dehydrogenase ND6 subunit [Lemna minor] Length = 177 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84 NPIYS FSL + + ++LL + FVA L++YVGA+ V LF +M + Sbjct: 29 FTNPIYSAFSLGLVLICVSLFYILLNSYFVAAAQLLIYVGAINVLILFAVMFM--KGSEY 86 Query: 85 EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGK 136 +G ++ ++ + + ++ + +NV+ IG Sbjct: 87 SNDLNLWTVGDGVTSLVCTSILFLLISTISDTSWYGIIWTTKANHIIEQDLISNVQQIGI 146 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 147 HLSTDFFLPFELISIILLVALIGAISMARQ 176 >gi|320160453|ref|YP_004173677.1| putative NADH-quinone oxidoreductase subunit J [Anaerolinea thermophila UNI-1] gi|319994306|dbj|BAJ63077.1| putative NADH-quinone oxidoreductase chain J [Anaerolinea thermophila UNI-1] Length = 172 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 5/174 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F L + + + S+ +VV R I+S F LI A A F L A F A+I + Sbjct: 1 MSALQIVFLLIALLTLFSASMVVFARKTIHSAFWLILALFGVAATFATLEASFFAVIQVA 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVFSAEG 119 VY+GA+ + +F +M+ +E + G+ + + I +I + Sbjct: 61 VYIGAIAILIIFAVMLTRRSMEETGDQLLPGWGWAALVVLIAFGGIIYLLLQWQGVFQAP 120 Query: 120 ELSRLVFKGNNVENIGKVLY--TQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 ++ L G N+E +G L +Y P E++ +L+ +MIGAI + ++ Sbjct: 121 QV--LTAGGENLEALGIALVMPDRYVIPFEVASVLLVAAMIGAIYVAGDLKKRS 172 >gi|94502543|ref|YP_588170.1| NADH dehydrogenase subunit 6 [Helianthus annuus] gi|281190757|ref|YP_003330996.1| NADH dehydrogenase subunit 6 [Parthenium argentatum] gi|122179550|sp|Q1KXQ6|NU6C_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|88656947|gb|ABD47198.1| NADH-plastoquinone oxidoreductase subunit 6 [Helianthus annuus] gi|269924870|gb|ACZ52743.1| NADH dehydrogenase subunit 6 [Parthenium argentatum] Length = 176 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 10/148 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL FV + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 31 NPIYSAFSLGLVFVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFINGSEYSKDF 90 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138 +G ++ L V + ++ + +N + IG L Sbjct: 91 HL--WTVGDGVTSVVCTSLFVSLITTIPDTSWYGIIWTTKANQIIEQDLISNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E ILL+++IGAI + + Sbjct: 149 STDFFIPFEFISIILLVALIGAIAVARQ 176 >gi|95928464|ref|ZP_01311212.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Desulfuromonas acetoxidans DSM 684] gi|95135735|gb|EAT17386.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Desulfuromonas acetoxidans DSM 684] Length = 174 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 3/169 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + FY F + + F+ V R +++V L + AGL+ LG+ F+AM+ +++Y Sbjct: 7 IAEALFYAFMILTFMGGFMAVRSRMLMHAVLGLAVSLFGVAGLYFHLGSPFLAMMQILIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV + + +M+ + +++ + R + + + A + + + Sbjct: 67 VGAVCIMIVLGVMLGNTPDQLSSDKLSRRNM---LLALGACSTGFVTLFIAIQQTKFAPA 123 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 ++ IG+ L +Y E+ ILL ++IGAI+L R ++ Sbjct: 124 AEKIGDMSIRFIGENLLFKYCLAFELISVILLTAIIGAIILARGGREEV 172 >gi|41582338|gb|AAS07952.1| NADH-quinone oxidoreductase, J subunit [uncultured marine bacterium 463] Length = 169 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 87/164 (53%), Gaps = 3/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+ + +A+ S+ +T N +++ LI + + A +F L+GA F A + +V+Y Sbjct: 1 MLATLFYIAALIALTSTMAALTRANAAHALIYLIVSLLAVAVMFFLMGAPFAAALEVVIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IMML++ + ++ ++F+ A L++ ++ ++G S Sbjct: 61 AGAIMVLFVFVIMMLNLGDTGEDREREWLAGRNWFVPGAMAALLLIEMLMVLGDSQGVTS 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +G L+ Y +EI+ +LL S++GA L R Sbjct: 121 GNAVSP---KAVGIRLFGPYLLAVEIASMLLLSSLVGAYHLGRR 161 >gi|294056105|ref|YP_003549763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Coraliomargarita akajimensis DSM 45221] gi|293615438|gb|ADE55593.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Coraliomargarita akajimensis DSM 45221] Length = 193 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+FS + ++S+ L+V + + +I AF+ A LF+LL A +A + +VVY Sbjct: 1 MLDILFYVFSAITLLSALLMVVSPSAVNGALCMIVAFLGTAALFVLLEAYLLAALQVVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM--------- 113 GAV+V FLFIIM+LD+D K A +I+ + F+ Sbjct: 61 AGAVMVLFLFIIMLLDVDKGAGASDMKDKVSLGAASMGFALVVILVTTLFIGSGQLPEPE 120 Query: 114 ---VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + +++ G L+T+Y P +++GF+LL M+G IV+ + Sbjct: 121 LRDTVANPTGATGGFEFSTAMKSFGYSLFTKYMLPFQVAGFLLLAGMVGVIVVSKK 176 >gi|149390319|ref|YP_001294150.1| NADH-plastoquinone oxidoreductase subunit 6 [Chloranthus spicatus] gi|221272316|sp|A6MMH4|NU6C_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|146744239|gb|ABQ43311.1| NADH-plastoquinone oxidoreductase subunit 6 [Chloranthus spicatus] Length = 176 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI S FSL V + ++ + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPISSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLIVFAVMFMNGSEYYND 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--------GNNVENIGKV 137 +G F ++ ++ + ++ + +NV+ IG Sbjct: 90 FHL--WTIGDGFTSLVCTSILFSLITTIPDTSWYGIIWTTRSNQIIEQDLTSNVQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 148 LSTDFYLPFELISIILLVALIGAIAMARQ 176 >gi|114107186|ref|YP_740170.1| NADH-plastoquinone oxidoreductase subunit 6 [Daucus carota] gi|122221298|sp|Q0G9Q9|NU6C_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|113200961|gb|ABI32477.1| NADH-plastoquinone oxidoreductase subunit 6 [Daucus carota] Length = 176 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-------I 79 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 + S F+ ++ + + ++ +N + IG L Sbjct: 91 HLWTVGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTKSNQIVEQDL-ISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+S+IGAI + + Sbjct: 150 TDFFLPFELISIILLVSLIGAITVARQ 176 >gi|227537462|ref|ZP_03967511.1| possible NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|227242736|gb|EEI92751.1| possible NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] Length = 182 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 12/181 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ L FY F+ +AI S+ LVV ++N ++F AGL+L A+FVA+ ++ Sbjct: 1 MTLEELLFYAFAALAIGSALLVVNLKNTARALFLFFIVLFAMAGLYLFALADFVAITQIM 60 Query: 61 VYVGAVIVFFLFIIMMLDID----------IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 VYVG V++ +F M+ + + + P + L S F+ I+ ++ S Sbjct: 61 VYVGGVLILMIFAFMLSNKELLKDLQHASGKFLTLPNWQSLILSSVFLIIMITAVVEWQS 120 Query: 111 NFMVFSAEGELSRLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + ++ + NN++ +G TQY P E+ G L++++IGA L + Sbjct: 121 EVPAWIEQARINNTLIHPSDNNIQQLGFKFMTQYILPFELIGIFLMMTLIGAAHLSRKED 180 Query: 169 R 169 + Sbjct: 181 K 181 >gi|328952914|ref|YP_004370248.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca acetoxidans DSM 11109] gi|328453238|gb|AEB09067.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobacca acetoxidans DSM 11109] Length = 173 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 4/169 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + +L F + + + V RN ++V L + AG+F+ L + F+AM+ +++ Sbjct: 6 DLSNLSFLGVLAVTFGGAIIAVGARNIFHNVLGLALSLFGVAGIFVYLNSPFLAMMEILI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA+ + F IM+ + PRK G+ L A ++ + ++ + Sbjct: 66 YVGAICIAICFAIMLSEPLYLPKPPRKPLKIAGAG----LGAGVVFLMLSLLIKKTDWIP 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + ++ IG L T+YA E+ +LL++M+GAIV R Sbjct: 122 ASVRGDDWSIATIGHYLLTRYALIFEVISLVLLVAMLGAIVNARNGRNR 170 >gi|325126918|ref|YP_004286155.1| NADH-plastoquinone oxidoreductase subunit 6 [Fragaria vesca subsp. vesca] gi|324022830|gb|ADY15404.1| NADH-plastoquinone oxidoreductase subunit 6 [Fragaria vesca subsp. vesca] Length = 176 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ VV NPIYS FSL V + ++LL + FVA ++Y Sbjct: 7 IHDFLLIFLGSGLILGGIGVVLFTNPIYSAFSLGLVLVCISLFYILLNSYFVAAAQFLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK---RGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VGA+ V +F +M ++ + G I +I Sbjct: 67 VGAINVLIVFAVMFMNGSEYYQDFNLWTVGAGITLPVCTSIFVLLMITITDTSWYGIIWT 126 Query: 120 ELSRLVFK---GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S + + +N + IG L T + P E ILL+++IGAI + + Sbjct: 127 TRSNQIIEQDLISNSQQIGIHLSTDFFLPFEFISIILLVALIGAIAVARQ 176 >gi|290489856|gb|ADD31335.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Nelumbo nucifera] Length = 176 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 8/148 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78 NPIYS FSL V + ++ + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYND 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 + S F ++ L + + ++ +N + IG L Sbjct: 90 FHLWTIGDGVTSLVCTSIFFSLITTILDTSWYGIIWTTRSNQIIEQDL-ISNGQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFFLPFELISIILLVALIGAIAMARQ 176 >gi|110598461|ref|ZP_01386732.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium ferrooxidans DSM 13031] gi|110339911|gb|EAT58415.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Chlorobium ferrooxidans DSM 13031] Length = 173 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FY+F+ + ++S+ VV RN IYS F+L+F F A L++ L A+F+A+ +VVYVG Sbjct: 8 TVIFYIFAAITVLSAAFVVFTRNVIYSAFALLFTFFGVAALYVFLSADFIAVTQVVVYVG 67 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V LF +M + + + K L +L +I + S Sbjct: 68 GILVLLLFGVMFTN---SIMNAKPKSDVLHIIPGTLLLLAMIGALLYTFYTTHSWMPSET 124 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGF 151 + +G+ VE IG ++Y P E++ Sbjct: 125 MLQGSIVERIGFETMSRYVLPFEMASI 151 >gi|323148880|ref|YP_004221972.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium carvifolium] gi|316926344|gb|ADU58197.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium carvifolium] Length = 179 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78 N IYS FSL F+ + ++L FVA L++YVGA+ + LF +M ++ Sbjct: 30 TNLIYSAFSLGLVFICISLFYILANCHFVAAAQLLIYVGAINILILFAVMFINGSEYSKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 + F+ +++ L + + ++ +N + IG L Sbjct: 90 FHFGTVGDGATSLVCTTLFLSLISNILNTSWYGVIWTTKAAQIIEKDL-ISNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFFLPFELISIILLVALIGAISVARQQT 178 >gi|332669458|ref|YP_004452466.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas fimi ATCC 484] gi|332338496|gb|AEE45079.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Cellulomonas fimi ATCC 484] Length = 325 Score = 103 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 83/167 (49%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ + + ++++ ++ R +++ +++ ++ A L++ A F+ ++ +VV Sbjct: 24 TGETVLFWVLAPIMVLAALGLLFARKAVHAALAVVVVMISLAFLYVAQDAVFLGVVQVVV 83 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV++ FLF++M++ +D + RG + + +++ + Sbjct: 84 YTGAVMMLFLFVLMLVGVDASDSLVETIRGQRWIGALAGIGLGVVLAGVVGRAAYGPSQG 143 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +N I +++ +Y E+ G +L+ + +GA+V R R Sbjct: 144 LDSANEASNPVAIAHLVFGEYVLAFEVVGALLVTAALGALVYTHRTR 190 >gi|292559559|ref|YP_003540986.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera] gi|290790967|gb|ADD63222.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera] gi|294620632|gb|ADF28201.1| NADH-plastoquinone oxidoreductase chain 6 [Phoenix dactylifera] Length = 176 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIFSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYSND 89 Query: 86 PRKK---RGFLGSFFIGILAAEL-IVCASNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139 G IL + + I+ +++ S+++ + +N++ IG L Sbjct: 90 SYFWTIGDGVTSLVCTSILFSLITIIPDTSWYGIFWTTRSSQIIEQDLISNIQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+S+IGAI + + Sbjct: 150 TDFYLPFELISIILLVSLIGAITMARQ 176 >gi|78186624|ref|YP_374667.1| NADH dehydrogenase I subunit 6 [Chlorobium luteolum DSM 273] gi|78166526|gb|ABB23624.1| NADH dehydrogenase subunit J [Chlorobium luteolum DSM 273] Length = 177 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FYLF+ + ++S+ VV RN IYS FSL+F F A L++ L A+F+A+ +VVYVG Sbjct: 7 TAIFYLFAAITVLSAAFVVFSRNIIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V LF +M + +V K L +L + + S Sbjct: 67 GILVLLLFGVMFTN---KVMTTDLKADVLNVVPGALLFLGTLAGLLYTFYTTNGWMPSET 123 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGF 151 + +G+ VE IG +++ P E++ Sbjct: 124 MLEGSVVERIGFETMSRFVLPFEMASI 150 >gi|300770867|ref|ZP_07080744.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium spiritivorum ATCC 33861] gi|300762140|gb|EFK58959.1| NADH-quinone oxidoreductase subunit J [Sphingobacterium spiritivorum ATCC 33861] Length = 182 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 12/181 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ L FY F+ +AI S+ LVV ++N ++F AGL+L A+FVA+ ++ Sbjct: 1 MTLEELLFYAFAALAIGSALLVVNLKNTARALFLFFIVLFAMAGLYLFALADFVAITQIM 60 Query: 61 VYVGAVIVFFLFIIMMLDID----------IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 VYVG V++ +F M+ + + + P + L S F+ I+ ++ S Sbjct: 61 VYVGGVLILMIFAFMLSNKELLKDLQHASGKFLTLPNWQSLILSSAFLIIMITAVVEWQS 120 Query: 111 NFMVFSAEGELSRLV--FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + ++ NN++ +G TQY P E+ G L++++IGA L + Sbjct: 121 EVPAWIEQARINNTFIRPSDNNIQQLGFKFMTQYILPFELIGIFLMMTLIGAAHLSRKED 180 Query: 169 R 169 + Sbjct: 181 K 181 >gi|284042624|ref|YP_003392964.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Conexibacter woesei DSM 14684] gi|283946845|gb|ADB49589.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Conexibacter woesei DSM 14684] Length = 244 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 1/146 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F++ + A+ + VV +RNP YSV +L+ ++ + LFLLL AEF+A ++VY Sbjct: 1 MAEVIFFIAAIGALSGAIGVVALRNPFYSVLALVGHLLSLSALFLLLRAEFLAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV V ++F++ + D + + + + F+G+L EL + + + +GE Sbjct: 61 AGAVTVLYVFVVSYVGDGTVPLGPGGARLRNVAMLFVGMLFVELCIALLGSGLKAIDGEG 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147 + V E+IG+ L T++ P E Sbjct: 121 APYVPGFGTPESIGEALLTKFLLPFE 146 >gi|290489872|gb|ADD31343.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Gunnera manicata] Length = 176 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 8/149 (5%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------ 78 NPIYS FSL V + L++ + FVA L++YVGA+ V +F +M ++ Sbjct: 29 FTNPIYSAFSLGLVLVCISLLYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYK 88 Query: 79 -IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKV 137 S F+ ++ + + ++ +N++ IG Sbjct: 89 DFHFWTVGDGVTSLVCTSIFVSLITTISDTSWYGIIWTTRSNQIIEQDL-ISNIQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 148 LLTDFFLPFELISIILLVALIGAISVARQ 176 >gi|326772142|ref|ZP_08231427.1| NADH dehydrogenase I, J subunit [Actinomyces viscosus C505] gi|326638275|gb|EGE39176.1| NADH dehydrogenase I, J subunit [Actinomyces viscosus C505] Length = 328 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 81/171 (47%), Gaps = 4/171 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + + V+T + + + ++I ++ A L+++ + F+ + +VVY Sbjct: 22 EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 81 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+ LF+IM++ + + EP G + + IL + A +V+ + Sbjct: 82 GAVMTLVLFVIMLVGVGGD--EPVGAAGTVMRRPVLILLGLGLAGALTAVVWRSTLPKPA 139 Query: 124 LVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + G + LY + +E++ +L+++ +GA+ L R R + Sbjct: 140 GLKDGAKAAPDLLAVTLYHDHVVTMELTAILLIVAAVGALTLTHRQRIRAR 190 >gi|114329800|ref|YP_740618.1| NADH-plastoquinone oxidoreductase subunit 6 [Platanus occidentalis] gi|122165990|sp|Q09FZ3|NU6C_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|114054438|gb|ABI49832.1| NADH-plastoquinone oxidoreductase subunit 6 [Platanus occidentalis] Length = 176 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++ + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYND 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 +G +L + V + ++ + +N + IG Sbjct: 90 FHL--WTVGDGVTSLLCTSIFVSLITTIPDTSWYGVIWTTRSNQIIEQDLISNGQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 148 LSTDFFLPFELISIILLVALIGAIAMARQ 176 >gi|27464565|gb|AAO16136.1| NADH dehydrogenase subunit 6 [Alcyonium variabile] Length = 147 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+E IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLMLRHRRDI----------KRQDISKQLESN 183 +L + + RQD+ Q+ Sbjct: 114 LLAKQPNSPVLYNSHSESLRSRQDLFLQISRE 145 >gi|149390496|ref|YP_001294324.1| NADH-plastoquinone oxidoreductase subunit 6 [Illicium oligandrum] gi|221272326|sp|A6MMZ8|NU6C_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|147917449|gb|ABQ52573.1| NADH-plastoquinone oxidoreductase subunit 6 [Illicium oligandrum] Length = 177 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 8/172 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + +F I+ VV + NP+YS FSL V + + + FVA L++Y Sbjct: 7 IHDIFLVFLGSGLILGGLGVVLLTNPVYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V +F +M ++ + S ++ L + Sbjct: 67 VGAINVLIVFAVMFMNGSEYYNYFHLWTVGDGVTSLICTSILFSLIKTILDTSWYGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + ++ +NV+ IG L T + P E+ ILL++++GAI + + Sbjct: 127 TRSNQIIEQDL-ISNVQQIGIHLSTDFYLPFELISIILLVALVGAIAMARQE 177 >gi|255019916|ref|ZP_05291991.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus ATCC 51756] gi|254970696|gb|EET28183.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus ATCC 51756] Length = 198 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 113/194 (58%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +L FY+FS + ++S+ LV+T RNP+Y+ L+ AF NAA LFLLLGAEF+ +I ++ Sbjct: 1 MLVTTLLFYVFSAILLLSALLVITARNPVYASLYLVLAFFNAAALFLLLGAEFLGLILIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V FLF++MMLDI++ + + IL + Sbjct: 61 VYVGAVMVLFLFVVMMLDINLARLQEGFLHYLPLGLAVAILGVLELAAVFWTAPLGHVPA 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + L +N +G +LYTQY YP EI+ ILL+++I AI L LR R K QDI +QL Sbjct: 121 PAALPANADNTRALGGLLYTQYLYPFEIAAVILLIAIIAAIALTLRRRPQSKTQDIGRQL 180 Query: 181 ESNPDNSIVMVKVK 194 + +V ++ Sbjct: 181 AVKVSERLRLVDLR 194 >gi|110227131|ref|YP_665609.1| NADH dehydrogenase subunit 6 [Populus alba] gi|134093259|ref|YP_001109560.1| NADH dehydrogenase subunit 6 [Populus trichocarpa] gi|122237031|sp|Q14FA5|NU6C_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272342|sp|A4GYW9|NU6C_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|109945569|dbj|BAE97257.1| NADH dehydrogenase subunit 6 [Populus alba] gi|133712121|gb|ABO36764.1| NADH-plastoquinone oxidoreductase chain 6 [Populus trichocarpa] Length = 176 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + ++L + FVA L++YVGA+ V LF +M ++ + Sbjct: 30 TNPIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89 Query: 86 PRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKVLY 139 L S L LI SN + +N + IG L Sbjct: 90 FNLWTVGNGLTSLICTSLFVLLITIISNTTWYGIIWTTRANQIIEQDLVSNGQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E ILL+++IGAI + Sbjct: 150 TDFFLPFEFISIILLVALIGAIATARQ 176 >gi|115531974|ref|YP_784130.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium x hortorum] gi|122164265|sp|Q06FQ1|NU6C_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|112382128|gb|ABI17321.1| NADH-plastoquinone oxidoreductase subunit 6 [Pelargonium x hortorum] Length = 176 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ VV + NPIYS FSL F F+ + ++L + FVA L++Y Sbjct: 7 IHDFLLVFLGSGIILGGLGVVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFS--AE 118 VGA+ V LF +M ++ + L S IL LI + + Sbjct: 67 VGAINVLILFAVMFMNGSEYYKDFHLWTLGDGLTSLICTILFLSLITTILDTSWYGILWT 126 Query: 119 GELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + ++++ K +N + +G +L T + P E+ ILL++++GAI + Sbjct: 127 TKSNQIIEKDFISNSQQLGILLSTDFFLPFELMSIILLVALLGAIAAARQ 176 >gi|226953544|ref|ZP_03824008.1| NADH dehydrogenase I subunit J [Acinetobacter sp. ATCC 27244] gi|226835722|gb|EEH68105.1| NADH dehydrogenase I subunit J [Acinetobacter sp. ATCC 27244] Length = 173 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF- 126 V F+F++MML++ + E K ++ L + L+ +M+ S ++ Sbjct: 65 VLFVFVVMMLNLGQDTVEQESKWLTSDAWAFPALMSFLMGLILVWMLGSDYTTTGAVMGR 124 Query: 127 KGNNVENIGKVLYTQYAYPLEI 148 + + +G+ L+T Y +EI Sbjct: 125 EVVGPKAVGQALFTHYLLLVEI 146 >gi|116617161|ref|YP_817535.1| NADH-plastoquinone oxidoreductase subunit 6 [Coffea arabica] gi|122153672|sp|A0A388|NU6C_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|116242217|gb|ABJ89732.1| NADH-plastoquinone oxidoreductase subunit 6 [Coffea arabica] Length = 176 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-------I 79 NPIYS FSL F V + ++LL + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGFVLVCISLFYILLNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 + FI ++ + + + ++ N + IG L Sbjct: 91 HLWTIGDGVTSVVCTGLFISLITTIPDMSWYGIIWTTKSNQILEQDL-ITNSQQIGVHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELVSIILLVALIGAIAVARQ 176 >gi|156598690|gb|ABU85600.1| NADH-plastoquinone oxidoreductase subunit 6 [Scaevola aemula] Length = 176 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 6/146 (4%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N I S FSL F V + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 31 NSIDSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFINSSENSKDF 90 Query: 87 RKKR--GFLGSFFIGILAAELIVCA--SNFMVFSAEGELSRLVFKG--NNVENIGKVLYT 140 R + S L LI +++ + ++++ + +N + IG L T Sbjct: 91 RLWTVGDGVTSLVCTSLFLSLITTIPDTSWYRIIWTTKANQIIEQDLISNSQQIGIHLST 150 Query: 141 QYAYPLEISGFILLLSMIGAIVLMLR 166 + P E ILL+++IGAIVL + Sbjct: 151 DFFLPFEFISIILLVALIGAIVLARQ 176 >gi|169794125|ref|YP_001718489.1| NADH dehydrogenase subunit 6 [Manihot esculenta] gi|221272332|sp|B1NWK2|NU6C_MANES RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|157695937|gb|ABV66206.1| NADH-plastoquinone oxidoreductase subunit 6 [Manihot esculenta] Length = 176 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 +GS ++ + V + ++ + +N + IG Sbjct: 90 FNL--WTVGSGVTSLVCTSIFVSLITIIPDTSWYGIIWTTKTNQIIEQDLISNGQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E ILL+++IGAI + + Sbjct: 148 LSTDFFLPFEFISIILLVALIGAIAVARQ 176 >gi|326909443|ref|YP_004327714.1| NADH dehydrogenase subunit 6 [Hevea brasiliensis] gi|308523557|gb|ADO33607.1| NADH dehydrogenase subunit 6 [Hevea brasiliensis] Length = 176 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 +GS ++ + V + ++ + +N + IG Sbjct: 90 FNL--WTVGSGVTSLVCTSIFVSLITILPDTSWYGIIWTTRTNQIIEQDLISNGQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E ILL+++IGAI + + Sbjct: 148 LSTDFFLPFEFISIILLVALIGAIAVARQ 176 >gi|325210978|ref|YP_004286056.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium thurberi] gi|290775840|gb|ADD62336.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium thurberi] Length = 176 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGA+ V LF +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 +G+ ++ ++V ++ ++ + +N + IG Sbjct: 90 FNL--WTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E ILL+++IGAI + + Sbjct: 148 LATDFFLPFEFISIILLVALIGAIDVTRQ 176 >gi|322379667|ref|ZP_08053985.1| NADH dehydrogenase subunit J [Helicobacter suis HS5] gi|321147903|gb|EFX42485.1| NADH dehydrogenase subunit J [Helicobacter suis HS5] Length = 181 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FY F+ + + + +VV+ N +Y++ +L + V +G F LLGAEF+ ++ ++VY Sbjct: 2 FEVIAFYFFAILTLSMALIVVSTSNILYAMSALAASMVFISGFFFLLGAEFLGVVQILVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119 VGAVIV + F +M + EV E K + + +G + A L+V + Sbjct: 62 VGAVIVMYAFGMMFFNASEEVIERSHKPWLV--YILGGVFALLLVVILGAPALNNYAHHL 119 Query: 120 -----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ NV ++G ++T+Y E G +LL ++IG I LR +++ Sbjct: 120 SAENLQIVTPNLSTTNVHSMGYFVFTKYRIAFEAGGVMLLSALIGGITTALRKSYLSQKE 179 Query: 175 D 175 + Sbjct: 180 N 180 >gi|150406472|ref|YP_001315115.1| NADH dehydrogenase subunit 6 [Chlorokybus atmophyticus] gi|126507709|gb|ABO15106.1| NADH dehydrogenase subunit 6 [Chlorokybus atmophyticus] Length = 259 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 67/259 (25%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNA------------AGLFLL 48 M + F +FS +A+IS +V+ +NP++SV LI F + A +FL+ Sbjct: 1 MTAEQTLFSIFSSVALISGIMVIRAKNPVHSVLFLILVFCSTSGLLLLLGLDFFAMVFLV 60 Query: 49 LGAEFVAMITLVVYV--------------------GAVIVFFLFIIMM---------LDI 79 + +A++ L V + G + F+F +++ L I Sbjct: 61 VYVGAIAVLFLFVVMMLNIKMAEITENLLRYLPVGGLIGFIFVFEVLLVVDNDLIPLLSI 120 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE--------------------- 118 A + + S F LI N ++ + Sbjct: 121 TKPRASLLTEYFQIYSTFFFQSFIALIRGKINLTEWNLDRHDLVNDLEQAITNLTTIFQG 180 Query: 119 ----GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKR 173 E + N+E IG+++YT Y Y +S ILL++MIGAI+L + + +KR Sbjct: 181 TIHHNEWVSKIHNVTNIEAIGQLVYTYYFYYFLMSSLILLVAMIGAILLTMHKGMKSVKR 240 Query: 174 QDISKQLESNPDNSIVMVK 192 Q+I +Q +I ++ Sbjct: 241 QEIFEQNARQFSKTIQKIR 259 >gi|27464562|gb|AAO16134.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-NZ2] Length = 147 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+E IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLML----------RHRRDIKRQDISKQLESN 183 +L RQD+ Q+ Sbjct: 114 LLAKQPNSPFVYNPHGESLRSRQDLFLQISRE 145 >gi|294649468|ref|ZP_06726892.1| NADH-quinone oxidoreductase subunit J [Acinetobacter haemolyticus ATCC 19194] gi|292824638|gb|EFF83417.1| NADH-quinone oxidoreductase subunit J [Acinetobacter haemolyticus ATCC 19194] Length = 173 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF- 126 V F+F++MML++ + E K ++ L + L+ +M+ S ++ Sbjct: 65 VLFVFVVMMLNLGQDTVEQESKWLTSDAWAFPALMSFLMGLILVWMLGSDYTTSGAVMGR 124 Query: 127 KGNNVENIGKVLYTQYAYPLEI 148 + + +G+ L+T Y +EI Sbjct: 125 EVVGPKAVGQALFTHYLLLVEI 146 >gi|254480852|ref|ZP_05094098.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily protein [marine gamma proteobacterium HTCC2148] gi|214038647|gb|EEB79308.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily protein [marine gamma proteobacterium HTCC2148] Length = 169 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 3/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+ + +A+ S+ +T N +++ LI + + A +F L+GA F A + +V+Y Sbjct: 1 MLATLFYIAALIALTSTMAALTRANAAHALIYLIVSLLAVAVMFFLMGAPFAAALEVVIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IMML++ + ++ ++F+ A L++ ++ +G S Sbjct: 61 AGAIMVLFVFVIMMLNLGDTGEDREREWLAGRNWFVPGAMAALLLIEMLMVLGDFQGVTS 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +G L+ Y +EI+ +LL S++GA L R Sbjct: 121 GNAVSP---KAVGIRLFGPYLLAVEIASMLLLSSLVGAYHLGRR 161 >gi|319901161|ref|YP_004160889.1| NADH dehydrogenase subunit J [Bacteroides helcogenes P 36-108] gi|319416192|gb|ADV43303.1| NADH dehydrogenase subunit J [Bacteroides helcogenes P 36-108] Length = 170 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 7/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++++ FY + + S L VT + S L+F AG++ LLG F+ + ++ Sbjct: 3 ITLETVVFYFLAAFITVFSILTVTTHRMVRSATYLLFVLFGTAGIYFLLGYTFLGSVQVM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ + +VA K+ FL A +++ + F A + Sbjct: 63 VYAGGIVVLYVFSILLTSGEGDVAAKLKRSKFLAGLGATAGGAVIVLFITLNHKFIATTD 122 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + L N+ IG + + Y P E +LL ++G I++ + Sbjct: 123 VQPLEV---NIRTIGHHMLSGEKYGYLLPFEAVSILLLACIVGGILIARKR 170 >gi|220904924|ref|YP_002480236.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869223|gb|ACL49558.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 214 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 1/144 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +FF + + ++ L + +RNP++ V ++ FV+ A ++L L AEF+A + +VVY G Sbjct: 4 EIFFLYCAVVIVVCGILSIRLRNPVHCVLLVLLLFVHMAAVYLTLQAEFLAAVQIVVYAG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGELSR 123 AV+V +LF++ ++++ E+ P + IGI L L+ FM + Sbjct: 64 AVLVMYLFVVFLVNLKREMRMPALVPHPWVGYAIGIALCGTLLWGLRFFMAGGKDVWPYE 123 Query: 124 LVFKGNNVENIGKVLYTQYAYPLE 147 + + + + + L+T LE Sbjct: 124 ALREATHTRALSRELFTHNFLALE 147 >gi|254282451|ref|ZP_04957419.1| NADH dehydrogenase i chain j [gamma proteobacterium NOR51-B] gi|219678654|gb|EED35003.1| NADH dehydrogenase i chain j [gamma proteobacterium NOR51-B] Length = 169 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 82/164 (50%), Gaps = 3/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L FYL + +A+ ++ + +T N +++ LI + + A +F +LGA F A + +++Y Sbjct: 1 MTVLLFYLTAALAVFATVVALTRANAAHALIYLILSLLAVAVMFFMLGAPFAAALEVLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IMML++ E + + + L +++ + + S Sbjct: 61 AGAIMVLFVFVIMMLNLGDAGEEQERGWLDARLWIVPGLLTTVLLVEMLLVFGESGVTTS 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +G LY Y +E++ +L+ +++GA + R Sbjct: 121 GHSVSP---KEVGISLYGPYVLAVELASMLLMAALVGAYHVARR 161 >gi|153007184|ref|YP_001381509.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. Fw109-5] gi|152030757|gb|ABS28525.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. Fw109-5] Length = 170 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 87/153 (56%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F++F+ ++++ VV RNP+Y+ +L+ AF AG+++LL A +A++ ++V Sbjct: 4 TAELVIFWIFAIPLLLTAMGVVVARNPVYAAMNLVAAFFFMAGIYVLLAAHLIALMQILV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV+V FLF+IM+L E E ++R IG ++ ++ A+ V + Sbjct: 64 YAGAVMVLFLFVIMLLSTGEEHRERERRRVMQYVGAIGAVSLFAVLVAAIARVPDSAMGA 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 + V+ +G+VLYT+Y P E++ +LL Sbjct: 124 LAQPDRFGTVKAVGQVLYTEYLLPFEVTSLLLL 156 >gi|197131418|gb|ACH47227.1| NADH-plastoquinone oxidoreductase subunit 6 [Sarcocaulon vanderietiae] Length = 176 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78 NPI+S FSL F F+ + ++L FVA L++YVGA+ V LF +M ++ Sbjct: 30 TNPIFSAFSLGFVFICISLFYILANCHFVAASQLLIYVGAINVLILFAVMFMNGSEYSKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 +++ + F+ I++ L + + ++ +N + IG L Sbjct: 90 LNLGTVGDGTTSLVCTTLFLSIISNILDTSWYGIIWTTRANQIIEKDL-ISNSQQIGIRL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFFLPFELISIILLVALIGAIAVARQ 176 >gi|262373367|ref|ZP_06066646.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter junii SH205] gi|262313392|gb|EEY94477.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter junii SH205] Length = 173 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F A + ++VY GA++ Sbjct: 5 FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAAALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-F 126 V F+F++MML++ E E K ++ + + ++ +M+ +S + Sbjct: 65 VLFVFVVMMLNLGQETVEQESKWLTSDAWAYPAMLSFILGLTLVWMLNGEYTTISAPMGL 124 Query: 127 KGNNVENIGKVLYTQYAYPLE 147 + + +G+ L+T Y +E Sbjct: 125 EIVGPKAVGQALFTHYLLLVE 145 >gi|27464553|gb|AAO16128.1| NADH dehydrogenase subunit 6 [Alcyonium coralloides] gi|27464556|gb|AAO16130.1| NADH dehydrogenase subunit 6 [Alcyonium glomeratum] gi|27464559|gb|AAO16132.1| NADH dehydrogenase subunit 6 [Alcyonium glomeratum] Length = 147 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+E IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYINNPVIGSRTNIEAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLML----------RHRRDIKRQDISKQLESN 183 +L RQD+ Q+ Sbjct: 114 LLAKQPNSPFLYNSHSESLRSRQDLFLQISRE 145 >gi|91208953|ref|YP_538987.1| NADH dehydrogenase subunit 6 [Gossypium hirsutum] gi|122201415|sp|Q2L958|NU6C_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|85687467|gb|ABC73679.1| NADH-plastoquinone oxidoreductase subunit 6 [Gossypium hirsutum] Length = 176 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGA+ V LF +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 +G+ ++ ++V ++ ++ + +N + IG Sbjct: 90 FNL--WTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E ILL+++IGAI + + Sbjct: 148 LATDFFLPFEFISIILLVALIGAIAVARQ 176 >gi|51892733|ref|YP_075424.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM 14863] gi|51856422|dbj|BAD40580.1| NADH dehydrogenase I subunit J [Symbiobacterium thermophilum IAM 14863] Length = 168 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 2/164 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + MA+ V+ + P+Y V S +FAF+ A L+L L +EF+A+I L+VY GA+ Sbjct: 4 LFIIAGLMAVAGVLGVILAKPPVYQVMSTVFAFLGLAALYLSLQSEFLAVIQLIVYGGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE--LSRL 124 ++ FLF+I +L + E + + L+V + +F EG +++ Sbjct: 64 MILFLFVITLLTARRDPVEKDAGQLTRPKLIGYAVGGALLVMLAIVGLFGGEGRIGWTQV 123 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 V+ G L T +P EI FIL++++IG ++L+ RHR Sbjct: 124 PADFGQVKAFGYELLTTNVFPFEILAFILMVAVIGVMLLVGRHR 167 >gi|317121162|ref|YP_004101165.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermaerobacter marianensis DSM 12885] gi|315591142|gb|ADU50438.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermaerobacter marianensis DSM 12885] Length = 222 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F + + + ++ ++ VVT +S L FV AGLF+LL A A++ ++ Sbjct: 1 MTGAAVIFAILAAVVLLGAWRVVTSEQIAHSALFLGLTFVGMAGLFVLLQAPTFALLHVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCASNFMV 114 VYVGA++ +F IM+ D + R +R L ++ I V + + Sbjct: 61 VYVGAILTVVVFAIMLSDPEELRGAGDLPPGERLRRRLLSPYYGWIPVVVAGVLVAVVLA 120 Query: 115 FSAEGELSRLVFK---GNNVENIGKVLYTQYAYPLEI 148 A +L R+ +++ IG+ ++T+YA P E+ Sbjct: 121 SLAAAQLPRVPLGEPVADDLRAIGRDMFTRYALPFEV 157 >gi|195953126|ref|YP_002121416.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobaculum sp. Y04AAS1] gi|195932738|gb|ACG57438.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Hydrogenobaculum sp. Y04AAS1] Length = 165 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L F + S +AI+S+ + V++PI+ + + ++ A F L A+ +A + LV+Y Sbjct: 1 MELLVFVVISIIAIVSALGAILVKSPIHVMVWFLGFILSVAASFFALKADLLAGLQLVIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 A++VF++ +I + + + + F + A + AS ++V S+ Sbjct: 61 AVAIVVFYVLVITTIPWE---KVKMFEGFYKKEFVFALPAFLFTIGASIYLVISSRFSNL 117 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 R +NV +G VL+T+Y P E++ FILL++MIGAI+ Sbjct: 118 RQPLPKDNVSALGTVLFTKYIAPFELASFILLIAMIGAII 157 >gi|149390594|ref|YP_001294238.1| NADH-plastoquinone oxidoreductase subunit 6 [Buxus microphylla] gi|221272312|sp|A6MM90|NU6C_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|146762339|gb|ABQ45303.1| NADH-plastoquinone oxidoreductase subunit 6 [Buxus microphylla] Length = 176 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 8/152 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD--- 78 VV + NPI+S FSL + + + FVA L++YVGA+ V +F +M + Sbjct: 26 VVLLTNPIFSAFSLGLVLFCISLFHIPSNSHFVAAAQLLIYVGAINVLIIFAVMFTNGSE 85 Query: 79 ----IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 + S F+ ++ L + + ++ +N + I Sbjct: 86 YYNDFHVWTVGDGVTSLVCTSIFVSLITTILDTSWYGIIWTTRSNQIIEQDL-ISNGQQI 144 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 G L T + P E+ ILL+++IGAI + + Sbjct: 145 GIHLSTDFFLPFELVSIILLVALIGAIAMARQ 176 >gi|260171807|ref|ZP_05758219.1| NADH dehydrogenase I, chain J [Bacteroides sp. D2] gi|315920119|ref|ZP_07916359.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693994|gb|EFS30829.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 170 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 7/159 (4%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++++ FY + I S + VT + + S L+F AG++ LLG F+ + ++V Sbjct: 4 TLETVVFYFLAAFIIAMSIMTVTTQRIVRSATYLLFVLFGTAGIYFLLGYTFLGSVQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V ++F I++ + + AE K+ L I +I+ + F + Sbjct: 64 YAGGIVVLYVFSILLTSGEGDRAEKVKRSKLLAGLITMIAGLAIILTITLKHNFM---QT 120 Query: 122 SRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLS 156 + L + ++ IG L + Y P E +LL Sbjct: 121 ANLAPQEIDIHAIGNALLSSDKYGYILPFEAVSILLLAC 159 >gi|301165397|emb|CBW24968.1| putative NADH dehydrogenase chain J [Bacteriovorax marinus SJ] Length = 174 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F L + + + ++ VV RN +++ L+ + AGL+ LGA+F+A +VVY G Sbjct: 4 NIMFILSALLTLAGAYGVVASRNIMHACVYLLASLFGIAGLYATLGADFLAATQMVVYAG 63 Query: 65 AVIVFFLFIIMMLDIDIEV-----AEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AE 118 V++ LF IM+ E G + +F IG L+A ++ + ++ + Sbjct: 64 GVVILMLFAIMLTGGHKEAMNRFGINKIPSMGTVRTFVIGTLSALVLGSVAFKIIAGMTK 123 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 L VE +G +L T + EIS +LL +++GA V+ ++ Sbjct: 124 HVPGELPEFTTTVEKLGVLLLTDHILAFEISSVLLLGALVGAAVISRPRKQ 174 >gi|298373154|ref|ZP_06983144.1| NADH dehydrogenase I, J subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298276058|gb|EFI17609.1| NADH dehydrogenase I, J subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 172 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 76/168 (45%), Gaps = 4/168 (2%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 + +I S + +T ++ + S L+ + AG +L L F+A + + VY G V+V F+ Sbjct: 2 AVAMLIMSVMAITTKSLLRSATYLLLTLICTAGFYLFLNYHFLAAVQVSVYAGGVVVLFV 61 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 F I + EV + R ++ I ++ L+ F S ++ Sbjct: 62 FAIFLTTKKDEVLVKHEYRRYVYGALIALVGIGLVAYTILKTKFIYAANPSMEGDAQLSM 121 Query: 132 ENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 +IG L Q+ P E+ +LL +++G I++ + ++ ++++ Sbjct: 122 ADIGTALMGTGKYQFLLPFEMLSLLLLAAIVGGILIARKDKKHGEKEE 169 >gi|71892258|ref|YP_277992.1| NADH dehydrogenase I chain J [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796364|gb|AAZ41115.1| NADH dehydrogenase I chain J [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 183 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 2/161 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY+ AI+S+ V+ NP+ ++ LI +F++ + F LGA F A + ++VY G Sbjct: 2 TALFYISGITAILSTICVILHYNPMRALLYLIVSFLSISCNFFSLGASFAAALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF--IGILAAELIVCASNFMVFSAEGELS 122 A+++ F+F IMML+ + +K+ FL L ++ ++ F + + Sbjct: 62 AIMILFVFAIMMLNTKNIIFGIQKESRFLNPILCCGSALLVGILFAVLLYISFVLKDDFI 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + + + +G L+ Y +E++ F+LL ++I L Sbjct: 122 NVNNSIIDSKQVGVALFGPYILTVELASFLLLGALISVFHL 162 >gi|317153006|ref|YP_004121054.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Desulfovibrio aespoeensis Aspo-2] gi|316943257|gb|ADU62308.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio aespoeensis Aspo-2] Length = 169 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 3/167 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+ + F +++ + I S V+ + + ++ LI V AG++LLL + F+A + L++ Sbjct: 3 VLAKVAFGIYTAVIIGGSVFAVSSTSLVRALVGLITTLVGVAGMYLLLASPFMAFMQLLI 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V F +M+ E + ++ G+ A ++V + + Sbjct: 63 YVGAVSVLIFFAVMLT--RAESGGDESAPAPMKTYVFGLAATIAPAAVLGWLVMTRPVQ- 119 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 S + +++ +G+ L Y P E+ IL+++M GA++L R Sbjct: 120 SIAIPTEVDIKQLGEGLLGTYFLPFELISVILMVAMAGAVLLTWEKR 166 >gi|256390060|ref|YP_003111624.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora acidiphila DSM 44928] gi|256356286|gb|ACU69783.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Catenulispora acidiphila DSM 44928] Length = 195 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 1/162 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ L VTVRN +++ L+ A AG +LLL AEFVA + +++YVG Sbjct: 14 EITFVLVGLLTFGAAVLTVTVRNLVHAALWLVVALGGLAGCYLLLAAEFVAWVQVLIYVG 73 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV V LF +M+ I + +G+ A ++V V + + R Sbjct: 74 AVAVLLLFGLMLTRAPIGRTTELDSGNRWAAAVVGLATAGVLVTVIGDAVRTTWFDPRRN 133 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 V G + +G L+ + P E+ +LL +++GAIVL R Sbjct: 134 VVNGT-AKAVGSSLFRYWVLPFELLSVLLLAALVGAIVLSRR 174 >gi|11467927|ref|NP_057988.1| NADH dehydrogenase subunit 6 [Scenedesmus obliquus] gi|8099192|gb|AAF72047.1|AF204057_2 NADH dehydrogenase subunit 6 [Scenedesmus obliquus] gi|7711049|emb|CAB90373.1| NADH dehydrogenase subunit 6 [Scenedesmus obliquus] Length = 219 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 28/216 (12%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L + A++S FL++ +NP++SVF L+ F++ +GL +LLG E+ ++ L+VYVGA+ Sbjct: 5 FALIATGALMSVFLMMRSKNPVHSVFYLVLLFLHCSGLLVLLGLEYFVLLQLLVYVGALA 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + FLF++M+LDI ++ + + +G+ + A + + + S + Sbjct: 65 ILFLFVVMLLDIPSTEILRHQRGTYPVAGVLGLCLILSALLAFTQPLVESPFQTSPIPTT 124 Query: 128 GN--------------------------NVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 V N+G LY +A L I +LL++M+GA+ Sbjct: 125 STFTGQNSDFVSSSRHYSFWNNYRTATSTVANLGIRLYGVHADLLIIRSLLLLVAMVGAV 184 Query: 162 VLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 L L+ + QD+ +Q + S +V++ K Sbjct: 185 GLTLKRPVSVPNQDVFRQHYVDFQKS--LVQIPQNK 218 >gi|329944211|ref|ZP_08292470.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces sp. oral taxon 170 str. F0386] gi|328530941|gb|EGF57797.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces sp. oral taxon 170 str. F0386] Length = 331 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 80/171 (46%), Gaps = 4/171 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + + V+T + + + ++I ++ A L+++ + F+ + +VVY Sbjct: 30 EAIVFGVVALVTVACGIGVLTAKRAVTAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 89 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+ LF+IM++ + + EP G + + IL + +V+ A Sbjct: 90 GAVMTLVLFVIMLVGVGGD--EPVGAAGSVMRRPVLILLGLGLAGFLAAVVWRAALPTPA 147 Query: 124 LVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + G + LY + +E++ +L+++ +GA+ L R R + Sbjct: 148 GLKDGAKAAPDLLAVTLYNDHVVTMELTAILLIVAAVGALTLTHRQRIRAR 198 >gi|114107099|ref|YP_740255.1| NADH-plastoquinone oxidoreductase subunit 6 [Liriodendron tulipifera] gi|122221283|sp|Q0G9G6|NU6C_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|113201047|gb|ABI32562.1| NADH-plastoquinone oxidoreductase subunit 6 [Liriodendron tulipifera] Length = 176 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + + FVA L++YVGAV V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMNGSEYSKD 89 Query: 86 PRKK---RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK---GNNVENIGKVLY 139 G IL + + + S + + +NV+ IG L Sbjct: 90 LYLWTVGDGVTSLVCTSILFSLITTISDTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFYLPFELISIILLVALIGAISMARQ 176 >gi|197116571|ref|YP_002136998.1| NADH dehydrogenase I subunit J [Geobacter bemidjiensis Bem] gi|197085931|gb|ACH37202.1| NADH dehydrogenase I, J subunit [Geobacter bemidjiensis Bem] Length = 160 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 5/165 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+ + + +I + +T R + ++ L+ +F A +F LLGA FVA + +++Y Sbjct: 1 MERTIFYILAAVTVIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPFVAALEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IMM+ EVA P K S + L L+V AS ++ + + Sbjct: 61 AGAIMVLFLFVIMMV----EVASPEKLAKPAFSDWWPALVLVLVVVASLTVLVTGQAPPV 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V +VL+T+Y +E+ LL +++GA+ L R Sbjct: 117 PGAGAQT-VRQFSQVLFTRYGVAIELVSMQLLFALVGALYLGRRR 160 >gi|262376769|ref|ZP_06069997.1| NADH dehydrogenase subunit I J [Acinetobacter lwoffii SH145] gi|262308479|gb|EEY89614.1| NADH dehydrogenase subunit I J [Acinetobacter lwoffii SH145] Length = 173 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 83/141 (58%), Gaps = 1/141 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+FL++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTVRVVTNANPVHALLSLIVSLLAVAGMFLIVGAPFAGALEVIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F++MML++ + E +K ++ L + LI +++ S + S ++ Sbjct: 65 VLFVFVVMMLNLGEQTVEQERKWLTSSAWAYPALMSFLIGLVLVWVLNSDYTQASLVMGT 124 Query: 128 G-NNVENIGKVLYTQYAYPLE 147 + +G+ L+TQY +E Sbjct: 125 EMVGPKAVGQALFTQYLLLVE 145 >gi|122202878|sp|Q2QD38|NU6C_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|74027151|gb|AAZ94701.1| NADH dehydrogenase subunit 6 [Cucumis sativus] gi|115432853|gb|ABI97466.1| NADH-plastoquinone oxidoreductase subunit 6 [Cucumis sativus] gi|115498355|gb|ABI98797.1| NADH-plastoquinone oxidoreductase subunit 6 [Cucumis sativus] Length = 176 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + L I+ S V+ N IYS FSL V+ + ++L A+FVA L++Y Sbjct: 7 IHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M + +G+ ++ + V +V ++ + Sbjct: 67 VGAINVLIIFAVMFM--KGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL ++IGAI + + Sbjct: 125 WTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176 >gi|194132141|gb|ACF33395.1| NADH-plastoquinone oxidoreductase subunit 6 [Gonystylus bancanus] Length = 176 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCA------SNFMVFSAEGELSRLVFKG--NNVENIGKV 137 +G ++ ++V ++ ++++ + +N + IG Sbjct: 90 LNL--WIVGDGVTSLVCTSILVSLITTIFDMSWYGIIWTTRSNQIIEQDLISNSQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+ +IGAI + + Sbjct: 148 LSTDFFLPFELISIILLVGLIGAIAVARQ 176 >gi|332296564|ref|YP_004438487.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermodesulfobium narugense DSM 14796] gi|332179667|gb|AEE15356.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermodesulfobium narugense DSM 14796] Length = 171 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 1/168 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + LFF F+ +I+ S +V+T +N I++V + FV+ +G++L L AEF AMI ++ Sbjct: 1 MSVPVLFFSYFALASIVISLIVITRKNYIHAVLWTLLLFVHISGIYLFLNAEFFAMIQMI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V +F+IM+L++ E + F+ ++ + G+ Sbjct: 61 VYAGAILVMLIFVIMLLNVKHEDHLSDVSSLSIPKAFLVFCVLGVLAIVLQTSYLNTTGK 120 Query: 121 LS-RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 S LV K ++ + +G++ Y++ PL I G +L + MI AIVL + Sbjct: 121 FSIDLVNKVSDAKLLGQIFYSEANLPLIIMGVVLFVPMIAAIVLAGKR 168 >gi|108761433|ref|YP_629344.1| NADH dehydrogenase I subunit J [Myxococcus xanthus DK 1622] gi|108465313|gb|ABF90498.1| NADH dehydrogenase I, J subunit [Myxococcus xanthus DK 1622] Length = 168 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 78/155 (50%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ + F F+ + ++S+ V+ R+PI S +L+ F AG+++LL A VA++ ++ Sbjct: 1 MNIELILFGAFALLTLLSAGTVIFARSPINSAMALVSTFFFMAGIYVLLWAHTVAVMQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V FLF+IM+L++ + + + ++ + Sbjct: 61 VYAGAIMVLFLFVIMLLNLGESPTRGKPTVARVAGGAATVGLFAVLAIILLKLPAEPATL 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155 + + +G+V++TQ+ +P E +LL+ Sbjct: 121 STGAQASFGTIATMGQVIFTQWLFPFEAVSLLLLV 155 >gi|28261772|ref|NP_783285.1| NADH dehydrogenase subunit 6 [Atropa belladonna] gi|75248022|sp|Q8S8U6|NU6C_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|20068386|emb|CAC88099.1| NADH degydrogenase ND6 subunit [Atropa belladonna] Length = 176 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 16/151 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN-----GSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135 K L + GI + I + + ++ +++ +N + IG Sbjct: 86 YYKDFHLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL ++IGAI + + Sbjct: 146 IHLSTDFFLPFELISIILLDALIGAIAVARQ 176 >gi|62263478|gb|AAX78164.1| unknown protein [synthetic construct] Length = 202 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 93/169 (55%), Gaps = 10/169 (5%) Query: 32 VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91 + +IF F+ A ++++L ++A++ +VVYVGAV+V FLF++ MLD+ +E +G Sbjct: 24 MLEMIFTFIFTAAVWIILQQVYLALLLIVVYVGAVLVMFLFVVFMLDLHVEE------QG 77 Query: 92 FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGKVLYTQ-YAYPLEI 148 +G FF + A + + + ++A + + +G ++ IG +++ Y E+ Sbjct: 78 RVGRFFYALAAVVVCAIFATVISYAATNVFAGAMMQGGVGGLKIIGLTMFSNANLYVFEL 137 Query: 149 SGFILLLSMIGAIVLMLR-HRRDIKRQDISKQLESNPDNSIVMVKVKSG 196 FILL +M AI L LR R+ K D ++Q++ + + MVK+ S Sbjct: 138 VDFILLAAMTAAITLTLRAKRKGNKTVDPAQQVKVRAKDRLTMVKMPSN 186 >gi|78221390|ref|YP_383137.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter metallireducens GS-15] gi|78192645|gb|ABB30412.1| NADH dehydrogenase subunit J [Geobacter metallireducens GS-15] Length = 161 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+S FY+ + + + + +T ++ ++++ L+ +F A +F LLGA VA+ +++Y Sbjct: 1 MESALFYILAVVTVTGTAFAITEKHAVHAIVYLVTSFFALAVIFFLLGAPVVAIFEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IMMLD+ P + R + LA + AS + + Sbjct: 61 AGAIMVLFLFVIMMLDL----GHPERARLPGIREWWPALALGAVTLASALALVVSRAPAI 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 K V+ L+ +Y +E+ LL +++GA+ L + Sbjct: 117 PAPGKAIGVKEFALALFGKYGVAVEVISMQLLFALVGALYLARKR 161 >gi|206890506|ref|YP_002248944.1| NADH-quinone oxidoreductase chain j [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742444|gb|ACI21501.1| NADH-quinone oxidoreductase chain j [Thermodesulfovibrio yellowstonii DSM 11347] Length = 171 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 1/170 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F F + S + +T +NP+++V L+ F++ A ++L L AEF+AM+ ++VY Sbjct: 1 MIYFIFAYFCLATLGISIMSLTRKNPVHAVLWLLLLFLHVAVIYLFLNAEFLAMVQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEGEL 121 GA++V FLF + +L R G IG+ + A L+ S+ + Sbjct: 61 AGAILVMFLFTLFLLGARQLPKHKRYTSILEGRLLIGLSITATLLAVFSSIKAEYSGKYT 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + V N + IG +L+ +Y+ + I G ILL+ MI VL R + D Sbjct: 121 IKYVHDVGNTKAIGAMLFNEYSLAVLILGVILLIPMIAVSVLAWRRKDDT 170 >gi|139389151|ref|YP_001123868.1| NADH dehydrogenase subunit 6 [Nasturtium officinale] gi|221272333|sp|A4QLY8|NU6C_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134287074|dbj|BAF50693.1| NADH dehydrogenase ND6 [Nasturtium officinale] Length = 176 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139 + L S + S G + +N + IG L Sbjct: 90 SNLWTVGNGITSLVCTTILFSLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176 >gi|326200332|gb|ADZ52371.1| NADH dehydrogenase subunit 6 [Asclepias syriaca] Length = 176 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M I+ VV + N IYS FSL V + ++LL + FVA L++Y Sbjct: 7 MHDFLLVFLGSGLILGGLGVVLLPNSIYSAFSLGLVLVCISLFYILLSSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V LF +M + + R +G ++ L + + ++ + Sbjct: 67 VGAVNVLILFAVMFMSDSEYYKDSRL--WTVGDGVTLVVCTSLFISLITTIPDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL+++IGAI + + Sbjct: 125 WTTRSNQVLEQDLISNSQQIGIHLSTDFFLPFELISLILLVALIGAIAVARQ 176 >gi|159161214|ref|YP_001542500.1| NADH-plastoquinone oxidoreductase subunit 6 [Ceratophyllum demersum] gi|221272315|sp|A8SEF8|NU6C_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|148508497|gb|ABQ81504.1| NADH-plastoquinone oxidoreductase subunit 6 [Ceratophyllum demersum] gi|227481172|emb|CAP62551.1| NADH dehydrogenase ND6 subunit [Ceratophyllum demersum] Length = 176 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 10/147 (6%) Query: 28 PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87 PIYS FSL FV + ++ + FVA L++YVGAV V +F +M ++ + Sbjct: 32 PIYSAFSLGLVFVCISLFYIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMNGSEYYKDFH 91 Query: 88 KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--------GNNVENIGKVLY 139 +G ++ ++ ++ ++ + +NV+ +G L Sbjct: 92 L--WTVGDGITSLVCTSILFSLITTILETSWYGIIWTTRSNQIIEQDLTSNVQQMGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E++ ILL+++IGAI + + Sbjct: 150 TDFYLPFELTSIILLVALIGAIAMARQ 176 >gi|156743325|ref|YP_001433454.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus castenholzii DSM 13941] gi|156234653|gb|ABU59436.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Roseiflexus castenholzii DSM 13941] Length = 170 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 4/164 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + + +AI+ + ++ N I+S L+ FV + L++LL A F+ +I L+VY Sbjct: 1 MELIIFLITAAVAIVGAVAMLLSPNAIHSAIFLLINFVAISVLYVLLYAPFLFVIQLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+IV FLF++M+L + + F +G+ A +++ ++V + Sbjct: 61 AGAIIVLFLFVVMLLGAERAED---TRERFAWQRPLGLTLAAILLGLIGYIVLRGPASGA 117 Query: 123 RLVF-KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + + E I + L+T Y P EI+ F+LL +++G +VL + Sbjct: 118 MVADQQFAAPERIAETLFTTYLLPFEITAFLLLAAIVGVVVLHM 161 >gi|291515385|emb|CBK64595.1| NADH dehydrogenase subunit J [Alistipes shahii WAL 8301] Length = 169 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 8/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++ + F + + +S+ L VT R + + L+F AG++ L F+ + L+ Sbjct: 3 ITLELIVFTVLALFIGVSAILAVTTRRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y G + V ++F I++ + AE K F+G+ AA + ++ + Sbjct: 63 IYAGGITVLYVFSILLTSSQGDKAEDLKGYK----LFVGLGAALASLGICLWITLRHDFL 118 Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 S +V IG L + Y P E+ +LL ++G I++ + Sbjct: 119 PSHFEHGELHVRTIGHALMSSGKYGYILPFEVISLLLLACIVGGILIARKR 169 >gi|139390005|ref|YP_001123604.1| NADH dehydrogenase ND6 [Draba nemorosa] gi|221272322|sp|A4QL74|NU6C_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286807|dbj|BAF50429.1| NADH dehydrogenase ND6 [Draba nemorosa] Length = 176 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 10/148 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIFSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN--DSEYST 88 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138 +G ++ L+ + ++ ++ + +N + IG L Sbjct: 89 DFTLWTVGDGITSLVCTTLLFSLISTILDTSWYRVIWTTRLNQILEQDLISNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFFLPFELISIILLVALIGAISVARQ 176 >gi|68164857|ref|YP_247653.1| NADH dehydrogenase subunit 6 [Cucumis sativus] gi|67511452|emb|CAJ00812.1| NADH dehydrogenase subunit VI [Cucumis sativus] Length = 176 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 10/172 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + L+ I+ S V+ N IYS FSL V+ + ++L A+FVA L++Y Sbjct: 7 IHDFLVVLWGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V +F +M + +G+ ++ + V +V ++ + Sbjct: 67 VGAINVLIIFAVMFM--KGSEYSKDFNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL ++IGAI + + Sbjct: 125 WTTRSNQILEQDLISNSQQIGIYLSTYFFLPFELISIILLAALIGAIAVARQ 176 >gi|139388966|ref|YP_001123692.1| NADH dehydrogenase subunit 6 [Lepidium virginicum] gi|221272329|sp|A4QLG2|NU6C_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286896|dbj|BAF50517.1| NADH dehydrogenase ND6 [Lepidium virginicum] Length = 176 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLFCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139 + L S + S G + +N + IG L Sbjct: 90 FNLWTVGNGITSLVCTTILFSLLSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176 >gi|119368552|ref|YP_913239.1| NADH dehydrogenase ND6 subunit [Gossypium barbadense] gi|221272324|sp|A0ZZ88|NU6C_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|119224914|dbj|BAF41300.1| NADH dehydrogenase ND6 subunit [Gossypium barbadense] Length = 176 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 10/148 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V + ++L FVA L++YVGA+ V LF++M ++ + Sbjct: 31 NPIYSAFSLGLVLVCISLFYILTNYHFVATAKLLIYVGAINVLILFVVMFMNSSEYYKDF 90 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKVL 138 +G+ ++ ++V + ++ ++ + N + IG L Sbjct: 91 N--PWTIGNGLTSLVCTSILVSLISTILDTSWYGIIWTTRSNQIIEQDLIGNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E ILL+++IGAI + L+ Sbjct: 149 ATDFFLPFEFISIILLVALIGAIDVTLQ 176 >gi|58578623|ref|YP_203313.1| NADH dehydrogenase subunit 6 [Rhizopus oryzae] gi|57339010|gb|AAW49480.1| NADH dehydrogenase subunit 6 [Rhizopus oryzae] Length = 214 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 44/213 (20%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ L F +++S LV+T RNP+ SV LI F+N A +LLG F+ + L+VY Sbjct: 1 MNAILLDLLVFGSVLSGILVITSRNPVVSVLFLISVFINVACYLILLGINFIGLAYLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG---FLGSFFIGILAAELIVCASNFMV----- 114 VGA+ + FLF+IMML+I + + + + +F +G L + + + Sbjct: 61 VGAIAILFLFVIMMLNIKLVELQDSSEDYSNPYPLAFVLGTLFVSGLSLTNKNIWGVHSE 120 Query: 115 ------------------------------------FSAEGELSRLVFKGNNVENIGKVL 138 + + + +IG+VL Sbjct: 121 QSLFGSSNGSGIKLDLSGLFDWVNLLSFKSNTLETLTINHSNWDNVFVSMDQINSIGQVL 180 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 YT +A L ++ ILLL+M+G I+L L + + Sbjct: 181 YTSHALFLIVASMILLLAMVGPIILCLNPTKRV 213 >gi|194336916|ref|YP_002018710.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pelodictyon phaeoclathratiforme BU-1] gi|194309393|gb|ACF44093.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pelodictyon phaeoclathratiforme BU-1] Length = 170 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 5/148 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FYLF+ + + S+ VV RN IYS FSL+F F A L++ L A+F+A+ +VVYVG Sbjct: 7 TVIFYLFAAITLFSAAFVVFTRNVIYSAFSLLFTFFGVAALYVFLSADFIAVTQVVVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL-SR 123 ++V LF +M + + V + + + G L IV + ++ G + S Sbjct: 67 GILVLLLFGVMFTNSIMHVGQKSE----VLHIIPGTLLLAAIVGGLLYTFYTTHGWMPSE 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGF 151 + +G+ VE IG ++Y P E+ Sbjct: 123 TMLQGSIVERIGFETMSRYVLPFEMVSI 150 >gi|290489878|gb|ADD31346.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Oxalis latifolia] Length = 176 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 16/151 (10%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N IYS FSL V + ++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 31 NTIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-----SSE 85 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG-----------NNVENIG 135 K L + GI I + + +++ +N + IG Sbjct: 86 YSKDFNLWTVGNGITLLVCISIFVLLITTIPDISWYGIIWTTRSNQIIEQNWIDNSQQIG 145 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 146 IHLLTDFFLPFELISIILLVALIGAIAVARQ 176 >gi|139388149|ref|YP_001123340.1| NADH dehydrogenase ND6 [Barbarea verna] gi|221272310|sp|A4QKG0|NU6C_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286540|dbj|BAF50165.1| NADH dehydrogenase ND6 [Barbarea verna] Length = 176 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139 + L S + S G + +N + IG L Sbjct: 90 LNLWTVGNGITSLVCTTILFSLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAISMARQ 176 >gi|50083957|ref|YP_045467.1| NADH dehydrogenase I chain J [Acinetobacter sp. ADP1] gi|49529933|emb|CAG67645.1| NADH dehydrogenase I chain J [Acinetobacter sp. ADP1] Length = 173 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AIIS+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIISTIRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF- 126 V F+F++MML++ E +K ++ + L + L+ +M+ ++ Sbjct: 65 VLFVFVVMMLNLGRHTVEQERKWLTSETWAVPALMSFLLGLTLVWMLSGEYTTAGHVLGR 124 Query: 127 KGNNVENIGKVLYTQYAYPLEI 148 + + +G+ L+T Y +EI Sbjct: 125 EVIGPKAVGQALFTHYLLLVEI 146 >gi|290489876|gb|ADD31345.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Liquidambar styraciflua] Length = 176 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 8/148 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD------- 78 NPI+S FSL V + ++ + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIFSAFSLGLVLVCISLFYISSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSGYYKD 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 +++ S F+ ++ + + ++ +N + IG L Sbjct: 90 LNLWTVGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTRSNQIIEQDL-ISNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFFLPFELISIILLVALIGAIAVARQ 176 >gi|270308200|ref|YP_003330258.1| NADH:quinone oxidoreductase subunit 6 (chain J) [Dehalococcoides sp. VS] gi|270154092|gb|ACZ61930.1| NADH:quinone oxidoreductase subunit 6 (chain J) [Dehalococcoides sp. VS] Length = 160 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 8/165 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F++ + I S+ LVV V+N +S LI F++ AG+FLLL A+F+A + +++Y+G Sbjct: 2 EIAFWIIAITCIASALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A+ V + IM L +++ K F + +L + +M+ S+ S Sbjct: 62 AISVLIILAIM-LTREVQRGNLTNKLKIPALFVVTVLGGVM-----TYMLISSNWTSSDA 115 Query: 125 VFKGNNVENIGKVLYTQ--YAYPLEISGFILLLSMIGAIVLMLRH 167 + ++L+ + + I+G ILL+++IGAIVL+ Sbjct: 116 PAPSTTTAGLAEMLFGSDGFGLGVLITGVILLVAIIGAIVLVRDK 160 >gi|325104668|ref|YP_004274322.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter saltans DSM 12145] gi|324973516|gb|ADY52500.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pedobacter saltans DSM 12145] Length = 180 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 12/177 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FYL + +AI+S+ VVT +N + SVF +AGL++ A+FVA+ +V+Y Sbjct: 1 MEQILFYLLAGIAILSACYVVTSQNLVRSVFMFFVTLFASAGLYIFALADFVALTQIVIY 60 Query: 63 VGAVIVFFLFIIMMLD------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 VG V+V LF+ M+ +D + + G+ + A LI S Sbjct: 61 VGGVLVMLLFVFMLSSKKSLQGLDGLTKQKLSENRLPGAILSLSVFAILIYTIFQIDFNS 120 Query: 117 AEGELSRLV------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 S + N+ NIG L T + P E+ +L++ +IGA L + Sbjct: 121 LSWIQSAIATDNVKLPSDENISNIGINLMTGFLLPFELICVLLMMVLIGAAHLARKE 177 >gi|322378674|ref|ZP_08053107.1| NADH dehydrogenase subunit J [Helicobacter suis HS1] gi|321148891|gb|EFX43358.1| NADH dehydrogenase subunit J [Helicobacter suis HS1] Length = 181 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 10/181 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FY F+ + + +VV+ N +Y++ +L + V +G F LLGAEF+ ++ ++VY Sbjct: 2 FEVIAFYFFAIFTLSMALIVVSTSNILYAMSALAASMVFISGFFFLLGAEFLGVVQILVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119 VGAVIV + F +M + EV E K + + +G + A L+V + Sbjct: 62 VGAVIVMYAFGMMFFNASEEVIERSHKPWLV--YILGGVFALLLVVILGAPALNNYAHHL 119 Query: 120 -----ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ NV +G ++T+Y E G +LL ++IG I LR +++ Sbjct: 120 SAENLQIVTPNLSTTNVHLMGYFVFTKYRIAFEAGGVMLLSALIGGITTALRKSYLSQKE 179 Query: 175 D 175 + Sbjct: 180 N 180 >gi|320107668|ref|YP_004183258.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Terriglobus saanensis SP1PR4] gi|319926189|gb|ADV83264.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Terriglobus saanensis SP1PR4] Length = 168 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 2/167 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F +F+ + + + ++ R+PI S SL+ ++ A ++ LGAEF+A ++VY Sbjct: 1 MQLVLFLIFAVLCVAGALNLLFQRHPINSALSLVVVMMSLAVIYWTLGAEFLAAAQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF--IGILAAELIVCASNFMVFSAEGE 120 GAV+V F+F++M+L+ E + ++ ILA + Sbjct: 61 AGAVMVLFVFVVMLLNAGEEERTTGSRAAYIAGIPGVAAILALLTYIFMHERAALGYATL 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 L +N+ I +VL+T+ P E++ ++L++++GA+VL + Sbjct: 121 GGSLNHTTSNITEISRVLFTELLLPFEVTSILILVAILGAVVLARKE 167 >gi|301058577|ref|ZP_07199582.1| putative NADH-quinone oxidoreductase subunit J [delta proteobacterium NaphS2] gi|300447309|gb|EFK11069.1| putative NADH-quinone oxidoreductase subunit J [delta proteobacterium NaphS2] Length = 166 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 3/161 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L FY+ +A++++FL +T R I+ + L+ + + AA FL+LGA F A + ++ Y G Sbjct: 2 NLAFYVSGVIAVLATFLAITRREAIHGLVYLVVSLLAAAVAFLVLGAPFAAALEVITYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V LF +M L + K+ +F ++ +F+ G+ S + Sbjct: 62 AMMVMLLFAVMTLSPKARKEDDAKR---PHPWFWLGPLLLSVLLTGDFIYVLFAGKGSPV 118 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + +G+VL+ Y +E++ +LL ++GA L Sbjct: 119 SGSAVSPRQVGQVLFGPYVLGVELASMLLLAGLVGAYHLGR 159 >gi|309322124|ref|YP_003933940.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum] gi|197131408|gb|ACH47222.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum] gi|300069217|gb|ADJ66339.1| NADH-plastoquinone oxidoreductase subunit 6 [Erodium texanum] Length = 176 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 10/144 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 N IYS F+L F+ + ++L + FVA L++YVGA+ + LF +M L+ + Sbjct: 30 TNLIYSAFALGLVFICISLFYILANSHFVAAAQLLIYVGAINILILFAVMFLN--GSESS 87 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 + G +G ++ L + + ++ ++ + +N + IG Sbjct: 88 KDSRFGTVGDGATSLVCTTLFLSLISNILDTSWYRIIWTTRATQIIEKDLISNSQQIGIR 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAI 161 L T + P E+ ILL+++IGAI Sbjct: 148 LSTDFFLPFELISIILLVALIGAI 171 >gi|139389857|ref|YP_001123517.1| NADH dehydrogenase subunit 6 [Crucihimalaya wallichii] gi|221272318|sp|A4QKY7|NU6C_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286719|dbj|BAF50342.1| NADH dehydrogenase ND6 [Crucihimalaya wallichii] Length = 176 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139 + L + S + S G + +N + IG L Sbjct: 90 FNLWTVGNGITSLVCTTILCLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176 >gi|72163085|ref|YP_290742.1| NADH dehydrogenase subunit J [Thermobifida fusca YX] gi|71916817|gb|AAZ56719.1| NADH dehydrogenase I chain J [Thermobifida fusca YX] Length = 286 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 4/183 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ FY+ + ++++ VV R +YS + + A + + A F+ ++ +VVY Sbjct: 17 ETATFYILGSIVVLAALGVVFSRRAVYSALMMAVVMIGLAVFYGINEAPFLMVVQIVVYT 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV++ FLF++M++ + + RG L + L+ S+ + G Sbjct: 77 GAVLMLFLFVLMLVGVSSSDSLVETIRGHRLLTAVIALCFLVPLVSGLSSIVAGEPVGLS 136 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLE 181 + + G ++ + + +Y E +G +L+ +++GA+VL R KR KQ+ Sbjct: 137 AGVAAAGGSIPWLASEIIYRYVIAFEATGALLITAVLGALVLAHAVRTKKKR--TQKQMS 194 Query: 182 SNP 184 + Sbjct: 195 MDR 197 >gi|290489870|gb|ADD31342.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Ficus sp. Moore 315] Length = 176 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 6/146 (4%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYS FSL V+ + L++L + FVA L++YVGA+ V +F +M ++ + Sbjct: 31 NPIYSAFSLGLVLVSISLLYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF 90 Query: 87 RKK------RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT 140 + + G+L + + ++++ +N + IG L T Sbjct: 91 NLWTVGNGFTLLICTSIFGLLITTITDISWYGIIWTTRLNQIIEHDLISNSQQIGIHLST 150 Query: 141 QYAYPLEISGFILLLSMIGAIVLMLR 166 + P E ILL ++IGAI + + Sbjct: 151 DFFLPFEFISIILLAALIGAITVARQ 176 >gi|226944926|ref|YP_002799999.1| NADH dehydrogenase subunit J [Azotobacter vinelandii DJ] gi|226719853|gb|ACO79024.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain J [Azotobacter vinelandii DJ] Length = 166 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FYL + A+ S+ V+T NP++++ LI + + A F LGA F ++ ++VY G Sbjct: 2 EFAFYLSAGFAVASTLRVITHTNPVHALLYLIVSLLAVAMCFFSLGAPFAGVLEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ VAE ++ + G +++ V + + + Sbjct: 62 AIMVLFVFVVMMLNLGPAVAEQE-RQWLKPGIWAGPTLLSVLLLVQLLYVLFGTSDGALV 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + + +G LY Y +E Sbjct: 121 GQQTVDAKAVGTALYGPYLLAVE 143 >gi|326799009|ref|YP_004316828.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobacterium sp. 21] gi|326549773|gb|ADZ78158.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobacterium sp. 21] Length = 165 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 91/165 (55%), Gaps = 2/165 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY +F++I S +V+ +NP++SV L+ F ++LL A+F+A++ +VY+GA+ Sbjct: 3 LFYFVAFLSIFFSLMVIITKNPVHSVLYLVITFFTFTVHYILLNAQFLAVVNFIVYMGAI 62 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V FLF++M+L+++ + + + G+ L+ A + L Sbjct: 63 MVLFLFVLMLLNLNKDTEPMKSVLVKVMGAVAGM--CLLVTVAGSIRAIEVSDPLILKSP 120 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 V N+GKVL+ ++ P EIS +LL +M+GA++L + ++ I Sbjct: 121 DIGLVGNLGKVLFNEFLLPFEISSLLLLTAMVGAVLLAKKEQKSI 165 >gi|7525088|ref|NP_051112.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] gi|2499298|sp|Q95695|NU6C_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|1619279|emb|CAA67670.1| ndhG [Arabidopsis thaliana] gi|5881749|dbj|BAA84440.1| NADH dehydrogenase ND6 [Arabidopsis thaliana] Length = 176 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139 + L + S + S G + +N + IG L Sbjct: 90 FNLWTIGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176 >gi|326910750|gb|AEA11193.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii] gi|327176857|gb|AEA29865.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii] Length = 177 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 87/173 (50%), Gaps = 7/173 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVT--VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT 58 M ++ F + S +A++S LVV NP+ +VF + FV +GL + L +F AMI Sbjct: 1 MNNSTILFGVLSSLALVSGGLVVRSGALNPVPAVFLFLLVFVLCSGLLVWLDLDFFAMIF 60 Query: 59 LVVYVGAVIVFFLFIIMMLDIDIEVAE----PRKKRGFLGSFFIGILAAEL-IVCASNFM 113 LVVY GA++VFFLF++MM E E PR +G F+ L L Sbjct: 61 LVVYAGAMVVFFLFVVMMCTFRREGREHEVAPRHTEFVVGLLFLSHLWLVLERSPRPPTP 120 Query: 114 VFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 GE V +++ +G +LYT SG ILL++++GAIVL + Sbjct: 121 SAYPIGEHCGHVTSATHLDTLGTLLYTHVPLLFIGSGLILLVALLGAIVLTVH 173 >gi|307822809|ref|ZP_07653040.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacter tundripaludum SV96] gi|307736413|gb|EFO07259.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacter tundripaludum SV96] Length = 172 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 3/161 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY+ S +A+ ++ +++T N ++ + LI + + LF LLGA F A++ +++Y Sbjct: 1 MALTLFYITSAVAVFATVMMITRLNAVHGLLYLILSLLAVGVLFFLLGAYFAAVLEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IMML+ + E + G + L A ++ +V S + Sbjct: 61 AGAIMVLFVFVIMMLNQGQKTLEQERAWLQPGIWIGPSLLALILFVEMLVIVVSGGSAET 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + +G LY Y +E++ +LL ++GA L Sbjct: 121 GYAVSA---KQVGVALYGPYLLAVELASMLLLAGLVGAYHL 158 >gi|290489886|gb|ADD31350.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Trochodendron aralioides] Length = 176 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYND 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 +G ++ + V + ++ + +N + IG Sbjct: 90 FHL--WTVGDGVTSLVCTSIFVSLITTIPDTSWYGIIWTARSNQIIEQDLISNSQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 148 LSTDFFLPFELISIILLVALIGAIAMARQ 176 >gi|323698258|ref|ZP_08110170.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio sp. ND132] gi|323458190|gb|EGB14055.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio desulfuricans ND132] Length = 174 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 3/167 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+ + F +++ + + + L V+ + + ++ LI + AG++LLL F+A + L++ Sbjct: 3 VLAKIAFGVYTLVILGGAVLAVSSSSLVRALIGLITTLIGVAGMYLLLATPFMAFMQLLI 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V F +M+ E + + + G+ A ++V + Sbjct: 63 YVGAVSVLIFFAVMLT--RAEQGGDEADKAPMKRYVFGLAATMAPAAILGWLVLTRPAPS 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + ++ +G+ L Y P E+ IL+++M GA++L+ R Sbjct: 121 VAVPVEVP-IKQLGEGLLGSYFLPFELISVILMVAMSGAVLLVWEKR 166 >gi|86149418|ref|ZP_01067649.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840200|gb|EAQ57458.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni CF93-6] Length = 172 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 2/171 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++L F FS + + + V +N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M D E E K K+ F + + ++ + S + L Sbjct: 62 SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSTILLLAMLIGFKYQNISTDLPL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + N + + ++++Y E +LL++++ AIVL + K Sbjct: 122 NDPTLFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTHKELTKEK 171 >gi|283795060|ref|YP_003359476.1| NADH dehydrogenase subunit 6 [Synedra acus] gi|261279716|gb|ACX62024.1| NADH dehydrogenase subunit 6 [Synedra acus] Length = 198 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 15/178 (8%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF+LFSF+ +SS V+++RN I SV SLI F+ ++ L L+L EF A + L+VYVGA+ Sbjct: 6 FFHLFSFLLTLSSISVISLRNSIQSVVSLIVCFITSSILLLILNCEFFAFLFLIVYVGAI 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSAEGELSR 123 V FLF++MML++ + FLG +L I +S + S Sbjct: 66 AVLFLFVLMMLELKHLDNKANLFHIFLGLSVPVIFFLLTLPFIDSCFALNPYSEVFQQSN 125 Query: 124 LVF------------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +F ++E +G++LYT+YA ++G IL L+++ VL + ++ Sbjct: 126 RIFIENCFDEFYIEDDTTDIEVLGQLLYTRYALQFLLTGLILTLAVVCVGVLTIDRKK 183 >gi|139387308|ref|YP_001123428.1| NADH dehydrogenase subunit 6 [Capsella bursa-pastoris] gi|221272313|sp|A4QKP8|NU6C_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286629|dbj|BAF50253.1| NADH dehydrogenase ND6 [Capsella bursa-pastoris] Length = 176 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139 + L + S + S G + +N + IG L Sbjct: 90 FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176 >gi|290489868|gb|ADD31341.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Euonymus americanus] Length = 176 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL + A ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLICIALFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMN--GSEYH 87 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 G ++ + + + ++ + N + IG Sbjct: 88 NAFYLWNAGGGVTSLVCTSIFLLLITTIPDTSWYGIIWTTRSNQIIEKDLITNSQQIGIR 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + Sbjct: 148 LSTDFFLPFELISIILLVALIGAIAAARQ 176 >gi|183220693|ref|YP_001838689.1| NADH-quinone oxidoreductase subunit J [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910794|ref|YP_001962349.1| NADH dehydrogenase subunit J [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775470|gb|ABZ93771.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779115|gb|ABZ97413.1| NADH-quinone oxidoreductase, chain J [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 199 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 20/187 (10%) Query: 1 MVMQS----LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAM 56 M +++ L F F + ++++ VV +NP+ S SL+F F AG++ ++GA F+A Sbjct: 1 MNLETSPSLLLFVFFGTVTVVTALSVVFQKNPVVSAVSLVFTFFALAGIYGIMGALFIAT 60 Query: 57 ITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-- 114 + ++VY GA++V +F++M+L E +K + + S Sbjct: 61 MQVLVYAGAIMVLVVFVLMLLSQRAETLSRYRKHPIRLVLLSVFVLGFFFLLYSALTTGV 120 Query: 115 --------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 ++ + + V NV +G Y Y P E+ +LL++++GA Sbjct: 121 PHSEQMGKGYENAEYNFPIQGTSTVNAKGNVATVGASTYLDYLLPFEMISILLLVAVLGA 180 Query: 161 IVLMLRH 167 ++L + Sbjct: 181 VILAKKK 187 >gi|39998522|ref|NP_954473.1| NADH dehydrogenase I subunit J [Geobacter sulfurreducens PCA] gi|39985469|gb|AAR36823.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens PCA] gi|298507466|gb|ADI86189.1| NADH dehydrogenase I, J subunit [Geobacter sulfurreducens KN400] Length = 163 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 4/167 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+ + + +I++ L +T ++ ++++ L+ +F A +F LGA VA+ +++Y Sbjct: 1 MEQALFYILAAVTVIATVLAITEKHAVHAIVYLVTSFFALAVIFFTLGAPVVAVFEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IMMLD+ P + R + LA + AS + + + + Sbjct: 61 AGAIMVLFLFVIMMLDL----GHPERARRPGIRDWWPALALGAVTLASALTLLISRAQAA 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + V+ L+ +Y +E+ LL +++GA+ L R R Sbjct: 117 SAAGRAIGVKEFALTLFGKYGVAVEVISMQLLFALVGALYLAKRRER 163 >gi|139389472|ref|YP_001123168.1| NADH dehydrogenase subunit 6 [Olimarabidopsis pumila] gi|221272339|sp|A4QJY5|NU6C_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286366|dbj|BAF49993.1| NADH dehydrogenase ND6 [Olimarabidopsis pumila] Length = 176 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139 + L + S + S G + +N + IG L Sbjct: 90 FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176 >gi|121613130|ref|YP_001001210.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni 81-176] gi|167006103|ref|ZP_02271861.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni 81-176] gi|218563159|ref|YP_002344939.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|87249905|gb|EAQ72864.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|112360866|emb|CAL35667.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927684|gb|EFV07015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 172 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 2/171 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++L F FS + + + V +N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M D E E K K+ F + + ++ + S + L Sbjct: 62 SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSTILLLAMLIGFKYQNISTDLPL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + N + + ++++Y E +LL++++ AIVL + K Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTHKELTKEK 171 >gi|57238583|ref|YP_179714.1| NADH dehydrogenase subunit J [Campylobacter jejuni RM1221] gi|57167387|gb|AAW36166.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni RM1221] gi|315059020|gb|ADT73349.1| NADH-ubiquinone oxidoreductase chain J [Campylobacter jejuni subsp. jejuni S3] Length = 172 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 2/171 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++L F FS + + + V +N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M D E E K K+ F + + ++ + S + L Sbjct: 62 SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLTMLIGFKYQNISTDLPL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + N + + ++++Y E +LL++++ AIVL + K Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTHKELTKEK 171 >gi|32480898|ref|NP_862808.1| NADH dehydrogenase subunit 6 [Calycanthus floridus var. glaucus] gi|75233676|sp|Q7YJT1|NU6C_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|32399434|emb|CAD28775.1| NADH dehydrogenase ND6 subunit [Calycanthus floridus var. glaucus] Length = 176 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + + FVA L++YVGAV V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMNGSEYSND 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK--------GNNVENIGKV 137 +G ++ ++ + ++ + +NV+ IG Sbjct: 90 FHL--WTVGDGVTSLVCTSILFSLITTIWNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIR 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL ++IGAI + + Sbjct: 148 LATDFYLPFELISIILLAALIGAIAMARQ 176 >gi|73748697|ref|YP_307936.1| proton-translocating NADH-quinone oxidoreductase, J subunit [Dehalococcoides sp. CBDB1] gi|147669456|ref|YP_001214274.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Dehalococcoides sp. BAV1] gi|289432723|ref|YP_003462596.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dehalococcoides sp. GT] gi|73660413|emb|CAI83020.1| proton-translocating NADH-quinone oxidoreductase, J subunit [Dehalococcoides sp. CBDB1] gi|146270404|gb|ABQ17396.1| NADH dehydrogenase subunit J [Dehalococcoides sp. BAV1] gi|288946443|gb|ADC74140.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dehalococcoides sp. GT] Length = 160 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 8/165 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F++ + I+S+ LVV V+N +S LI F++ AG+FLLL A+F+A + +++Y+G Sbjct: 2 EIAFWIIAITCIVSALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A+ V + IM L +++ K F + L + +M+ S+ S Sbjct: 62 AISVLIILAIM-LTREVQRGNLTNKLKIPALFVVTALGGIM-----TYMLISSNWTSSDA 115 Query: 125 VFKGNNVENIGKVLYTQ--YAYPLEISGFILLLSMIGAIVLMLRH 167 + +L+ + + ++G ILL+++IGAIVL+ Sbjct: 116 PPPSTTTAGLADMLFGADGFGLGVLLTGVILLVAIIGAIVLVRDK 160 >gi|86152311|ref|ZP_01070522.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|88596684|ref|ZP_01099921.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|315124981|ref|YP_004066985.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840800|gb|EAQ58051.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|88191525|gb|EAQ95497.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|284926765|gb|ADC29117.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni IA3902] gi|315018703|gb|ADT66796.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315930445|gb|EFV09509.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 305] Length = 172 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 2/171 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++L F FS + + + V +N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M D E E K K+ F + + ++ + S + L Sbjct: 62 SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISTDLPL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + N + + ++++Y E +LL++++ AIVL + K Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTHKELTKEK 171 >gi|114330023|ref|YP_740704.1| NADH-plastoquinone oxidoreductase subunit 6 [Nandina domestica] gi|122165914|sp|Q09FQ7|NU6C_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|114054525|gb|ABI49918.1| NADH-plastoquinone oxidoreductase subunit 6 [Nandina domestica] Length = 176 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFHIPANSHFVAAAQLLIYVGAINVLIVFAVMFMNGSEYYND 89 Query: 86 PRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV----ENIGKVLY 139 + S + LI S+ + ++ + +G L Sbjct: 90 FHLWTVGDGVTSLVCTSIFVSLITTISDTSWYGIIWTTRSNQIIEQDLINKGQQLGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAIAMARQ 176 >gi|297790824|ref|XP_002863297.1| NADH dehydrogenase ND6 [Arabidopsis lyrata subsp. lyrata] gi|297309131|gb|EFH39556.1| NADH dehydrogenase ND6 [Arabidopsis lyrata subsp. lyrata] Length = 176 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139 + L + S + S G + +N + IG L Sbjct: 90 FNLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176 >gi|326799614|ref|YP_004317433.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobacterium sp. 21] gi|326550378|gb|ADZ78763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sphingobacterium sp. 21] Length = 183 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 12/181 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + L FY+ +F A+ S+ L+V+++N + S+F AGL++ A+FVA+ ++ Sbjct: 1 MNINLLLFYVLAFTAVGSAILIVSMKNLVRSLFLFFVTLFAVAGLYVFALADFVAVTQVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 VYVG V+V LF M+ + + ++ K + S+ G+++ L + A Sbjct: 61 VYVGGVLVLMLFAFMLSNKVLLNDLQSGFKGVFSIPSWQAGMVSLALFTVLLTVVWQVAT 120 Query: 119 GELSRLV----------FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + N + ++G L T++ P E+ L+++++GA L + + Sbjct: 121 NQPQWITDAKEKQLLIQHHDNTIHHLGINLMTRFILPFEVVSIFLMMALMGAAHLARKEK 180 Query: 169 R 169 R Sbjct: 181 R 181 >gi|153951541|ref|YP_001398852.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. doylei 269.97] gi|152938987|gb|ABS43728.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 172 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 2/171 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++L F FS + + + V +N +YS+ +L+ V +G + LL AEF+ +I ++VY Sbjct: 2 IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALVGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M D E E K K+ F + + ++ + S + L Sbjct: 62 SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISTDLPL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + N + + ++++Y E +LL++++ AI L + K Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAITLTHKELTKEK 171 >gi|157415786|ref|YP_001483042.1| NADH dehydrogenase subunit J [Campylobacter jejuni subsp. jejuni 81116] gi|157386750|gb|ABV53065.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni 81116] gi|307748425|gb|ADN91695.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Campylobacter jejuni subsp. jejuni M1] gi|315931250|gb|EFV10220.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Campylobacter jejuni subsp. jejuni 327] Length = 172 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 2/171 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++L F FS + + + V +N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F IM D E E K K+ F + + ++ + S + L Sbjct: 62 SGAVLGLYSFAIMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISTDLPL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + N + + ++++Y E +LL++++ AIVL + K Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTRKELTKEK 171 >gi|313903489|ref|ZP_07836880.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermaerobacter subterraneus DSM 13965] gi|313466310|gb|EFR61833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermaerobacter subterraneus DSM 13965] Length = 246 Score = 100 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F + + + ++ ++ VVT +S L FV AGLF+LL A A++ ++ Sbjct: 1 MSGTAVIFAVLAAVVLLGAWRVVTSEQIAHSALFLGLTFVGMAGLFILLKAPTFALLHVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCASNFMV 114 VYVGA++ +F IM+ D + R +R FL ++ + V + + Sbjct: 61 VYVGAILTVVVFAIMLSDPEELRGAGDLALGERLRRRFLSPYYGWLPVVVAGVLVAVILA 120 Query: 115 FSAEGELSRLVFK---GNNVENIGKVLYTQYAYPLEISG 150 A +L R+ +++ IG ++T+YA P E++ Sbjct: 121 GLAAAQLPRVPLGEPVADDLRAIGGEMFTRYAIPFEVAS 159 >gi|212640512|ref|YP_002317032.1| NADH dehydrogenase subunit J [Anoxybacillus flavithermus WK1] gi|212561992|gb|ACJ35047.1| NADH dehydrogenase subunit J [Anoxybacillus flavithermus WK1] Length = 169 Score = 100 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 87/170 (51%), Gaps = 4/170 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + F++ S +A+ ++ + ++ V +L+F FV+ AG+++LL AEFVA + ++ Sbjct: 1 MSGQYIAFFVLSLIALGGGIFMLNLNKVVHMVVALVFTFVSIAGIYVLLSAEFVAAVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA+ + LF IM+ + + + ++ + F +E Sbjct: 61 IYSGAITIIMLFGIMLTRHQDDGQSTGSPLRKALALLGTVAFGAVMYIGIRTLDFGSEA- 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + N E IG +Y++Y P E++ +LL+++IGA++L + ++ Sbjct: 120 ---VGLHDKNTEQIGIAMYSKYVIPFELASVLLLVALIGAVILAKKDDKE 166 >gi|262369341|ref|ZP_06062669.1| NADH dehydrogenase subunit I J [Acinetobacter johnsonii SH046] gi|262315409|gb|EEY96448.1| NADH dehydrogenase subunit I J [Acinetobacter johnsonii SH046] Length = 173 Score = 100 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTIRVVTNANPVHALLSLIVSLLAVAGMFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV-F 126 V F+F++MML++ E +K ++ L + L+ +M+ S ++ Sbjct: 65 VLFVFVVMMLNLGQHTVEQERKWLTSSAWAYPALMSFLMGLVLVWMLGSDYTVAGPVMGT 124 Query: 127 KGNNVENIGKVLYTQYAYPLE 147 + + +G+ L+T Y +E Sbjct: 125 EVVGPKAVGQALFTHYLLLVE 145 >gi|222824429|ref|YP_002576003.1| NADH-quinone oxidoreductase, J subunit [Campylobacter lari RM2100] gi|222539650|gb|ACM64751.1| NADH-quinone oxidoreductase, J subunit [Campylobacter lari RM2100] Length = 168 Score = 100 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 4/164 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ F L S + + + V + +Y++ SL A V +G + LL AEF+ I ++VY Sbjct: 2 FETIAFCLLSVLVLGFFLISVLSTSVLYAISSLAAAMVFLSGFYFLLNAEFIGAIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++ + F +M D I+V E K + FI + I+ S M ++ + Sbjct: 62 SGAILGLYSFAMMFFDASIKVKENLKGKR----VFIFAVIFSAILLISIIMGYNFGLNET 117 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 V+ ++ + IG L+T+Y E +LL+++I AI L + Sbjct: 118 GEVYGLDSTQQIGFTLFTKYMLAFEFMAILLLIALICAIALTQK 161 >gi|317051062|ref|YP_004112178.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Desulfurispirillum indicum S5] gi|316946146|gb|ADU65622.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfurispirillum indicum S5] Length = 168 Score = 100 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 3/167 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ +L F F+ ++I + ++ R+P+ S I ++ AGL+ LL A+ + ++V Sbjct: 3 IVAALLFLAFATLSIAGAAGLILFRHPLNCAVSFIITLISLAGLYALLSAKVLFAFQIIV 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA++ LFIIM +++ E R FL + G + I +F+ Sbjct: 63 YAGAIMSLILFIIMFINVRDEDLPDESNRIFLMA--GGCVFLVPIAWILLKAIFALPYVS 120 Query: 122 SRLVFKG-NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +V G + G +L+T + P E+ +LL++++G +VL R Sbjct: 121 TAIVGDGFGGIHQFGMMLFTDWILPFEVVSALLLVALVGGVVLAKRR 167 >gi|313184044|ref|YP_004021201.1| NADH-plastoquinone oxidoreductase subunit 6 [Castanea mollissima] gi|290489882|gb|ADD31348.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Quercus nigra] gi|309321571|gb|ADO65111.1| NADH-plastoquinone oxidoreductase subunit 6 [Castanea mollissima] Length = 176 Score = 100 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I+ VV + N IYS FSL V + ++L + VA L++Y Sbjct: 7 IHDFLLVFLGSGLILGGIGVVLLTNTIYSAFSLGLVLVCISLFYILSNSHLVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK------RGFLGSFFIGILAAELIVCASNFMVFS 116 VGA+ V +F +M ++ + + + +L A + + ++++ Sbjct: 67 VGAINVLIIFAVMFMNGSEYYKDLNLWTVGDGVTLLICTILFCLLMATISDTSWYGIIWT 126 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N + IG L T + P E+ ILL ++IGAI + + Sbjct: 127 TRSNQIIEQDLISNSQQIGIHLSTDFFLPFELISIILLAALIGAIAVARQ 176 >gi|290489852|gb|ADD31333.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Lonicera japonica] Length = 176 Score = 100 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 8/152 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML---- 77 VV + NPIYS FSL V + ++L + FVA L++YVGA+ V +F +M + Sbjct: 26 VVLLPNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMKGSE 85 Query: 78 ---DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 D + S F+ ++ + + ++ +N + I Sbjct: 86 YYKDFHLLAVGDGLTAMVCTSLFVSLITTIPDTSWYGILWTTKSSQIIEQDL-ISNSQQI 144 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 G L T + P E+ ILL+S+IGAI + + Sbjct: 145 GIHLSTDFFLPFELISIILLVSLIGAIAVARQ 176 >gi|148925718|ref|ZP_01809406.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni CG8486] gi|205355585|ref|ZP_03222355.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni CG8421] gi|145845728|gb|EDK22819.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni CG8486] gi|205346362|gb|EDZ32995.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni CG8421] Length = 172 Score = 100 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 2/171 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++L F FS + + + V +N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IENLAFLFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M D E E K K+ F + + ++ + S + L Sbjct: 62 SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLTMLIGFKYQNISTDLPL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + N + + ++++Y E +LL++++ AI L + K Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAITLTHKELTKEK 171 >gi|27464550|gb|AAO16126.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-A] Length = 147 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ + + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKADSQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYINNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLML----------RHRRDIKRQDISKQLESN 183 +L RQD+ Q+ Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 145 >gi|229315898|ref|YP_002860124.1| NADH dehydrogenase subunit 6.1 [Micromonas sp. RCC299] gi|229315908|ref|YP_002860134.1| NADH dehydrogenase subunit 6.2 [Micromonas sp. RCC299] gi|226431183|gb|ACO55588.1| NADH dehydrogenase subunit 6.1 [Micromonas sp. RCC299] gi|226431193|gb|ACO55598.1| NADH dehydrogenase subunit 6.2 [Micromonas sp. RCC299] Length = 268 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/108 (37%), Positives = 61/108 (56%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+F+ A+++ +V+ +NP+YSV LI F N +GL LL+ +F AM+ LVVY Sbjct: 1 MNLVLFYMFASFALLAGIMVIRAKNPVYSVLFLILVFCNVSGLLLLINLDFFAMVFLVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 VGA+ V FLF++MML++ + R G+L I Sbjct: 61 VGAIAVLFLFVVMMLNVKLAEINDSILRYLPVGGVFGLLFFGEIFLLL 108 >gi|295697739|ref|YP_003590977.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus tusciae DSM 2912] gi|295413341|gb|ADG07833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus tusciae DSM 2912] Length = 179 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 1/142 (0%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84 R +Y S+ F+ AG+++LLGA+F+A +++Y GA+ + LF IM+ D Sbjct: 37 FRKVMYMALSIGLVFLGMAGMYVLLGADFLAFAQILIYAGAITILMLFAIMLTRHDEVEE 96 Query: 85 EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAY 144 E R + + ++ A + A N+V + ++L+T Y Sbjct: 97 EERAGLRQWLAGLGAVALGAAMLWAIRTTTWPAAPAQPPWPA-QNSVTALAEMLFTNYVV 155 Query: 145 PLEISGFILLLSMIGAIVLMLR 166 P E+ +L ++++GA++L + Sbjct: 156 PFELVSVLLTVALVGAVILARK 177 >gi|139390208|ref|YP_001123780.1| NADH dehydrogenase subunit 6 [Lobularia maritima] gi|221272330|sp|A4QLQ0|NU6C_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|134286985|dbj|BAF50605.1| NADH dehydrogenase ND6 [Lobularia maritima] Length = 176 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139 + L S + S G + +N + IG L Sbjct: 90 FNLWTVGDGITSLVCTTILFSLISTILDTSWYGVIWTTRLNQLLEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL++++GAI + + Sbjct: 150 TDFFLPFELISIILLVALVGAISVARQ 176 >gi|27464568|gb|AAO16138.1| NADH dehydrogenase subunit 6 [Alcyonium rudyi] gi|27464571|gb|AAO16140.1| NADH dehydrogenase subunit 6 [Alcyonium sp. CSM-B] gi|27464583|gb|AAO16148.1| NADH dehydrogenase subunit 6 [Sarcophyton trocheliophorum] Length = 147 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLML----------RHRRDIKRQDISKQLESN 183 +L RQD+ Q+ Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 145 >gi|189500533|ref|YP_001960003.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium phaeobacteroides BS1] gi|189495974|gb|ACE04522.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Chlorobium phaeobacteroides BS1] Length = 174 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 3/150 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ FYLF+ + + S+ VV RN IYS FSL+F F A L++ L A+F+A+ ++V Sbjct: 4 TTYTVIFYLFAAVTVFSAAFVVFSRNIIYSAFSLLFTFFGVAALYVFLSADFIAVTQIMV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVG ++V LF +M + ++ K L +L + V AE Sbjct: 64 YVGGILVLLLFGVMFTN---KIMMTDLKTDVLNILPGIVLLLSITGGLIYTFVARAEWFT 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGF 151 S + +G+ VE IG ++Y P E+ Sbjct: 121 STVQLQGSVVEKIGFETMSRYVLPFEMVSI 150 >gi|57234301|ref|YP_181654.1| proton-translocating NADH-quinone oxidoreductase, J subunit [Dehalococcoides ethenogenes 195] gi|57224749|gb|AAW39806.1| proton-translocating NADH-quinone oxidoreductase, J subunit [Dehalococcoides ethenogenes 195] Length = 160 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 8/165 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F++ + I S+ LVV V+N +S LI F++ AG+FLLL A+F+A + +++Y+G Sbjct: 2 EIAFWIIAITCIASALLVVGVKNIFHSSLWLILCFLSVAGVFLLLSADFLAAVQILIYIG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A+ V + IM L +++ K + L + +M+ S+ S Sbjct: 62 AISVLIILAIM-LTREVQRGNLTNKLKIPALAVVTALGGIM-----TYMLISSNWTSSDA 115 Query: 125 VFKGNNVENIGKVLYTQ--YAYPLEISGFILLLSMIGAIVLMLRH 167 + ++L+ + + I+G ILL+++IGAIVL+ Sbjct: 116 PAPSTTTAGLAEMLFGSDGFGLGVLITGVILLVAIIGAIVLVRDK 160 >gi|27464547|gb|AAO16124.1| NADH dehydrogenase subunit 6 [Alcyonium digitatum] Length = 147 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYINNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLML----------RHRRDIKRQDISKQLESN 183 +L RQD+ Q+ Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 145 >gi|86152855|ref|ZP_01071060.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843740|gb|EAQ60950.1| nadh-quinone oxidoreductase, j subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 172 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 2/171 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++L F FS + + + V +N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M D E E K K+ F + + ++ + S + L Sbjct: 62 SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISTDLPL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + N + + ++++Y E +LL++++ AI L + K Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAITLTHKELTKEK 171 >gi|283953817|ref|ZP_06371348.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni 414] gi|283794858|gb|EFC33596.1| NADH dehydrogenase I chain J [Campylobacter jejuni subsp. jejuni 414] Length = 172 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 2/171 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++L F FS + + + V +N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M D E E K K+ F G + + + + S + L Sbjct: 62 SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFGLVILSAVLLLAMFIGFKYQSVSTDLAL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + L N + + ++++Y E +LL++++ AI L + K Sbjct: 122 NDLALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAITLTHKELTKEK 171 >gi|282891841|ref|ZP_06300321.1| hypothetical protein pah_c198o032 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498274|gb|EFB40613.1| hypothetical protein pah_c198o032 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 168 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 5/160 (3%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++F + I+SS V++ R PIY+ S + + AGL+ L A+F+A++ ++VY GA++V Sbjct: 10 WVFGTILILSSLGVISSRKPIYASLSFLMTLLALAGLYQQLSAQFIAVMQVLVYAGAILV 69 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFI--GILAAELIVCASNFMVFSAEGELSRLVF 126 F+F+I++ E K + F G+ ++ + F S Sbjct: 70 IFMFVIVLFQDAHEKIALFKAKSSPPLLFAAGGLFLFTMLFLSERFYNLKTSNGPSE--- 126 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + VE +GK LY + +P E + L+++IGA+ + + Sbjct: 127 EFGTVETLGKALYADFFFPFEAVTLLFLIAVIGAVFIARK 166 >gi|332885912|gb|EGK06156.1| hypothetical protein HMPREF9456_00030 [Dysgonomonas mossii DSM 22836] Length = 167 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 7/168 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + FY+ + + + S+ + VT + I S L+F + AGL+LLL F+ + + VY Sbjct: 3 EQIIFYILATIIVFSTIMAVTTQKIIRSATFLLFVLLGTAGLYLLLDYHFLMAVQIAVYG 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 G V+V F+F I++ + K F + A + + + ++ + Sbjct: 63 GGVMVLFIFAILLTHEPGVDVKFEKPGRI---FISALAALAGLAICGHIIFYNVNKFYTY 119 Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + + N+++IG + QY P E +LL +IG I++ + Sbjct: 120 ITQQELNMQDIGMGMMGTDKYQYLLPFEAISILLLACIIGGIMIARKR 167 >gi|322417690|ref|YP_004196913.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M18] gi|320124077|gb|ADW11637.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. M18] Length = 161 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 83/165 (50%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ FY+ + + +I + +T R + ++ L+ +F A +F LLGA +A +++Y Sbjct: 1 MEATLFYILAAVTLIGTLCAITARQAVRAIVYLVTSFFALALIFYLLGAPLIAAFEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IMML++ P+ + L ++ +L +V + +V + Sbjct: 61 AGAIMVLFLFVIMMLELGSPEKLPKPR---LSDWWPALLLVGAVVGSVVVLVADGQPAGL 117 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + + L+ QY +E+ LL +++GA+ L R Sbjct: 118 PGFVEIS-ARQFAQTLFQQYGVAVEVISMQLLFALVGALYLGRRR 161 >gi|197131412|gb|ACH47224.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium macrorrhizum] Length = 176 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 N IYS FSL F+ + ++L + FVA L++YVGA+ + LF +M ++ + Sbjct: 30 TNLIYSAFSLGLVFICISFFYILANSHFVAAAQLLIYVGAINILILFAVMFINGSEYSKD 89 Query: 86 PRKKR--GFLGSFFIGILAAELI--VCASNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139 + + S L LI + +++ +++V K +N + IG L Sbjct: 90 FNLRTVGDGVTSLVCTTLFLSLISNILDTSWYGIIWTTRATQIVEKDLISNSQQIGIRLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176 >gi|229577807|ref|YP_002836143.1| NADH-plastoquinone oxidoreductase subunit 6 [Megaleranthis saniculifolia] gi|226933935|gb|ACO92068.1| NADH-plastoquinone oxidoreductase subunit 6 [Megaleranthis saniculifolia] Length = 177 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + + + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIFSAFSLGLVLVCTSLFHIPSNSHFVAAAQLLIYVGAINVLIVFAVMFMNGSEYYND 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 +G ++ + V + ++ + NN + IG Sbjct: 90 FHL--WTVGDGVTSLVCTSIFVSLITTIPDTSWYGIIWTTRSNQILEQDLINNGQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 148 LSTDFFLPFELISIILLVALIGAIAMARQ 176 >gi|238898692|ref|YP_002924373.1| NADH dehydrogenase I chain J [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466451|gb|ACQ68225.1| NADH dehydrogenase I chain J [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 188 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 88/169 (52%), Gaps = 2/169 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + ++++++ V+ N I+S+ LI + + + +F LGA + ++VY G Sbjct: 2 EFSFYTAALVSVLATVRVIFHTNAIHSLLYLIISLLAISVVFFSLGAYLAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + E +++ G F++G ++ + F S + Sbjct: 62 AIMVLFVFVVMMLNL-GQSEEKQERVGLKPVFWVGPSLLCSLLLLALLKGFHGLSGES-M 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + ++IG L++ Y +E++ +LL ++ A L +++ ++ Sbjct: 120 IGTWVSAKSIGVHLFSAYILAVELASMLLLAGLVVAFHLGKENKKRLEE 168 >gi|332702764|ref|ZP_08422852.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio africanus str. Walvis Bay] gi|332552913|gb|EGJ49957.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio africanus str. Walvis Bay] Length = 168 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 7/168 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + F + + S N + ++ LI AG+++LL A FVA++ ++VY Sbjct: 4 LAKAAFVFYVLVIAGGSLAAALSHNMVRALLGLILTMFGVAGMYMLLNAPFVALMQVLVY 63 Query: 63 VGAVIVFFLFIIMMLDIDI--EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VGAV V F IM+ E ++P R +L + +L + V+ Sbjct: 64 VGAVAVLVFFAIMLTRTPTGGEESQPNPSRKYLLALLTAMLPGAALG-----WVWLKHPV 118 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 LS + +E +G+ L Y E+ +L ++M GA++L R R Sbjct: 119 LSDVTPVQAPMEALGQGLMEPYILAFELISVVLFVAMSGAVILAFRKR 166 >gi|290489866|gb|ADD31340.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Cornus florida] Length = 176 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N I+S FSL V + ++L + FVA L++YVGA+ + +F +M ++ + Sbjct: 31 NTIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILIIFAVMFMNGSEYHKDF 90 Query: 87 RKK-------RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 S F+ ++ L + + ++ NN + IG L Sbjct: 91 YLWTVGDGVTSMVCTSIFVSLITTILDTSWYGIIWTTRSNQILEQDL-INNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176 >gi|18640458|ref|NP_570147.1| NADH-ubiquinone oxidoreductase chain 6 [Hypocrea jecorina] gi|18496639|gb|AAL74172.1|AF447590_9 NADH-ubiquinone oxidoreductase chain 6 [Hypocrea jecorina] Length = 256 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 41/202 (20%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S +A++ V+ +NPI S+ SLI F + + +L G F+ L+VY+GAV + Sbjct: 28 ILSVIALLFGIAVIVNKNPIASLLSLIGLFASISVYLILSGLTFIGFSYLIVYIGAVSIL 87 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--------------- 114 FLFI+M+++I + + FI IL + + + Sbjct: 88 FLFILMLINIRTSELQSNNINSIPLALFITILLNYALFQLLPYSIAIINSYNNKLSNIIY 147 Query: 115 --------------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 F + + +++ IG +LYT Y L I Sbjct: 148 YLPTSKYNDIITHISKNLDINTANVMFVTSNSWDGNMAETSHISTIGNILYTSYNMWLFI 207 Query: 149 SGFILLLSMIGAIVLMLRHRRD 170 + FILLL+M+GAIV+ ++ R+ Sbjct: 208 ASFILLLAMVGAIVITIKQERN 229 >gi|290489854|gb|ADD31334.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Meliosma aff. cuneifolia Moore 333] Length = 176 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 8/148 (5%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML-------D 78 NPI+S FSL V + + + FVA L++YVGA+ V LF +M + D Sbjct: 30 TNPIFSAFSLGLVLVCISLFHIPSNSHFVAAAQLLIYVGAINVLILFAVMFMSGSEYYND 89 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 + S F+ ++ + + ++ NN + IG L Sbjct: 90 FQLWTVGDGVTSLVCTSIFVSLITTIPDTSWYGIIWTTRSNQIIEQDL-INNSQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 149 STDFFLPFELISIILLVALIGAISMARQ 176 >gi|83589832|ref|YP_429841.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Moorella thermoacetica ATCC 39073] gi|83572746|gb|ABC19298.1| NADH dehydrogenase subunit J [Moorella thermoacetica ATCC 39073] Length = 168 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 4/170 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + + +L F++ + + I ++ VV ++N ++S L+ F AGL++LL AEF+A + L+ Sbjct: 2 LDISALLFWVLAAITIAAALAVVLLKNIVHSALYLVLTFAGVAGLYILLQAEFLAAVQLL 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GAV + +F +M+ A +L + + + +IV + M ++ Sbjct: 62 VYAGAVAILIVFAVMLTRRGDIKASNLFNINYLAAGVVSLALFVVIVLGTGRMTWTTAPA 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + ++A P E++ +LL++M+GAI+L + + Sbjct: 122 QAPANNVAAIA----NAFLGRFAIPFEVAAVLLLVAMVGAILLARGGKPE 167 >gi|283956942|ref|ZP_06374414.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283791443|gb|EFC30240.1| NADH-quinone oxidoreductase, J subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 172 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 2/166 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++L F FS + + + V +N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK-KRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 GAV+ + F +M D E E K K+ F + + ++ + S + L Sbjct: 62 SGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISTDLPL 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + N + + ++++Y E +LL++++ AIVL + Sbjct: 122 NDPALFDFN-KQLALAIFSKYLLAFEFIAILLLIALVCAIVLTHKE 166 >gi|27464574|gb|AAO16142.1| NADH dehydrogenase subunit 6 [Klyxum simplex] Length = 147 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ ++ + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKIDSQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I S+ + S + + ++ N+ IG LYT Y + I+ +LL +MIGAI Sbjct: 54 GLSVIFLFSSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLAAMIGAI 113 Query: 162 VLML----------RHRRDIKRQDISKQLESN 183 +L RQD+ Q+ Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 145 >gi|27464586|gb|AAO16150.1| NADH dehydrogenase subunit 6 [Lobophytum pauciflorum] Length = 147 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLML----------RHRRDIKRQDISKQLESN 183 +L RQD+ Q+ Sbjct: 114 LLAKQPNSPFLYNFHGESLRSRQDLFLQISRE 145 >gi|295137003|ref|YP_003587550.1| NADH dehydrogenase subunit 6 [Pisum sativum] gi|293338575|gb|ADE43548.1| NADH dehydrogenase subunit 6 [Pisum sativum] Length = 176 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 6/171 (3%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 M ++ S VV + NPI+S FSL V + L++L + FVA L++ Sbjct: 6 TMHDFLLVFLGSGLLLGSLGVVLLTNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLI 65 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG----ILAAELIVCASNFMVFSA 117 YVGA+ + +F +M ++ + G I ++ I+ +++ Sbjct: 66 YVGAINILIIFAVMFMNSSEYYQDLNLWTVGDGMTLIVCTSIFVSLITIISDTSWYGIIW 125 Query: 118 EGELSRLVFKG--NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 ++++ + + + IG L T + P E+ ILL+S+IGAIV+ + Sbjct: 126 TTRPNQIIEQDLISTSQQIGIHLSTDFFLPFELISIILLVSLIGAIVVARQ 176 >gi|115604988|ref|YP_784440.1| NADH-plastoquinone oxidoreductase subunit 6 [Drimys granadensis] gi|122164393|sp|Q06GU3|NU6C_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|112032716|gb|ABH88351.1| NADH-plastoquinone oxidoreductase subunit 6 [Drimys granadensis] Length = 176 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + I+ VV NPI+S FSL V + +L + FVA L++Y Sbjct: 7 IHDILLVFLGSGLILGGLGVVLFTNPIFSAFSLGLVLVCISLFHILSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK---RGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VGAV V +F +M ++ + G IL + + + Sbjct: 67 VGAVNVLIIFAVMFMNGSEYYNDFYLWTVGDGVTSLVCTSILFSLITTISDTSWYGIIWT 126 Query: 120 ELSRLVFK---GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S + + +NV+ IG L T + P E+ ILL+++IGAI + + Sbjct: 127 TGSNQIIEQDLISNVQQIGIHLSTDFYLPFELISIILLVALIGAIAMARQ 176 >gi|92115239|ref|YP_575167.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043] gi|91798329|gb|ABE60468.1| NADH dehydrogenase subunit J [Chromohalobacter salexigens DSM 3043] Length = 203 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 75/143 (52%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FYL + +A++++ V+T +P++++ LI + + A +F LGA F + ++VY G Sbjct: 2 EIAFYLSAVVAVLATLGVITGTHPVHALLYLIVSLIAVALVFFALGAPFAGALEVIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ A+ + ++ + + +++ + A+ R+ Sbjct: 62 AIMVLFVFVVMMLNLGESTAQQERAWLRPRTWLGPAVLSSVLLLVLLTSLIGAD-VGGRI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + +G +L+ Y +E Sbjct: 121 HGDTLTAKAVGTLLFGPYLVVVE 143 >gi|167752194|ref|ZP_02424321.1| hypothetical protein ALIPUT_00436 [Alistipes putredinis DSM 17216] gi|167660435|gb|EDS04565.1| hypothetical protein ALIPUT_00436 [Alistipes putredinis DSM 17216] Length = 169 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 8/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + + + F + + + S+ L VT + + + L+F AG++ L F+ + L+ Sbjct: 3 ITLDLIVFTVLAVFTLASAVLAVTTKRILRAATFLLFVLFGTAGIYFQLNYSFLGAVQLL 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y G + V ++F I++ + + AE + F+ +GILA + F+ + Sbjct: 63 IYAGGITVLYVFSILLTSSEGDKAEKLRGYKFV----VGILATLAGLAICLFVTLRHQFL 118 Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 V IG L + Y P E+ +LL ++G I++ + Sbjct: 119 PEHFEHGELAVREIGFALMSPEKQGYLLPFEVISLLLLACIVGGILIARKR 169 >gi|330503263|ref|YP_004380132.1| NADH dehydrogenase subunit J [Pseudomonas mendocina NK-01] gi|328917549|gb|AEB58380.1| NADH dehydrogenase subunit J [Pseudomonas mendocina NK-01] Length = 169 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + +A+ S+ VVT NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYFAAGVAVASTVGVVTNTNPVHALLYLIVSLLAVSMVFFALGAPFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ A +++R ++G ++ V + + Sbjct: 62 AIMVLFVFVVMMLNL-GPAAADQERRWLTPGIWVGPAILSALLLGQLLYVLLNHVSDAHI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + +G L+ Y +E Sbjct: 121 GHTTVEAKAVGISLFGPYLLAVE 143 >gi|262400770|gb|ACY66259.1| NADH dehydrogenase subunit 6 [Brassica napus] Length = 176 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILANSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSID 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIGKVLY 139 + L S + S G + +N + IG L Sbjct: 90 FNLWTVGNGITSVVCTTILFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAISVARQ 176 >gi|294507450|ref|YP_003571508.1| NADH dehydrogenase I, J subunit [Salinibacter ruber M8] gi|294343778|emb|CBH24556.1| NADH dehydrogenase I, J subunit [Salinibacter ruber M8] Length = 169 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 92/162 (56%), Gaps = 1/162 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F+L + +A+ ++ ++ RNP+ S L+ AGL+L L A F+ +I ++VY GA+ Sbjct: 6 MFFLLATVAVAAALGMIIARNPVSSALWLVLNLFCIAGLYLTLNASFIGVIQILVYAGAI 65 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRLV 125 +V FLF+IM+L++ + +G F +G +L ++L+ + + + Sbjct: 66 MVLFLFVIMLLNLSALPELEEIEWASIGGFAVGLVLLSQLLYVVALQFELGVDPIGAEAA 125 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + ++G++L+T+YA L+++G +LL + +GA++L R Sbjct: 126 AEAGSAASLGEILFTRYALHLQVAGILLLAATVGAVLLAQRR 167 >gi|290489846|gb|ADD31330.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Dillenia indica] Length = 176 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 10/149 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPI+S FSL V + ++ + FVA L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIFSAFSLGLVLVCISLFYISANSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 +G ++ + V + ++ + +N + IG Sbjct: 90 FHL--WTIGDGISSLVCTSIFVSLITTIPDTSWYGIIWTTRSNQIIEQDLISNGQQIGIH 147 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + Sbjct: 148 LSTDFVLPFELISIILLVALIGAIAAARQ 176 >gi|27464580|gb|AAO16146.1| NADH dehydrogenase subunit 6 [Sinularia gaweli] Length = 147 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI Sbjct: 54 GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAI 113 Query: 162 VLML----------RHRRDIKRQDISKQLESN 183 +L +QD+ Q+ Sbjct: 114 LLAKQPNSPFLYNSHGESLRSKQDLFLQISRE 145 >gi|171914648|ref|ZP_02930118.1| NADH dehydrogenase subunit J [Verrucomicrobium spinosum DSM 4136] Length = 187 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 20/185 (10%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ FYLFS + ++ +VV +RNP+ S SL+ +F A LF+ L A F+ +I ++VY Sbjct: 1 MPAVLFYLFSALTLVFGLMVVVLRNPVASALSLVMSFAGLAALFISLDAYFIGIIQILVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+V FLFIIM+LDI E + +G + I+ + + + Sbjct: 61 AGAVMVLFLFIIMLLDIKAEALKKVNAFSVVGGALLAIVFIVQLGMILGGLEAGKKTVAD 120 Query: 123 RLVF--------------------KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + +G L+ +Y + +++ G +LL+ IG ++ Sbjct: 121 VPIHFEAAAETQKLPTIKEDLAKKSLPDTKLVGMALFHRYPFQIQLMGALLLVGTIGVVI 180 Query: 163 LMLRH 167 L R Sbjct: 181 LSKRE 185 >gi|295136962|ref|YP_003587796.1| NADH dehydrogenase subunit 6 [Lathyrus sativus] gi|293338684|gb|ADE43656.1| NADH dehydrogenase subunit 6 [Lathyrus sativus] Length = 176 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI--EV 83 NPI+S FSL V + L++L + FVA L++YVGA+ + +F +M ++ + Sbjct: 30 TNPIFSAFSLGLVLVCISLLYILANSHFVAASQLLIYVGAINILIIFAVMFMNSSEYYQD 89 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKVLY 139 + + LI S+ + + + IG L Sbjct: 90 LNLWTVGDGITLIVCTSIFVSLITIISDTSWYGIIWTTRPNQIIEQDLISTSQQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+S+IGAIV+ + Sbjct: 150 TDFFLPFELISIILLVSLIGAIVVARQ 176 >gi|150004308|ref|YP_001299052.1| NADH dehydrogenase I, chain J [Bacteroides vulgatus ATCC 8482] gi|237709344|ref|ZP_04539825.1| NADH dehydrogenase I [Bacteroides sp. 9_1_42FAA] gi|237724578|ref|ZP_04555059.1| NADH dehydrogenase subunit I [Bacteroides sp. D4] gi|254883417|ref|ZP_05256127.1| NADH dehydrogenase subunit I [Bacteroides sp. 4_3_47FAA] gi|265755020|ref|ZP_06089934.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_33FAA] gi|294776881|ref|ZP_06742344.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides vulgatus PC510] gi|319644243|ref|ZP_07998756.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_40A] gi|149932732|gb|ABR39430.1| NADH dehydrogenase I, chain J [Bacteroides vulgatus ATCC 8482] gi|229437137|gb|EEO47214.1| NADH dehydrogenase subunit I [Bacteroides dorei 5_1_36/D4] gi|229456729|gb|EEO62450.1| NADH dehydrogenase I [Bacteroides sp. 9_1_42FAA] gi|254836210|gb|EET16519.1| NADH dehydrogenase subunit I [Bacteroides sp. 4_3_47FAA] gi|263234631|gb|EEZ20210.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_33FAA] gi|294449357|gb|EFG17894.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides vulgatus PC510] gi|317384234|gb|EFV65206.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_40A] Length = 167 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 8/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q + F + + + S L VT + + L+F AG++ L F+ + L+ Sbjct: 1 MTLQLIVFIVLALFIAVCSVLAVTTSRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y G + V ++F I++ + AE K G G ++ + F++ E Sbjct: 61 IYAGGITVLYVFSILLTSSQGDKAERLKN----GKMVAGAISTIAGLAICLFVMLKNEFL 116 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 S V +V IG L QY P E+ +LL ++G I++ + Sbjct: 117 PSHFVHGELDVRTIGHALMGMEKYQYILPFEVISVLLLACIVGGILIARKR 167 >gi|167391857|ref|YP_001671735.1| NADH dehydrogenase subunit 6 [Carica papaya] gi|221272314|sp|B1A987|NU6C_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|166344184|gb|ABY86834.1| NADH-plastoquinone oxidoreductase subunit 6 [Carica papaya] Length = 176 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 8/147 (5%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD-------I 79 NPIYS FSL F + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 31 NPIYSAFSLGFVLACISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYRDF 90 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 ++ S F+ ++ L + + ++ ++ + IG L Sbjct: 91 NLWTIGDGITSLVCTSIFLSLITTILDTSWYGVIWTTRLNQILEQDLISSS-QQIGIHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176 >gi|292559473|ref|YP_003540841.1| NADH dehydrogenase subunit 6 [Hartmannella vermiformis] gi|290775726|gb|ADD62225.1| NADH dehydrogenase subunit 6 [Hartmannella vermiformis] Length = 205 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 107/197 (54%), Gaps = 13/197 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F+ +FM ++ LV+ +NP+ SV L+ F +A LF+LL +F+AM+ ++VY Sbjct: 2 LTEVIFFGLAFMIFLAGLLVIFSKNPVQSVLFLVVVFCLSAQLFVLLEVDFLAMVLIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V FLFI+MML+I + R F + +G++ IV + + + + Sbjct: 62 VGAIAVLFLFIVMMLNIRVVELSEILNRYFPLATIVGLIIFSEIVFSLYYSLGYNYSNIF 121 Query: 123 RLVF-----KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD------- 170 L + +NV ++G VLYT ++ L ISG +LLL+MI +I+L L Sbjct: 122 YLDWYKSFLNHSNVVSLGLVLYTYFSPFLIISGILLLLAMISSIMLTLDLPNSGELNLST 181 Query: 171 -IKRQDISKQLESNPDN 186 +K+Q I Q++ ++ Sbjct: 182 LVKKQSIPDQVDRPTND 198 >gi|27464577|gb|AAO16144.1| NADH dehydrogenase subunit 6 [Cladiella sp. CSM-2002] Length = 147 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%) Query: 42 AAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 AA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ ++A + Sbjct: 1 AAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKIASQDHSHFLP-------V 53 Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 +I S+ + S + + ++ N+ IG LYT Y + I+ +LL +MIGAI Sbjct: 54 GLSIIFLFSSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLIASLVLLAAMIGAI 113 Query: 162 VLML----------RHRRDIKRQDISKQLESN 183 +L RQD+ Q+ Sbjct: 114 LLAKQPNSPFLYNSHGESLRSRQDLFLQISRE 145 >gi|212693816|ref|ZP_03301944.1| hypothetical protein BACDOR_03337 [Bacteroides dorei DSM 17855] gi|212663705|gb|EEB24279.1| hypothetical protein BACDOR_03337 [Bacteroides dorei DSM 17855] Length = 167 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 8/171 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q + F + + I S L VT + + L+F AG++ L F+ + L+ Sbjct: 1 MTLQLIVFIVLALFIAICSVLAVTTSRILRAATYLLFVLFGTAGIYFQLNYSFLGAVQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y G + V ++F I++ + AE K G G ++ + F++ E Sbjct: 61 IYAGGITVLYVFSILLTSSQGDKAERLKN----GKMVAGAISTIAGLAICLFVMLKNEFL 116 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 S V +V IG L QY P E+ +LL ++G I++ + Sbjct: 117 PSHFVHGELDVRTIGHALMGMEKYQYILPFEVISVLLLACIVGGILIARKR 167 >gi|225544175|ref|YP_002720165.1| ndhG [Jatropha curcas] gi|224979616|gb|ACN72743.1| ndhG [Jatropha curcas] Length = 176 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 6/148 (4%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84 NPIYS FSL F V + ++L + FVA L++YVGA+ V LF +M ++ Sbjct: 29 FTNPIYSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYK 88 Query: 85 EPRKKR--GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG----NNVENIGKVL 138 + + S + LI S+ + +N + IG L Sbjct: 89 DFNLWTVGNGVTSLVCTSIFISLITIISDTSWYGIIWTTRTNQIIEQDLISNGQQIGIHL 148 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P + ILL+++IGAI + + Sbjct: 149 STDFFLPFDFISVILLVALIGAIAVARQ 176 >gi|84508581|ref|YP_448629.1| NADH dehydrogenase subunit 6 [Fucus vesiculosus] gi|39653304|gb|AAR29323.1| NADH dehydrogenase subunit 6 [Fucus vesiculosus] Length = 263 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 58/248 (23%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + V++ +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFIFLTILGASLGVKVISTQNPVYSGLYLVLLFFLGSAISFLLGVEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 + V LF++MMLD I+ + +K+ ++G F LI +S M F Sbjct: 65 IAVLVLFVVMMLDVKAIENPWSVNQKRFFYIGISFFVFFLILLISNSSLLMAFRVRSTSI 124 Query: 123 -------RLVFKGNNVENI----------------------------------------- 134 +VF ++ +NI Sbjct: 125 ISLLASFNVVFHNDDTKNILVGLLDENLTELFRLWFFHDQIINSFDKNTMWFVDFDSPCG 184 Query: 135 ----GKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVM 190 +LY+ +A L I+G +LL++M+GAI L L+ + + KQL N++ Sbjct: 185 LNDPSYLLYSTHAILLIIAGVVLLIAMVGAISLTLQKN---CPESLYKQLGRESKNAVFT 241 Query: 191 VKVKSGKG 198 +K K G Sbjct: 242 IKEKPNSG 249 >gi|189162324|ref|YP_001936570.1| NADH dehydrogenase subunit 6 [Fagopyrum esculentum subsp. ancestrale] gi|221272323|sp|B2XWJ4|NU6C_FAGEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|166065410|gb|ABY79785.1| NADH dehydrogenase subunit 6 [Fagopyrum esculentum subsp. ancestrale] Length = 176 Score = 99.3 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 6/170 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + F I+ V+ NPI+S FSL V + +++ ++FVA L++Y Sbjct: 7 IHDFLLVFFGSGLILGGLGVILFTNPIFSAFSLGLVLVCISLFYIIANSQFVASAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRK------KRGFLGSFFIGILAAELIVCASNFMVFS 116 VGA+ V +F +M ++ R + + +L ++ + ++++ Sbjct: 67 VGAINVLIIFAVMFINGLEYDKNLRLFTLGDGMTLVICTGIFFLLITTILNTSGYGIIWT 126 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + NN + IG L T + P E+ ILL+++IGAI + + Sbjct: 127 TKLNQILEQDLINNSQQIGIHLSTDFFPPFELISIILLVALIGAIAVARQ 176 >gi|298246360|ref|ZP_06970166.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter racemifer DSM 44963] gi|297553841|gb|EFH87706.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Ktedonobacter racemifer DSM 44963] Length = 174 Score = 99.3 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 13/176 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M L F + + + S+ V+ +N +YS SLI A +L LGA F+A++ ++ Sbjct: 1 MTPTILAFAVLAVASAASAIGVIAFKNAVYSALSLILTLFFLAMFYLQLGAMFIAVVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG- 119 +Y GA++V FLF++ ML D A+ + + ++G L ++V A ++++F Sbjct: 61 IYAGAIMVLFLFVVTMLTSD---AQDKGEDRIPWQRYVGSLLGVVLVGALSYLIFKNVSG 117 Query: 120 ---------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 S V NVE G L+ Y +P E++ +++++++GA+V R Sbjct: 118 SPTVLKAGESYSHAVATHGNVEAFGLALFHGYLFPFEVTSLLIVVAILGALVFGRR 173 >gi|11465891|ref|NP_066440.1| NADH dehydrogenase subunit 6 [Ochromonas danica] gi|10505224|gb|AAG18406.1|AF287134_31 NADH dehydrogenase subunit 6 [Ochromonas danica] Length = 205 Score = 99.3 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 90/180 (50%), Gaps = 14/180 (7%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 VV +PI SV LI AF A + L +F ++ +++YVGA+ V FLF++MML Sbjct: 15 CGLFVVFSTSPIESVLFLILAFCIAGIILFLFNLDFFGIMFIIIYVGAIAVLFLFVVMML 74 Query: 78 DIDIE-----------VAEPRKKRGFLGSFFIGI---LAAELIVCASNFMVFSAEGELSR 123 +I ++ + L + F+ + + E+ ++ +++S Sbjct: 75 NIKLQYNFLDRFTFKNIVYILIVLLLLYTIFLNLYSQIFIEMPFLFNSDLLYSYTIIEKG 134 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 + +N++ G+VLY ++ + ++GFILL++++G IVL L + ++ +QL + Sbjct: 135 IFDHLSNIKVFGQVLYNYFSLYVPLAGFILLIALVGVIVLTLHFNKFKNKELDFRQLSRS 194 >gi|78188618|ref|YP_378956.1| NADH dehydrogenase I subunit 6 [Chlorobium chlorochromatii CaD3] gi|78170817|gb|ABB27913.1| NADH dehydrogenase subunit J [Chlorobium chlorochromatii CaD3] Length = 171 Score = 98.9 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FYLF+ + ++S+ VV RN IYS FSL+F F A L++ L A+F+A+ +VVYVG Sbjct: 8 TAIFYLFAAITVLSAAYVVFTRNVIYSAFSLLFTFFGMAALYVFLSADFIAVTQVVVYVG 67 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V LF +M + + + + K L +L +I ++ ++S Sbjct: 68 GILVLLLFGVMFTN---SIMQTKLKSDVLHVIPGVVLLVGMIGSMLYMYYTTSIWKISAT 124 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGF 151 + VE +G ++Y P E+ Sbjct: 125 PLTESIVERVGFETMSRYVLPFEMVSI 151 >gi|56791578|gb|AAW30327.1| NADH dehydrogenase subunit 6 [Agave attenuata] Length = 158 Score = 98.9 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S A++S +VV +NP++SV I F + +GL LLLG +F AMI+ VVY+GA Sbjct: 2 MILSVLSSPALVSGLMVVRAKNPVHSVSFPIPVFRDTSGLLLLLGLDFSAMISPVVYIGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG-ILAAELIVCASNFMVFSAEGELSRL 124 + V FLF++MM +I I R S IG IL E+ N + + Sbjct: 62 IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTHRNTT 121 Query: 125 ----------VFKGNNVENIGKVLYTQYAYPLEISGF 151 V N+E +G +LYT Y+ + Sbjct: 122 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSL 158 >gi|222054370|ref|YP_002536732.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. FRC-32] gi|221563659|gb|ACM19631.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Geobacter sp. FRC-32] Length = 161 Score = 98.9 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 87/165 (52%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FY+ + + ++++ +T ++ ++++ L+ +F A +F LL A VA+ +++Y Sbjct: 1 MEQALFYILAAVTVVATIFAITEKHAVHAIVYLVTSFFALAVIFFLLSAPLVAVFEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IMMLD+ + ++ IL +I+ A +V + + + Sbjct: 61 AGAIMVLFMFVIMMLDLSHPEKIGLPR---FAHWWPAILLGGIILAAFITLVMARQQAVP 117 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V + + + + L+ +Y +EI LL +++GA+ L R Sbjct: 118 GEVAEIG-IRDFSRTLFQKYGIAVEIISMQLLFALVGALYLGRRR 161 >gi|325105658|ref|YP_004275312.1| NADH dehydrogenase subunit J [Pedobacter saltans DSM 12145] gi|324974506|gb|ADY53490.1| NADH dehydrogenase subunit J [Pedobacter saltans DSM 12145] Length = 167 Score = 98.9 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 92/163 (56%), Gaps = 2/163 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FY +F++I S LV+ +NP++SV LI F ++LL A+F+A++ +VY+GA+ Sbjct: 3 LFYFVAFLSIFFSLLVIFTKNPVHSVLYLIATFFTFTIHYILLNAQFLAVVNFIVYMGAI 62 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V FLF++M+++++ + + + G +V A M + L Sbjct: 63 MVLFLFVLMLMNLNKDTEPMKSNLLKIVGVIAGGGLLVTLVAAMKTMYTDSPSVLQNPEI 122 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 V+N+GKVL++++ P E+S +LL +M+GA++L + +R Sbjct: 123 GL--VKNLGKVLFSEFLLPFELSSLLLLSAMVGAVLLAKQEKR 163 >gi|320532479|ref|ZP_08033302.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135309|gb|EFW27434.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Actinomyces sp. oral taxon 171 str. F0337] Length = 292 Score = 98.9 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 77/172 (44%), Gaps = 6/172 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + + V+T + + + ++I ++ A L+++ + F+ + +VVY Sbjct: 27 EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 86 Query: 64 GAVIVFFLFIIMMLDIDIEV---AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GAV+ LF+IM++ + + A R + LA L + + G Sbjct: 87 GAVMTLVLFVIMLVGVGGDEPVGAAGTVMRRPVLILLGLGLAGALTAVVWRSTLPTPVGL 146 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + + LY + +E++ +L+++ +GA+ L R R + Sbjct: 147 KNGAKAAPD---LLAVTLYHDHVVTMELTAILLIVAAVGALTLTHRQRIRAR 195 >gi|291010624|ref|YP_003495129.1| NADH dehydrogenase subunit 6 [Pycnococcus provasolii] gi|258406747|gb|ACV72093.1| NADH dehydrogenase subunit 6 [Pycnococcus provasolii] Length = 199 Score = 98.9 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 112/201 (55%), Gaps = 11/201 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ Q + +A + FLV++ ++P++SV SLIF+FV + + L L + +A+I L+ Sbjct: 1 MLFQQSILCFIAGLACGAGFLVISSKSPVHSVLSLIFSFVLCSFVLLTLEIDILALIFLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI---------GILAAELIVCASN 111 VYVGA+ + FLF++M+L++ + A + F FF+ ++ A V ++ Sbjct: 61 VYVGAIAILFLFVVMILNVKVAEARANLFQYFPLGFFLLSLLYFDLGLLMPASFSVDVAH 120 Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 F+ F E + V +E+IG +LYT + + L +G +LLL+++GAI+L L + Sbjct: 121 FIPF--YLEWPKAVLSFGCLESIGFLLYTYFPFYLIGAGLLLLLAIVGAILLTLHRGVGV 178 Query: 172 KRQDISKQLESNPDNSIVMVK 192 RQ++S Q + + MV+ Sbjct: 179 HRQEVSFQNRRDWVEVLHMVQ 199 >gi|18652802|gb|AAL76100.1| NADH dehydrogenase subunit VI [Hypocrea pseudokoningii] Length = 250 Score = 98.9 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 41/202 (20%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S +A++ V+ +NPI S+ SLI F + + +L G F+ L+VY+GAV + Sbjct: 22 ILSVIALLFGIAVIVNKNPIASLLSLIGLFASISVYLILSGLTFIGFSYLIVYIGAVSIL 81 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--------------- 114 FLFI+M+++I + + FI IL + + + Sbjct: 82 FLFILMLINIRTSELQSNNINSIPLALFITILLNYALFQLLPYSIAIINSYNNKLSNIIY 141 Query: 115 --------------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 F + + +++ IG +LYT Y L I Sbjct: 142 YLPTSKYNDIITHISKNLDINTANVMFVTSNSWDGNMAETSHISTIGNILYTSYNMWLFI 201 Query: 149 SGFILLLSMIGAIVLMLRHRRD 170 + FILLL+M+GAI++ ++ R+ Sbjct: 202 ASFILLLAMVGAIIITIKQERN 223 >gi|325121089|gb|ADY80612.1| NADH dehydrogenase I chain J [Acinetobacter calcoaceticus PHEA-2] Length = 172 Score = 98.9 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 4 FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVF 126 V F+F++MML++ E +K ++ L + L+ +M+ +S L Sbjct: 64 VLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGA 123 Query: 127 KGNNVENIGKVLYTQYAYPLE 147 + + +G+ L+T Y +E Sbjct: 124 QVIGPKVVGQALFTHYLLLVE 144 >gi|148656358|ref|YP_001276563.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus sp. RS-1] gi|148568468|gb|ABQ90613.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Roseiflexus sp. RS-1] Length = 169 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 2/163 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + + +AI + ++ N I+S L+ FV + L++LL A F+ +I L+VY Sbjct: 1 MELVIFLITAVVAIAGAVAMLLSPNAIHSAIFLLINFVAISVLYVLLYAPFLFVIQLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+IV FLF++M+L E AE ++R LAA L+ + + + Sbjct: 61 AGAIIVLFLFVVMLLGA--ERAEDTRERFAWQRPLGVSLAAILLGLLGYLALRNPSAGAT 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 E I + L+T Y P EI+ F+LL +++G +VL + Sbjct: 119 VADQHFAAPERIAEALFTTYLLPFEITAFLLLAAIVGVVVLHM 161 >gi|313199668|ref|YP_004021284.1| NADH-plastoquinone oxidoreductase subunit 6 [Isoetes flaccida] gi|291575397|gb|ADE18110.1| NADH-plastoquinone oxidoreductase subunit 6 [Isoetes flaccida] Length = 189 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 10/174 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + F I+ VV++ N +YS F + +LLL A+FVA + + ++ Sbjct: 8 IHEAIFVSLESGPILGGPGVVSLTNIVYSAPLSGSVFACISPPYLLLNADFVAAVQISIH 67 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV V + + + + G L L ++ ++ +S Sbjct: 68 VGAVNVSIVSAVTSTNEPQSFHLSTYRTA--GDGITLALCISLFFLPIIMILDTSWSRVS 125 Query: 123 RLVFKGN--------NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 +V G +V+ IG L T P E+ +LL++++GAI R + Sbjct: 126 LIVLPGGIVEEPLTDDVQRIGSHLLTDSLLPFELLSIVLLVALVGAITTARRGK 179 >gi|313183964|ref|YP_004021818.1| NADH-plastoquinone oxidoreductase subunit 6 [Equisetum arvense] gi|281371684|gb|ADA63617.1| NADH-plastoquinone oxidoreductase subunit 6 [Equisetum arvense] Length = 200 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + I+ S VV++ N IYS F L F F+ A L+L L A+F+A +++YVGAV V Sbjct: 14 IIETGIILGSLGVVSLSNIIYSAFLLGFVFICIALLYLTLNADFLAAAQILIYVGAVNVL 73 Query: 70 FLFIIMMLDIDIEV--AEPRKKRGFLGSFFIGILAAELIVCASNFMV---FSAEGELSRL 124 +F +M+++ E+ E + L L N +S + ++ L Sbjct: 74 IVFAVMLINKPKEINTLEKWNISNNISLLLCTSLFVSLSFTILNTNWSNLYSIQHSVNIL 133 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +N+ IG L T++ P E+ +LL+++IGAI + R Sbjct: 134 DQMPSNIRLIGNNLLTKFLIPFELLSILLLVALIGAITIARR 175 >gi|222839810|ref|YP_002587031.1| NADH dehydrogenase subunit 6 [Glomus intraradices] gi|306960129|ref|YP_003875545.1| NADH dehydrogenase subunit 6 [Glomus irregulare] gi|222136772|gb|ACM45004.1| NADH dehydrogenase subunit 6 [Glomus intraradices] gi|306490559|gb|ADM94800.1| NADH dehydrogenase subunit 6 [Glomus irregulare] Length = 192 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 21/190 (11%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F+A++S+ V+T NPI +V LI F+ + LLG F+A+ L++Y Sbjct: 1 MSPFLLELLPFVAVLSAIFVITAVNPILAVLFLIAVFITVSAYLALLGLTFLALSYLIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119 VGA+ + FLF+IMMLDI + + ++ + + +F + Sbjct: 61 VGAIAILFLFVIMMLDIKLAELSSSGEEASKVYPIAFLIGTPFLWTLTGSPLFRGDTLYS 120 Query: 120 ------------------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 + + L +N+ ++G LYT Y L +G ILLL++IG I Sbjct: 121 WFDQTTLGIAHISDPSALQWTNLFAAFSNIHSLGVCLYTIYPLWLIYAGIILLLAIIGPI 180 Query: 162 VLMLRHRRDI 171 +L L Sbjct: 181 ILCLDKTSGS 190 >gi|164565466|ref|YP_001649183.1| NADH dehydrogenase subunit 6 [Seriatopora hystrix] gi|164565480|ref|YP_001649196.1| NADH dehydrogenase subunit 6 [Seriatopora caliendrum] gi|148669052|gb|ABR01610.1| NADH dehydrogenase subunit 6 [Seriatopora hystrix] gi|148669076|gb|ABR01623.1| NADH dehydrogenase subunit 6 [Seriatopora caliendrum] Length = 187 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 8/186 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 F + F I S +VV+ NP+ S+F L+ F+N+A FLLLG +F+A++ L++YVG Sbjct: 2 EFFSFFFILGIIGSGVMVVSALNPVLSIFWLVLVFINSAVFFLLLGIDFLALMFLLIYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--------VCASNFMVFS 116 A+ + FLF+IM+L++ +++ IG + + +F + + Sbjct: 62 AIAILFLFVIMLLNLTDYPPVLKREVDMTNYIPIGFIIGIFFFSEIASSGLFLGSFQIEN 121 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + + +N+E +G++LY L ++ FILL++MIG IVL K+QD+ Sbjct: 122 WDLSFPWFLISYHNIEALGQILYVSGFCLLLLASFILLVAMIGVIVLTQETEFLSKKQDL 181 Query: 177 SKQLES 182 Q+ Sbjct: 182 FFQINR 187 >gi|169634173|ref|YP_001707909.1| NADH dehydrogenase I chain J [Acinetobacter baumannii SDF] gi|184157037|ref|YP_001845376.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter baumannii ACICU] gi|239501286|ref|ZP_04660596.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter baumannii AB900] gi|260551025|ref|ZP_05825230.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter sp. RUH2624] gi|260555658|ref|ZP_05827878.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter baumannii ATCC 19606] gi|262280138|ref|ZP_06057923.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter calcoaceticus RUH2202] gi|299771411|ref|YP_003733437.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter sp. DR1] gi|332872612|ref|ZP_08440580.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6014059] gi|169152965|emb|CAP02011.1| NADH dehydrogenase I chain J [Acinetobacter baumannii] gi|183208631|gb|ACC56029.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter baumannii ACICU] gi|193076542|gb|ABO11200.2| NADH dehydrogenase I chain J [Acinetobacter baumannii ATCC 17978] gi|260405973|gb|EEW99460.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter sp. RUH2624] gi|260410569|gb|EEX03867.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter baumannii ATCC 19606] gi|262260489|gb|EEY79222.1| NADH:ubiquinone oxidoreductase subunit 6 [Acinetobacter calcoaceticus RUH2202] gi|298701499|gb|ADI92064.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter sp. DR1] gi|332739141|gb|EGJ70000.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6014059] Length = 173 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVF 126 V F+F++MML++ E +K ++ L + L+ +M+ +S L Sbjct: 65 VLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGA 124 Query: 127 KGNNVENIGKVLYTQYAYPLE 147 + + +G+ L+T Y +E Sbjct: 125 QVIGPKVVGQALFTHYLLLVE 145 >gi|141061|sp|P03883|YMCC_EMENI RecName: Full=Uncharacterized 25.4 kDa protein in COX3 5'region; AltName: Full=URF-C gi|12706|emb|CAA30030.1| unnamed protein product [Emericella nidulans] gi|472821|gb|AAA99206.1| unknown protein [Emericella nidulans] Length = 228 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 35/197 (17%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +F ++I + RNP+ SV LI FVN AG+ +L G ++ + ++VYVGAV Sbjct: 32 FLDIFYIISITFGVFTIISRNPVVSVLFLIGLFVNIAGILILAGINYLGLSYILVYVGAV 91 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL--------------------- 105 + FLFI+M+++I I + +L + Sbjct: 92 SILFLFILMLINIRISELLSETNNDIPLAVLTVLLFYYIIGQVLPCNLTDKTIISSLSNR 151 Query: 106 --------------IVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGF 151 IV + + + + + + + IG ++YT Y+ L IS Sbjct: 152 FTGIYNIDISNQSSIVGINQEIGYVSSKGWDNTLVEFTQISGIGNIMYTNYSIWLIISSV 211 Query: 152 ILLLSMIGAIVLMLRHR 168 ILLL M+GAIV+ ++ + Sbjct: 212 ILLLGMVGAIVITIKQK 228 >gi|324309718|gb|ADY18499.1| NADH dehydrogenase subunit 6 [Phaeodactylum tricornutum] Length = 200 Score = 98.6 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 11/196 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV ++ FY FS +IS+ +VV ++PI+S+ L+ +F+ ++ + LL EF+A++ ++ Sbjct: 1 MVGANVLFYFFSIFLVISAAIVVFSQHPIFSLLFLVLSFLTSSFILFLLECEFLALLFVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV----------CAS 110 VYVGA+ V FLF IMML+ + + F GI + + S Sbjct: 61 VYVGAIAVLFLFAIMMLEFKLHNLAKTLTKYIPAGIFFGIFSFFPLFQQVSNQFRTNFHS 120 Query: 111 NFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR-HRR 169 + F+ L+ +V G++LY+ + +G ILL+ +IG + L + + Sbjct: 121 DSFYFNKYTNWLDLIDATTDVVVYGQILYSYFVLQFLFAGLILLVVLIGVVYLTNNWNNQ 180 Query: 170 DIKRQDISKQLESNPD 185 + Q I KQL Sbjct: 181 KVTDQAIFKQLSRTFK 196 >gi|325067547|ref|ZP_08126220.1| NADH:ubiquinone oxidoreductase subunit J [Actinomyces oris K20] Length = 281 Score = 98.2 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 81/171 (47%), Gaps = 4/171 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F + + + + V+T + + + ++I ++ A L+++ + F+ + +VVY Sbjct: 27 EAIVFGVVALVTVACGIGVLTAKRAVNAAINMIGIMISLAVLYIVNESPFMGITQVVVYT 86 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV+ LF+IM++ + + EP G + + IL + A +V+ + Sbjct: 87 GAVMTLVLFVIMLVGVGGD--EPVGAAGTVMRRPVLILLGLGLAGALTAVVWRSTLPTPA 144 Query: 124 LVFKGNNVE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + G + LY + +E++ +L+++ +GA+ L R R + Sbjct: 145 GLKDGAKAAPDLLAVTLYHDHVVTMELTAILLIVAAVGALTLTHRQRIRAR 195 >gi|239907424|ref|YP_002954165.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio magneticus RS-1] gi|239797290|dbj|BAH76279.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio magneticus RS-1] Length = 172 Score = 98.2 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F +S +A+ L V+ + + ++ L+ + AGL+LLL A+FVA++ ++ Sbjct: 4 MYLGQTAFAFYSLIALAGGVLAVSAASLVRAMLGLVVSLFGVAGLYLLLLADFVALMQIL 63 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFMVFSAE 118 +YVGAV V F IM+ + E + RG L F +L A ++V + Sbjct: 64 IYVGAVTVLIFFAIMLTRASADGGEGQGPGLRGSLRGVFGALLPAGILVPC-----LAVY 118 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 G K + +G L Y E+ +LL +M GA++L R K Sbjct: 119 GVAGFPTPKNVSPAELGAGLLGPYTMAFELISVVLLAAMAGAVLLAFEKRGAAK 172 >gi|197131410|gb|ACH47223.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium carolinianum] Length = 176 Score = 98.2 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 N IYS FSL F+ + ++L + FVA L++YVGA+ + +F +M ++ + Sbjct: 30 TNLIYSAFSLGLVFICISLFYILANSHFVAAAQLLIYVGAINILIIFAVMFINGSEYSKD 89 Query: 86 PRKKRGFLG--SFFIGILAAELI--VCASNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139 G S L LI + +++ +++V K +N + IG L Sbjct: 90 LNLGTVGDGATSLVCTTLFLSLISNILDTSWYGIIWTTRATQIVEKDLISNSQQIGIRLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IGAI + + Sbjct: 150 TDFFLPFELISIILLVALIGAIAVARQ 176 >gi|289606445|emb|CBI61288.1| putative NADH dehydrogenase subunit 6 [Sordaria macrospora] Length = 238 Score = 98.2 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 45/204 (22%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S +AI V+ +NPI SV LI F + + +LLG F+ + L+VY+GA+ + Sbjct: 17 IISILAIFCGISVIVNKNPIISVLFLIGLFASVSSYLILLGLSFIGLAYLIVYIGAISIL 76 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112 FLFI+M+++I I + + +GI + + + Sbjct: 77 FLFILMLINIRISELQSNTNNSIPLTIILGISLSYSLFQLLPYDIAILSNFSSNINNNLY 136 Query: 113 ----------------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAY 144 ++F + + N++ IG V+Y+ Y+ Sbjct: 137 NLSMNKQNNGNLELIPLPQFHCSLKNNDLLFVTSKIWDGNLAESNHITTIGNVMYSNYSI 196 Query: 145 PLEISGFILLLSMIGAIVLMLRHR 168 L ++ FILLL+M+G+IV++++ Sbjct: 197 WLFLASFILLLAMVGSIVIIMKSN 220 >gi|304311503|ref|YP_003811101.1| NADH dehydrogenase, chain J [gamma proteobacterium HdN1] gi|301797236|emb|CBL45456.1| NADH dehydrogenase, chain J [gamma proteobacterium HdN1] Length = 153 Score = 98.2 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 77/146 (52%), Gaps = 3/146 (2%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 ++ RNP++ + +I + + A +F +GA F A + ++VY GA++V F+F++MML++ Sbjct: 3 MLFSRNPVHGLLYMIVSLLAVAMVFFAVGAPFAAALEMIVYAGAIMVLFVFVVMMLNLGG 62 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141 EV + ++ + + + +++ ++ + ++ + +G +L+ Sbjct: 63 EVELLERVWLQPRTWVLPAVLSAVVLVQLVSFLWDSAPSIAGQEVSP---KQVGILLFGP 119 Query: 142 YAYPLEISGFILLLSMIGAIVLMLRH 167 Y +E++ ILL +++ A+ L R Sbjct: 120 YLLAVELASMILLGALVVALHLGRRE 145 >gi|215484511|ref|YP_002326746.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii AB307-0294] gi|213988115|gb|ACJ58414.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii AB307-0294] Length = 172 Score = 98.2 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 4 FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 63 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVF 126 V F+F++MML++ E +K ++ L + L+ +M+ +S L Sbjct: 64 VLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGA 123 Query: 127 KGNNVENIGKVLYTQYAYPLE 147 + + +G+ L+T Y +E Sbjct: 124 RVIGPKVVGQALFTHYLLLVE 144 >gi|169797050|ref|YP_001714843.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AYE] gi|213156544|ref|YP_002318205.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB0057] gi|301510621|ref|ZP_07235858.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB058] gi|301595906|ref|ZP_07240914.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB059] gi|332852139|ref|ZP_08433966.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6013150] gi|332867538|ref|ZP_08437691.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6013113] gi|169149977|emb|CAM87871.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AYE] gi|213055704|gb|ACJ40606.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB0057] gi|332729511|gb|EGJ60850.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6013150] gi|332733955|gb|EGJ65100.1| NADH-quinone oxidoreductase subunit J [Acinetobacter baumannii 6013113] Length = 173 Score = 97.8 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++ Sbjct: 5 FYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVF 126 V F+F++MML++ E +K ++ L + L+ +M+ +S L Sbjct: 65 VLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGA 124 Query: 127 KGNNVENIGKVLYTQYAYPLE 147 + + +G+ L+T Y +E Sbjct: 125 RVIGPKVVGQALFTHYLLLVE 145 >gi|49147174|ref|YP_025767.1| NADH dehydrogenase subunit 6 [Pseudendoclonium akinetum] gi|33439189|gb|AAQ18726.1| NADH dehydrogenase subunit 6 [Pseudendoclonium akinetum] Length = 203 Score = 97.8 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 15/197 (7%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +F + I S+ VV NP+Y+V LI AF NA+ L LL G +++A + +V+YVGA Sbjct: 3 LFIIFCALLIASALFVVQCNNPVYAVLFLILAFFNASALTLLAGHDYLAALLIVLYVGAT 62 Query: 67 IVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNF------------- 112 FFLF IM+L+I I E++E R K + + ILA +L ++F Sbjct: 63 CTFFLFAIMILNIQIAEISEKRLKLAPISAIIGIILALQLETIVASFESPIVMDYLPLIS 122 Query: 113 -MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + S ++ L+ + +G +LYT YA L ++ ILL +MIG+I L L Sbjct: 123 SIDSSGPEGVALLIDTSTQIYGLGAILYTHYASFLILASLILLSAMIGSISLTLSKGTGN 182 Query: 172 KRQDISKQLESNPDNSI 188 RQ + +Q + ++ Sbjct: 183 LRQQVFQQNIRDFKQTV 199 >gi|15597841|ref|NP_251335.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PAO1] gi|107102165|ref|ZP_01366083.1| hypothetical protein PaerPA_01003215 [Pseudomonas aeruginosa PACS2] gi|116050632|ref|YP_790549.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa UCBPP-PA14] gi|152984819|ref|YP_001347925.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PA7] gi|218891194|ref|YP_002440060.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa LESB58] gi|254235627|ref|ZP_04928950.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa C3719] gi|254241075|ref|ZP_04934397.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 2192] gi|313107684|ref|ZP_07793866.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 39016] gi|81622298|sp|Q9I0J3|NUOJ_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|9948714|gb|AAG06033.1|AE004693_4 NADH dehydrogenase I chain J [Pseudomonas aeruginosa PAO1] gi|115585853|gb|ABJ11868.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa UCBPP-PA14] gi|126167558|gb|EAZ53069.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa C3719] gi|126194453|gb|EAZ58516.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 2192] gi|150959977|gb|ABR82002.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa PA7] gi|218771419|emb|CAW27186.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa LESB58] gi|310880368|gb|EFQ38962.1| NADH dehydrogenase I chain J [Pseudomonas aeruginosa 39016] Length = 166 Score = 97.8 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 73/143 (51%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + +A++++ V+T NP++++ LI + + + F LGA F + ++VY G Sbjct: 2 EFAFYFAAGVAVLATLRVITNSNPVHALLYLIISLLAISMTFFSLGAPFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E ++ ++G A L++ +V + + + Sbjct: 62 AIMVLFVFVVMMLNLGPAVVEQE-RKWLTPGIWVGPSALALVLLVELLVVLARTPSGAGI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G LY Y +E Sbjct: 121 GHTTVDAKAVGISLYGPYLLVVE 143 >gi|296388894|ref|ZP_06878369.1| NADH dehydrogenase subunit J [Pseudomonas aeruginosa PAb1] Length = 166 Score = 97.4 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 73/143 (51%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + +A++++ V+T NP++++ LI + + + F LGA F + ++VY G Sbjct: 2 EFAFYFAAGVAVLATLRVITNSNPVHALLYLIISLLAISMTFFSLGAPFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E ++ ++G A L++ +V + + + Sbjct: 62 AIMVLFVFVVMMLNLGPAVVEQE-RKWLTPGIWVGPSALALVLLVELLVVLARTPSGAGI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G LY Y +E Sbjct: 121 GHTTIDAKAVGISLYGPYLLVVE 143 >gi|302521255|ref|ZP_07273597.1| NADH dehydrogenase subunit I J [Streptomyces sp. SPB78] gi|302430150|gb|EFL01966.1| NADH dehydrogenase subunit I J [Streptomyces sp. SPB78] Length = 263 Score = 97.4 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F LF + ++ + VT + +++ L+ A +LLL AEF+A + +++YVG Sbjct: 21 EIAFVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 80 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I ++ R + + +LAA +V + L Sbjct: 81 SVVVLLLFGLMLTRAPIGRSDDADSRNRPLAAAVALLAAAGLVWVVTDAFRTTYIHLDGA 140 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 +G G L+ + P E Sbjct: 141 HPQGTTAVT-GAFLFRHWVLPFE 162 >gi|126165905|ref|YP_209564.2| NADH dehydrogenase subunit 6 [Huperzia lucidula] Length = 196 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 8/156 (5%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 I+ S VV N +YS F L + V + L++LL A+FVA + +++YVG + V +F + Sbjct: 19 VILGSLGVVLFTNIVYSAFLLGWVPVCISFLYILLNADFVAAVQILIYVGTINVLIVFAV 78 Query: 75 MMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 M+++ + S F+ I+AA L S + ++ Sbjct: 79 MLINKPQYFRFLKYWTVGDGTALALCTSPFLSIIAAILSTPWSKISLIVLSNKIVEEPLT 138 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +NV+ IG T P E+ ILL++ +GAI + Sbjct: 139 -DNVQRIGFHSLTDSPLPFELLSIILLVAPVGAITM 173 >gi|309322198|ref|YP_003934113.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum] gi|197131414|gb|ACH47225.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum] gi|300069291|gb|ADJ66412.1| NADH-plastoquinone oxidoreductase subunit 6 [Geranium palmatum] Length = 176 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 N IYS FSL F+ + ++L + FVA L++YVGA+ + LF +M ++ + Sbjct: 30 TNLIYSAFSLGLVFICISLFYILANSHFVAAAQLLIYVGAINILILFAVMFINGSEYSKD 89 Query: 86 PRK--KRGFLGSFFIGILAAELI--VCASNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139 R S L LI + +++ +++V K +N + IG L Sbjct: 90 LNLGIVRDGATSLVCTTLFLSLISNILDTSWYGIIWTTRATQIVEKDLISNSQQIGIRLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+++IG+I + + Sbjct: 150 TDFFLPFELISIILLVALIGSIAVARQ 176 >gi|187764076|ref|YP_001876525.1| NADH dehydrogenase subunit 6 [Dictyostelium fasciculatum] gi|160688784|gb|ABX45199.1| NADH dehydrogenase subunit 6 [Dictyostelium fasciculatum] Length = 241 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 43/224 (19%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ + + A++ + +V NPIYSV +LI FV + + +LL EF+A I ++ Sbjct: 1 MNVELMIMNIIIVGALVCLYNIVKNINPIYSVLNLIVMFVCYSSMLILLDQEFLACIFIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEG 119 V VGAV V FLFIIMM++I + + K+ F+G+ + L + S +M+ E Sbjct: 61 VNVGAVAVLFLFIIMMINITMVEIKENMKKYLPYITFMGLNIFMFLFIIGSRYMLTVPEN 120 Query: 120 ------------------------------------ELSRLVFKGNNVENIG-KVLYTQY 142 + L K +++NIG +LY+ Sbjct: 121 MTEHVYEQFFTQLAKDNELSLGNVMKESYLININYVNIYELFIKTTDIKNIGANILYSSN 180 Query: 143 AYPLEISGFILLLSMIGAIVLMLR-----HRRDIKRQDISKQLE 181 + ++ +LL++M+G I L + K Q++ Q+ Sbjct: 181 SLWFVLACLMLLIAMVGVINLTDEFLNSTRFKGNKSQNLFHQIS 224 >gi|71057052|emb|CAJ18331.1| NADH dehydrogenase subunit 6 [Secale cereale] Length = 220 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL----------VFKGNNV 131 E+ E + + I E+ N + + V N+ Sbjct: 4 EIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTTSLRYTVYAGKVRSWTNL 63 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMV 191 E +G +LYT Y+ +S ILL++MIGAIVL + +KRQD+ ++ + +I M Sbjct: 64 ETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHGTTKVKRQDVFRRNALDSRRTI-MR 122 Query: 192 KV 193 + Sbjct: 123 SM 124 >gi|322422447|ref|YP_004221873.1| NADH dehydrogenase subunit 6 [Penicillium digitatum] gi|316891701|gb|ADU57309.1| NADH dehydrogenase subunit 6 [Penicillium digitatum] Length = 216 Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 36/195 (18%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + ++I+ L ++ RNP+ SV LI FVN AGL +L+G F+ + ++VYVGAV + Sbjct: 22 IIYLVSILLGILTISSRNPVVSVLFLIGLFVNVAGLLILVGYNFLGLAYILVYVGAVSIL 81 Query: 70 FLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAEL----------------------- 105 FLFI+M+++I + E+ L S I I + Sbjct: 82 FLFILMLINIRVSELFNDTNNDLPLASLTIIIFYYIMAQVLPLNFTENSIVCYLSNSYSD 141 Query: 106 ------------IVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 IV + +++ + + +V +IG ++YT Y+ L ++ IL Sbjct: 142 IYNVQLDNELFNIVDLKQQISYASSKGWDNSLIEPTHVASIGNIMYTSYSMWLIVTSIIL 201 Query: 154 LLSMIGAIVLMLRHR 168 LL M+GAIV+ ++ + Sbjct: 202 LLGMVGAIVITIKQK 216 >gi|318077268|ref|ZP_07984600.1| NADH dehydrogenase I chain J [Streptomyces sp. SA3_actF] Length = 267 Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 1/163 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F LF + ++ + VT + +++ L+ A +LLL AEF+A + +++YVG Sbjct: 25 EIAFVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 84 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I ++ R + + +LAA +V + L Sbjct: 85 SVVVLLLFGLMLTRAPIGRSDDADSRNRPLAAAVALLAAAGLVWVVTDAFRTTYIHLDGA 144 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +G G L+ + P E +LL +++GAIVL R Sbjct: 145 HPQGTTAVT-GAFLFRHWVLPFEALSVLLLAALVGAIVLSRRR 186 >gi|74325170|ref|YP_316590.1| NADH dehydrogenase subunit 6 [Thalassiosira pseudonana] gi|74100236|gb|AAZ99397.1| NADH dehydrogenase subunit 6 [Thalassiosira pseudonana] Length = 201 Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 12/198 (6%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +LFFY FSF+ I SS + V +N IYSV L+ +FV+++ + LL E+V++I +++YVG Sbjct: 4 NLFFYFFSFVLITSSLMTVFSQNSIYSVLFLVLSFVSSSSILFLLECEYVSLIFIIIYVG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEG--- 119 A+ V FLF++MMLDI + F FIGI L+V S F + Sbjct: 64 AIAVLFLFVVMMLDIKTISLVKDSLKYFPFGSFIGIAFLIEILLVVPSTFEAINPYNISF 123 Query: 120 ------ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML-RHRRDIK 172 + + + ++G +LYT Y +SG ILLL+ IG + L+L R + K Sbjct: 124 LCNFHLDWFNKLDYFTEIMSVGHLLYTDYLIQFLLSGNILLLATIGPVTLVLIRSIKTTK 183 Query: 173 RQDISKQLESNPDNSIVM 190 +Q KQL ++ + + Sbjct: 184 KQITFKQLSRTYNSVLYI 201 >gi|296268313|ref|YP_003650945.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Thermobispora bispora DSM 43833] gi|296091100|gb|ADG87052.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermobispora bispora DSM 43833] Length = 176 Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 3/161 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L +A+ S LVVT + +++ L+ F AG +L+L AEFVA + +++YVG Sbjct: 12 EIVFLLLGLVALGSGVLVVTTKRLVHAALWLVVCFGALAGCYLVLTAEFVAWVQVLIYVG 71 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV+V LF IM+ +E + + + A ++V ++ + L Sbjct: 72 AVVVLLLFGIMLTRAPTGRSEELDSGNRWAAALVALATAGVLVTV---VISGFRDAYAPL 128 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + IG ++ + P E+ +LL ++IGAIV+ Sbjct: 129 EPGRGSAGEIGAGIFRTWVLPFEVLSLLLLAALIGAIVISR 169 >gi|12408587|ref|NP_074916.1| NADH dehydrogenase subunit 6 [Podospora anserina] gi|400641|sp|P15959|NU6M_PODAN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|13304|emb|CAA32648.1| unnamed protein product [Podospora anserina] gi|14035|emb|CAA38769.1| NADH-ubiquinone oxidoreductase subunit 6 [Podospora anserina] Length = 221 Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 36/196 (18%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +FS MA ++ V+ +NPI SV LI F + ++G F+ + ++VY+GAV + Sbjct: 25 IFSIMAFLTGIYVILTKNPIVSVLFLILLFGGISSYLNIIGLNFIGLSYIIVYIGAVSIL 84 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV--------------- 114 FLFI+M+++I + + FIGI+ + + + + Sbjct: 85 FLFILMLINIRTSELQSNTSNSIPLTIFIGIIFSNFLFPMLPYDIVMLSNFYNNYFSEDF 144 Query: 115 ---------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 F V N++ IG ++YT Y L I+ FIL Sbjct: 145 YTIDVNINDNNLNNLYNNVLYFMTSVIWDGSVIDFNHITAIGNIMYTIYNIWLIIASFIL 204 Query: 154 LLSMIGAIVLMLRHRR 169 LL+M+G+IV+ ++ R+ Sbjct: 205 LLAMVGSIVITIKQRK 220 >gi|58578649|ref|YP_203369.1| NADH dehydrogenase subunit 6 [Mortierella verticillata] gi|57545582|gb|AAW51706.1| NADH dehydrogenase subunit 6 [Mortierella verticillata] Length = 200 Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 33/199 (16%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ L +F +++S+ LV+T R+P+ SV LI F+N AG +LLG F+A+ ++VY Sbjct: 1 MNNILLDLLTFTSVLSAILVITARSPVISVLFLIAVFINIAGYLILLGVNFIALSYIMVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGILAAELI------------ 106 +GA+ + FLF+IMML++ + E+ K L L+ ++ Sbjct: 61 IGAIAILFLFVIMMLNVRLTELHEIGSDYSKNFPLAIVVAASLSYIILSNSLTKSIDQIY 120 Query: 107 -----------------VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 N++ + + ++ IG ++Y+ Y L + Sbjct: 121 LITALFDKLNFLNSGINTTTDNYINIGYNTIYNNIFVNYEQIQAIGNIMYSSYGLYLILC 180 Query: 150 GFILLLSMIGAIVLMLRHR 168 F+LLL+M+G I++ L + Sbjct: 181 SFVLLLAMLGPIIITLDKK 199 >gi|94676511|ref|YP_588817.1| NADH-quinone oxidoreductase, chain J [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219661|gb|ABF13820.1| NADH-quinone oxidoreductase, chain J [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 165 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 78/159 (49%), Gaps = 3/159 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L Y F +AI S+ V+T P++++ LI + AG+F ++GA F + ++VY G Sbjct: 2 ELALYFFGLVAIFSALRVITHNKPMHALLYLIITILAIAGVFFVIGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV+V F+F++MM++I ++ + + + L+ ++ ++ Sbjct: 62 AVVVLFIFVVMMINIHCSEQINILRQPIISIIYFILPLILLLAILLYIFWSTSNDSINNQ 121 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + + +G +L+ Y ++++ +LL ++ A L Sbjct: 122 LID---TKTVGVLLFGPYILAVDLASMLLLAGLVVAFHL 157 >gi|318056641|ref|ZP_07975364.1| NADH dehydrogenase I chain J [Streptomyces sp. SA3_actG] Length = 267 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 1/163 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F LF + ++ + VT + +++ L+ A +LLL AEF+A + +++YVG Sbjct: 25 EIAFVLFGLLTFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 84 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I ++ R + + +LAA +V + L Sbjct: 85 SVVVLLLFGLMLTRAPIGRSDDADSRNRPLAAAVALLAAAGLVWVVTDAFRTTYIHLDGA 144 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +G G L+ + P E +LL +++GAIVL R Sbjct: 145 HPQGTTAVT-GAFLFRHWVLPFEALSVLLLAALVGAIVLSRRR 186 >gi|75286704|sp|Q5SCZ0|NU6C_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|50660038|gb|AAT80760.1| NADH-plastoquinone oxidoreductase subunit 6 [Huperzia lucidula] Length = 199 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 8/156 (5%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 I+ S VV N +YS F L + V + L++LL A+FVA + +++YVG + V +F + Sbjct: 22 VILGSLGVVLFTNIVYSAFLLGWVPVCISFLYILLNADFVAAVQILIYVGTINVLIVFAV 81 Query: 75 MMLD-------IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 M+++ + S F+ I+AA L S + ++ Sbjct: 82 MLINKPQYFRFLKYWTVGDGTALALCTSPFLSIIAAILSTPWSKISLIVLSNKIVEEPLT 141 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +NV+ IG T P E+ ILL++ +GAI + Sbjct: 142 -DNVQRIGFHSLTDSPLPFELLSIILLVAPVGAITM 176 >gi|303247485|ref|ZP_07333757.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio fructosovorans JJ] gi|302491181|gb|EFL51073.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio fructosovorans JJ] Length = 171 Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 3/169 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F ++ + + L VT + + ++ L+ A AGL+LLL A+FVA++ ++ Sbjct: 4 MYLGQFAFAFYTLIVLAGGGLAVTAASLVRAMLGLVVALFGVAGLYLLLLADFVALMQIL 63 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGAV V F IM+ + E G + + + A L+ + + G Sbjct: 64 IYVGAVTVLIFFAIMLTRAAADGGEAE---GPGAAGILRAIPAFLVPAGILVPLLAVYGA 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + K + + +G L Y E+ +LL +M GA++L R Sbjct: 121 VGFPTPKNVSPDQLGAGLLGPYTLAFELISVVLLAAMAGAVILAFEKRE 169 >gi|271962240|ref|YP_003336436.1| NADH-ubiquinone oxidoreductase protein, chain J [Streptosporangium roseum DSM 43021] gi|270505415|gb|ACZ83693.1| putative NADH-ubiquinone oxidoreductase protein, chain J [Streptosporangium roseum DSM 43021] Length = 178 Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 3/146 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 Q + F L +A+ S+ LVVT R +++ L+ F AG +L+L AEFVA + +++ Sbjct: 11 TGQEIVFLLLGAVAVGSALLVVTTRQLVHAALWLVVCFGALAGGYLVLTAEFVAWVQVLI 70 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA++ LF IM+ I R + + A ++ Sbjct: 71 YVGAIVALLLFGIMLTRAPIGRTADLDSRNRPAAAVV---AIATAAVLVTVVIDGFRTAY 127 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147 + L G + + +G ++ + P E Sbjct: 128 APLEPGGGSAKELGSSIFRNWVLPFE 153 >gi|182412301|ref|YP_001817367.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus terrae PB90-1] gi|177839515|gb|ACB73767.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutus terrae PB90-1] Length = 169 Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 3/164 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S F +F +A+I++ V RN + + + + + GLF++L A +A + L+VY Sbjct: 1 MASFLFNVFVLLAVIAALGAVLNRNTVNAAMCFMLSLIGVTGLFVMLEAYLLAFVLLLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV FLFI+M+LD P R LG F + A L V Sbjct: 61 AGAVAALFLFIVMLLDTHTTKVRP---RRPLGMFATLVSVALLAVGVLTLYQAPGLAAAP 117 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 G +++ L+T Y P++I GF+LL++M+G IVL + Sbjct: 118 VPTAVGASLKVYAYELFTTYLLPVQIVGFLLLIAMLGVIVLSKK 161 >gi|125213990|dbj|BAF46418.1| NADH dehydrogenase subunit 6 [Rhodotorula glutinis] Length = 222 Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 47/210 (22%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ L + AI+S +V+T +NP+ SV LI F+N AG +LLG ++ ++ L+VY Sbjct: 1 MNNVLLDLLALGAILSGIMVITAKNPVISVLFLIAVFLNVAGYLVLLGVAYLGLVYLIVY 60 Query: 63 VGAVIVFFLFIIMMLDID----IEVAEPRKKRGFLGSFFIGILAAELIVC--------AS 110 VGA+ + FLF+IMML++ +E + K +G+F + EL+ S Sbjct: 61 VGAIAILFLFVIMMLNLRLVELVETGQEYTKSLPMGAFLGSLFFFELLSILPVSYHDGGS 120 Query: 111 NFMVFSAEGELSRLVFKGNN-----------------------------------VENIG 135 + S L+ + +N +E+IG Sbjct: 121 LHVSLSIFNWLNTTLLGISNTDTALDSIHHSVGTEGVHAAFNPVVADSTMTTFTQIESIG 180 Query: 136 KVLYTQYAYPLEISGFILLLSMIGAIVLML 165 LYT + L ++ I LL+M+G IVL + Sbjct: 181 HGLYTYASLWLVVASVIFLLAMVGPIVLCM 210 >gi|148262405|ref|YP_001229111.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Geobacter uraniireducens Rf4] gi|146395905|gb|ABQ24538.1| NADH dehydrogenase subunit J [Geobacter uraniireducens Rf4] Length = 161 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ FY+ + +A+I++ +T ++ ++++ L+ +F A +F LLGA VA+ +++Y Sbjct: 1 MEATLFYILAAVAVIATGFAITEKHTVHAIVYLVTSFFALAVVFYLLGAPLVAVFEVIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F+IMMLD+ P K + L I+ A+ + +A+ + Sbjct: 61 AGAIMVLFMFVIMMLDL----GHPEKVALPGMRDWWPALLLGGIILAAIIALLTAQQQAV 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + +VL+ +Y +EI LL +++GA+ L R Sbjct: 117 IGKLPYVGIRDFSRVLFRKYGIAVEIISMQLLFALVGALYLGRRR 161 >gi|212712284|ref|ZP_03320412.1| hypothetical protein PROVALCAL_03370 [Providencia alcalifaciens DSM 30120] gi|212685030|gb|EEB44558.1| hypothetical protein PROVALCAL_03370 [Providencia alcalifaciens DSM 30120] Length = 181 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 70/139 (50%), Gaps = 1/139 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +A++++ V+T NP++++ L+ + + + +F LGA F + ++VY G Sbjct: 2 EFTFYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E + ++ + + +++ + + S + + Sbjct: 62 AIMVLFVFVVMMLNLGRSVQEQERAWLTPKTWIGPAVLSAVLLGILVYGITSLSHQ-DKT 120 Query: 125 VFKGNNVENIGKVLYTQYA 143 + +G L+ Y Sbjct: 121 EGAIITAKEVGISLFGPYV 139 >gi|312885981|ref|ZP_07745609.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603] gi|311301518|gb|EFQ78559.1| NADH dehydrogenase subunit J [Mucilaginibacter paludis DSM 18603] Length = 183 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 12/179 (6%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ + FY+ F+A+ S+ LV +N + S+F AGL++ A+FVA+ +V Sbjct: 1 MNIEQILFYVMGFIALASALLVAASKNLVRSLFLFFVTLFALAGLYVFALADFVAVTQIV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI-----EVAEPRKKRGFLGSFFIGILAAELIVCAS----- 110 +YVG V+V LF M+ + D+ + G L + + +L ++V A Sbjct: 61 IYVGGVLVLMLFAFMLSNKDVLNNLQQGNNKFISVGKLPALLVAVLFLIVLVNAIIKAQP 120 Query: 111 -NFMVFSAEGELSRLVFKGNN-VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + A + ++ G+N + NIG L T+Y P E+ +L++++IGA L + Sbjct: 121 DSLPWIKASVQHDNVIKPGDNMLSNIGINLMTRYLLPFEVVSILLMMTLIGAAHLARKE 179 >gi|283852193|ref|ZP_06369466.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio sp. FW1012B] gi|283572419|gb|EFC20406.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio sp. FW1012B] Length = 171 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 3/168 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F ++ + + L V + + ++ L+ + AGL+LLL A+FVA++ ++ Sbjct: 4 MYLGQFAFAFYTLIILAGGLLAVGAQGLVRAMLGLVVSLFGVAGLYLLLLADFVALMQIL 63 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGAV + F IM+ + E G + + + A L+ + G Sbjct: 64 IYVGAVTILMFFAIMLTRASADGGEAE---GPGFAGILRAIPAFLVPAGILVPFLAVHGT 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 K + + +G L Y P E+ +LL +M GA++L R Sbjct: 121 PGFATPKNVSPDQLGAGLLGPYTLPFELISVVLLAAMAGAVLLAFEKR 168 >gi|320160248|ref|YP_004173472.1| NADH-quinone oxidoreductase subunit J [Anaerolinea thermophila UNI-1] gi|319994101|dbj|BAJ62872.1| NADH-quinone oxidoreductase chain J [Anaerolinea thermophila UNI-1] Length = 179 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 3/149 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F++ +F+A+ + ++ RN +YS L+ F A L+L+LGA F+A+ + VY G Sbjct: 2 TIVFFVLAFVAVGCAISMLITRNAVYSALFLVLNFATVAILYLILGAPFIALSQITVYAG 61 Query: 65 AVIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 +VIV FLF++M+L + + AEP + + F+ +LA L S G ++ Sbjct: 62 SVIVLFLFVVMLLGAERLPGAEPLRWQRFIAMGLGLVLAVNL--GWSVVQRAGDLGVITA 119 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFI 152 +G+VL+TQY P++I FI Sbjct: 120 PEKGFGAPVEVGRVLFTQYVLPIQIVAFI 148 >gi|281428836|ref|YP_003355013.1| NADH dehydrogenase subunit 6 [Ircinia strobilina] gi|251765336|gb|ACT15488.1| NADH dehydrogenase subunit 6 [Ircinia strobilina] Length = 169 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 8/161 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F YL S ++S+ +V+ ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VY Sbjct: 1 MYLFFCYLLSVGIMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFLAFLLLLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF++M+L ++ + + K + + F L + Sbjct: 61 VGAIMVLFLFVLMILMLNEDELQGEKSKLVVFVFLFFFLFLFCFKI--------GQVTFP 112 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + +G+ LY +Y FILLL+MIG + L Sbjct: 113 NWGANERGIVLLGRGLYIEYGEAFIAGSFILLLAMIGVVEL 153 >gi|156960020|gb|ABU98488.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM++ +V + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 166 -------RHRRDIKRQDISKQLESN 183 +QD+ Q+ Sbjct: 114 SPFLYNSHSESLRSKQDLFLQISRE 138 >gi|50510208|dbj|BAD31376.1| chloroplast NADH dehydrogenase ND6 [Oryza sativa Japonica Group] Length = 172 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 10/147 (6%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NP +S FSL V + L + FVA+ L++YVGA+ V +F +M ++ + Sbjct: 30 TNPTFSAFSLGLVLVCIS----LFNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 85 Query: 86 PRKK---RGFLGSFFIGILAAELIVCA-SNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139 GF I I + + +++ +++V +G NNV+ IG L Sbjct: 86 KNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLA 145 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL+S+IGAI + + Sbjct: 146 TDFYLPFELISIILLVSLIGAITMARQ 172 >gi|297569879|ref|YP_003691223.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfurivibrio alkaliphilus AHT2] gi|296925794|gb|ADH86604.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfurivibrio alkaliphilus AHT2] Length = 173 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 3/167 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F+ F + I + + N I +V L V AG++ L + F+A++ +++Y Sbjct: 10 LAGVVFFGFILLIIFGALVATNAVNLIRAVCGLALCLVGVAGIYYFLQSPFLALMQVLIY 69 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV V +F +M+ + R +R + AA L+ + + Sbjct: 70 AGAVCVAIVFAVMLAEPQGA---KRLERAHPLAGPGAFAAAALMAWGLAALALRTSWPEA 126 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +E++G+ + T + E+ ILL+++IG++VL R RR Sbjct: 127 SSQVNAGALEDVGRAMMTTFVVSFELISLILLVAIIGSLVLARRGRR 173 >gi|218886694|ref|YP_002436015.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757648|gb|ACL08547.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 168 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 15/169 (8%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F + + ++ F+ V + + ++ L+ + AG++LLL A F+A + +++YVGA Sbjct: 7 LAFAFYFLVIVVGCFMAVGCASLVRALVGLVATLLGVAGMYLLLNAPFMAFMQILIYVGA 66 Query: 66 VIVFFLFIIMMLDIDIEVAE------PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 + V F +M+ D E E PR +G L + G L A +++ Sbjct: 67 ICVLIFFALMLARADAEGDEADPAPAPRTFKGVLAAMLPGTLLAPILML---------HP 117 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 S+++ + +G+ L Y P E+ +LL+SM GA++L+ R Sbjct: 118 TASKMIPAEVPLAELGRRLMEDYVLPFELISMVLLISMAGAVLLVWERR 166 >gi|156959919|gb|ABU98412.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959924|gb|ABU98416.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959932|gb|ABU98422.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959940|gb|ABU98428.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959944|gb|ABU98431.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959952|gb|ABU98437.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959956|gb|ABU98440.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959964|gb|ABU98446.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959968|gb|ABU98449.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959980|gb|ABU98458.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959988|gb|ABU98464.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959992|gb|ABU98467.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960000|gb|ABU98473.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960004|gb|ABU98476.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960016|gb|ABU98485.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960024|gb|ABU98491.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960028|gb|ABU98494.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960032|gb|ABU98497.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960036|gb|ABU98500.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM++ +V + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 166 -------RHRRDIKRQDISKQLESN 183 +QD+ Q+ Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138 >gi|261346149|ref|ZP_05973793.1| NADH-quinone oxidoreductase, J subunit [Providencia rustigianii DSM 4541] gi|282565802|gb|EFB71337.1| NADH-quinone oxidoreductase, J subunit [Providencia rustigianii DSM 4541] Length = 180 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 69/139 (49%), Gaps = 1/139 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +A++++ V+T NP++++ L+ + + + +F LGA F + ++VY G Sbjct: 2 EFTFYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E + ++ L + +++ + + S + Sbjct: 62 AIMVLFVFVVMMLNLGRSVQEQERAWLTPKTWIGPSLLSAVLLGILVYGITSISHQEKTE 121 Query: 125 VFKGNNVENIGKVLYTQYA 143 + +G L+ Y Sbjct: 122 GVIIT-AKEVGISLFGPYV 139 >gi|27262370|gb|AAN87466.1| NADH-quinone oxidoreductase chain J [Heliobacillus mobilis] gi|111074964|gb|ABH04826.1| NAD(P)H-quinone oxidoreductase subunit 6 [Heliobacillus mobilis] Length = 169 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 3/143 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY + M I+S+ VV +++ ++S L +F+ AGL++LL A+F+A + ++VY G Sbjct: 7 AAAFYGLAGMTILSAAGVVFLKDIVHSALMLALSFIGVAGLYVLLNADFLAAVQILVYGG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV + F +M+ R + + F+ + A F G+ Sbjct: 67 AVAILIAFGVMLTRRRNMKESNPNNRWVIYASFVSAAFFAICGWALIGTDFKPVGQQVNP 126 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 VE + +L Y E Sbjct: 127 EAA---VEGLASLLLGDYVVAFE 146 >gi|66046434|ref|YP_236275.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae B728a] gi|289679208|ref|ZP_06500098.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae FF5] gi|302185031|ref|ZP_07261704.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. syringae 642] gi|63257141|gb|AAY38237.1| NADH dehydrogenase (quinone) [Pseudomonas syringae pv. syringae B728a] gi|330900635|gb|EGH32054.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. japonica str. M301072PT] gi|330954555|gb|EGH54815.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae Cit 7] gi|330972915|gb|EGH72981.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. aceris str. M302273PT] gi|330981362|gb|EGH79465.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 169 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + +IG + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGALLLAELLYVLFANPTGAGV 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|156959960|gb|ABU98443.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM++ +V + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGXHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 166 -------RHRRDIKRQDISKQLESN 183 +QD+ Q+ Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138 >gi|261886062|ref|ZP_06010101.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 164 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 4/161 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ F FS AI+ S ++ + PI+ SLI V+ AGL+LLL A+ + +I +VVY Sbjct: 1 MELFLFINFSLFAILGSLGLILFKAPIHGALSLIVTLVSIAGLYLLLFAKTLFLIQIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +F++M +I + + K F I+ +I ++ + + Sbjct: 61 AGAIMVLSVFVMMFFNIKSDTLFVKLKPKS----FFVIIPPTVIFAILLDEIWKLPSDFA 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++ +G L+T + E +L ++IG + + Sbjct: 117 IAPLDFGEIQPLGFYLFTNWGLSFEAISLLLTAALIGVVAI 157 >gi|320352996|ref|YP_004194335.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] gi|320121498|gb|ADW17044.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] Length = 184 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 2/163 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + +I + + V R + +V L F AG++ L + F+AM+ +++YVGA Sbjct: 23 IIFLLTVALVVIGALIAVNARRLVRAVAGLAVCFTGLAGVYYFLLSPFLAMMQMLIYVGA 82 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V + F IMM + + K R L + A LI A + + ++ Sbjct: 83 VSILIAFGIMMATPEEQQTPGMKHRSALAG-PLAFSVAALIFAALTLLGLKTQWQVFPRQ 141 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + ++ +G L T + E+ +LLL++IGA+VL R R Sbjct: 142 GSFD-IKAVGMSLLTTHGMVFELISIVLLLAIIGALVLAQRGR 183 >gi|71737794|ref|YP_275287.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558347|gb|AAZ37558.1| NADH-quinone oxidoreductase, J subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323796|gb|EFW79880.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. glycinea str. B076] gi|320327935|gb|EFW83940.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. glycinea str. race 4] gi|330881175|gb|EGH15324.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. glycinea str. race 4] Length = 169 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + +IG + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANPTGAAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|330889652|gb|EGH22313.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. mori str. 301020] Length = 169 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + +IG + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANPTGAAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|28870537|ref|NP_793156.1| NADH dehydrogenase I subunit J [Pseudomonas syringae pv. tomato str. DC3000] gi|213970027|ref|ZP_03398159.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato T1] gi|301381382|ref|ZP_07229800.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato Max13] gi|302062153|ref|ZP_07253694.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato K40] gi|302130463|ref|ZP_07256453.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853785|gb|AAO56851.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213925131|gb|EEB58694.1| NADH dehydrogenase I, J subunit [Pseudomonas syringae pv. tomato T1] gi|330875765|gb|EGH09914.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965584|gb|EGH65844.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017279|gb|EGH97335.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 169 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + +IG + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANPTGAAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|118475160|ref|YP_891370.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp. fetus 82-40] gi|118414386|gb|ABK82806.1| NADH-quinone oxidoreductase chain j [Campylobacter fetus subsp. fetus 82-40] Length = 164 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 4/161 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ F FS AI+ S ++ + PI+ SLI V+ AGL+LLL A+ + +I +VVY Sbjct: 1 MELFLFINFSLFAILGSLGLILFKAPIHGALSLIVTLVSIAGLYLLLFAKTLFLIQIVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V +F++M +I + + K F I+ +I ++ + Sbjct: 61 AGAIMVLSVFVMMFFNIKSDTLFVKLKPKS----FFVIIPPTVIFAILLDEIWKLPSDFG 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++ +G L+T + E +L ++IG + + Sbjct: 117 IAPLDFGEIKPLGFYLFTNWGLSFEAISLLLTAALIGVVAI 157 >gi|226315024|ref|YP_002774920.1| NADH dehydrogenase subunit J [Brevibacillus brevis NBRC 100599] gi|226097974|dbj|BAH46416.1| NADH-quinone oxidoreductase chain J [Brevibacillus brevis NBRC 100599] Length = 169 Score = 95.1 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 4/148 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ S + I + +++ ++ V SL F++ AGLF+LLGAEFV + ++ Sbjct: 1 MTGEFVAFFILSLLTIGGAVFMISFTRVVHMVISLGVTFISIAGLFVLLGAEFVGVAQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VY GA+ + LF IM+ D + R + F+ +L L N + Sbjct: 61 VYSGAISILMLFGIMLTKHDANDEGTGRTWKNRFILLFVIVLFGLLFWGVQNTPWPAPPP 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLE 147 V NN + IG ++T++ P E Sbjct: 121 PADAPV---NNAKEIGIEVFTKFVIPFE 145 >gi|298487556|ref|ZP_07005598.1| NADH-ubiquinone oxidoreductase chain J [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157940|gb|EFH99018.1| NADH-ubiquinone oxidoreductase chain J [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 169 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + +IG + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANQTGAAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 SHTTVDAKAVGISLFGPYLLVVE 143 >gi|257485448|ref|ZP_05639489.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987950|gb|EGH86053.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010719|gb|EGH90775.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 169 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + +IG + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQE-RAWLRPGIWIGPVILGTLLLAELLYVLFANPTGAAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|289649283|ref|ZP_06480626.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. aesculi str. 2250] Length = 169 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFTSGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + +IG + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANQTGAAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|333031509|ref|ZP_08459570.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides coprosuis DSM 18011] gi|332742106|gb|EGJ72588.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides coprosuis DSM 18011] Length = 171 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 6/171 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + +++ F + + + ++ S L VT + S L+F + AG++ L F+ + L+ Sbjct: 3 ITFEAVVFAVLALIIVVFSVLTVTTSRILRSATYLLFVLLGTAGIYFQLNYSFLGAVQLM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G + V ++F I++ + R ++ F++G + A + F++ + Sbjct: 63 VYAGGITVLYVFAILLTS--SKGMNDRAEKLPKSKFWVGAITAVVSFLVCAFLILKNVFK 120 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + + IGK + QY P E+ G +LL +IGAIV+ + Sbjct: 121 EAMFNDVEVGMNQIGKTMLGTEKFQYLIPFELMGVLLLACVIGAIVIARKR 171 >gi|258647049|ref|ZP_05734518.1| NADH dehydrogenase I, subunit 6 [Prevotella tannerae ATCC 51259] gi|260853164|gb|EEX73033.1| NADH dehydrogenase I, subunit 6 [Prevotella tannerae ATCC 51259] Length = 170 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 78/171 (45%), Gaps = 5/171 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ F + + + + S+F V ++ I + L F + AG++ L+G F+ + ++ Sbjct: 1 MDSHNIMFVVLAVLMVFSAFATVLTKSIIRAATYLFFVLLGTAGMYFLMGYTFLGAVQVM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ + K+ S + ++ + A F + + Sbjct: 61 VYAGGIVVLYVFAILLTKGAKDKLSDNTKQKIFASALLSLVGFGAFIYAFIKAGFIKD-K 119 Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRH 167 L+ +++ IG L + Y P E+ +LL ++ A+++ + Sbjct: 120 LAAPDESVISMKEIGMNLLSTEANGYLLPFEVVSLLLLACIVAALLIARKR 170 >gi|187736097|ref|YP_001878209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Akkermansia muciniphila ATCC BAA-835] gi|187426149|gb|ACD05428.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Akkermansia muciniphila ATCC BAA-835] Length = 236 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 4/116 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY+F +A++ S +VV +RNP+ S + +F A + + LGA F+ ++ ++VY G Sbjct: 7 DILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYAG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 A++V F FIIM+L++ E + + S IGI+ A L + +++S G Sbjct: 67 AIMVLFAFIIMLLNVKQETSPFSR----PFSVAIGIIIAGLFLGQLIGIIYSLPGA 118 >gi|156959936|gb|ABU98425.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 17/145 (11%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM++ +V + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165 + + S++ + ++ N+ IG LYT Y + I+ +LL++MIGAI+L Sbjct: 54 FYSLLTNSSKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 166 -------RHRRDIKRQDISKQLESN 183 +QD+ Q+ Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138 >gi|301347607|ref|ZP_07228348.1| NADH dehydrogenase I chain J [Acinetobacter baumannii AB056] Length = 168 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 1/140 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL + +AI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++V Sbjct: 1 YLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIMV 60 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVFK 127 F+F++MML++ E +K ++ L + L+ +M+ +S L + Sbjct: 61 LFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGAR 120 Query: 128 GNNVENIGKVLYTQYAYPLE 147 + +G+ L+T Y +E Sbjct: 121 VIGPKVVGQALFTHYLLLVE 140 >gi|156960008|gb|ABU98479.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM++ +V + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 166 -------RHRRDIKRQDISKQLESN 183 +QD+ Q+ Sbjct: 114 SPFLYNSHGESLRSKQDLXLQISRE 138 >gi|289625434|ref|ZP_06458388.1| NADH dehydrogenase subunit J [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866830|gb|EGH01539.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 169 Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + +IG + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANQTGAAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|298530614|ref|ZP_07018016.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfonatronospira thiodismutans ASO3-1] gi|298509988|gb|EFI33892.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfonatronospira thiodismutans ASO3-1] Length = 174 Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 7/160 (4%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 + ++ F+ V ++ + ++ LI AGLF L+ A F+A++ +++YVGAV V F Sbjct: 19 AIIVVGGFMTVLSQSLVRALVGLIMTLFGVAGLFFLMAAPFIALMQILIYVGAVSVLIFF 78 Query: 73 IIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 IM+ + + R ++ + G++ A ++ A+ S LV + Sbjct: 79 AIMLTNAWPGGDETGRSPGRKYVYAGLAGLVPAVMLATAAI-----RSAPPSFLVPEETE 133 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + +G+ + P E+ +L ++M GA++L RR Sbjct: 134 ISVLGRFFLEDFILPFELISLLLTIAMAGAVILAFEMRRK 173 >gi|282860767|ref|ZP_06269833.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces sp. ACTE] gi|282564503|gb|EFB70039.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces sp. ACTE] Length = 251 Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 2/168 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ + VT + +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 19 EIAFLLVGIATLGAAVVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 78 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +++V LF +M+ I + + + + +A +V + +L Sbjct: 79 SIVVLLLFGLMLTRAPIGRSPDADSGNRWVALGVAVASAGALVWVVVDAFRATWIDLDGP 138 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 +V G L+ + P E +LL +++GAIVL + +D K Sbjct: 139 AQGSTDVT--GAFLFRNWVLPFEALSVLLLAALVGAIVLSRKADKDGK 184 >gi|304312248|ref|YP_003811846.1| NADH dehydrogenase I, subunit J [gamma proteobacterium HdN1] gi|301797981|emb|CBL46203.1| NADH dehydrogenase I, subunit J [gamma proteobacterium HdN1] Length = 175 Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 3/163 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ FYL S + + S +VV N ++S+ LI + + A +F +GA F A + ++VY Sbjct: 1 MEMFTFYLTSIIILTSILMVVISANAVHSLLYLILSSLAMAVIFFQMGAPFAAALEVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F++MML++ E + LG + L A L++ F++F Sbjct: 61 AGAIMVLFVFVVMMLNLGQAAVEEERTLMPLGIWRGPALLAALLLAELAFLLFQQPVASL 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + + +G L+ Y +E++ +L+ ++GA L Sbjct: 121 PVAVYA---KQVGITLFGPYLLAVELASILLMAGLVGAYHLGR 160 >gi|237800534|ref|ZP_04588995.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023394|gb|EGI03451.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. oryzae str. 1_6] Length = 169 Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + +IG + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWIGPVILGTLLLAELLYVLFANQTGAAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|8954362|ref|NP_059351.1| NADH dehydrogenase subunit 6 [Cyanidioschyzon merolae] gi|3927866|dbj|BAA34654.1| NADH-ubiquinone oxidoreductase chain 6 [Cyanidioschyzon merolae strain 10D] Length = 204 Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 113/200 (56%), Gaps = 8/200 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY + + I+SS++V++++N ++S+ L+ F+NAA L ++L EF+A++ L+ Sbjct: 1 MSSELVLFYCLASIIIVSSYIVISLKNSVFSILFLVLIFLNAAALIMMLETEFLAILFLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-------- 112 VYVGA+ V FLF+I++L++ + + L +GI+ + Sbjct: 61 VYVGAIAVLFLFVIIILNVKLSEFYYSIGQYILIGSILGIIFLVQTFLILDTNIEFHFLD 120 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + E + V+ +N+E +G LYT Y Y ++ ILL+++IGAIVL + R +K Sbjct: 121 NIHNLYPEWNFEVYSQSNIEALGSNLYTNYMYVFILAAIILLIAIIGAIVLTIHQRGYVK 180 Query: 173 RQDISKQLESNPDNSIVMVK 192 RQ+I Q+ + +S+ + Sbjct: 181 RQNILNQVSRDFKDSVYYIN 200 >gi|108796794|ref|YP_636372.1| NADH dehydrogenase subunit 6 [Staurastrum punctulatum] gi|122211817|sp|Q32S04|NU6C_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|61393562|gb|AAX45703.1| subunit 6 of NADH-plastoquinone oxidoreductase [Staurastrum punctulatum] Length = 181 Score = 94.3 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 2/168 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + S Y ++ VV IYS L FV A L+LLL A+F+A +++ Sbjct: 9 TINSPILYFLDVGILLGGLGVVFFGKIIYSALFLGVVFVCVALLYLLLNADFLAAAQILI 68 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEG 119 YVGA+ V +F IM+++ +K L F + L + LI+ N Sbjct: 69 YVGAINVLIVFAIMLINKPETKINKKKITFGDILSGFSVFGLFSFLIIMILNTTWLQPTL 128 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +++ IG L T P E+ +LL++++GAI + + Sbjct: 129 VSQEVKNSFQSIDIIGIHLLTDLLLPFELLSILLLVALVGAITIARKE 176 >gi|194333681|ref|YP_002015541.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prosthecochloris aestuarii DSM 271] gi|194311499|gb|ACF45894.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prosthecochloris aestuarii DSM 271] Length = 173 Score = 94.3 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 5/145 (3%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ FYLF+ + + S+ VV +N IYS FSL+F F A L++ L A+F+A+ +VVYVG Sbjct: 7 TIIFYLFAAITVFSAAFVVFSKNVIYSAFSLLFTFFGVAALYVYLSADFIAVTQIVVYVG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSR 123 ++V LF +M + + + R + + GI + ++ ++ A + Sbjct: 67 GILVLLLFGVMFTNKIMTTS----LRTEVVNLIPGIAILFAVTGGLLYVFYTRANWYSTG 122 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEI 148 + +G+ VE IG ++Y P E+ Sbjct: 123 VQLQGSVVERIGLETMSRYVLPFEM 147 >gi|156959928|gb|ABU98419.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 94.3 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM++ +V + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L Sbjct: 54 FYSLLTNSXKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 166 -------RHRRDIKRQDISKQLESN 183 +QD+ Q+ Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138 >gi|258514496|ref|YP_003190718.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfotomaculum acetoxidans DSM 771] gi|257778201|gb|ACV62095.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfotomaculum acetoxidans DSM 771] Length = 169 Score = 94.3 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 3/167 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ FY+ + + + S+ LVV +N ++SV L +F+ AG +L+L A F+AM+ ++V Sbjct: 4 IVSIAAFYILAAVTVGSAVLVVAFKNLVHSVLVLAISFLGVAGFYLMLNASFIAMVQILV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GAV + +F IM+ + S G + A LI + V + E ++ Sbjct: 64 YAGAVCIMVVFGIMLTQQGGMSGSNGFNKQIFAS---GGVVALLIAVIAYLGVNAGEWQI 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 S + V NI ++ ++Y P E++ +LL+++IGA+VL + Sbjct: 121 SAKQVPHDTVGNIAVLMLSKYMIPFEVAALLLLVALIGAVVLAKEVK 167 >gi|237809388|ref|YP_002893828.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tolumonas auensis DSM 9187] gi|237501649|gb|ACQ94242.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Tolumonas auensis DSM 9187] Length = 175 Score = 94.3 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 4/139 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FY S +AI+++ V+T NP++++ LI + + +F LGA FV + ++VY G Sbjct: 2 ELAFYGSSVVAILATLGVITGTNPMHALLYLIVSLIAVGMIFFSLGASFVGAMQVIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + R+ + IL+A + + G + Sbjct: 62 AIMVLFVFVVMMLNLGTAQEQERQWLRPITWIGPLILSAGQMAVFYAAL----HGVPGII 117 Query: 125 VFKGNNVENIGKVLYTQYA 143 + + +G LY Y Sbjct: 118 TGEPITAKQVGIALYGPYV 136 >gi|295837074|ref|ZP_06824007.1| NADH dehydrogenase subunit [Streptomyces sp. SPB74] gi|197697181|gb|EDY44114.1| NADH dehydrogenase subunit [Streptomyces sp. SPB74] Length = 250 Score = 94.3 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F LF + ++ + VT + +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 21 EIAFVLFGLLTFGAALVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 80 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I ++ R + + +LAA +V + +L Sbjct: 81 SVVVLLLFGLMLTRAPIGRSDEADSRNRPLAATVAVLAAAGLVWVVADAFRTTYLDLDGD 140 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 +G G L+ + P E Sbjct: 141 HPQGTTAVT-GAFLFRHWVLPFE 162 >gi|148358102|ref|YP_001249346.1| NADH:ubiquinone oxidoreductase subunit 6 [Gibberella zeae] gi|86142501|gb|ABC86616.1| NADH:ubiquinone oxidoreductase subunit 6 [Gibberella zeae] Length = 226 Score = 94.3 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 41/204 (20%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S A++ L++ +NPI SV LI F N + +L+G F+ + L+VY+GAV + Sbjct: 23 IISITALLCGILIIINKNPIVSVIFLIGLFANISVYLILIGLTFIGLSYLIVYIGAVSIL 82 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112 FLFI+M+++I + + FI ILA I + Sbjct: 83 FLFILMLINIRTSELQSNNRNSVSLGLFITILANFTIFQILPYYMAILNNYSSKLNTILY 142 Query: 113 ------------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 ++F + + + + IG +LYT + + + Sbjct: 143 YLPWNKFSDILNYINKNIDITNANIMFVSSNSWDNNMAETGHTATIGHILYTSHNMWIFM 202 Query: 149 SGFILLLSMIGAIVLMLRHRRDIK 172 + FILLL+M GAI++ +++ + I+ Sbjct: 203 ASFILLLAMTGAIIITIKNEKAIQ 226 >gi|156959976|gb|ABU98455.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959984|gb|ABU98461.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 93.9 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 17/145 (11%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG + + +I ++VYVGA+ + FLF+IM++ +V + +I Sbjct: 1 LGLDXIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 166 -------RHRRDIKRQDISKQLESN 183 +QD+ Q+ Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138 >gi|164421164|ref|YP_001648648.1| NADH dehydrogenase subunit 6 [Hippospongia lachne] gi|158939006|gb|ABW83928.1| NADH dehydrogenase subunit 6 [Hippospongia lachne] Length = 169 Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F YL S ++S+ +V+ ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VY Sbjct: 1 MYLFFCYLLSVGIMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFIAFLLLLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V FLF++M+L ++ + + K + + F L + Sbjct: 61 VGAIMVLFLFVLMILMLNEDELQGEKSKLVVFVFLFVFLFLFCFKI--------GQVTFP 112 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + +G+ LY +Y ILLL+MIG + L Sbjct: 113 NWGANERGIVLLGRGLYIEYGEGFIAGSLILLLAMIGVVEL 153 >gi|70731264|ref|YP_261005.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf-5] gi|68345563|gb|AAY93169.1| NADH-quinone oxidoreductase, J subunit [Pseudomonas fluorescens Pf-5] Length = 166 Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 75/143 (52%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ VVT NP++++ LI + + A F LGA F + ++ Y G Sbjct: 2 EFAFYFASGVAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFSLGAPFAGALEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ A+ + G + ++ A L++ +++FS + + + Sbjct: 62 AIMVLFVFVVMMLNLGPAAAQQERIWLTPGIWIGPVILAALLLAELLYVLFSHQ-SGAGI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GQTTVSAKAVGISLFGPYLLVVE 143 >gi|183599628|ref|ZP_02961121.1| hypothetical protein PROSTU_03115 [Providencia stuartii ATCC 25827] gi|188021880|gb|EDU59920.1| hypothetical protein PROSTU_03115 [Providencia stuartii ATCC 25827] Length = 181 Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 71/139 (51%), Gaps = 1/139 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +A++++ V+T NP++++ L+ + + + +F LGA F + ++VY G Sbjct: 2 EFTFYIAGLVAVLATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E ++ ++ L + +++ + + S + + Sbjct: 62 AIMVLFVFVVMMLNLGRSVQEQEREWLAPKNWIGPALLSAVLLALLVYGITSLSYQ-DGI 120 Query: 125 VFKGNNVENIGKVLYTQYA 143 + + + L+ Y Sbjct: 121 TGTVISAKEVAISLFGPYV 139 >gi|281424347|ref|ZP_06255260.1| NADH dehydrogenase I, subunit 6 [Prevotella oris F0302] gi|281401616|gb|EFB32447.1| NADH dehydrogenase I, subunit 6 [Prevotella oris F0302] Length = 173 Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 4/166 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ + V + + S L+F AG++ LL F+ + VY G Sbjct: 5 VMFCILAVVILGSAIMCVLTKRIMRSATFLLFVLFGVAGIYFLLDYTFLGAAQISVYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + + ++F I ++ + +G I + L+ + + + Sbjct: 65 ITMMYIFAIQLVSKRTLQGLVERFKGSRVVNGILLSIVGLVTVGLVLIKNNFYNAAMQAT 124 Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 +E IG L QY P E LL +IG I++ + Sbjct: 125 DTEVPMEQIGTALLGSDKYQYVLPFEFISLFLLACIIGGIMIARKE 170 >gi|302870007|ref|YP_003838644.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Micromonospora aurantiaca ATCC 27029] gi|302572866|gb|ADL49068.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora aurantiaca ATCC 27029] Length = 182 Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +A+ + LVV R+ + + L+ AG +L+L AE VA + ++ Sbjct: 1 MTGADVLLLALGAVAVGAGALVVATRHLVRAGLWLVVCLGALAGDYLVLTAELVAWVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGAV+V LF +M+ I ++ + G+ + L V + +S Sbjct: 61 IYVGAVVVLLLFAVMLTRAPIGPSDDLDRPGWAAALVGAGSGLGLAVLLIDAFRWS---- 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + E +G+ L+ + P E+ +LL +++GAIVL R DI R+ Sbjct: 117 -RVDLPVAGTAERLGEQLFRSWVLPFEVLSVLLLAALVGAIVL---SRPDIGRRST 168 >gi|218508902|ref|ZP_03506780.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli Brasil 5] Length = 136 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 1/137 (0%) Query: 33 FSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92 +L+ F+N + +F+LL A F+A+I + VYVGA++V FLF+IMM+D+ V + G Sbjct: 1 MALMACFLNISAIFVLLEAPFLAVIQIFVYVGAIMVLFLFVIMMIDVREAVLQRFLPGGN 60 Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152 L + + +L ++ + + E + G+ + + L+ Y P E + I Sbjct: 61 LPALVLVVLLGVEMLVLVLWSDRFSVIE-PVAMRGGDQIRQLSTTLFADYLLPFEAASVI 119 Query: 153 LLLSMIGAIVLMLRHRR 169 LL +++GAIVL + + Sbjct: 120 LLAALVGAIVLARKEQE 136 >gi|156959948|gb|ABU98434.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 140 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 17/145 (11%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM++ +V + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + S + + ++ N+ IG LYT Y + I+ +LL++MIGAI+L + Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPS 113 Query: 169 RDI----------KRQDISKQLESN 183 +QD+ Q+ Sbjct: 114 SPFLYNSHGELLRSKQDLFLQISRE 138 >gi|332971770|gb|EGK10718.1| NADH-quinone oxidoreductase subunit J [Desmospora sp. 8437] Length = 168 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ + AI + ++ ++ V SL F ++ AG+++LL AEF+A+ ++ Sbjct: 4 MSGEFIAFFVLAVCAIGGAVFMLNFTRVVHMVLSLAFTLLSIAGIYVLLNAEFLAVAQVL 63 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y G+V + LF IM+ + R F +G L LI +++ E Sbjct: 64 IYTGSVSILMLFGIMLTRHRDQEETVRPWHSFFSFVGVGALFGILI-----HTIYNTPFE 118 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147 S K V +G++++ QY P E Sbjct: 119 ESTASVKEFTVSRLGEIVFKQYVIPFE 145 >gi|315501488|ref|YP_004080375.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. L5] gi|315408107|gb|ADU06224.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. L5] Length = 182 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +A+ + LVV R+ + + L+ AG +L+L AE VA + ++ Sbjct: 1 MTGADVLLLALGAVAVGAGALVVATRHLVRAGLWLVVCLGALAGDYLVLTAELVAWVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGAV+V LF +M+ I ++ + G+ + L V + +S Sbjct: 61 IYVGAVVVLLLFAVMLTRAPIGPSDDLDRPGWAAALVGAGSGLGLAVLLIDAFRWS---- 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 + E +G+ L+ + P E+ +LL +++GAIVL R DI R+ Sbjct: 117 -RVDLPVAGTAERLGEQLFRSWVLPFEVLSVLLLAALVGAIVL---SRPDIGRRST 168 >gi|268591143|ref|ZP_06125364.1| NADH-quinone oxidoreductase, J subunit [Providencia rettgeri DSM 1131] gi|291313369|gb|EFE53822.1| NADH-quinone oxidoreductase, J subunit [Providencia rettgeri DSM 1131] Length = 180 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 70/139 (50%), Gaps = 1/139 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ L+ + + + +F LGA F + ++VY G Sbjct: 2 EFTFYIAGLVAILATLRVITNTNPVHALLYLVVSLLALSMVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E + ++ + + +++ + + S + + Sbjct: 62 AIMVLFVFVVMMLNLGRSVQEQERAWLTPKNWIGPAVLSAVLLAILVYGITSLSYQ-EGI 120 Query: 125 VFKGNNVENIGKVLYTQYA 143 + +G L+ Y Sbjct: 121 EGTIIGAKEVGISLFGPYV 139 >gi|330810471|ref|YP_004354933.1| NADH-quinone oxidoreductase subunit J [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|19483811|gb|AAL89572.1| NADH dehydrogenase I subunit J [Pseudomonas fluorescens] gi|327378579|gb|AEA69929.1| NADH-quinone oxidoreductase subunit J [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 166 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ VVT NP++++ LI + + A F LGA F + ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFALGAPFAGALEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + + G + ++ V A + Sbjct: 62 AIMVLFVFVVMMLNLGPAAVQQE-RSWLKPGIWAGPVILSALLLGELLYVLFAHQSGQAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|77459833|ref|YP_349340.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf0-1] gi|77383836|gb|ABA75349.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens Pf0-1] Length = 166 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 75/143 (52%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ VVT NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVVTNTNPVHALLYLIISLIAVAMTFFALGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + G + ++ A L++ +++F+ + + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQERTWLKPGIWAGPVILAALLLAELLYVLFAHQSGQA-I 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GQTTVDAKAVGISLFGPYLLVVE 143 >gi|330944408|gb|EGH46423.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. pisi str. 1704B] Length = 169 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A +S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAFVSTLRVITNTNPVHALLYLIISLIAVAITFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V+ +++ +IG + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNL-GPVSVQQERAWLKPGIWIGPVILGALLLAELLYVLFANPTGAGV 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|7524984|ref|NP_050082.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum] gi|6093583|sp|Q37314|NU6M_DICDI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|699594|dbj|BAA03936.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum] gi|4958887|dbj|BAA78064.1| NADH dehydrogenase subunit 6 [Dictyostelium discoideum] Length = 226 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 32/204 (15%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 + +++ NPIYS+ +LI + A + L + EF+A I ++V VGA+ V FLFI+MM+ Sbjct: 17 CTLVILRSVNPIYSILNLIVIYGCYASILLTVEMEFLACIYILVNVGAIAVLFLFIVMMI 76 Query: 78 DIDI-EVAEPRKKRGFLGSFFIGILAAELIVCASNFMV---------------------- 114 +I+I E+ E KK I + L + +N+ + Sbjct: 77 NINIVEIQETMKKYNIYMIVGIIGVVGLLGILITNYQIRIKEEVIADFSMFLINSEVVQL 136 Query: 115 --FSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM------L 165 + + L + ++ +G V+Y Y+ ++ ILL+ M+G I + Sbjct: 137 QATPSYLDFYSLFVETTDIRTMGSNVIYGSYSIWFIMACIILLIGMVGVIYITEDLIIEK 196 Query: 166 RHRRDIKRQDISKQLESNPDNSIV 189 R + +RQDI+ Q+ +I Sbjct: 197 RTLNERRRQDINSQVLREYKITIR 220 >gi|11466441|ref|NP_038447.1| NADH dehydrogenase subunit 6 [Mesostigma viride] gi|14194990|sp|Q9MUL3|NU6C_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|7259584|gb|AAF43885.1|AF166114_97 subunit 6 of NADH-plastoquinoneoxidoreductase [Mesostigma viride] Length = 189 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 3/146 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +Q+L L II + VV + N +YS F L + AG++LLL AEF+A +++Y Sbjct: 7 IQNLSLLLLEIGTIIGALGVVLLPNILYSGFLLGGVLICIAGIYLLLNAEFIAAAQVLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF IM+++ IE P + I + I+ ++ M+F + + Sbjct: 67 VGAINVIILFAIMLVN-KIENLNPSNNQMMRNGLSSFICFSFFILLSN--MIFDTQWIDT 123 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEI 148 V ++ IG +++ + P EI Sbjct: 124 VGVSTKYSISIIGNHIFSDFLLPFEI 149 >gi|317503347|ref|ZP_07961394.1| NADH dehydrogenase subunit J [Prevotella salivae DSM 15606] gi|315665526|gb|EFV05146.1| NADH dehydrogenase subunit J [Prevotella salivae DSM 15606] Length = 173 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 4/166 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ + VT + + + L+ AG++ +L F+ + VY G Sbjct: 5 IMFCILAVIILGSAIVCVTTKRIMRAATFLLCVLFGVAGIYFILDYTFLGAAQISVYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + V ++F+I ++ + +G + + A L+ + + + Sbjct: 65 ITVLYVFVIQLVSKRTLQGLVERFKGKRVFSGVLLCVAGLLTVGLVLIKNNFYNAALQTT 124 Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + IG L QY P E LL +IG I++ + Sbjct: 125 DTEVPMAQIGTALLGSDKYQYVLPFEFISVFLLACIIGGIMIARKE 170 >gi|156959972|gb|ABU98452.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156959996|gb|ABU98470.1| NADH dehydrogenase subunit 6 [Carijoa riisei] gi|156960012|gb|ABU98482.1| NADH dehydrogenase subunit 6 [Carijoa riisei] Length = 141 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 17/145 (11%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG +++ +I ++VYVGA+ + FLF+IM++ +V + +I Sbjct: 1 LGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFL 53 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--- 165 + + S + + ++ N+ IG LYT Y + I+ +L ++MIGAI+L Sbjct: 54 FYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLIASLVLXVAMIGAILLAKQPS 113 Query: 166 -------RHRRDIKRQDISKQLESN 183 +QD+ Q+ Sbjct: 114 SPFLYNSHGESLRSKQDLFLQISRE 138 >gi|242278967|ref|YP_002991096.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio salexigens DSM 2638] gi|242121861|gb|ACS79557.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio salexigens DSM 2638] Length = 174 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 3/172 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 + + F +++ + + + V + + ++ LI + + AG+++L+ A F+A + +++ Sbjct: 4 TLAKIAFVVYTLLILGGGCIAVGAHSLVRAMVGLISSLLGVAGMYMLMAAPFMAFMQILI 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V F IM+ D E +R + A + V + F Sbjct: 64 YVGAVCVLIFFAIMLTQADDHGVEAGSRRPGKSALAALTFIAPVFVIGFILIKFQPVSIH 123 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 + + IGK L Y E+ +LL +M GA++L + R Sbjct: 124 IPVEVP---LIEIGKGLLEDYPVAFELISVVLLAAMAGAVLLAFEQKGKKGR 172 >gi|260887653|ref|ZP_05898916.1| NADH dehydrogenase I, J subunit [Selenomonas sputigena ATCC 35185] gi|330838012|ref|YP_004412592.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas sputigena ATCC 35185] gi|260862669|gb|EEX77169.1| NADH dehydrogenase I, J subunit [Selenomonas sputigena ATCC 35185] gi|329745776|gb|AEB99132.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Selenomonas sputigena ATCC 35185] Length = 167 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + FYL + + + + VV + +++ L F+ A L+ LGA+F+ L++Y Sbjct: 5 LNTGAFYLLAAVTLAGALGVVLAKKLVHAALLLTVTFIGIACLYFQLGADFLGAAQLMIY 64 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 G V V + +M+ + + L ++ A V+ Sbjct: 65 AGGVAVLIVLGVMLTRHTPGEETSPDNARWFAAPVAAALFFAVVFSA----VYVTPFAEV 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 GN++E + ++ +Y E++ +LL +++GAIVL + Sbjct: 121 MEAPAGNSIEKLADLMLGEYVMTFELAAALLLAALVGAIVLAKEEGQ 167 >gi|292492180|ref|YP_003527619.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus halophilus Nc4] gi|291580775|gb|ADE15232.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus halophilus Nc4] Length = 167 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 75/138 (54%), Gaps = 2/138 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY+ +F+A++S+ +V+T NP++++ LI + ++ A +F LLGA F A + +++Y G Sbjct: 2 EITFYIAAFVAVVSTAMVITRLNPVHALLYLIVSLLSVALIFFLLGAPFAAALEVLIYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E + + + +++ +++ LS Sbjct: 62 AIMVLFVFVVMMLNLGKEAIAQENRWLNPQMWIGPGALSFILLIELIYLLEKESSLLSSA 121 Query: 125 VFKGNNVENIGKVLYTQY 142 + +G+ L+ Y Sbjct: 122 EMVEP--QQVGRALFGPY 137 >gi|198276156|ref|ZP_03208687.1| hypothetical protein BACPLE_02345 [Bacteroides plebeius DSM 17135] gi|198270968|gb|EDY95238.1| hypothetical protein BACPLE_02345 [Bacteroides plebeius DSM 17135] Length = 171 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 7/172 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + +Q + FY+ I S L VT + + L+F + ++ +LG F++ + L+ Sbjct: 3 ISLQEIVFYIVGACIIACSILAVTTGKILRAATYLLFVLLGTGAIYGILGYTFLSAVQLM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ D + + + ++ A L++ F+ Sbjct: 63 VYAGGIVVLYVFSILLTQSDKNMKYKINRAKLISVLLTIVIGAALVLFLVMTNGFALNLI 122 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168 + VENIG L Q+ P E+ +LL MIGAI++ + + Sbjct: 123 PQGVELP---VENIGHALIGTGKYQFVLPFEVVSVLLLACMIGAILIARKQK 171 >gi|163751854|ref|ZP_02159069.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Shewanella benthica KT99] gi|161328270|gb|EDP99432.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Shewanella benthica KT99] Length = 208 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 4/144 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + + +AIIS+ L V+ N ++++ L+ + A +F +LG+ F A + ++VY Sbjct: 1 MIDIIFCISAAVAIISALLTVSAHNVVHALLYLVTMMLAIALIFFMLGSPFAAALQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--- 119 GAV+V F+F+ MML ++ ++ + L+V + + G Sbjct: 61 AGAVMVLFVFVTMMLHQGERSLAAERQLFNPQVAKGPLILSALLVIELILLSLGSVGLHQ 120 Query: 120 -ELSRLVFKGNNVENIGKVLYTQY 142 L+ + V+ + L+ Y Sbjct: 121 EILTGSLPVDQTVKQLAIQLFGSY 144 >gi|330958151|gb|EGH58411.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas syringae pv. maculicola str. ES4326] Length = 169 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVITNTNPLHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + ++G + ++ A V A + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVQQE-RAWLKPGIWLGPVILGALLLAELLYVLFANPTGAAV 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|299140921|ref|ZP_07034059.1| NADH dehydrogenase I, subunit 6 [Prevotella oris C735] gi|298577887|gb|EFI49755.1| NADH dehydrogenase I, subunit 6 [Prevotella oris C735] Length = 168 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 8/167 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + + + + S+ + V + + S L+F AG++ LL F+ + VY G + Sbjct: 1 MFCILAVVILGSAIMCVLTKRIMRSATFLLFVLFGVAGIYFLLDYTFLGAAQISVYAGGI 60 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + ++F I ++ + +R + GIL + + + ++ + + Sbjct: 61 TMMYIFAIQLVSKR--TLQGLVERFKVSRVVNGILLSTVGLVTVGLVLIKNNFYNAAMQA 118 Query: 127 KGNNV--ENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 V E IG L QY P E LL +IG I++ + Sbjct: 119 TDTEVPMEQIGTALLGSDKYQYVLPFEFISLFLLACIIGGIMIARKE 165 >gi|212550779|ref|YP_002309096.1| NADH dehydrogenase I subunit J [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549017|dbj|BAG83685.1| NADH dehydrogenase I subunit J [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 173 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 4/170 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+ + F +++ S L V+ + + S L + AG +L L F+A + + V Sbjct: 4 VVNLIIFICLGIASLLFSILAVSSNSLLRSATYLFLVLLCTAGFYLFLNYHFLAAVQVSV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y G ++V F+F I + + EV + + S + + A F + Sbjct: 64 YAGGIVVLFIFAIFLTNDKSEVLIKKWWQRCTMSVLVILGGIATTAFALLKHRFIYINKS 123 Query: 122 SRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + ++ IGK L QY P EI +LL +IGAI++ + Sbjct: 124 MLEGDREIDMHLIGKALMGTGKYQYLLPFEILSLLLLACIIGAILIARKR 173 >gi|58219954|gb|AAW67495.1| NADH dehydrogenase subunit 6 [Fusarium oxysporum] gi|60499215|gb|AAX21838.1| NADH dehydrogenase subunit 6 [Fusarium oxysporum] Length = 223 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 41/200 (20%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + A++ L++ +NPI SV LI F N + +L+G F+ + L+VY+GAV + Sbjct: 23 IINITALLCGILIIINKNPIVSVIFLIGLFANISVYLILIGLTFIGLSYLIVYIGAVSIL 82 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112 FLFI+M+++I + + I ILA I + Sbjct: 83 FLFILMLINIRTSELQSNNRNSVSLGLLITILANFTIFQVLPYYMAILNNYSSKLNTILY 142 Query: 113 ------------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEI 148 ++F + + + + IG +LYT + + + Sbjct: 143 YLPWNKFSDILKYINRNLDITNANIMFVSSNSWDNNMAETGHTATIGHILYTSHNMWIFM 202 Query: 149 SGFILLLSMIGAIVLMLRHR 168 + FILLL+M+GAI++ ++ + Sbjct: 203 ASFILLLAMVGAIIITIKGK 222 >gi|332881560|ref|ZP_08449209.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680558|gb|EGJ53506.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 171 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 5/170 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + + + F + + M + S L VT + + +L+F AGL+ +LG ++ + L Sbjct: 4 ITLGQVVFGIVALMMAVCSVLAVTSGRILRAATALLFVLFGTAGLYFMLGYTYLGAVQLS 63 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF---FIGILAAELIVCASNFMVFSA 117 VY G ++V ++F I++ D + E + + + G ++ + F FS Sbjct: 64 VYAGGIVVLYVFSILLTRSDKNMNERIPRGRWFAAILTVLAGFGLTVFLLSSYGFARFSV 123 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + K N IG Y Q+ P E+ +LL MIGAI++ + Sbjct: 124 PPLVELDPVKVGNA-LIGMEKY-QFVLPFEVVSVLLLACMIGAIMIARKR 171 >gi|57505807|ref|ZP_00371732.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Campylobacter upsaliensis RM3195] gi|57015837|gb|EAL52626.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Campylobacter upsaliensis RM3195] Length = 172 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 2/166 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ L F +FS + + + V +N +YS+ +L V + + +L AEF+ I ++VY Sbjct: 2 IEQLSFIVFSVLILSFFLVAVLSKNMLYSLSALAGGMVFLSSFYFMLDAEFLGAIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+ + F +M D + E K + + IG+ L +F + S +L Sbjct: 62 SGAVLGIYSFAMMFFDASKDFKERLKFKKSFFAL-IGLSLVGLFASLMSFKLNSVNVDLP 120 Query: 123 RLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + ++ + + ++++Y E +LL++++ AIVL + Sbjct: 121 FIDTALFDLNKQLAFAIFSKYLLAFEFVAILLLIALVCAIVLTHKE 166 >gi|308275209|emb|CBX31806.1| hypothetical protein N47_N26310 [uncultured Desulfobacterium sp.] Length = 165 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 4/168 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + +FL V + ++++ L A G++L LG++FVAM+ L++Y Sbjct: 1 MAQAAFVLMIVFTLAGAFLAVIPKKIVHNILGLALAMFGITGVYLYLGSQFVAMMQLLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ + ++F IM+ E R + ++ M+ S + E Sbjct: 61 VGAICMTYIFAIMLSPP----LEKELPRRNKLKVITATAVSSIVFIVMVKMILSLKIEPI 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + +++ +G++L T+Y E+ +L +++IG+I++ R+ Sbjct: 117 ADATRDWSIKTLGQLLLTRYFLVFELISLLLAIAIIGSIMVASFVRKR 164 >gi|229591261|ref|YP_002873380.1| NADH dehydrogenase subunit J [Pseudomonas fluorescens SBW25] gi|312961694|ref|ZP_07776192.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Pseudomonas fluorescens WH6] gi|229363127|emb|CAY50148.1| NADH dehydrogenase I chain J [Pseudomonas fluorescens SBW25] gi|311283953|gb|EFQ62536.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Pseudomonas fluorescens WH6] Length = 167 Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ V+T NP++++ LI + + A F LGA F ++ ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVITNTNPVHALLYLIISLIAVAMTFFSLGAPFAGVLEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + +++ ++G + ++ V A + Sbjct: 62 AIMVLFVFVVMMLNL-GPASVAQERVWLKPGIWLGPVVLAALLLGELLYVLFAHQSGQAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 GHTTVDAKAVGISLFGPYLLVVE 143 >gi|104782529|ref|YP_609027.1| NADH dehydrogenase subunit J [Pseudomonas entomophila L48] gi|95111516|emb|CAK16236.1| NADH dehydrogenase I chain J [Pseudomonas entomophila L48] Length = 166 Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 73/143 (51%), Gaps = 1/143 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y G Sbjct: 2 EFAFYFASGVAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + G + ++ A L++ +++F + + Sbjct: 62 AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILAALLLLELLYVLFVTP-SGAAI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + +G L+ Y +E Sbjct: 121 SGTTVDAKAVGISLFGPYLLVVE 143 >gi|156598541|gb|ABU85528.1| NADH-plastoquinone oxidoreductase subunit 6 [Passiflora biflora] Length = 176 Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 10/153 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + I VV NPIYS FSL F V + ++L + FVA L++Y Sbjct: 7 IHDFILVFLELGLIFGGLGVVLFTNPIYSAFSLGFVLVCISLFYILSNSHFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V LF +M ++ +G+ +++ + V F+ + + Sbjct: 67 VGAINVLILFTVMFMN--GPEYSKGSNLWAVGNGVTSLVSTSIFVFLITFISDTTWYGII 124 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLE 147 + +N E IG L T + P E Sbjct: 125 WTTRENQILEQDLISNGEQIGIHLSTDFFLPFE 157 >gi|164421194|ref|YP_001648691.1| NADH dehydrogenase subunit 6 [Vaceletia sp. GW948] gi|158939052|gb|ABW83971.1| NADH dehydrogenase subunit 6 [Vaceletia sp. GW948] Length = 171 Score = 92.0 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 8/159 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L YL S ++S+ +V+ ++ +Y+V SL+ AF+N AGLF++LG EF+A + L+VYVG Sbjct: 2 NLICYLLSVGTMLSAVMVICSKSSVYAVLSLVSAFLNVAGLFVVLGVEFLAFLLLLVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V FLF++M+L ++ + + K + + F + Sbjct: 62 AIMVLFLFVLMILMLNEDEWQGEKSKFVVFVFLFFFFFLFCFKI--------GQVTFPNW 113 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + +G+ LY +Y ILLL+MIG + L Sbjct: 114 GVNERGIVLLGRGLYIEYGRGFIAGSLILLLAMIGVVEL 152 >gi|11466464|ref|NP_038167.1| NADH dehydrogenase subunit 6 [Chrysodidymus synuroideus] gi|7110461|gb|AAF36933.1|AF222718_7 NADH dehydrogenase subunit 6 [Chrysodidymus synuroideus] Length = 184 Score = 92.0 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F+ + I +S V NP++S+ L+ F++A+G+ GA+F+ ++ +++YVGA+ + Sbjct: 4 FFNLILIFASLFVFLSENPVHSILFLVLVFLSASGICFYFGADFLGLLFVIIYVGAIAIL 63 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 F+FIIMML+I I+ F+ F + +L + S + F Sbjct: 64 FIFIIMMLNIKIKNKALNYFYFFV--FIGFLAFLQLYLGLSKCFSNFFFFNSNFFFFDSL 121 Query: 130 NVE-NIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 ++E IG+ LY + + ISG ILL++MIGAIVL L + ++ + +Q Sbjct: 122 SIEFFIGQTLYNYFTFCFLISGIILLIAMIGAIVLTLNYTSKHFKKFLFRQQVRT 176 >gi|156598281|gb|ABU85402.1| NADH-plastoquinone oxidoreductase subunit 6 [Ginkgo biloba] Length = 176 Score = 92.0 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI--EV 83 N IYS SL V + L++LL A+FVA +++YVGA+ V +F +M+++ Sbjct: 30 TNIIYSALSLGSVLVCISLLYILLNADFVAAAQILIYVGAINVLIVFAVMLMNNQKYPNS 89 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASN--FMVFSAEGELSRLVFKG--NNVENIGKVLY 139 A P + S L LI N + V S EL++ + + NN++ IG L Sbjct: 90 APPWTVGDGITSVVCMSLFCSLITIILNTSWSVISLTTELNQFLEQDLTNNIQRIGVHLS 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLR 166 T + P E+ ILL++++GAI + R Sbjct: 150 TDFILPFELISIILLITLVGAITMARR 176 >gi|291303391|ref|YP_003514669.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Stackebrandtia nassauensis DSM 44728] gi|290572611|gb|ADD45576.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Stackebrandtia nassauensis DSM 44728] Length = 173 Score = 92.0 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F + + ++ VVT + + + L+ A A FL+L AE VA + ++ Sbjct: 1 MTVTDVLLVAFGLLTLGAAVRVVTTAHLVRAGLWLVVALGGLAACFLVLTAELVAWVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGAV+V LF +M+ I + + + G+ L V ++ ++ Sbjct: 61 IYVGAVVVLLLFAVMLTRAPIGASPEMDRARWPGAIVGAAAGLGLSVLLADAFRWT---S 117 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147 + + + +G ++ + P E Sbjct: 118 IDAQAVEPGTAKRLGTEIFGNWVLPFE 144 >gi|296120539|ref|YP_003628317.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces limnophilus DSM 3776] gi|296012879|gb|ADG66118.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Planctomyces limnophilus DSM 3776] Length = 290 Score = 92.0 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 83/233 (35%), Gaps = 54/233 (23%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F +F+ + + +V +N + F L+ + +AAGLF LL A+F+A L+ Sbjct: 1 MTVLQFLFAVFASTTCLGAVMVALTQNIVRMAFWLMVSVASAAGLFFLLHADFLAAAQLL 60 Query: 61 VYVGAVIVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------M 113 VY+G +V +F +M+ + P L + L L+ + Sbjct: 61 VYLGGTVVILVFGVMLTAGGRTKSLSPTGGETILAAALALSLIMLLLFTVGSVDWERLNT 120 Query: 114 VFSAEGELSRLVFKGNNVE---------------------------NIG----------- 135 + A+ L V N+ E +G Sbjct: 121 LAKADQILPSAVQPENHTEPQLTESSPTGDERSPVLGAGRNGDTGHALGSAMIGFRPQWN 180 Query: 136 ----KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 VL T Y P EI LL+ +IGA L KRQ S + ++ Sbjct: 181 RENQLVLGTGYLLPFEIISVHLLVVLIGAAYLAR-----AKRQLPSSRRSTDA 228 >gi|322506936|gb|ADX02390.1| nuoJ [Acinetobacter baumannii 1656-2] gi|323516803|gb|ADX91184.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Acinetobacter baumannii TCDC-AB0715] Length = 163 Score = 92.0 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 MAI+S+ VVT NP++++ SLI + + AG+F+++GA F + ++VY GA++V F+F+ Sbjct: 1 MAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIMVLFVFV 60 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS-RLVFKGNNVE 132 +MML++ E +K ++ L + L+ +M+ +S L + + Sbjct: 61 VMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGAQVIGPK 120 Query: 133 NIGKVLYTQYAYPLE 147 +G+ L+T Y +E Sbjct: 121 VVGQALFTHYLLLVE 135 >gi|167034695|ref|YP_001669926.1| NADH dehydrogenase subunit J [Pseudomonas putida GB-1] gi|166861183|gb|ABY99590.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudomonas putida GB-1] Length = 166 Score = 92.0 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 A++V F+F++MML++ + K G I + F+ S G Sbjct: 62 AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILGTLLLAELLYVLFVTPSGAGIS 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147 V + +G L+ Y +E Sbjct: 122 GTTVGP----KEVGISLFGPYLLVVE 143 >gi|320354154|ref|YP_004195493.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] gi|320122656|gb|ADW18202.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfobulbus propionicus DSM 2032] Length = 158 Score = 91.6 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 1/154 (0%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 +A++ + +V R+P+ S + ++ AGL+ LL A+ + + L+VY GA++ +FI Sbjct: 2 LAVLGAAGLVLFRHPMNGAMSFVVTLISLAGLYALLSAKLIFALQLIVYAGAIMSLIVFI 61 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133 IM L+I + P+++ L I+ + + + + + V+ Sbjct: 62 IMFLNIQPDDL-PKEETKLLYIIGGSIIVLPVGLFLVKIVKSIPMSSAALIGNDFGGVKQ 120 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +G +L+ + P EI +LL+S+IGA+VL + Sbjct: 121 VGLLLFKDWLVPFEIVSILLLVSLIGAVVLAGKR 154 >gi|320009162|gb|ADW04012.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 91.6 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 2/143 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ + VT + +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 19 EIAFLLVGLATFGAAVVTVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVG 78 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + AA +V + +L Sbjct: 79 SVVVLLLFGLMLTRAPIGRSPDADSGNRWMALGASVPAAGALVWVVVDAFRTTWIDLDGP 138 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + G+ L+ + P E Sbjct: 139 AQ--GSTKASGEFLFRNWVLPFE 159 >gi|302345404|ref|YP_003813757.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella melaninogenica ATCC 25845] gi|302149226|gb|ADK95488.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella melaninogenica ATCC 25845] Length = 179 Score = 91.6 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 7/172 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ V+ + + +V +L+F AGL+ LL F+ + +Y G Sbjct: 5 IMFAVLAVIILASAVFCVSTKRIMRAVTALLFVLFGVAGLYFLLDYTFLGAAQISIYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 + + ++F I ++ + KR FL +F + +I+ V Sbjct: 65 ITMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAFIALVGFGTVILVLLKNEVLRHTVVNG 124 Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + +E IG+ L T Y P E LL +IG +V++ +++ Sbjct: 125 DSLSNEVTMETIGRNLMTANKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 176 >gi|24213588|ref|NP_711069.1| NADH dehydrogenase (ubiquinone) chain J [Leptospira interrogans serovar Lai str. 56601] gi|24194380|gb|AAN48087.1| NADH dehydrogenase (ubiquinone) chain J [Leptospira interrogans serovar Lai str. 56601] Length = 233 Score = 91.6 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 52/215 (24%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q L F+LF+ + I+SS V+ NPI + L+ +F + A ++ ++ A F+A + L+VY Sbjct: 8 QLLLFFLFASVMILSSLGVIFHPNPITAAVLLVLSFFSLAAIYAVMNAIFIATMQLLVYA 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122 GA++V +F++M+L + + + L L V + E + Sbjct: 68 GAIMVLVVFVLMLLSLRDDAPRFFIFEKPIKKLLYLGLVMFLGVLLITAVQDGIPSETTV 127 Query: 123 ---------------------------------------------------RLVFKGNNV 131 +++ N Sbjct: 128 PIGYAQNKDGKFVGYSFQISKNIKQTNTKSTLETPKTTSENQNHVHEKDTDQIILTSGNT 187 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +G ++ +Y P E+ +LL +++GA+VL + Sbjct: 188 AAVGSAMFLRYLLPFELISILLLAAVLGAVVLGKK 222 >gi|290967673|ref|YP_003495101.1| NADH dehydrogenase subunit 6 [Trametes cingulata] gi|289832517|gb|ADD21053.1| NADH dehydrogenase subunit 6 [Trametes cingulata] Length = 203 Score = 91.6 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 94/203 (46%), Gaps = 34/203 (16%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M++ L +F A+ SS LV+T +NP+ +V LI FVNAAG +LLG F+ + ++VY Sbjct: 1 MKNFLIELLAFAALFSSVLVITSKNPVIAVIFLISVFVNAAGYLILLGIGFIGISYIIVY 60 Query: 63 VGAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VGA+ V FLF+IMM++I DI + + + IG L I F + Sbjct: 61 VGAIAVLFLFVIMMINIKLTDILETGSQYTKNLPLALSIGSLFIYEIYTIIPFSFNNVSN 120 Query: 120 ELSRLVFKGN-------------------------------NVENIGKVLYTQYAYPLEI 148 + L+FK N +E IG+ LYT A L I Sbjct: 121 TILDLLFKFNGFILNYEISINDWVNNAVNPVIADTALTPFLQIEAIGQGLYTYGASWLII 180 Query: 149 SGFILLLSMIGAIVLMLRHRRDI 171 + ILLL+M+ I + R + Sbjct: 181 TSVILLLAMVAPIFISKTRRNNS 203 >gi|300723698|ref|YP_003713005.1| NADH dehydrogenase I subunit J [Xenorhabdus nematophila ATCC 19061] gi|297630222|emb|CBJ90873.1| NADH dehydrogenase I chain J [Xenorhabdus nematophila ATCC 19061] Length = 175 Score = 91.6 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 71/139 (51%), Gaps = 2/139 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFTFYVAGLVAILATLRVITHTNPVHALLYLIISLLALSVVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E + ++ + + +++ + + + ++ Sbjct: 62 AIMVLFVFVVMMLNLGKSVVEQERLWLQPRAWIGPSILSIVLLIVLAYAISTLPPV--KI 119 Query: 125 VFKGNNVENIGKVLYTQYA 143 + + +G L+ Y Sbjct: 120 AGEVVSAREVGISLFGPYV 138 >gi|313498023|gb|ADR59389.1| NADH dehydrogenase subunit J [Pseudomonas putida BIRD-1] Length = 166 Score = 91.2 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 A++V F+F++MML++ + K G I + F+ S G Sbjct: 62 AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILGALLLAELLYVLFVTPSGAGIS 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147 V + +G L+ Y +E Sbjct: 122 GTTVGP----KEVGISLFGPYLLVVE 143 >gi|170721049|ref|YP_001748737.1| NADH dehydrogenase subunit J [Pseudomonas putida W619] gi|169759052|gb|ACA72368.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pseudomonas putida W619] Length = 166 Score = 91.2 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 7/146 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 A++V F+F++MML++ + K G I L + F+ S G Sbjct: 62 AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILGTLLLLELLYVLFVTPSGAGIS 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147 V + +G L+ Y +E Sbjct: 122 GTTVGP----KEVGISLFGPYLLVVE 143 >gi|239980100|ref|ZP_04702624.1| putative NADH dehydrogenase chain J [Streptomyces albus J1074] gi|291451954|ref|ZP_06591344.1| predicted protein [Streptomyces albus J1074] gi|291354903|gb|EFE81805.1| predicted protein [Streptomyces albus J1074] Length = 216 Score = 91.2 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 2/162 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + + ++ L VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 31 EIVFLLVGLVTVGAAVLTVTTRQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVG 90 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + A +V + +L + Sbjct: 91 SVVVLLLFGLMLTRAPIGRSPDTDSGNRPVALAVALATAATLVWVVVDAFRTTWIDLDQA 150 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 V + E G L++ + P E +LL +++GAIVL R Sbjct: 151 VQ--GSTEVTGAALFSSWVLPFEALSVLLLAALVGAIVLSRR 190 >gi|290475909|ref|YP_003468804.1| NADH dehydrogenase I subunit J [Xenorhabdus bovienii SS-2004] gi|289175237|emb|CBJ82040.1| NADH dehydrogenase I chain J [Xenorhabdus bovienii SS-2004] Length = 175 Score = 91.2 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 2/139 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T N ++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFTFYVAGLVAILATLRVITHTNSVHALLYLITSLLALSVVFFSLGAYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V E + L + + A +++ F + S + + Sbjct: 62 AIMVLFVFVVMMLNLGKSVVEQERAWLQLRVWIGPAILAAVLLIVLIFAISSLP--TAEI 119 Query: 125 VFKGNNVENIGKVLYTQYA 143 + + + +G L+ Y Sbjct: 120 SGEVVSAKEVGISLFGPYV 138 >gi|288803380|ref|ZP_06408813.1| NADH dehydrogenase I, subunit 6 [Prevotella melaninogenica D18] gi|288334200|gb|EFC72642.1| NADH dehydrogenase I, subunit 6 [Prevotella melaninogenica D18] Length = 174 Score = 91.2 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 7/171 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + + + + S+ V+ + + + +L+F AGL+ LL F+ + +Y G + Sbjct: 1 MFAVLAVIILASAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAAQISIYAGGI 60 Query: 67 IVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + ++F I ++ + KR FL +F + +I+ V Sbjct: 61 TMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAFIALVGFGTVILVLLKNQVLRHTVVNGD 120 Query: 124 LVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + +E IG+ L T Y P E LL +IG +V++ +++ Sbjct: 121 SLSNEVTMETIGRNLMTANKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 171 >gi|300727162|ref|ZP_07060580.1| NADH dehydrogenase I, subunit 6 [Prevotella bryantii B14] gi|299775548|gb|EFI72140.1| NADH dehydrogenase I, subunit 6 [Prevotella bryantii B14] Length = 173 Score = 91.2 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 8/171 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ + V + + + L+F AG++ LL F+ L +Y G Sbjct: 5 VVFCILAVVILGSAIMCVMTKRIMRAATFLLFVLFGIAGIYFLLDYTFLGAAQLSIYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE--LSR 123 + + ++F I ++ + +G GIL A L + ++ + ++ Sbjct: 65 ITMMYIFAIQLVSKRTLQGLVEQIKG--SRMINGILVAVLGIATVGVVLLKNKFIDCAAQ 122 Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + K +++ IG L QY P E LL +IG I++ + + Sbjct: 123 MADKEVSMDVIGNHLLGSEKYQYVLPFEFISVFLLACIIGGIMIARKEDKK 173 >gi|297159544|gb|ADI09256.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces bingchenggensis BCW-1] Length = 238 Score = 91.2 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 3/143 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + + + + + VT + +++ L+ A FLLL AEF+A + +++YVG Sbjct: 21 EITFLLVAVVTLGGAVVTVTTKQLVHAALWLVVTLGGLAVEFLLLTAEFIAWVQVLIYVG 80 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + +A +V + +L + Sbjct: 81 SVVVLILFGLMLTKAPIGRSPDADSGNRPAALAVAVASAAALVWVVVDAFRATWIDLGEV 140 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + G L+ + P E Sbjct: 141 Q---GSTKVTGVSLFRHWVLPFE 160 >gi|45658582|ref|YP_002668.1| NADH dehydrogenase I subunit J [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601826|gb|AAS71305.1| NADH dehydrogenase I J subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 233 Score = 91.2 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 52/215 (24%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q L F+LF+ + I+SS V+ NPI + L+ +F + A ++ ++ A F+A + L+VY Sbjct: 8 QLLLFFLFASVMILSSLGVIFHPNPITAAVLLVLSFFSLAAIYAVMNAIFIATMQLLVYA 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122 GA++V +F++M+L + + + L L V + E + Sbjct: 68 GAIMVLVVFVLMLLSLRDDAPRFFIFEKPIKKLLYLGLVMFLGVLLITAVQDGIPSETTV 127 Query: 123 ---------------------------------------------------RLVFKGNNV 131 +++ N Sbjct: 128 PIGYAQNKDGKFVGYSFQISKNIKQTNTKSTLETPKTTSENQNHVHEKDTDQIILTSGNT 187 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +G ++ +Y P E+ +LL +++GA+VL + Sbjct: 188 AAVGSAMFLRYLLPFELISVLLLAAVLGAVVLGKK 222 >gi|319789716|ref|YP_004151349.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio ammonificans HB-1] gi|317114218|gb|ADU96708.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio ammonificans HB-1] Length = 159 Score = 90.9 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F+YLF +A++ + + VT +N I +L+ FV GL+ +GAEF+ ++ ++VY Sbjct: 1 MAEFFYYLFGVIAVVFAAVAVTAKNVIRGGVALLGTFVALGGLYFSVGAEFIGIVQVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+IV +LF +M LD+ EP + F+ + +IV + FS G + Sbjct: 61 GGAIIVLYLFALMTLDLKRMEGEPVRLFSVAAGGFLSLALVAIIV----YGGFSFFGSVH 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 V + + + L+ ++ P E+ +LL++ IGA+ Sbjct: 117 PAV---STAKGLAGPLFYRFLLPFEVVSVLLLVATIGAV 152 >gi|284009328|emb|CBA76494.1| NADH-quinone oxidoreductase chain J [Arsenophonus nasoniae] Length = 177 Score = 90.9 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 76/143 (53%), Gaps = 2/143 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ +AI+++ V+T NP++++ LI + + A +F +G+ F + ++VY G Sbjct: 2 EFTFYVAGLVAILATLRVITHTNPVHALLYLIVSLLVLAIVFFAVGSYFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ V + + ++ + + +++ + + + + S++ Sbjct: 62 AIMVLFVFVVMMLNLGKSVVDQERVWLQPKAWIGPAILSAVLLGVIVYAIVAIKH--SQI 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + + +G L+ Y +E Sbjct: 120 KGEMISAKQVGISLFGPYVLAVE 142 >gi|325277469|ref|ZP_08143075.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas sp. TJI-51] gi|324097398|gb|EGB95638.1| NADH:ubiquinone oxidoreductase subunit J [Pseudomonas sp. TJI-51] Length = 166 Score = 90.9 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFSLGAPFAGALEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 A++V F+F++MML++ + K G I + F+ S G Sbjct: 62 AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILGALLLAELLYVLFVTPSGAGIS 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147 V + +G L+ Y +E Sbjct: 122 GTTVGP----KAVGVSLFGPYLLVVE 143 >gi|26990821|ref|NP_746246.1| NADH dehydrogenase subunit J [Pseudomonas putida KT2440] gi|148546976|ref|YP_001267078.1| NADH dehydrogenase subunit J [Pseudomonas putida F1] gi|24985828|gb|AAN69710.1|AE016607_4 NADH dehydrogenase I, J subunit [Pseudomonas putida KT2440] gi|148511034|gb|ABQ77894.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Pseudomonas putida F1] Length = 166 Score = 90.9 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A++S+ VVT NP++++ LI + ++ A +F LGA F + ++ Y G Sbjct: 2 EFAFYFASGIAVVSTLRVVTGTNPVHALLYLIISLISVAMIFFALGAPFAGALEVIAYAG 61 Query: 65 AVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 A++V F+F++MML++ + K G I + F+ S G Sbjct: 62 AIMVLFVFVVMMLNLGPASVAQERGWLKPGIWAGPVILGTLLLAELLYVLFVAPSGAGIS 121 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLE 147 V + +G L+ Y +E Sbjct: 122 GTTVGP----KAVGISLFGPYLLVVE 143 >gi|239905973|ref|YP_002952712.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio magneticus RS-1] gi|239795837|dbj|BAH74826.1| putative NADH-quinone oxidoreductase chain J [Desulfovibrio magneticus RS-1] Length = 174 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 6/172 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FYLF+ + + ++ L T RNP+++V + F++ + +LGA +++T+V Sbjct: 1 MTPLGALFYLFAALGLGAAVLTATRRNPVHAVCCAVAVFLSVGAMLAVLGAPLPSVLTVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V FLF+IM+L + G F + A + A ++ + Sbjct: 61 VYAGAIMVLFLFVIMLLGLPAGDGTL-----PPGRFLVPATLAAATLVALFALIGADPTA 115 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + L +G +L+ +Y +E +L ++ A++L+ R + K Sbjct: 116 KTLLPAAMAGPAAVGTILFDKYWLAVEAVSILLFAAL-AAVMLLGRGKTGRK 166 >gi|226348833|gb|ACO50737.1| NADH dehydrogenase subunit 6 [Micromonas pusilla CCMP1545] Length = 263 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 40/104 (38%), Positives = 62/104 (59%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +F+F+A+++ F V+ +NP+YSV LI F N +G+ +LLG +F AM+ LVVYVGA+ Sbjct: 4 LFTIFAFLALVAGFCVIKAKNPVYSVLFLILVFCNVSGILVLLGLDFFAMVFLVVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 V FLF++MML++ + R G+L I+ Sbjct: 64 AVLFLFVVMMLNVKLAEINDNILRYLPVGGLFGLLFLGQILLVM 107 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%) Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180 + + V +G+V+YT Y ++ ILL++MIGAIVL + +KRQ++ Q Sbjct: 190 WPLFSEEISPVAALGQVVYTYYVVFFLVASLILLVAMIGAIVLTMHKGVFVKRQEVWAQN 249 Query: 181 ESNPDNSIVMVK 192 + ++ +K Sbjct: 250 LVDFSKTVSKIK 261 >gi|149374619|ref|ZP_01892393.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] gi|149361322|gb|EDM49772.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] Length = 180 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 70/143 (48%), Gaps = 2/143 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L FY+ +A++++ V+T +P+++V LI + + A +F LGA F + ++VY G Sbjct: 2 ELAFYVCGLVAVLATIGVITGTSPVHAVVYLIVSLIAVALVFFALGAPFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + + R +L L+ + + G++ + Sbjct: 62 AIMVLFVFVVMMLNLRSDAEQEPSWRNPRHWVGPSLLTLLLLGALAVLIGQGGMGQM--I 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + + L+ + +E Sbjct: 120 DGELLTARAVALTLFGPWLIVVE 142 >gi|82702150|ref|YP_411716.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosospira multiformis ATCC 25196] gi|82410215|gb|ABB74324.1| NADH dehydrogenase subunit J [Nitrosospira multiformis ATCC 25196] Length = 188 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 78/148 (52%), Gaps = 9/148 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 FYL +A+ ++ +VVT + ++++ LI + + A +F +LGA F A + +++Y GAV+ Sbjct: 5 FYLSGAVAVAATLMVVTRASAVHALLYLIVSLLAVAIIFFVLGAPFAAALEVIIYAGAVM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML++ A ++ G + + + L++ +++ ++ + V+ Sbjct: 65 VLFVFVIMMLNLGKAAAVKEREWLSPGMWVGPSILSALLLAELIYILVQNIQDV-QGVYD 123 Query: 128 GNNV--------ENIGKVLYTQYAYPLE 147 G + + IG L+ Y +E Sbjct: 124 GTAISTRAVVDSKEIGIALFGPYLLGVE 151 >gi|297201680|ref|ZP_06919077.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sviceus ATCC 29083] gi|197710947|gb|EDY54981.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sviceus ATCC 29083] Length = 248 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 2/143 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ + VT + +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 17 EIAFLLVGLVTFGAAIVTVTTKQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 76 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + AA +V + +L Sbjct: 77 SVVVLLLFGLMLTRAPIGRSPDADSGNRWAALVVALAAAAALVWVVADAFRTTWIDLDGP 136 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + E G L+ + P E Sbjct: 137 AA--GSTEATGASLFQNWVLPFE 157 >gi|332826696|gb|EGJ99518.1| hypothetical protein HMPREF9455_04114 [Dysgonomonas gadei ATCC BAA-286] Length = 167 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 7/156 (4%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 + S+ + VT + I S L+F + AGL+LLL F+ + + VY G V+V F+F I+ Sbjct: 15 VFSTIMAVTTQKIIRSATFLLFVLLGTAGLYLLLDYHFLMAVQIAVYAGGVMVLFIFAIL 74 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135 + K F + A + + + ++ + + +++IG Sbjct: 75 LTHEPGVDVRFEKPGRM---FVAAVTALAGLGICGHIIFYNVNKFYTYVTQSELQMQDIG 131 Query: 136 KVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + QY P E +LL +IG I++ + Sbjct: 132 MAMMGTDKYQYLLPFEAISVLLLACIIGGIMIARKR 167 >gi|50261311|ref|YP_052920.1| NADH dehydrogenase subunit 6 [Saprolegnia ferax] gi|48237624|gb|AAT40673.1| NADH dehydrogenase subunit 6 [Saprolegnia ferax] Length = 233 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 54/90 (60%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + FF+LFS +A+ S+ V+ +N +YSVF LI F N GL L+ EF+A++ +++YV Sbjct: 7 EVFFFFLFSSIALTSAIFVIYSKNTVYSVFFLILVFTNMTGLLLVAEVEFLAIMLIIIYV 66 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 GA+ V FLF++MMLDI Sbjct: 67 GAITVLFLFVVMMLDIKKIETNNNNYGYLP 96 >gi|29831429|ref|NP_826063.1| NADH dehydrogenase I chain J [Streptomyces avermitilis MA-4680] gi|29608544|dbj|BAC72598.1| putative NADH dehydrogenase I chain J (complex I) [Streptomyces avermitilis MA-4680] Length = 207 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ + VT + +++ L+ A +LLL AEF+A + +++YVG Sbjct: 26 EIAFLLVGLVTFGAAIVTVTTKQLVHAALWLVATLGGLAVEYLLLTAEFIAWVQVLIYVG 85 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + +A +V + +L+ Sbjct: 86 SVVVLLLFGLMLTKAPIGRSPDADSGNRWAALTVAVASAATLVWVVVDAFRTTWLDLNGA 145 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 V G L+ + P E +LL +++GAIVL + + D Sbjct: 146 AAGSTAVT--GASLFQNWVLPFEALSVLLLAALVGAIVLSRKAKAD 189 >gi|189459780|ref|ZP_03008565.1| hypothetical protein BACCOP_00409 [Bacteroides coprocola DSM 17136] gi|189433509|gb|EDV02494.1| hypothetical protein BACCOP_00409 [Bacteroides coprocola DSM 17136] Length = 171 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 3/170 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + +Q + FY+ + + S L VT + + L+F ++ +LG F+ + L+ Sbjct: 3 ITLQEIVFYVVAAAIAVFSVLAVTTGKILRAATYLLFVLFGTGAIYGVLGYTFLGAVQLM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAE 118 VY G ++V ++F I++ D + P + + ++ A L+ + +N + Sbjct: 63 VYAGGIVVLYVFSILLTQSDKNMKYPINRGKLISVLLTTLIGAALVLFLIFTNGFALNII 122 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + L + + IG Y Q+ P E+ +LL MIGAI++ + + Sbjct: 123 PQGVELPAREIGLALIGTEKY-QFVLPFEVVSILLLACMIGAILIARKQK 171 >gi|330997241|ref|ZP_08321094.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paraprevotella xylaniphila YIT 11841] gi|329571036|gb|EGG52743.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Paraprevotella xylaniphila YIT 11841] Length = 171 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 5/170 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + + + F + S M + S L VT + + +L+F AGL+ +LG ++ + L Sbjct: 4 ITLGQVVFGVVSLMMAVCSVLAVTSGRILRAATALLFVLFGTAGLYFMLGYTYLGAVQLS 63 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS---FFIGILAAELIVCASNFMVFSA 117 VY G ++V ++F I++ D + E + + + G ++ + F FS Sbjct: 64 VYAGGIVVLYVFSILLTRSDKNMNERIPRGRWFAAMLTVLAGFGLTVFLLSSYGFARFSV 123 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + K N +G Y Q+ P E+ +LL MIGAI++ + Sbjct: 124 PPLVELDPVKVGNA-LVGMGKY-QFVLPFEVVSVLLLACMIGAIMIARKR 171 >gi|163744628|ref|ZP_02151988.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Oceanibulbus indolifex HEL-45] gi|161381446|gb|EDQ05855.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Oceanibulbus indolifex HEL-45] Length = 279 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 4/167 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+ S +AI S + V V + I + F+L+ +F+ + LL+ A+++ + T+ + Sbjct: 1 MTDIAFYILSAIAIWSGWRVFRVDSMIRATFALMVSFICVGAIALLMSADYIGVATVFMM 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 ++V LF++M + + + + S GI+A V + + + Sbjct: 61 AVEMMVMGLFMVMFMMNPAGLNPMQMVHQYRLSIGAGIVA----FIGLTVAVLATDLPHN 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 L + + ++G L E +G LL +M+GA++L R R Sbjct: 117 PLPAGRDTMRDLGINLLGSSMLIFETAGVTLLATMLGAVILSSRRGR 163 >gi|224026047|ref|ZP_03644413.1| hypothetical protein BACCOPRO_02800 [Bacteroides coprophilus DSM 18228] gi|224019283|gb|EEF77281.1| hypothetical protein BACCOPRO_02800 [Bacteroides coprophilus DSM 18228] Length = 171 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 7/172 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + +Q + FY+ + + S L VT + + L+F ++ +LG F+ + L+ Sbjct: 3 ITLQEIVFYVVAAAIAVCSVLAVTTGKILRAATYLLFVLFGTGAIYGILGYTFLGAVQLM 62 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY G ++V ++F I++ D ++ + + ++ A L++ F+ Sbjct: 63 VYAGGIVVLYVFSILLTQSDKDMKYRMNRAKLISVLLTTLVGAALVLFLVLTNGFALNMI 122 Query: 121 LSRLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHR 168 + V IG L Q+ P E+ +LL MIG I++ + + Sbjct: 123 PQGVELP---VREIGLSLTGTGKYQFILPFEVVSVLLLACMIGGILIARKDK 171 >gi|304382885|ref|ZP_07365368.1| NADH dehydrogenase I [Prevotella marshii DSM 16973] gi|304336070|gb|EFM02317.1| NADH dehydrogenase I [Prevotella marshii DSM 16973] Length = 174 Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 67/169 (39%), Gaps = 4/169 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + +IS+ V + + + L+F AG++ LL F+ L +Y G Sbjct: 5 IIFGILAAIILISAVFCVMTKRIMRAATFLLFVLFGIAGIYFLLDYTFLGAAQLSIYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + + ++F I ++ +G I + A L+ + + + + Sbjct: 65 ITMIYIFAIQLVSKRTLQGLTEHVKGSQLVLGILLSLAGLVTVVAVLLKNEFINKAMEMA 124 Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 ++ IG L QY P E LL +IG +++ + + + Sbjct: 125 DSEVPMKTIGTALMGSEKYQYVLPFEFISIFLLACIIGGLMVSHKKKEE 173 >gi|288926083|ref|ZP_06420011.1| NADH dehydrogenase I, subunit 6 [Prevotella buccae D17] gi|315608356|ref|ZP_07883345.1| NADH dehydrogenase I subunit 6 [Prevotella buccae ATCC 33574] gi|288337123|gb|EFC75481.1| NADH dehydrogenase I, subunit 6 [Prevotella buccae D17] gi|315249986|gb|EFU29986.1| NADH dehydrogenase I subunit 6 [Prevotella buccae ATCC 33574] Length = 173 Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 6/167 (3%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ + V + + + L+F AG++ LL F+ + VY G Sbjct: 5 VMFCILAAVILGSAVMCVMTKRIMRAATFLLFVLFGVAGIYFLLDYTFLGTAQIAVYAGG 64 Query: 66 VIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAEGE 120 + + ++F I ++ V E K LG + ++ +V F+ F+A+ Sbjct: 65 ITMVYIFAIQLVSKQTLQGVVERFKGSRVLGGAVVSLVGLATVVVVLLKNRFIDFAAQSA 124 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + +G Y QY P E LL +IG I++ + Sbjct: 125 VGEIPMNTIGTALLGSEKY-QYVLPFEFISVFLLACIIGGIMIARKE 170 >gi|297192747|ref|ZP_06910145.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces pristinaespiralis ATCC 25486] gi|197721066|gb|EDY64974.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces pristinaespiralis ATCC 25486] Length = 214 Score = 90.1 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 18 EIAFLLVGVVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 77 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + ++AA +V + +L Sbjct: 78 SVVVLLLFGLMLTKAPIGRSPDADSGNRWVALAVAVVAAVSLVWVVVDAFRTTWIDLDGP 137 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + G++L+ + P E +LL ++IGAIVL + + Sbjct: 138 AQ--GSTKVSGEILFRHWVLPFEALSVLLLAALIGAIVLSRKDGEE 181 >gi|48478734|ref|YP_024341.1| NADH dehydrogenase subunit 6 [Saccharum hybrid cultivar SP-80-3280] gi|50812597|ref|YP_054698.1| NADH dehydrogenase subunit 6 [Saccharum officinarum] gi|118614545|ref|YP_899460.1| NADH-plastoquinone oxidoreductase subunit 6 [Sorghum bicolor] gi|75255217|sp|Q6ENP4|NU6C_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|75261504|sp|Q6L3D7|NU6C_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|221272344|sp|A1E9X7|NU6C_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|48478636|gb|AAT44656.1| NADH dehydrogenase subunit 6 [Saccharum hybrid cultivar SP80-3280] gi|49659581|dbj|BAD27362.1| NADH dehydrogenase ND6 subunit [Saccharum hybrid cultivar NCo 310] gi|118201179|gb|ABK79549.1| NADH-plastoquinone oxidoreductase subunit 6 [Sorghum bicolor] Length = 176 Score = 89.3 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 K +G F +L + + ++ + NNV+ IG Sbjct: 90 --KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147 Query: 138 LYTQYAYPLE 147 L T + P E Sbjct: 148 LATDFYLPFE 157 >gi|11467258|ref|NP_043090.1| NADH dehydrogenase subunit 6 [Zea mays] gi|1171828|sp|P46621|NU6C_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|902287|emb|CAA60351.1| NADH dehydrogenase ND6 [Zea mays] Length = 176 Score = 89.3 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 K +G F +L + + ++ + NNV+ IG Sbjct: 90 --KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147 Query: 138 LYTQYAYPLE 147 L T + P E Sbjct: 148 LATDFYLPFE 157 >gi|282877796|ref|ZP_06286609.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella buccalis ATCC 35310] gi|281300112|gb|EFA92468.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella buccalis ATCC 35310] Length = 173 Score = 89.3 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 65/166 (39%), Gaps = 4/166 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ + V + + + LIF AG++ LLG ++ + +Y G Sbjct: 5 IMFCILAVVILGSAIMCVLTKRIMRAATFLIFVLFGVAGIYFLLGYTYLGAAQIAIYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + + ++F I ++ +G + L + + +++ Sbjct: 65 ITILYIFAIQLVSKRTLQGLVEHLKGSRVIQGALLSLIGLATVIGVLVKNQFIHQAAQVA 124 Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + IG+ L QY P E+ LL +IG +++ + Sbjct: 125 DAEVPMNVIGQALVGSEKYQYVLPFELISVFLLACIIGGLLIARKE 170 >gi|312129478|ref|YP_003996818.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leadbetterella byssophila DSM 17132] gi|311906024|gb|ADQ16465.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leadbetterella byssophila DSM 17132] Length = 159 Score = 88.9 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 7/166 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F+LF + I V+ +N +Y+ + L+ F+ AG+F+ GAEF+A +++Y Sbjct: 1 MIDLVFWLFCLLTIGGGVYVLLSKNVLYAAYGLLSTFLGVAGMFVFAGAEFMAAAQIMIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VG +++ +F IM+ + + G +LAA IV + S E Sbjct: 61 VGGIMILLIFGIMLSTRRKYLVVEDAAQNR-GILVAVLLAAVWIVLIIKLRLLSGE---- 115 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +++ +G L T + LE+ G ILL++++GA + R Sbjct: 116 --PVELISIKKVGLALMTSHVLILELVGVILLMALVGATYIARDDR 159 >gi|326402931|ref|YP_004283012.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum AIU301] gi|325049792|dbj|BAJ80130.1| NADH-quinone oxidoreductase subunit J [Acidiphilium multivorum AIU301] Length = 166 Score = 88.9 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 2/158 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + +A++++ +++T + ++ + L + + A +F +LGA F A + +++Y GA++ Sbjct: 5 FVISAIIAVVATAMMITRPSAVHGLLYLTVSLLAVALVFFVLGAPFAAALEVIIYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML+I A ++ + A L+ + S G L Sbjct: 65 VLFVFVIMMLNIGEAAARLESSWLHPATWVGPSILALLLAIELGAVAVS--GGLPHPATS 122 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + +G L Y +E++ F+LL ++ A L Sbjct: 123 VISAHAVGVALVGPYMLAVELASFLLLAGLVAAFHLGR 160 >gi|328884360|emb|CCA57599.1| NADH-ubiquinone oxidoreductase chain J [Streptomyces venezuelae ATCC 10712] Length = 182 Score = 88.9 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 2/166 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 17 EIAFLLVGLVTLGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 76 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + R + + + AA +V + +L Sbjct: 77 SVVVLLLFGLMLTKAPIGRSPDADSRNKPVAVAVALAAAAALVWVVVDAFRTTWIDLDGA 136 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 V + + G++L+ + P E +LL +++GAIVL + + Sbjct: 137 VQ--GSTKVSGEILFRHWVLPFEALSVLLLAALVGAIVLSRKKKEG 180 >gi|242910154|ref|YP_002970698.1| NADH-plastoquinone oxidoreductase subunit 6 [Alsophila spinulosa] gi|218454823|gb|ACK77160.1| NADH-plastoquinone oxidoreductase subunit 6 [Alsophila spinulosa] Length = 195 Score = 88.9 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 9/164 (5%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L ++ S VV++ N ++S F L F + +L+L A+ +A L+VYVGA+ V Sbjct: 14 LIELGILLGSLGVVSLANVVHSAFLLGLVFTRISLSYLVLNADSLAAAQLLVYVGAINVL 73 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV---- 125 + + + D E P + +FI + A + S M++S + Sbjct: 74 IVSAVTVTD---EPTSPNSTTNWSIGYFITLGACTGLFSLSTIMIYSTRWSIVNESKILV 130 Query: 126 --FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 NNV+ +G L T + P E+ +LL++++GAI L Sbjct: 131 EKTSENNVQGLGYKLLTTFLVPFELLSILLLVALVGAITLARNE 174 >gi|77164628|ref|YP_343153.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosococcus oceani ATCC 19707] gi|254433511|ref|ZP_05047019.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nitrosococcus oceani AFC27] gi|76882942|gb|ABA57623.1| NADH dehydrogenase subunit J [Nitrosococcus oceani ATCC 19707] gi|207089844|gb|EDZ67115.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nitrosococcus oceani AFC27] Length = 167 Score = 88.9 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 73/138 (52%), Gaps = 2/138 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY+ + +A++S+ +V+T N I+++ LI + + A +F LLGA F A + +++Y G Sbjct: 2 EITFYIAAIIAVVSTAMVITRLNAIHALLYLIVSLLAVALIFFLLGAPFAAALEVIIYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ E + + + + +++ +++ + LS Sbjct: 62 AIMVLFVFVMMMLNLGEEAVAQENRWLTPSMWIGPGILSFVLLIELVYLLVAESSALSST 121 Query: 125 VFKGNNVENIGKVLYTQY 142 + +G L+ Y Sbjct: 122 KMIPP--QQVGITLFGPY 137 >gi|157816261|ref|YP_001492832.1| NADH dehydrogenase subunit 6 [Tilletia indica] gi|187373139|ref|YP_001876482.1| ND6 [Tilletia walkeri] gi|115361454|gb|ABI95820.1| NADH dehydrogenase subunit 6 [Tilletia indica] gi|144925994|gb|ABP03928.1| ND6 [Tilletia walkeri] Length = 294 Score = 88.9 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 58/115 (50%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + AI S LV+T +NP+ SV LI FVN AG +LLG F+ + L+VY Sbjct: 1 MNNFLLDFLAIRAIFSGILVITSKNPVISVLFLISVFVNIAGYLILLGVGFIGISYLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VGA+ + FLF++MML++ I K I+ + I + + S Sbjct: 61 VGAIAILFLFVVMMLNLQIAELSSIGKEYTQNIPLGTIIRSLFIFELVSLLPISN 115 Score = 43.9 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 26/40 (65%) Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +E+IG +LYT + L ++ ILLL+MIG I L + ++ Sbjct: 254 IESIGYLLYTNNRFWLILTSVILLLAMIGPITLSISNKNR 293 >gi|218176294|ref|YP_002364551.1| NADH-plastoquinone oxidoreductase subunit 6 [Festuca arundinacea] gi|215882378|gb|ACJ70808.1| NADH-plastoquinone oxidoreductase subunit 6 [Festuca arundinacea] Length = 160 Score = 88.9 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 10/133 (7%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M ++ Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVN--GSECS 87 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 K +G F I+ ++ + ++ + NNV+ +G Sbjct: 88 KDKNYWTIGDGFTSIVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQMGIH 147 Query: 138 LYTQYAYPLEISG 150 L T + P E Sbjct: 148 LATDFYLPFEFIS 160 >gi|261879872|ref|ZP_06006299.1| NADH dehydrogenase I [Prevotella bergensis DSM 17361] gi|270333465|gb|EFA44251.1| NADH dehydrogenase I [Prevotella bergensis DSM 17361] Length = 175 Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 70/171 (40%), Gaps = 6/171 (3%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + ++ V + + L+ AG++ +LG F+ + +Y G Sbjct: 5 IVFCILAVVILGAAIASVLTARIMRAATFLLLVLFGIAGIYFVLGYTFLGAAQISIYAGG 64 Query: 66 VIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + + ++F I ++ + E K + + I ++ ++ F A + + Sbjct: 65 ITIMYIFAINLMSKHSLQGLVEQFKGKRVVQGALISLVGLATVLVVYLKSEFLAHAQFNS 124 Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + V+ IG+ L QY P E+ LL +IG I++ + + Sbjct: 125 VADLELPVQKIGEALVGSEKYQYVLPFELISVFLLACIIGGIMIARKEDKK 175 >gi|116749372|ref|YP_846059.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Syntrophobacter fumaroxidans MPOB] gi|116698436|gb|ABK17624.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Syntrophobacter fumaroxidans MPOB] Length = 172 Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 4/150 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + FY+ + + + S+ + +T RN +++V LIF++ A LF L GA +A ++ Sbjct: 1 MTLYAFLFYIVAGITVASTAMAITRRNLVHAVIYLIFSYFGTAVLFYLFGAPLLAAFEVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA++V FLFI+MM+ I+ +L + G+ + + M+ + G Sbjct: 61 IYAGAIMVLFLFIVMMIRIESYGELMFPPGQWLPAAVFGL----VYLVVGILMISATPGT 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISG 150 L + ++ + +EI Sbjct: 117 EIPLQTVLATPREFARYVFQNHWLSVEIVS 146 >gi|323345261|ref|ZP_08085484.1| NADH-quinone oxidoreductase subunit J [Prevotella oralis ATCC 33269] gi|323093375|gb|EFZ35953.1| NADH-quinone oxidoreductase subunit J [Prevotella oralis ATCC 33269] Length = 173 Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 6/170 (3%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + S + + S+ + V + + + LIF AGL+ LL ++ + +Y G Sbjct: 5 IMFCILSVVILGSAIMCVMTKRIMRAATFLIFVLFGVAGLYFLLDYTYLGAAQISIYAGG 64 Query: 66 VIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAEGE 120 + V ++F I ++ + E K + + + +V F+ SA Sbjct: 65 ITVLYIFAIQLVSKRTLQGLVERIKGSRLIAGLLVSLFGLATVVIVLLKNKFLDMSASVS 124 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + +G Y QY P E LL +IG +++ + + Sbjct: 125 DTEVPMNTIGTALVGSEKY-QYVLPFEFISVFLLACIIGGLMIARKEDKK 173 >gi|58045440|gb|AAW65047.1| NADH dehydrogenase subunit 6 [Dictyoneurum californicum] Length = 311 Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 54/106 (50%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + I V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATIGGILGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LIV + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGTLIFILFLIVVIYS 110 >gi|78042971|ref|YP_360251.1| proton-translocating NADH-quinone oxidoreductase subunit J [Carboxydothermus hydrogenoformans Z-2901] gi|77995086|gb|ABB13985.1| proton-translocating NADH-quinone oxidoreductase, J subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 169 Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + + F + +F+ I S+ VV +RN ++SV L FV A +L+L A F+A + LVVY Sbjct: 5 EVIAFAIVAFLLIFSALGVVFMRNIVHSVLFLAATFVLMAVTYLMLDAGFLAGVQLVVYA 64 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GAV + +F +M+ R + I++ + + S +V + R Sbjct: 65 GAVSIMVVFAVMLTKRSDLHETNLFNR---LTIPGAIISFLVFIGLSWVVVKTPWNLAER 121 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + + +++ ++ P E++ +LL+++IGAI+L L + Sbjct: 122 PLVDPMAINKLADLMFGKFVIPFEVAAVLLLVALIGAIILALEVKP 167 >gi|326777313|ref|ZP_08236578.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] gi|326657646|gb|EGE42492.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] Length = 212 Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 2/167 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 35 EIAFLLVGLVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 94 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + AA +V + +L Sbjct: 95 SVVVLLLFGLMLTRAPIGRSPDADSGNRWVALGVAAAAAAALVWVVVDAFRTTWIDLDGP 154 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + E G L+ + P E +LL +++GAIVL +H D Sbjct: 155 AQ--GSTEVTGAFLFRNWVLPFEALSVLLLAALVGAIVLSRKHDTDT 199 >gi|260592329|ref|ZP_05857787.1| NADH dehydrogenase I, subunit 6 [Prevotella veroralis F0319] gi|260535716|gb|EEX18333.1| NADH dehydrogenase I, subunit 6 [Prevotella veroralis F0319] Length = 179 Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 76/172 (44%), Gaps = 7/172 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ V+ + + + +L+F AGL+ LL F+ + +Y G Sbjct: 5 IMFAILAVVILASAIFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAAQISIYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 + + ++F I ++ + KR FL + + A ++V + ++ Sbjct: 65 ITMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAAIALVGFATVVVVLLKNALINSTIVNG 124 Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170 ++ K ++ IG+ L + Y P E LL +IG +V++ +++ Sbjct: 125 DMLSKEVTMDTIGQNLMSADKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 176 >gi|225155888|ref|ZP_03724373.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae bacterium TAV2] gi|224803341|gb|EEG21579.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Opitutaceae bacterium TAV2] Length = 178 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 6/174 (3%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L L + ++++ +++RN I S L+ A++ A +L GAEFVA ++VYVGA Sbjct: 2 LTLLLIAAFTLVTAAAALSLRNIIRSAIFLVPAWIGIAAFYLWAGAEFVAFAQVLVYVGA 61 Query: 66 VIVFFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS- 122 + + LF +++ D EP +R + G A +I A + + Sbjct: 62 ISMVVLFAVVLTRRAPDDPAEEPATRRRLNWAVAAGGAVAAMIFAAILCTALPSPDSAAL 121 Query: 123 ---RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 ++++G L ++A + I+G +L ++++G+I+L + R Sbjct: 122 ASDAPPPPSLTIKDLGHALTGEHAAAVLITGALLTVALLGSILLAATDKPRDAR 175 >gi|313202847|ref|YP_004041504.1| NADH dehydrogenase subunit j [Paludibacter propionicigenes WB4] gi|312442163|gb|ADQ78519.1| NADH dehydrogenase subunit J [Paludibacter propionicigenes WB4] Length = 167 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 7/168 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + FY+ + I S + VT + I S L+F + AGL+LLLG ++ + + VY Sbjct: 3 QQIIFYILGAIIAIFSIMAVTSKRIIRSATYLLFVLLATAGLYLLLGYNYLFAVQIAVYA 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 G V+V F+F I++ + E + + + GI A + + + ++ + Sbjct: 63 GGVMVLFIFAILLTNRPGESVKTELPIRRVAA---GITALAGVAFCGHIIYWNIRKVSTL 119 Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + + +G + QY P E +LL +IGAI++ + Sbjct: 120 VAQADLTPQQLGHTMMGTEKYQYLLPFEAISILLLACIIGAIMIARKR 167 >gi|124004524|ref|ZP_01689369.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Microscilla marina ATCC 23134] gi|123990096|gb|EAY29610.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Microscilla marina ATCC 23134] Length = 193 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 94/193 (48%), Gaps = 23/193 (11%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+++ +FF + + + S+ +++ R +Y+ FSL+ + + L++ GA+F+A+ ++ Sbjct: 1 MILKIVFFGFVALIGV-STLVLLGTRKVLYAAFSLLLILLGISALYVFAGADFLAVTQII 59 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPR-----------------KKRGFLGSFFIGILAA 103 +YVG ++V LF IM+ + + R K R L +G+ Sbjct: 60 IYVGGILVLLLFGIMLTNRPPQNLSIRFSNPFQQDETSDVQPLTKTRNNLAGIVLGLGLL 119 Query: 104 ELIVCA-----SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMI 158 ++V A M + + ++ V K + V+ +G L TQY E+ +L+++++ Sbjct: 120 AILVFAIHKANLGQMPWIKQAVQNQQVIKQSTVQGLGIQLMTQYVLVFEVIAVLLMVALL 179 Query: 159 GAIVLMLRHRRDI 171 GA+++ R + Sbjct: 180 GAVLIAGRTEKKT 192 >gi|148260116|ref|YP_001234243.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Acidiphilium cryptum JF-5] gi|146401797|gb|ABQ30324.1| NADH dehydrogenase subunit J [Acidiphilium cryptum JF-5] Length = 166 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 2/158 (1%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F + + +A++++ +++T + ++ + L + + A +F +LGA F A + +++Y GA++ Sbjct: 5 FVISAIIAVVATAMMITRPSAVHGLLYLTVSLLAVALVFFVLGAPFAAALEVIIYAGAIM 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F+F+IMML+I A ++ + A L+ + S G L Sbjct: 65 VLFVFVIMMLNIGEAAARLESSWLHPATWVGPSILALLLAIELGAVAVS--GGLRHPATS 122 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + +G L Y +E++ F+LL ++ A L Sbjct: 123 VISAHAVGVALVGPYMLAVELASFLLLAGLVAAFHLGR 160 >gi|294814433|ref|ZP_06773076.1| Putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC 27064] gi|326442823|ref|ZP_08217557.1| putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC 27064] gi|294327032|gb|EFG08675.1| Putative NADH dehydrogenase chain J [Streptomyces clavuligerus ATCC 27064] Length = 218 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 2/143 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ L VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 20 EIVFLLVGLVTFGAAVLTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 79 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + AA +V + +L Sbjct: 80 SVVVILLFGLMLTRAPIGRSPDADSGNRWVALAVALTAATALVWVVVDAFRTTWIDLDGP 139 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 V + E G +L+ + P E Sbjct: 140 VQ--GSTEVTGSILFRHWVLPFE 160 >gi|27904654|ref|NP_777780.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372471|sp|Q89AT8|NUOJ_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|27904051|gb|AAO26885.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 164 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 1/154 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FFY S I+ + + RN +YS+ LI +FV + +F LGA F A + +++Y G Sbjct: 2 EFFFYSSSLATIVFTVCSIFSRNLMYSLLYLILSFVFTSCVFFSLGATFAAALEVIIYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F IMM + K ++I L I+ F + S + ++ Sbjct: 62 AIMVLFVFFIMMFNFKKSTLYAEKIFDKNNYYYINFLFLLCILIFPFFFILSYLYK-EKI 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMI 158 + + + + L++ Y +E+S +LL ++I Sbjct: 121 FYMVVSTKLVAIKLFSDYILVIELSSIVLLSALI 154 >gi|116329147|ref|YP_798867.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330245|ref|YP_799963.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121891|gb|ABJ79934.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123934|gb|ABJ75205.1| NADH dehydrogenase (ubiquinone), J chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 224 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 43/206 (20%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q L F+LF+ + I+SS V+ N I + L+ +F + A ++ ++ A F+A + L+VY Sbjct: 8 QLLLFFLFASVMILSSLGVIFHPNAITAAVLLVLSFFSLAAIYAVMNAVFIATMQLLVYA 67 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 GA++V +F++M+L + + + + L L V + E S Sbjct: 68 GAIMVLVVFVLMLLSLREDDTKLFLFEKPIKKLLYLGLVMFLDVLLITAVQDGIPSENSP 127 Query: 124 -------------------------------------------LVFKGNNVENIGKVLYT 140 LV N +G ++ Sbjct: 128 KIGYTKTRDGRSMDYSFTIHPRRPEYKEFEEYKSKGLSIRPPSLVEVSGNTAVVGSAMFL 187 Query: 141 QYAYPLEISGFILLLSMIGAIVLMLR 166 +Y P E+ +LL +++G +VL + Sbjct: 188 RYLLPFELISILLLAAVLGVVVLGKK 213 >gi|58045436|gb|AAW65045.1| NADH dehydrogenase subunit 6 [Costaria costata] Length = 311 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 54/106 (50%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + I V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGILGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L F I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYFGALIFVIFLIAAIYS 110 >gi|297570905|ref|YP_003696679.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcanobacterium haemolyticum DSM 20595] gi|296931252|gb|ADH92060.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Arcanobacterium haemolyticum DSM 20595] Length = 330 Score = 88.2 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 85/182 (46%), Gaps = 3/182 (1%) Query: 4 QSLFFYLFSFMAIISSF-LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ F + + + + ++ R + + S+I V A L+ L A F+ ++ +VVY Sbjct: 12 ETILFSVTAVGMVALAIFGLLITRKAVLTTLSVIGVMVGFAVLYTALEAPFMGVVQVVVY 71 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+++ FLF++M++ +D + + +G + LI+ F + G Sbjct: 72 TGAILMMFLFVLMLIGVDSADSGHETLKVQRPVAILGGVGIALILIGVAFGAHAPAGIGL 131 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLES 182 N + ++++ L+++G +L+++ +GA+ L R R +K + ++L Sbjct: 132 EQANAVTNPVGVATLIFSSSVLTLQLTGTLLIVAALGAMTLTHRDR--VKERITQEELAH 189 Query: 183 NP 184 Sbjct: 190 KR 191 >gi|260677470|ref|YP_003208252.1| NADH-plastoquinone oxidoreductase subunit 6 [Coix lacryma-jobi] gi|209361408|gb|ACI43323.1| NADH-plastoquinone oxidoreductase subunit 6 [Coix lacryma-jobi] Length = 176 Score = 87.8 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + + LL + FVA+ L++YVGA+ V +F +M + + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVSGSEWSKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGKV 137 K +G F +L + + ++ + NNV+ IG Sbjct: 90 --KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIH 147 Query: 138 LYTQYAYPLE 147 L T + P E Sbjct: 148 LATDFYLPFE 157 >gi|290958202|ref|YP_003489384.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces scabiei 87.22] gi|260647728|emb|CBG70833.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces scabiei 87.22] Length = 217 Score = 87.8 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 34 EIAFLLVGLVTFGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 93 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + AA +V + +L Sbjct: 94 SVVVLLLFGLMLTKAPIGRSPDADSGNRWAALTVAVAAAAALVWVVVDAFRTTWIDLDGP 153 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + E G+ L+ + P E +LL +++GAIVL + + Sbjct: 154 AA--GSTEATGESLFQNWVLPFEALSVLLLAALVGAIVLSRKAK 195 >gi|260912214|ref|ZP_05918766.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295] gi|260633648|gb|EEX51786.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295] Length = 173 Score = 87.8 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 4/169 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + I S+ + V + + + L+F AG++ LL F+ + +Y G Sbjct: 5 IMFCILAVVIIGSAIVCVFTKRIMRAATFLLFVLFGVAGVYFLLDYTFLGTAQIAIYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + + ++F I ++ ++RG + L+ A + + +V Sbjct: 65 LTMLYIFAIQLVSKRTLQGLQERQRGKTVVAGALVALIGLVTVALVLLKNQFIDMSASMV 124 Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + IG+ L QY P E LL +IG I++ + + Sbjct: 125 DAEVPMSVIGEKLVGAGKYQYVLPFEFISVFLLACIIGGIMIARKEDKK 173 >gi|256371189|ref|YP_003109013.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidimicrobium ferrooxidans DSM 10331] gi|256007773|gb|ACU53340.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Acidimicrobium ferrooxidans DSM 10331] Length = 192 Score = 87.8 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID-- 80 V+ R P+++ L+ A LF+ GA+F+A + +VVY GAV+V FLF+IM+L +D Sbjct: 29 VSARQPVHAALFLVLTLFGVAILFIQEGAQFLAAVQVVVYAGAVVVLFLFVIMLLGVDRV 88 Query: 81 -IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 + R + + + EL + A V + L+ + G+N+ + + ++ Sbjct: 89 EVSSIVGSGWRVWAAGIGVAAVLVELGLLAIGHEV-TGASSLAGKLSAGSNLGVLARSVF 147 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 T Y P E++ +L++++IGA+VL R R+ +S+ E +P Sbjct: 148 TTYVLPFELTSVLLVIAVIGAVVLARRLRQRSDATTVSRSEEVHP 192 >gi|87043016|ref|YP_492630.1| NADH dehydrogenase subunit 6 [Dictyostelium citrinum] gi|122000117|sp|Q2LCR2|NU6M_DICCI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|84682116|gb|ABC60381.1| NADH dehydrogenase subunit 6 [Dictyostelium citrinum] Length = 226 Score = 87.8 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 32/204 (15%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 +F+++ NPIYS+ +LI + A + L + EF+A I ++V VGA+ V FLFI+MM+ Sbjct: 17 CTFVILRSVNPIYSILNLIVIYGCYASILLTVEMEFLACIYILVNVGAIAVLFLFIVMMI 76 Query: 78 DIDIEVAEPRKKRGFLGSF--FIGILAAELIVC-----------------------ASNF 112 +I+I + K+ + F FIG++ I+ + Sbjct: 77 NINIVEIQETMKKYNIYMFVGFIGLIGIMGILITNYQIRIKEEVIADFSMFLLNTEITTL 136 Query: 113 MVFSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM------L 165 + + L + ++ +G V+Y + ++ ILL+ M+G I + Sbjct: 137 QATPSYLDFYELFVETTDLRAMGSNVIYGSQSIWFIMACIILLIGMVGVIYITEDLIIEK 196 Query: 166 RHRRDIKRQDISKQLESNPDNSIV 189 R +RQDI+ Q+ +I Sbjct: 197 RKLNARRRQDINSQVLREYKITIK 220 >gi|283778525|ref|YP_003369280.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula staleyi DSM 6068] gi|283436978|gb|ADB15420.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula staleyi DSM 6068] Length = 328 Score = 87.8 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 61/126 (48%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 ++ F++ + +AI S+ + ++P+YS + + AGLF GAEF+ + T+VV Sbjct: 72 IIAQGVFWVLALIAIGSAVGTIGSQSPVYSAIWFAMSLLGTAGLFFYQGAEFLGVATIVV 131 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA++V FLF+IM+ R G F I AA I + + + +L Sbjct: 132 YAGAIVVTFLFVIMLAQPSGHSDYDRISWGSAARFLSVIAAATFIGLFTMLLGGLKQPDL 191 Query: 122 SRLVFK 127 + V Sbjct: 192 RQQVAS 197 Score = 42.7 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 32/54 (59%) Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 AE V +V +G+ +++++ +E++G +LL++++GAI + ++ + Sbjct: 267 AEPTFVPDVQDRQHVAGLGRYIFSRHLVGVEVAGSLLLVALVGAIAIAIQGKPR 320 >gi|149390406|ref|YP_001294405.1| NADH dehydrogenase subunit 6 [Dioscorea elephantipes] gi|221272321|sp|A6MMR0|NU6C_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|148668098|gb|ABR01482.1| NADH-plastoquinone oxidoreductase subunit 6 [Dioscorea elephantipes] Length = 176 Score = 87.8 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 8/152 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + + I+ VV + N IYS FSL + + ++ + FVA L++Y Sbjct: 7 IHDILVIFLGSVLILGGLGVVLLNNLIYSAFSLGWVLFCISLFYISSNSYFVAAAQLLIY 66 Query: 63 VGAVIVFFLFIIMML-------DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VGA+ V +F +M + D + S F ++ + Sbjct: 67 VGAINVLIIFAVMFISGSEYSNDSHLWTVGDGVTSVVCTSIFFSLITTIPDTSWYGIIWT 126 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLE 147 + ++ +NV+ IG L T + P E Sbjct: 127 TRSNQIIEQDL-ISNVQQIGIHLSTNFYLPFE 157 >gi|77019999|ref|YP_337883.1| NADH dehydrogenase subunit 6 [Aspergillus niger] gi|75993219|gb|ABA33724.1| NADH dehydrogenase subunit 6 [Aspergillus niger] Length = 217 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 37/193 (19%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMI-TLVVYVGAVIVFFL 71 ++I+ RNP+ S LI FV+ AG+ +L+G + + + ++VYVGA FL Sbjct: 25 IISILFGIFTTISRNPLVSAVFLIGVFVDIAGVLILVGDDDIGVSSYILVYVGAAATLFL 84 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV------CASNFMVFSAEGELSRL- 124 I+M++++ I R + L ++ N +V S+ S + Sbjct: 85 LILMLINMRISELVSETNRDTPWAVITVSLFYFIMGQVTPSNFTDNTIVTSSSTSFSEVY 144 Query: 125 -----------------------------VFKGNNVENIGKVLYTQYAYPLEISGFILLL 155 + + ++ IG +YT Y+ L IS ILL+ Sbjct: 145 DLQVDDEILNIVDLQQETASASSKSGDTSLVELPHLSGIGNSMYTNYSLWLIISSVILLV 204 Query: 156 SMIGAIVLMLRHR 168 M+GAIV+ ++ + Sbjct: 205 GMVGAIVITIKQK 217 >gi|90579197|ref|ZP_01235007.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Vibrio angustum S14] gi|90440030|gb|EAS65211.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Vibrio angustum S14] Length = 177 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 79/168 (47%), Gaps = 5/168 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ FY S + ++++ ++ V+ P++ L + + A +F LLGA F+A + ++ Sbjct: 1 MLTWNIIFYASSAIMLLAAISLLFVKEPMHGAVYLTTSLLALAVIFYLLGAPFIAALQII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGA++V F+F IM+ + L + I+ E + ++ F Sbjct: 61 LYVGAIMVLFVFFIMLSPASRTFPLTANRTVILPVILLTIMLVEAFIVLNHGHQFYTIET 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + + +G L+ Y +E +LL +++ I L + + Sbjct: 121 IKTISP-----KAVGADLFNHYKLAIEALSTLLLGALVAVIYLAAQMK 163 >gi|58045444|gb|AAW65049.1| NADH dehydrogenase subunit 6 [Alaria fistulosa] Length = 311 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 55/106 (51%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + I V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGILGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I A L+V + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGSLIFALFLVVVIYS 110 >gi|294674395|ref|YP_003575011.1| proton-translocating NADH-quinone oxidoreductase J subunit [Prevotella ruminicola 23] gi|294473669|gb|ADE83058.1| putative proton-translocating NADH-quinone oxidoreductase, J subunit [Prevotella ruminicola 23] Length = 171 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 6/170 (3%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++ F + + I S+ + VT + + ++F AG++ LL F+ + VY Sbjct: 3 NTVMFIILAVFIIASALMCVTTTKIMRAATFMLFVLFGVAGIYFLLDYTFLGAAQISVYA 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 G V + ++F I ++ + ++R G LAA + ++ Sbjct: 63 GGVTMIYVFAIQLVSKR--TLQGLEERVKSSKMITGALAALAGLVVVGLILLKTGFYTQE 120 Query: 124 LVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + ++ IG L QY P E LL +IG +V+ + + Sbjct: 121 IAGVEVPMKEIGTALVGSGKYQYVLPFEFISVFLLACIIGGLVVARKEDK 170 >gi|325298887|ref|YP_004258804.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides salanitronis DSM 18170] gi|324318440|gb|ADY36331.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacteroides salanitronis DSM 18170] Length = 175 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 3/170 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + Q++ FY+ + + S L VT + + L+F A +F +LG F+ + L+ Sbjct: 7 LSFQNIVFYVVAAAIALCSVLAVTSGKLLRAATYLLFVLFGTAAIFFMLGYTFLGAVQLM 66 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF--IGILAAELIVCASNFMVFSAE 118 VY G +IV ++F I + D ++ K + A L++ +N +A Sbjct: 67 VYAGGIIVLYVFSIALTRSDKDMRYKISKARLFSVLATTVVGAALVLLLLFTNGFALNAI 126 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 L + + IG Y Q+ P E+ +LL MIG I++ + + Sbjct: 127 PLGEELPSREVGMALIGTEKY-QFVLPFEVVSVLLLACMIGGILIARKEK 175 >gi|238061175|ref|ZP_04605884.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. ATCC 39149] gi|237882986|gb|EEP71814.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Micromonospora sp. ATCC 39149] Length = 190 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 5/134 (3%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 MA+ + LVVT R+ + + L+ AGL+L+L AE VA + +++YVGAV+V LF Sbjct: 1 MAVGAGALVVTTRHLVRAGLYLVVCLGALAGLYLVLTAELVAWVQVLIYVGAVVVLLLFA 60 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133 +M+ I ++ + G+ + G L + ++ + + E Sbjct: 61 VMLTRAPIGASDDLDRPGWPAALIGGGTGLGLAALLVDAFRWT-----RVDLPEPGTAER 115 Query: 134 IGKVLYTQYAYPLE 147 +G+ ++ + P E Sbjct: 116 LGEQVFRTWVLPFE 129 >gi|58045438|gb|AAW65046.1| NADH dehydrogenase subunit 6 [Agarum clathratum] Length = 311 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFFFFLIAAIYS 110 >gi|329938294|ref|ZP_08287745.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces griseoaurantiacus M045] gi|329302783|gb|EGG46673.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces griseoaurantiacus M045] Length = 215 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 2/143 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 31 EIAFLLVGLVTLGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 90 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + AA +V + +L Sbjct: 91 SVVVLLLFGLMLTRAPIGRSPDTDSGNRWAALTVALAAAAALVWVVADAFRTTWVDLDGA 150 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + E G+ L+ + P E Sbjct: 151 P--SGSTEVTGQALFQNWVLPFE 171 >gi|11466192|ref|NP_066515.1| NADH dehydrogenase subunit 6 [Naegleria gruberi] gi|10444227|gb|AAG17793.1|AF288092_18 NADH dehydrogenase subunit 6 [Naegleria gruberi] Length = 201 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 17/196 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FFY + IIS+ +V V NPI +V LI F N + +F+LL +F+ ++ L+ Sbjct: 1 MSFLIFFFYFLA---IISAICMVIVINPINAVLFLISVFFNTSMIFILLNVDFMGLLFLM 57 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE-G 119 +YVGA+ V FLFI+MML+I + + + + +V+ Sbjct: 58 IYVGAIAVLFLFIVMMLNIKKIEKDNSFYLTVGSFILLFYFLQFFFIFFYDSLVYLPRVF 117 Query: 120 ELSRLVFKGNN------------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + +N ++ +G +LY +Y + L + L +M+GAI L Sbjct: 118 NIDLNSYFFSNFHFLDESMRFMLIKKMGFLLYYEYFFFLIFAALTLFAAMLGAIYLTNEK 177 Query: 168 RRDIKRQDISKQLESN 183 + R +QL N Sbjct: 178 QGYSMR-HQYQQLSRN 192 >gi|27544895|ref|NP_775410.1| NADH dehydrogenase subunit 6 [Lecanicillium muscarium] gi|27450727|gb|AAO14669.1|AF487277_15 NADH dehydrogenase subunit 6 [Lecanicillium muscarium] Length = 214 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 30/194 (15%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +A++ V+ +NPI S+ LI F + + +L G F+ L+VY+GAV Sbjct: 21 FLDILSVIAVLFGITVIVNKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 80 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114 + FLFI+M+++I + + FIGIL + + + Sbjct: 81 SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 140 Query: 115 ------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156 F + + +++ IG +LYT Y L +S ILLL+ Sbjct: 141 NYNNVLPAVHNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 200 Query: 157 MIGAIVLMLRHRRD 170 M+GAI++ ++ + Sbjct: 201 MVGAIIITIKQENN 214 >gi|126666312|ref|ZP_01737291.1| NADH dehydrogenase subunit J [Marinobacter sp. ELB17] gi|126629113|gb|EAZ99731.1| NADH dehydrogenase subunit J [Marinobacter sp. ELB17] Length = 176 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FYL +A++++ V++ NP++ V L+ + + A +F LGA F + ++VY GA+ Sbjct: 4 AFYLSGLVAVLATLGVISNTNPVHGVLYLVVSLLAVAMVFFALGAPFAGALEIIVYAGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F+F++MML++ + ++ L A +++ ++ +G + + Sbjct: 64 MVLFVFVVMMLNLGETAVAQERIWLQPRTWLGPSLLAGVLLLTLIDLLLRGDGGV-LVQG 122 Query: 127 KGNNVENIGKVLYTQY 142 + + +G +L+ + Sbjct: 123 DVLSAKQVGTILFGPW 138 >gi|290489860|gb|ADD31337.1| NADH-plastoquinone oxidoreductase subunit 6 protein [Rhododendron simsii] Length = 177 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 8/133 (6%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+ + NPIYS FSL F + + ++L + FVA +++YVGA+ V +F +M ++ Sbjct: 26 VILLPNPIYSAFSLGLVFFSISFFYILSNSHFVAAAQILIYVGALNVLIIFAVMFMNGSE 85 Query: 82 EVAEPRKK-------RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 + S F+ ++ L + + ++ +N + I Sbjct: 86 YYKDFYLWTVGDGITSLVCTSIFVSLITTILDTSWYGIIWATRSNQILEQDL-ISNSQQI 144 Query: 135 GKVLYTQYAYPLE 147 G L T + P E Sbjct: 145 GIHLSTDFFLPFE 157 >gi|108796692|ref|YP_636526.1| NADH dehydrogenase subunit 6 [Zygnema circumcarinatum] gi|122211732|sp|Q32RK0|NU6C_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|61393676|gb|AAX45818.1| subunit 6 of NADH-plastoquinone oxidoreductase [Zygnema circumcarinatum] Length = 181 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 5/145 (3%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +L F + F ++ + VV + IYS L F F+ A L+LLL A+F+A +++ Sbjct: 7 STNTLLFVVLEFAILVGALGVVLLSRVIYSALLLGFVFICVALLYLLLNADFLAAAQVLI 66 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGAV V +F IM++ +V K G + S F I L+ + L Sbjct: 67 YVGAVNVLIVFAIMLVSTPDDVKNKPKTTGEIISAFTFIALFVLLTIMIFTTSWDTHHNL 126 Query: 122 SR-----LVFKGNNVENIGKVLYTQ 141 + L +NV+ IG L T Sbjct: 127 ATQDEVLLQPLMSNVQTIGFHLLTD 151 >gi|261416520|ref|YP_003250203.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372976|gb|ACX75721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327558|gb|ADL26759.1| NADH-quinone oxidoreductase, J subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 180 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + ++F + + +A+ S+ V+ R+P+Y SL+ + V+ AG++ LLG+ F+ ++ ++VY Sbjct: 2 LALIYFIVLAVIAVGSAVCVLLSRHPLYGALSLVASMVSLAGIYGLLGSPFLGVVQIMVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA+++ F+IM+L+ + P + L I+ A L+ A + + Sbjct: 62 AGAIMMLLTFVIMVLNGARDSHTPMFDKVSLFVIPAVIVLAGLVGFALVRAPIAFDAATV 121 Query: 123 RLVFKGNNVENIGKVLYT------QYAYPLEISGFILLLSMIGAIVLMLRHR 168 R + K L+ Y E+ G +LL +M GA VL+ + R Sbjct: 122 RGSVAITS-----KTLFDVAQSGPGYFVLFEVLGVLLLSAM-GAAVLLAKKR 167 >gi|4261644|gb|AAD13944.1|S64009_1 NADH dehydrogenase subunit 6 [Marchantia polymorpha] Length = 109 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 44/104 (42%), Positives = 62/104 (59%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+F +A++S +V+ +NP++SV LI F N +GL +LLG +F AMI LVVYVGA Sbjct: 2 ILFYVFVVLALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + V FLF++MML I IE R IG++ I Sbjct: 62 IAVLFLFVVMMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLM 105 >gi|302553483|ref|ZP_07305825.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces viridochromogenes DSM 40736] gi|302471101|gb|EFL34194.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces viridochromogenes DSM 40736] Length = 209 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ + VT R +++ L+ A +LLL AEF+A + +++YVG Sbjct: 17 EIAFLLVGLVTFGAAIVTVTTRQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 76 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + AA +V + +L Sbjct: 77 SVVVLLLFGLMLTRAPIGRSPDADSGNRWAALTVAVAAAAALVWVVVDAFRATWIDLDGP 136 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + E G L+ + P E +LL +++GAIVL + + Sbjct: 137 AA--GSTEATGASLFQNWVLPFEALSVLLLAALVGAIVLSRKAK 178 >gi|239929558|ref|ZP_04686511.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672] gi|291437884|ref|ZP_06577274.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672] gi|291340779|gb|EFE67735.1| NADH dehydrogenase I chain J [Streptomyces ghanaensis ATCC 14672] Length = 255 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 2/143 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ + VT + +++ L+ A +LLL AEF+A + +++YVG Sbjct: 31 EIAFLLVGLVTFGAAVVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 90 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +VIV LF +M+ I + + + + AA +V + +L Sbjct: 91 SVIVLLLFGLMLTRAPIGRSPDADSGNRWVALAVAVAAAAALVWVVVDAFRTTWIDLDGA 150 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 +V G L+ + P E Sbjct: 151 PAGSTDVT--GASLFQHWVLPFE 171 >gi|281419768|ref|ZP_06250767.1| NADH dehydrogenase I, subunit 6 [Prevotella copri DSM 18205] gi|281406144|gb|EFB36824.1| NADH dehydrogenase I, subunit 6 [Prevotella copri DSM 18205] Length = 175 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 71/175 (40%), Gaps = 6/175 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + F + + + + S+ + V + + + L+F AG+F LL ++ + Sbjct: 2 ITANLFMFVILAVVILGSAIMCVFTKRIMRAATFLLFVLFGVAGMFFLLDYTYLGAAQIS 61 Query: 61 VYVGAVIVFFLFIIMMLDID-----IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 VY G + + ++F I ++ +E + + G +G + +IV ++F+ Sbjct: 62 VYAGGITMLYVFAIQLVSKRTLQGLVEHVKGSRIVGRALVCLVGFVTLAVIVLKNHFIDM 121 Query: 116 SAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +A + + +G Y Y P E LL +IG I++ + + Sbjct: 122 AATVADTEVPMDQVGSALVGADKYG-YVLPFEFISVFLLACIIGGILIARKEDKK 175 >gi|21222987|ref|NP_628766.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces coelicolor A3(2)] gi|256785900|ref|ZP_05524331.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24] gi|289769793|ref|ZP_06529171.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24] gi|10129700|emb|CAC08257.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces coelicolor A3(2)] gi|289699992|gb|EFD67421.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces lividans TK24] Length = 197 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 2/164 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 17 EIAFLLVGLVTLAAAVVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 76 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV+V LF +M+ I + + + + +A +V + +L Sbjct: 77 AVVVLILFGLMLTRAPIGRSPDADSGNRWAALTVAVASAAALVWVVVDAFRTTWIDLDGP 136 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 V G L+ + P E +LL +++GAIVL + + Sbjct: 137 AAGSTAVT--GASLFQNWVLPFEALSVLLLAALVGAIVLSRKAK 178 >gi|49574628|ref|NP_848113.2| NADH dehydrogenase subunit 6 [Adiantum capillus-veneris] gi|68565793|sp|Q85FH2|NU6C_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|48476042|gb|AAP29444.2| NADH dehydrogenase subunit 6 [Adiantum capillus-veneris] Length = 197 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 5/170 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + L ++ S V + N + S FSL F + L+ +L A+FVA L+VY Sbjct: 7 IHDFVLALVELGILLGSLGAVLLVNTVNSAFSLGLVFTCISLLYFVLNADFVAAAQLLVY 66 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-----A 117 VGA+ V +F +M+ D + G++ + + ++ + +S Sbjct: 67 VGAINVLTVFAVMITDEPAGSETTARGIGYIITAGTCTILFSILSFVIHNTKWSDLSLIP 126 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +S G+NV+ +G L ++ P E+ +LL +++GAI L Sbjct: 127 QSGISTSGTLGSNVQQLGYKLLGEFVIPFELLSILLLAALVGAINLARNE 176 >gi|313679553|ref|YP_004057292.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oceanithermus profundus DSM 14977] gi|313152268|gb|ADR36119.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Oceanithermus profundus DSM 14977] Length = 156 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 11/165 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M FY + ++ + L VT + + + SL F AGL+LLLG+ +A I +V Sbjct: 1 MSLTAFYALAAFVLVFAILAVTTASMVRAALSLAITFFLIAGLYLLLGSPALAAIQFMVN 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 A+ + LFIIMM G+LAA + V +G+++ Sbjct: 61 ASAIPIMTLFIIMMTQSRASAGPRS------WQIVAGLLAAAAALVFFKGNVGHGDGQIT 114 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + E +G L P E++ +LLL+M+GAIVL R Sbjct: 115 PVSP-----EALGVNLLQAALLPFEVASVLLLLAMVGAIVLARRR 154 >gi|288928303|ref|ZP_06422150.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 317 str. F0108] gi|288331137|gb|EFC69721.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 317 str. F0108] Length = 173 Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 67/169 (39%), Gaps = 4/169 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + I S+ + V + + + L+F AG++ LL F+ + +Y G Sbjct: 5 IMFCILAVVIIGSAIVCVFTKRIMRAATFLLFVLFGVAGVYFLLDYTFLGTAQIAIYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + + ++F I ++ ++RG + L+ A + + +V Sbjct: 65 LTMLYIFAIQLVSKRTLQGLQERQRGKTVVAGALVALIGLVTVALVLLKNQFIDMSASMV 124 Query: 126 FKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + IG+ + QY P E LL +IG I++ + + Sbjct: 125 DAEVPMSVIGEKIVGAGKYQYVLPFEFISVFLLACIIGGIMIARKEDKK 173 >gi|325269273|ref|ZP_08135891.1| NADH dehydrogenase subunit J [Prevotella multiformis DSM 16608] gi|324988400|gb|EGC20365.1| NADH dehydrogenase subunit J [Prevotella multiformis DSM 16608] Length = 179 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 73/172 (42%), Gaps = 7/172 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ V+ + + + +L+F AGL+ LL F+ + + +Y G Sbjct: 5 IMFAVLAVVILASAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAVQISIYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 + + ++F I ++ + KR L +F A ++V + Sbjct: 65 ITMMYIFAIQLVSKRTLQGLSERWLGKRTILAAFIALAGFATVVVVLLKNELIRNTVVEG 124 Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + + ++ +G+ L + Y P E LL +IG +V++ +++ Sbjct: 125 DSLSRELTMDTVGQTLMSADKYGYVLPFEFISVFLLACIIGGLVILNHKKKE 176 >gi|57923588|gb|AAW59541.1| NADH dehydrogenase subunit 6 [Postelsia palmaeformis] gi|58045454|gb|AAW65054.1| NADH dehydrogenase subunit 6 [Postelsia palmaeformis] Length = 311 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 55/106 (51%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L F I I L+V + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYFGILIFFLFLLVAIYS 110 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N+ VK K Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAFFSVKEKP 297 >gi|182436713|ref|YP_001824432.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465229|dbj|BAG19749.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp. griseus NBRC 13350] Length = 228 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 2/167 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 36 EIAFLLVGLVTLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 95 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + AA +V + +L Sbjct: 96 SVVVLLLFGLMLTRAPIGRSPDADSGNRWVALGVAAAAATALVWVVVDAFRTTWIDLDGP 155 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 + E G L+ + P E +LL +++GAIVL +H D Sbjct: 156 AQ--GSTEVTGAFLFRNWVLPFEALSVLLLAALVGAIVLSRKHDTDT 200 >gi|289474440|gb|ADC97831.1| NADH dehydrogenase subunit 6 [Corallium kishinouyei] Length = 154 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLR---------HRRDIKRQDISKQLESN 183 L++M+GAI+L + H RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPSLYDPHVETRSRQDLFLQISRK 152 >gi|153004150|ref|YP_001378475.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. Fw109-5] gi|152027723|gb|ABS25491.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Anaeromyxobacter sp. Fw109-5] Length = 208 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 4/167 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + + + FY+ + +A+ + V RN +YS L+ A + A GL++ L A+FVA+ L+ Sbjct: 42 LTVPGVIFYVLAAIAVAGAVGVAVSRNILYSALGLLMALLGAGGLYVFLSADFVAITQLL 101 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY+G V+V LF +M+ +V G +G G L + Sbjct: 102 VYIGGVLVLVLFAVMLTSRITDVKVSNTSFGPVG----GALLFVAAAPVLLAVALLTPWA 157 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +IG T++ P E++ +LL +++GA+V+ + Sbjct: 158 VRIPDALAPTTASIGNAFLTRWLLPFEVASMVLLATLVGAVVIARKE 204 >gi|57923556|gb|AAW59517.1| NADH dehydrogenase subunit 6 [Pleurophycus gardneri] gi|58045450|gb|AAW65052.1| NADH dehydrogenase subunit 6 [Pleurophycus gardneri] Length = 311 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFVLFLISAIYS 110 >gi|57923532|gb|AAW59499.1| NADH dehydrogenase subunit 6 [Alaria marginata] gi|57923536|gb|AAW59502.1| NADH dehydrogenase subunit 6 [Alaria nana] gi|57923540|gb|AAW59505.1| NADH dehydrogenase subunit 6 [Alaria taeniata] gi|57923572|gb|AAW59529.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia] gi|58045442|gb|AAW65048.1| NADH dehydrogenase subunit 6 [Alaria marginata] Length = 311 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFVFFLIAAIYS 110 >gi|89073309|ref|ZP_01159839.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Photobacterium sp. SKA34] gi|89051019|gb|EAR56483.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Photobacterium sp. SKA34] Length = 177 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 80/168 (47%), Gaps = 5/168 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ FY S + ++++ ++ V+ P++ L + + A +F LLGA F+A + ++ Sbjct: 1 MLTWNIIFYASSAIMLLAAISLLFVKEPMHGAVYLTTSLLALAVIFYLLGAPFIAALQII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGA++V F+F IM+ + L + ++ E + ++ F A Sbjct: 61 LYVGAIMVLFVFFIMLSPASRTFPLTANRTVILPVILLTVMLVEAFIVLNHGHQFYAIET 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + + + +G L+ Y +E +LL +++ I L + + Sbjct: 121 IKTISP-----KAVGADLFNHYKLAIEALSTLLLGALVAVIYLAAQMK 163 >gi|57923528|gb|AAW59496.1| NADH dehydrogenase subunit 6 [Alaria esculenta] Length = 311 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFVFFLIAAIYS 110 >gi|81230387|ref|YP_398774.1| NADH dehydrogenase subunit 6 [Aspergillus tubingensis] gi|77157975|gb|ABA62003.1| NADH dehydrogenase subunit 6 [Aspergillus tubingensis] Length = 217 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 37/193 (19%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAM-ITLVVYVGAVIVFFL 71 ++I+ RNPI +V LI FV+ AG+ +L+G +++ + ++V VGA FL Sbjct: 25 IISILFGIFTTISRNPIVAVLFLIGLFVDIAGVLILVGIDYIGLSSYILVNVGAASTLFL 84 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAEGELSRLVFKGN 129 I+M++++ I R + L +I V SNF + S + Sbjct: 85 LILMLINMRISELVSETNRDTPWAVITVSLFYFIIGQVTPSNFTDNTIVTSSSNSFSEVY 144 Query: 130 NVE----------------------------------NIGKVLYTQYAYPLEISGFILLL 155 +++ IG ++YT Y+ L IS ILL+ Sbjct: 145 DLQVDNEILNIVDLQQETASASSKSGDTSLVELPHLGGIGNIMYTNYSLWLIISSVILLV 204 Query: 156 SMIGAIVLMLRHR 168 M+GAIV+ ++ + Sbjct: 205 GMVGAIVITIKQK 217 >gi|303237642|ref|ZP_07324202.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella disiens FB035-09AN] gi|302482094|gb|EFL45129.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella disiens FB035-09AN] Length = 179 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 8/172 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ V+ + + + +L+F AGL+ LL F+ + +Y G Sbjct: 5 IIFAILAVVILGSAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAAQISIYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 + V ++F I ++ + KR L I A ++ VF+ ++ Sbjct: 65 ITVMYIFAIQLVSKRTLQGLSERWLGKRTLLAGIIALIGAGTVLGVFVKNKVFAELVSIN 124 Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + ++ IGK L + Y P E LL +IG +V++ ++ Sbjct: 125 ATSTEVP-MQVIGKNLMSADKYGYVLPFEFISVFLLACIIGGLVILNNRNKE 175 >gi|289474449|gb|ADC97837.1| NADH dehydrogenase subunit 6 [Corallium secundum] Length = 154 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGTHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLR---------HRRDIKRQDISKQLESN 183 L++M+GAI+L + H RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPSLYDSHVETRSRQDLFLQISRK 152 >gi|302536207|ref|ZP_07288549.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sp. C] gi|302445102|gb|EFL16918.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces sp. C] Length = 212 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 2/162 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ + VT + +++ L+ A A +LLL AEF+A + +++Y+G Sbjct: 29 EIAFLLVGLATLGAAVITVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYLG 88 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + A +V + +L Sbjct: 89 SVVVLLLFGLMLTKAPIGRSPDADSGNRWVALGVAGAAGAALVWVVADAFRTTWIDLDGP 148 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + + G++L+ + P E +LL ++IGAIVL R Sbjct: 149 AQ--GSTKVSGEILFQHWVLPFEALSVLLLAALIGAIVLSRR 188 >gi|292385516|gb|ADE22060.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis] gi|292385520|gb|ADE22063.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis] Length = 311 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI S+ Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVISS 110 >gi|145592967|ref|YP_001157264.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora tropica CNB-440] gi|145302304|gb|ABP52886.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Salinispora tropica CNB-440] Length = 187 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 5/147 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +A+ S L V R+ + + L+ AG++L+L AE VA + ++ Sbjct: 1 MTAADALLLALGALAVGSGALAVATRHLVRAGLYLVVCLAAVAGMYLVLTAELVAWVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGAV+V LF +M+ I + + G+ + G L + +S Sbjct: 61 IYVGAVVVLLLFAVMLTRAPIGASTDLDRPGWPAALIGGGTGLGLAALLVDAYRWS---- 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147 S + + E IG+ ++ + P E Sbjct: 117 -SVPLPTAGSAERIGEQIFGSWVLPFE 142 >gi|319412295|gb|ADV41832.1| NADH dehydrogenase subunit 6 [Bigelowiella natans] Length = 193 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 13/191 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L + +IS+ LV+ RN +Y++ L+ F +A L + +G EF+ + +VVYVGA+ + Sbjct: 3 LLAIFTLISATLVLISRNIVYALAFLVTTFFLSAVLLINIGLEFLGYVLIVVYVGAIAIL 62 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-----------FMVFSAE 118 FLF++M LDI E + R G + A + F FS Sbjct: 63 FLFVVMTLDITNEELASSQVRNSGGYTSHTVALAFFFFVLWSIYSTAAPIDALFEKFSFI 122 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + V + + LYT L ++G +LL++M+GA++L L R QD K Sbjct: 123 QDPWVPVLHSGGAGAVAQTLYTHNFLYLFLAGLLLLVAMVGAVLLALPPVRLS--QDSYK 180 Query: 179 QLESNPDNSIV 189 Q P ++ Sbjct: 181 QAHRQPAKAVK 191 >gi|313679594|ref|YP_004057333.1| NADH dehydrogenase subunit j [Oceanithermus profundus DSM 14977] gi|313152309|gb|ADR36160.1| NADH dehydrogenase subunit J [Oceanithermus profundus DSM 14977] Length = 185 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 1/144 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + I S+ VT++N +++ +L+ F+ A ++ L A+F+ I ++VY GAV+V Sbjct: 7 IAGVLLIASALAAVTLKNAVHAGLALVGNFLVLATVYFALEAQFLGWIQIIVYAGAVMVL 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 FLF+IM+L D + + ++ + A + A F L+ + G Sbjct: 67 FLFVIMLL-FDAKADVGAGRMPWMRPIAAALAAVFFLALAYAFSGVGPVHPLAEIKLAGG 125 Query: 130 NVENIGKVLYTQYAYPLEISGFIL 153 +G++LY + Y + + +L Sbjct: 126 LPGPLGQLLYGPWLYVVLLIAVLL 149 >gi|268164103|ref|YP_003288880.1| NADH dehydrogenase subunit 6 [Saccharina coriacea] gi|226235426|dbj|BAH47628.1| NADH dehydrogenase subunit 6 [Saccharina coriacea] gi|262318413|dbj|BAI48732.1| NADH dehydrogenase subunit 6 [Saccharina coriacea] Length = 311 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 51/100 (51%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 + V LF++MMLD+ + K+ L I A L Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGAFIFAFFL 104 >gi|58045478|gb|AAW65066.1| NADH dehydrogenase subunit 6 [Saccharina gyrata] Length = 311 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIV 107 + V LF++MMLD I+ + +K+ +LG+ + +I Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFAFFLSAVIY 109 >gi|57923560|gb|AAW59520.1| NADH dehydrogenase subunit 6 [Pterygophora californica] gi|58045448|gb|AAW65051.1| NADH dehydrogenase subunit 6 [Pterygophora californica] Length = 311 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVQVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFVLFLIAAIYS 110 >gi|319760608|ref|YP_004124546.1| NADH-quinone oxidoreductase subunit J [Candidatus Blochmannia vafer str. BVAF] gi|318039322|gb|ADV33872.1| NADH-quinone oxidoreductase subunit J [Candidatus Blochmannia vafer str. BVAF] Length = 189 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 7/174 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + FY+ ++I+++ V+ N ++S+ L+ + ++ + L A FV I ++VY Sbjct: 1 MMVVLFYISGCVSILATICVIFNNNTVHSLLYLVLSLLSVSLNLFSLKASFVGAIEVIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V FLF+IMMLDID K G L L + + F++ + G + Sbjct: 61 AGAIMVLFLFVIMMLDIDSVTINFDNKTGESFLLKKFNLGVSLFMSSLLFVLLYSIGRID 120 Query: 123 RLVFKGNN----VENIGKVLY---TQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 N V+ IG L+ +Y +EI+ +LL ++I + + + Sbjct: 121 NCFINIKNGAISVKQIGITLFGGNGEYILVVEIASLLLLGALISVLHIAQESKT 174 >gi|307327970|ref|ZP_07607151.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces violaceusniger Tu 4113] gi|306886275|gb|EFN17280.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces violaceusniger Tu 4113] Length = 194 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 2/143 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ L VT + +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 21 EIAFLLVGIATLGAAVLTVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVG 80 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + AA ++V + EL + Sbjct: 81 SVVVLLLFGLMLTKAPIGPSPDADSGNRPAALAVAVAAAGVLVWVVVDAFRTTWIELDKG 140 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 V V G+ L+ + P E Sbjct: 141 VQGSTAVS--GESLFRHWVLPFE 161 >gi|268164064|ref|YP_003288829.1| NADH dehydrogenase subunit 6 [Saccharina angustata] gi|58045482|gb|AAW65068.1| NADH dehydrogenase subunit 6 [Saccharina angustata] gi|226235356|dbj|BAH47625.1| NADH dehydrogenase subunit 6 [Saccharina angustata] gi|262318374|dbj|BAI48694.1| NADH dehydrogenase subunit 6 [Saccharina angustata] Length = 311 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 51/100 (51%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 + V LF++MMLD+ + K+ L I A L Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFAFFL 104 >gi|57923584|gb|AAW59538.1| NADH dehydrogenase subunit 6 [Pelagophycus porra] gi|58045460|gb|AAW65057.1| NADH dehydrogenase subunit 6 [Pelagophycus porra] Length = 311 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 51/106 (48%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFIIIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I L + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGSLIFCFVLFAAIYS 110 >gi|58045484|gb|AAW65069.1| NADH dehydrogenase subunit 6 [Saccharina sessilis] Length = 311 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 51/100 (51%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 + V LF++MMLD+ + K+ L I A L Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFAFCL 104 >gi|187373198|ref|YP_001876510.1| NADH dehydrogenase subunit 6 [Beauveria bassiana] gi|164598942|gb|ABY61760.1| NADH dehydrogenase subunit 6 [Beauveria bassiana] Length = 212 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 30/191 (15%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +A++ V+ +NPI S+ LI F + + +L G F+ L+VY+GAV Sbjct: 17 FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114 + FLFI+M+++I + + FIGIL + + + Sbjct: 77 SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136 Query: 115 ------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156 F + + +++ IG +LYT Y L +S ILLL+ Sbjct: 137 NYNNILPTVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196 Query: 157 MIGAIVLMLRH 167 M GAI++ ++ Sbjct: 197 MTGAIIITIKQ 207 >gi|329765839|ref|ZP_08257405.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137682|gb|EGG41952.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Nitrosoarchaeum limnia SFB1] Length = 170 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F S + I S+ + +R+ IY +L+ AG FLLL + FVAM L VY Sbjct: 1 MADVTFLALSVITIGSAIAALEMRSLIYGSIALMGTLGGIAGFFLLLDSPFVAMFQLAVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VG++ V LF +M++ ++ + KR F+GI + + A ++ + + Sbjct: 61 VGSIAVLILFTVMLVKRELIFKKIEDKRRK----FVGIALMLVFMVALGSIIMDSGIKSI 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + NIG T Y L + IL S+ GA+VL R Sbjct: 117 TTNEPAVDFRNIGADFLTYYWPALILMALILTGSVTGALVLARRE 161 >gi|156122204|gb|ABU50164.1| NADH dehydrogenase subunit 6 [Cordyceps bassiana] Length = 212 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 30/194 (15%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +A++ V+ +NPI S+ LI F + + +L G F+ L+VY+GAV Sbjct: 17 FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114 + FLFI+M+++I + + FIGIL + + + Sbjct: 77 SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136 Query: 115 ------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156 F + + +++ IG +LYT Y L +S ILLL+ Sbjct: 137 NYNNILPTVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196 Query: 157 MIGAIVLMLRHRRD 170 M GAI++ ++ Sbjct: 197 MTGAIIITIKQESR 210 >gi|57923548|gb|AAW59511.1| NADH dehydrogenase subunit 6 [Alaria sp. LL02FI] Length = 311 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALIFVFFLIAAIYS 110 >gi|107735872|ref|YP_626459.1| NADH dehydrogenase subunit 6 [Metarhizium anisopliae] gi|57904574|gb|AAW58829.1| NADH dehydrogenase subunit 6 [Metarhizium anisopliae] Length = 225 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 41/204 (20%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +A++ V+ +NPI S+ SLI F + + +L G F+ L+VY+GAV Sbjct: 19 FLDIISVIALLFGIAVIVNKNPIASLLSLIGLFGSISVYLILSGLTFIGFSYLIVYIGAV 78 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-------------- 112 + FLFI+M+L+I + + FI IL + + Sbjct: 79 SILFLFILMLLNIRTSELQSNNVNSIPLALFITILFNYALFQLLPYYMAILNSYNSKLSN 138 Query: 113 ---------------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145 ++F + + +++ IG +LYT Y Sbjct: 139 ILYYLPTSKYSDIIMNTNSNLDIDTHNIMFVTSNSWDGTITETSHISTIGNILYTSYNMW 198 Query: 146 LEISGFILLLSMIGAIVLMLRHRR 169 L + ILL+ M+GAI++ ++ Sbjct: 199 LFLVSIILLVVMVGAIIITIKQET 222 >gi|292385564|gb|ADE22096.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 50/104 (48%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + V LF++MMLD+ K+ I + LI Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVI 108 >gi|292385556|gb|ADE22090.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 50/104 (48%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + V LF++MMLD+ K+ I + LI Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVI 108 >gi|268053559|ref|YP_003288918.1| NADH dehydrogenase subunit 6 [Saccharina japonica] gi|268053598|ref|YP_003288956.1| NADH dehydrogenase subunit 6 [Saccharina religiosa] gi|268053637|ref|YP_003288994.1| NADH dehydrogenase subunit 6 [Saccharina ochotensis] gi|268053676|ref|YP_003289071.1| NADH dehydrogenase subunit 6 [Saccharina diabolica] gi|226235325|dbj|BAH47633.1| NADH dehydrogenase subunit 6 [Saccharina japonica] gi|262318179|dbj|BAI48504.1| NADH dehydrogenase subunit 6 [Saccharina japonica] gi|262318218|dbj|BAI48542.1| NADH dehydrogenase subunit 6 [Saccharina religiosa] gi|262318257|dbj|BAI48580.1| NADH dehydrogenase subunit 6 [Saccharina ochotensis] gi|262318296|dbj|BAI48618.1| NADH dehydrogenase subunit 6 [Saccharina diabolica] Length = 311 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 52/100 (52%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSTISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 + V LF++MMLD+ + K+ L F I A L Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYFGALIFAVFL 104 >gi|292385513|gb|ADE22058.1| NADH dehydrogenase subunit 6 [Lessonia tholiformis] Length = 286 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI S+ Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVISS 110 >gi|292385568|gb|ADE22099.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 50/104 (48%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + V LF++MMLD+ K+ I + LI Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVI 108 >gi|292385552|gb|ADE22087.1| NADH dehydrogenase subunit 6 [Lessonia variegata] gi|292385560|gb|ADE22093.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 50/104 (48%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + V LF++MMLD+ K+ I + LI Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVI 108 >gi|58045476|gb|AAW65065.1| NADH dehydrogenase subunit 6 [Laminaria ephemera] Length = 309 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 57/119 (47%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + V LF++MMLD+ + K+ L I LI + + S LS + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLFYLGALIFLVFLIAAIYSKDLQSLMNILSTV 123 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N++ +K K Sbjct: 240 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEKP 295 >gi|289474488|gb|ADC97863.1| NADH dehydrogenase subunit 6 [Sibogagorgia dennisgordoni] Length = 153 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 15/158 (9%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRRDI--------KRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPSLYSHVEIRSRQDLFLQISRK 151 >gi|317123874|ref|YP_004097986.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043] gi|315587962|gb|ADU47259.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043] Length = 172 Score = 85.1 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F + + + + L VT + +++ L+ + AG +++LG E V ++ L+ Sbjct: 1 MTSREIAFLIVGTITALCAILAVTTKQVVHAALWLLVSLGALAGAYVVLGQELVGIVQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGA++V LF +M+ I + + A + A+ + A Sbjct: 61 VYVGAIVVLVLFALMLTRAPIGRHSEIDTPRWERVLASALGGATTALLAAVLLPMFASAR 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147 L+ IG+ ++ + +P E Sbjct: 121 LAEDAPATP---AIGEAIFGTWVWPFE 144 >gi|328950040|ref|YP_004367375.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Marinithermus hydrothermalis DSM 14884] gi|328450364|gb|AEB11265.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Marinithermus hydrothermalis DSM 14884] Length = 187 Score = 85.1 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 SLF + + I+++ VVT+RN +++ +L F+ A +++ L A F+ I ++VY G Sbjct: 2 SLFDLVAGLLLILTAVAVVTLRNAVHAALALAGNFLVLAAVYMALDARFLGWIQVIVYAG 61 Query: 65 AVIVFFLFIIMML--DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 A++V FLF+IM+L +P +L L + F + E + Sbjct: 62 AIMVLFLFVIMLLLAARADTGVDPVPSLRPFAGVVGVLLLVGLGYAVTTFEPVQSLVETA 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEIS 149 L G + +G+ LY + Y +E+ Sbjct: 122 PL-LAGGTAQVVGEALYGPWLYAVELI 147 >gi|197935768|ref|YP_002213611.1| NADH dehydrogenase subunit 6 [Cordyceps brongniartii] gi|156122225|gb|ABU50184.1| NADH dehydrogenase subunit 6 [Cordyceps brongniartii] Length = 212 Score = 85.1 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 30/191 (15%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + S +A++ V+ +NPI S+ LI F + + +L G F+ L+VY+GAV Sbjct: 17 FLDILSVIAVLFGITVIINKNPIGSLLFLIGLFASISVYLILSGLTFIGFSYLIVYIGAV 76 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114 + FLFI+M+++I + + FIGIL + + + Sbjct: 77 SILFLFILMLINIRTSELQSNNVNSIPLALFIGILWNYSLFQLLPYTLSINTNNWLLGSY 136 Query: 115 ------------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156 F + + +++ IG +LYT Y L +S ILLL+ Sbjct: 137 NYNNILPIVNNIDTSNIMFVTSNNWDGTMTETSHISTIGNILYTSYNMWLFLSSIILLLA 196 Query: 157 MIGAIVLMLRH 167 M GAI++ ++ Sbjct: 197 MTGAIIITIKQ 207 >gi|289474443|gb|ADC97833.1| NADH dehydrogenase subunit 6 [Corallium laauense] Length = 154 Score = 85.1 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + S ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYISSPVIGSKTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRK 152 >gi|292385524|gb|ADE22066.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae] gi|292385528|gb|ADE22069.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae] gi|292385532|gb|ADE22072.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae] gi|292385536|gb|ADE22075.1| NADH dehydrogenase subunit 6 [Lessonia adamsiae] Length = 311 Score = 85.1 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 51/106 (48%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFIFFLIAVIYS 110 >gi|309812378|ref|ZP_07706133.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dermacoccus sp. Ellin185] gi|308433683|gb|EFP57560.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dermacoccus sp. Ellin185] Length = 170 Score = 85.1 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 3/173 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F ++ S+ VT R +++ L +G +L+LGAE VA++ L+ Sbjct: 1 MTVHDALFACLGLISAASAICAVTTRQIVHAALWLTVCLATLSGCYLVLGAELVALVQLL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V LF +M+ I + + I AA + S F+ + Sbjct: 61 VYVGAVVVLVLFAVMLTRAPIGRSGDHDAPIMTRMAALVIAAATGGLLFSAFV---SAFG 117 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 R ++ + L+ ++A+P E+ +LL +++GA+ ++ R R Sbjct: 118 TRRARIDSGTTTDLAQNLFGRFAWPFEVVSLVLLSALVGALAMIGSRRSGGGR 170 >gi|268053715|ref|YP_003289122.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis] gi|226235329|dbj|BAH47635.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis] gi|262318335|dbj|BAI48656.1| NADH dehydrogenase subunit 6 [Saccharina longipedalis] Length = 311 Score = 85.1 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 53/100 (53%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS F L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGFYLVLLFFLGSTISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 + V LF++MMLD+ + K+ L F I A L Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYFGALIFAVFL 104 >gi|289474446|gb|ADC97835.1| NADH dehydrogenase subunit 6 [Corallium sp. USNM 1075800] Length = 154 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYISNPVIGSKTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRK 152 >gi|18860372|ref|NP_569688.1| NADH dehydrogenase subunit 6 [Psilotum nudum] gi|75248907|sp|Q8WHX6|NU6C_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|18389525|dbj|BAB84277.1| NADH dehydrogenase ND6 subunit [Psilotum nudum] Length = 188 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 9/137 (6%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 S V+ + + + S FSL F++ + L+L+L A+FVA +++YVGA+ V +F +M++ Sbjct: 23 SMGVILLNDIVQSAFSLGLTFISISLLYLVLNADFVAAAQVLIYVGAINVLIVFSVMLIQ 82 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL--------VFKGNN 130 + + R G+ I+ L + + ++ ++ ++ + +N Sbjct: 83 KPHKNEDLSTSRN-TGNNITLIVCTSLFLFLVSIILDTSWSQIYSIKKSTKIFEPILKSN 141 Query: 131 VENIGKVLYTQYAYPLE 147 V+ IG L T++ P E Sbjct: 142 VQLIGSQLLTEFLLPFE 158 >gi|239943532|ref|ZP_04695469.1| putative NADH dehydrogenase chain J [Streptomyces roseosporus NRRL 15998] gi|239989986|ref|ZP_04710650.1| putative NADH dehydrogenase chain J [Streptomyces roseosporus NRRL 11379] gi|291446999|ref|ZP_06586389.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces roseosporus NRRL 15998] gi|291349946|gb|EFE76850.1| NADH dehydrogenase subunit NuoJ2 [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 2/143 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 26 EIAFLLVGLATLGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 85 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +++V LF +M+ I + + + + +A +V + +L Sbjct: 86 SIVVLLLFGLMLTRAPIGRSPDADSGNRWVALGVALASAAALVWVVVDAFRTTWIDLDGP 145 Query: 125 VFKGNNVENIGKVLYTQYAYPLE 147 + G L+ + P E Sbjct: 146 AQ--GSTRVTGAFLFRNWVLPFE 166 >gi|58045470|gb|AAW65062.1| NADH dehydrogenase subunit 6 [Laminaria digitata] Length = 311 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGAIIFLFFLIAAIYS 110 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N+I +K KS Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAIFSIKEKS 297 >gi|21450018|ref|NP_659280.1| NADH dehydrogenase subunit 6 [Laminaria digitata] gi|21425343|emb|CAC87976.1| NADH dehydrogenase subunit 6 [Laminaria digitata] Length = 311 Score = 84.7 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGAIIFLFFLIAAIYS 110 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N+I +K KS Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAIFSIKEKS 297 >gi|292385540|gb|ADE22078.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia] Length = 311 Score = 84.7 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 51/106 (48%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVIYS 110 >gi|292385437|gb|ADE22001.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 84.7 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFWGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + V LF++MMLD+ IE KK+ FL + + V S Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110 >gi|58045434|gb|AAW65044.1| NADH dehydrogenase subunit 6 [Chorda filum] Length = 311 Score = 84.7 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 53/106 (50%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + L +F+ + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIYILITFLGVCLGIKVTSTQNPVYSGLYLVLLFFLGSAIAFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ L A LI + Sbjct: 65 IAVLVLFVVMMLDVKAIEKPWSAKKKRLLYLVGVFFAFGLISVMLS 110 >gi|57923552|gb|AAW59514.1| NADH dehydrogenase subunit 6 [Lessoniopsis littoralis] gi|58045446|gb|AAW65050.1| NADH dehydrogenase subunit 6 [Lessoniopsis littoralis] Length = 311 Score = 84.7 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L + LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGALMFVLFLIAAIYS 110 >gi|292385548|gb|ADE22084.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia] Length = 311 Score = 84.7 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 51/106 (48%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVIYS 110 >gi|292385429|gb|ADE21995.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] gi|292385433|gb|ADE21998.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 84.7 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFLLIATLGGTLGVKVTSTQNPVYSGLYLVLLFFWGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + V LF++MMLD+ IE KK+ FL + + V S Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110 >gi|58045486|gb|AAW65070.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 84.7 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + V LF++MMLD+ IE KK+ FL + + V S Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110 >gi|292385441|gb|ADE22004.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 84.3 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + V LF++MMLD+ IE KK+ FL + + V S Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110 >gi|289474458|gb|ADC97843.1| NADH dehydrogenase subunit 6 [Paracorallium sp. USNM 1089600] Length = 154 Score = 84.3 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +P K Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQ------QPNKVYYQD 54 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 S F+ + +I + + S + + ++ N+ IG LYT Y + ++ +L Sbjct: 55 HSHFLPV-GLSVIFLFYSLLTNSPKYISNPVIGSRTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRK 152 >gi|58045462|gb|AAW65058.1| NADH dehydrogenase subunit 6 [Egregia menziesii] Length = 311 Score = 84.3 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSLISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L + I L + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGVLIFVFFLSAIIYS 110 >gi|58045468|gb|AAW65061.1| NADH dehydrogenase subunit 6 [Laminaria sinclairii] Length = 311 Score = 84.3 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFIIIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSVKKKRLLYLGAIIFIFFLIAAIYS 110 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N+I +K KS Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAIFSIKEKS 297 >gi|317123854|ref|YP_004097966.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043] gi|315587942|gb|ADU47239.1| NADH dehydrogenase subunit J [Intrasporangium calvum DSM 43043] Length = 304 Score = 84.3 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 75/154 (48%), Gaps = 7/154 (4%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S FF++ + +A+ ++ +V R +++ + +L+ A+F+ ++ + VY Sbjct: 6 ESAFFWVLAPLAVAAALALVFARKAVHAAIGMAITMTILGVFYLMQKADFLGVVQVFVYT 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRG------FLGSFFIGILAAELI-VCASNFMVFS 116 GAV++ FLF+IM++ +D + +G L IG+L++ + V S Sbjct: 66 GAVMMLFLFVIMLVGVDSSDSLVETIKGHRWLSIILAVGLIGLLSSTIGSASFDEATVQS 125 Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISG 150 +L + N+ + ++++ QY + E++ Sbjct: 126 GIDKLEASNAQTGNITGMAELIFGQYVWIFEVTS 159 >gi|157736567|ref|YP_001489250.1| NADH-quinone oxidoreductase, J subunit [Arcobacter butzleri RM4018] gi|315635730|ref|ZP_07890993.1| NADH-quinone oxidoreductase subunit J [Arcobacter butzleri JV22] gi|157698421|gb|ABV66581.1| NADH-quinone oxidoreductase, J subunit [Arcobacter butzleri RM4018] gi|315480027|gb|EFU70697.1| NADH-quinone oxidoreductase subunit J [Arcobacter butzleri JV22] Length = 173 Score = 84.3 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 1/145 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F +F AI + ++ +NP++S ++ ++ AG+F LL A F+ ++ ++VY Sbjct: 1 MVDLIFIALAFFAITGAIAMIVYKNPMFSALGVLITMLSVAGMFALLNATFLFLVQIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++ LFI+M L+I E + L + ++ L V + + + + Sbjct: 61 AGAIMTLILFILMFLNIKEEDLPHEPNKYKLIAL-GAVIMIPLNVLVLKAVSNLPQKDFN 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLE 147 + +++ +G LY + E Sbjct: 120 IVQGDFGDIKPVGIELYNHWIVAFE 144 >gi|292385461|gb|ADE22019.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata] gi|292385465|gb|ADE22022.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata] Length = 311 Score = 84.3 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + V LF++MMLD+ IE KK+ FL + + V S Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110 >gi|58045480|gb|AAW65067.1| NADH dehydrogenase subunit 6 [Saccharina latissima] gi|226235350|dbj|BAH47623.1| NADH dehydrogenase subunit 6 [Laminaria sachalinensis] Length = 311 Score = 84.3 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 48/91 (52%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF 96 + V LF++MMLD+ + K+ L Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYL 95 >gi|58045472|gb|AAW65063.1| NADH dehydrogenase subunit 6 [Laminaria yezoensis] gi|226235344|dbj|BAH47621.1| NADH dehydrogenase subunit 6 [Laminaria yezoensis] Length = 311 Score = 84.3 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGGLIFLFFLIAAIYS 110 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N++ +K KS Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEKS 297 >gi|58045488|gb|AAW65071.1| NADH dehydrogenase subunit 6 [Lessonia corrugata] gi|292385505|gb|ADE22052.1| NADH dehydrogenase subunit 6 [Lessonia corrugata] gi|292385509|gb|ADE22055.1| NADH dehydrogenase subunit 6 [Lessonia corrugata] Length = 311 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 51/104 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLIFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + V LF++MMLD+ K+ I + LI Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVFFLIAVI 108 >gi|292385445|gb|ADE22007.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] gi|292385449|gb|ADE22010.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 50/106 (47%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + I + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFFYLGILLFFFFSIAVIYS 110 >gi|305666191|ref|YP_003862478.1| NADH dehydrogenase I subunit J [Maribacter sp. HTCC2170] gi|88707689|gb|EAQ99930.1| NADH dehydrogenase I, chain J [Maribacter sp. HTCC2170] Length = 174 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 9/156 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + FY+ + + I+ + VT R + SV L+F AG++ L+ F+A I L VY Sbjct: 1 MERIIFYVLAIIMIVFAIASVTSRKMLRSVIYLLFVLCGIAGIYFLIDYNFLAAIQLTVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 G +IV +F ++++ E K + + +L + + ++ E + Sbjct: 61 AGGIIVLIIFSVLLVHHIEMELEIAKTSKQILTAVACLLGLGVFLT----TIYGHEFNVV 116 Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILL 154 +IG L + + P E+ +LL Sbjct: 117 ENALT-TTTADIGAKLLSYGEGGFILPFEVISVLLL 151 >gi|292385607|gb|ADE22128.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 50/106 (47%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILFFVFFLIAVIYS 110 >gi|292385469|gb|ADE22025.1| NADH dehydrogenase subunit 6 [Lessonia trabeculata] Length = 311 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + V LF++MMLD+ IE KK+ FL + + V S Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFFFFSIAVIYS 110 >gi|84508621|ref|YP_448668.1| NADH dehydrogenase subunit 6 [Desmarestia viridis] gi|45925653|gb|AAS79054.1| NADH dehydrogenase subunit 6 [Desmarestia viridis] Length = 311 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 50/106 (47%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFIFIAILGGSLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ L L+V N Sbjct: 65 IAVLVLFVVMMLDVKAIENPWSAKKKRLLYISALFFGWILLVVGYN 110 >gi|115304399|ref|YP_762704.1| NADH:ubiquinone oxidoreductase subunit 6 [Ustilago maydis] gi|121924030|sp|Q0H8W8|NU6M_USTMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|72256229|gb|AAZ67019.1| NADH:ubiquinone oxidoreductase subunit 6 [Ustilago maydis] Length = 226 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + A++S LV+T +NP+ SV LI FVN AG +LLG F+ + L+VY Sbjct: 1 MNNFLLDFLALGAVLSGILVITSKNPVISVLFLISVFVNVAGYLVLLGVGFIGISYLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 +GAV V FLF+IMML++ + V K L + +L EL+ +F F Sbjct: 61 IGAVTVLFLFVIMMLNLQLTELSAVGNEYTKNLPLATIIGSLLLFELVSVVPSFDGFYQL 120 Query: 119 GELSRL 124 + + Sbjct: 121 NSTTTI 126 >gi|156494382|ref|YP_001427408.1| NADH dehydrogenase subunit 6 [Phaeosphaeria nodorum SN15] gi|156106289|gb|ABU49452.1| NADH dehydrogenase subunit 6 [Phaeosphaeria nodorum SN15] Length = 198 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 16/179 (8%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L +AI+ LV+ +NPI SV LI F+ + +L G F+ + L+VY+GAV + Sbjct: 20 LLYLIAILLGILVIISKNPIVSVLFLIGLFLCISVYLILTGLNFIGLSYLLVYIGAVSIL 79 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS------------- 116 FLFI+M++++ I + +G + +MV + Sbjct: 80 FLFILMLINVRISELLIDSINSIPLAILVGSFFNYFVNNVLPYMVMTNNLLYHFSIKKNL 139 Query: 117 ---AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIK 172 + + +++ +IG +LY Y+ L I+ ILLL+M+GAIV+ L+ + +K Sbjct: 140 TNVTSVSWDGYLAETSHITSIGNILYGHYSIWLIITSIILLLAMVGAIVITLKPQTHVK 198 >gi|289474467|gb|ADC97849.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora] Length = 154 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ + Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKADYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYISDPVIGYRTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPSLYESHVEIRSRQDLFLQISRK 152 >gi|288801148|ref|ZP_06406604.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 299 str. F0039] gi|288332082|gb|EFC70564.1| NADH dehydrogenase I, subunit 6 [Prevotella sp. oral taxon 299 str. F0039] Length = 174 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 72/171 (42%), Gaps = 7/171 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ + VT + + + L+F AG++ LLG F+ + +Y G Sbjct: 5 IMFCILAVIILGSAIVCVTTKRIMRAATFLLFVLFGVAGIYFLLGYTFLGAAQISIYAGG 64 Query: 66 VIVFFLFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 + + ++F I ++ + E + LG + ++ + + F Sbjct: 65 ITMVYIFAIQLVSKRTLQGLQESFSLKKSLGGVLVALVGLVMFLVIFAKNEFIGNVVDLG 124 Query: 124 LVFKGNNVENIGKVLY----TQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 L + + + +G L QYA P E+ LL +IG +++ + + Sbjct: 125 LANEVS-MHEVGTTLIGTDKGQYALPFELISVFLLACIIGGVMIARKEDKK 174 >gi|289474464|gb|ADC97847.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora] gi|289474470|gb|ADC97851.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora] gi|289474491|gb|ADC97865.1| NADH dehydrogenase subunit 6 [Sibogagorgia cauliflora] Length = 154 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYISDPVIGYRTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPSLYDSHVEIRSRQDLFLQISRK 152 >gi|218660274|ref|ZP_03516204.1| probable NADH-ubiquinone oxidoreductase protein, chain J [Rhizobium etli IE4771] Length = 121 Score = 83.5 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 1/122 (0%) Query: 48 LLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +L A F+A+I + VYVGA++V FLF+IMM+D+ V + G L + + ++ ++ Sbjct: 1 MLEAPFLAVIQIFVYVGAIMVLFLFVIMMIDVREAVLQRFLPGGNLLALMLVVVLGLEML 60 Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + E + G+ + + L+ Y P EI+ ILL +++GAIVL + Sbjct: 61 VLVLWSDRFSVIE-PVAMRGGDQIRQLSTTLFADYLLPFEIASVILLAALVGAIVLARKE 119 Query: 168 RR 169 + Sbjct: 120 QE 121 >gi|58045474|gb|AAW65064.1| NADH dehydrogenase subunit 6 [Laminaria solidungula] Length = 311 Score = 83.5 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLGSLIFIFFLIAAIYS 110 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N++ +K K Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEKP 297 >gi|57923544|gb|AAW59508.1| NADH dehydrogenase subunit 6 [Alaria sp. LL01AP] gi|57923568|gb|AAW59526.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia] gi|58045458|gb|AAW65056.1| NADH dehydrogenase subunit 6 [Macrocystis integrifolia] Length = 311 Score = 83.5 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFIIIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRLLYLVFLIFVLFLISAIYS 110 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N++ +K K Sbjct: 242 ILYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFFIKEKP 297 >gi|289474455|gb|ADC97841.1| NADH dehydrogenase subunit 6 [Paragorgia aotearoa] Length = 154 Score = 83.5 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRR---------DIKRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPPLYHPHVGTHSRQDLFLQISRK 152 >gi|161527790|ref|YP_001581616.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Nitrosopumilus maritimus SCM1] gi|160339091|gb|ABX12178.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosopumilus maritimus SCM1] Length = 170 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F + + I S+ + +R+ +Y +L+ AG F LL A FVA+ L VY Sbjct: 1 MADAAFLALTVITIGSAIAALELRSLVYGSIALMGTLGGIAGFFFLLDAPFVALFQLAVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VG++ V LF +M++ ++ + KR F GI +I+ A + + + Sbjct: 61 VGSIAVLILFTVMLVKRELIFKKIEDKRRK----FAGIGLMLVIMVALGAVFLDSGIKTI 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + +IG T Y L + G IL S+ GA+VL R Sbjct: 117 TTDEPPVDFRDIGTDFVTYYWPALILMGLILAGSVTGALVLAKRE 161 >gi|189220226|ref|YP_001940866.1| NADH dehydrogenase subunit J [Methylacidiphilum infernorum V4] gi|189187084|gb|ACD84269.1| NADH dehydrogenase subunit J [Methylacidiphilum infernorum V4] Length = 135 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 2/134 (1%) Query: 33 FSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92 +L+ ++ AGLF+LLGA F+A + ++VY GAV+V FLFIIM+LD+ E + G Sbjct: 1 MNLVLMILSIAGLFVLLGAYFLAAVQVLVYAGAVMVLFLFIIMLLDLKAEEQATMRPLGM 60 Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152 LG F + +L A M S E L G ++ +G++L+ Y+ E+ G + Sbjct: 61 LGGFLLVLLFGVGFSLAVKAMDSSLSKEQKALGVGG--IKALGELLFANYSLAFEVVGLL 118 Query: 153 LLLSMIGAIVLMLR 166 LL+SM+G I+L + Sbjct: 119 LLISMVGVIILSKK 132 >gi|289474482|gb|ADC97859.1| NADH dehydrogenase subunit 6 [Paragorgia wahine] Length = 154 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ + Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKADYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRR---------DIKRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPPLYHPHVGTHSRQDLFLQISRK 152 >gi|303248407|ref|ZP_07334667.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio fructosovorans JJ] gi|302490205|gb|EFL50123.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio fructosovorans JJ] Length = 173 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 5/152 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FYL S + +I++ L T RNP+++V + F+ AGLF++LGA ++ +V Sbjct: 1 MTALGALFYLLSAVLLIAAGLAATRRNPVHAVCCAVVTFIATAGLFVVLGAPLPGVLEVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V FLFIIM+L + + V R + L V Sbjct: 61 VYAGAIMVLFLFIIMLLGLPVGVGAVPAARLVVPGVIAAATLVALFALIGVDPVGRVMLP 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152 + +G VL+ Y +E I Sbjct: 121 AALATPA-----AVGTVLFGTYWLAVEAVSII 147 >gi|319738248|emb|CBJ18024.1| NADH dehydrogenase subunit 6 [Ectocarpus siliculosus] Length = 305 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + S + I V + +NP+YS L+ F +G+ LLG EF+A++ L+VY GA Sbjct: 5 IIFIIISCLGAILGVKVTSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ L LI + Sbjct: 65 IAVLVLFVVMMLDVKAIENPWSAKKKRLVYAIGLTFLFFLIAVGWS 110 Score = 52.3 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVK 194 +LY+ YA L I+G ILL++M+GAI L L+ + + +QL N++ +K K Sbjct: 236 LLYSTYAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEK 290 >gi|289474476|gb|ADC97855.1| NADH dehydrogenase subunit 6 [Paragorgia arborea] Length = 154 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPSLYNPHVGTHSRQDLFLQISRK 152 >gi|289474461|gb|ADC97845.1| NADH dehydrogenase subunit 6 [Paragorgia regalis] gi|289474485|gb|ADC97861.1| NADH dehydrogenase subunit 6 [Paragorgia yutlinux] Length = 154 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRR---------DIKRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPPLYNPHVGTHSRQDLFLQISRK 152 >gi|57923564|gb|AAW59523.1| NADH dehydrogenase subunit 6 [Undaria pinnatifida] gi|58045452|gb|AAW65053.1| NADH dehydrogenase subunit 6 [Undaria pinnatifida] Length = 311 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 53/109 (48%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F L + I V + +NP+YS L+ F + + LLG EF+A++ L+VY Sbjct: 2 VNPIIFILIITLGSILGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 GA+ V LF++MMLD+ + K+ L I LI + Sbjct: 62 AGAIAVLVLFVVMMLDVKAIESPWSAKKKRLLYLSSLIFVIFLIAAIYS 110 >gi|325857141|ref|ZP_08172431.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella denticola CRIS 18C-A] gi|327313383|ref|YP_004328820.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella denticola F0289] gi|325483204|gb|EGC86182.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella denticola CRIS 18C-A] gi|326944974|gb|AEA20859.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella denticola F0289] Length = 179 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 73/172 (42%), Gaps = 7/172 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + + S+ V+ + + + +L+F AGL+ LL F+ + + +Y G Sbjct: 5 IMFAVLAVVILASAVFCVSTKRIMRAATALLFVLFGVAGLYFLLDYTFLGAVQISIYAGG 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 + + ++F I ++ + KR FL + + V + + Sbjct: 65 ITMMYIFAIQLVSKRTLQGLSERWLGKRTFLAAAIALAGLGTVTVVLLKNELIRSTVVNG 124 Query: 123 RLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + K +++ +G+ L + Y P E LL +IG +V++ +++ Sbjct: 125 DALSKEISMDVVGQTLMSADKYGYVLPFEFISVFLLACIIGGLVILNNKKKE 176 >gi|197245037|dbj|BAG69143.1| NADH dehydrogenase subunit 6 [Aureophycus aleuticus] Length = 311 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILITTLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L I LI + Sbjct: 65 IAVLVLFVVMMLDVKAIESPWFAKKKRLLYLGALIFVFFLIAVIYS 110 Score = 48.1 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+G I L L+ + + +QL N++ +K K Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGXISLTLQKN---CPESLYRQLGRESKNAVFSIKEKP 297 >gi|302559056|ref|ZP_07311398.1| NADH dehydrogenase subunit [Streptomyces griseoflavus Tu4000] gi|302476674|gb|EFL39767.1| NADH dehydrogenase subunit [Streptomyces griseoflavus Tu4000] Length = 210 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 2/162 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + ++ + VT R +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 31 EIAFLLVGLVTFGAAVITVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVG 90 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + AA +V + +L Sbjct: 91 SVVVLLLFGLMLTRAPIGRSPDADSGNRRVALAVAVAAAGALVWVVVDAFRTTWIDLDGA 150 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + E G L+ + P E +LL +++GAIVL R Sbjct: 151 PA--GSTEVTGASLFQNWVLPFEALSVLLLAALVGAIVLSRR 190 >gi|320105158|ref|YP_004180749.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Isosphaera pallida ATCC 43644] gi|319752440|gb|ADV64200.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Isosphaera pallida ATCC 43644] Length = 325 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 53/214 (24%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + ++F +FS A+ ++ ++ R+P++S ++ AGLFLL GA+F+A T++VY Sbjct: 66 ISAVFHTVFSLSAVAAAAAMIASRDPVHSALWFAVTVLSTAGLFLLAGAQFLAAGTVIVY 125 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 GA+IV FLF+IM+ R R + F + +L L+ G Sbjct: 126 AGAIIVMFLFVIMLAQQQGRATYDRMSRNPKAAVFGVSLLLWTLLYAILAARSAPPLGPS 185 Query: 122 SRLVF----------------------------------------------------KGN 129 Sbjct: 186 PEATAPLEARSAAVARGAAGSSDPADRIAQAALAPTARLAPTISVEQMLATLPAQANPPP 245 Query: 130 NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +V +G LY+ + + ++ +L +SM+GA+ + Sbjct: 246 HVAALGGTLYSDHVVSVLVAAALLFVSMVGAVAI 279 >gi|299737838|ref|XP_002910006.1| NADH dehydrogenase subunit 6 [Coprinopsis cinerea okayama7#130] gi|298402998|gb|EFI26512.1| NADH dehydrogenase subunit 6 [Coprinopsis cinerea okayama7#130] Length = 250 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++LF L +F ++SS L +T +NP+ SV LI FV+AAG +L+G +F+ + +V Sbjct: 1 MNIKTLFINLLAFGTLLSSILTITAKNPVISVIFLISTFVSAAGYLILIGIQFLGLSYIV 60 Query: 61 VYVGAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +YVGA+ V FLF+IMM++I DI + + + IG + +I +++ Sbjct: 61 IYVGAIAVLFLFVIMMINIKLTDILETGSQYTKNLPIAIIIGSVFLFIIFTIVPLNIYNV 120 Query: 118 EG 119 Sbjct: 121 PS 122 >gi|146307443|ref|YP_001187908.1| NADH dehydrogenase subunit J [Pseudomonas mendocina ymp] gi|145575644|gb|ABP85176.1| NADH dehydrogenase subunit J [Pseudomonas mendocina ymp] Length = 169 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 1/138 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY + +A+ ++ VVT NP++++ LI + + + +F LGA F + ++VY G Sbjct: 2 EFAFYFAAGVAVAATVGVVTNTNPVHALLYLIVSLLAVSMVFFALGAPFAGALEIIVYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ A ++++ +IG ++ V A+ + + Sbjct: 62 AIMVLFVFVVMMLNL-GPAAVDQERKWLAPGIWIGPALLSALLLGQLLYVLLAQPGDATI 120 Query: 125 VFKGNNVENIGKVLYTQY 142 + +G L+ Y Sbjct: 121 GHASVEAKAVGISLFGPY 138 >gi|289474473|gb|ADC97853.1| NADH dehydrogenase subunit 6 [Paragorgia arborea] Length = 154 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 + +I + + S + + ++ N+ IG LYT Y + ++ +L Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYIGNPVIGFRTNIGAIGSHLYTTYYELVLVASLVL 113 Query: 154 LLSMIGAIVLMLRHRRDI---------KRQDISKQLESN 183 L++M+GAI+L + RQD+ Q+ Sbjct: 114 LVAMVGAILLAKQPNTPSLYNPHVGIHSRQDLFLQISRK 152 >gi|146221440|gb|ABQ11840.1| NADH dehydrogenase subunit 6 [Iphiteon panicea] Length = 176 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 30 YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 YS LI F+N + LF+LL EF+A++ ++VY GA+ + FLF IMML++ + Sbjct: 24 YSAVWLILTFINISLLFILLEIEFIAILLIIVYAGAIAILFLFAIMMLNLHTKEQTSDST 83 Query: 90 RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 I ++ + + +N E I +LY+ Y IS Sbjct: 84 ----HLLPINATIIISVIIIGINSSSHKLYNTTPQIKTLDNTETISSLLYSNYTPWFLIS 139 Query: 150 GFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 ILL+SMI IV++ + + + +Q + KQ Sbjct: 140 SIILLISMIATIVIIQKEQINSIKQQLFKQ 169 >gi|292385477|gb|ADE22031.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] Length = 311 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 46/78 (58%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY Sbjct: 2 VEPIIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVY 61 Query: 63 VGAVIVFFLFIIMMLDID 80 GA+ V LF++MMLD+ Sbjct: 62 AGAIAVLVLFVVMMLDVK 79 >gi|58045492|gb|AAW65073.1| NADH dehydrogenase subunit 6 [Cymathaere triplicata] Length = 311 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGVLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ + K+ L L+ + Sbjct: 65 IAVLVLFVVMMLDVKAVESPWSAKKKRLLYLGALTFVFFLLATVYS 110 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N+I +K K Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAIFSIKEKP 297 >gi|58045464|gb|AAW65059.1| NADH dehydrogenase subunit 6 [Eisenia arborea] Length = 311 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 51/106 (48%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + V++ +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFIFIATFGGMLGIKVISTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ L I L+ + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSAKKKRLLYCGALIFLFFLVAVVYS 110 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N++ +K K Sbjct: 242 ILYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEKP 297 >gi|94265857|ref|ZP_01289587.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta proteobacterium MLMS-1] gi|94269627|ref|ZP_01291516.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta proteobacterium MLMS-1] gi|93451145|gb|EAT02072.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta proteobacterium MLMS-1] gi|93453593|gb|EAT03989.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [delta proteobacterium MLMS-1] Length = 173 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 3/166 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + F+ F + I + + N I +V L V AG++ LG+ F+A++ +++Y Sbjct: 10 LAGVVFFGFILLIIFGALVATNAVNLIRAVCGLALCLVGVAGIYYFLGSPFLALMQILIY 69 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV V +F +M+ A R R + L L+ + F Sbjct: 70 AGAVCVAIVFAVMLA---EPAAVQRFHRSHPLAGPGAALTGALMAWGLAALAFKTSWPSP 126 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 +E +G+ + T + E+ ILLL+++G++VL R R Sbjct: 127 PQRLNDGALEEVGRAMMTTFVVSFELISLILLLAIVGSLVLARRGR 172 >gi|315465332|emb|CBQ72567.1| NADH:ubiquinone oxidoreductase chain 6 [Sporisorium reilianum] Length = 226 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 90/210 (42%), Gaps = 44/210 (20%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + AI+S LV+T +NP+ SV LI FVN AG +LLG F+ + L+VY Sbjct: 1 MNNFLLDFLALGAILSGILVITSKNPVISVLFLISVFVNVAGYLVLLGVGFIGISYLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 VGAV V FLF+IMML++ + V + L + +L EL+ +F F Sbjct: 61 VGAVTVLFLFVIMMLNLQLTELSAVGNEYTQNLPLATILGSLLLFELVSVVPSFDGFYQL 120 Query: 119 GELSRLVFKGN----------------------------------------NVENIGKVL 138 + + ++ IG+VL Sbjct: 121 NSTATIFKSLGVGILNWFNSLSLGVENTFAFAEVNQTFNSFAADTQFATFLQIQTIGQVL 180 Query: 139 YTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 YT A L +S ILLL+M+G I L + + Sbjct: 181 YTNGALWLIVSSLILLLAMVGPITLSMNKK 210 >gi|297565705|ref|YP_003684677.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Meiothermus silvanus DSM 9946] gi|296850154|gb|ADH63169.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus silvanus DSM 9946] Length = 185 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 7/132 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 VVT RN +++ +LI F+ AG+++ L A F+ M+ ++VY GA++V FLF+IM+L Sbjct: 19 VVTARNAVHAALALIANFLVLAGVYVALDARFLGMVQVIVYAGAIVVLFLFVIMLLSAAQ 78 Query: 82 EV--AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 P + + + LA L++ + N V G L+ + + IG VLY Sbjct: 79 AEVGINPLSRLTPVAALGALALAVVLMLASRNVPVPPQVGNLNGGLP-----QAIGPVLY 133 Query: 140 TQYAYPLEISGF 151 + Y L GF Sbjct: 134 GPWLYALLAVGF 145 >gi|15616782|ref|NP_239994.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681537|ref|YP_002467922.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682093|ref|YP_002468477.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471218|ref|ZP_05635217.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11133972|sp|P57260|NUOJ_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|25285206|pir||H84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain J [imported] - Buchnera sp. (strain APS) gi|10038845|dbj|BAB12880.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621826|gb|ACL29982.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624380|gb|ACL30535.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085904|gb|ADP65986.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086477|gb|ADP66558.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087058|gb|ADP67138.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087615|gb|ADP67694.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 170 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 2/140 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY+ SF A++S+F V+ +N +YS+ LI + ++ AG+F LGA F + +++Y G Sbjct: 2 EFVFYVCSFAAVVSTFFVIIQKNAVYSLVYLIISLLSIAGVFFSLGAFFAGSLEVIIYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A+IV F+F+IMML+I + + + + +++ + + +F + Sbjct: 62 AIIVLFVFVIMMLNISDKYNLEEAHYLKPRFWIGPSILSLILLLSMTYAIFFLRDKKIDG 121 Query: 125 VFKGNNVENIGKVLYTQYAY 144 + + +G L+ Y + Sbjct: 122 FLIDS--KIVGINLFGPYVF 139 >gi|57923576|gb|AAW59532.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana] gi|57923580|gb|AAW59535.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana] gi|58045456|gb|AAW65055.1| NADH dehydrogenase subunit 6 [Nereocystis luetkeana] Length = 311 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIV 107 + V LF++MMLD I+ + +K+ +LG+ +I Sbjct: 65 IAVLVLFVVMMLDVKAIESPWSAKKKRFLYLGALIFLFFLTAVIY 109 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N++ VK KS Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSVKEKS 297 >gi|295065782|ref|YP_003587722.1| NADH dehydrogenase subunit 6 [Anomochloa marantoidea] gi|251765306|gb|ACT15460.1| NADH dehydrogenase subunit 6 [Anomochloa marantoidea] Length = 176 Score = 82.0 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 10/130 (7%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 NPIYS FSL V + +LL + VA+ ++YVGA+ V L +M ++ + Sbjct: 30 TNPIYSAFSLGLVLVCISLFYLLWNSYLVAVAQFLIYVGAINVLILLAVMFVNSSEWFKD 89 Query: 86 PRKKRGFLGSFFIGILAAELIVCAS------NFMVFSAEGELSRLVFKG--NNVENIGKV 137 + +G F ++ + ++ +++V +G NN++ IG Sbjct: 90 --QNYWTIGDGFTSLVCTTIPFSLMATIPDTSWYGILWTTRSNQIVEQGLNNNLQQIGIH 147 Query: 138 LYTQYAYPLE 147 L T + P E Sbjct: 148 LATDFYLPFE 157 >gi|302543402|ref|ZP_07295744.1| putative NADH dehydrogenase subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461020|gb|EFL24113.1| putative NADH dehydrogenase subunit [Streptomyces himastatinicus ATCC 53653] Length = 186 Score = 81.6 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 3/169 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ + VT + +++ L+ A A +LLL AEF+A + +++YVG Sbjct: 21 EIAFLLVGIATFGAAVITVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYVG 80 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V+V LF +M+ I + + + + AA +V + +L + Sbjct: 81 SVVVLLLFGLMLTKAPIGRSPDADSGNRPAALAVAVAAAAALVWVVVDAFRATWIDLDKG 140 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKR 173 V V G+ L+ + P E +LL +++GAIVL R + + KR Sbjct: 141 VQGSTAVS--GESLFRYWVLPFEALSVLLLAALVGAIVLS-RKKVEEKR 186 >gi|164420816|ref|YP_001648636.1| NADH dehydrogenase subunit 6 [Hydra oligactis] gi|158668156|gb|ABW76614.1| NADH dehydrogenase subunit 6 [Hydra oligactis] Length = 185 Score = 81.6 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 1/178 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF+ S + I S + + NPI+SVF L+ F + L + L EF++ + +++Y+GA+ Sbjct: 4 FFFFSSILIIFGSLMCINSLNPIHSVFWLVAIFFFSXTLLINLNLEFLSFLLIIIYIGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-LSRLV 125 ++ FLF+IMMLDI I L IV S F+ + + LS + Sbjct: 64 VILFLFVIMMLDIIQIKKNSNINNIIPIILIILSLFIIKIVNISEFIPYYINSDYLSFNL 123 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 +N N+ Y++Y + +L + MIG I L L + + K+Q+I Q N Sbjct: 124 INHHNXHNLTLYFYSKYFINFLLISIVLSIGMIGVIKLTLVNNTNSKKQEIFVQHLRN 181 >gi|110578641|ref|YP_667830.1| NADH dehydrogenase subunit 6 [Verticillium dahliae] gi|84682168|gb|ABC60427.1| NADH dehydrogenase subunit 6 [Verticillium dahliae] Length = 222 Score = 81.6 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 38/200 (19%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S I+ L++ +NPI SV LI F A +LLG F+ L+VY+GAV + Sbjct: 22 IVSLFIILCGVLIIISKNPIVSVLFLIGLFGGVASYLILLGLNFIGFSYLIVYIGAVSIL 81 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112 FLFI+M+++I I + K + FI I + + Sbjct: 82 FLFILMLINIRISELQSNTKNSIPLALFITIFFNYSLFQVLPYDLAILNNNNNYINNILY 141 Query: 113 ---------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGF 151 + F+ + + +++ +IG +LYT L + Sbjct: 142 YISLNKQETINDSKLLNTDNDLYFATSNSWDGNLIETSHISSIGNILYTTNNMWLILVSL 201 Query: 152 ILLLSMIGAIVLMLRHRRDI 171 ILLL+M+GAI++ ++ R+ Sbjct: 202 ILLLAMVGAIIITIKSNRNS 221 >gi|311896695|dbj|BAJ29103.1| putative NADH-quinone oxidoreductase subunit J [Kitasatospora setae KM-6054] Length = 236 Score = 81.6 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 VT R +++ L+ A A FLLL AEFVA + ++VY+G+VIV LF +M+ I Sbjct: 43 VTTRQLVHAALWLVVALGGLAVEFLLLTAEFVAWVQVLVYLGSVIVLVLFGLMLTRAPIG 102 Query: 83 VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142 + + +G +A +V +V + L G+ L++ + Sbjct: 103 RSPDADSGNRPAALAVGAASAATLV---TLVVDAFRSSWIDLSGAAGTTRLTGEYLFSHW 159 Query: 143 AYPLE 147 P E Sbjct: 160 VLPFE 164 >gi|58045466|gb|AAW65060.1| NADH dehydrogenase subunit 6 [Ecklonia radiata] Length = 311 Score = 81.6 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAEL 105 + V LF++MMLD I+ + +K+ + G+ I + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSSKKKRLLYCGALIFLIFLGAV 107 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%) Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKV 193 + +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N++ +K Sbjct: 239 LSYLLYSTHAILLLIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKE 295 Query: 194 KS 195 KS Sbjct: 296 KS 297 >gi|58045490|gb|AAW65072.1| NADH dehydrogenase subunit 6 [Lessonia flavicans] gi|292385473|gb|ADE22028.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] gi|292385481|gb|ADE22034.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] Length = 311 Score = 81.6 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 44/75 (58%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDID 80 + V LF++MMLD+ Sbjct: 65 IAVLVLFVVMMLDVK 79 >gi|281428806|ref|YP_003354985.1| NADH dehydrogenase subunit 6 [Pneumocystis carinii] gi|270486323|gb|ACZ82946.1| NADH dehydrogenase subunit 6 [Pneumocystis carinii] Length = 174 Score = 81.6 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S ++I+ + LVVT +NP+ S+ LI F++ + L ++ + + VYVGA+ + F+ Sbjct: 9 SCLSILLAILVVTSKNPVLSLLYLIGLFIDIGVYLISLQLTYLGLSYITVYVGAIAMLFI 68 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-----------FSAEGE 120 F+IMML+I +V E +KK +L S +G+ +V + + Sbjct: 69 FVIMMLNI--QVVESKKKTNYLRSIPLGLFLGSSLVFTLYLSLPREIIMEKYSHLFSYFS 126 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + VE +GKVLYT Y+ L + IL+L+++GAI + Sbjct: 127 WENRILNPSVVEILGKVLYTDYSLWLLLISLILVLAIVGAISIAAHK 173 >gi|302423955|ref|XP_003009807.1| NADH dehydrogenase subunit 6 [Verticillium albo-atrum VaMs.102] gi|261361697|gb|EEY24125.1| NADH dehydrogenase subunit 6 [Verticillium albo-atrum VaMs.102] Length = 222 Score = 81.6 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 38/200 (19%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S I+ L++ +NPI SV LI F A +LLG F+ L+VY+GAV + Sbjct: 22 IVSLFIILCGVLIIISKNPIVSVLFLIGLFGGVASYLILLGLNFIGFSYLIVYIGAVSIL 81 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF----------------- 112 FLFI+M+++I I + K + FI I + + Sbjct: 82 FLFILMLINIRISELQSNTKNSIPLALFITIFFNYSLFQVLPYDLAILNNNNNYINNILY 141 Query: 113 ---------------------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGF 151 + F+ + + +++ +IG +LYT L + Sbjct: 142 YISLNKQETINDSKLLNTNNDLYFATSNSWDGNLIETSHISSIGNILYTTNNMWLILVSL 201 Query: 152 ILLLSMIGAIVLMLRHRRDI 171 ILLL+M+GAI++ ++ R+ Sbjct: 202 ILLLAMVGAIIITIKSNRNS 221 >gi|192293096|ref|YP_001993701.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodopseudomonas palustris TIE-1] gi|192286845|gb|ACF03226.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodopseudomonas palustris TIE-1] Length = 168 Score = 81.2 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 4/166 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SL A+IS+ + VT N ++++ L+ + A F LGA F A++ +++Y Sbjct: 1 MSSLLAIYAGAFALISAAVSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLIMIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F++M L I E R++ ++ + +L + LIV F F + Sbjct: 61 AGAIVVLFVFVVMTLPISPESI-TRERALLRRAWPLPVLMSVLIVAPFVFGEFGLKAIGQ 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +GK+L+ +A +E++ +L+ +IG + R Sbjct: 120 PAPVSA---QEVGKLLFGPWALAVELASLLLMAGLIGVRHIGRNDR 162 >gi|261416725|ref|YP_003250408.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373181|gb|ACX75926.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 190 Score = 81.2 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 5/178 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+ +F+ ++++ V V+N + S LIF+FV A L++L+ AEF+A+ ++ Sbjct: 11 MGGMDIAFYVVAFVILMTAVCCVAVKNILQSAVFLIFSFVTTAILYMLMHAEFIALAQVM 70 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVG V++F +F I++ E A K +F + I ++V A G Sbjct: 71 VYVGGVVIFVVFTILLTSHLGEDAFTTKMPRIFTAFALSIAFVFVMVKCVLPTPDLASGI 130 Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ ++++N L + P EI +LL+++I AI + R + DI+ + Sbjct: 131 VNSPA-DYSSLQNFALRLLGNDPNGFIIPFEIVSVLLLMTLICAITVARRSKEDIEEE 187 >gi|321271265|gb|ADW79436.1| NADH dehydrogenase subunit 6 [Glomerella lindemuthiana] Length = 231 Score = 81.2 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 4/130 (3%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S AI+ + L + +NPI SV LI F + + +LLG F+ + L+VY+GAV + Sbjct: 22 IVSVFAILCAILTIVSKNPIVSVLFLIGLFGSVSSYLILLGLNFIGLSYLIVYIGAVSIL 81 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 FLFI+M+++I + + K + FI IL L+ + + L+ G+ Sbjct: 82 FLFILMLINIRVSELQSNTKNSIPLALFITILFNYLVFQFLPYDL----AILNNSNKGGS 137 Query: 130 NVENIGKVLY 139 V + VLY Sbjct: 138 QVAALNNVLY 147 >gi|292385422|gb|ADE21990.1| NADH dehydrogenase subunit 6 [Ecklonia cava] Length = 311 Score = 81.2 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAELIV 107 + V LF++MMLD I+ + K+ + G+ ++ Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSSKEKRLLYCGALIFLFFLGAVMY 109 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 +LY+ +A L I+G ILL++M+GAI L L+ + + +QL N++ +K K Sbjct: 242 LLYSTHAILLIIAGVILLIAMVGAISLTLQKN---CPESLYRQLGRESKNAVFSIKEKP 297 >gi|269128577|ref|YP_003301947.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Thermomonospora curvata DSM 43183] gi|268313535|gb|ACY99909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermomonospora curvata DSM 43183] Length = 184 Score = 81.2 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 48/81 (59%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F L +A+ S+ LVVT R +++ L+ AF AG +L+L AEFVA ++ Sbjct: 1 MTAAEVVFALLGVVAVGSAVLVVTTRQLVHAALWLVVAFGALAGCYLVLTAEFVAWTQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI 81 +YVGAV+V LF IM+ I Sbjct: 61 IYVGAVVVLLLFGIMLTRAPI 81 >gi|11467053|ref|NP_042529.1| NADH dehydrogenase, subunit 6 [Acanthamoeba castellanii] gi|6647619|sp|Q37371|NU6M_ACACA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|562034|gb|AAD11822.1| NADH dehydrogenase, subunit 6 [Acanthamoeba castellanii] Length = 260 Score = 81.2 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 59/107 (55%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + + +F F+A+ SF+++ +NPI+S+ LI F N + ++LG EF+A+I L+VY Sbjct: 2 LTNYLLIIFCFLALFCSFMIIASKNPIHSILYLILVFCNVTFVLIILGVEFIAIIFLIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 VGA+ V FLF++MML+I I + R I + Sbjct: 62 VGAIAVLFLFVVMMLNIKILELDEVFWRYIPAGLLISSCFLFQLFTF 108 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 42/76 (55%) Query: 117 AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 A L L F+ N E +G ++YT + + ILL+SMIG+I+L+L +IKRQ I Sbjct: 185 ASTNLLGLSFELTNTEILGWLVYTYTFFIFLVVSLILLISMIGSIILVLNQNINIKRQVI 244 Query: 177 SKQLESNPDNSIVMVK 192 +Q + +S+ + Sbjct: 245 FRQSLRDLKSSVSLKN 260 >gi|39937316|ref|NP_949592.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rhodopseudomonas palustris CGA009] gi|39651174|emb|CAE29697.1| NADH-ubiquinone dehydrogenase chain J [Rhodopseudomonas palustris CGA009] Length = 168 Score = 80.8 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 4/166 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SL A+IS+ + VT N ++++ L+ + A F LGA F A++ +++Y Sbjct: 1 MSSLLAIYAGAFALISAAVSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLIMIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F++M L I E R++ ++ + +L + LIV F + Sbjct: 61 AGAIVVLFVFVVMTLPISPESI-TRERALLRRAWPLPVLMSVLIVAPFVFGEIGLKATGQ 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +GK+L+ +A +E++ +L+ +IG + R Sbjct: 120 PAPVSA---QEVGKLLFGPWALAVELASLLLMAGLIGVRHIGRNDR 162 >gi|91176238|ref|YP_537111.1| NADH dehydrogenase subunit 6 [Paracoccidioides brasiliensis] gi|63081167|gb|AAY30330.1| NADH dehydrogenase subunit 6 [Paracoccidioides brasiliensis] Length = 185 Score = 80.8 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 7/167 (4%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + I + +NP+ S+F LI F + + L+G EF+ + L+VY+GAV + Sbjct: 19 ILYIICIFFGLYTILNKNPVISIFFLIGLFSSISCYLFLIGLEFIGLSYLLVYIGAVSIL 78 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-------MVFSAEGELS 122 FLFI+M++++ I + + F IL ++ +++ Sbjct: 79 FLFILMLINLRISELTTKTTNSLPLAIFSFILFIFILNFNLPINTRDNPEIIYVISLNWD 138 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 ++ + +IG +LYT Y+ L I ILLL+M+G+IV+ L + Sbjct: 139 NILINNTQINSIGNILYTNYSLWLIILSVILLLAMVGSIVITLNKNK 185 >gi|302327785|gb|ADL26986.1| NADH-quinone oxidoreductase, J subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 180 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 5/178 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + FY+ +F+ ++++ V V+N + S LIF+FV A L++L+ AEF+A+ ++ Sbjct: 1 MGGMDIAFYVVAFVILMTAVCCVAVKNILQSAVFLIFSFVTTAILYMLMHAEFIALAQVM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVG V++F +F I++ E A K +F + I ++V A G Sbjct: 61 VYVGGVVIFVVFTILLTSHLGEDAFTTKMPRIFTAFALSIAFVFVMVKCVLPTPDLASGI 120 Query: 121 LSRLVFKGNNVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 ++ ++++N L + P EI +LL+++I AI + R + DI+ + Sbjct: 121 VNSPA-DYSSLQNFALRLLGNDPNGFIIPFEIVSVLLLMTLICAITVARRSKEDIEEE 177 >gi|291296247|ref|YP_003507645.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus ruber DSM 1279] gi|290471206|gb|ADD28625.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Meiothermus ruber DSM 1279] Length = 199 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 4/138 (2%) Query: 3 MQSLFFYLFSFMAIIS-SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 M F+ + + + ++ VV ++N +++ +LI F+ AG+++ L A FVAMI ++V Sbjct: 1 MSIGFWEVLALLVLVGTGLAVVRLQNAVHAALALIANFLVVAGVYVALEARFVAMIQIIV 60 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 Y GA++V FLF+IM+L + + ++ L A + + V + Sbjct: 61 YAGAIVVLFLFVIMLLS---AASANVGQDLLPRLGWVAALGALGLAGVLTYAVTRFQPPA 117 Query: 122 SRLVFKGNNVENIGKVLY 139 G + +G +LY Sbjct: 118 GTPALGGGLPQALGPLLY 135 >gi|118579076|ref|YP_900326.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pelobacter propionicus DSM 2379] gi|118580055|ref|YP_901305.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pelobacter propionicus DSM 2379] gi|118581585|ref|YP_902835.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Pelobacter propionicus DSM 2379] gi|118501786|gb|ABK98268.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379] gi|118502765|gb|ABK99247.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379] gi|118504295|gb|ABL00778.1| NADH dehydrogenase subunit J [Pelobacter propionicus DSM 2379] Length = 164 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 2/158 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +F FS +A+I + LV+T+R P+ +L+ + AG++ LGA +AM +++Y Sbjct: 1 MIDVFIAFFSLLAVIFAALVLTLRQPMRCALALVSHMICLAGIYAALGAHVIAMFQVLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGAV+VF ++ IM+LD + R + + +G+ A ++ A ++ + Sbjct: 61 VGAVMVFMVYTIMLLDDRDDSYRHPYARKIVPAVVVGLGFAAVVWAAIGYLPAQPA--AA 118 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 Y + E++ +LL+ ++ A Sbjct: 119 APAVDPFTFAAFSLSFMKYYWFHFELATVLLLIGVVAA 156 >gi|300115151|ref|YP_003761726.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Nitrosococcus watsonii C-113] gi|299541088|gb|ADJ29405.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Nitrosococcus watsonii C-113] Length = 261 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 95/237 (40%), Gaps = 53/237 (22%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+Q + F +F+F++I + + T + S L+ +F+ AGLF+LL A+ +A++ +++ Sbjct: 6 VLQWITFGIFAFISIAGALGMATTMSMFRSGIFLMASFIGVAGLFILLLADLLALLQIMM 65 Query: 62 YVGAVIVFFLF----------IIMMLDIDIEVAEPRKKRGFLGSF--------------- 96 Y+G ++V LF +M + + E G S Sbjct: 66 YIGGMLVMILFMLLFSGDPGGAMMSTHMRLRGPEWFFSLGLARSPQSKADGNKDDSSPDK 125 Query: 97 --------------------------FIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 +L+ + +++ + R + ++ Sbjct: 126 GNHEEEGEKEGNHGNDDMSMFTPVKRAAALLSVGIGALLIALLLWRPHWAVVRQMPDQDS 185 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML--RHRRDIKRQDISKQLESNPD 185 IG +L +Y E +G ++LL + GA++L +H +R+D+ +++ P Sbjct: 186 PRRIGHLLMDKYMLAFEGAGLLILLGIFGAVMLQRPGKHPDPTQREDLQAAVDAPPA 242 >gi|121534368|ref|ZP_01666192.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Thermosinus carboxydivorans Nor1] gi|121307138|gb|EAX48056.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Thermosinus carboxydivorans Nor1] Length = 168 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 4/161 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY+ + + + ++ VV RN ++S L F+ AGL++LL A+F+A + ++VY G Sbjct: 7 TASFYVLAALTLAAAAGVVFKRNLVHSALLLALTFIGVAGLYVLLQADFLAAVQVLVYNG 66 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV V + +M+ + + + + +I+ A + Sbjct: 67 AVAVIVVIGVMVTQRGDMKSSNPSNSLGWKAAAVAAVFTGMIIAAVAATPWPLAAAPPAA 126 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 E +L +A E + +LL++M+GAI+L Sbjct: 127 ATAPAIAE----ILLRDFAVAFETAAVLLLVAMMGAIILAK 163 >gi|124302959|ref|YP_001023754.1| NADH dehydrogenase subunit 6 [Angiopteris evecta] gi|221272308|sp|A2T386|NU6C_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|110628357|gb|ABG79653.1| NADH-plastoquinone oxidoreductase subunit 6 [Angiopteris evecta] Length = 197 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 N +YS L F+ + L+L+L A+FVA +++YVGAV V +F +M++D + Sbjct: 30 TNIVYSALLLGLVFICISLLYLVLNADFVAAAQVLIYVGAVNVLTVFAVMLIDKPKNITL 89 Query: 86 PRKK----RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--NNVENIGKVLY 139 LG + +++ +++ + ++ V +G +V+ IG L Sbjct: 90 FSFSNVGDNITLGVCTSLFILLTIMIPDASWSEIYMTKQSTKFVEQGLTTDVQLIGSQLL 149 Query: 140 TQYAYPLEISGFILLLSMIGAIVLMLRHR 168 T++ P E+ +LL+++IGAI + + R Sbjct: 150 TKFLLPFELLSILLLVALIGAITIARQER 178 >gi|289474479|gb|ADC97857.1| NADH dehydrogenase subunit 6 [Paragorgia kaupeka] Length = 154 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 7/110 (6%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L+ AFVNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V Sbjct: 1 WLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNQVDYQDHSHFLP 60 Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143 + +I + + S + + ++ N+ IG LYT Y Sbjct: 61 -------VGLSVIFLFYSLLTNSPKYIGNPVIGSRTNIGAIGSHLYTTYY 103 >gi|302824511|ref|XP_002993898.1| hypothetical protein SELMODRAFT_137798 [Selaginella moellendorffii] gi|296399275|gb|ADH10450.1| NADH-plastoquinone oxidoreductase subunit 6 [Selaginella moellendorffii] gi|300138265|gb|EFJ05039.1| hypothetical protein SELMODRAFT_137798 [Selaginella moellendorffii] Length = 190 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 8/157 (5%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + S VV++ N ++ S + + A+F A + ++++ GAV V F M Sbjct: 21 LGSLGVVSLVNIVHPAPSSGSVSACISLPHPSMNADFAAAVQILIHAGAVNVPIPFAAMP 80 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF------KGNN 130 + K +G L N +++++ + +V ++ Sbjct: 81 VSQPQYPHP--AKPWTVGDGITSALRTSAFPPLINMILYTSWYRIFPIVLRNAGSSPTHS 138 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V+ IG T+ P E +LL++++GAI + R Sbjct: 139 VQRIGSYSSTESLPPFEPPSIVLLVALVGAITVARRE 175 >gi|283850898|ref|ZP_06368184.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio sp. FW1012B] gi|283573821|gb|EFC21795.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Desulfovibrio sp. FW1012B] Length = 172 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 5/150 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M FYL + + + ++ L T RNP+++V + F+ AAG+F++LGA ++ +V Sbjct: 1 MTALGALFYLLAAVLLGAAVLTATRRNPMHAVCCAVITFLAAAGMFVVLGAPLPGVLEVV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA++V FLFIIM+L + R R + L + Sbjct: 61 VYAGAIMVLFLFIIMLLGLSAGTGPVRAGRLVVPGVLAAASLVALFALIG-----ADPAG 115 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISG 150 + L + +G VL+ Y +E+ Sbjct: 116 RTMLPAAIASPAAVGTVLFDAYWLAVEVVS 145 >gi|113170504|ref|YP_717295.1| nad6 [Ostreococcus tauri] gi|112806911|emb|CAL36417.1| unnamed protein product [Ostreococcus tauri] Length = 256 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 52/91 (57%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 +V+ +NP+YSV LI F N AGL LLL +F A+I L+VYVGA+ V FLF++MMLDI Sbjct: 20 MVIRSKNPVYSVLFLILVFCNTAGLLLLLNLDFFALIFLIVYVGAIAVLFLFVVMMLDIK 79 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + + FIG++ N Sbjct: 80 LAEMQESIFFYLPIGGFIGLIFFIEFYFLFN 110 >gi|300087938|ref|YP_003758460.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527671|gb|ADJ26139.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 162 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 L F++F+ I ++ VV RN + LI F AGLF+ L A+F+A I +++YVG Sbjct: 2 ELAFFIFASGIIGTALAVVLFRNIFRASLMLILCFFLVAGLFVTLYADFLAAIQVLIYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++ + + + +ML +I+ + F + LI+ + + +S L Sbjct: 62 SISILII-LAIMLTREIQTGNLSNRLRAPALFTGAGVTLVLILTSVG-----TDWNVSTL 115 Query: 125 VFKGNNVENIGKVLYTQ--YAYPLEISGFILLLSMIGAIVLMLRHRR 169 N + ++L++ + + ++ +LL ++IGAI+L+ + Sbjct: 116 KPAENTTALLAELLFSTDSFMMAVAMAAILLLTAIIGAIILVRSDDK 162 >gi|167044393|gb|ABZ09070.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [uncultured marine crenarchaeote HF4000_APKG6D3] Length = 177 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + M F + + I+S+ + +R+ IY +L+ AG F+LL + FVA+ + Sbjct: 5 LNMVDALFLGIAVLTIVSAIAALEMRSLIYGGLALMGTLGGIAGFFILLDSPFVALFQIA 64 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VYVG++ V LF+IM++ ++ + KR + G + IL L N + S Sbjct: 65 VYVGSIAVLILFVIMLVKSELIFQKKEDPKRRYAGIALMLILMICLGAVIFNSGLSSITT 124 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 E + + + IG+ Y L +L S+ GA++L R Sbjct: 125 EEPPVDY-----KEIGEDFLIYYWPALIAMALVLSGSITGALILARRQ 167 >gi|200004082|ref|YP_002221532.1| NADH dehydrogenase subunit 6 [Hydra magnipapillata] gi|194578744|tpe|CAP49321.1| TPA: NADH dehydrogenase subunit 6 [Hydra vulgaris] Length = 185 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 1/173 (0%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S + I+ + + NPI+SVF L+ F + L + L EF++++ +++YVGA+++ FL Sbjct: 9 SILIILGCLMCINSLNPIHSVFWLVTVFFFSFALLINLNLEFLSLLLIIIYVGAIVILFL 68 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-LSRLVFKGNN 130 F+IMMLDI I L I+ F+ + + L+ + N Sbjct: 69 FVIMMLDIIQIKKNSNINNIIPIILIILSLLTIKIINKDIFLSYHLNNDFLNFNLINHYN 128 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 N+ Y++Y+ + IL + MIG IVL + + + K+Q I Q N Sbjct: 129 FHNLALFFYSKYSINFILISIILSIGMIGVIVLTITYNSNSKKQKIFIQHLRN 181 >gi|284034102|ref|YP_003384033.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Kribbella flavida DSM 17836] gi|283813395|gb|ADB35234.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Kribbella flavida DSM 17836] Length = 176 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 4/165 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + +A++++ LVVT R +++ L+ A AG F L AEFVA++ ++VY Sbjct: 1 MTTALFSVAGAVALVAAVLVVTSRRIVHAALWLVVALGAVAGCFGALHAEFVALVQILVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA++V LF +M+ R + A + V A G Sbjct: 61 VGAIVVLVLFALMLTKAPTNPLPALTTRRSP----FAAVVAGALAVLLGAGVVIAFGNEK 116 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + E +G ++ + P E+ +LL ++IGAIVL R Sbjct: 117 IGPVPAGSAEAVGTSVFRIWVLPFEVLSVLLLAALIGAIVLSHRK 161 >gi|168703223|ref|ZP_02735500.1| hypothetical protein GobsU_27071 [Gemmata obscuriglobus UQM 2246] Length = 191 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 50/120 (41%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F + S+ VV R+ + L+F V + ++ LLGAEF L+ Sbjct: 1 MSLPVILFAVVGAATCASALGVVAARDVVRMAVWLLFTLVGVSLIYFLLGAEFAGAAQLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVG +V +F +M+ ++ + +G+ L+ S + GE Sbjct: 61 VYVGGTLVLVVFGVMLTAHGPLRELRTRRTEWFVGGALGVALFTLLAVVSLKLGSPTAGE 120 >gi|282860267|ref|ZP_06269337.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella bivia JCVIHMP010] gi|282586941|gb|EFB92176.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella bivia JCVIHMP010] Length = 177 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 71/172 (41%), Gaps = 5/172 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + S + + ++ L V + + +L+F AGL+ LL F+ + + +Y Sbjct: 3 QIIMFAVLSVVILGAALLSVMTNRIMRAATALLFVLFGVAGLYFLLDYTFLGAVQISIYA 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELS 122 G + + ++F I +++ + G + L+V + F+ ++ Sbjct: 63 GGITMVYVFAIHLVNKQTLQGLSERWLGKRTILAAALALIGLVVVVAIFLKNQLLNAVVA 122 Query: 123 RLVFKGNNVENIGKVLYT----QYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +E IG L + Y P E LL +IG +V++ + ++ Sbjct: 123 STTSAELPMEKIGTTLMSGDKYGYVLPFEFISLFLLACIIGGLVILNKTKKG 174 >gi|333025063|ref|ZP_08453127.1| putative NADH dehydrogenase subunit I J [Streptomyces sp. Tu6071] gi|332744915|gb|EGJ75356.1| putative NADH dehydrogenase subunit I J [Streptomyces sp. Tu6071] Length = 211 Score = 78.9 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 +++ L+ A +LLL AEF+A + +++YVG+V+V LF +M+ I ++ Sbjct: 1 MHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVGSVVVLLLFGLMLTRAPIGRSDDAD 60 Query: 89 KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLE 147 R + + +LAA +V + L +G G L+ + P E Sbjct: 61 SRNRPLAAAVALLAAAGLVWVVTDAFRTTYIHLDGAHPQGTTAVT-GAFLFRHWVLPFE 118 >gi|292385485|gb|ADE22037.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] gi|292385489|gb|ADE22040.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] gi|292385493|gb|ADE22043.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] gi|292385497|gb|ADE22046.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] gi|292385501|gb|ADE22049.1| NADH dehydrogenase subunit 6 [Lessonia vadosa] Length = 311 Score = 78.9 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 43/75 (57%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+Y L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYRGLYLVLLFFLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDID 80 + V LF++MMLD+ Sbjct: 65 IAVLVLFVVMMLDVK 79 >gi|255961346|ref|YP_003097528.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii] gi|254941518|gb|ACT89033.1| NADH dehydrogenase subunit 6 [Selaginella moellendorffii] Length = 180 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 8/157 (5%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + S VV++ N ++ S + + A+F A + ++++ GAV V F M Sbjct: 21 LGSLGVVSLVNIVHPAPSSGSVSACISLPHPSMNADFAAAVQILIHAGAVNVPIPFAAMP 80 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF------KGNN 130 + K +G L N +++++ + +V ++ Sbjct: 81 VSQPQYPHP--AKPWTVGDGITSALRTSAFPPLINMILYTSWYRIFPIVLRNAGSSPTHS 138 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 V+ IG T+ P E +LL++++GAI + R Sbjct: 139 VQRIGSYSSTESLPPFEPPSIVLLVALVGAITVARRE 175 >gi|24080118|ref|NP_705909.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. grubii] gi|22536162|gb|AAN01231.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. neoformans] gi|23630297|gb|AAN37587.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. grubii] Length = 202 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 96/202 (47%), Gaps = 35/202 (17%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + L +F A++S LV+T NP+ SV LI FVNAAG +LLG FV + L+VY Sbjct: 1 MNTFLLDLLAFGAVLSGVLVITSVNPVISVLFLISVFVNAAGYLVLLGVGFVGISYLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGILAAELI------------ 106 VGA+ + FLF++MML+I I V K LG + E++ Sbjct: 61 VGAIAILFLFVVMMLNISITEIVSVGREYTKNLPLGFVVGTVFFFEILSVIPAATTNAGE 120 Query: 107 ------------VCASNFMVFSAEGELSRLVFKGNN-------VENIGKVLYTQYAYPLE 147 + N + +++ ++ +N +E IG LYT + L Sbjct: 121 LPLGLFTYLNGLLLGVNTSITNSDVNMAFANTGADNAFSSHLQIEAIGHGLYTYGSVWLL 180 Query: 148 ISGFILLLSMIGAIVLMLRHRR 169 ++ FILLL+M+G I L LR R Sbjct: 181 LASFILLLAMVGPIALCLRPRT 202 >gi|307566016|ref|ZP_07628474.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella amnii CRIS 21A-A] gi|307345204|gb|EFN90583.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella amnii CRIS 21A-A] Length = 176 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 72/172 (41%), Gaps = 5/172 (2%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 Q + F + + + + ++F V + + +L+F AG++ LL F+ + + +Y Sbjct: 3 QIIMFAVLAVVILAAAFFSVLTSRIMRAATALLFVLFGVAGMYFLLDYTFLGTVQISIYA 62 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 G + + ++F I +++ + G G+ +V A+ F+ + Sbjct: 63 GGITMVYVFAIHLVNKQTLRGLSERWLGKRTFLAAGLAVVGFVVVAAVFLKNELLNAVVS 122 Query: 124 LVFKGN-NVENIGKVLYTQ----YAYPLEISGFILLLSMIGAIVLMLRHRRD 170 KG ++ IG L + Y P E LL +IG +V++ + + Sbjct: 123 SSVKGEVPMQKIGTTLMSADKYGYVLPFEFISLFLLACIIGGLVILNKKNKK 174 >gi|225874135|ref|YP_002755594.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196] gi|225793660|gb|ACO33750.1| NADH dehydrogenase subunit J [Acidobacterium capsulatum ATCC 51196] Length = 172 Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 2/165 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F++ +F+ + S+ +T+ I+ +L+ AF A L+L LGAEF + L+VYVG Sbjct: 2 AVSFWILAFLTLASAVAAMTMARLIHCALALVLAFAGVATLYLNLGAEFAGLAQLLVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV + +F I++ A P + F GS + A L + + A ++ Sbjct: 62 AVAILIVFAILLTRSSEVTAMPAARTAFSGSLIALAVFAVLARAIISSRLVHA--APAQP 119 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + V IG+ L Y PLE+ +L ++IGA+++ LR + Sbjct: 120 IAPMATVRQIGEALMQPYVLPLEVLALLLTAALIGAVLIALREKP 164 >gi|209427647|ref|YP_002274321.1| NADH dehydrogenase subunit 6 [Blastocladiella emersonii] gi|82492275|gb|ABB78014.1| NADH dehydrogenase subunit 6 [Blastocladiella emersonii] Length = 201 Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTV-RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 M + FYL S + I+S L + + +NPI SV L+ FVN A +F+LLG + I + Sbjct: 1 MTLTWGVFYLLSVLTILSGVLTIVMGKNPINSVVYLVSCFVNCALIFILLGVNLLGFIYI 60 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +VYVGA+ + F+F+IMM+D+ +E G + A +I ++ ++ Sbjct: 61 IVYVGAIAILFIFVIMMMDLRNLTSEKEMSSNSKGFLSLSYPLALIIAISTLLLMMKENN 120 Query: 120 ELSRLVFKGNNVENIGKVLYTQY 142 L + +IGK++ + Sbjct: 121 LSVILQITTDLGSSIGKIVVNDF 143 >gi|28972928|gb|AAM95264.1| NADH dehydrogenase subunit 6 [Muriceopsis bayeri] gi|28972950|gb|AAM95275.1| NADH dehydrogenase subunit 6 [Muriceopsis flavida] Length = 120 Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSIIFLFYSLLTNSPKYISNPVIGSR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDISK 178 N+ IG LYT Y + I+ +LL++MIGAI+L + RQD+ Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYNSPGESLRSRQDLFL 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|28972902|gb|AAM95251.1| NADH dehydrogenase subunit 6 [Pterogorgia anceps] gi|28972904|gb|AAM95252.1| NADH dehydrogenase subunit 6 [Eunicea knighti] gi|28972906|gb|AAM95253.1| NADH dehydrogenase subunit 6 [Eunicea sp. Bahamas-JS-2002] gi|28972908|gb|AAM95254.1| NADH dehydrogenase subunit 6 [Eunicea tourneforti] gi|28972910|gb|AAM95255.1| NADH dehydrogenase subunit 6 [Eunicea fusca] gi|28972916|gb|AAM95258.1| NADH dehydrogenase subunit 6 [Plexaura homomalla] gi|28972918|gb|AAM95259.1| NADH dehydrogenase subunit 6 [Plexaura flexuosa] Length = 120 Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178 N+ IG LYT Y + I+ +LL++MIGAI+L RQD+ Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYNSHGESLRSRQDLFL 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|116747654|ref|YP_844341.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Syntrophobacter fumaroxidans MPOB] gi|116696718|gb|ABK15906.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Syntrophobacter fumaroxidans MPOB] Length = 175 Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F++ + + + V RN +++V LI A GL+L LG+ F+ ++ L++YVGA+ Sbjct: 15 FWIVVGLTLAGASFAVFPRNILHNVLGLILALSGIGGLYLSLGSFFMGLMQLLIYVGAIC 74 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V +F IM+ R+ + ++ +V +V + Sbjct: 75 VAIVFAIMLSRPLHLEVPKREAPKVAMAVATSVVFLVAMVG----VVLRTNWVPAVERGT 130 Query: 128 GNNVENIGKVLYTQYAYPLEI 148 +VE IG +L T+YA E+ Sbjct: 131 DWSVEAIGDLLLTRYALVFEV 151 >gi|28972900|gb|AAM95250.1| NADH dehydrogenase subunit 6 [Pterogorgia citrina] Length = 120 Score = 78.1 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDISK 178 N+ IG LYT Y + I+ +LL++MIGAI+L + RQD+ Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYNSPGESLRSRQDLFL 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|146277736|ref|YP_001167895.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides ATCC 17025] gi|145555977|gb|ABP70590.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides ATCC 17025] Length = 164 Score = 78.1 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L + +A+ + L VT ++++ L+ A ++ AG F LGA F + +++Y Sbjct: 1 MSDLSAIWCASVALACAILAVTRPAIVHALIWLVAALLSLAGCFFALGAGFAGAVQILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++ F+F++M D E + R G + + + ++ + Sbjct: 61 AGAIVAVFVFVVMTADASPEALARERARLAQGWRRPAAAVGLVALPLALGLLAGGTSPAA 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + +G +L+ +A +E++ +LL +++GA L R Sbjct: 121 APDSGPS----LGAILFGPWAVAVEVASGLLLAALMGARHLGRRREE 163 >gi|57168325|ref|ZP_00367459.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Campylobacter coli RM2228] gi|57020133|gb|EAL56807.1| NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) [Campylobacter coli RM2228] Length = 171 Score = 78.1 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 4/147 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ L F FS + + + V +N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IEILAFTFFSVVVLGFFLVAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GAV+ + F +M D E E KK FL +L +++ + + Sbjct: 62 SGAVLGLYSFAMMFFDSSKEFKEKLRAKKSFFLLVILSAVLLLFMLLGFKHQNIAGDLAL 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147 +F N + + ++++Y E Sbjct: 122 SDPNLFDYN--KQLAFAIFSKYLLAFE 146 >gi|11467591|ref|NP_043737.1| NADH dehydrogenase, subunit 6 [Allomyces macrogynus] gi|1236421|gb|AAC49238.1| NADH dehydrogenase, subunit 6 [Allomyces macrogynus] Length = 204 Score = 78.1 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 2/132 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTV-RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 M + FYL S + IIS L + + +NPI SV L+F FVN A +F+L+G + I + Sbjct: 1 MTITWGLFYLLSGLGIISGVLTIIMGKNPINSVVYLVFCFVNCAAVFILMGISLLGFIYI 60 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +VYVGA+ + F+F+IMM+D+ + E G F LI+ + ++ + Sbjct: 61 IVYVGAIAILFIFVIMMMDLR-NLTESNLMSGHKTFFSFYNYPLALIIAITTLLLVMKDN 119 Query: 120 ELSRLVFKGNNV 131 + V N+ Sbjct: 120 SHAVSVLFDTNI 131 >gi|28972920|gb|AAM95260.1| NADH dehydrogenase subunit 6 [Plexaura kuna] Length = 120 Score = 78.1 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178 N+ IG LYT Y + I+ +LL++MIGAI+L RQD+ Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYTSHGESLRSRQDLFL 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|108773226|ref|YP_635801.1| NADH dehydrogenase subunit 6 [Chara vulgaris] gi|122177789|sp|Q1ACE6|NU6C_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|77157882|gb|ABA61923.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chara vulgaris] Length = 178 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 60/147 (40%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q + YL I + V+ N +Y+ SL A L+L A+F+A+ ++ Sbjct: 6 MSYQLIVAYLIQLGIYIGALAVIFFNNIVYAAISLALVLSLIALLYLFFDADFLAVTQIL 65 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +YVGA+ V LF IM++ + ++ +++ + Sbjct: 66 IYVGAINVLILFAIMLISLPKSSTFIFYFTKKSQISAFACISLFVLLVKIILQTPWSTQS 125 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147 L+ + N ++ IG L + + P E Sbjct: 126 SYILLNENNKLDQIGIYLLSNFLLPFE 152 >gi|242092568|ref|XP_002436774.1| hypothetical protein SORBIDRAFT_10g008595 [Sorghum bicolor] gi|241914997|gb|EER88141.1| hypothetical protein SORBIDRAFT_10g008595 [Sorghum bicolor] Length = 103 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 35/97 (36%), Positives = 56/97 (57%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 + S A++S +VV +NP++SV I F + +GL +LL +F AMI VV++GA+ Sbjct: 1 ILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLDLDFSAMIFPVVHIGAI 60 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103 ++ FLF++MM +I I R L S IG++ Sbjct: 61 VISFLFVVMMFNIQIAEIHEEVLRYLLVSGIIGLIFW 97 >gi|81238365|gb|ABB60024.1| NADH dehydrogenase subunit 6 [Calyptrophora japonica] Length = 151 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 13/153 (8%) Query: 40 VNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 VNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V + Sbjct: 1 VNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLPVGLSVI 60 Query: 100 ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 L L+ + ++ S ++ N+ IG LYT Y + ++ +LL++M+G Sbjct: 61 FLFYSLLTNSPKYI----SSTHSPVIGSRTNIGAIGSHLYTTYYELVLVASLVLLVAMVG 116 Query: 160 AIVLMLRHRRDI---------KRQDISKQLESN 183 AI+L + RQD+ Q+ Sbjct: 117 AILLAKQPNPPSLYNSHVEIRSRQDLFLQISRK 149 >gi|108804465|ref|YP_644402.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rubrobacter xylanophilus DSM 9941] gi|108765708|gb|ABG04590.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rubrobacter xylanophilus DSM 9941] Length = 177 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F + M ++S+ VV R+ ++S + AF+ AG F++L +A +++YVG Sbjct: 2 TVAFAFLTGMTLVSALGVVLSRSVVHSALFMSGAFLGVAGFFVMLNVPVLAAFQVLIYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 AV V LF IM R + + G AA + +++ + + Sbjct: 62 AVTVVILFGIMFTQRP---QVRRFRTIINRQIWPGFFAAAGVGAFLCYILATEGWGETGP 118 Query: 125 VFKGNNVENIGKVLYT 140 +V +G+ L Sbjct: 119 GNGARSVAVLGRSLLG 134 >gi|81238355|gb|ABB60019.1| NADH dehydrogenase subunit 6 [Narella alaskensis] gi|81238357|gb|ABB60020.1| NADH dehydrogenase subunit 6 [Narella arbuscula] gi|81238359|gb|ABB60021.1| NADH dehydrogenase subunit 6 [Narella cristata] gi|81238361|gb|ABB60022.1| NADH dehydrogenase subunit 6 [Narella bayeri] gi|81238363|gb|ABB60023.1| NADH dehydrogenase subunit 6 [Narella abyssalis] gi|81238367|gb|ABB60025.1| NADH dehydrogenase subunit 6 [Primnoa pacifica var. willeyi] Length = 151 Score = 77.8 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 13/153 (8%) Query: 40 VNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 VNAA +F+ LG +++ +I ++VYVGA+ + FLF+IM++ +V + Sbjct: 1 VNAAVMFISLGLDYIGLIFIIVYVGAIAILFLFVIMLIQQPNKVDSQDHSHFLPVGLSVI 60 Query: 100 ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 L L+ + ++ S ++ N+ IG LYT Y + ++ +LL++M+G Sbjct: 61 FLFYSLLTNSPKYI----SSTHSPVIGSRTNIGAIGSHLYTTYYELVLVASLVLLVAMVG 116 Query: 160 AIVLMLRHRRDI---------KRQDISKQLESN 183 AI+L + RQD+ Q+ Sbjct: 117 AILLAKQPNTPSLYNSHVEIRSRQDLFLQISRK 149 >gi|46446202|ref|YP_007567.1| putative NADH-ubiquinone oxidoreductase chain J [Candidatus Protochlamydia amoebophila UWE25] gi|46399843|emb|CAF23292.1| putative NADH-ubiquinone oxidoreductase chain J [Candidatus Protochlamydia amoebophila UWE25] Length = 170 Score = 77.8 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 76/160 (47%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++F + +ISSF ++ PI + + A ++ A L++ L A+F+A + +++Y GA++V Sbjct: 11 WIFGILLLISSFGILLTSKPIQASLCFLLALLSLAALYVELSAQFIAAMQVLIYAGAILV 70 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F+F+I++ + + I A L ++ + L Sbjct: 71 IFMFVIVLFQDAHNQIHQFVAQSKSSISILAIAAFLLAFGFLSYYLSELSTSTKSLPEGF 130 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 ++G +LY + +P E I L++++GA+ + + R Sbjct: 131 GTAHSLGYLLYVNFFFPFEAVILIFLIAVVGALYIGRKER 170 >gi|28972934|gb|AAM95267.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia elisabethae] gi|28972936|gb|AAM95268.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia americana] gi|28972938|gb|AAM95269.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia bipinnata] gi|28972940|gb|AAM95270.1| NADH dehydrogenase subunit 6 [Gorgonia ventalina] gi|28972942|gb|AAM95271.1| NADH dehydrogenase subunit 6 [Gorgonia mariae] gi|28972944|gb|AAM95272.1| NADH dehydrogenase subunit 6 [Gorgonia flabellum] gi|28972952|gb|AAM95276.1| NADH dehydrogenase subunit 6 [Pseudopterogorgia acerosa] Length = 120 Score = 77.8 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178 N+ IG LYT Y + I+ +LL++MIGAI+L RQD+ Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDLFL 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|28972898|gb|AAM95249.1| NADH dehydrogenase subunit 6 [Pseudoplexaura crucis] gi|28972912|gb|AAM95256.1| NADH dehydrogenase subunit 6 [Muricea muricata] Length = 120 Score = 77.8 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSK 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178 N+ IG LYT Y + I+ +LL++MIGAI+L + RQD+ Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYNSHGKLLRSRQDLFL 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|28972930|gb|AAM95265.1| NADH dehydrogenase subunit 6 [Pacifigorgia elegans] Length = 120 Score = 77.8 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178 N+ IG LYT Y + I+ +LL++MIGAI+L RQD+ Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDLFL 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QVSRE 118 >gi|167042387|gb|ABZ07114.1| putative NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [uncultured marine crenarchaeote HF4000_ANIW97P9] Length = 171 Score = 77.4 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 6/166 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F + + I+S+ + +R+ IY +L+ AG F+LL + FVA+ + VY Sbjct: 1 MVDSLFLGIAVLTIVSAIAALEMRSLIYGGIALMGTLGGIAGFFILLDSPFVALFQIAVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VG++ V LF IM++ ++ + KR + G + IL L N + S E Sbjct: 61 VGSIAVLILFTIMLVKNELIFQKKEDPKRRYAGIALMLILMISLGAVIFNSGLSSITTEE 120 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + + + IG+ Y L +L S+ GA++L R Sbjct: 121 PPVDY-----KEIGEDFLIYYWPALIAMALVLAGSITGAMILARRQ 161 >gi|292385426|gb|ADE21993.1| NADH dehydrogenase subunit 6 [Ecklonia radiata] Length = 286 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F + + + V + +NP+YS L+ F + + LLG EF+A++ L+VY GA Sbjct: 5 IIFIFIATLGGMLGIKVTSTQNPVYSGLYLVLLFFLGSAISFLLGLEFMALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLD---IDIEVAEPRKKRGFLGSFFIGILAAEL 105 + V LF+ MMLD I+ + +K+ + G+ I + Sbjct: 65 IAVLELFVDMMLDVKAIERPWSSKKKRLLYCGALIFLIFLGAV 107 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 24/35 (68%) Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + +LY+ +A L I+G ILL++M+GAI L L+ Sbjct: 239 LSYLLYSTHAILLLIAGVILLIAMVGAISLTLQKN 273 >gi|77463680|ref|YP_353184.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides 2.4.1] gi|77388098|gb|ABA79283.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides 2.4.1] Length = 164 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L + +A+ S+ L VT ++++ L+ A ++ AG F LGA F + +++Y Sbjct: 1 MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++ F+F++M D E + R G A + V ++ + Sbjct: 61 AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLTRTSAPEA 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +G +L+ +A +E++ +LL +++GA L R Sbjct: 121 APATGAG----LGAILFGPWALAVEVASGLLLAALMGARHLGRRREE 163 >gi|126462512|ref|YP_001043626.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides ATCC 17029] gi|126104176|gb|ABN76854.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides ATCC 17029] Length = 164 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 4/167 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L + +A+ S+ L VT ++++ L+ A ++ AG F LGA F + +++Y Sbjct: 1 MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++ F+F++M D E + R G A + V ++ A + Sbjct: 61 AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLTRASAPEA 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +G +L+ +A +E++ +LL +++GA L R Sbjct: 121 APATGAG----LGAILFGPWALAVEVASGLLLAALMGARHLGRRREE 163 >gi|261187255|ref|XP_002620077.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis SLH14081] gi|239586520|gb|EEQ69163.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis SLH14081] gi|239606194|gb|EEQ83181.1| NADH dehydrogenase subunit 6 [Ajellomyces dermatitidis ER-3] Length = 202 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 24/187 (12%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + + I+ S + +NP+ S+F LI F++ + +G EF+ + L+VYVGAV Sbjct: 16 FLDIIYIICILFSLYTIISKNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAV 75 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI-------------------- 106 + FLFI+M+++I I + IL ++ Sbjct: 76 SILFLFILMLINIRISELLSDTYNYLPLAMLSVILFIYILGQNIPNNISELGYNKFENLK 135 Query: 107 ----VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 +++ + + +IG +LYT Y+ L I ILLL+M+G IV Sbjct: 136 QEYFFNYKEDILYVISLNWDTSLVNNTQISSIGNILYTNYSIWLLILSIILLLAMVGTIV 195 Query: 163 LMLRHRR 169 + L + Sbjct: 196 ITLNKNK 202 >gi|28972932|gb|AAM95266.1| NADH dehydrogenase subunit 6 [Pacifigorgia stenobrochis] Length = 120 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178 N+ IG LYT Y + I+ +LL++MIGAI+L RQD+ Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDLFL 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|305432366|ref|ZP_07401528.1| NADH-quinone oxidoreductase subunit J [Campylobacter coli JV20] gi|304444405|gb|EFM37056.1| NADH-quinone oxidoreductase subunit J [Campylobacter coli JV20] Length = 171 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 4/147 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ L F FS + + + V N +YS+ +L V +G + LL AEF+ +I ++VY Sbjct: 2 IEILAFTFFSVVVLGFFLVAVLSTNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 GAV+ + F +M D E E KK FL +L +++ + + Sbjct: 62 SGAVLGLYSFAMMFFDSSKEFKEKLRAKKSFFLLVILSAVLLLFMLLGFKHQNIAGDLAL 121 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147 +F N + + ++++Y E Sbjct: 122 SDPNLFDYN--KQLAFAIFSKYLLAFE 146 >gi|221639524|ref|YP_002525786.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodobacter sphaeroides KD131] gi|221160305|gb|ACM01285.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 precursor [Rhodobacter sphaeroides KD131] Length = 164 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 4/167 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L + +A+ S+ L VT ++++ L+ A ++ AG F LGA F + +++Y Sbjct: 1 MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++ F+F++M D E + R G A L V ++ A + Sbjct: 61 AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALLAVPLVLGLLARASAPEA 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +G +L+ +A +E++ +LL +++GA L R Sbjct: 121 APATGAG----LGAILFGPWALAVEVASGLLLAALMGARHLGRRREE 163 >gi|301058805|ref|ZP_07199791.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [delta proteobacterium NaphS2] gi|300447090|gb|EFK10869.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [delta proteobacterium NaphS2] Length = 169 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + + + + V ++ + ++ LI + AG++LLL A F+A + +++YVG V Sbjct: 8 AFLFYCLIIGAGAVMAVMSKSLVRALVGLIAVMIALAGMYLLLAAPFIAFMQILIYVGGV 67 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 V F IM+ E E LG +L + + ++ Sbjct: 68 SVLIFFAIMLSKASAEGDETGSVS--LGRAVNALLCLLVPAVIFSVVIIYHPVTTRDAPL 125 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFIL 153 + +G+ + Y P E+ +L Sbjct: 126 DVSPA-LLGEGMLGPYLLPFELISVVL 151 >gi|28972948|gb|AAM95274.1| NADH dehydrogenase subunit 6 [Leptogorgia virgulata] Length = 120 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLIQQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGYR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178 N+ IG LYT Y + I+ +LL++MIGAI+L RQD+ Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPSSPFLYNSHGESLRSRQDLFL 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|327179837|ref|YP_004327734.1| NADH dehydrogenase subunit 6 [Placozoan sp. 'Shirahama'] gi|298561256|dbj|BAJ09639.1| NADH dehydrogenase subunit 6 [Placozoan sp. 'Shirahama'] Length = 278 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 15/105 (14%) Query: 4 QSLFFYLFSFMAIISSFLVVT---------------VRNPIYSVFSLIFAFVNAAGLFLL 48 + + F + S + + ++ + + N + SVF LI F+ ++GLF++ Sbjct: 8 EDILFIILSSVTVTAAIMTIRGALVSPASSAVTPTYSYNFLASVFWLILTFIGSSGLFIV 67 Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 LG EF+ +I L+VYVGA+ + FLF+IMM+ + + K F+ Sbjct: 68 LGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGDQKEKETKGYSFI 112 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 34/64 (53%) Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 AA L + N ++ + + G N+E IG VLY Y Y + FILL++MIGAI Sbjct: 211 AAALNLAQQNPLLGPNDSFFTLNGSGGTNLEAIGSVLYINYYYAFILVSFILLVAMIGAI 270 Query: 162 VLML 165 VL Sbjct: 271 VLGR 274 >gi|225554147|gb|EEH02512.1| NADH dehydrogenase subunit 6 [Ajellomyces capsulatus G186AR] Length = 202 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 24/187 (12%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + + I S + +NP+ S+F LI F++ + +G EF+ + L+VYVGAV Sbjct: 16 FLDIIYIICIFFSLYTIISKNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAV 75 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114 + F+FI+M+++I I + IL ++ + Sbjct: 76 SILFIFILMLINIRISELLSETYNYIPLAMLSVILFIYILGQNIPNNISVLGYNKFENLK 135 Query: 115 ------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + +IG VLYT Y+ L I ILLL+M+G IV Sbjct: 136 QEYFFNYKEDIQYVISLNWDNSLVNNTQISSIGNVLYTNYSIWLLIISIILLLAMVGTIV 195 Query: 163 LMLRHRR 169 + L + Sbjct: 196 ITLNKNK 202 >gi|114177223|gb|ABI53775.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ49] Length = 278 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 15/105 (14%) Query: 4 QSLFFYLFSFMAIISSFLVVT---------------VRNPIYSVFSLIFAFVNAAGLFLL 48 + + F + S + + ++ + + N + SVF LI F+ ++GLF++ Sbjct: 8 EDILFIILSSVTVTAAIMTIRGALVSPASSAVTPTYSYNFLASVFWLILTFIGSSGLFIV 67 Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 LG EF+ +I L+VYVGA+ + FLF+IMM+ + + K F+ Sbjct: 68 LGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGDQKDKETKGYSFI 112 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 34/64 (53%) Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 AA L + N ++ + + G N+E IG VLY Y Y + FILL++MIGAI Sbjct: 211 AAALNLAQQNPLLGPNDSFFTLNGSGGTNLEAIGSVLYINYYYAFILVSFILLVAMIGAI 270 Query: 162 VLML 165 VL Sbjct: 271 VLGR 274 >gi|320449681|ref|YP_004201777.1| NADH-quinone oxidoreductase subunit J [Thermus scotoductus SA-01] gi|320149850|gb|ADW21228.1| NADH-quinone oxidoreductase, subunit J [Thermus scotoductus SA-01] Length = 179 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 4/137 (2%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + LVVT++N I++ +LI F+ AGL++ L A F+ I ++VY GA++V FLF+IM+ Sbjct: 14 FTGVLVVTLKNAIHAALALIGNFLVLAGLYVALEARFLGFIQIIVYAGAIVVLFLFVIML 73 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 L + L L++ + + V A + +G + +G Sbjct: 74 LYAAQGEVGFDPLVRSRPLAALLALGVALVLLSGLWGVNLAFTK----DLQGGLPQALGP 129 Query: 137 VLYTQYAYPLEISGFIL 153 +LY + + L GF+L Sbjct: 130 LLYGDWLFVLLAVGFLL 146 >gi|240272796|gb|EER36347.1| NADH-ubiquinone oxidoreductase chain 6 [Ajellomyces capsulatus H143] gi|325087325|gb|EGC40635.1| NADH-ubiquinone oxidoreductase chain 6 [Ajellomyces capsulatus H88] Length = 202 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 24/187 (12%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + + I S + +NP+ S+F LI F++ + +G EF+ + L+VYVGAV Sbjct: 16 FLDIIYIICIFFSLYTIISKNPVVSIFFLIGLFLSISCYLFFIGLEFIGLSYLLVYVGAV 75 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV------------ 114 + F+FI+M+++I I + IL ++ + Sbjct: 76 SILFIFILMLINIRISELLSETYNYIPLAMLSVILFIYILGQNIPNNISVLGYNKFENLK 135 Query: 115 ------------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + + + +IG VLYT Y+ L I ILLL+M+G IV Sbjct: 136 QEYFFNYKENIQYVISLNWDNSLVNNTQISSIGNVLYTNYSIWLLIISIILLLAMVGTIV 195 Query: 163 LMLRHRR 169 + L + Sbjct: 196 ITLNKNK 202 >gi|114177239|gb|ABI53790.1| NADH dehydrogenase subunit 6 [Placozoan sp. BZ2423] Length = 301 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 15/109 (13%) Query: 4 QSLFFYLFSFMAIISSFLVVT---------VRNPIYS------VFSLIFAFVNAAGLFLL 48 + + F S + +I++ + ++ PIYS VF LI AF+ ++GLF++ Sbjct: 8 EDVLFATLSSITVIAAIMTISSGATPKKSSAVTPIYSHNFLASVFWLILAFIGSSGLFIV 67 Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97 LG EF+ +I L+VYVGA+ + FLF+IMM+ + P +R + Sbjct: 68 LGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGSFLGAPTLERRSAPDLW 116 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%) Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +N+E IG VLY Y Y + FILL++MIGAIVL L+ Sbjct: 251 FAPSAPGCSNLEAIGAVLYINYYYAFILVSFILLVAMIGAIVLGLQ 296 >gi|94962399|gb|ABF48517.1| NADH dehydrogenase subunit 6 [Trichoplax adhaerens] Length = 308 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 15/90 (16%) Query: 4 QSLFFYLFSFMAIISSFLVVT---------VRNPIYS------VFSLIFAFVNAAGLFLL 48 + + F + S + +I++ + ++ PIYS VF LI AF+ ++GLF++ Sbjct: 8 EDVLFIILSSITVIAAIMTISSGAIPKQSSAVTPIYSHNFLASVFWLILAFIGSSGLFIV 67 Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 LG EF+ +I L+VYVGA+ + FLF+IMM+ Sbjct: 68 LGMEFLGLIFLIVYVGAICIIFLFVIMMIP 97 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 22/39 (56%), Positives = 28/39 (71%) Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 G+N+E IG VLY Y Y + FILL++MIGAIVL L+ Sbjct: 265 GSNLEAIGSVLYINYYYVFILVSFILLVAMIGAIVLGLQ 303 >gi|164422132|ref|YP_001648746.1| NADH dehydrogenase subunit 6 [Mycosphaerella graminicola] gi|155964395|gb|ABU40262.1| NADH dehydrogenase subunit 6 [Mycosphaerella graminicola] Length = 225 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 47/204 (23%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F +II LV+ +NP+ SV LI F+N AG ++LG F+ + L+VYVGAV + Sbjct: 22 IITFASIICGILVIISKNPVVSVLFLIGLFLNIAGYLMMLGINFIGLSYLLVYVGAVSIL 81 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV---------------------- 107 FLFI+M++++ I + IG + + Sbjct: 82 FLFILMLINVRISELVTDNNNSIPLAIMIGSIFNLTLYKLLPNNFSSNEYGFVPHKLGSL 141 Query: 108 -------------------------CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQY 142 +N + F + ++ + +++ +IG VLYT Y Sbjct: 142 SDKSLLEAQTLAGDNMGSNLYNAYNVHNNNLSFVSSHIWDGVLSETSHITSIGNVLYTAY 201 Query: 143 AYPLEISGFILLLSMIGAIVLMLR 166 L ++ ILLL+M+GAIV+ ++ Sbjct: 202 PLWLILTSIILLLAMVGAIVITIK 225 >gi|87306368|ref|ZP_01088515.1| NADH Dehydrogenase I Chain J [Blastopirellula marina DSM 3645] gi|87290547|gb|EAQ82434.1| NADH Dehydrogenase I Chain J [Blastopirellula marina DSM 3645] Length = 245 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 52/107 (48%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + ++FFYL SF+A + +V N + F L+ + +GL L GA FV + L+ Sbjct: 12 INWHTVFFYLTSFIACGFALAMVVSSNVVRMAFFLVLSLAATSGLIFLTGAHFVGAMQLM 71 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +YVG +V +F +M+ ++ K ++ + +G L+ Sbjct: 72 IYVGGTVVLLIFGVMLTAQQAFISMKTKAGDWILALIVGGSLLALLT 118 >gi|283780915|ref|YP_003371670.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula staleyi DSM 6068] gi|283439368|gb|ADB17810.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Pirellula staleyi DSM 6068] Length = 370 Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 63/187 (33%), Gaps = 21/187 (11%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F LF+ +A + V N + F L + +GLF L GAEFV + L++YVG Sbjct: 28 LFVLFALLACGFAIAVAASSNIVRMAFYLTLSLGATSGLFFLAGAEFVGAMQLMIYVGGT 87 Query: 67 IVFFLFIIMML-DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +V +F +M+ + L + L L A ++ V Sbjct: 88 LVLLIFGVMLTAQARFVSMQTSAGEWVLAAVLGSSLLLLLFRSALGVPSWTTPRPDPENV 147 Query: 126 --FKGNNVENIGKVL------------------YTQYAYPLEISGFILLLSMIGAIVLML 165 + IG L Y P + LL+ +IGA + Sbjct: 148 VLADAHTSTEIGTALAGVRVDKLEQANEALIPGMAGYLMPFVVISMHLLVVLIGAGYMAR 207 Query: 166 RHRRDIK 172 R K Sbjct: 208 TKRARSK 214 >gi|332558536|ref|ZP_08412858.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides WS8N] gi|332276248|gb|EGJ21563.1| NADH dehydrogenase I chain J [Rhodobacter sphaeroides WS8N] Length = 164 Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L + +A+ S+ L VT ++++ L+ A ++ AG F LGA F + +++Y Sbjct: 1 MSDLVAVWCASVALASAILAVTRPAIVHALIWLVAALLSLAGSFFALGASFAGAVQILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++ F+F++M D E + R G A + V ++ + Sbjct: 61 AGAIVAVFVFVVMTADASPEALARERARLSAGWKRPAAAVALVAVPLVLGLLARTSAPEA 120 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +G +L+ +A +E++ +LL +++GA L R Sbjct: 121 APATGAG----LGAILFGPWALAIEVASGLLLAALMGARHLGRRREE 163 >gi|315638071|ref|ZP_07893256.1| NADH-quinone oxidoreductase subunit J [Campylobacter upsaliensis JV21] gi|315481919|gb|EFU72538.1| NADH-quinone oxidoreductase subunit J [Campylobacter upsaliensis JV21] Length = 172 Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 2/166 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ L F +FS + + + V +N +YS+ +L V + + +L AEF+ I ++VY Sbjct: 2 IEQLSFIVFSVLILGFFLVAVLSKNMLYSLSALAGGMVFLSSFYFMLDAEFLGAIQIIVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GAV+ + F +M D + E K + + IG+ L +F + S +L Sbjct: 62 SGAVLGIYSFAMMFFDASKDFKERLKFKKSFFAL-IGLSLVGLFASLMSFKLNSVNVDLP 120 Query: 123 RLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 + ++ + + ++++Y E +LL++++ AIVL + Sbjct: 121 FIDTALFDLNKQLAFAIFSKYLLAFEFVALLLLIALVCAIVLTHKE 166 >gi|110639003|ref|YP_679212.1| NADH:ubiquinone oxidoreductase subunit J [Cytophaga hutchinsonii ATCC 33406] gi|110281684|gb|ABG59870.1| NADH dehydrogenase subunit J [Cytophaga hutchinsonii ATCC 33406] Length = 172 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 2/158 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F+ F+ + S+ +++ RN +Y+ +L+ + + A LF++ G++ +A++ LVVY Sbjct: 1 MIEIVFFFFAIQLLSSALVILFTRNVVYAAIALMSSLLGVAALFVIAGSDLLAVVQLVVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VG V++ LF ++ D E + KK L + +LA L+ S+ + S Sbjct: 61 VGGVLILLLFGVLYTYRDPE-SYFEKKHILLSIVTVVVLAVGLLFLLSDLSFKYPQLHTS 119 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 KG + G + T++ E+ LL+ ++GA Sbjct: 120 PYDEKGI-TKYTGYLWITEHIVVFEVVAIFLLVVLVGA 156 >gi|28972946|gb|AAM95273.1| NADH dehydrogenase subunit 6 [Phyllogorgia dilatata] Length = 120 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLIQQPNKVDSQDYSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGFR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML----------RHRRDIKRQDISK 178 N+ IG LYT Y + I+ +LL++MIGAI+L RQD+ Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPFLYNSHGESLRSRQDLFL 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|218295769|ref|ZP_03496565.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermus aquaticus Y51MC23] gi|218243928|gb|EED10455.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermus aquaticus Y51MC23] Length = 177 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 4/128 (3%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 RN I++ +LI F+ AG+++ L A F+ I ++VY GA++V FLF+IM+L Sbjct: 23 RNAIHAALALILNFLVLAGVYVALDARFLGFIQIIVYAGAIVVLFLFVIMLLFAAQGEIG 82 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145 + L ++ + + + G+ +G + +G +LY + + Sbjct: 83 FDPLVRARPLAALLALGVAALLLSGLWGLKLTLGK----DLQGGLPQALGPLLYGDWLFV 138 Query: 146 LEISGFIL 153 L GF+L Sbjct: 139 LLAVGFLL 146 >gi|282881436|ref|ZP_06290110.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella timonensis CRIS 5C-B1] gi|281304662|gb|EFA96748.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Prevotella timonensis CRIS 5C-B1] Length = 146 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 4/143 (2%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 + + LIF AG++ LLG ++ + +Y G + + ++F I ++ Sbjct: 1 MRAATFLIFVLFGVAGIYFLLGYTYLGAAQIAIYAGGITILYIFAIQLVSKRTLQGLVEH 60 Query: 89 KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT----QYAY 144 +G + L + + +++ + IG+ L QY Sbjct: 61 LKGSRVIQGALLSLIGLATVLGVLVKNQFIHQATQVADAEVPMNVIGQALVGSEKYQYVL 120 Query: 145 PLEISGFILLLSMIGAIVLMLRH 167 P E+ LL +IG +++ + Sbjct: 121 PFELISVFLLACIIGGLLIARKE 143 >gi|55980062|ref|YP_143359.1| NADH-quinone oxidoreductase subunit 10 [Thermus thermophilus HB8] gi|2499299|sp|Q56225|NQO10_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 10; AltName: Full=NADH dehydrogenase I chain 10; AltName: Full=NDH-1 subunit 10 gi|1279870|gb|AAA97947.1| NADH dehydrogenase I, subunit NQO10 [Thermus thermophilus] gi|55771475|dbj|BAD69916.1| NADH-quinone oxidoreductase chain 10 [Thermus thermophilus HB8] Length = 176 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 4/128 (3%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 RN I++ +LI F+ AG+++ L A F+ I ++VY GA++V FLF+IM+L Sbjct: 23 RNAIHAALALILNFLVLAGVYVALDARFLGFIQVIVYAGAIVVLFLFVIMLLFAAQGEIG 82 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145 + L I+ A + + A + KG + +G +LY + + Sbjct: 83 FDPLVRSRPLAALLALGVAGILAAGLWGLDLAFTQ----DLKGGLPQALGPLLYGDWLFV 138 Query: 146 LEISGFIL 153 L GF+L Sbjct: 139 LLAVGFLL 146 >gi|256593098|gb|ACV03505.1| NADH dehydrogenase subunit 6 [Acanella eburnea] gi|256593101|gb|ACV03507.1| NADH dehydrogenase subunit 6 [Orstomisis crosnieri] gi|256593104|gb|ACV03509.1| NADH dehydrogenase subunit 6 [Gorgonisis sp. SCF-2009] gi|256593107|gb|ACV03511.1| NADH dehydrogenase subunit 6 [Pteronisis incerta] gi|256593110|gb|ACV03513.1| NADH dehydrogenase subunit 6 [Plexipomisis sp. SCF-2009] gi|256593113|gb|ACV03515.1| NADH dehydrogenase subunit 6 [Primnoisis cf. deliculata SCF-2009] Length = 90 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 55/87 (63%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFL 93 + FLF+IM++ +V Sbjct: 64 AILFLFVIMLIQQPNKVDSQDHSHFLP 90 >gi|11465931|ref|NP_050064.1| NADH dehydrogenase subunit 6 [Pedinomonas minor] gi|4378775|gb|AAD19673.1| NADH dehydrogenase subunit 6 [Pedinomonas minor] Length = 190 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 8/193 (4%) Query: 1 MVMQSLFFYLFSFMAIISSF-LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITL 59 M M + LFS + + +N I ++ +F+ A ++LL F+ +I + Sbjct: 1 MEMFTELIILFSLTFFFNLLSKTILTKNAILVALYIVGSFILAGLIYLLANFPFLGVILI 60 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +VYVGAV+V FLF+IMM+ + I E F F +L L+ S+F + S Sbjct: 61 LVYVGAVVVLFLFVIMMIPLRIVFFENNFSIFFFNYFLWTVL---LVFFFSSFDILSTSF 117 Query: 120 ELSRLVFKGNNV-ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR-RDIKRQDIS 177 EL + N+ + + ++Y + + F+L +SMIGAI + ++ I+ Sbjct: 118 EL--IFQSRTNLFQLLALIIYLDNVWYFLFAAFLLTISMIGAISITQTKSVNKNFKEIIN 175 Query: 178 KQLESNPDNSIVM 190 QL N + V+ Sbjct: 176 IQLNKNYKSDFVL 188 >gi|17063207|gb|AAL32512.1| NADH dehydrogenase subunit 6 [Daucus carota] Length = 121 Score = 74.3 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 40/106 (37%), Positives = 58/106 (54%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + + S +A++S+ +VV +NP++SV I F N +GL LLLG +F AMI VVY+GA Sbjct: 1 MILSVLSSLALVSALMVVRAKNPVHSVSFSIPVFRNTSGLLLLLGLDFFAMIFPVVYIGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V FLF+ MM I I R S IG++ + N Sbjct: 61 IAVSFLFVGMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILN 106 >gi|51245167|ref|YP_065051.1| NADH dehydrogenase, subunit 6 [Desulfotalea psychrophila LSv54] gi|50876204|emb|CAG36044.1| probable NADH dehydrogenase, subunit 6 [Desulfotalea psychrophila LSv54] Length = 177 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 63/145 (43%), Gaps = 4/145 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F + + ++ + ++ AGL+ L + F++M+ +++Y+GA Sbjct: 14 LVFLVTIAITLVGGLITCLAHKLFRALCGFALTSTGVAGLYFFLNSPFISMMQILIYIGA 73 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V + F +M+ D + + + + IG + ++ A F+V A+ + + Sbjct: 74 VSITISFGVMLASPD---SIKKMQPIKPLAGPIGFAVSGMLAGALMFLVTRADWPIMAKI 130 Query: 126 FKGNNVENIGKVLYTQYAYPLEISG 150 G+ + IG L TQY+ E+ Sbjct: 131 TDGS-MRTIGIELLTQYSLVFELIS 154 >gi|58578583|ref|YP_203329.1| NADH dehydrogenase subunit 6 [Smittium culisetae] gi|57339027|gb|AAW49496.1| NADH dehydrogenase subunit 6 [Smittium culisetae] Length = 170 Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + I L+ NPIYSV SLI F+ LF+ G F+ + ++YVGA+ + Sbjct: 6 FINILIFIFGLLIFLFINPIYSVLSLISVFILTGILFIFYGLTFIGLSYFIIYVGAISIL 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS---RLVF 126 F+F IMML+ D GIL + + + + +S + F Sbjct: 66 FIFAIMMLETDFPSTIKYLDLKKDIPLITGILCILIYYYLDLSYINNNKNIISGINNIYF 125 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +N++ IG LYT + L + FILLL+MIG I+L L+ ++ Sbjct: 126 YSSNIKLIGYCLYTTHCLWLILISFILLLAMIGPIILCLKMNKN 169 >gi|162148246|ref|YP_001602707.1| NADH-quinone oxidoreductase subunit J [Gluconacetobacter diazotrophicus PAl 5] gi|161786823|emb|CAP56406.1| putative NADH-quinone oxidoreductase chain J [Gluconacetobacter diazotrophicus PAl 5] Length = 168 Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ ++ F L + + ++++F+ VT N ++++ L+ + AG+F LGA F AM+ ++ Sbjct: 1 MMDMNVSFALSALVVVLAAFMTVTRANAVHALLYLVVLLLALAGIFFQLGAPFAAMLEVI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y GA++V F+F++MML++ + R++ + +IG + ++ A+ + Sbjct: 61 IYAGAIMVLFVFVVMMLNL-GATDQRRERAWIVPRVWIGPVLLAGVLLAALLRALAVTAP 119 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSM 157 G +G VLY YA +E++ F+LL + Sbjct: 120 AGGGGPIG--PAQVGLVLYGPYALTVELASFLLLAGL 154 >gi|295697427|ref|YP_003590665.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus tusciae DSM 2912] gi|295413029|gb|ADG07521.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Bacillus tusciae DSM 2912] Length = 172 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F+L + +AI +FL+ + ++ V S+ +F++ AGLF +LGAEF+ + L+ Sbjct: 1 MAQNVITFFLLAGVAIAGAFLMFRSKRIVHMVLSIALSFLSLAGLFAVLGAEFLFVAQLI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY GA+ + +F IM+ + L ++ A G+ Sbjct: 61 VYSGAITILAVFSIMLTRHEPAGPAVGAAGFKRWFRLAVPLGLFALLAWIILDTPIAVGQ 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147 L+ ++ N E + +Y E Sbjct: 121 LTEVIGPMNMAEAL---FAPRYLLSFE 144 >gi|330339456|ref|YP_004376365.1| NADH dehydrogenase subunit 6 [Moniliophthora roreri] gi|308912823|gb|ADO51570.1| NADH dehydrogenase subunit 6 [Moniliophthora roreri] Length = 207 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 2/142 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L + +F ++S +T +NP+ SV LI FV +AG +L+G F+ + ++VY Sbjct: 1 MTTLLINILAFATLLSGIFSITSKNPVISVLFLIGTFVLSAGYLILIGINFIGISYIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V FLF+IMM++I + + + + + L + ++ + Sbjct: 61 VGAIAVLFLFVIMMINIKLTDI-LETGSQYTKTLPLALAVGSLFIFIIFSIIKFNYNNVP 119 Query: 123 RLVFKGNNVENIGKVLYTQYAY 144 L + + L++ Y Sbjct: 120 VLSIFLDKI-TFSNGLFSNYYI 140 >gi|292385595|gb|ADE22119.1| NADH dehydrogenase subunit 6 [Lessonia variegata] gi|292385599|gb|ADE22122.1| NADH dehydrogenase subunit 6 [Lessonia variegata] gi|292385603|gb|ADE22125.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 51/104 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + V LF++MMLD+ K+ I + LI Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFGFFLIAVI 108 >gi|3122566|sp|Q36836|NU6M_TRIRU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1017449|emb|CAA61356.1| ND6 [Trichophyton rubrum] Length = 203 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 23/177 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F++II + +NP+ SV LI F + +++G F+ + L+VY+GAV + Sbjct: 21 ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLIMIGLTFIGLSYLLVYIGAVSIL 80 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSF-----FIGILAAELIVCASNFMV---------- 114 FLFI+M+++I I + + IL ++I F + Sbjct: 81 FLFILMLINIRISELVSTNNNYIPLAILSMITLVYILGQKIITNVVQFNILNSFTSSLFE 140 Query: 115 --------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +S + + IG ++Y+ Y++ L I ILLL+M+G+IV+ Sbjct: 141 KSFKESINYSNSLSWDTNLIDITHTSAIGNIMYSSYSFWLIIISLILLLAMVGSIVI 197 >gi|49147020|ref|YP_025876.1| NADH dehydrogenase subunit 6 [Moniliophthora perniciosa] gi|34538665|gb|AAQ74273.1| NADH dehydrogenase subunit 6 [Moniliophthora perniciosa] Length = 207 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 2/142 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L + +F ++SS +T +NP+ SV LI FV +AG +L+G F+ + ++VY Sbjct: 1 MTTLLINILAFATLLSSIFSITSKNPVISVLFLIGTFVLSAGYLILIGINFIGISYIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V FLF+IMM++I + + + + + L + ++ + Sbjct: 61 VGAIAVLFLFVIMMINIKLTDI-LETGSQYTKTLPLALAVGSLFIFIIFSIIKFNYNNVP 119 Query: 123 RLVFKGNNVENIGKVLYTQYAY 144 L + + L++ Y Sbjct: 120 VLSILLDKI-TFSNGLFSNYYI 140 >gi|209542886|ref|YP_002275115.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter diazotrophicus PAl 5] gi|209530563|gb|ACI50500.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gluconacetobacter diazotrophicus PAl 5] Length = 165 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 83/153 (54%), Gaps = 3/153 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F L + + ++++F+ VT N ++++ L+ + AG+F LGA F AM+ +++Y G Sbjct: 2 NVSFALSALVVVLAAFMTVTRANAVHALLYLVVLLLALAGIFFQLGAPFAAMLEVIIYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A++V F+F++MML++ + R++ + +IG + ++ A+ + Sbjct: 62 AIMVLFVFVVMMLNL-GATDQRRERAWIVPRVWIGPVLLAGVLLAALLRALAVTAPAGGG 120 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSM 157 G +G VLY YA +E++ F+LL + Sbjct: 121 GPIG--PAQVGLVLYGPYALTVELASFLLLAGL 151 >gi|28972914|gb|AAM95257.1| NADH dehydrogenase subunit 6 [Muricea pinnata] Length = 120 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + + ++ Sbjct: 1 LFLFVIMLILQPNKVDSQDHSHFLP-------VGLSVIFLFYSLLTNSPKYISNPVIGSK 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPD 185 N+ IG LYT Y + I+ +LL++MIGAI+L + K L S D Sbjct: 54 TNIGAIGSHLYTTYYELVLIASLVLLVAMIGAILLAKQPNSPSLYNSHGKLLRSRXD 110 >gi|292385591|gb|ADE22116.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVCFLIAVIYS 110 >gi|292385572|gb|ADE22102.1| NADH dehydrogenase subunit 6 [Lessonia variegata] gi|292385583|gb|ADE22110.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVCFLIAVIYS 110 >gi|292385587|gb|ADE22113.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVCFLIAVIYS 110 >gi|292385579|gb|ADE22107.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVCFLIAVIYS 110 >gi|77164004|ref|YP_342529.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Nitrosococcus oceani ATCC 19707] gi|254435897|ref|ZP_05049404.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nitrosococcus oceani AFC27] gi|76882318|gb|ABA56999.1| NADH dehydrogenase subunit J [Nitrosococcus oceani ATCC 19707] gi|207089008|gb|EDZ66280.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nitrosococcus oceani AFC27] Length = 265 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 56/218 (25%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+Q F +F+F++I + + T + S L+ +F+ AGLF+LL A+ +A++ +++ Sbjct: 6 VLQWAAFGIFAFISIAGALGMATTMSMFRSGIFLMASFIGVAGLFILLLADLLALLQIMM 65 Query: 62 YVGA--VIVFFLF--------IIMMLDIDIEVAEPRKKRGF------------------- 92 Y+G V++ F+ +M + + E G Sbjct: 66 YIGGMLVMILFMLLFSGDPGGGMMSTHMRLRGPEWFFSLGLARSPSGTDGNNANDSSDKE 125 Query: 93 ---------------------------LGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 LA + V +++ + + Sbjct: 126 EDQRDQARDSHQEEGEKEESNDMSMFTPAKRGAAGLALGIGVLLIALLLWRPHWAVVAQM 185 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++ IG +L +Y E +G ++LL + GA++L Sbjct: 186 PDPDSPRRIGHLLMDKYMIAFEGAGLLILLGIFGAVLL 223 >gi|17351909|dbj|BAB78595.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis] gi|189304013|gb|ACD85988.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis] gi|261498876|gb|ACX84830.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis] gi|261888215|gb|ACY06069.1| NADH dehydrogenase subunit 6 [Volvox carteri f. nagariensis] Length = 162 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ +L + ++I V ++P S+ + F+N++ + ++LG EF+A++ L+ Sbjct: 1 MFFENCAIFLCALLSIA----VAYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLL 56 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGA+ V FLF+IM+L E+ + LG +GIL L + G Sbjct: 57 VYVGALAVLFLFVIMLL----EIPATELRAYSLGWSSLGILVFILNGVIQVTPSMGSRGI 112 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 +S L + + N+G LY +A L ++ F+L +++ GA + Sbjct: 113 ISGLPGAES-ISNLGHALYLYFADLLILNSFVLTVALFGAFAIA 155 >gi|46200213|ref|YP_005880.1| NADH-quinone oxidoreductase chain J [Thermus thermophilus HB27] gi|46197841|gb|AAS82253.1| NADH-quinone oxidoreductase chain J [Thermus thermophilus HB27] Length = 179 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 4/128 (3%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 RN I++ +LI F+ AG+++ L A F+ I ++VY GA++V FLF+IM+L Sbjct: 23 RNAIHAALALILNFLVLAGVYVALDARFLGFIQVIVYAGAIVVLFLFVIMLLFAAQGEIG 82 Query: 86 PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYP 145 + L ++ + + A + KG + +G +LY + + Sbjct: 83 FDPLVRSKPLAALLALGVAGVLATGLWGLRLAFTQ----DLKGGLPQALGPLLYGDWLFV 138 Query: 146 LEISGFIL 153 L +GF+L Sbjct: 139 LLAAGFLL 146 >gi|160688734|gb|ABX45150.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum] Length = 299 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 33/83 (39%), Positives = 49/83 (59%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYSV +LI F A + ++L EF+A I ++V VGAV V FLFIIMM++I++ + Sbjct: 25 NPIYSVLNLIIIFWCYACILIILDMEFLACIFILVNVGAVAVLFLFIIMMININVVEIKD 84 Query: 87 RKKRGFLGSFFIGILAAELIVCA 109 K+ + F+ + LI Sbjct: 85 NLKKYYPFLIFLSLNIIGLISLI 107 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM--- 164 A + + F+ + + ++++IG +LY + ++ ILL++M+G I + Sbjct: 201 ALSLIKFTQYENIYERFVQTTDIKHIGSNLLYASNSIWFILACLILLVAMVGVIYITEEL 260 Query: 165 --LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGKGI 199 R + K Q++ +Q+ + +I VK K I Sbjct: 261 LIKRRLENNKSQNLFEQISKDYITNIKFYDVKVTKKI 297 >gi|292385576|gb|ADE22105.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 286 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILLFVCFLIAVIYS 110 >gi|292385544|gb|ADE22081.1| NADH dehydrogenase subunit 6 [Lessonia brevifolia] Length = 311 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + LI + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKHFLYLGILLFVFFLIAVIYS 110 >gi|289582896|ref|YP_003481362.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Natrialba magadii ATCC 43099] gi|289532449|gb|ADD06800.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Natrialba magadii ATCC 43099] Length = 96 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 47/85 (55%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F LF+F+ + S VV + +P +S L A ++ A F++ AEFVAM+ ++ Sbjct: 1 MTYELIAFTLFAFITLASGLGVVLLEDPWHSALMLGVALMSIAVHFVMQAAEFVAMMQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85 VYVG V++ F +M+ E Sbjct: 61 VYVGGVLILITFAVMLTQHKGATDE 85 >gi|74310557|ref|YP_313641.1| NADH dehydrogenase subunit 6 [Epidermophyton floccosum] gi|58429685|gb|AAW78247.1| NADH dehydrogenase subunit 6 [Epidermophyton floccosum] Length = 199 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 20/174 (11%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + ++I+ + +NP+ SV LI F + +L+G F+ + L+VY+GAV + Sbjct: 22 ILALISIMFGIYTIVCKNPVISVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSIL 81 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV--------------------CA 109 FLFI+M+++I I + I ++ Sbjct: 82 FLFILMLINIRISELVSTNNNYIPLAVLSMITLVYILGQKVITNVVQLNTFSSSLFEKSF 141 Query: 110 SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 ++ +S + + IG ++Y+ Y+ L I ILLL+M+G+IV+ Sbjct: 142 KEWINYSNSLSWDTNLIDITHTSAIGNIMYSNYSLWLIIISLILLLAMVGSIVI 195 >gi|158251753|ref|YP_001504367.1| NADH dehydrogenase subunit 6 [Pleurotus ostreatus] gi|122893354|gb|ABM67626.1| NADH dehydrogenase subunit 6 [Pleurotus ostreatus] Length = 206 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + + + SS +T +NP+ S+ +I FV AAG + +G F+ + +V+Y Sbjct: 1 MTTFFVNILALGTLFSSVFAITSKNPVISIIFVIATFVQAAGYLIFIGVNFIGISYIVIY 60 Query: 63 VGAVIVFFLFIIMMLDI---DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 VGA+ V FLF+IMM++I DI + + + IG L +I F + + Sbjct: 61 VGAIAVLFLFVIMMINIKLTDILETGNQYTKNLPLALAIGSLFTYVIFTIIPFNLNNVPA 120 >gi|118576849|ref|YP_876592.1| NADH-ubiquinone oxidoreductase, subunit J [Cenarchaeum symbiosum A] gi|118195370|gb|ABK78288.1| NADH-ubiquinone oxidoreductase, subunit J [Cenarchaeum symbiosum A] Length = 159 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 4/154 (2%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 M I S+ + +R+ IYS +L+ AG F LL + FVA+ + VYVG++ V LF Sbjct: 1 MTIGSAIAALEMRSLIYSSIALMGTLGGIAGFFFLLDSPFVALFQIAVYVGSIAVLILFT 60 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133 +M++ ++ + +R L + ++ + A E V Sbjct: 61 VMLVKRELIFTKVEDRRRRLAGVGLMLVFMTAVGGIFLDSGIRAVTEGGGPVDFT----E 116 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +G T Y L + IL S+ G++VL R Sbjct: 117 VGADFLTYYWPALILMALILAGSVTGSLVLARRE 150 >gi|11465920|ref|NP_046137.1| NADH dehydrogenase subunit 6 [Chlamydomonas moewusii] gi|2865266|gb|AAC39349.1| NADH dehydrogenase subunit 6 [Chlamydomonas moewusii] Length = 171 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 19 SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 + V R+P S+ + F+NA+ + L+LG EF+A++ ++VYVGA+ V FLF+IM+L+ Sbjct: 16 AISVSWTRSPFMSLMFAVMLFINASIVLLMLGFEFLALVNMLVYVGALAVLFLFVIMLLE 75 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF--------SAEGELSRLVFKGNN 130 I RG+ GIL + S ++ V + Sbjct: 76 IPSAELRAYH-RGWSTLALFGILGCWRYASVAPITKTGALMDTFKSPIMSVAGFVPTLES 134 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 + +G Y +YA L I+ +L +++ GA+VL Sbjct: 135 INYVGHAFYIRYADVLIINSLVLTVALFGALVLA 168 >gi|114707867|ref|ZP_01440760.1| hypothetical protein FP2506_00140 [Fulvimarina pelagi HTCC2506] gi|114536645|gb|EAU39776.1| hypothetical protein FP2506_00140 [Fulvimarina pelagi HTCC2506] Length = 199 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 4/169 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + L F S +AI+S + V + + + F L+ +FV + ++L A ++ + T+ Sbjct: 1 MGLTDLLFLALSAVAILSGWRVFATDSMVRASFLLLLSFVAVGLIIVMLAAPYIGVATVF 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 + ++V LF++M + + S G+LA + A F F Sbjct: 61 MMAVEMMVMALFMVMFMMNPAGLNPMMMVHQHRFSIVAGVLAFAGLTAAILFTSFPKI-- 118 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + V ++G L E +G LL +MIG+++L R R Sbjct: 119 --PVDPSTPVVHDLGIELLGPSMLIFETAGVTLLATMIGSVILSSRSGR 165 >gi|46205959|ref|ZP_00210109.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Magnetospirillum magnetotacticum MS-1] Length = 221 Score = 70.8 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 44/76 (57%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + F +F+A+ + + T + S L+ +F+ AGLF+LL A+ + ++ +++Y Sbjct: 5 FELTAFATCAFVAVAGALGMTTTMSMFRSGIFLMASFIGVAGLFILLSADLIGLLQVMMY 64 Query: 63 VGAVIVFFLFIIMMLD 78 +G +V LF+++++ Sbjct: 65 IGGFLVMILFMVLVMH 80 >gi|292385457|gb|ADE22016.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 70.8 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + + I + Sbjct: 65 IAVLVLFVVMMLDVKATERPWSVKKKRFFYLGILLFFSFSIAVIYS 110 >gi|240266491|ref|YP_002970846.1| NADH dehydrogenase subunit 6 [Arthroderma uncinatum] gi|237781107|gb|ACR19599.1| NADH dehydrogenase subunit 6 [Arthroderma uncinatum] Length = 201 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 23/181 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F++II + +NPI SV LI F + +L+G F+ + L+VY+GAV + Sbjct: 21 VLAFISIIFGIYTIISKNPIVSVLFLIALFSTISVYLILIGLTFIGLSYLLVYIGAVSIL 80 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI----------VCASNFMVFSAEG 119 FLFI+M+++I I + I ++ + N +S Sbjct: 81 FLFILMLINIRISELLSTNNNYIPLAILSMITLVYILGQKIIRTVIQLNILNLFSWSFYE 140 Query: 120 ELSRLVFKGNN-------------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 E + + +N + IG ++Y+ Y+ L + ILLL+MIG+IV+ + Sbjct: 141 ETLKEIINYSNSINWDSNLIDITHINAIGNIMYSNYSLWLIMISLILLLAMIGSIVITIG 200 Query: 167 H 167 Sbjct: 201 R 201 >gi|11466304|ref|NP_051132.1| NADH dehydrogenase subunit 6 [Cafeteria roenbergensis] gi|6180086|gb|AAF05783.1|AF193903_6 NADH dehydrogenase subunit 6 [Cafeteria roenbergensis] Length = 250 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 19/155 (12%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 N I+S+ L+ F+ + L EF+ +I L++Y+GA++V FLF++MMLDI + Sbjct: 26 NTIHSLLLLLELFIIGSLLLFFFKVEFLGLIFLMIYLGAILVLFLFVVMMLDIKTTAVQN 85 Query: 87 RKKRGF----LGSFFIGILAAELIVCASNFMVFSAEG---------------ELSRLVFK 127 F LG FF + I F+ + + +L+ Sbjct: 86 DDLNQFIFKGLGLFFFIPVFVWWIFGDVIFLSAMWQSFVKTAVHWSFSLSILDFFQLINF 145 Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 +N+E +G ++ + G IL ++MIGAIV Sbjct: 146 SSNLEVVGWYIFDFQPILFLLCGVILYIAMIGAIV 180 >gi|292385615|gb|ADE22134.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + V LF++MMLD+ IE KK+ FL + + + V S Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILFFVFFLIAVLYS 110 >gi|292385611|gb|ADE22131.1| NADH dehydrogenase subunit 6 [Lessonia variegata] Length = 311 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIATLGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISFLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDID-IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + V LF++MMLD+ IE KK+ FL + + + V S Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFLYLGILFFVFFLIAVIYS 110 >gi|38639908|ref|NP_943719.1| NADH dehydrogenase subunit 6 [Penicillium marneffei] gi|33860262|gb|AAQ54920.1| NADH dehydrogenase subunit 6 [Penicillium marneffei] Length = 194 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 27/188 (14%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + ++I+ L++ +NPI SV LI FVN + L +L+G F+ + ++VYVGAV + Sbjct: 7 IIYLLSIVFGVLIIINKNPIISVLYLIGLFVNISVLLILVGFGFIGLSYILVYVGAVSIL 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAEGELSRLVFK 127 FLFI+M+++I I + +L L+ + NF++ + S ++ Sbjct: 67 FLFILMLINIRISELTNETSNYTPLAILTVMLFYFLVGRILPGNFILLNTNLVNSYIIDT 126 Query: 128 GNN-------------------------VENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 N + IG V+YT YA L I+ ILLL+M+G+IV Sbjct: 127 YVNEHIYDELIQYASSKSWDTSLVDMTHITGIGNVMYTNYAILLIIASIILLLAMVGSIV 186 Query: 163 LMLRHRRD 170 + + + Sbjct: 187 ITKKGDKR 194 >gi|254032055|ref|YP_001023823.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ2423] Length = 277 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 49/80 (61%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ + N + SVF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ Sbjct: 13 SAVTPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMI 72 Query: 78 DIDIEVAEPRKKRGFLGSFF 97 + P +R + Sbjct: 73 PGGSFLGAPTLERRSAPDLW 92 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%) Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 + +N+E IG VLY Y Y + FILL++MIGAIVL L+ Sbjct: 227 FAPSAPGCSNLEAIGAVLYINYYYAFILVSFILLVAMIGAIVLGLQ 272 >gi|162009884|gb|ABX82066.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162009893|gb|ABX82074.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162009902|gb|ABX82082.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162009911|gb|ABX82090.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162009920|gb|ABX82098.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162145625|gb|ABX82846.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|162145635|gb|ABX82855.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] Length = 162 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 5/152 (3%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 + + S V ++P S+ + F+N++ + ++LG EF+A++ L+VYVGA+ V FLF Sbjct: 9 LLCALLSIAVGYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLF 68 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 +IM+L+I + F+ I+ + S + + ++ Sbjct: 69 VIMLLEIPATELRAYSRGWSTLGIFVFIINGVFQITPSM-----GPRGIITGLPGAESIT 123 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 N+G LY +A L ++ +L +++ GA + Sbjct: 124 NLGHALYLYFADLLILNSLVLTVALFGAFAIA 155 >gi|3413802|emb|CAA73989.1| NADH dehydrogenase subunit 6 [Chlorogonium elongatum] Length = 165 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 6/164 (3%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F L +A++S FL+ N S+ + FVNA + L LG EF+A++ ++VYVGA+ Sbjct: 3 FSLIVLLALLS-FLISWTGNVFMSLMYAVMLFVNATLVLLSLGFEFLALVNMLVYVGALA 61 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V FLF+IM+L+I RG+ F G++ + S + + ++ Sbjct: 62 VLFLFVIMLLEIPSAELR-AYYRGYSVLTFFGLIVVLIKQFGVALPFGSPNSQGAPYIYS 120 Query: 128 GN----NVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 N ++ NIG Y +YA L ++ +L +++ GA+VL Sbjct: 121 FNCTSESISNIGVAFYIRYADVLILNSLVLTIALFGALVLAHSR 164 >gi|86553036|gb|ABC98216.1| NADH dehydrogenase subunit 6 [Chlamydomonas incerta] Length = 162 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 5/152 (3%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 + + S V ++P S+ + F+N++ + ++LG EF+A++ L+VYVGA+ V FLF Sbjct: 9 LLCALLSIAVGYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLF 68 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 +IM+L+I + F+ ++ + S + + ++ Sbjct: 69 VIMLLEIPATELRAYSRGWSTLGIFVFVVNGVFQITPSM-----GPRGIITGLPGAESIT 123 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 N+G LY +A L ++ +L +++ GA + Sbjct: 124 NLGHALYLYFADLLILNSLVLTVALFGAFAIA 155 >gi|240266460|ref|YP_002970818.1| NADH dehydrogenase subunit 6 [Trichophyton mentagrophytes] gi|237781090|gb|ACR19583.1| NADH dehydrogenase subunit 6 [Trichophyton mentagrophytes] Length = 201 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 23/177 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F++II + +NP+ SV LI F + +L+G F+ + L+VY+GAV + Sbjct: 21 ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSIL 80 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSF-----FIGILAAELIVCASNFMV---------- 114 FLFI+M+++I I + + IL ++I F + Sbjct: 81 FLFILMLINIRISELVSTNNNYIPLAILSMITLVYILGQKIITNVVQFNILNSFTSSLFE 140 Query: 115 --------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +S + + IG ++Y+ Y+ L I ILLL+M+G+IV+ Sbjct: 141 KSFKESINYSNSLSWDTNLIDITHTSAIGNIMYSSYSLWLIIISLILLLAMVGSIVI 197 >gi|240266527|ref|YP_002970874.1| NADH dehydrogenase subunit 6 [Arthroderma obtusum] gi|237781129|gb|ACR19620.1| NADH dehydrogenase subunit 6 [Arthroderma obtusum] Length = 202 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 23/177 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + ++II + +NP+ SV LI F + +L+G F+ + L+VY+GAV + Sbjct: 22 ILALISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLILIGLTFIGISYLLVYIGAVSIL 81 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSF-----FIGILAAELIVCASNFMV---------- 114 FLFI+M+++I I + + IL ++I F + Sbjct: 82 FLFILMLINIRISELVSTNNNYIPLAILSMITLVYILGQKIITNIVQFNILNSLSSSLFE 141 Query: 115 --------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +S + + IG ++Y+ Y+ L I ILLL+M+G+IV+ Sbjct: 142 KSFKESINYSNSLSWDTNLIDITHTSAIGNIMYSSYSLWLIIISLILLLAMVGSIVI 198 >gi|294630838|ref|ZP_06709398.1| NADH dehydrogenase subunit [Streptomyces sp. e14] gi|292834171|gb|EFF92520.1| NADH dehydrogenase subunit [Streptomyces sp. e14] Length = 142 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 42/82 (51%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ + VT + +++ L+ A +LLL AEF+A + +++YVG Sbjct: 17 EIAFLLVGLATFGAALVTVTTKQLVHAALWLVVTLGGLAVEYLLLTAEFIAWVQVLIYVG 76 Query: 65 AVIVFFLFIIMMLDIDIEVAEP 86 +V+V LF +M+ I + Sbjct: 77 SVVVLLLFGLMLTKAPIGRSPD 98 >gi|240266713|ref|YP_002970790.1| NADH dehydrogenase subunit 6 [Trichophyton rubrum] gi|237781081|gb|ACR19575.1| NADH dehydrogenase subunit 6 [Trichophyton rubrum] Length = 201 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 23/177 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +F++II + +NP+ SV LI F + +++G F+ + L+VY+GAV + Sbjct: 21 ILAFISIILGIYTIVSKNPVVSVLFLIGLFSTISIYLIMIGLTFIGLSYLLVYIGAVSIL 80 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSF-----FIGILAAELIVCASNFMV---------- 114 FLFI+M+++I I + + IL ++I F + Sbjct: 81 FLFILMLINIRISELVSTNNNYIPLAILSMITLVYILGQKIITNVVQFNILNSFTSSLFE 140 Query: 115 --------FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 +S + + IG ++Y+ Y+ L I ILLL+M+G+IV+ Sbjct: 141 KSFKESINYSNSLSWDTNLIDITHTSAIGNIMYSSYSLWLIIISLILLLAMVGSIVI 197 >gi|254032034|ref|YP_654089.2| NADH dehydrogenase subunit 6 [Trichoplax adhaerens] Length = 284 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 44/61 (72%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ + N + SVF LI AF+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ Sbjct: 13 SAVTPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMI 72 Query: 78 D 78 Sbjct: 73 P 73 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 22/39 (56%), Positives = 28/39 (71%) Query: 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 G+N+E IG VLY Y Y + FILL++MIGAIVL L+ Sbjct: 241 GSNLEAIGSVLYINYYYVFILVSFILLVAMIGAIVLGLQ 279 >gi|15147304|ref|NP_150308.1| NADH dehydrogenase subunit 6 [Spizellomyces punctatus] gi|15100073|gb|AAK84237.1|AF404303_11 NADH dehydrogenase subunit 6 [Spizellomyces punctatus] Length = 260 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 51/95 (53%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +YL ++S+ +V + NPI+ + LI F++ + L ++L F+ + ++ Sbjct: 1 MSYICYVYYLIGITGLLSALVVASSLNPIHRIAFLILVFLSGSFLMIILDFYFLGLTYII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS 95 VYVGA+++ FLF+IMM+ I + + S Sbjct: 61 VYVGAIMILFLFVIMMVQIHLMPVTLSVTPRIISS 95 >gi|292385453|gb|ADE22013.1| NADH dehydrogenase subunit 6 [Lessonia nigrescens] Length = 311 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 52/106 (49%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L + + V + +NP+YS L+ F+ + + LLG EF+A++ L+VY GA Sbjct: 5 IIFILIAILGGTLGVKVTSTQNPVYSGLYLVLLFLLGSAISXLLGLEFIALLFLLVYAGA 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + V LF++MMLD+ K+ I + + I + Sbjct: 65 IAVLVLFVVMMLDVKAIERPWSVKKKRFFYLGILLFFSFSIAVIYS 110 >gi|254032050|ref|YP_001023812.2| NADH dehydrogenase subunit 6 [Placozoan sp. BZ49] Length = 254 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 47/76 (61%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S+ N + SVF LI F+ ++GLF++LG EF+ +I L+VYVGA+ + FLF+IMM+ Sbjct: 13 SAVTPTYSYNFLASVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMI 72 Query: 78 DIDIEVAEPRKKRGFL 93 + + K F+ Sbjct: 73 PGGDQKDKETKGYSFI 88 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 34/64 (53%) Query: 102 AAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 AA L + N ++ + + G N+E IG VLY Y Y + FILL++MIGAI Sbjct: 187 AAALNLAQQNPLLGPNDSFFTLNGSGGTNLEAIGSVLYINYYYAFILVSFILLVAMIGAI 246 Query: 162 VLML 165 VL Sbjct: 247 VLGR 250 >gi|289571365|ref|ZP_06451592.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T17] gi|289545119|gb|EFD48767.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis T17] Length = 119 Score = 68.5 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 48/83 (57%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ F++ S +A++ + VV N +YS L + A ++ A F+ ++ +VV Sbjct: 15 TGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVV 74 Query: 62 YVGAVIVFFLFIIMMLDIDIEVA 84 Y GAV++ FLF++M++ +D + Sbjct: 75 YTGAVMMLFLFVLMLIGVDSAES 97 >gi|188581794|ref|YP_001925239.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium populi BJ001] gi|179345292|gb|ACB80704.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methylobacterium populi BJ001] Length = 335 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 45/76 (59%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + F + +F+A+ + + T + S L+ +F+ AGLF+LL A+ + ++ +++Y Sbjct: 5 FELTAFLVCAFVAVAGALGMTTTMSMFRSGIFLMASFIGVAGLFILLSADLIGLLQVMMY 64 Query: 63 VGAVIVFFLFIIMMLD 78 +G +V LF+++++ Sbjct: 65 IGGFLVMILFMVLVMH 80 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 100 ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 + V ++ A + V ++ +G +L +Y E +GF++L+ + G Sbjct: 215 LALCVGAVLVGMLVLRPAWPAMPEAVPDADSARRVGHLLMEKYMVAFEGAGFLILIGIFG 274 Query: 160 AIVLML 165 A++L Sbjct: 275 AVLLAR 280 >gi|404356|gb|AAB27397.1| orf100 [Marchantia polymorpha] Length = 100 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 2/97 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+F +A++S L + +NP++SV I F N GL +LLG +F AM LVVYVGA Sbjct: 2 ILFYVFIILALVSGALGIRAKNPVHSVVFFILVFFNTFGLLVLLGLDFFAMFFLVVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102 VF LF++MML I IE R FIG++ Sbjct: 62 --VFILFVVMMLHIRIEEIHENVLRYLPIGGFIGLIF 96 >gi|15088741|ref|NP_150111.1| NADH dehydrogenase subunit 6 [Hyaloraphidium curvatum] gi|15077948|gb|AAK83433.1|AF402142_17 NADH dehydrogenase subunit 6 [Hyaloraphidium curvatum] Length = 165 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 1/141 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F + ++S LV+T R+PI SV L+ ++ GLFLL+ F+ + ++VY Sbjct: 1 MNYWLFQILLISIVVSGLLVMTSRSPINSVIYLVLVYLAGGGLFLLMDHTFLGLTLIIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 VGA+ + FLF + M+++ L L L ++ Sbjct: 61 VGAIAILFLFTVFMINLRSSTGSNSLNISQLLLILPALGLIFYLGGEQTDSAGLIFAPNW 120 Query: 122 SRLVFKGNNVENIGKVLYTQY 142 S L+ + ++ +G +++ Y Sbjct: 121 SNLLARPQEMQMLGDLIFNSY 141 >gi|11467094|ref|NP_042569.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|128811|sp|P10329|NU6M_CHLRE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|12507|emb|CAA38644.1| mitochondrial NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] gi|563697|gb|AAB93445.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] Length = 162 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 + + S V ++P S+ + F+N++ + ++LG EF+A++ L+VYVGA+ V FLF Sbjct: 9 LLCALLSIAVGYTKSPFMSLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLF 68 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 +IM+L+I + F+ I+ + S + + ++ Sbjct: 69 VIMLLEIPATELRAYSRGWSTLGIFVFIINGVFQITPSM-----GPRGIITGLPGAESIT 123 Query: 133 NIGKVLYTQYAYPLEISGFILLLSMIG 159 N+G LY +A L ++ +L +++ G Sbjct: 124 NLGHALYLYFADLLILNSLVLTVALFG 150 >gi|84508544|ref|YP_448709.1| NADH dehydrogenase subunit 6 [Dictyota dichotoma] gi|45925712|gb|AAS79093.1| NADH dehydrogenase subunit 6 [Dictyota dichotoma] Length = 273 Score = 67.7 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + F + + VV NP+YS+ L+ FV + + L G +++++I ++VY Sbjct: 2 FELYLFATVMSLFLALGLNVVISHNPVYSILYLVLFFVTGSSILALFGFDYLSLIFVLVY 61 Query: 63 VGAVIVFFLFIIMMLDID 80 VGA+ V FLF++M+LDI Sbjct: 62 VGAIAVLFLFVVMILDIK 79 >gi|73670844|ref|YP_306859.1| NADH dehydrogenase subunit J [Methanosarcina barkeri str. Fusaro] gi|72398006|gb|AAZ72279.1| F420H2 dehydrogenase subunit J [Methanosarcina barkeri str. Fusaro] Length = 96 Score = 67.7 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 46/85 (54%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ F++ + + + VVT ++ + + +LI A L++LL A+F+ +I ++VY Sbjct: 11 LKMAVFWVLAISTVFFAVFVVTAKDIVRAGLALIMCMFGIAALYILLNAQFLGIIQVLVY 70 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPR 87 +GA+ V LF +M+ +I Sbjct: 71 IGAIGVLILFAVMLTKHEIGGEPGE 95 >gi|226227800|ref|YP_002761906.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27] gi|226090991|dbj|BAH39436.1| NADH-quinone oxidoreductase chain J [Gemmatimonas aurantiaca T-27] Length = 169 Score = 67.7 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 2/146 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +F +A++S+ ++ ++ P+ +LI + ++ ++ LLG F+A +++YVGA Sbjct: 1 MILAVFGLLALVSAASMLVLKEPMRVALALITSMMSLGAIYGLLGVHFIAAFQVLIYVGA 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 V+VF +++IM+L + PR + G L + + + EL Sbjct: 61 VMVFMVYVIMLLQVRESPNNPRYSSLLVPGLVAGALLLAALAIGMSRPGV-PQAELPASS 119 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGF 151 E +Y E++ Sbjct: 120 QSFGLTE-FSTAFLREYWLAFELTSV 144 >gi|240266722|ref|YP_002970902.1| NADH dehydrogenase subunit 6 [Microsporum canis] gi|237781138|gb|ACR19628.1| NADH dehydrogenase subunit 6 [Arthroderma otae] Length = 201 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 23/177 (12%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + ++II + +NP+ SV LI F + +L+G F+ + L+VY+GAV + Sbjct: 21 IIALISIILGIYTIISKNPVVSVLFLIGLFSTISIYLILIGLTFIGLSYLLVYIGAVSIL 80 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI----------------------- 106 FLFI+M+++I I + I ++ Sbjct: 81 FLFILMLINIRISELVSTNNNYIPLAILSMITLVYILGQKIITNIIQYNILNSFSFSFFE 140 Query: 107 VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + +S + ++ IG V+Y+ Y+ L I ILLL+M+G+IV+ Sbjct: 141 KSFKESINYSNSLSWDTNLIDITHISAIGNVMYSSYSLWLIIISLILLLAMVGSIVI 197 >gi|15088716|ref|NP_150125.1| NADH dehydrogenase subunit 6 [Schizophyllum commune] gi|15077923|gb|AAK83409.1|AF402141_13 NADH dehydrogenase subunit 6 [Schizophyllum commune] Length = 215 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 59/125 (47%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + + SS L +T +NP+ SV LI FV AAG + +G F+ + +++Y Sbjct: 1 MANFIIDFLALGTLFSSILTITFKNPVISVIFLILTFVQAAGYLIFIGINFIGISYIIIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VGA+ V FLF+IMM+++++ I+++ + + + + Sbjct: 61 VGAIAVLFLFVIMMINLNLSEILETGNEYTKNLPLAIIISSLFMFIFGAPYILPYKSIIL 120 Query: 123 RLVFK 127 ++ Sbjct: 121 PNLWD 125 >gi|21228587|ref|NP_634509.1| NADH dehydrogenase subunit J [Methanosarcina mazei Go1] gi|20907081|gb|AAM32181.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] Length = 96 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 47/79 (59%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 +++ F L + + + + VV ++ + + +LI AGL++LL A+F+ +I ++VY Sbjct: 11 LETAVFGLLALVTVFFAIFVVIAKDVVRAGLALIMCMFGVAGLYILLNAQFLGVIQVLVY 70 Query: 63 VGAVIVFFLFIIMMLDIDI 81 +GA+ V LF +M+ +I Sbjct: 71 IGAIGVLILFAVMLTKREI 89 >gi|316935777|ref|YP_004110759.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rhodopseudomonas palustris DX-1] gi|315603491|gb|ADU46026.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Rhodopseudomonas palustris DX-1] Length = 168 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 4/140 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M SL A+IS+ L VT N ++++ L+ + A F LGA F A++ ++VY Sbjct: 1 MSSLLAIYAGAFALISAALSVTRPNAVHALLYLVVTLLALAVCFFALGAAFAAVLLILVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F++M L + E R++ G++ + +L + LI+ F F Sbjct: 61 AGAIVVLFVFVVMTLPVSPEAI-TRERALLRGAWPVPLLMSVLIIAPFVFGEFGLTAAGQ 119 Query: 123 RLVFKGNNVENIGKVLYTQY 142 + +GK+L+ + Sbjct: 120 PAPVSA---QEVGKLLFGPW 136 >gi|116754361|ref|YP_843479.1| NADH dehydrogenase subunit J [Methanosaeta thermophila PT] gi|116665812|gb|ABK14839.1| NADH dehydrogenase subunit J [Methanosaeta thermophila PT] Length = 96 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 42/79 (53%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ F S + + + L V RN ++S LI +F A L++ L A F+ + ++VY Sbjct: 12 IELGVFATLSVLILGLAVLTVYSRNIVHSALYLIGSFAGVAALYISLNAPFLGVAQVLVY 71 Query: 63 VGAVIVFFLFIIMMLDIDI 81 +GAV V LF +M+ I Sbjct: 72 IGAVGVLILFAVMLTRRTI 90 >gi|4761220|gb|AAD29282.1|AF113909_1 NADH dehydrogenase ND6 subunit [Suaeda japonica] Length = 146 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84 NPI+S FSL V + ++L + FVA L++YVGA+ V +F +M ++ Sbjct: 29 FTNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIYVGAINVLIIFSVMFMN--GPEY 86 Query: 85 EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG--------NNVENIGK 136 + +G ++ L V ++ ++ ++ + N + IG Sbjct: 87 DKNYHLWTVGDGITSLVCTSLFVLLTSTILNTSWYGIIWTTKSNQILEQDLINTSQQIGI 146 >gi|268627911|gb|ACZ13378.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1d] Length = 78 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 32/74 (43%), Positives = 53/74 (71%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVYVGAI 63 Query: 67 IVFFLFIIMMLDID 80 + FLF+IM++ Sbjct: 64 AILFLFVIMLIQQP 77 >gi|22711916|ref|NP_683855.1| NADH dehydrogenase subunit 6 [Chaetosphaeridium globosum] gi|75272576|sp|Q8M9T8|NU6C_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 6; AltName: Full=NADH-plastoquinone oxidoreductase subunit 6 gi|22416920|gb|AAM96520.1| subunit 6 of NADH-plastoquinone oxidoreductase [Chaetosphaeridium globosum] Length = 179 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 1/113 (0%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + ++ F + + VV N IYS L F++ A L+LLLG+EF+++ +++YV Sbjct: 6 AQITLFVLDFFIFVGALGVVFFNNIIYSALFLGLTFLSVALLYLLLGSEFLSVAQVIIYV 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVF 115 GA+ V +F IM+++ + L SF + + IV + Sbjct: 66 GAINVLIVFAIMLVNKPEFDKKDMIWVPIDLKSFCVNFILFSTIVTMIVTTPW 118 >gi|284164398|ref|YP_003402677.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Haloterrigena turkmenica DSM 5511] gi|284014053|gb|ADB60004.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Haloterrigena turkmenica DSM 5511] Length = 91 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 50/85 (58%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++++ F F+ + ++S+ VV + P ++ L A ++ A F++L AEFVAM+ ++VY Sbjct: 2 LETIAFAAFALVTLLSALGVVLLEEPWHAALMLGVALMSIAVHFVMLAAEFVAMMQILVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPR 87 VG V+V F +M+ + ++ Sbjct: 62 VGGVLVLITFAVMLTQREDTTSDSE 86 >gi|30315629|ref|NP_847980.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL94] gi|30230282|gb|AAO62892.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL94] Length = 201 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 34/183 (18%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F + + LV+ R+PI SV L ++ G+FLLL F+ + ++VYVGA+ + F Sbjct: 10 FLVLIGLCGVLVIVSRSPINSVLFLCGMYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILF 69 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA--------------------- 109 LF I M+++ + + + A I A Sbjct: 70 LFTIFMINVRLTLQLGSFASPLAAILLLAGFAFYFIFFADLSFSQDLPVLSSLFGSSQTI 129 Query: 110 ---SNFMVFSAEGE----------LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156 +V S E S L+ + +++ + +++ Y L + GF+LL+ Sbjct: 130 VNNDTTLVTSGNWESNFRSIYASDWSHLLGRPSDLTMLANMIFYAYPLALILVGFLLLVV 189 Query: 157 MIG 159 M+ Sbjct: 190 MVA 192 >gi|254033624|ref|YP_003029829.1| NADH dehydrogenase subunit 6 [Dunaliella salina] gi|246880710|gb|ACS95023.1| NADH dehydrogenase subunit 6 [Dunaliella salina] Length = 157 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + Y F + S LV +N S+ I ++N+ + L LG EF+A+I ++VYVGA Sbjct: 2 ILEYSFIALLAFLSILVSQTKNVFMSLMYSILLYINSFVVLLSLGFEFLAIINVLVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + V FLF+IM+L+I RG+ +G L+ L ++ +F+ + Sbjct: 62 LAVLFLFVIMLLEIP-STELRAYYRGYSVLAMLGFLSVRLFSVNNSHTIFT-------FI 113 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 ++ N+G Y YA L ++ IL +++ GA+VL Sbjct: 114 PTLESISNVGYAFYIVYADVLVLNSLILTIALFGALVLAH 153 >gi|29126612|ref|NP_803515.1| NADH dehydrogenase subunit 6 [Monoblepharella sp. JEL15] gi|29029510|gb|AAO64960.1| NADH dehydrogenase subunit 6 [Monoblepharella sp. JEL15] Length = 193 Score = 64.7 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 26/175 (14%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F + + LV+ R+PI SV L ++ G+FLLL F+ + ++VYVGA+ + F Sbjct: 10 FLVLIGLCGVLVIVSRSPINSVLFLCGLYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILF 69 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE------------ 118 LF I M+++ + + + A I A Sbjct: 70 LFTIFMINVRLTLQLGSFASPVAAILLLTGFAIYFIFFADLSFSQDLPLLSSIFSSTDAS 129 Query: 119 --------------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 + S L+ + +++ + +++ Y L + GF+LL+ M+ Sbjct: 130 SLSSWESDLRSVYASDWSHLLGRPSDLTMLANMIFHAYPLALILVGFLLLVVMVA 184 >gi|312183561|gb|ADQ42350.1| NADH:ubiquinone oxidoreductase J [Methanosaeta harundinacea] Length = 99 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 44/83 (53%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ F L + + + S L V RN ++S L+ +F A L++ L A FV + ++VY Sbjct: 14 IELGAFSLLAVIILGLSILTVYSRNIVHSGLYLLGSFAAVAALYIFLNATFVGVAQVLVY 73 Query: 63 VGAVIVFFLFIIMMLDIDIEVAE 85 +GAV V LF IM+ + E Sbjct: 74 IGAVGVLILFAIMLTKKTLMEEE 96 >gi|60117148|ref|YP_209611.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum] gi|51339712|gb|AAU00626.1| NADH dehydrogenase subunit 6 [Polysphondylium pallidum] Length = 302 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 34/83 (40%), Positives = 49/83 (59%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPIYSV +LI F A + ++L EF+A I ++V VGAV V FLFIIMM++I+I + Sbjct: 25 NPIYSVLNLIIIFWCYACILIILDMEFLACIFILVNVGAVAVLFLFIIMMININIVEIKD 84 Query: 87 RKKRGFLGSFFIGILAAELIVCA 109 K+ + F+ + LI Sbjct: 85 NLKKYYPFLIFLTLNVIGLISLI 107 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM--- 164 A N + F + + ++++IG +LY + ++ ILL++M+G I + Sbjct: 202 AINSIEFVQYENIYEKFIQTTDIKHIGSNLLYASNSIWFILACLILLVAMVGVIYITEEL 261 Query: 165 --LRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 R K QD+ +Q+ + +I VKS K Sbjct: 262 LIKRKLEGNKSQDLFEQISKDYIGNIKFYDVKSTK 296 >gi|91975814|ref|YP_568473.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisB5] gi|91682270|gb|ABE38572.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisB5] Length = 168 Score = 64.3 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 72/140 (51%), Gaps = 4/140 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L A++S+ + VT N ++++ L+ + A F LGA F A++ +++Y Sbjct: 1 MSLLLAIYAGAFALVSAAIAVTRPNAVHALLYLVVTLLALAVAFFALGAAFAAVLLIMIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F++M L I E + R++ G++ + +L + LI+ VF G + Sbjct: 61 AGAIVVLFVFVVMTLPISPE-SMTRERASLRGAWPVPLLLSVLIIAP---FVFGEFGIAA 116 Query: 123 RLVFKGNNVENIGKVLYTQY 142 + + +G++L+ + Sbjct: 117 NTAAAPVSAQQVGRLLFGPW 136 >gi|218509387|ref|ZP_03507265.1| hypothetical protein RetlB5_18674 [Rhizobium etli Brasil 5] Length = 118 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 39/50 (78%), Positives = 42/50 (84%) Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 SV LI F NAAGLFLLLGAEF+AMI LVVYVGAV V FLF++MMLDID Sbjct: 57 SVLFLILVFFNAAGLFLLLGAEFLAMILLVVYVGAVAVLFLFVVMMLDID 106 >gi|15147287|ref|NP_150360.1| NADH dehydrogenase subunit 6 [Rhizophydium sp. 136] gi|15100129|gb|AAK84290.1|AF404306_32 NADH dehydrogenase subunit 6 [Rhizophydium sp. 136] Length = 269 Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 47/72 (65%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L + I+SSFL++T NP+ + LI F+ +A ++LLL F+ + ++VYVGA+ + Sbjct: 9 LICTIGILSSFLILTSLNPVTRLVLLIIVFIMSAFIYLLLDFYFLGLTYIIVYVGAIAIL 68 Query: 70 FLFIIMMLDIDI 81 FLF+IMM ++ Sbjct: 69 FLFVIMMSEVKE 80 >gi|309773934|ref|NP_075423.2| ND6 protein [Yarrowia lipolytica] gi|54036245|sp|Q9B6E9|NU6M_YARLI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|12718792|emb|CAC28088.2| ND6 protein [Yarrowia lipolytica] Length = 185 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 15/184 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F + F+AI+ + +++ +NP+ S+ +I FV AA L+G +++ ++ Sbjct: 2 MYLTYYFIEITIFLAILCTIFIISAKNPMVSILYMIALFVIAAMYLYLIGLGIFSLLYIM 61 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 +Y+GA+ V FLFII +LDI+ + L I ++ + + Sbjct: 62 IYIGAIAVLFLFIITLLDINSTELSVKSNIRDLPLVLISLIVLTISGLMIYSNDSILINK 121 Query: 121 LSRLVFKGNNV---------------ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 L N IG VL T A+ L + +LLL +IG I + + Sbjct: 122 LLEAFGNDYNTIITQDWFNIENTTLLTTIGNVLLTNNAFILLVLAIVLLLGIIGPISITM 181 Query: 166 RHRR 169 +H+ Sbjct: 182 KHKE 185 >gi|169235559|ref|YP_001688759.1| NADH dehydrogenase subunit J [Halobacterium salinarum R1] gi|167726625|emb|CAP13410.1| NADH dehydrogenase-like complex subunit J1 [Halobacterium salinarum R1] Length = 90 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 44/77 (57%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++L F LF+ + + SS VV VR+ +S L A ++ +++L A F+ + ++ Sbjct: 5 MPYETLAFALFAALTVASSLGVVLVRDVWHSALLLGIALLSIGVHYVMLQAPFLMAMQIL 64 Query: 61 VYVGAVIVFFLFIIMML 77 VYVG V++ F +M+ Sbjct: 65 VYVGGVLILITFAVMLT 81 >gi|222479144|ref|YP_002565381.1| NADH dehydrogenase subunit J [Halorubrum lacusprofundi ATCC 49239] gi|222452046|gb|ACM56311.1| NADH dehydrogenase subunit J [Halorubrum lacusprofundi ATCC 49239] Length = 88 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV ++ F LF+ + + VV R+ ++ L A + A +++L AEF+A + ++ Sbjct: 1 MVYATIAFGLFAAVTLAFGLGVVLARDVFHAALLLGGALTSVAVHYVMLQAEFIAAMQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVA 84 VYVG V++ F +M+ D E Sbjct: 61 VYVGGVLILVTFAVMLTRSDTETE 84 >gi|115523736|ref|YP_780647.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisA53] gi|115517683|gb|ABJ05667.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisA53] Length = 166 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 11/140 (7%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI- 81 VT N ++S+ L+ A + A F LGA F + ++VY GA++V F+F+ M + D Sbjct: 21 VTRSNVMHSLLYLLAALLALAAAFFALGAGFAGALLIIVYAGAIVVLFVFVAMTVGTDDA 80 Query: 82 --EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY 139 E + +R + I IL A + + S +S + +G++L+ Sbjct: 81 AMERERDQLERSWPMPAAISILVAAPFLFGIGDPIPSHATPVS--------AQAVGRLLF 132 Query: 140 TQYAYPLEISGFILLLSMIG 159 +A+ +E++ F+LL +IG Sbjct: 133 GPWAWAIELASFLLLAGLIG 152 >gi|29126634|ref|NP_803496.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL105] gi|29029490|gb|AAO64941.1| NADH dehydrogenase subunit 6 [Harpochytrium sp. JEL105] Length = 203 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 36/185 (19%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F + +S LV+ R+PI SV L ++ G+FLLL F+ + ++VYVGA+ + F Sbjct: 10 FLVLIGLSGVLVIVSRSPINSVLFLCGLYLAGGGIFLLLDHYFLGLTLIIVYVGAIAILF 69 Query: 71 LFIIMMLDID--IEVAEPRKKRGFLGSFFIGILAAELIVCASNF----MVFSAEGELSRL 124 LF I M+++ +++ L L S++ ++ S G L Sbjct: 70 LFTIFMINVRLTLQLGSFASPLAAFALLIGFGLYFLLFADFSSYKDLPILSSILGSSHSL 129 Query: 125 VFKGNNVE------------------------------NIGKVLYTQYAYPLEISGFILL 154 G N + + +++ Y L + GF+LL Sbjct: 130 PVDGINSQILPDGAWENSLRSLYASDWSHLLGRPSDLTMLANMIFYAYPLALILVGFLLL 189 Query: 155 LSMIG 159 + M+ Sbjct: 190 VVMVA 194 >gi|20090360|ref|NP_616435.1| NADH dehydrogenase subunit J [Methanosarcina acetivorans C2A] gi|19915365|gb|AAM04915.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina acetivorans C2A] Length = 96 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 45/79 (56%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 ++ F L +F+ + + VV ++ + + +LI A L++LL A+F+ +I ++VY Sbjct: 11 LEMAVFGLLAFVTVFFAIFVVIAKDVVRAGLALIMCMFGVAALYILLNAQFLGIIQVLVY 70 Query: 63 VGAVIVFFLFIIMMLDIDI 81 +GA+ V LF +M+ + Sbjct: 71 IGAIGVLILFAVMLTKRHL 89 >gi|12895|emb|CAA31402.1| NADH dehydrogenase subunit 6 [Chlamydomonas reinhardtii] Length = 137 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKR 90 S+ + F+N++ + ++LG EF+A++ L+VYVGA+ V FLF+IM+L+I + Sbjct: 2 SLMYSVMLFINSSFVLMMLGFEFLALVNLLVYVGALAVLFLFVIMLLEIPATELRAYSRG 61 Query: 91 GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISG 150 F+ I+ + S + + ++ N+G LY +A L ++ Sbjct: 62 WSTLGIFVFIINGVFQITPSM-----GPRGIITGLPGAESITNLGHALYLYFADLLILNS 116 Query: 151 FILLLSMIGAIVLM 164 +L +++ G + Sbjct: 117 LVLTVALFGCAAIA 130 >gi|294496243|ref|YP_003542736.1| hypothetical protein Mmah_1595 [Methanohalophilus mahii DSM 5219] gi|292667242|gb|ADE37091.1| hypothetical protein Mmah_1595 [Methanohalophilus mahii DSM 5219] Length = 90 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 46/74 (62%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 ++L F++ + + I S V ++ + + +L+F+ AGLF+ L A+F+ ++ ++VYV Sbjct: 6 EALVFFILAAVVIFFSLAAVLSKDIVRAALALVFSMFTVAGLFITLNAQFLGVVQILVYV 65 Query: 64 GAVIVFFLFIIMML 77 GA+ V LF +M+ Sbjct: 66 GAIGVLILFAVMLT 79 >gi|73658456|emb|CAI99038.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] Length = 145 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIG 135 + L + S + S G + +N + IG Sbjct: 90 FNLWTIGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIG 145 >gi|73658454|emb|CAI99036.1| NADH dehydrogenase subunit 6 [Arabidopsis thaliana] Length = 145 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 NPI+S FSL F V + L++L + FVA L++YVGA+ V +F +M ++ D E + Sbjct: 31 NPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMN-DSEYSTD 89 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK-------GNNVENIG 135 + L + S + S G + +N + IG Sbjct: 90 FNLWTIGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIG 145 >gi|298674251|ref|YP_003726001.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Methanohalobium evestigatum Z-7303] gi|298287239|gb|ADI73205.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methanohalobium evestigatum Z-7303] Length = 105 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 46/74 (62%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F L S + I+ S L + R+ + + SLI + + AGL++LL A+F+ ++ ++VYVGAV Sbjct: 24 AFALLSLIIILFSLLTIVSRDVVRAAISLIVSLFSVAGLYILLNAQFLGVVQVLVYVGAV 83 Query: 67 IVFFLFIIMMLDID 80 V LF +M+ + Sbjct: 84 GVLILFGVMLTKTE 97 >gi|108802981|ref|YP_642918.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Rubrobacter xylanophilus DSM 9941] gi|108764224|gb|ABG03106.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rubrobacter xylanophilus DSM 9941] Length = 168 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 3/170 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M Q+LF F A+ +V + + S +L+F+ +FL + AEF+ ++ ++ Sbjct: 1 MSAQALFTGFFGVAAVWFGVVVFRTSSMVRSALALLFSQAAIGAMFLAMQAEFLGVLQVM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 + + + +F++M + + E S G LAA + + G Sbjct: 61 MMATEMSIMAIFMVMYMMDPGGLGEMEMTHQKRASIAAGALAALAAAGVAALTDW---GP 117 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 + E +G + + E +G +L +MI A + + RR Sbjct: 118 AAAAPPAAEQTERLGAEMLGRSMLIFETAGVTILTAMIAATAVAIERRRR 167 >gi|20090361|ref|NP_616436.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina acetivorans C2A] gi|19915366|gb|AAM04916.1| F(420)H(2) dehydrogenase, subunit FpoJ [Methanosarcina acetivorans C2A] Length = 86 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%) Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152 + + +L +IV + EL +N++ IG +++TQY P E+ + Sbjct: 9 PLALLVSLLFVAVIVTGVFGTSWHTVSELPENPADPSNIQGIGMLIFTQYVVPFEVLSIV 68 Query: 153 LLLSMIGAIVLMLRHRRD 170 LL S+IGAI + Sbjct: 69 LLASLIGAIYMAKGEGNR 86 >gi|257051783|ref|YP_003129616.1| NADH dehydrogenase subunit J [Halorhabdus utahensis DSM 12940] gi|256690546|gb|ACV10883.1| NADH dehydrogenase subunit J [Halorhabdus utahensis DSM 12940] Length = 90 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 47/85 (55%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V++ + F LF+ + +S VV VR+ ++ L A ++ A +++ A FVA + ++V Sbjct: 3 VLELIAFGLFALTTVGASLGVVLVRDVWHAALMLGIALLSVAVFYVMNQAPFVAAMQVLV 62 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEP 86 YVG V++ F +M+ + ++ Sbjct: 63 YVGGVLILISFAVMLTRRNDPDSDG 87 >gi|257387969|ref|YP_003177742.1| NADH dehydrogenase subunit J [Halomicrobium mukohataei DSM 12286] gi|257170276|gb|ACV48035.1| NADH dehydrogenase subunit J [Halomicrobium mukohataei DSM 12286] Length = 90 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 50/82 (60%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +++ F LF+ + I SS+ VV VR+ +S L A ++ A +L+L AEFVA + ++VYV Sbjct: 6 ETIAFVLFAVVTIASSWGVVLVRDVWHSALLLGVALLSVAVHYLMLRAEFVAAMQILVYV 65 Query: 64 GAVIVFFLFIIMMLDIDIEVAE 85 G V++ F +M+ D V E Sbjct: 66 GGVLILITFAVMLTRKDESVVE 87 >gi|15789838|ref|NP_279662.1| NADH dehydrogenase subunit J [Halobacterium sp. NRC-1] gi|10580232|gb|AAG19142.1| conserved hypothetical protein [Halobacterium sp. NRC-1] Length = 86 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 44/77 (57%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++L F LF+ + + SS VV VR+ +S L A ++ +++L A F+ + ++ Sbjct: 1 MPYETLAFALFAALTVASSLGVVLVRDVWHSALLLGIALLSIGVHYVMLQAPFLMAMQIL 60 Query: 61 VYVGAVIVFFLFIIMML 77 VYVG V++ F +M+ Sbjct: 61 VYVGGVLILITFAVMLT 77 >gi|301353200|ref|YP_003795198.1| Nad6p [Candida subhashii] gi|262410217|gb|ACY66210.1| Nad6p [Candida subhashii] Length = 149 Score = 61.6 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 7/150 (4%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 I+S +++ +PI+S+ S++ F+ AA L G + ++ +++YVGA+ + FLFI+ + Sbjct: 7 IASLMILADLSPIHSILSMLVLFITAALSLYLAGYHLMGILYVLIYVGAIAILFLFIVSL 66 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 L I + + + ++ +L + + + L +G Sbjct: 67 LKIKHLANTVKTSPLVVVALATVLIPFDLTLGERRVVEEAPSLAYQELSH-------VGT 119 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 LY A L ++G IL+LS+IGAI + R Sbjct: 120 YLYCDSAIMLVVTGVILILSIIGAIAVTRR 149 >gi|73670843|ref|YP_306858.1| F420H2 dehydrogenase subunit [Methanosarcina barkeri str. Fusaro] gi|72398005|gb|AAZ72278.1| F420H2 dehydrogenase subunit [Methanosarcina barkeri str. Fusaro] Length = 83 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152 +F + +L ++V + ++ EL + +N+E IG +++TQY P E+ + Sbjct: 6 PLAFLVVLLFTAIVVIGAFGTSWNTVSELPQSPADQSNIEGIGMLIFTQYVAPFEVLSIV 65 Query: 153 LLLSMIGAIVLMLRHRRD 170 LL S+IGAI L Sbjct: 66 LLASLIGAIYLAKGEGNR 83 >gi|300711695|ref|YP_003737509.1| NADH dehydrogenase subunit J [Halalkalicoccus jeotgali B3] gi|299125378|gb|ADJ15717.1| NADH dehydrogenase subunit J [Halalkalicoccus jeotgali B3] Length = 102 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 47/78 (60%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+++ F LF+ + + SS VV VR+ ++ L A ++ A ++ L AEF+A + ++ Sbjct: 1 MVLETAAFVLFAGVTLASSLGVVLVRDVWHAALLLGVALLSVAIHYVTLTAEFLAAVQIL 60 Query: 61 VYVGAVIVFFLFIIMMLD 78 VYVG V++ F +M+ Sbjct: 61 VYVGGVLILITFAVMLTH 78 >gi|268627916|gb|ACZ13382.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D1a] gi|268627918|gb|ACZ13384.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D2d] gi|268627919|gb|ACZ13385.1| NADH dehydrogenase subunit 6 [Lepidisis sp. D2e] Length = 74 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 53/71 (74%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVYVGAI 63 Query: 67 IVFFLFIIMML 77 + FLF+IM++ Sbjct: 64 AILFLFVIMLI 74 >gi|268627920|gb|ACZ13386.1| NADH dehydrogenase subunit 6 [Lepidisis sp. C1a] Length = 71 Score = 60.8 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 50/68 (73%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFII 74 + FLF+I Sbjct: 64 AILFLFVI 71 >gi|90425538|ref|YP_533908.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisB18] gi|90107552|gb|ABD89589.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris BisB18] Length = 155 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 MA+I++ L VT N ++++ L+ + A F L A F A++ ++VY GA+IV F+F+ Sbjct: 1 MALIAAALAVTRYNVVHALLYLLAMLLALAASFFALRAAFAAVLLIMVYAGAIIVLFVFV 60 Query: 74 IMMLDIDIEVAEPRK---KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 +M + E + +R + I +L A + ++ Sbjct: 61 VMAVGTSPEAIARERAMLRRSWPMPAAISVLVAAPFLFGIGEQAPGNTAPIA-------- 112 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIG 159 + +G++L+ +A+ +E++ F+LL +IG Sbjct: 113 AQAVGRLLFGPWAWAIELASFLLLAGLIG 141 >gi|268627914|gb|ACZ13380.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1b] gi|268627915|gb|ACZ13381.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1a] gi|268627917|gb|ACZ13383.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D1a] Length = 71 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 50/68 (73%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVYVGAI 63 Query: 67 IVFFLFII 74 + FLF+I Sbjct: 64 AILFLFVI 71 >gi|242090093|ref|XP_002440879.1| hypothetical protein SORBIDRAFT_09g012611 [Sorghum bicolor] gi|241946164|gb|EES19309.1| hypothetical protein SORBIDRAFT_09g012611 [Sorghum bicolor] Length = 67 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 + S A++S +VV +NP++SV I F + +GL +LLG +F MI VV++GA+ Sbjct: 1 ILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFYDTSGLLILLGLDFSTMIFPVVHIGAI 60 Query: 67 IVFFL 71 V FL Sbjct: 61 AVSFL 65 >gi|225257|prf||1211235CR ORF 99B Length = 99 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%) Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKV 137 D + S FI ++ + + ++ F +N + IG Sbjct: 12 DFHLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDF-ISNSQQIGIH 70 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLR 166 L T + P E+ ILL+++IGAI + + Sbjct: 71 LSTDFFLPFELISIILLVALIGAIAVARQ 99 >gi|289809208|ref|ZP_06539837.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 69 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 39/64 (60%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 NP++++ L+ + + +G+F LGA F + ++VY GA++V F+F++MML++ Sbjct: 6 LSTNPVHALLYLVISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSE 65 Query: 84 AEPR 87 E Sbjct: 66 IEQE 69 >gi|294496242|ref|YP_003542735.1| hypothetical protein Mmah_1594 [Methanohalophilus mahii DSM 5219] gi|292667241|gb|ADE37090.1| hypothetical protein Mmah_1594 [Methanohalophilus mahii DSM 5219] Length = 117 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 F+I + ++I E R L + +G+ A ++V ++ +L + + +N+ Sbjct: 21 FLIRLAHMEIPPLE-VIGRAILRASIVGLFLAVVLVSLYG-TSWTTVDQLPQNMEDQSNI 78 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + IG +++T + P E+ +LL S++GAI + Sbjct: 79 KAIGTLIFTDFVVPFEVLSIVLLSSLMGAIYMAK 112 >gi|86748480|ref|YP_484976.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris HaA2] gi|86571508|gb|ABD06065.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Rhodopseudomonas palustris HaA2] Length = 168 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 4/140 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M A++S+ + VT N ++++ L+ + A F LGA F A++ +++Y Sbjct: 1 MSLWLAIYAGGFALVSAAIAVTRPNAVHALLYLVVMLLALAVAFFALGAAFAAVLLILIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 GA++V F+F++M L I E R++ G G++ + +L + LI+ F F G + Sbjct: 61 AGAIVVLFVFVVMTLPISPESI-TRERAGLRGAWPLPLLLSVLILAPFLFGEFGIAGNTA 119 Query: 123 RLVFKGNNVENIGKVLYTQY 142 + +G++L+ + Sbjct: 120 AAPVSA---QQVGRLLFGPW 136 >gi|268627910|gb|ACZ13377.1| NADH dehydrogenase subunit 6 [Lepidisis sp. B1b] gi|268627913|gb|ACZ13379.1| NADH dehydrogenase subunit 6 [Keratoisis sp. B1c] Length = 70 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 49/67 (73%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVYVGAI 63 Query: 67 IVFFLFI 73 + FLF+ Sbjct: 64 AILFLFV 70 >gi|126640818|ref|YP_001083802.1| NADH dehydrogenase I chain J [Acinetobacter baumannii ATCC 17978] Length = 130 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Query: 47 LLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 +++GA F + ++VY GA++V F+F++MML++ E +K ++ L + L+ Sbjct: 1 MIVGAPFAGALEIIVYAGAIMVLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLL 60 Query: 107 VCASNFMVFSAEGELS-RLVFKGNNVENIGKVLYTQYAYPLE 147 +M+ +S L + + +G+ L+T Y +E Sbjct: 61 GLLLVWMLGGEYTTISAPLGAQVIGPKVVGQALFTHYLLLVE 102 >gi|329889073|ref|ZP_08267416.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Brevundimonas diminuta ATCC 11568] gi|328844374|gb|EGF93938.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein [Brevundimonas diminuta ATCC 11568] Length = 171 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 65/160 (40%), Gaps = 2/160 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q +F F A+ +V + + S +L+F+ +FL++ AEF+ ++ ++ Sbjct: 1 MTVQMIFLAFFGAAAVWFGVVVFRTHSMVRSALALLFSQTAIGAMFLVMQAEFLGVLQIM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 + + V +F++M + + + S + G + + + Sbjct: 61 MMATEMSVMAIFMVMFMMDPGGMGKMDMTHQKRLSLWAGGIGLLAALLLVWLPDWGPVAL 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 + ++G+ L + + + +G +L +MI A Sbjct: 121 SVPGAHEQ--AADLGRELLGRSMFIFQSAGLTILTAMIAA 158 >gi|224474105|gb|ACN49296.1| Nad6p [Candida orthopsilosis] Length = 155 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 71/149 (47%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 ISS L + + +P+ S+ LI FV+AA G + ++ +++YVGA+ + FLFI+ + Sbjct: 7 ISSILAIGLLSPVQSIVCLIALFVSAAISLYSNGFVLMGILYVLIYVGAIAILFLFILSL 66 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 L+I+ F I + + L+ + +G Sbjct: 67 LNIEYNYKGTIHPLIFTILLICLIPLDLSYETYGIVENVNIAYPFNGLLDWDLELSTVGT 126 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165 +LYT+YA P+ G IL+LS+IGAI + Sbjct: 127 LLYTEYAIPMIFIGLILILSVIGAIAITK 155 >gi|268627909|gb|ACZ13376.1| NADH dehydrogenase subunit 6 [Isidella sp. I3b] Length = 70 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/67 (46%), Positives = 50/67 (74%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFFLFI 73 + FLF+ Sbjct: 64 AILFLFV 70 >gi|168700376|ref|ZP_02732653.1| hypothetical protein GobsU_12670 [Gemmata obscuriglobus UQM 2246] Length = 410 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 56/119 (47%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 V+ + F+LFS A++ ++V +NP + F ++ GLFLLL A F+ T+++ Sbjct: 68 VIGTALFWLFSAGALVFGTVLVVQKNPARGAIAFAFVILSVCGLFLLLAAPFLMAATVII 127 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 Y GA+IV FLF++M+ R + GSF ++ GE Sbjct: 128 YAGAIIVTFLFVLMLSQAGTSNENDRTREPLYGSFAGFAFVGLVLFTLYQTSQRPKPGE 186 Score = 54.6 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 28/42 (66%) Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 NV N+G VLY+Q+ +E++G +LL+++IGA+ + R Sbjct: 365 LPAGNVRNLGFVLYSQHLLAVELAGTLLLVAVIGAVAITHRK 406 >gi|21228586|ref|NP_634508.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] gi|20907080|gb|AAM32180.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] Length = 83 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%) Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152 +F + +L ++V + ++ EL +N+E IG +++T + P E+ + Sbjct: 6 PLAFLVCLLFVAVVVTGAFGTSWNTVSELPENPADPSNIEGIGMLIFTHFVAPFEVLSIV 65 Query: 153 LLLSMIGAIVLMLRHRRD 170 LL S+IGAI + Sbjct: 66 LLASLIGAIYMAKGEGNR 83 >gi|55378234|ref|YP_136084.1| NADH dehydrogenase subunit J [Haloarcula marismortui ATCC 43049] gi|55230959|gb|AAV46378.1| NAD(P)H-quinone oxidoreductase chain 6 [Haloarcula marismortui ATCC 43049] Length = 89 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 47/82 (57%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 +S+ F LF+ + + S+ VV VR+ +S L + ++ A +++ A FVA + ++VYV Sbjct: 5 ESIAFALFAIVTVGSAAGVVLVRDVWHSALLLGVSLISVAVFYVMNQAAFVATMQILVYV 64 Query: 64 GAVIVFFLFIIMMLDIDIEVAE 85 G V++ F +M+ D V E Sbjct: 65 GGVLILITFAVMLTREDESVIE 86 >gi|67968339|dbj|BAE00239.1| NADH dehydrogenase subunit 6 [Selaginella uncinata] Length = 179 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 15/161 (9%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 + S V + N ++ + L A+F A+ + ++ GAV V LF M Sbjct: 20 VPGSLGVASPANIVHPALPPGSVSACTSLPHPSLNADFAAVAQIPIHAGAVNVPILFAAM 79 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE---LSRLVF------ 126 V++P+ + G+ +A + + + +S +V Sbjct: 80 ------PVSKPKFPHPAPWTVGDGMTSAPRTSASPPPIDVIPDTSRYGMSPIVLRDAGGS 133 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 +V IG T+ P E +LL++ +GAI++ R Sbjct: 134 PAYSVRRIGYDSPTESLLPSEPPPIVLLVAPVGAIIVARRE 174 >gi|301353474|ref|YP_003795695.1| NADH dehydrogenase subunit 6 [Phakopsora meibomiae] gi|253807598|gb|ACT36177.1| NADH dehydrogenase subunit 6 [Phakopsora meibomiae] Length = 194 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 28/178 (15%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 +V+T +P+ SV LI F+ A + +++++ ++VYVGA+IV LF+I+++++ Sbjct: 14 LIVITSTSPVTSVVYLITVFLLVAVYLVFNNIVYISLVLVIVYVGAIIVLILFVIIIINL 73 Query: 80 DIEVAEPRKKRGFLGSFFIGIL-------------AAELIVCASNFMVFSAEGELSRLVF 126 G+ I I+ + + + +A + +V Sbjct: 74 QDLRTTQNIAWSRWGASIIFIVIIINMDMAHWNADILPMFQYITISISKNAWSSNNWIVE 133 Query: 127 KGNN---------------VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 N ++++G LYT + I+ F+ +LSM+G IV+ R Sbjct: 134 NTTNMVFNSSDMNLFDLSQIQSLGLSLYTHSFIYIIIASFVFILSMVGPIVITSNKSR 191 >gi|301353313|ref|YP_003795385.1| NAD6 [Phakopsora pachyrhizi] gi|251765326|gb|ACT15479.1| NAD6 [Phakopsora pachyrhizi] Length = 189 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 25/176 (14%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 +V+T +P+ SV LI F+ A + +++++ ++VYVGA+IV LF+I+++++ Sbjct: 14 LIVITSTSPVTSVVYLITVFLLVAIYLVFNNIVYISLVLVIVYVGAIIVLILFVIIIINL 73 Query: 80 -DIEVAEPRKKRGFLGSFF----------------IGILAAELIVCASNFMVFSAEGELS 122 D+ + ++ S I + + + S S + Sbjct: 74 QDLRTTQNIAWSRWVASIIFIVIIINTDMAHWNADILSMFQYITISISKNAWSSNNWITT 133 Query: 123 RLVFKG--------NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 +VF ++++++G LYT + ++ F+ +LSM+G IV+ R Sbjct: 134 NMVFNPSDMNLFDLSHIQSLGLSLYTHSFIYIILASFVFILSMVGPIVITSNKSRG 189 >gi|4588017|gb|AAD25954.1|AF087657_1 NADH-ubiquinone oxidoreductase chain 6 [Agrocybe aegerita] Length = 139 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 53/113 (46%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 + SS + +T NPI S+ LI FV AA +L+G F+ + +V+YVGA+ V FLFII Sbjct: 13 VLFSSVISITFSNPIISIIFLITTFVQAACYLILIGINFIGISYIVIYVGAIAVLFLFII 72 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 MM+ I + + + I + + ++ +L+ Sbjct: 73 MMIHIKLTDILDTGNNYTKNLPLGLTIVSLFIFVLFSILPYTYNNISFQLLPN 125 >gi|268627908|gb|ACZ13375.1| NADH dehydrogenase subunit 6 [Isidella sp. I1a] Length = 70 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 31/67 (46%), Positives = 50/67 (74%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAL 63 Query: 67 IVFFLFI 73 + FLF+ Sbjct: 64 AILFLFV 70 >gi|83956301|ref|ZP_00964742.1| hypothetical protein NAS141_01696 [Sulfitobacter sp. NAS-14.1] gi|83839522|gb|EAP78703.1| hypothetical protein NAS141_01696 [Sulfitobacter sp. NAS-14.1] Length = 171 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 64/160 (40%), Gaps = 2/160 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +Q +F F A+ +V + + S +L+F+ +FL++ AEF+ ++ ++ Sbjct: 1 MTVQMIFLAFFGAAAVWFGVVVFRTHSMVRSALALLFSQTAIGAMFLVMQAEFLGVLQIM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 + + V +F++M + + + S + G + + + Sbjct: 61 MMATEMSVMAIFMVMFMMDPGGMGKMDMTHQKRLSLWAGGIGLLAALLLVWLPDWGPVAL 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 + ++G+ L + + +G +L +M+ A Sbjct: 121 SVSGAHEQ--AADLGRELLGRSMLIFQSAGLTILTAMVAA 158 >gi|292655143|ref|YP_003535040.1| NADH dehydrogenase-like complex subunit J1 [Haloferax volcanii DS2] gi|291372449|gb|ADE04676.1| NADH dehydrogenase-like complex subunit J1 [Haloferax volcanii DS2] Length = 86 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 52/85 (61%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV +++ F LF+ + + S VV VR+ +S L A ++ A +++L AEF+A + ++ Sbjct: 1 MVYETIAFALFALVTVGCSLGVVLVRDIWHSALLLGGALLSVAVHYVMLQAEFLAAMQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85 VYVG V++ F +M+ I+ EV+ Sbjct: 61 VYVGGVLILITFAVMLTRINPEVSS 85 >gi|189502385|ref|YP_001958102.1| hypothetical protein Aasi_1025 [Candidatus Amoebophilus asiaticus 5a2] gi|189497826|gb|ACE06373.1| hypothetical protein Aasi_1025 [Candidatus Amoebophilus asiaticus 5a2] Length = 173 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 58/139 (41%), Gaps = 1/139 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L + F+ + + S +++ + +++ LI + + L+ L GA FV++I L+++ G Sbjct: 4 NLLYVFFAVLVAVGSLVILFAKQEFFALLMLILIVIFLSTLYFLQGAPFVSIIQLILHAG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN-FMVFSAEGELSR 123 ++V + ++ I+ + IG ++ L+ N S L Sbjct: 64 GILVLLICSLLFFKHAIKAPNNTDNKIIYKRIVIGAISIGLVGYLCNKLSTISYLFNLPA 123 Query: 124 LVFKGNNVENIGKVLYTQY 142 ++ +G + Y Sbjct: 124 SNRPVGTIQQLGYQILGPY 142 >gi|256593092|gb|ACV03501.1| NADH dehydrogenase subunit 6 [Keratoisis sp. D3] Length = 67 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 46/64 (71%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVGAI 63 Query: 67 IVFF 70 + F Sbjct: 64 AILF 67 >gi|255019947|ref|ZP_05292021.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus ATCC 51756] gi|254970606|gb|EET28094.1| NADH-ubiquinone oxidoreductase chain J [Acidithiobacillus caldus ATCC 51756] Length = 166 Score = 57.7 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 6/143 (4%) Query: 28 PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87 P+ + A LFLLLGA FVA + +++Y+GA++V FLF IM+L D E E Sbjct: 25 PMRGAVLFGAVLLLLAVLFLLLGAPFVAALEVILYLGAILVLFLFAIMLLRPDPE-EETG 83 Query: 88 KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLE 147 +R G+ +L L + + LS + IG L+ + + +E Sbjct: 84 ARRFRRGAGPALLLLCALALVLGLLFLPQTGPHLSAHPLG---IAEIGAALFGPWLWLVE 140 Query: 148 ISGFILLLSMIGAIVLMLRHRRD 170 LL ++IGA VL + D Sbjct: 141 ALAV-LLFAVIGA-VLAIHQGGD 161 >gi|313126881|ref|YP_004037151.1| NADH dehydrogenase subunit j [Halogeometricum borinquense DSM 11551] gi|312293246|gb|ADQ67706.1| NADH dehydrogenase subunit J [Halogeometricum borinquense DSM 11551] Length = 86 Score = 57.7 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 50/85 (58%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV +++ F LF+ + + S VV VR+ +S L A ++ A +++L AEF+A + ++ Sbjct: 1 MVYETIAFALFALITVGCSLGVVLVRDIWHSALLLGGALLSVAVHYVMLQAEFLAAMQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85 VYVG V++ F +M+ +E + Sbjct: 61 VYVGGVLILVTFAVMLTRTRLEASS 85 >gi|76801795|ref|YP_326803.1| NADH dehydrogenase subunit J [Natronomonas pharaonis DSM 2160] gi|76557660|emb|CAI49243.1| NADH dehydrogenase-like complex, subunit J1 [Natronomonas pharaonis DSM 2160] Length = 91 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 40/70 (57%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 + +S VV R+ +S L A + A +++L AEF+A+I ++VYVG V++ F +M Sbjct: 19 VGASLGVVLARDVWHSALFLGAALFSVAVHYVMLRAEFLAVIQVLVYVGGVLILITFAVM 78 Query: 76 MLDIDIEVAE 85 ++ D E Sbjct: 79 LVRQDNTGGE 88 >gi|46202537|ref|ZP_00208557.1| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Magnetospirillum magnetotacticum MS-1] Length = 57 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 29/44 (65%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLF 46 +L FY+F+ +A+ S +V++ RNP++SV LI AF NA F Sbjct: 2 FTALIFYMFAAIAVASGVMVISSRNPVHSVLWLILAFFNARACF 45 >gi|110667601|ref|YP_657412.1| NADH dehydrogenase subunit J [Haloquadratum walsbyi DSM 16790] gi|109625348|emb|CAJ51771.1| NADH dehydrogenase, subunit J (ubiquinone) [Haloquadratum walsbyi DSM 16790] Length = 86 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 50/85 (58%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV +++ F LF+ + + S VV +++ +S L A ++ A +++L AEF+A++ ++ Sbjct: 1 MVYETIAFVLFALVTVGCSLGVVLMQDVWHSALLLGGALLSVAVHYVMLQAEFLAVMQIL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85 VYVG V++ F +M+ E + Sbjct: 61 VYVGGVLILVTFAVMLTRTQPEGSN 85 >gi|21672445|ref|NP_660512.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008867|sp|Q8K9X9|NUOJ_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit J; AltName: Full=NADH dehydrogenase I subunit J; AltName: Full=NDH-1 subunit J gi|21623058|gb|AAM67723.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 163 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 FY S +A+IS+ LV+ +N +YS+ LI + ++ +G+F + GA F + +V+Y G Sbjct: 2 EFVFYACSLIAVISTLLVIIQKNAVYSLLYLIISLLSISGIFFIFGAFFAGALEVVIYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A+IV F+F+IMML++ + KK + + ++ + +F + + ++ Sbjct: 62 AIIVLFVFVIMMLNLGKKNDLQEKKYLNPIFWIGPSFLSLILFLLMTYAIFFVKDK--QI 119 Query: 125 VFKGNNVENIGKVLYTQY 142 F +V+ +G L+ Y Sbjct: 120 YFSLIDVKEVGINLFGPY 137 >gi|256593090|gb|ACV03500.1| NADH dehydrogenase subunit 6 [Keratoisis cf. flabellum SCF-2009] Length = 65 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 45/62 (72%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +FS + +S +V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVGA+ Sbjct: 4 LFMIFSLGIVGASLMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFVIVYVGAI 63 Query: 67 IV 68 + Sbjct: 64 AI 65 >gi|116515046|ref|YP_802675.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256900|gb|ABJ90582.1| NADH dehydrogenase I chain J [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 161 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 47/76 (61%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ F+LFSF+A+ S L++ N IYS+ LI + A +F +LG F+ ++ +++Y G Sbjct: 2 AISFWLFSFLAVFFSILIMISINLIYSLIYLILLIFSIASIFCVLGLSFIGVLEVIIYAG 61 Query: 65 AVIVFFLFIIMMLDID 80 A+ V F+ I +++ Sbjct: 62 AITVLFILIAILMRPK 77 >gi|255564026|ref|XP_002523012.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis] gi|223537752|gb|EEF39371.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis] Length = 112 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 11/100 (11%) Query: 91 GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISG 150 + FFI +++ + V N+E +G +L + Sbjct: 7 FWWKMFFILDNETIVLLPTQRNTASLRYTVYAGKVRSWTNLETLGNLL---------VPS 57 Query: 151 FILLLSMIGAIVLMLRHRRD--IKRQDISKQLESNPDNSI 188 ILL++MIGA+VL + +K +D+S++ + +I Sbjct: 58 LILLVAMIGAVVLTMHKTTHRAVKTKDLSRRNAIDFRRTI 97 >gi|84494888|ref|ZP_00994007.1| hypothetical protein JNB_08819 [Janibacter sp. HTCC2649] gi|84384381|gb|EAQ00261.1| hypothetical protein JNB_08819 [Janibacter sp. HTCC2649] Length = 172 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 4/147 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M L F +A+++ L VT R +++ L+ A + AG L+LG E VA++ ++ Sbjct: 1 MTSLDLAFAACGLLAVVAGLLAVTTRQVVHAALWLVVALLGVAGSLLVLGHELVALVLVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VYVGAV+V LF +M+ I + AA + + + + Sbjct: 61 VYVGAVVVLVLFALMLTRAPIGPDLAHDVPVWRRVAAGVAGAATTALLLAALLPLAGGAV 120 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLE 147 R + + + L+ + +P E Sbjct: 121 ERREISN----QAVATELFGTWVWPFE 143 >gi|259019202|ref|YP_003204919.1| NADH dehydrogenase subunit 6 [Millerozyma farinosa] gi|257143763|emb|CAY39289.1| NADH dehydrogenase, subunit 6 [Millerozyma farinosa] Length = 146 Score = 55.0 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 9/149 (6%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 +SS L + + P+ S+ LI FV+ A G + ++ +++YVGA+ + FLFI+ + Sbjct: 7 MSSLLALGMLTPVQSITCLIVTFVSTAMSTYSEGFILMGILYVLIYVGAIAILFLFILSL 66 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 L+I+ K +G + + IL LI ++ + E + + + +G Sbjct: 67 LNIE------YKPQGSMKPIIVTILLVSLIPLDLSYETYGITTEFNTINEELW---VVGV 117 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165 YT+YA L ++G IL++S++GAI + Sbjct: 118 QFYTEYAILLLMTGLILMMSVMGAISITK 146 >gi|310915125|emb|CBM41834.1| NADH dehydrogenase subunit 6 [Millerozyma farinosa] Length = 153 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 2/149 (1%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 +SS L + + P+ S+ LI F + A G + M+ +++YVGA+ + FLF++ + Sbjct: 7 LSSLLAMGMLTPVQSILCLIILFTSTAMCLYSQGFVLMGMLYMLMYVGAMAMLFLFMLSL 66 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 L +D + L + + L + S ++ G + + N + +G Sbjct: 67 LKMDAPSPKGYHHVSPLLLTLMIVTLMPLDLLYSGME--TSYGMMVEVENTYNELVVVGN 124 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165 LYT+YA L ++G +L+LS++GAI + Sbjct: 125 QLYTEYAMLLVMTGLMLMLSVMGAISMTK 153 >gi|169142682|ref|YP_001687109.1| NADH dehydrogenase subunit 6 [Polytomella capuana] gi|157429027|gb|ABV56561.1| NADH dehydrogenase subunit 6 [Polytomella capuana] Length = 144 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 15/158 (9%) Query: 6 LFFYLFSFMAIIS-SFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + FY A+ + S +V +P ++ I +++ + +LG EF+A++ +VYVG Sbjct: 1 MLFYTALISALTALSLGIVLTTSPFMALMYSIVLYLDVQLILTMLGFEFMALVYALVYVG 60 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 A+ V FLF++M++ + + L+ + + + + FSA+ Sbjct: 61 ALAVLFLFVVMLIRVQ--------------AAAFLSLSTNVSMWVAGIIGFSADTTPRSW 106 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 + G ++ N G +LYT YA ++ L +++ G++V Sbjct: 107 MIAGESLLNFGALLYTSYADLTILNSVALTVALFGSLV 144 >gi|48478478|ref|YP_024184.1| NADH dehydrogenase subunit J [Picrophilus torridus DSM 9790] gi|48431126|gb|AAT43991.1| NADH-quinone oxidoreductase chain J [Picrophilus torridus DSM 9790] Length = 84 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 47/81 (58%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F++F+ + +I SF+V++ + I+S L+ + +GLF+ LG FV + L+ Sbjct: 1 MSYYYIVFFIFAILLVILSFMVISSKKLIHSSIYLLIFLIIISGLFISLGLSFVGSVELL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDI 81 VY GA++ +F +M+ + Sbjct: 61 VYAGAIVTLLVFTLMLTGGED 81 >gi|312233378|ref|YP_004021588.1| Nad6p [Candida jiufengensis] gi|268373365|gb|ACZ03937.1| Nad6p [Candida jiufengensis] Length = 163 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 8/157 (5%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 I S +++ +P+ S+ +L+ FV+ A G + M +++YVGA+ + FLFI + Sbjct: 7 ICSTTALSLLSPVQSIVALMALFVSVAISLYSSGYITMGMTYILMYVGAIAILFLFITSL 66 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFSAEGELSRLVFKGNN 130 L+I+ K+ + L +V + G S + + Sbjct: 67 LNIEYSYKGTFNKKMVYVLLMCLMPLDLLYETFDTVENMNFDIVENMNGMYSTSSLQNWD 126 Query: 131 VE--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 +E +G V YT+YA P I IL+LS++GAI + Sbjct: 127 LELSTVGTVFYTEYAMPTMIMSLILVLSVMGAIAMTK 163 >gi|271965156|ref|YP_003339352.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein [Streptosporangium roseum DSM 43021] gi|270508331|gb|ACZ86609.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J)-like protein [Streptosporangium roseum DSM 43021] Length = 247 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 69/169 (40%), Gaps = 4/169 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +QS F++ + +++ V V + + F+L+ + + +FLL+ ++ ++ ++ Sbjct: 1 MTLQSAAFWMLATLSVAGGVAVFVVDSMARATFALLTSLICVGLVFLLIDLSYLGVLIVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 + V +++ +F+IM + + + G+ I L+V VF Sbjct: 61 MMVMEMLIMAVFMIMFMMNPAGLMPMKMVHNARGAPLIAAGVFVLLVAG----VFLTPWP 116 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 R + +G + + + G +L +MI VL R Sbjct: 117 RRRGSPPADPTHALGLSIMGPKMLVMMVVGVAILATMISTTVLATHRGR 165 >gi|322369191|ref|ZP_08043756.1| NADH dehydrogenase subunit J [Haladaptatus paucihalophilus DX253] gi|320550923|gb|EFW92572.1| NADH dehydrogenase subunit J [Haladaptatus paucihalophilus DX253] Length = 88 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 45/77 (58%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F LF+ + + SS V VR+ +S L + ++ A +++L AEFVA + ++ Sbjct: 1 MAYEMIAFALFAILTVASSVGAVLVRDVWHSALLLGASLLSFAAHYVMLQAEFVAAMQIL 60 Query: 61 VYVGAVIVFFLFIIMML 77 VYVG V++ F +M+ Sbjct: 61 VYVGGVLILITFAVMLT 77 >gi|319790461|ref|YP_004152094.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio ammonificans HB-1] gi|317114963|gb|ADU97453.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Thermovibrio ammonificans HB-1] Length = 160 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 65/154 (42%), Gaps = 12/154 (7%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +++F++ + + S+ + + + +++ S + A ++ L + + L VY G Sbjct: 4 NVYFWIVYAVIVFSAIIALEASSLLWAAVSFVVLLSEIALVYFGLNMPVLGGVQLAVYAG 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 V + LF IMM+ + + + + S + +VFS + Sbjct: 64 GVTILVLFAIMMIGESYKKPPGKAVKAIVLSL----------ILLIIGIVFSFWSAIDTF 113 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMI 158 FK + E +G V +Y++ + GFI ++ I Sbjct: 114 PFKVYSTEALGTVFVEKYSFFTIVLGFI--VAAI 145 >gi|262211481|gb|ACY35570.1| NADH dehydrogenase subunit 6 [Polytomella sp. SAG 63-10] Length = 145 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 13/157 (8%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L Y+ ++ + VV +P ++ I ++N + LG +F+A+I +VYVGA Sbjct: 2 LLIYIMLSNIVVLALSVVLTSSPFMALMYSILLYLNVQTILWSLGYDFMALIYALVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + V FLF++MM+ I + + + L I + FS + Sbjct: 62 LAVLFLFVVMMVRIQVSTLSTKTVQAVLSWLAIMLF-------------FSYDNANYSFP 108 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIV 162 ++ N G LY+ + ++ L +++ G++V Sbjct: 109 CAAESLLNFGTCLYSSCSDLTLLNSLALTIALFGSLV 145 >gi|256593063|gb|ACV03486.1| NADH dehydrogenase subunit 6 [Isidella sp. I2a] gi|256593066|gb|ACV03488.1| NADH dehydrogenase subunit 6 [Isidella tentaculum] Length = 61 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 43/58 (74%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 F +FS + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ +I ++VYVG Sbjct: 4 LFMIFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGLIFIIVYVG 61 >gi|167951306|ref|ZP_02538380.1| NADH dehydrogenase I chain J [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 44 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 25/43 (58%) Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 +++I AI L +R R + K D S+Q+ + + MV++ + K Sbjct: 1 MAIIAAIRLTMRKRPENKSIDPSQQVVVKRADRVRMVQMDAEK 43 >gi|21689547|gb|AAL65277.1| NADH dehydrogenase subunit 6 [Polytomella parva] Length = 145 Score = 52.3 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 49/97 (50%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L Y+ ++ + VV +P ++ I ++N + LG +F+A+I +VYVGA Sbjct: 2 LLIYIMLSNIVVLALSVVLTSSPFMALMYSILLYLNVQTILWSLGYDFMALIYALVYVGA 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102 + V FLF++MM+ I + + + L I ++ Sbjct: 62 LAVLFLFVVMMVRIQVSTLSTKTIQSVLSWLAIILIF 98 >gi|298674252|ref|YP_003726002.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Methanohalobium evestigatum Z-7303] gi|298287240|gb|ADI73206.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Methanohalobium evestigatum Z-7303] Length = 86 Score = 52.3 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 104 ELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 +I + + EL + +N+E IG ++T+Y P EI +LL ++IGA Sbjct: 20 GMIGVSVIGTGWDTVEELPQTPEDQSNIERIGVSVFTKYVVPFEIMAIVLLSALIGA 76 >gi|189095565|ref|YP_001936271.1| NADH dehydrogenase subunit 6 [Aphrocallistes vastus] gi|150024083|gb|ABR58844.1| NADH dehydrogenase subunit 6 [Aphrocallistes vastus] Length = 188 Score = 52.3 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 2/166 (1%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 LV + R I V LI F+N + L +LL EF+A+ ++VYVGA+ + F+FIIM+L++ Sbjct: 14 LLVTSSRRTINRVIWLILRFINTSLLLILLKLEFIAIFIIIVYVGAIAILFIFIIMILNL 73 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELI--VCASNFMVFSAEGELSRLVFKGNNVENIGKV 137 + + + I I I + + + E ++ + N+E I + Sbjct: 74 RNQKHKKSRNHLIPIRLIIRITLILHITEIIKKRKINNNQERISNKQIINLRNLEIIRNL 133 Query: 138 LYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 +Y+ Y L I ILLL M+ AI++ + +Q + Q++ Sbjct: 134 IYSNYCEWLIIRRAILLLRMLTAILISEKENTQNIKQQLFTQIQRT 179 >gi|170289769|ref|YP_001736585.1| NADH dehydrogenase subunit J [Candidatus Korarchaeum cryptofilum OPF8] gi|170173849|gb|ACB06902.1| NADH dehydrogenase subunit J [Candidatus Korarchaeum cryptofilum OPF8] Length = 160 Score = 52.3 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 1/104 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F L S +A++SS L+V R+ +YS F L + + LF LLG +A+ LVVYVGA Sbjct: 10 IIFLLSSALALVSSALIVFHRSIVYSAFFLSMLGIANSILFTLLGFPIIALFHLVVYVGA 69 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + F LF ++M+ + EP + + S + IL I A Sbjct: 70 AVTFILFSLVMM-REAPTVEPGIRALAVASIVLMILVLSSIFMA 112 >gi|329940453|ref|ZP_08289734.1| putative NADH dehydrogenase chain J [Streptomyces griseoaurantiacus M045] gi|329300514|gb|EGG44411.1| putative NADH dehydrogenase chain J [Streptomyces griseoaurantiacus M045] Length = 189 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 5/172 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 A+ LV T+ + F+L+ + V G+ +LG ++ ++ +++ V +++ +F+I Sbjct: 16 ALAGGVLVFTLNSMARVTFALLGSLVCVGGVVTVLGLPYLGVVIVLMMVMEMVIMAVFMI 75 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 + + G+ + L +V +F+ V + I Sbjct: 76 AYMMNPAGLMPMSMLHNKRGALAVSSLVFAALVAG----IFAVPWPRRAGVRPDDTTLQI 131 Query: 135 GKVLYTQYAYPLEISGFILLLSMIGAIVL-MLRHRRDIKRQDISKQLESNPD 185 G L + G +LL +M+GA VL R R D D+ ++ +P Sbjct: 132 GMSLMGGQMLTMVTLGIVLLATMVGATVLATHRGRYDRFGDDLDQRPAQDPA 183 >gi|11466053|ref|NP_038212.1| NADH dehydrogenase subunit 6 [Pichia canadensis] gi|22654266|sp|P48927|NU6M_PICCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|11036341|dbj|BAA06567.2| NADH dehydrogenase subunit 6 [Pichia canadensis] Length = 207 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 34/52 (65%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 NP+YS+ LI F+N A L+G ++++ ++VY+GA+ V FLFI+ + Sbjct: 36 NPMYSILYLIILFINIAIYLYLIGISIMSLLYILVYIGAIAVLFLFILSLFT 87 >gi|309322022|ref|YP_003935010.1| NADH dehydrogenase subunit 6 [Candida alai] gi|308746499|gb|ADO51034.1| NADH dehydrogenase subunit 6 [Candida alai] Length = 148 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S ++ I+S L + + +PI S+ LI F + A + G + ++ +++YVGA+ + FL Sbjct: 2 SIISGIASLLAIGILSPIQSILCLIIIFTSTAIYLYINGFILMGILYILIYVGAIAILFL 61 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 FI+ +L+I+ + G+ + + +I+ + E N + Sbjct: 62 FIVSLLNIE-------YTKLIEGNVPLILSILIIILIPLDLTSNINIIENIDYNNIYNEL 114 Query: 132 ENIGKVLYTQYAY 144 +G +LYT YA+ Sbjct: 115 NTVGSLLYTDYAF 127 >gi|269986912|gb|EEZ93188.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 158 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 48/106 (45%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + S+ F + S + I ++ L+V+ +N I+S+ + ++ + L L A F+ + L+ Sbjct: 1 MDLGSIGFLVISALLISTAILMVSTKNLIHSLLYMFMFVISVTAMILYLNAVFLGIAELI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 +Y G +++ I + K L + + + L+ Sbjct: 61 IYNGGIVLLLAIGISSMPEGTVTRLNSKLSFALPVIVLAVTSFLLL 106 >gi|256427272|ref|YP_003127037.1| Nad6p [Brettanomyces custersianus] gi|255761583|gb|ACU32820.1| Nad6p [Brettanomyces custersianus] Length = 168 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 1/139 (0%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 LI + ++ A++ ++YVGAV++ F+FI+ +L+ E + Sbjct: 30 LIGTIIPVITELWFNSSQLFAILYTLIYVGAVVILFVFILSVLNKKEEYEYQYSSLLLIL 89 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRL-VFKGNNVENIGKVLYTQYAYPLEISGFIL 153 N + + L + +++ IG +L+T+Y++ L I L Sbjct: 90 IILFLDDLDYNDSGDYNLNNVNIFDNFNLLNITNNSDLATIGNLLFTEYSFLLVIIAVTL 149 Query: 154 LLSMIGAIVLMLRHRRDIK 172 LLS+IG IV++ R++ K Sbjct: 150 LLSIIGIIVIVKRNKSLAK 168 >gi|28972922|gb|AAM95261.1| NADH dehydrogenase subunit 6 [Plexaurella grisea] Length = 120 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + ++ Sbjct: 1 LFLFVIMLIQQPNKVETQDHSHFLP-------VGLSVIFLFYSLLTNSPTYVSNPVIGSR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDISK 178 N+ IG LYT Y + ++ +LL++MIGAI+L + +QD+ + Sbjct: 54 TNIGAIGSHLYTTYYELVLVASLVLLVAMIGAILLAKQPNSPSLYNSYGDSLRSKQDLFQ 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|227828037|ref|YP_002829817.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus M.14.25] gi|227830774|ref|YP_002832554.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus L.S.2.15] gi|229579670|ref|YP_002838069.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus Y.G.57.14] gi|229581664|ref|YP_002840063.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus Y.N.15.51] gi|229585306|ref|YP_002843808.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus M.16.27] gi|238620267|ref|YP_002915093.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus M.16.4] gi|284998288|ref|YP_003420056.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sulfolobus islandicus L.D.8.5] gi|227457222|gb|ACP35909.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus L.S.2.15] gi|227459833|gb|ACP38519.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus M.14.25] gi|228010385|gb|ACP46147.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus Y.G.57.14] gi|228012380|gb|ACP48141.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus Y.N.15.51] gi|228020356|gb|ACP55763.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus M.16.27] gi|238381337|gb|ACR42425.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus M.16.4] gi|284446184|gb|ADB87686.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Sulfolobus islandicus L.D.8.5] gi|323475128|gb|ADX85734.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus REY15A] gi|323477860|gb|ADX83098.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus islandicus HVE10/4] Length = 167 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 14/169 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAE----FVAMI 57 ++Q F F MAI S +V +N Y SL F ++ A L + L A ++ Sbjct: 8 IIQYTLFAFFGTMAIAFSIYIVRAKNVFYGAVSLAFLGLSIAAL-IALEAPSTYGIYSVF 66 Query: 58 TLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +++YVGA + F ++M + E R +RG L GILA + +F + Sbjct: 67 HILLYVGATVTFLAISLVMF----KDLEVRIRRGSL-----GILAGGAVTLLFLITIFIS 117 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 ++S + N + + L Y +PL I LL ++I AI L R Sbjct: 118 NFKVSPSTLQPINFQILANDLLENYWFPLIILIVALLTTLIEAIALARR 166 >gi|28972926|gb|AAM95263.1| NADH dehydrogenase subunit 6 [Plexaurella nutans] Length = 120 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 FLF+IM++ +V + +I + + S + ++ Sbjct: 1 LFLFVIMLIQQPNKVETQDHSHFLP-------VGLSVIFLFYSLLTNSPTYVSNPVIGSR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDISK 178 N+ IG LYT Y + ++ +LL++MIGAI+L + +QD+ + Sbjct: 54 TNIGAIGSHLYTTYYELVLVASLVLLVAMIGAILLAKQPNSPSLYNSYGDSLRXKQDLFQ 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|134153039|gb|ABO64354.1| unknown [Brassica juncea var. tumida] Length = 256 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLF-----------LLLGAEFV 54 + + S A++S +V +NP++SV I F + +F + F+ Sbjct: 1 MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDIETVFTYFSSFPIIRKFSMKWRFL 60 Query: 55 AMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 ++V F+F + L D + + F G Sbjct: 61 WFSIFKFIFAIIMVKFVFSVGYLCFDDLTRAISQFYPPISGFLGG 105 >gi|13449337|ref|NP_085519.1| hypothetical protein ArthMp052 [Arabidopsis thaliana] gi|15226112|ref|NP_178798.1| cytochrome b, putative [Arabidopsis thaliana] gi|44888127|sp|P93314|M590_ARATH RecName: Full=Uncharacterized mitochondrial cytochrome b-like protein AtMg00590; AltName: Full=ORF313 gi|1785720|emb|CAA69743.1| unnamed protein product [Arabidopsis thaliana] gi|20198287|gb|AAM15503.1| hypothetical protein [Arabidopsis thaliana] gi|110740159|dbj|BAF01978.1| hypothetical protein [Arabidopsis thaliana] gi|330251007|gb|AEC06101.1| Cytochrome b/b6 protein [Arabidopsis thaliana] Length = 313 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++ + S A++S +V +N ++SV I F + LF + + ++ ++ Sbjct: 44 TMILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQLF-----HYFCRLPIIKHLA 98 Query: 65 AVIVFFLFIIM 75 LF+I Sbjct: 99 TKCQLLLFLIS 109 >gi|325295369|ref|YP_004281883.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065817|gb|ADY73824.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 158 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 66/148 (44%), Gaps = 10/148 (6%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S++F++ + IIS+ + + + +++ + + A ++ + + + L +Y G Sbjct: 2 SIYFWIIYAVIIISAIVALEATSLLWAAIAFVVLLSEIALVYFGIEMPVLGGVQLAIYAG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 V + LF IMM+ + + + + +L+ +++ + FSA S Sbjct: 62 GVTILVLFAIMMIGESYKKPQSK-------AVGAKVLSLIILILGTAVSFFSAIDTFSYR 114 Query: 125 VFKGNNVENIGKVLYTQYAYPLEISGFI 152 ++ + +G V +Y++ I GFI Sbjct: 115 IYP---TQVLGTVFVEKYSFFTIILGFI 139 >gi|290559124|gb|EFD92489.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 158 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 51/106 (48%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + S+ F + S M I ++ L+V+ +N I+S+ + ++ + L L A F+ + L+ Sbjct: 1 MDIGSIGFIIISLMLIATALLMVSTKNMIHSLLYMFMFVISVTAMILYLNAVFLGIAELI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 +Y G +++ I + RK L F+G+ + L+ Sbjct: 61 IYNGGIVLLLAIGISSMPEGKVNLLNRKIAYVLPVIFLGVTSFLLL 106 >gi|156937934|ref|YP_001435730.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ignicoccus hospitalis KIN4/I] gi|156566918|gb|ABU82323.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Ignicoccus hospitalis KIN4/I] Length = 160 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 10/153 (6%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F L +A + V+ + + + SL+ F+ L LGA FV + +++ GAV Sbjct: 3 AFVLLMGLATAFAAAVLWDPDIVRAASSLVMVFLLTGFALLSLGAWFVGAMQVLLGAGAV 62 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 + L+ + EV R + I LA ++ + F+ + G + F Sbjct: 63 AILALYAAITSKKRKEVLRSRS------AGTIAALALSVLGISMGFLTLNTPGTFT---F 113 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 ++ I +VL+ + +L++++I Sbjct: 114 YSSDASKIAEVLFEDVGLTV-ALSVLLIVALIA 145 >gi|13541941|ref|NP_111629.1| NADH dehydrogenase subunit J [Thermoplasma volcanium GSS1] gi|14325372|dbj|BAB60276.1| NADH dehydrogenase I chain G [Thermoplasma volcanium GSS1] Length = 82 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 38/77 (49%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L F + + I S L V +N +S L A FL LGA FVA + ++VY+G Sbjct: 4 TLIFSIIAVFLIAFSVLSVKEKNITHSAIYLFLFLFILAAEFLFLGASFVAAVEILVYIG 63 Query: 65 AVIVFFLFIIMMLDIDI 81 AV+ +F +M+ Sbjct: 64 AVVTLIVFTVMLTGGKE 80 >gi|15897267|ref|NP_341872.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus P2] gi|284174516|ref|ZP_06388485.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus 98/2] gi|13813472|gb|AAK40662.1| NADH dehydrogenase subunit J (NuoJ) [Sulfolobus solfataricus P2] gi|261601936|gb|ACX91539.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Sulfolobus solfataricus 98/2] Length = 167 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 14/169 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAE----FVAMI 57 ++Q + F F M I S +V +N Y SL F ++ A L + L A ++ Sbjct: 8 IIQYILFGFFGVMTIAFSIYIVRAKNVFYGAVSLAFLGLSIAAL-IALEAPSTYGIYSVF 66 Query: 58 TLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +++YVGA V FL I +++ D+EV G +GILA + +VF + Sbjct: 67 HILLYVGA-TVTFLAISLVMFKDLEVK--------FGRGALGILAGGAVTLLFLIIVFIS 117 Query: 118 EGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 ++S + N + + L Y +PL I LL ++I AI L R Sbjct: 118 IPQVSSAEVQPINFQVLANDLIENYWFPLIILVIALLTTLIEAISLARR 166 >gi|62736216|ref|YP_227575.1| NADH dehydrogenase subunit 6 [Candida orthopsilosis] gi|62177728|gb|AAX73020.1| NADH dehydrogenase subunit 6 [Candida orthopsilosis] gi|170785415|gb|ACB37772.1| NADH dehydrogenase subunit 6 [Candida orthopsilosis] Length = 155 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 72/149 (48%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 ISS L + + +P+ S+ LI FV+AA G + ++ +++YVGA+ + FLFI+ + Sbjct: 7 ISSILAIGLLSPVQSIVCLIVLFVSAAISLYSNGFVLMGILYVLIYVGAIAILFLFILSL 66 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 L+I+ F I + + L+ + +G Sbjct: 67 LNIEYNYKGTIHPLIFTILLICLIPLDLSYDTYGIVENVNIAYPFNGLLDWDLELSTVGT 126 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165 +LYT+YA P+ + G IL+LS+IGAI + Sbjct: 127 LLYTEYAIPMILIGLILILSVIGAIAITK 155 >gi|38640868|ref|NP_943643.1| NADH dehydrogenase subunit 6 [Candida parapsilosis] gi|1352588|sp|P48923|NU6M_CANPA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|38564100|emb|CAE54605.1| NADH dehydrogenase subunit 6 [Candida parapsilosis] gi|183229570|gb|ACC60284.1| Nad6p [Candida parapsilosis] Length = 155 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 72/149 (48%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 ISS L + + +P+ S+ LI FV+AA G + ++ +++YVGA+ + FLFI+ + Sbjct: 7 ISSILAIGLLSPVQSIVCLIVLFVSAAISLYSNGFVLMGILYVLIYVGAIAILFLFILSL 66 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 L+I+ F I + + L+ + +G Sbjct: 67 LNIEYNYKGTIHPLIFTILIICLIPLDLSYETYGIVENVNIAYPFNSLLDWDLELTTVGS 126 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165 +LYT+YA P+ + G IL+LS+IGAI + Sbjct: 127 LLYTEYAIPMILIGLILILSVIGAIAITK 155 >gi|146304648|ref|YP_001191964.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Metallosphaera sedula DSM 5348] gi|145702898|gb|ABP96040.1| NADH dehydrogenase subunit J [Metallosphaera sedula DSM 5348] Length = 166 Score = 48.1 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 12/168 (7%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAE---FVAMIT 58 Q F+LFS A+ ++ +V +N YS SL F ++ A L L E + Sbjct: 7 DFQIGIFFLFSIFALATALFIVNSKNVFYSAVSLAFLGISVAVLIADLDPEAYSLYSAFH 66 Query: 59 LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 L++YVGA V FL I +++ +EV E R + + ++V +++ Sbjct: 67 LLLYVGA-TVVFLSISLVMFRGLEVKEIRTPWAPAMALLSAVAFFAVLVLSTS------- 118 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 ++ + + N+ +G+ + +QY +P + LL +MI A+ L R Sbjct: 119 -SITPVQIQPLNLAVVGEKIVSQYWFPAVVLVIALLTTMIEALSLARR 165 >gi|48478479|ref|YP_024185.1| NADH dehydrogenase subunit J [Picrophilus torridus DSM 9790] gi|48431127|gb|AAT43992.1| NADH-quinone oxidoreductase chain J [Picrophilus torridus DSM 9790] Length = 73 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%) Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + N+ IG L++ Y P E+ IL+ ++IG + + RR Sbjct: 28 FIIRSQNISRIGTELFSTYIIPFELLSLILVAAIIGVMYIAWEERR 73 >gi|1171833|sp|P43193|NU6M_ALCTO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394660|emb|CAA52121.1| NADH dehydrogenase subunit 6 [Alca torda] gi|21104302|emb|CAC80344.1| NADH dehydrogenase subunit 6 [Alca torda] Length = 173 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G+ F+G+L +++ Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVIGYGAGFVGVLMVGMVI 104 >gi|284990230|ref|YP_003408784.1| putative NADH dehydrogenase chain J [Geodermatophilus obscurus DSM 43160] gi|284063475|gb|ADB74413.1| putative NADH dehydrogenase chain J [Geodermatophilus obscurus DSM 43160] Length = 193 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 63/159 (39%), Gaps = 4/159 (2%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 +++++ V V + + F+L+ +F+ G+ + ++A +T ++ + V Sbjct: 16 LGGLSVVAGIAVFVVDSMARATFALLASFLAVTGVLVAFDLPYLAFVTALMMTIEMAVMA 75 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 +F+IM + + GS +G ++ V++ + R ++ Sbjct: 76 VFMIMFMMNPAGLMPMTMVHNARGSAVLGAGVFAVLTVG----VWTIDWPTRRGELPADS 131 Query: 131 VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +G+ + + + + G L +++ VL R Sbjct: 132 TMQLGEAIMGSHMLVMLVIGVGLFATIVSGTVLATARGR 170 >gi|57854707|ref|YP_187573.1| NADH dehydrogenase subunit 6 [Luidia quinalia] gi|57506691|dbj|BAD86681.1| NADH dehydrogenase subunit 6 [Luidia quinalia] Length = 163 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 9/160 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+ + I LV +P Y L+ ++ + LLG F+A+I +++Y+G Sbjct: 1 MIFYVAFIVMFIGGTLVFYSLSPYYGALGLVLVALSGCIISGLLGISFMALILVLIYMGG 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F++ + + K L +G+L + + +F+ + EG S Sbjct: 61 MLVVFVYSTAISAERYPIVSGTLKE-VLSLLAVGVLW--VFIGFDSFLTLNVEGWESFC- 116 Query: 126 FKGNNVENIGK-VLYTQYAYPLEISGFILLLSMIGAIVLM 164 N+ +G L+ + L +G+ILL+++I A+V+ Sbjct: 117 ----NIGLVGSGSLFGAESLYLFGAGYILLVALIVALVIT 152 >gi|57854653|ref|YP_187599.1| NADH dehydrogenase subunit 6 [Astropecten polyacanthus] gi|57506719|dbj|BAD86707.1| NADH dehydrogenase subunit 6 [Astropecten polyacanthus] Length = 163 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 7/159 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY + LV +P Y L+ ++ L+G F+A+I +++Y+G Sbjct: 1 MIFYSLFVIMFFGGTLVFYSLSPYYGALGLVVVALSGCIFVSLVGVPFMALILILIYMGG 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F++ + K + S I N + S + + Sbjct: 61 MLVVFVYSTAISAERYPTVSIDFKEIVILSLLIISWVLINFDLFVNGEISSWLSVANPGL 120 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 LY + + L G+ILL+++I A+++ Sbjct: 121 LGSG-------ELYNEMGWYLIGGGYILLVALIVALIIT 152 >gi|15922549|ref|NP_378218.1| NADH-plastoquinone oxidoreductase subunit 6 [Sulfolobus tokodaii str. 7] gi|15623339|dbj|BAB67327.1| 165aa long hypothetical NADH-plastoquinone oxidoreductase subunit 6 [Sulfolobus tokodaii str. 7] Length = 165 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 10/167 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG--AEFVAMITL 59 Q FF F ++I S+ + +N Y+ LIF ++ A + L+ F + + Sbjct: 6 DFQVSFFVFFGIISIASALFITRQKNVFYAAIGLIFLGISVAAMIALINFAYSFYSAFHI 65 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 ++YVG+ +VF ++M K + I L + V F FS+ Sbjct: 66 LLYVGSTVVFLAISLVMFRG------LNVKEVKISWAPIIALLVGVFVFIDIFATFSSIT 119 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 +S L + +++ + + Y +P I LL +MI AI L R Sbjct: 120 PVSTL--EVFSLQTLANEILQNYWFPALILIIALLTTMIEAISLARR 164 >gi|257077084|ref|ZP_05571445.1| hypothetical protein Faci_08471 [Ferroplasma acidarmanus fer1] Length = 83 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 46/79 (58%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + ++ F++ + +A+I + ++ +N I+S L+ + + +F+ LG FV I L+VY Sbjct: 2 IDTIIFFILAAIAVIMALSAISTKNLIHSSIFLLILLLMFSIIFIFLGLSFVGSIELLVY 61 Query: 63 VGAVIVFFLFIIMMLDIDI 81 GAV++ +F++M+ Sbjct: 62 AGAVVMLIVFVLMLTGGKD 80 >gi|224373438|ref|YP_002607810.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nautilia profundicola AmH] gi|223589204|gb|ACM92940.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily [Nautilia profundicola AmH] Length = 155 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 36/75 (48%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +A+I + + +T +N + +V + + ++L+ + + + + VY G ++V LF Sbjct: 7 ALAVILAVMSLTQKNTVPAVLAFVMMMFLLGIYYILMDEKLLGLFQIFVYTGGIVVLTLF 66 Query: 73 IIMMLDIDIEVAEPR 87 + ++ E R Sbjct: 67 GVTVIGAKFPKFEIR 81 >gi|49146207|ref|YP_025987.1| NADH dehydrogenase subunit 6 [Anseranas semipalmata] gi|37960693|gb|AAP47792.1| NADH dehydrogenase subunit 6 [Anseranas semipalmata] Length = 173 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 48/103 (46%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + S ++ + V + +P Y V L+ A V G L LGA FV++ +VY+G Sbjct: 2 TYFVFFLSVCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLLSLGASFVSLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A G+ + ++ A ++ Sbjct: 62 GMLVVFVYSVSLAAEPFPEAWGDWGVMGYGAGLVSVVFAGVVF 104 >gi|62736232|ref|YP_227560.1| NADH dehydrogenase subunit 6 [Candida metapsilosis] gi|62177744|gb|AAX73035.1| NADH dehydrogenase subunit 6 [Candida metapsilosis] gi|170779377|gb|ACB37041.1| NADH dehydrogenase subunit 6 [Candida metapsilosis] Length = 155 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 71/149 (47%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 ISS L + + +P+ S+ LI FV+AA G + ++ +++YVGA+ + FLFI+ + Sbjct: 7 ISSILAIGLLSPVQSIVCLIVLFVSAAISLYSNGFVLMGILYVLIYVGAIAILFLFILSL 66 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 L+I+ I + + L+ + +G Sbjct: 67 LNIEYNYKGTIHPLILTILLICLIPLDLSYETYGIVENVNIAYPFNGLLDWDLELTTVGS 126 Query: 137 VLYTQYAYPLEISGFILLLSMIGAIVLML 165 +LYT+YA P+ + G IL+LS+IGAI + Sbjct: 127 LLYTEYAIPMILIGLILILSVIGAIAITK 155 >gi|11643245|gb|AAG39483.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] Length = 172 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 5/123 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F S ++ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MKFVLF--LSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G F +G++ V + F V G + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTV 117 Query: 122 SRL 124 + + Sbjct: 118 NNV 120 >gi|149195036|ref|ZP_01872128.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Caminibacter mediatlanticus TB-2] gi|149134749|gb|EDM23233.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Caminibacter mediatlanticus TB-2] Length = 155 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +AII + + +T +N + +V + + ++ LG + + + + VY G ++V LF Sbjct: 7 VIAIILAVMSLTQKNTVGAVIAFVMMMFLLGIYYIFLGEKLLGLFQIFVYTGGIVVLTLF 66 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 + ++ K R + S IL +I+ Sbjct: 67 GVTVIGAKFP---EFKIRPWAISIVTVILIGLMII 98 >gi|109689691|ref|YP_659575.1| NADH dehydrogenase subunit 6 [Ventrifossa garmani] gi|109452375|dbj|BAE96408.1| NADH dehydrogenase subunit 6 [Ventrifossa garmani] Length = 173 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 3/114 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S + I+ + + + +P+Y+ L+ A+ L + G F++++ +VY+G V+V Sbjct: 7 MLSGVFILGAVALASSPSPVYAALGLVLMAGGASMLLIDSGGPFLSLLFYLVYLGGVLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 F + + + A L +GI + N++ +S+ L+ Sbjct: 67 FAHCVALAADNYPKAWGDV---ILLMVLVGITVSWTAAAVFNWLDWSSLALLNT 117 >gi|57854578|ref|YP_187586.1| NADH dehydrogenase subunit 6 [Asterias amurensis] gi|57506705|dbj|BAD86694.1| NADH dehydrogenase subunit 6 [Asterias amurensis] Length = 162 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 10/160 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY + ++ S LV +P Y L+ ++ L L+G F+A++ L++Y+G Sbjct: 1 MIFYFTFILMLLGSTLVFYSLSPYYGALGLVIVAMSGCILCGLVGLSFMALVLLLIYIGG 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F++ + V K+ + ++ + NF + ELS + Sbjct: 61 MLVVFVYSSALSAERYPVVSNIKE-------VTILFLILVLWISLNFDLVLNLSELSWM- 112 Query: 126 FKGNNVENIGK-VLYTQYAYPLEISGFILLLSMIGAIVLM 164 +N++ IG LY + L + G+IL +++I A+V+ Sbjct: 113 -SHSNLDLIGSGNLYNNVWWYLGVGGYILFIALIVALVIT 151 >gi|70608046|ref|YP_256916.1| hypothetical protein Saci_2341 [Sulfolobus acidocaldarius DSM 639] gi|68568694|gb|AAY81623.1| conserved protein [Sulfolobus acidocaldarius DSM 639] Length = 168 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 10/170 (5%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG---AEFVAMIT 58 Q F LFS AI SS L+V +N YS +L V+ A + LL F + + Sbjct: 6 DFQLAFLLLFSVFAIASSLLIVRQKNVFYSAVALGLLGVSVAVIIALLNPIAYSFYSALH 65 Query: 59 LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 L++YVG+ + FL + +++ +EV E R + F +V F++ E Sbjct: 66 LILYVGS-AIVFLSVSLVVFRGLEVKERRVAWASILGFITA------LVVFFAFILTFVE 118 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 + L + + L + Y +P+ I L ++I A+ L + Sbjct: 119 NTPTPLQAQVFTLSTFANTLLSDYWFPILILVIALATTLIEALSLARGGK 168 >gi|118431450|ref|NP_147931.2| NuoJ-like protein [Aeropyrum pernix K1] gi|116062774|dbj|BAA80415.2| NuoJ homolog [Aeropyrum pernix K1] Length = 160 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 14/162 (8%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 +++ + +A + S VV R+ +YS +L ++ A + LLG VA+ ++V Sbjct: 4 SLEAAVLIGVAGLATLFSMFVVRHRDMVYSSAALALVGLSTAAVVGLLGFPLVAVFLVIV 63 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 YVGA ++F + + ML + G+ AA + F Sbjct: 64 YVGAAVMFIIVSVSMLGGGGREEWDEWR---------GLAAAAAAFSTVTLLGFIGGLWQ 114 Query: 122 SRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 + N+E I VL T+ YP+ I+L + + A +L Sbjct: 115 LYTPPQPVNLETIALVL-TRDLYPV----VIVLAAGLAATIL 151 >gi|226453420|ref|YP_002791079.1| NADH dehydrogenase subunit 6 [Tarentola mauritanica] gi|167030956|gb|ABZ05717.1| NADH dehydrogenase subunit 6 [Tarentola mauritanica] Length = 178 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 2/103 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ +FF ++ V + +P Y V L+F + + LG F+ ++ + Sbjct: 1 MLYFVIFFSFLCL--LLGGVGVASNPSPFYGVVGLVFGALAGCVALVSLGGSFIGLVLFI 58 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103 VY+G ++V F + + + ++ + + +L Sbjct: 59 VYLGGMMVVFAYSVALAAEPYPEDSGGTILWWVLCYVVLVLFL 101 >gi|256593070|gb|ACV03490.1| NADH dehydrogenase subunit 6 [Keratoisidinae sp. SCF-2009] Length = 53 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 36/50 (72%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAM 56 F +FS + +SF+V++ NP+YSVF L+ AFVNAA +F+ LG +++ + Sbjct: 4 LFMIFSLGIVGASFMVISTPNPVYSVFWLVIAFVNAAVMFISLGLDYIGL 53 >gi|16082007|ref|NP_394424.1| NADH dehydrogenase subunit J [Thermoplasma acidophilum DSM 1728] gi|10640279|emb|CAC12093.1| NADH dehydrogenase, chain J related protein [Thermoplasma acidophilum] Length = 82 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 39/77 (50%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L F L + I S + V +N +SV L + A FL +GA F+A + ++VY+G Sbjct: 4 TLIFSLIAIFLIAFSVMSVREKNLTHSVIYLFLFLIILASEFLFIGASFIAAVEVLVYIG 63 Query: 65 AVIVFFLFIIMMLDIDI 81 AV+ F +M+ Sbjct: 64 AVVTILAFTVMLTGGKE 80 >gi|312183563|gb|ADQ42351.1| NADH:ubiquinone oxidoreductase J [Methanosaeta harundinacea] Length = 88 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN------VENIGKVLYTQYAYPLEI 148 S + I A LIV + E + N + +IG ++T Y E+ Sbjct: 7 SILMLIFLATLIVLLAATPWGGEEMGSYSFEPREGNRAPESGIGDIGVEIFTLYIVAFEV 66 Query: 149 SGFILLLSMIGAIVLMLRH 167 G +LL +MIGAI + + Sbjct: 67 LGLVLLAAMIGAIYVARKE 85 >gi|116662189|ref|YP_829244.1| hypothetical protein Arth_4494 [Arthrobacter sp. FB24] gi|116612941|gb|ABK05663.1| NADH dehydrogenase subunit J [Arthrobacter sp. FB24] Length = 204 Score = 45.0 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 68/167 (40%), Gaps = 4/167 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + ++ F + +A+ + V + + ++L +FV + L G +++ ++T+++ Sbjct: 2 LTTVIFAALALIAVAAGIAVFRTDSMARATYALAVSFVAVGAMMLQFGLDYIGVVTILMM 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 V + + +F++M + ++ + GS I ++ + + + A Sbjct: 62 VMEMAIMAIFMVMFMGMNPALMPMDMVHNKRGSLLISSGVFAVLAAGALLVPWPARRGAP 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 + + +G+ + + +L +++ A+VL R Sbjct: 122 AVDLTAS----LGEAIMGNKMLVMLTVSPVLFATLVSAVVLANPRGR 164 >gi|195975757|ref|YP_002122384.1| NADH dehydrogenase subunit 6 [Candida neerlandica] gi|162423297|gb|ABX89436.1| NADH dehydrogenase subunit 6 [Candida neerlandica] Length = 146 Score = 45.0 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 9/133 (6%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S ++ I+S L + + +P+ S+ +LI F++ A G + ++ ++VYVGA+ + FL Sbjct: 2 SIISGIASILAIGLLSPVQSILALICLFISIAISLYSSGYVLMGILYILVYVGAIAILFL 61 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 FI+ +L+I+ +G I+ +I+ + + + + L N + Sbjct: 62 FILSLLNIE---------YKPVGGMNPLIIFFIIILLLPFDISYDSYAPIESLSTTYNEL 112 Query: 132 ENIGKVLYTQYAY 144 IG + Y++YAY Sbjct: 113 NIIGSIFYSEYAY 125 >gi|261864031|gb|ACY01517.1| NADH dehydrogenase subunit 6 [Apteryx australis mantelli] Length = 173 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ V G L LG FV+++ +VY+G Sbjct: 2 TYFVFFLGLCFVLGVLAVASNPSPYYGVLGLVMGSVAGCGCLLSLGVSFVSLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ ++ +++ Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGSWRVWGYGVGFLLVIFMGVVMGGL 107 >gi|94490653|ref|YP_588184.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus] gi|90990881|dbj|BAE92874.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus] Length = 173 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 48/106 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G + LG FV+++ +VY+G Sbjct: 2 TYFMFFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGMSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G FI +LAA +V Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFIVVLAAGAVVGGL 107 >gi|28916747|ref|NP_803168.1| NADH dehydrogenase subunit 6 [Pisaster ochraceus] gi|28881692|emb|CAD70486.1| NADH dehydrogenase subunit 6 [Pisaster ochraceus] Length = 162 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 8/159 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FYL ++ S LV +P Y L+ ++ L L+G F+A++ L++YVG Sbjct: 1 MIFYLTFIFMLLGSTLVFYSLSPYYGALGLVIVSMSGCILCSLVGLSFMALVLLLIYVGG 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F++ + V + + + ++ + NF + E+ + Sbjct: 61 MLVVFVYSSALSAERYPVVSNVNE-------VLVLFLILVLWVSLNFDLLLNFSEVGWVT 113 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 + ++ G VLY+Q + L + G+IL + +I A+V+ Sbjct: 114 YNNVDLVG-GGVLYSQVWWYLVVGGYILFVGLIVALVVT 151 >gi|19481576|gb|AAL88860.1|AF407127_1 NADH dehydrogenase subunit 6 [Petronia dentata] Length = 159 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 2/115 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F++ + + A G ++ L++ ++ S Sbjct: 60 LGGMLVVFVYSVSLAADPYPEAWDSWGVAGYGLGMSLVVMVGLVMGGMGELLVSG 114 >gi|224588006|ref|YP_002640537.1| NADH dehydrogenase subunit 6 [Gallirallus okinawae] gi|224471565|dbj|BAH24060.1| NADH dehydrogenase subunit 6 [Gallirallus okinawae] Length = 173 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 Y ++ V + +P Y V L+ A V G L LG FV+++ +VY+G + Sbjct: 4 LMYFLGVCFVLGGLGVASNPSPYYGVVGLVLASVAGCGWLLSLGLSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V FL+ + + + Sbjct: 64 LVVFLYSVSLAADPYPEGWGDWR 86 >gi|37596525|gb|AAQ95023.1| NADH dehydrogenase subunit 6 [Amadina erythrocephala] Length = 159 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F F F ++ V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLFLGFCF--VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G SF +G++ V F V EG + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYSFGMGLVVMVGFVIGGVFEVLVDEGTV 117 Query: 122 S 122 S Sbjct: 118 S 118 >gi|66276085|ref|YP_238228.1| NADH dehydrogenase subunit 6 [Gavia stellata] gi|34223664|gb|AAQ63019.1| NADH dehydrogenase subunit 6 [Gavia stellata] Length = 173 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 49/103 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L S I+ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLLLSVCFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G+ F +L A ++V Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVMGYGAGFALVLTAGVVV 104 >gi|16797925|gb|AAL29215.1| NADH dehydrogenase subunit 6 [Calidris tenuirostris] Length = 173 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 48/106 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G FI +L A +IV Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFILVLIAGVIVGGL 107 >gi|1171839|sp|P43196|NU6M_CALMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394670|emb|CAA52138.1| NADH dehydrogenase subunit 6 [Calidris maritima] Length = 173 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 47/101 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V Sbjct: 7 LLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 F++ + + A + G+ FI ++ A +IV Sbjct: 67 FVYSVSLAADPFPEAWGDWRVVGYGASFILVVIAGMIVGGL 107 >gi|21104306|emb|CAC80350.1| NADH dehydrogenase subunit 6 [Pinguinus impennis] Length = 173 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G FI +L +IV Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVGFITVLMMGVIV 104 >gi|37596551|gb|AAQ95036.1| NADH dehydrogenase subunit 6 [Lonchura fringilloides] Length = 159 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +G ++V F++ + + + G ++ L++ MV Sbjct: 60 LGGMLVVFVYSVSLAADPYPESWMDWGVASYGFGMGLVIVIGLVIGGITGMV 111 >gi|22536160|gb|AAN01230.1| NADH dehydrogenase subunit 6 [Cryptococcus neoformans var. grubii] Length = 160 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 35/160 (21%) Query: 45 LFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI----EVAEPRKKRGFLGSFFIGI 100 +LLG FV + L+VYVGA+ + FLF++MML+I I V K LG + Sbjct: 1 YLVLLGVGFVGISYLIVYVGAIAILFLFVVMMLNISITEIVSVGREYTKNLPLGFVVGTV 60 Query: 101 LAAELI------------------------VCASNFMVFSAEGELSRLVFKGNN------ 130 E++ + N + +++ ++ +N Sbjct: 61 FFFEILSVIPAATTNAGELPLGLFTYLNGLLLGVNTSITNSDVNMAFANTGADNAFSSHL 120 Query: 131 -VENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 +E IG LYT + L ++ FILLL+M+G I L LR R Sbjct: 121 QIEAIGHGLYTYGSVWLLLASFILLLAMVGPIALCLRPRT 160 >gi|13116563|ref|NP_076842.1| NADH dehydrogenase subunit 6 [Dinornis giganteus] gi|12957439|gb|AAK07714.1| NADH dehydrogenase subunit 6 [Dinornis giganteus] Length = 173 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 45/102 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F I+ + V + +P Y V L+ V G L LGA F++++ +VY+G Sbjct: 2 TYFVLFLGVCFILGALAVASNPSPYYGVLGLVVGSVMGCGWLLSLGASFISLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 ++V F++ + + + G+ + ++ L+ Sbjct: 62 GMLVVFVYSVSLAADPFPETWGDWRVLGFGAGLVLVVFGGLM 103 >gi|37596523|gb|AAQ95022.1| NADH dehydrogenase subunit 6 [Amadina fasciata] Length = 159 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F F F ++ V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLFLGFCF--VLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G SF IG++ V F V EG + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYSFGIGLVVMIGFVVGGVFEVLVDEGVV 117 Query: 122 S 122 S Sbjct: 118 S 118 >gi|255572452|ref|XP_002527162.1| conserved hypothetical protein [Ricinus communis] gi|223533483|gb|EEF35228.1| conserved hypothetical protein [Ricinus communis] Length = 55 Score = 44.2 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 157 MIGAIVLMLRHRRD--IKRQDISKQLESNPDNSI 188 MIGAIVL + +KRQD+ +Q + +I Sbjct: 1 MIGAIVLTMHRTTHEAVKRQDLFRQNAIDFRRTI 34 >gi|1171852|sp|P43208|NU6M_URILO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394692|emb|CAA52119.1| NADH dehydrogenase subunit 6 [Uria lomvia] gi|21104314|emb|CAC80356.1| NADH dehydrogenase subunit 6 [Uria lomvia] Length = 172 Score = 44.2 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 45/103 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCAWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G F+ +L ++V Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGMGFVAVLVMGMVV 104 >gi|2660574|emb|CAA71361.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca] gi|2660576|emb|CAA71267.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca] gi|13508726|emb|CAC35111.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca] gi|13508729|emb|CAC35113.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca] gi|14268378|emb|CAC39329.1| NADH dehydrogenase subunit 6 [Ficedula hypoleuca] Length = 172 Score = 44.2 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F ++ V + +P Y V L+ A + G + LGA FV+++ ++VY Sbjct: 2 MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGASFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84 +G ++V F++ + + A Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81 >gi|240266656|ref|YP_002971033.1| NADH dehydrogenase subunit 6 [Cygnus atratus] gi|209887461|gb|ACI95078.1| NADH dehydrogenase subunit 6 [Cygnus atratus] Length = 173 Score = 44.2 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 47/103 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 AYFMFFLGICFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + + F+ ++ A L+ Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWRVVGYAAVFVTVVFAGLVF 104 >gi|330834248|ref|YP_004408976.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Metallosphaera cuprina Ar-4] gi|329566387|gb|AEB94492.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Metallosphaera cuprina Ar-4] Length = 154 Score = 44.2 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 13/161 (8%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG---AEFVAMITLVVYVGAV 66 LFS +A+ ++ +V +N YS SL F ++ A L + + L++YVGA Sbjct: 2 LFSILALATALFIVNSKNVFYSAVSLAFLGISVAVLIADINPAAYSLYSAFHLILYVGAT 61 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +VF ++M + + + LA + +V S Sbjct: 62 VVFLSISLVMFRGLEVKE--------VKTPWAPSLAIVAAIAFFAVLVLSTSSITPSGTP 113 Query: 127 KGNNVENIGKVLYTQYAYP-LEISGFILLLSMIGAIVLMLR 166 + N+ +G+ L +QY +P + LL +MI A+ L R Sbjct: 114 EQLNLAVVGEKLISQYWFPTFILI-VALLTTMIEALSLARR 153 >gi|55583313|dbj|BAD69578.1| NADH dehydrogenase subunit 6 [Lingula anatina] Length = 201 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 M + F + + ++S FL++ P+ SLI FV ++ L L+ +V I ++ Sbjct: 8 DMVAFFMLVLATCMVVSMFLMLVSPTPMQLSCSLIGFFVTSSCLVALIVHPWVGAILFLI 67 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 Y G ++V F++++ M D E+ + L + + + + + +M + E Sbjct: 68 YGGVILVAFVYVLAM-DPSDEMKISKMDWHLLKVVPLILAVSVIPLFFGGWMGETTE 123 >gi|37596553|gb|AAQ95037.1| NADH dehydrogenase subunit 6 [Lonchura bicolor bicolor] Length = 159 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +G ++V F++ + + + G ++ L++ MV Sbjct: 60 LGGMLVVFVYSVSLAADPYPESWVDWGVASYGFGMGLVIVVGLVIGGITGMV 111 >gi|16797931|gb|AAL29218.1| NADH dehydrogenase subunit 6 [Pluvialis squatarola] Length = 173 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 49/106 (46%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ + V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGVCFVLGALAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ +LA L++ S Sbjct: 62 GMLVVFVYSVALAADPFPEAWGDWRVVGYGVSFVLVLAVGLVIGGS 107 >gi|225690854|gb|ACO06111.1| NADH dehydrogenase subunit 6 [Cleisthenes herzensteini] Length = 173 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 44/113 (38%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + Y F ++ V + +P Y+ + L+ + + GA F++MI ++Y+G Sbjct: 2 AFVMYFILFFFVLGLVAVASNPSPYYAAYGLVVVAGMGCSVLIGHGAPFLSMILFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F F + M V G ++ AA V + S Sbjct: 62 GMLVVFAFAVAMASEPHPVGWNSWAVLGYGLVYMAATAAVAGVLRGGWYESSW 114 >gi|322422405|ref|YP_004221834.1| NADH dehydrogenase subunit 6 [Ixobrychus cinnamomeus] gi|316891687|gb|ADU57296.1| NADH dehydrogenase subunit 6 [Ixobrychus cinnamomeus] Length = 173 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 2/109 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LGA F++++ +VY+G Sbjct: 2 TYFVIFLGVCFVLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGASFISLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 ++V FL+ + + A + +G +L + + Sbjct: 62 GMLVVFLYSVSLAADPFPEAWGDWR--VVGYGVGFVLVCVMGAVIGGLV 108 >gi|1171850|sp|P43206|NU6M_SYNWU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394688|emb|CAA52124.1| NADH dehydrogenase subunit 6 [Synthliboramphus wumizusume] Length = 173 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 47/107 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 ++V F++ + + A + G FI +LAA +V Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFIVVLAAGAVVGGLA 108 >gi|16797934|gb|AAL29219.1| NADH dehydrogenase subunit 6 [Arenaria interpres] Length = 173 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 49/107 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 ++V F++ + + A + G+ F+ ++ + ++V Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGAGFMLVVISGMVVGGIG 108 >gi|1171848|sp|P43204|NU6M_SYNAN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394684|emb|CAA52125.1| NADH dehydrogenase subunit 6 [Synthliboramphus antiquus] Length = 173 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV+++ +VY+G Sbjct: 2 TYFMLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGMSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G FI +LAA +V Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFIVVLAAGAVVGGL 107 >gi|288903516|ref|YP_003434271.1| NADH dehydrogenase subunit 6 [Candida sojae] gi|162401878|gb|ABO27137.1| NADH dehydrogenase subunit 6 [Candida sojae] Length = 146 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 9/154 (5%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S ++ I+S L + + +P+ S+ +LI F++ A G + ++ ++VYVGA+ + FL Sbjct: 2 SLISGIASVLAIGLLSPVQSILALICLFLSVAVSLYSSGYVLMGILYILVYVGAIAILFL 61 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 FI+ +L+I+ +G I+ LI+ + F + + + N + Sbjct: 62 FILSLLNIE---------YTPVGGMSPLIIFLLLILLLPLDISFDSYAPIESVYTAYNEL 112 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + IG + Y++YA L + G IL+LS+IGAI + Sbjct: 113 DIIGTLFYSEYALILLLLGIILVLSVIGAIAITR 146 >gi|213024364|ref|ZP_03338811.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 100 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 38/99 (38%), Gaps = 11/99 (11%) Query: 96 FFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155 +L+A ++ ++ + + + +G L+ Y +E++ +LL Sbjct: 10 IGPAVLSAIMLAVIVYAILGVNDQGIDGTPISA---KAVGITLFGPYVLAVELASMLLLA 66 Query: 156 SMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVK 194 ++ A + R++ + ++ SN + K + Sbjct: 67 GLVVAF--------HVGREERAGEVLSNRADDRAKRKTE 97 >gi|2660580|emb|CAA71364.1| NADH dehydrogenase subunit 6 [Luscinia svecica] Length = 172 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MQFVLF--LGVCFVLGGLAVASNPSPYYGVLGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84 +G ++V F++ + + A Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81 >gi|288900904|ref|YP_003433752.1| Nad6p [Candida viswanathii] gi|162401891|gb|ABP03912.1| Nad6p [Candida viswanathii] Length = 146 Score = 43.9 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 82/154 (53%), Gaps = 9/154 (5%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S ++ I+S L + + +P+ S+ +LI F++ A + G + ++ ++VYVGA+ + FL Sbjct: 2 SLISGIASVLAIGLLSPVQSILALICLFLSIAISLYINGYVLMGILYILVYVGAIAILFL 61 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 FI+ +L+I+ +G I+ LI+ + F + + + N + Sbjct: 62 FILSLLNIE---------YTPVGGMNPLIIFLILIMFLPFDISFESYSPIESINTVTNEL 112 Query: 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + +G + Y++YA L + G IL+LS+IGAI + Sbjct: 113 DIVGTLFYSEYALILLLLGIILVLSVIGAIAITR 146 >gi|313126880|ref|YP_004037150.1| hypothetical protein Hbor_21410 [Halogeometricum borinquense DSM 11551] gi|312293245|gb|ADQ67705.1| hypothetical protein Hbor_21410 [Halogeometricum borinquense DSM 11551] Length = 125 Score = 43.9 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%) Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT------ 140 R + G+ A L V V ++ E N +IG ++ Sbjct: 4 RPRLKLGSHLVPGLAAVALFVVMVAAFVTASFPEPQGFGGDVNITASIGYAMFNLGFGEV 63 Query: 141 ---QYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + EI +L+ +++GA++L R D Q Sbjct: 64 ASESFLVAFEIIDIVLVAALVGAVMLARRETGDSAGQ 100 >gi|37596543|gb|AAQ95032.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] Length = 159 Score = 43.9 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +G ++V F++ + + + G ++ A LIV + ++ Sbjct: 60 LGGMLVVFVYSVSLAADPYPESWADWGVVGYGFGMGLVVVAGLIVGGVSGVL 111 >gi|28972924|gb|AAM95262.1| NADH dehydrogenase subunit 6 [Plexaurella dichotoma] Length = 120 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 17/125 (13%) Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 +IM++ +V + +I + + S + ++ Sbjct: 1 LXXLVIMLIQQPNKVETQDHSHFLP-------VGLSVIFLFYSLLTNSPTYVSNPVIGSR 53 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI----------KRQDISK 178 N+ IG LYT Y + ++ +LL++MIGAI+L + +QD+ + Sbjct: 54 TNIGAIGSHLYTTYYELVLVASLVLLVAMIGAILLAKQPNSPSLYNSYGDSLRSKQDLFQ 113 Query: 179 QLESN 183 Q+ Sbjct: 114 QISRE 118 >gi|238550364|gb|ACR44285.1| NADH dehydrogenase subunit 6 [Melampsora aecidioides] gi|238550378|gb|ACR44292.1| NADH dehydrogenase subunit 6 [Melampsora aecidioides] gi|238550380|gb|ACR44293.1| NADH dehydrogenase subunit 6 [Melampsora aecidioides] gi|238550382|gb|ACR44294.1| NADH dehydrogenase subunit 6 [Melampsora aecidioides] Length = 166 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 34/165 (20%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD--- 78 V+T +P+ SV LI F+ A +L +++++ ++VYVGA+IV LF+I++++ Sbjct: 2 VITSTSPVTSVVYLITVFLLVAAYLVLQNIVYLSLVLVIVYVGAIIVLILFVIIIINLQD 61 Query: 79 IDIEVAEPRKKRGFLGSFFIGIL-----------AAELIVCASNFMVFSAEGEL-----S 122 I P +G FI I + + + S L + Sbjct: 62 IRTTQNIPWSLQGIASLMFIVIFINIDVVHFHADFLSMFQYITLNLNISTNATLDGSSSN 121 Query: 123 RLVFKGNN---------------VENIGKVLYTQYAYPLEISGFI 152 +V K N ++++G LYT + I+ F+ Sbjct: 122 WIVEKTTNMVFNPSDMNLFDLSQIQSLGLSLYTHSFIYIIIASFV 166 >gi|37596529|gb|AAQ95025.1| NADH dehydrogenase subunit 6 [Amandava formosa] Length = 159 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 5/120 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G F +G++ ++ S F V +G + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWADWGVVGYGFGMGLVVMVGLIVGSVFGVLVEDGTV 117 >gi|213026362|ref|ZP_03340809.1| hypothetical protein Salmonelentericaenterica_29535 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 62 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 26/35 (74%) Query: 45 LFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 +F LGA F + ++VY GA++V F+F++MML++ Sbjct: 8 VFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNL 42 >gi|37596517|gb|AAQ95019.1| NADH dehydrogenase subunit 6 [Nigrita bicolor] Length = 159 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V F++ + + E G +G F L + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVLVVGFIIGG 106 >gi|20340062|gb|AAM19666.1| NADH dehydrogenase subunit 6 [Calidris acuminata] Length = 173 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ ++ +IV Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGMSFVLVVIVGMIVGGL 107 >gi|37596541|gb|AAQ95031.1| NADH dehydrogenase subunit 6 [Poephila cincta] Length = 159 Score = 43.5 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V F++ + + E G +G F L + + A+G Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWADWGVVGYGFGMGLVVMVGLIVGGVSGVLADG 114 >gi|37596445|gb|AAQ94983.1| NADH dehydrogenase subunit 6 [Pytilia hypogrammica] gi|37596447|gb|AAQ94984.1| NADH dehydrogenase subunit 6 [Pytilia phoenicoptera] Length = 159 Score = 43.5 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F I+ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G F +G++ + A F V + G + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLTDGGTV 117 >gi|37596449|gb|AAQ94985.1| NADH dehydrogenase subunit 6 [Pytilia lineata] Length = 159 Score = 43.5 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F I+ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G F +G++ + A F V + G + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLTDGGTV 117 >gi|1171845|sp|P43202|NU6M_FRACI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394680|emb|CAA52136.1| NADH dehydrogenase subunit 6 [Fratercula cirrhata] Length = 173 Score = 43.5 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 48/103 (46%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F S ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLSLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G F+G+L L++ Sbjct: 62 GMLVVFVYSVALAADPFPEAWGDWRVVGYGVSFVGVLVMGLVI 104 >gi|1085235|pir||S42246 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 6 - snow goose mitochondrion Length = 173 Score = 43.5 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + + V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 TYFMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + F+ I+ L+ Sbjct: 62 GMLVVFVYSVALAAEPFPGAWGDWRVIGCAVAFVAIVFGGLVF 104 >gi|187251542|ref|YP_001876024.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Elusimicrobium minutum Pei191] gi|186971702|gb|ACC98687.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Elusimicrobium minutum Pei191] Length = 161 Score = 43.5 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 + ++ RN IY+ L G+ +GA + + L V G + V F Sbjct: 11 LVGTALFAAISRNFIYAAMWLALLSATLTGVMFSMGAPWAGVFELSVCSGLITVLFASTA 70 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +L D + A R +R F+ +G+ +++ +F Sbjct: 71 SLLGADSKYA--RNERKFMRFLPLGLFLFGVVLWFISF 106 >gi|89274126|ref|YP_514831.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] gi|89146661|gb|ABD62293.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] gi|90576922|gb|ABD95516.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] gi|90576936|gb|ABD95529.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] gi|90576950|gb|ABD95542.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] Length = 172 Score = 43.5 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596437|gb|AAQ94979.1| NADH dehydrogenase subunit 6 [Clytospiza monteiri] Length = 159 Score = 43.5 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 5/120 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G F +G++ +V F V G + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWADWGVVGYGFGMGLVVVIGLVIGGMFGVLVEGGTV 117 >gi|116875679|ref|YP_850988.1| NADH dehydrogenase subunit 6 [Xenoturbella bocki] gi|110169801|gb|ABG54256.1| NADH dehydrogenase subunit 6 [Xenoturbella bocki] Length = 170 Score = 43.5 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 9/128 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F YLF ++S L+V+ +P +S+ +I + A+ + L G + I L+VY Sbjct: 1 MVMNFVYLFPIFFLLSVILIVSSESPYFSIVGVIIYSILASFMMFLWGYSLLGWIFLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VG ++V F F M +G F + + +V S + S Sbjct: 61 VGGMVVVFSFTASMSSSVFPK---------VGGMFFIVFFSLGLVVLSFYAYLSKWWAFG 111 Query: 123 RLVFKGNN 130 + G+N Sbjct: 112 EVFSFGHN 119 >gi|37596545|gb|AAQ95033.1| NADH dehydrogenase subunit 6 [Emblema pictum] Length = 159 Score = 43.5 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|197935733|ref|YP_002213637.1| NADH dehydrogenase subunit 6 [Anser anser] gi|197131218|gb|ACH47164.1| NADH dehydrogenase subunit 6 [Anser anser] Length = 173 Score = 43.5 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + + V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 TYFMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + F+ I+ L+ Sbjct: 62 GMLVVFVYSVALAAEPFPGAWGDWRVIGCAVAFVAIVFGGLVF 104 >gi|152942492|emb|CAL30087.1| NADH dehydrogenase subunit 6 [Xenoturbella bocki] Length = 170 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 9/128 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F YLF ++S L+V+ +P +S+ +I + A+ + L G + I L+VY Sbjct: 1 MVMNFVYLFPIFFLLSVILIVSSESPYFSIVGVIIYSILASFMMFLWGYSLLGWIFLIVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 VG ++V F F M +G F + + +V S + S Sbjct: 61 VGGMVVVFSFTASMSSSVFPK---------VGGMFFIVFFSLGLVVLSFYAYLSKWWAFG 111 Query: 123 RLVFKGNN 130 + G+N Sbjct: 112 EVFSFGHN 119 >gi|37596511|gb|AAQ95016.1| NADH dehydrogenase subunit 6 [Estrilda perreini perreini] Length = 159 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V LI A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLIVAAVAGCGWLVSLGLSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|19481586|gb|AAL88865.1|AF407132_1 NADH dehydrogenase subunit 6 [Scaphidura oryzivora] Length = 159 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|280978137|ref|YP_003345084.1| NADH dehydrogenase subunit 6 [Kaupichthys hyoproroides] gi|13928306|dbj|BAB47009.1| NADH dehydrogenase subunit 6 [Kaupichthys hyoproroides] gi|271280164|dbj|BAI53209.1| NADH dehydrogenase subunit 6 [Kaupichthys hyoproroides] Length = 172 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 1/110 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F+ M ++ V + +P Y L+ A G+ + G F++++ ++Y Sbjct: 1 MSYLIFFFL-VMVVVGFLCVASNPSPYYGALGLVLAAAGGCGVLMGFGGSFISLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + + + ++ ++G+ + +C + Sbjct: 60 LGGMLVVFAYSAALATEPYPDSWGSSSVFWVMVLYVGLGSVGAGLCYNGL 109 >gi|325149529|ref|YP_004285982.1| NADH dehydrogenase subunit 6 [Zenaida auriculata] gi|304365543|gb|ADM26350.1| NADH dehydrogenase subunit 6 [Zenaida auriculata] Length = 172 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 4/117 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG FVA++ ++VY Sbjct: 2 MEFVLF--LGLCFVFGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVALVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V F++ + + E G +G LA + + F G Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPEAWADWGVVGYGLGMGLAVLVGFVVAGGFEFLGSG 114 >gi|37596469|gb|AAQ94995.1| NADH dehydrogenase subunit 6 [Estrilda erythronotos] Length = 159 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|19481574|gb|AAL88859.1|AF407126_1 NADH dehydrogenase subunit 6 [Motacilla alba] Length = 159 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 4/117 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVMF--LGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V F++ + + E G +G F L + + + F +G Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPEAWVNWGVVGYGFGMALVVIVGLAMGGVLEFLVDG 114 >gi|37596533|gb|AAQ95027.1| NADH dehydrogenase subunit 6 [Neochmia temporalis] Length = 159 Score = 43.1 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V F++ + + E G +G F L + + S Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWGDWGVVGYGFGMGLVIVIGLVVSG 106 >gi|37596451|gb|AAQ94986.1| NADH dehydrogenase subunit 6 [Pytilia afra] Length = 159 Score = 43.1 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 4/117 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F I+ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V F++ + + E G +G F L + + + A+G Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLADG 114 >gi|37596471|gb|AAQ94996.1| NADH dehydrogenase subunit 6 [Estrilda quartinia kilimensis] gi|37596473|gb|AAQ94997.1| NADH dehydrogenase subunit 6 [Estrilda melanotis] Length = 159 Score = 43.1 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596501|gb|AAQ95011.1| NADH dehydrogenase subunit 6 [Spermophaga haematina haematina] Length = 159 Score = 43.1 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|152992443|ref|YP_001358164.1| NADH-quinone oxidoreductase, chain J [Sulfurovum sp. NBC37-1] gi|151424304|dbj|BAF71807.1| NADH-quinone oxidoreductase, chain J [Sulfurovum sp. NBC37-1] Length = 157 Score = 43.1 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 30/81 (37%) Query: 26 RNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 + + ++ S ++ L A+ + + + VY G ++V LF + ++ ++ A Sbjct: 20 KKSVPAMISFALMMFLLGIYYVTLDAKLLGLFQIFVYAGGIVVLMLFGVTIIGVEFPKAA 79 Query: 86 PRKKRGFLGSFFIGILAAELI 106 R +L Sbjct: 80 SRPWAAVSAFLVFVLLTVLFF 100 >gi|37596491|gb|AAQ95006.1| NADH dehydrogenase subunit 6 [Lagonosticta umbrinodorsalis] Length = 159 Score = 43.1 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G F L + + AEGE Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVVVGLVVGGVFGVLAEGET 116 >gi|317176451|dbj|BAJ54270.1| NADH dehydrogenase subunit 6 [Xenomystus nigri] Length = 173 Score = 43.1 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++S ++ V + P Y+ F L+ A GL + G F++++ ++Y+G + Sbjct: 4 LFIVYSVGLMLGLVGVASNPAPYYAAFGLVLAAAAGCGLLVGSGGSFLSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +V F + + E+ + S+F+ + + V A + + AE LS Sbjct: 64 MVVFAYSAALA---AELFPETWGERPVFSYFVIYVVGLVFVGALAYGGWGAESWLS 116 >gi|218157286|ref|YP_002364441.1| NADH dehydrogenase subunit 6 [Eudynamys taitensis] gi|166093095|gb|ABY82528.1| NADH dehydrogenase subunit 6 [Eudynamys taitensis] Length = 173 Score = 43.1 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVVFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G F+ ++A +IV Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVLGYGVGFVLVVAMGMIV 104 >gi|90576908|gb|ABD95503.1| NADH dehydrogenase subunit 6 [Taeniopygia guttata] Length = 172 Score = 43.1 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|156142580|gb|ABU52055.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 43.1 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPXYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 F++ + + E G +G F L + S M Sbjct: 61 FVYSVSLAA--EPYPEAWGSSGVVGYGFGMGLVVVVGFMMSGMM 102 >gi|156142512|gb|ABU52021.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142514|gb|ABU52022.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142516|gb|ABU52023.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142528|gb|ABU52029.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142544|gb|ABU52037.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142550|gb|ABU52040.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142552|gb|ABU52041.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142558|gb|ABU52044.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142560|gb|ABU52045.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142562|gb|ABU52046.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142586|gb|ABU52058.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 43.1 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 46/107 (42%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 F++ + + A G ++A L++ + + S Sbjct: 61 FVYSVSLAAEPYPEAWGNFGVVGYGFGMGLVVAVGLVMSGTTGALVS 107 >gi|19481544|gb|AAL88844.1|AF407111_1 NADH dehydrogenase subunit 6 [Estrilda astrild] Length = 159 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F++ + + E G +G F L + + +GE Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVMVGLVIGGVFGVLVDGETV 117 Query: 123 RLV 125 V Sbjct: 118 NGV 120 >gi|19481550|gb|AAL88847.1|AF407114_1 NADH dehydrogenase subunit 6 [Amandava subflava] Length = 159 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G F +G++ ++ F + EG + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWADWGVVGYGFGMGLVVVIGLIVGGVFGLLVDEGTV 117 >gi|14141920|ref|NP_115375.1| NADH dehydrogenase subunit 6 [Anomalopteryx didiformis] gi|14039598|gb|AAK53332.1|AF338714_1 NADH dehydrogenase subunit VI [Anomalopteryx didiformis] Length = 173 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 41/91 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F I+ + V + +P Y V L+ V G L LGA F++++ +VY+G Sbjct: 2 TYFVLFLGVCFILGALAVASNPSPYYGVLGLVVGSVMGCGWLLSLGASFISLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS 95 ++V F++ + + A + G+ Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVWGFGA 92 >gi|309322034|ref|YP_003935021.1| NADH dehydrogenase subunit 6 [Candida salmanticensis] gi|308746511|gb|ADO51045.1| NADH dehydrogenase subunit 6 [Candida salmanticensis] Length = 201 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 11/129 (8%) Query: 25 VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVA 84 +N + +F+++ +V + + + ++ +++YVGA+ V F+FII +L+I+ Sbjct: 33 TKNIMLCIFNMLNIYVLISLYLYFINLSIIGLLYIMIYVGAITVLFVFIIALLNIEFIEK 92 Query: 85 EPR---------KKRGFLGSFFIGILAAELIV--CASNFMVFSAEGELSRLVFKGNNVEN 133 F I IL + I N + + + + N Sbjct: 93 SNNILINNSLLILTIILSLYFIINILISSDIYNNLYDNINILTLNDNFDFQITTLYILNN 152 Query: 134 IGKVLYTQY 142 IG +LY++Y Sbjct: 153 IGYILYSKY 161 >gi|27819341|ref|NP_777314.1| NADH dehydrogenase subunit 6 [Anser albifrons] gi|27764489|gb|AAO23052.1|AF363031_13 NADH dehydrogenase subunit 6 [Anser albifrons] Length = 173 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 43/103 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + + + V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 TYLMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + F+ I+ L+ Sbjct: 62 GMLVVFVYSVALAAEPFPGAWGDWRVIGCAVAFVAIVFGGLVF 104 >gi|37596515|gb|AAQ95018.1| NADH dehydrogenase subunit 6 [Cryptospiza shelleyi] Length = 159 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596519|gb|AAQ95020.1| NADH dehydrogenase subunit 6 [Parmoptila jamesoni] Length = 160 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596537|gb|AAQ95029.1| NADH dehydrogenase subunit 6 [Neochmia phaeton phaeton] Length = 159 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|1171837|sp|P43195|NU6M_BRAMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394664|emb|CAA52128.1| NADH dehydrogenase subunit 6 [Brachyramphus marmoratus] Length = 173 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LGA FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G FI +L +++ Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVIGYGMGFIVVLVVGVVI 104 >gi|156142530|gb|ABU52030.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 45/107 (42%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 F++ + + A G ++A L++ + S Sbjct: 61 FVYSVSLAAEPYPEAWGNFGVVGYGFGMGLVVAVGLVMSGMTGALVS 107 >gi|37596547|gb|AAQ95034.1| NADH dehydrogenase subunit 6 [Taeniopygia bichenovii] Length = 159 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G F +G++ ++ V + EG + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVMVGLIIGGVSGVLAGEGTV 117 >gi|32567793|ref|NP_075031.2| NADH dehydrogenase subunit 6 [Candida albicans SC5314] gi|74638326|sp|Q9B8D7|NU6M_CANAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|32567805|gb|AAG59588.2|AF285261_1 NADH dehydrogenase subunit 6 [Candida albicans SC5314] Length = 146 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S ++ I+S L + + +P+ S+ +LI FV A G + ++ ++VYVGA+ + FL Sbjct: 2 SLISGIASILAIGLLSPVQSILALILLFVTVAINLYTSGYVLMGILYILVYVGAIAILFL 61 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 FI+ +L+I+ G ++ LI + F + + N + Sbjct: 62 FILSLLNIE---------YKPTGGMHPLVIVLILIPLIPLDIAFEPIAIVESVSTTYNEL 112 Query: 132 ENIGKVLYTQY 142 +G + Y++Y Sbjct: 113 SIVGTLFYSEY 123 >gi|73672056|gb|AAZ80390.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672059|gb|AAZ80392.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672062|gb|AAZ80394.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672065|gb|AAZ80396.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672068|gb|AAZ80398.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672071|gb|AAZ80400.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672074|gb|AAZ80402.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672077|gb|AAZ80404.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672080|gb|AAZ80406.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672083|gb|AAZ80408.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672086|gb|AAZ80410.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319665|gb|ABA02995.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319669|gb|ABA02998.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319672|gb|ABA03000.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319675|gb|ABA03002.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319678|gb|ABA03004.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319681|gb|ABA03006.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319684|gb|ABA03008.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319687|gb|ABA03010.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319690|gb|ABA03012.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319693|gb|ABA03014.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319696|gb|ABA03016.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319698|gb|ABA03017.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] Length = 172 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596427|gb|AAQ94974.1| NADH dehydrogenase subunit 6 [Lagonosticta virata] Length = 159 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 4/117 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V F++ + + E G +G F L + + AEG Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVMVGLVVGGVFGVLAEG 114 >gi|37596531|gb|AAQ95026.1| NADH dehydrogenase subunit 6 [Erythrura trichroa] Length = 159 Score = 42.7 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596535|gb|AAQ95028.1| NADH dehydrogenase subunit 6 [Neochmia ruficauda] Length = 159 Score = 42.7 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|19481548|gb|AAL88846.1|AF407113_1 NADH dehydrogenase subunit 6 [Ortygospiza atricollis] Length = 159 Score = 42.7 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596455|gb|AAQ94988.1| NADH dehydrogenase subunit 6 [Euschistospiza dybowskii] Length = 159 Score = 42.7 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596521|gb|AAQ95021.1| NADH dehydrogenase subunit 6 [Nesocharis shelleyi] Length = 159 Score = 42.7 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596433|gb|AAQ94977.1| NADH dehydrogenase subunit 6 [Lagonosticta rufopicta] Length = 159 Score = 42.7 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|238550360|gb|ACR44283.1| NADH dehydrogenase subunit 6 [Melampsora populnea f. sp. laricis] Length = 166 Score = 42.7 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 34/165 (20%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+T +P+ SV LI F+ A +L +++++ ++VYVGA+IV LF+I+++++ Sbjct: 2 VITSTSPVTSVVYLITVFLLVAAYLVLQNIVYLSLVLVIVYVGAIIVLILFVIIIINLQD 61 Query: 82 EVAE---PRKKRGFLGSFFIGIL-----------AAELIVCASNFMVFSAEGEL-----S 122 P +G FI I + + + S L + Sbjct: 62 MRTTQNIPWSLQGIASLMFIVIFINIDVVHFHADFLSMFQYITLNLNISTNATLDGSSSN 121 Query: 123 RLVFKGNN---------------VENIGKVLYTQYAYPLEISGFI 152 +V K N ++++G LYT + I+ F+ Sbjct: 122 WIVEKTTNMVFNPSDMNLFDLSQLQSLGLSLYTHSFIYIIIASFV 166 >gi|73672506|gb|AAZ80438.1| NADH dehydrogenase subunit 6 [Sitta pusilla] gi|73672509|gb|AAZ80440.1| NADH dehydrogenase subunit 6 [Sitta pusilla] Length = 168 Score = 42.7 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 ++M+ + F ++ + V + +P Y V L+ A V G + LG FV+++ ++ Sbjct: 3 IMMEFVLF--LGLCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVM 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 VY+G ++V F++ + + + Sbjct: 61 VYLGGMLVVFVYSVSLAADPYPESWGNL 88 >gi|119719991|ref|YP_920486.1| NADH-plastoquinone oxidoreductase subunit 6 [Thermofilum pendens Hrk 5] gi|119525111|gb|ABL78483.1| conserved hypothetical NADH-plastoquinone oxidoreductase subunit 6 [Thermofilum pendens Hrk 5] Length = 161 Score = 42.7 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 45/93 (48%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +A+ SS L V V+ Y+ L F ++ A L LLG +VA+ +VYVGA ++F Sbjct: 11 ISCAVAVASSLLAVKVKEDFYAAVLLGFVGLSVASLIALLGFTYVAVFHALVYVGATVLF 70 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102 + ++ + + G L S F G L Sbjct: 71 VIMGVIFIGRGLGYERRMLAAGVLTSVFAGSLF 103 >gi|296099624|gb|ADG95229.1| NADH dehydrogenase subunit 6 [Polypterus endlicherii] Length = 167 Score = 42.7 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 52/112 (46%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 +F +FS + +IS V + +P ++ F L+ A G+ + G F++MI ++Y+G Sbjct: 2 VFMVIFSMIFLISLIAVASNPSPYFAAFGLMVAAGAGCGMLMQCGMTFLSMILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + A + ++ ++ +V NF VF + Sbjct: 62 MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVLLIVGMWVVFVGNFEVFDS 113 >gi|37596453|gb|AAQ94987.1| NADH dehydrogenase subunit 6 [Hypargos margaritatus] Length = 159 Score = 42.7 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|237880844|ref|YP_002907502.1| NADH dehydrogenase subunit 6 [Xenomystus nigri] gi|237648891|dbj|BAH58985.1| NADH dehydrogenase subunit 6 [Xenomystus nigri] Length = 173 Score = 42.7 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++S ++ V + P Y+ F L+ A GL + G F++++ ++Y+G + Sbjct: 4 LFIVYSVGLMLGLVGVASNPAPYYAAFGLVLAAAAGCGLLVGSGGSFLSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +V F + + E+ + S+F+ + + V A + + AE LS Sbjct: 64 MVVFAYSAALA---AELFPETWGERPVFSYFVIYVVGLVFVGALVYGGWGAESWLS 116 >gi|73672089|gb|AAZ80412.1| NADH dehydrogenase subunit 6 [Sitta pusilla] Length = 172 Score = 42.7 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|224483640|gb|ACN51361.1| NADH dehydrogenase subunit 6 [Saxicola rubicola] Length = 172 Score = 42.7 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F++ + + A G ++ ++V Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEAWGDWGVVGHGLGMCLVVMVGIMVGGG 107 >gi|156142546|gb|ABU52038.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142588|gb|ABU52059.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142590|gb|ABU52060.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 42.7 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 46/107 (42%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 F++ + + A G ++A L++ + + S Sbjct: 61 FVYSVSLAAEPYPEAWGNFGVVGYGFGMGLVVAVGLVMSGTAGALVS 107 >gi|255590111|ref|XP_002535174.1| conserved hypothetical protein [Ricinus communis] gi|223523830|gb|EEF27210.1| conserved hypothetical protein [Ricinus communis] Length = 55 Score = 42.7 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 157 MIGAIVLMLRHRRD--IKRQDISKQLESNPDNSI 188 MIGAIVL + +KRQD+ ++ + +I Sbjct: 1 MIGAIVLTMHRTTHGAVKRQDLFRRNAIDFRRTI 34 >gi|5081425|gb|AAD39375.1|AF123895_1 NADH dehydrogenase subunit 6 [Balearica pavonina] Length = 173 Score = 42.7 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V Sbjct: 7 FMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 F++ + + A + FI +L L+V Sbjct: 67 FVYSVSLAADPYPEAWGDWRVMGYAVGFILVLGMGLVV 104 >gi|37596549|gb|AAQ95035.1| NADH dehydrogenase subunit 6 [Aidemosyne modesta] Length = 159 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|239997790|gb|ACS37282.1| NADH dehydrogenase subunit 6 [Columba livia] Length = 173 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + F ++ V + +P Y V L+ A V G L LG F++++ +VY+G Sbjct: 2 TYFVFFLGFSFVLGGLGVASNPSPYYGVVGLVVASVTGCGWLLSLGVSFMSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWDDWR 86 >gi|326535894|ref|YP_004300341.1| NADH dehydrogenase subunit 6 [Emberiza chrysophrys] gi|325305644|gb|ADZ10809.1| NADH dehydrogenase subunit 6 [Emberiza chrysophrys] Length = 172 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LF + V + +P Y V L+ A V G + LG FV+++ ++VY+G Sbjct: 3 LFVLFLGLCFVFGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVPFVSLVLVMVYLGG 62 Query: 66 VIVFFLFIIMM 76 ++V F++ + + Sbjct: 63 MLVVFVYSVSL 73 >gi|73672479|gb|AAZ80420.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672482|gb|AAZ80422.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672485|gb|AAZ80424.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672488|gb|AAZ80426.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672491|gb|AAZ80428.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672494|gb|AAZ80430.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672497|gb|AAZ80432.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672500|gb|AAZ80434.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672503|gb|AAZ80436.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672512|gb|AAZ80442.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672515|gb|AAZ80444.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672518|gb|AAZ80446.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672521|gb|AAZ80448.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672524|gb|AAZ80450.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672527|gb|AAZ80452.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|73672530|gb|AAZ80454.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319558|gb|ABA02924.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319561|gb|ABA02926.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319564|gb|ABA02928.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319567|gb|ABA02930.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319570|gb|ABA02932.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319573|gb|ABA02934.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319576|gb|ABA02936.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319579|gb|ABA02938.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319582|gb|ABA02940.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319585|gb|ABA02942.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319588|gb|ABA02944.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319591|gb|ABA02946.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319594|gb|ABA02948.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319597|gb|ABA02950.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319600|gb|ABA02952.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319603|gb|ABA02954.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319606|gb|ABA02956.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319609|gb|ABA02958.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319612|gb|ABA02960.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319615|gb|ABA02962.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319618|gb|ABA02964.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319621|gb|ABA02966.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319624|gb|ABA02968.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319627|gb|ABA02970.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319630|gb|ABA02972.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319633|gb|ABA02974.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319636|gb|ABA02976.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319639|gb|ABA02978.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319642|gb|ABA02980.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319645|gb|ABA02982.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319648|gb|ABA02984.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319651|gb|ABA02986.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319654|gb|ABA02988.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319657|gb|ABA02990.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319660|gb|ABA02992.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] gi|74319663|gb|ABA02994.1| NADH dehydrogenase subunit 6 [Sitta pygmaea] Length = 168 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 ++M+ + F ++ + V + +P Y V L+ A V G + LG FV+++ ++ Sbjct: 3 IMMEFVLF--LGLCFVLGALGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVM 60 Query: 61 VYVGAVIVFFLFIIMM 76 VY+G ++V F++ + + Sbjct: 61 VYLGGMLVVFVYSVSL 76 >gi|37596439|gb|AAQ94980.1| NADH dehydrogenase subunit 6 [Pytilia melba percivali] Length = 159 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|171187535|gb|ACB41371.1| NADH dehydrogenase subunit J [Mimulus guttatus] Length = 100 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 38 AFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97 F N +GL L LG +F AMI VV++GA+ V FLF++MM +I I R S Sbjct: 1 VFRNTSGLLLFLGLDFFAMIFSVVHIGAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGI 60 Query: 98 IG-ILAAELIVCASNFMVFSAEGELSRLVFKGN 129 IG I E+ N + + + + Sbjct: 61 IGLIFWWEMFFILDNESIPLLPTQRNTTSLRYT 93 >gi|158508409|ref|YP_001527876.1| NADH dehydrogenase subunit 6 [Strongylocentrotus pallidus] gi|157056837|gb|ABV02426.1| NADH dehydrogenase subunit 6 [Strongylocentrotus droebachiensis] gi|158327691|emb|CAP12695.1| NADH dehydrogenase subunit 6 [Strongylocentrotus pallidus] Length = 165 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 12/159 (7%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL + + S LV +P YS L+ V+ + LG+ FVA++ L+VY+G ++V Sbjct: 4 YLTLIVMLFGSTLVFYSLSPYYSALGLVVVSVSGCLILSFLGSSFVAIVLLLVYMGGMLV 63 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F + + + ++ + + FM F +LS + Sbjct: 64 VFAYSSAISAERFPSVNNLGE----------VVGLSFLFSSWVFMSFDNFQDLSNTFYCF 113 Query: 129 NNVENI--GKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + E++ Y + + F+LL++++GA+++ Sbjct: 114 VSGESLVGSSTFYNSGGVLVILGVFVLLIALVGALIISR 152 >gi|325126731|ref|YP_004285878.1| NADH dehydrogenase subunit 6 [Sturnus tristis] gi|324022947|gb|ADY15514.1| NADH dehydrogenase subunit 6 [Sturnus tristis] Length = 172 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F I+ V + +P Y V L+ A V G + LG FV ++ ++VY Sbjct: 2 MEFVLF--LGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVGLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596417|gb|AAQ94969.1| NADH dehydrogenase subunit 6 [Lagonosticta rara] Length = 159 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|224504008|gb|ACN53591.1| NADH dehydrogenase subunit 6 [Balearica pavonina] Length = 173 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V Sbjct: 7 FMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 F++ + + A + FI +L L+V Sbjct: 67 FVYSVSLAADPYPEAWGDWRVMGYAVGFILVLGMGLVV 104 >gi|301353270|ref|YP_003795347.1| NADH dehydrogenase subunit 6 [Pseudopodoces humilis] gi|301016353|gb|ADK47637.1| NADH dehydrogenase subunit 6 [Pseudopodoces humilis] Length = 172 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F I+ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MQFVLF--LGVCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F++ + + A G ++ ++V Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEAWGDWGVVGHGLGMCLVVMVGIMVGGG 107 >gi|156142566|gb|ABU52048.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPR 87 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEAWGN 78 >gi|37596457|gb|AAQ94989.1| NADH dehydrogenase subunit 6 [Uraeginthus ianthinogaster] Length = 159 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVMF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 +G ++V F++ + + E G +G F L + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVMI 100 >gi|19481552|gb|AAL88848.1|AF407115_1 NADH dehydrogenase subunit 6 [Lagonosticta sanguinodorsalis] gi|37596425|gb|AAQ94973.1| NADH dehydrogenase subunit 6 [Lagonosticta rhodopareia jamesoni] Length = 159 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|238550366|gb|ACR44286.1| NADH dehydrogenase subunit 6 [Melampsora abietis-canadensis] gi|238550368|gb|ACR44287.1| NADH dehydrogenase subunit 6 [Melampsora abietis-canadensis] gi|238550370|gb|ACR44288.1| NADH dehydrogenase subunit 6 [Melampsora medusae f. sp. tremuloidis] gi|238550372|gb|ACR44289.1| NADH dehydrogenase subunit 6 [Melampsora medusae f. sp. tremuloidis] gi|238550374|gb|ACR44290.1| NADH dehydrogenase subunit 6 [Melampsora medusae f. sp. tremuloidis] gi|238550376|gb|ACR44291.1| NADH dehydrogenase subunit 6 [Melampsora medusae f. sp. tremuloidis] gi|238550384|gb|ACR44295.1| NADH dehydrogenase subunit 6 [Melampsora populnea f. sp. pinitorqua] gi|238550386|gb|ACR44296.1| NADH dehydrogenase subunit 6 [Melampsora populnea f. sp. pinitorqua] gi|238550388|gb|ACR44297.1| NADH dehydrogenase subunit 6 [Melampsora populnea f. sp. pinitorqua] Length = 166 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 34/165 (20%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD--- 78 V+T +P+ SV LI F+ A +L +++++ ++VYVGA+IV LF+I++++ Sbjct: 2 VITSTSPVTSVVYLITVFLLVAAYLVLQNIVYLSLVLVIVYVGAIIVLILFVIIIINLQD 61 Query: 79 IDIEVAEPRKKRGFLGSFFIGIL-----------AAELIVCASNFMVFSAEGEL-----S 122 I P +G FI I + + + S L + Sbjct: 62 IRTTQNIPWSLQGIASLMFIVIFINIDVVHFHADFLSMFQYITLNLNISTNATLDGSSSN 121 Query: 123 RLVFKGNN---------------VENIGKVLYTQYAYPLEISGFI 152 +V K N ++++G LYT + I+ F+ Sbjct: 122 WIVEKTTNMVFNPSDMNLFDLSQLQSLGLSLYTHSFIYIIIASFV 166 >gi|19481558|gb|AAL88851.1|AF407118_1 NADH dehydrogenase subunit 6 [Quelea quelea] Length = 159 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F++ + + A G ++ LIV Sbjct: 60 LGGMLVVFVYSVSLAADPYPEAWTDWGVVGYGFGLGLVVMIGLIV 104 >gi|37596539|gb|AAQ95030.1| NADH dehydrogenase subunit 6 [Stagonopleura guttata] Length = 159 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|238550362|gb|ACR44284.1| NADH dehydrogenase subunit 6 [Melampsora aecidioides] Length = 159 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V+T +P+ SV LI F+ A +L +++++ ++VYVGA+IV LF+I+++++ Sbjct: 2 VITSTSPVTSVVYLITVFLLVAAYLVLQNIVYLSLVLVIVYVGAIIVLILFVIIIINLQD 61 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 G I L +I + + F A+ Sbjct: 62 IRTTQNIPWSLQG---IASLMFIVIFINIDVVHFHAD 95 >gi|37596441|gb|AAQ94981.1| NADH dehydrogenase subunit 6 [Pytilia melba grotei] Length = 159 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|2660572|emb|CAA71362.1| NADH deyhdrogenase subunit 6 [Ficedula albicollis] gi|2660578|emb|CAA71363.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata] gi|13508732|emb|CAC35109.1| NADH dehydrogenase subunit 6 [Ficedula albicollis] gi|13508735|emb|CAC35117.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata] gi|13508738|emb|CAC35119.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata] gi|13508741|emb|CAC35121.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] gi|14268380|emb|CAC39331.1| NADH dehydrogenase subunit 6 [Ficedula semitorquata] gi|14268382|emb|CAC39349.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] gi|14268384|emb|CAC39350.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] gi|14268386|emb|CAC39351.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] gi|14268388|emb|CAC39352.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] gi|14268390|emb|CAC39353.1| NADH dehydrogenase subunit 6 [Ficedula speculigera] Length = 172 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F ++ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84 +G ++V F++ + + A Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81 >gi|37596527|gb|AAQ95024.1| NADH dehydrogenase subunit 6 [Amandava amandava] Length = 159 Score = 42.3 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596503|gb|AAQ95012.1| NADH dehydrogenase subunit 6 [Pyrenestes ostrinus] Length = 159 Score = 42.3 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|156142564|gb|ABU52047.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 42.3 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPR 87 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEAWGN 78 >gi|37596421|gb|AAQ94971.1| NADH dehydrogenase subunit 6 [Lagonosticta rubricata congica] Length = 159 Score = 42.3 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596493|gb|AAQ95007.1| NADH dehydrogenase subunit 6 [Euschistospiza cinereovinacea cinereovinacea] Length = 159 Score = 42.3 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596513|gb|AAQ95017.1| NADH dehydrogenase subunit 6 [Mandingoa nitidula nitidula] Length = 159 Score = 42.3 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596443|gb|AAQ94982.1| NADH dehydrogenase subunit 6 [Pytilia melba citerior] Length = 159 Score = 42.3 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|156142548|gb|ABU52039.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 42.3 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 1/113 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 F++ + + A G F +G++ A +V + +EG ++ Sbjct: 61 FVYSVSLAAEPYPEAWGNFGVVGYG-FGMGLVVAVGLVMSGTVGALVSEGTVN 112 >gi|37596435|gb|AAQ94978.1| NADH dehydrogenase subunit 6 [Lagonosticta nitidula] Length = 159 Score = 42.3 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|19481564|gb|AAL88854.1|AF407121_1 NADH dehydrogenase subunit 6 [Bubalornis albirostris] Length = 159 Score = 42.3 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFVLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596555|gb|AAQ95038.1| NADH dehydrogenase subunit 6 [Lonchura griseicapilla] Length = 159 Score = 42.3 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVCLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F++ + + E G +G F L + + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVIVIGLLIG 105 >gi|237869153|ref|YP_002907489.1| NADH dehydrogenase subunit 6 [Papyrocranus congoensis] gi|237648877|dbj|BAH58972.1| NADH dehydrogenase subunit 6 [Papyrocranus congoensis] Length = 173 Score = 42.3 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 49/108 (45%), Gaps = 1/108 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F L ++ V + P Y+ L+ + G+ + G F++++ ++Y+G + Sbjct: 4 LFILCLVGMVLGLVAVASNPAPYYAALGLVLSAAAGCGVLIGCGGSFLSLVLFLIYLGGM 63 Query: 67 IVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +V F + + ++ E R G+ + IG++ +++C ++ Sbjct: 64 MVVFAYSAALAAELFPETWGERSVFGYFMVYVIGLVFIGVLICNGWYL 111 >gi|37596431|gb|AAQ94976.1| NADH dehydrogenase subunit 6 [Lagonosticta senegala rhodopsis] Length = 159 Score = 42.3 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|156142592|gb|ABU52061.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142594|gb|ABU52062.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142596|gb|ABU52063.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPR 87 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEAWGN 78 >gi|19481588|gb|AAL88866.1|AF407133_1 NADH dehydrogenase subunit 6 [Molothrus bonariensis] Length = 159 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGMCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|156142518|gb|ABU52024.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142520|gb|ABU52025.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPR 87 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEAWGN 78 >gi|19481554|gb|AAL88849.1|AF407116_1 NADH dehydrogenase subunit 6 [Erythrura gouldiae] Length = 159 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|325126815|ref|YP_004285956.1| NADH dehydrogenase subunit 6 [Bycanistes brevis] gi|304365529|gb|ADM26337.1| NADH dehydrogenase subunit 6 [Bycanistes brevis] Length = 173 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + I+ V + +P Y V L+ V G L LGA F+A++ +VY+G + Sbjct: 4 FVFFLGLAFILGGLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGASFIALVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97 +V F++ + + A + G+ F Sbjct: 64 LVVFVYSVALAADPFPEAWGSWRVLGYGAGF 94 >gi|37596559|gb|AAQ95040.1| NADH dehydrogenase subunit 6 [Lonchura castaneothorax] Length = 158 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596423|gb|AAQ94972.1| NADH dehydrogenase subunit 6 [Lagonosticta rubricata rubricata] Length = 159 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|158508423|ref|YP_001527863.1| NADH dehydrogenase subunit 6 [Strongylocentrotus droebachiensis] gi|158327677|emb|CAP12682.1| NADH dehydrogenase subunit 6 [Strongylocentrotus droebachiensis] Length = 165 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 12/159 (7%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL + + S LV +P YS L+ V+ + LG+ FVA++ L+VY+G ++V Sbjct: 4 YLTLIVMLFGSTLVFYSLSPYYSALGLVVVSVSGCLVLSFLGSSFVAIVLLLVYMGGMLV 63 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F + + + ++ + + FM F +LS Sbjct: 64 VFAYSSAISAERFPSVNNLGE----------VVGLSFLFSSWVFMSFDNFQDLSNTFHCF 113 Query: 129 NNVENI--GKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + E++ Y + + F+LL++++GA+++ Sbjct: 114 ISGESLVGSSTFYNSGGVLVILGVFVLLIALVGALIISR 152 >gi|268324508|emb|CBH38096.1| F420H2-quinone oxidoreductase, subunit J [uncultured archaeon] Length = 160 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M+ + +A++SS V+ R+ YS + + A ++ + + V ++ + Sbjct: 1 MSMEVWVLIALAGIAVLSSLGVLLSRDNFYSSLYMSATLIFVASIYAIFNLQPVFVLIVF 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 V+VGA+ + + + ++P + L + + I AA + ++ + + Sbjct: 61 VFVGAIGI-----VTVAVAATYRSDPESQFSKLWAVPVLITAAVVGFAIYSYNLLNPN 113 >gi|208969329|ref|YP_002267968.1| NADH dehydrogenase subunit 6 [Scarus rubroviolaceus] gi|207081498|gb|ACI23043.1| NADH dehydrogenase subunit 6 [Scarus rubroviolaceus] Length = 173 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 2/133 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S LF+ ++ V + +P Y+ +L+ GL G F+A++ ++Y+G Sbjct: 2 SFLVILFTVGMVLGLIGVASNPSPYYAALALVVVAWAGCGLLTSYGGSFLALVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGELS 122 ++V F + + A R G + + + + +++G Sbjct: 62 GMLVVFAYSSALAAEIYPEAWLRAGPGVAMYLYTFAVVGATLTYLYYWEGGDLASDGVAD 121 Query: 123 RLVFKGNNVENIG 135 +VE + Sbjct: 122 WFSPFAGDVEGVA 134 >gi|1171836|sp|P43194|NU6M_BRABR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394662|emb|CAA52127.1| NADH dehydrogenase subunit 6 [Brachyramphus brevirostris] Length = 173 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 39/80 (48%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G FL LGA FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWFLSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVA 84 ++V F++ + + A Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81 >gi|108793334|ref|YP_637164.1| NADH dehydrogenase subunit 6 [Pelobates cultripes] gi|88683170|emb|CAI38769.1| NADH dehydrogenase subunit 6 [Pelobates cultripes] Length = 169 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 41/100 (41%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 F + ++ V + +P ++ L+ + + GA F++++ +VY+G ++V F Sbjct: 8 FFILMVLGLVAVASNPSPYFAALGLVMVSAAGCWVIISAGASFLSLVLFLVYLGGMMVVF 67 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + + A G+ ++G+L + Sbjct: 68 AYSAALTAEPYPEAWGNWAVGWYILVYLGLLWLVSYLVGG 107 >gi|116734736|ref|YP_842372.1| NADH dehydrogenase subunit 6 [Dryocopus pileatus] gi|109676628|gb|ABG37719.1| NADH dehydrogenase subunit 6 [Dryocopus pileatus] Length = 173 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 43/107 (40%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F I+ V + +P Y V L+ A V G L +G FVA++ +VY+G Sbjct: 2 TYFMLFLGVCFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSVGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 ++V F++ + + + G +G L +V Sbjct: 62 GMLVVFVYSVALAADPFPETWGDWRVLGYGVGLVGTLLMGAVVGGVG 108 >gi|37596489|gb|AAQ95005.1| NADH dehydrogenase subunit 6 [Euplectes hordeaceus] Length = 159 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFVLGGLAVASNPSPYYGAAGLVVAAIAGGGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + D E G+ + I+ ++V +V S + Sbjct: 60 LGGMLVVFVYSVSLAADPYPETWTDWGVVGYGFGLGLVIMVGLVVVGLPGQLVGSGTADS 119 Query: 122 SRLV 125 L+ Sbjct: 120 GGLL 123 >gi|310007459|gb|ADP00771.1| NADH dehydrogenase subunit 6 [Morone chrysops] Length = 172 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 4/157 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ + F+L F ++S V +P Y F L+ + + LG F+A+I ++ Sbjct: 1 MMTYAACFFLVGF--VLSMVAVACNPSPFYGSFGLVAVAGFGCAVVVGLGGTFLALILVM 58 Query: 61 VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-MVFSAE 118 +YVGA++V F++ + D E G G + +G+LAA + +++ Sbjct: 59 IYVGAMLVVFVYSAALAADRYPESWGSGGVAGQAGGYLLGLLAAFSFFWKEEYGVLWGPV 118 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155 G + + ++ + + + A + +G +LL Sbjct: 119 GSVEGWASQRGDISGVSWMYSSGGALLVISAGALLLT 155 >gi|291612287|ref|YP_003540720.1| NADH dehydrogenase subunit 6 [Columba livia] gi|290775870|gb|ADD62365.1| NADH dehydrogenase subunit 6 [Columba livia] Length = 173 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 40/85 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + F ++ + + +P Y V L+ A V G L LG F++++ +VY+G Sbjct: 2 TYFVFFLGFSFVLGGLGMASNPSPYYGVVGLVVASVTGCGWLLSLGVSFMSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWDDWR 86 >gi|156142510|gb|ABU52020.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142522|gb|ABU52026.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 41.9 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 2/104 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 F++ + + E G +G F L + + S M Sbjct: 61 FVYSVSLAA--EPYPEAWGSSGVVGYSFGMGLVVVVGLMMSGMM 102 >gi|37596565|gb|AAQ95043.1| NADH dehydrogenase subunit 6 [Lemuresthes nana] Length = 159 Score = 41.9 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596509|gb|AAQ95015.1| NADH dehydrogenase subunit 6 [Estrilda caerulescens] Length = 159 Score = 41.9 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596495|gb|AAQ95008.1| NADH dehydrogenase subunit 6 [Uraeginthus cyanocephalus] Length = 159 Score = 41.9 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596499|gb|AAQ95010.1| NADH dehydrogenase subunit 6 [Uraeginthus bengalus] Length = 159 Score = 41.9 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596429|gb|AAQ94975.1| NADH dehydrogenase subunit 6 [Lagonosticta senegala rendalli] Length = 159 Score = 41.9 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|15805906|ref|NP_294604.1| NADH-ubiquinone/plastoquinone subunit [Deinococcus radiodurans R1] gi|6458595|gb|AAF10453.1|AE001941_6 NADH-ubiquinone/plastoquinone subunit, putative [Deinococcus radiodurans R1] Length = 814 Score = 41.9 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 1/118 (0%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 + + + + V+ N + +V +A FL L A +A+ L+V V + F Sbjct: 602 IAVLLVGGAVGVLLSNNRLTAVIVTGLTGFGSAAAFLALRAPDLALTQLLVEAVTV-ILF 660 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 L L ++ R + G + ++ S+ + LV Sbjct: 661 LLAFRYLPGARDLPRARGRLVLDGLLAVAAGVGVTLLVLSSLRFLATPISPWYLVNSY 718 >gi|37596497|gb|AAQ95009.1| NADH dehydrogenase subunit 6 [Uraeginthus angolensis] Length = 159 Score = 41.9 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|37596419|gb|AAQ94970.1| NADH dehydrogenase subunit 6 [Lagonosticta larvata nigricollis] Length = 159 Score = 41.9 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|224483634|gb|ACN51358.1| NADH dehydrogenase subunit 6 [Saxicola torquata axillaris] gi|224483636|gb|ACN51359.1| NADH dehydrogenase subunit 6 [Saxicola torquata axillaris] Length = 172 Score = 41.9 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F++ + + A G ++ +V Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEAWGDWGVVGRGLGMCLVVMVGFMVGGG 107 >gi|37596463|gb|AAQ94992.1| NADH dehydrogenase subunit 6 [Estrilda troglodytes] gi|37596465|gb|AAQ94993.1| NADH dehydrogenase subunit 6 [Estrilda melpoda] gi|37596467|gb|AAQ94994.1| NADH dehydrogenase subunit 6 [Estrilda rhodopyga] Length = 159 Score = 41.9 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|148922668|ref|YP_001293747.1| NADH dehydrogenase subunit 6 [Etrumeus teres] gi|148762616|dbj|BAF64060.1| NADH dehydrogenase subunit 6 [Etrumeus teres] Length = 175 Score = 41.9 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MVM+ + + ++S V + P Y +L+ A + L + GA F++++ + Sbjct: 1 MVMELMIITWL-VVLVLSIIGVSSNPAPFYGALALVIAAGSGGVLLAVFGAPFLSLVFFL 59 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 +Y+G ++V F + + FF+G+ A ++ ++ F Sbjct: 60 IYLGGMLVVFGYATALAADSDPETLADDTAFEFVVFFVGLAAVGVMWFWGSWYEFG 115 >gi|37596461|gb|AAQ94991.1| NADH dehydrogenase subunit 6 [Estrilda paludicola] Length = 159 Score = 41.9 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|326535908|ref|YP_004300354.1| NADH dehydrogenase subunit 6 [Emberiza tristrami] gi|325305658|gb|ADZ10822.1| NADH dehydrogenase subunit 6 [Emberiza tristrami] Length = 172 Score = 41.9 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LF ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G Sbjct: 3 LFVLFLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRK 88 ++V F++ + + A Sbjct: 63 MLVVFVYSVSLAADPYPEAWDSW 85 >gi|37596561|gb|AAQ95041.1| NADH dehydrogenase subunit 6 [Lonchura cantans] Length = 159 Score = 41.9 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|19481584|gb|AAL88864.1|AF407131_1 NADH dehydrogenase subunit 6 [Fringilla coelebs] Length = 159 Score = 41.9 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--MGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +G ++V F++ + + E G +G F L + + A + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWASWGVVGYGFGLGLVVLVGIVAGGML 108 >gi|37596505|gb|AAQ95013.1| NADH dehydrogenase subunit 6 [Estrilda nonnula] Length = 159 Score = 41.9 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|49257002|dbj|BAD24801.1| NADH dehydrogenase subunit 6 [Varanus komodoensis] Length = 176 Score = 41.9 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y I+S +V + +P+Y V SL+F A G+ ++ G F++++ +VY+G +IV Sbjct: 6 YAMLGGLIVSGLMVSSNPSPLYGVVSLVFLAFLACGVLVVCGYSFLSLVLFLVYLGGMIV 65 Query: 69 FFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 F + + M + FLG + +I+ +++ Sbjct: 66 VFAYSVAMASELRPEAWLDWSVLPRFLGGLIGIFVVMGMILGGDVGVLY 114 >gi|13508744|emb|CAC35115.1| NADH dehydrogenase subunit 6 [Ficedula parva] gi|14268392|emb|CAC39330.1| NADH dehydrogenase subunit 6 [Ficedula parva] Length = 172 Score = 41.9 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F I+ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MQFVLF--LGVCFILGGLAVASNPSPYYGVVGLVLASIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84 +G ++V F++ + + A Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81 >gi|301353491|ref|YP_003795711.1| NADH dehydrogenase subunit 6 [Morone saxatilis] gi|300069619|gb|ADJ66721.1| NADH dehydrogenase subunit 6 [Morone saxatilis] Length = 172 Score = 41.9 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 4/157 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ + F+L F ++S V +P Y F L+ + + LG F+A+I ++ Sbjct: 1 MMTYAACFFLVGF--VLSMVAVACNPSPFYGSFGLVAVAGFGCAVVVGLGGTFLALILVM 58 Query: 61 VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-MVFSAE 118 +YVGA++V F++ + D E G G + +G++AA + +++ Sbjct: 59 IYVGAMLVVFVYSAALAADRYPESWGSGGVAGQAGGYLLGLMAAFSFFWKEEYGVLWGPV 118 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155 G + + ++ + + + A + +G +LL Sbjct: 119 GSVEEWASQRGDISGVSWMYSSGGALLVISAGALLLT 155 >gi|37596507|gb|AAQ95014.1| NADH dehydrogenase subunit 6 [Estrilda atricapilla] Length = 159 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|16797923|gb|AAL29214.1| NADH dehydrogenase subunit 6 [Tringa glareola] Length = 173 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +L ++ V + +P Y V L+ A + G L LG FV+++ +VY+G Sbjct: 2 TYFVFLLGLCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLLSLGISFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|156142576|gb|ABU52053.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142578|gb|ABU52054.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142598|gb|ABU52064.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPR 87 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEAWGN 78 >gi|46358646|ref|YP_006421.1| NADH dehydrogenase subunit 6 [Eudromia elegans] gi|46310029|gb|AAS87297.1| NADH dehydrogenase subunit VI [Eudromia elegans] Length = 173 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 46/103 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ + V +P Y V L+ V G + LG FV+++ +VY+G Sbjct: 2 TYFVFFLGVGLVMGALAVACNPSPYYGVLGLVLGSVMGCGWLVSLGVSFVSLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G F+ I+ +++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVQYGVGFMMIVLVGVVL 104 >gi|126792914|gb|ABO27313.1| NADH dehydrogenase subunit 6 [Bolborhynchus lineola] Length = 171 Score = 41.9 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 46/107 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++++ LV + +P Y V L+F V G + LGA FV+++ +VY+G Sbjct: 2 AYFVLLLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 ++V F++ + + + + +L V Sbjct: 62 GMLVVFVYSVSLAADPFPQVWGGWRVVGYALGLVCVLGVGWAVWGWG 108 >gi|322422363|ref|YP_004221795.1| NADH dehydrogenase subunit 6 [Luscinia calliope] gi|316891673|gb|ADU57283.1| NADH dehydrogenase subunit 6 [Luscinia calliope] Length = 172 Score = 41.9 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84 +G ++V F++ + + A Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81 >gi|19481542|gb|AAL88843.1|AF407110_1 NADH dehydrogenase subunit 6 [Hypargos niveoguttatus] Length = 159 Score = 41.9 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVIGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V F++ + + E G +G F L + + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVVIGLVIGG 106 >gi|1171849|sp|P43205|NU6M_SYNHY RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394686|emb|CAA52126.1| NADH dehydrogenase subunit 6 [Synthliboramphus hypoleucus] Length = 173 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 41/95 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMLFLGLCFVLGGLGVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 ++V F++ + + A + G FI Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFIA 96 >gi|84488830|ref|YP_448776.1| NADH dehydrogenase subunit 6 [Phanogenia gracilis] gi|66731081|gb|AAY51834.1| NADH dehydrogenase subunit 6 [Phanogenia gracilis] Length = 163 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 66/152 (43%), Gaps = 9/152 (5%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+ + ++ + LV +P +S L+ +++ + L G F+A+I L+VY+G +++ Sbjct: 4 YISIILTLLGTSLVFYSLSPYFSALGLVIVSISSCLILLQTGMNFLALIILLVYMGGMLI 63 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F++ + + + + + IL +I+ +N +S + Sbjct: 64 VFIYSSALSAERFPTISNINE---IITLCLFILFWNIILFENNNWNSVNNTNISNSISIE 120 Query: 129 NNVENIGKVLYTQYAYPLEI-SGFILLLSMIG 159 L++ + +G+ILL+S+I Sbjct: 121 G-----ASYLFSPTMIWFFLFAGYILLISLIA 147 >gi|224483638|gb|ACN51360.1| NADH dehydrogenase subunit 6 [Saxicola rubicola] Length = 172 Score = 41.9 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A V G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +V F++ + + A G ++ ++V Sbjct: 64 LVVFVYSVSLAAEPYPEAWGDWGVVGHGLGMCLVVMVGIMVGGG 107 >gi|156142524|gb|ABU52027.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 41.6 bits (97), Expect = 0.055, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPR 87 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEAWSN 78 >gi|326535950|ref|YP_004300393.1| NADH dehydrogenase subunit 6 [Sturnus cineraceus] gi|325305686|gb|ADZ10848.1| NADH dehydrogenase subunit 6 [Sturnus cineraceus] Length = 172 Score = 41.6 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F F F I+ V + +P Y V L+ A V G + L FV ++ ++VY Sbjct: 2 MEFVLFLGFCF--ILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLEVSFVGLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|21449944|ref|NP_659361.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|21425436|emb|CAD21743.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|150372681|dbj|BAF66143.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|290544739|gb|ADD37191.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] Length = 175 Score = 41.6 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+VC Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLVC 105 >gi|238550563|gb|ACR44416.1| NADH dehydrogenase subunit 6 [Alectoris chukar] Length = 173 Score = 41.6 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + V + +P Y V L+ A V G + LG F++++ ++Y+G Sbjct: 2 TYFVIFLGVSFALGVLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFLSLVLFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F++ + + A + +G +L + V F+ F Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGNWR--VVGYGLGFVLVVFMGVVLGGFVDF 110 >gi|37886710|gb|AAR04680.1| NADH dehydrogenase subunit 6 [Coragyps atratus] Length = 170 Score = 41.6 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 ++V F++ + + A ++ G I +LA + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDRRVVGYGVGLILVLAVGV 102 >gi|37596459|gb|AAQ94990.1| NADH dehydrogenase subunit 6 [Uraeginthus granatina] Length = 159 Score = 41.6 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 +G ++V F++ + + E G +G F L + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVDWGVVGYGFGMGLVVMI 100 >gi|116734813|ref|YP_842411.1| NADH dehydrogenase subunit 6 [Pteroglossus azara flavirostris] gi|109676670|gb|ABG37758.1| NADH dehydrogenase subunit 6 [Pteroglossus azara flavirostris] Length = 173 Score = 41.6 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+FA V G + LG FV ++ +VY+G Sbjct: 2 AYFLLFLGVCFVLGGLAVASNPSPYYGVMGLVFASVVGCGWLVSLGMSFVGLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|238550619|gb|ACR44468.1| NADH dehydrogenase subunit 6 [Phasianus colchicus] gi|332347422|gb|AEE60519.1| NADH dehydrogenase subunit 6 [Phasianus colchicus] Length = 173 Score = 41.6 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 45/105 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG F++++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVLGLVLASVVGCGWLVSLGVSFISLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++V F++ + + A + G F+ ++ + + Sbjct: 62 GMLVVFVYSVSLAADPYPQAWGDWRVVGYGLGFVLVVCVGVFLAG 106 >gi|16357260|ref|NP_443357.1| NADH dehydrogenase subunit 6 [Coelorinchus kishinouyei] gi|16267015|dbj|BAB70168.1| NADH dehydrogenase subunit 6 [Coelorinchus kishinouyei] Length = 173 Score = 41.6 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 9/137 (6%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ + + + +P+Y+V L+ A + + G F++++ +VY+G ++V F + Sbjct: 13 VLGAAALASNPSPVYAVLGLVLMAGMACMILINSGGPFLSLLFFLVYLGGMLVVFAHCVA 72 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV---- 131 + A FLG+ ++ + V F E + + Sbjct: 73 LAAERYPKAWGDV--IFLGALVGVVVGYSVAVIVGWVNWFGVGSESGYDFDDYSFICPEG 130 Query: 132 ENIGKVLYTQ--YAYPL 146 E +G +LY + + Sbjct: 131 EGLG-LLYDKGGWLLLF 146 >gi|221143482|ref|YP_002519496.1| NADH dehydrogenase subunit 6 [Scarus forsteni] gi|220961584|gb|ACL93255.1| NADH dehydrogenase subunit 6 [Scarus forsteni] Length = 173 Score = 41.6 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 2/133 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S LF+ ++ V + +P Y+ +L+ GL G F+A++ ++Y+G Sbjct: 2 SFLVILFTVGMVLGLIGVASNPSPYYAALALVVVAWAGCGLLTSYGGSFLALVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGELS 122 ++V F + + A R G + + + + + +G + Sbjct: 62 GMLVVFAYSSALAAEIYPEAWLRAGPGVAMYLYTFAVVGATLTYLYYWEGGDLALDGVVD 121 Query: 123 RLVFKGNNVENIG 135 L +VE + Sbjct: 122 WLSPFAGDVEGVA 134 >gi|221145448|ref|YP_002519662.1| NADH dehydrogenase subunit 6 [Scarus schlegeli] gi|219560077|gb|ACL27241.1| NADH dehydrogenase subunit 6 [Scarus schlegeli] Length = 173 Score = 41.6 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 2/133 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S LF+ ++ V + +P ++ +L+ GL G F+A++ ++Y+G Sbjct: 2 SFLVVLFTIGLVLGLIGVASNPSPYFAALALVVVAWAGCGLLTSYGGSFLALVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGELS 122 ++V F + + A R G + + +V N+ + +G + Sbjct: 62 GMLVVFAYSSALAAEIYPEAWLRAGPGVAMYLYTSAVLVATVVYLYNWEGGDLALDGVVD 121 Query: 123 RLVFKGNNVENIG 135 RL +VE + Sbjct: 122 RLSPLAGDVEGVA 134 >gi|288903402|ref|YP_003434125.1| NADH dehydrogenase subunit 6 [Candida maltosa] gi|162401915|gb|ABX10007.1| NADH dehydrogenase subunit 6 [Candida maltosa] Length = 147 Score = 41.6 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 12/156 (7%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 S ++ +S+ L V + +P+ S+ ++I FV+ A G + ++ ++VYVGA+ + FL Sbjct: 2 SIISGLSAILAVGLLSPVQSIVAMIILFVSVAITLYNTGFTLLGILYVLVYVGAIALLFL 61 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 FI+ +L+I A ++ L+VC F +FS + +V Sbjct: 62 FILSLLNIQYTAAGGMNP----------LIIFLLLVCLVPFEIFSEPLGVVEIVQNNATE 111 Query: 132 E--NIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 E +G + YT+Y L + G IL+LS+IGAI + Sbjct: 112 ELLTVGSLFYTEYGIILLLIGVILILSVIGAICITR 147 >gi|11643337|gb|AAG39529.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 41.6 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 37/70 (52%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|302348177|ref|YP_003815815.1| NADH-quinone oxidoreductase subunit J [Acidilobus saccharovorans 345-15] gi|302328589|gb|ADL18784.1| NADH-quinone oxidoreductase subunit J [Acidilobus saccharovorans 345-15] Length = 165 Score = 41.6 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 1/110 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S MAI S+ LVV +++ +Y+ +L A L + G V+ ++VYVGA ++F Sbjct: 14 VLSIMAIASAMLVVRLKDLVYASITLAILGSFTAALLAVAGFGLVSAYLVLVYVGAAVMF 73 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 + I M+ + + RG + + ++V + + +F+ Sbjct: 74 IVISISMIGPQGQESFDSF-RGLTVAAALATFIITVVVISELYRLFTVPP 122 >gi|19481580|gb|AAL88862.1|AF407129_1 NADH dehydrogenase subunit 6 [Carduelis pinus] Length = 159 Score = 41.6 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G F +G++ +V + + EG + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVSWGVVGYGFGMGLVVLVGLVMGGMLGLLAEEGTV 117 Query: 122 S 122 + Sbjct: 118 N 118 >gi|126792908|gb|ABO27310.1| NADH dehydrogenase subunit 6 [Nannopsittaca dachilleae] Length = 171 Score = 41.6 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++++ LV + +P Y V L+F V G F+ LGA F++++ +VY+G Sbjct: 2 AYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 ++V F++ + + + G +G + ++ + +V+ GE Sbjct: 62 GMLVVFVYSVSLAADPFPQV-------WXGWRVVGYILGLVLALSVGCVVWGWGGEF 111 >gi|299823716|ref|YP_003734509.1| NADH dehydrogenase subunit 6 [Brevoortia tyrannus] gi|299758123|dbj|BAJ09827.1| NADH dehydrogenase subunit 6 [Brevoortia tyrannus] Length = 173 Score = 41.6 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 2/112 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +LF F ++ V + P ++ L+ + + + G+ F+A+ ++Y+G Sbjct: 5 VCLWLFGF--VLGMVGVASNPAPYFAALGLVMSSGAGCAVLAMFGSPFLALALFLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + + F+ ++ A L+ S + FSA Sbjct: 63 MLVVFGYSAALAADPHPESWGDASVFEHAMFYFVVVIAGLLYFGSTWYDFSA 114 >gi|148922584|ref|YP_001293656.1| NADH dehydrogenase subunit 6 [Alosa pseudoharengus] gi|148762518|dbj|BAF63969.1| NADH dehydrogenase subunit 6 [Alosa pseudoharengus] Length = 173 Score = 41.6 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +LF F ++ V + P ++ L+ + + + G+ F+A+ ++Y+G Sbjct: 5 VCLWLFGF--VLGMVGVASNPAPYFAALGLVMSSGAGCAVLAMFGSPFLALALFLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + + F+ ++ A L+ S++ FSA Sbjct: 63 MLVVFGYSAALAADPHPESWGDASVFEHAMFYFVVVVAGLLYFGSSWYDFSA 114 >gi|37596563|gb|AAQ95042.1| NADH dehydrogenase subunit 6 [Lonchura malabarica] Length = 159 Score = 41.6 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|156142534|gb|ABU52032.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 41.6 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPR 87 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEAWGN 78 >gi|71658006|ref|YP_272097.1| NADH dehydrogenase subunit 6 [Gallus varius] gi|71040248|dbj|BAE16103.1| NADH dehydrogenase subunit 6 [Gallus varius] Length = 173 Score = 41.6 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ + V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGICFMLGALAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F++ + + A + +G +L + V F+ F Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR--VVGYGLGFVLVVWMGVVLGGFVDF 110 >gi|126792906|gb|ABO27309.1| NADH dehydrogenase subunit 6 [Aratinga leucophthalma] Length = 170 Score = 41.6 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 46/106 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++++ LV T +P Y V L+F + G + LGA F++++ +VY+G Sbjct: 2 TYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A F+ + +I Sbjct: 62 GMLVVFVYSVSLAADPFPQAWGGWHAAGYVLGFVPVGMGFVIWGWG 107 >gi|2789675|gb|AAB96918.1| NADH-ubiquinone oxidoreductase subunit 6 [Geomys personatus] Length = 174 Score = 41.6 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 42/104 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ +V +PIY+ LI + GL L G ++ ++ ++Y+G ++V Sbjct: 7 YLLLVAMVVGFLVVAVKPSPIYAGLGLIISGGAGCGLLLYHGCSYMGLMVYLIYLGGMLV 66 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + + IL LIV ++ Sbjct: 67 VFGYTTALATEEYPEDWGSNVWVWFLLLSGIILEVILIVLFMDY 110 >gi|16797936|gb|AAL29220.1| NADH dehydrogenase subunit 6 [Tringa totanus] Length = 173 Score = 41.6 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 39/83 (46%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G + Sbjct: 4 FVFLLGMCFVLGGLAVASNPSPYYGVVGLVLASVAECGWLLSLGVSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F++ + + A + Sbjct: 64 LVVFVYSVSLAADPFPEAWGDWR 86 >gi|86990387|ref|YP_492677.1| NADH dehydrogenase subunit 6 [Acanthaster brevispinus] gi|86476026|dbj|BAE79190.1| NADH dehydrogenase subunit 6 [Acanthaster brevispinus] Length = 162 Score = 41.2 bits (96), Expect = 0.071, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 8/159 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY+ + ++ S LV +P + L+ V+ L LG+ FVA++ +++Y+G Sbjct: 1 MVFYIVLVVMLLGSTLVFYSLSPYFGALGLVLVAVSGCVLCGFLGSSFVALVLVLIYMGG 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F++ + V + L + + + + S LV Sbjct: 61 MLVVFVYSTAISAERYPVVSNLNEVFLLSGVGVVWVFVSFDPFLGFSLGGWSVVVESDLV 120 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 G +G L + GF+ L +++ A+V+ Sbjct: 121 GGGTLYNVLGGYL--------LVGGFVFLFALVVALVIT 151 >gi|16356937|ref|NP_443656.1| NADH dehydrogenase subunit 6 [Monopterus albus] gi|16267252|dbj|BAB70376.1| NADH dehydrogenase subunit 6 [Monopterus albus] Length = 173 Score = 41.2 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 40/106 (37%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + F ++ S V + +P ++ L+ G+ + G F+ ++ ++Y+G ++V Sbjct: 7 VLLFGLMVGSVGVASNPSPYFAAMGLVMVSGVGCGVLICFGGSFLPLVFFLIYLGGMMVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 F F + + + ++ + V + F Sbjct: 67 FAFSAALSAEPYPYGWGNRSVKMYVAAYVLGVGCAWKVLLGKWSGF 112 >gi|296099652|gb|ADG95255.1| NADH dehydrogenase subunit 6 [Polypterus sp. Koliba] Length = 167 Score = 41.2 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS + +IS V + +P ++ F L+ G+ + G F++MI ++Y+G Sbjct: 2 VLMVIFSMIFLISLIAVASNPSPYFAAFGLMVGAGAGCGMLMQCGMTFLSMILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + A + ++ ++ +V +F VF + Sbjct: 62 MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVLLIVGAWVVFVGDFEVFDS 113 >gi|124027085|ref|YP_001012405.1| hypothetical protein Hbut_0188 [Hyperthermus butylicus DSM 5456] gi|123977779|gb|ABM80060.1| hypothetical protein Hbut_0188 [Hyperthermus butylicus DSM 5456] Length = 180 Score = 41.2 bits (96), Expect = 0.077, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S+ + +A+ S V R IYS+ L+ + + +F L G ++A+ L +YVG Sbjct: 14 SVLLGSLATVAV-GSIAAVRARKTIYSILGLVTLALGVSAVFALHGYTYLAVFILAIYVG 72 Query: 65 AVIVFFLFIIMML 77 A + ++M+ Sbjct: 73 AGVTLIALVVMVT 85 >gi|326535880|ref|YP_004300328.1| NADH dehydrogenase subunit 6 [Cyanoptila cyanomelana] gi|325305630|gb|ADZ10796.1| NADH dehydrogenase subunit 6 [Cyanoptila cyanomelana] Length = 172 Score = 41.2 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 MQ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MQFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84 +G ++V F++ + + A Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEA 81 >gi|157488901|gb|ABV57854.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488903|gb|ABV57855.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488907|gb|ABV57857.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 41.2 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|54310681|ref|YP_133820.1| NADH dehydrogenase subunit 6 [Numida meleagris] gi|54144461|dbj|BAD60942.1| NADH dehydrogenase subunit 6 [Numida meleagris] Length = 173 Score = 41.2 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 47/106 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ + V + +P Y V L+ A V G + LG F+++ ++Y+G Sbjct: 2 TYFMIFLGVSFMLGTLAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFISLALFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ ++ A +++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWRVVGYGLGFVLVVCAGVVLGGL 107 >gi|208433855|ref|YP_002265560.1| NADH dehydrogenase subunit 6 [Cantherhines pardalis] gi|207367043|dbj|BAG72019.1| NADH dehydrogenase subunit 6 [Cantherhines pardalis] Length = 173 Score = 41.2 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF F ++ V + +P ++ L+ G+ L G F++++ ++Y+G ++V Sbjct: 7 LFLFGLVMGLLAVASNPSPYFAALGLVVTAGLGCGVLLGHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 F + + AEP + G + +L L+V + + E S + Sbjct: 67 FAYSAAL------AAEPYPESWGSGPVVMALLWYLLMVGMGVALFQAGWYEYSWAPADES 120 Query: 130 NVENIGK 136 V +G+ Sbjct: 121 GVFAMGR 127 >gi|11643363|gb|AAG39542.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643367|gb|AAG39544.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643375|gb|AAG39548.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643381|gb|AAG39551.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 41.2 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + E G +G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120 >gi|157488875|gb|ABV57841.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 41.2 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGAVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|156142570|gb|ABU52050.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142572|gb|ABU52051.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 41.2 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPR 87 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEAWGN 78 >gi|156142568|gb|ABU52049.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 41.2 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPR 87 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEAWGN 78 >gi|11643241|gb|AAG39481.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643243|gb|AAG39482.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643247|gb|AAG39484.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643249|gb|AAG39485.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643251|gb|AAG39486.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643253|gb|AAG39487.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643255|gb|AAG39488.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643257|gb|AAG39489.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643259|gb|AAG39490.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643261|gb|AAG39491.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643263|gb|AAG39492.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643265|gb|AAG39493.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643267|gb|AAG39494.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643269|gb|AAG39495.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643271|gb|AAG39496.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643273|gb|AAG39497.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643275|gb|AAG39498.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643277|gb|AAG39499.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643279|gb|AAG39500.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643281|gb|AAG39501.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643285|gb|AAG39503.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643287|gb|AAG39504.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643289|gb|AAG39505.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643291|gb|AAG39506.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643293|gb|AAG39507.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643295|gb|AAG39508.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643297|gb|AAG39509.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643299|gb|AAG39510.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643301|gb|AAG39511.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643303|gb|AAG39512.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643305|gb|AAG39513.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643307|gb|AAG39514.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643309|gb|AAG39515.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643313|gb|AAG39517.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643315|gb|AAG39518.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643319|gb|AAG39520.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643323|gb|AAG39522.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643331|gb|AAG39526.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643339|gb|AAG39530.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643341|gb|AAG39531.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643343|gb|AAG39532.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643345|gb|AAG39533.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643347|gb|AAG39534.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643349|gb|AAG39535.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643351|gb|AAG39536.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643353|gb|AAG39537.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643355|gb|AAG39538.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643357|gb|AAG39539.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643359|gb|AAG39540.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643365|gb|AAG39543.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643369|gb|AAG39545.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643373|gb|AAG39547.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643377|gb|AAG39549.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 41.2 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + A G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYSVSLAADPYPEAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120 >gi|157488887|gb|ABV57847.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 41.2 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|157488865|gb|ABV57836.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488867|gb|ABV57837.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488869|gb|ABV57838.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488871|gb|ABV57839.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488873|gb|ABV57840.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488877|gb|ABV57842.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488879|gb|ABV57843.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488881|gb|ABV57844.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488885|gb|ABV57846.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488891|gb|ABV57849.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488893|gb|ABV57850.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488895|gb|ABV57851.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488897|gb|ABV57852.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488899|gb|ABV57853.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488905|gb|ABV57856.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488909|gb|ABV57858.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488911|gb|ABV57859.1| NADH dehydrogenase subunit 6 [Sternula antillarum] gi|157488913|gb|ABV57860.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 41.2 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|86990345|ref|YP_492664.1| NADH dehydrogenase subunit 6 [Acanthaster planci] gi|86476012|dbj|BAE79177.1| NADH dehydrogenase subunit 6 [Acanthaster planci] Length = 162 Score = 41.2 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 8/159 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY + S LV +P + L+ V+ L LLG+ FVA++ +++Y+G Sbjct: 1 MVFYAVIVVMPFGSTLVFYSLSPYFGALGLVLVAVSGCFLCGLLGSSFVALVLVLIYMGG 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F++ + + L + S + + S LV Sbjct: 61 MLVVFVYSTAISAERYPAVSNLNEVLLLSGVGVVWAFVSFDPFLSFSLGGWSMTVESDLV 120 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 G +G L + GF+L ++++ A+V+ Sbjct: 121 GGGALYNALGGYL--------LVGGFVLFIALVVALVIT 151 >gi|118581619|ref|YP_902869.1| putative monovalent cation/H+ antiporter subunit A [Pelobacter propionicus DSM 2379] gi|118504329|gb|ABL00812.1| multisubunit sodium/proton antiporter, MrpA subunit [Pelobacter propionicus DSM 2379] Length = 767 Score = 41.2 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 50/113 (44%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L + + + + + T R+ + +V +L A ++++ GA +AM + ++I+ Sbjct: 602 WLTAAVILGGALMAATTRSRLAAVAALGTVGYGVALIYIIFGAPDLAMTQFCIETLSIIM 661 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 F L + + + + R L S IG L++ A + +F G+ Sbjct: 662 FVLVLYRLPRFTPLSSPLSRLRDLLVSLSIGCAMGLLVLMAVSRPMFPHIGDW 714 >gi|325126787|ref|YP_004285930.1| NADH dehydrogenase subunit 6 [Bucorvus leadbeateri] gi|304365515|gb|ADM26324.1| NADH dehydrogenase subunit 6 [Bucorvus leadbeateri] Length = 173 Score = 41.2 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG F+A++ +VY+G Sbjct: 2 AYFVLFLGLVFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFIALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVALAADPFPEAWGDWR 86 >gi|325126745|ref|YP_004285891.1| NADH dehydrogenase subunit 6 [Carduelis sinica] gi|324022961|gb|ADY15527.1| NADH dehydrogenase subunit 6 [Carduelis sinica] Length = 172 Score = 41.2 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +G ++V F++ + + + G ++ L++ + M+ Sbjct: 60 LGGMLVVFVYSVSLAADPYPESWASWGVVGYGLGMGLVVLVGLVIGGALGML 111 >gi|295065526|ref|YP_003587304.1| NADH dehydrogenase subunit 6 [Otis tarda] gi|223951409|gb|ACN29662.1| ND6 [Otis tarda] Length = 173 Score = 41.2 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ V G L LGA FV+++ +VY+G Sbjct: 2 TYFMFFLGVCFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLLSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPGAWGDWR 86 >gi|238550633|gb|ACR44481.1| NADH dehydrogenase subunit 6 [Perdix dauurica] Length = 173 Score = 41.2 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 45/107 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++S V + +P Y V L+ A V G + LG F+++ +VY+G Sbjct: 2 TYFVIFLGVSFVLSVLAVASNPSPYYGVVGLVLAAVAGCGWLVNLGVSFISLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 ++V F++ + + A + G F+ ++ I+ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVIGYGLGFVLVVCVGAILGGLT 108 >gi|213136317|gb|ACJ43854.1| NADH dehydrogenase subunit 6 [Salamandrina terdigitata] Length = 172 Score = 41.2 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 1/129 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF II V + +P ++ F LI A V+ L + G F++++ +++Y+G ++V Sbjct: 7 LFMVGVIIGLIAVASNPSPYFAAFGLILASVSGCCLLVDFGVSFLSLVLMLIYLGGMMVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F + + A ++ +F+G++ + S + + S L G Sbjct: 67 FAYSASLAAEPYPEAWGSLSVVVYVCIYFVGLMFCGYLFGFSFSIWLVFSEDFSNLHTIG 126 Query: 129 NNVENIGKV 137 + +G++ Sbjct: 127 GDWGGVGEI 135 >gi|18138256|ref|NP_542467.1|ND6_15900 NADH dehydrogenase subunit 6 [Lepidosiren paradoxa] gi|18001021|gb|AAL55255.1|AF302934_13 NADH dehydrogenase subunit 6 [Lepidosiren paradoxa] Length = 169 Score = 41.2 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 43/111 (38%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + IIS V + +P+++ L+ G+ + LG F++++ ++Y+G + Sbjct: 4 IFVMLLVGFIISLIGVASNPSPMFAALGLVCGAAFGCGILVWLGGSFLSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +V F + + + + A G+ + V S Sbjct: 64 LVVFAYSVALSSEEYPEAWMDWPVMMNFIMLGGVTVWWWVFLEVGVDVMSG 114 >gi|11643311|gb|AAG39516.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643317|gb|AAG39519.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643321|gb|AAG39521.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643325|gb|AAG39523.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643327|gb|AAG39524.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643329|gb|AAG39525.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] gi|11643333|gb|AAG39527.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] Length = 172 Score = 41.2 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + E G +G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGMVIMVGAVVSGVFEVLVDGGTVNNV 120 >gi|219524162|ref|YP_002456309.1| NADH dehydrogenase subunit 6 [Accipiter gentilis] gi|218783311|dbj|BAH03680.1| NADH dehydrogenase subunit 6 [Accipiter gentilis] Length = 172 Score = 41.2 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + M + + Sbjct: 62 GMLVVFVYSVCMAADPFPESWGDWR 86 >gi|14141890|ref|NP_115440.1| NADH dehydrogenase subunit 6 [Dromaius novaehollandiae] gi|14039565|gb|AAK53305.1|AF338711_13 NADH dehydrogenase subunit VI [Dromaius novaehollandiae] Length = 173 Score = 41.2 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + I+ + V + +P Y V L+ V G L LG F++++ +VY+G Sbjct: 2 TYFIFFLGLCFILGALAVASNPSPYYGVLGLVLGSVVGCGWLLSLGVSFISLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVSLAADPFPETWGDWR 86 >gi|19481568|gb|AAL88856.1|AF407123_1 NADH dehydrogenase subunit 6 [Amblyospiza albifrons] Length = 159 Score = 40.8 bits (95), Expect = 0.093, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVVAAIAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|157488883|gb|ABV57845.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 40.8 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 37/83 (44%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G + Sbjct: 4 FVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F++ + + A + Sbjct: 64 LVVFVYSVSLAADPFPEAWGDWR 86 >gi|9230588|gb|AAF85918.1|AF171655_2 NADH dehydrogenase subunit 6 [Loxia leucoptera leucoptera] gi|9230606|gb|AAF85930.1|AF171661_2 NADH dehydrogenase subunit 6 [Loxia leucoptera bifasciata] Length = 172 Score = 40.8 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 4/111 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +G ++V F++ + + E G +G F L + + + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVSWGVVGYGFGMGLVVLVGLVMGGML 108 >gi|1171829|sp|P43189|NU6M_AETCR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394654|emb|CAA52133.1| NADH dehydrogenase subunit 6 [Aethia cristatella] Length = 173 Score = 40.8 bits (95), Expect = 0.096, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ S V + +P Y V L+ A + G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGSLAVASNPSPYYGVVGLVLASIAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A G F+ +L LIV Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWGVVGYGVGFVAVLMVGLIV 104 >gi|280978306|ref|YP_003345241.1| NADH dehydrogenase subunit 6 [Tragopan caboti] gi|269975405|gb|ACZ55627.1| NADH dehydrogenase subunit 6 [Tragopan caboti] Length = 173 Score = 40.8 bits (95), Expect = 0.096, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 44/102 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ + V + +P Y V L+ A V G + LG F+++ +VY+G Sbjct: 2 TYFVIFLGICFMLGALAVASNPSPYYGVVGLVLASVVGCGWLVNLGVSFISLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 ++V F++ + + A + G F+ ++ + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCMGAL 103 >gi|5834908|ref|NP_006976.1|ND6_10181 NADH dehydrogenase subunit 6 [Strongylocentrotus purpuratus] gi|128823|sp|P15553|NU6M_STRPU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|13676|emb|CAA31161.1| NADH dehydrogenase (ND6) subunit 6 [Strongylocentrotus purpuratus] Length = 165 Score = 40.8 bits (95), Expect = 0.096, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 8/157 (5%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+ + + S LV +P YS L+ V + + LG+ FV ++ +VY+G ++V Sbjct: 4 YVTLIVMLFGSTLVFYSLSPYYSALGLVVFSVPGSFVLSFLGSSFVPIVLFLVYIGGMLV 63 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F ++ R +G++ +F F + G Sbjct: 64 VF-------PYSSAISPERFPSVNNLGEVVGLVFLFSSWVFMSFDNFQDLKNIFHCFVSG 116 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 ++ Y + + F+LL++++GA+++ Sbjct: 117 ESLVG-SNTFYNSGGVLVILGVFVLLVALVGALIISR 152 >gi|108793363|ref|YP_637087.1| NADH dehydrogenase subunit 6 [Eudyptes chrysocome] gi|108755468|dbj|BAE95704.1| NADH dehydrogenase subunit 6 [Eudyptes chrysocome] Length = 172 Score = 40.8 bits (95), Expect = 0.097, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG FVA++ +VY+G ++V Sbjct: 7 FLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVALVLFMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 F++ + + V G + +LA L V F S V Sbjct: 67 FVYSVALAADPFPVGWGEWPVVVYGVGLVLVLAIGLGVGGFEGWKFGVNTVDSGGVVP 124 >gi|215260094|ref|YP_002327452.1| NADH dehydrogenase subunit 6 [Scarus ghobban] gi|213138614|gb|ACJ45007.1| NADH dehydrogenase subunit 6 [Scarus ghobban] Length = 173 Score = 40.8 bits (95), Expect = 0.099, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S LF+ ++ V + +P Y+ +L+ GL G F+A++ ++Y+G Sbjct: 2 SFLVILFTVGMVLGLIGVASNPSPYYAALALVVVAWAGCGLLTSYGGSFLALVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + A R G + + + + Sbjct: 62 GMLVVFAYSSALAAEIYPEAWLRAGPGVAMYLYTFAVVGATLTYLYYW 109 >gi|1304709|gb|AAA99076.1| NADH dehydrogenase subunit 6 [Grus antigone gillae] Length = 173 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|5835959|ref|NP_008724.1|ND6_15092 NADH dehydrogenase subunit 6 [Falco peregrinus] gi|3600005|gb|AAC35510.1| NADH dehydrogenase subunit VI [Falco peregrinus] Length = 175 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MVM F+ + + V + +P Y V L+ V G + LG F++++ + Sbjct: 1 MVMTYFVFF-LGVCFVFGALAVASNPSPYYGVVGLVLGSVVGCGWLMSLGVSFISLVLFM 59 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY+G ++V F++ + + A + G I +L ++ S + G Sbjct: 60 VYLGGMLVVFVYSVALAADPFPEAWGNWRVVGCGVGLILLLFVGAVIGGSVGYLSPGVGT 119 Query: 121 L 121 + Sbjct: 120 V 120 >gi|156142536|gb|ABU52033.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142538|gb|ABU52034.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVA 84 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEA 75 >gi|19481582|gb|AAL88863.1|AF407130_1 NADH dehydrogenase subunit 6 [Junco hyemalis] Length = 159 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLIMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F++ + + A G F +G++ +V + EG ++ Sbjct: 60 LGGMLVVFVYSVSLAAEPYPEAWGSWNVVGYG-FGMGLVVMVGLVMGGVLGLLVDEGTVN 118 >gi|19481562|gb|AAL88853.1|AF407120_1 NADH dehydrogenase subunit 6 [Sporopipes frontalis] Length = 159 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ + + G + LG F++++ ++VY Sbjct: 2 MEFVLF--LGLCFVFGGLAVASNPSPYYGVVGLVVSAIAGCGWLVSLGVSFMSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|9230603|gb|AAF85928.1|AF171660_2 NADH dehydrogenase subunit 6 [Loxia leucoptera megaplaga] Length = 172 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 5/121 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + E G +G F +G++ +V F + E + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPESWVSWGVVGYGFGMGLVVLVGLVMGGMFGLLVEESTV 117 Query: 122 S 122 + Sbjct: 118 N 118 >gi|1171842|sp|P43199|NU6M_CYCPS RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394672|emb|CAA52130.1| NADH dehydrogenase subunit 6 [Cyclorrhynchus psittacula] Length = 173 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A G F+ +L A LIV S Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWGVVGYGVGFVVVLVAGLIVGGS 107 >gi|218157328|ref|YP_002364480.1| NADH dehydrogenase subunit 6 [Todiramphus sanctus vagans] gi|166093123|gb|ABY82554.1| NADH dehydrogenase subunit 6 [Todiramphus sanctus vagans] Length = 173 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + F I+ V + +P Y V L+ A V G L LG FVA++ +VY+G + Sbjct: 4 FMFFLGFCFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLNLGVSFVALVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F++ + + A + Sbjct: 64 LVVFVYSVSLAADPFPEAWADWR 86 >gi|16797942|gb|AAL29223.1| NADH dehydrogenase subunit 6 [Numenius phaeopus] Length = 173 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLLLGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|296099596|gb|ADG95203.1| NADH dehydrogenase subunit 6 [Polypterus endlicherii congicus] Length = 167 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS +IS V + +P ++ F L+ G+ + G F++MI ++Y+G Sbjct: 2 VLMVVFSMFFLISLIAVASNPSPYFAAFGLMIGAGAGCGMLVQCGMTFLSMILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + A + ++ ++ +V NF VF + Sbjct: 62 MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVLLIMGMWVVFVGNFEVFDS 113 >gi|108793530|ref|YP_637073.1| NADH dehydrogenase subunit 6 [Phalanger interpositus] gi|94481227|dbj|BAE94030.1| NADH dehydrogenase subunit 6 [Phalanger vestitus] Length = 167 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 49/115 (42%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + +LFSF+ I+ + +PIY SL+ + + + + LG F+ ++ +VY Sbjct: 1 MGMMVVFLFSFLLILGFVAFASKPSPIYGGLSLVVSGGFGSAIVVSLGNTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M + + F F ++ + V +A Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNMVAFSMLLFTLLVELVWYFMSGEIEVSTA 115 >gi|1304734|gb|AAA99091.1| NADH dehydrogenase subunit 6 [Grus vipio] gi|224504148|gb|ACN53721.1| NADH dehydrogenase subunit 6 [Grus vipio] Length = 173 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 2/109 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMVFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 ++V F++ + + A + +G +L + F+ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR--VVGYIAGLVLVLVMGAVVGGFV 108 >gi|270155274|gb|ACZ62672.1| NADH dehydrogenase subunit 6 [Pleuragramma antarcticum] Length = 174 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YLF ++ V + P Y+ L+ GL L LG F ++ ++Y+G ++V Sbjct: 6 YLFMLGMVVGMAAVASNPPPFYAALGLVVVAAMGCGLILSLGGTFSCLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN---FMVFSAEGELSRLV 125 F + + + + + ++G+ + S+ + A GE V Sbjct: 66 VFAYSVALCAGAPSTGLGEESVLKCMAGYLGVTGVVGFLQGSSEGPAFWWFAGGEWEMAV 125 Query: 126 FKG 128 +G Sbjct: 126 MQG 128 >gi|5835973|ref|NP_008737.1|ND6_15093 NADH dehydrogenase subunit 6 [Smithornis sharpei] gi|3600011|gb|AAC35514.1| NADH dehydrogenase subunit VI [Smithornis sharpei] Length = 173 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F L ++ V + +P Y V L+ A V G + LG FV+++ +VY+G + Sbjct: 4 FLLLLGMCFVLGGLAVASNPSPYYGVVGLVMASVVGCGWLMSLGLSFVSLVLFLVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F++ + + A + Sbjct: 64 LVVFVYSVSLAADPFPEAWGDWR 86 >gi|272886790|gb|ACZ96470.1| NADH dehydrogenase subunit 6 [Didymium iridis] gi|272886792|gb|ACZ96471.1| NADH dehydrogenase subunit 6 [Didymium iridis] Length = 167 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 15/144 (10%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +FF L F+ I N I+++ +LI F+N A L + F+ ++ Sbjct: 1 MTLIFIFFALLLFITI--------TPNAIHALLALILLFINFAILLFITETSFLGFAYIL 52 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY+GA+ V FL+II++L + R L IG ++ + + ++ Sbjct: 53 VYIGAICVLFLYIILLLHLRSYSLMQRSNALILIGLLIGFISIFSYINYISENLYIDTAA 112 Query: 121 LSRLVFKGNNVENIGKVLYTQYAY 144 + + L+T Y + Sbjct: 113 YNVFLLSD-------LQLFTSYLF 129 >gi|215399179|ref|YP_002332307.1| NADH dehydrogenase subunit 6 [Podarcis siculus] gi|62900879|gb|AAY18767.1| NADH dehydrogenase subunit 6 [Podarcis siculus] gi|213983314|gb|ACJ54996.1| NADH dehydrogenase subunit 6 [Podarcis siculus] Length = 171 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 51/104 (49%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F ++S V + +P + +L+ + G+ +LLG+ FV+++ L++Y+G ++V Sbjct: 7 FFMVCLVVSLIGVASNPSPNFGAGNLVVSASVGCGILILLGSSFVSLVLLLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 F + + + A K G+ G + + +L ++ F+ Sbjct: 67 FAYSVALASDPFPEAWG-KVGGYFGGYIVLVLFLVVMFSEGGFI 109 >gi|148292240|dbj|BAF62945.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|150372639|dbj|BAF66104.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|150372653|dbj|BAF66117.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] Length = 175 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLAC 105 >gi|22530886|gb|AAM96950.1| NADH dehydrogenase subunit 6 [Schwanniomyces occidentalis] Length = 146 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 9/132 (6%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F++ ISS L + + P+ S+ + F + A G + M+ +++YVGA+ + FLF Sbjct: 3 FISGISSLLAIGMLTPVQSMLFTMMLFTSTAISLYSQGYVLMGMLYMLMYVGAMAMLFLF 62 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 ++ +L +D +G + + +L L+ + + E+S + N + Sbjct: 63 MLSLLKMD------YTVQGTVSPLMMTLLTMSLMPLDMTYETYGMMTEVSNV---WNELV 113 Query: 133 NIGKVLYTQYAY 144 +G LYT+YA Sbjct: 114 VVGNQLYTEYAV 125 >gi|29569562|gb|AAO85249.1| NADH dehydrogenase subunit 6 [Buteo polyosoma poecilochrous] Length = 172 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 45/106 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGAVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G+ + +L +I + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWRVLGYGAGMVLVLVVGVIAGGA 107 >gi|1304712|gb|AAA99078.1| NADH dehydrogenase subunit 6 [Grus antigone gillae] Length = 173 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|108793419|ref|YP_637009.1| NADH dehydrogenase subunit 6 [Nipponia nippon] gi|84579397|dbj|BAE72088.1| NADH dehydrogenase subunit 6 [Nipponia nippon] Length = 173 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 44/107 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F I+ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVVFLGVGFILGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 ++V F++ + + + G F+ +L +V Sbjct: 62 GMLVVFVYSVALAADLFPETWGDWRVVGYGVGFVSVLWVGAVVGGLA 108 >gi|115494717|ref|YP_778719.1| NADH dehydrogenase subunit 6 [Arctocephalus pusillus] gi|115344855|emb|CAJ56908.1| NADH dehydrogenase subunit 6 [Arctocephalus pusillus] Length = 175 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLAC 105 >gi|257077085|ref|ZP_05571446.1| NADH dehydrogenase subunit J [Ferroplasma acidarmanus fer1] Length = 73 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 23/40 (57%) Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL 163 K ++ +IG +L++ Y P E+ +L+ S+IG + + Sbjct: 28 FAIKPQDITDIGTLLFSTYIVPFELLSVLLVASIIGVMYI 67 >gi|66276071|ref|YP_238215.1| NADH dehydrogenase subunit 6 [Larus dominicanus] gi|34223678|gb|AAQ63032.1| NADH dehydrogenase subunit 6 [Larus dominicanus] Length = 173 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|9230591|gb|AAF85920.1|AF171656_2 NADH dehydrogenase subunit 6 [Loxia scotica] Length = 172 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +G ++V F++ + + A+P + L L+V M Sbjct: 60 LGGMLVVFVYSVSL------AADPYPESWVSWGVVGYGLGMGLVVLVGLVM 104 >gi|20330601|ref|NP_620339.1| NADH dehydrogenase subunit 6 [Haematopus ater] gi|20270025|gb|AAL74044.1| NADH dehydrogenase subunit 6 [Haematopus ater] Length = 173 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVFFLGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVA 84 ++V F++ + + A Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81 >gi|312233220|ref|YP_004021442.1| NADH dehydrogenase subunit 6 [Anhinga rufa] gi|312233221|ref|YP_004021443.1| NADH dehydrogenase subunit 6 [Anhinga rufa] Length = 173 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 AYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|156142554|gb|ABU52042.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142556|gb|ABU52043.1| NADH dehydrogenase subunit 6 [Coereba flaveola] gi|156142582|gb|ABU52056.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVA 84 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEA 75 >gi|190349481|ref|YP_001974552.1| NADH dehydrogenase subunit 6 [Platalea minor] gi|134268955|gb|ABO68978.1| NADH dehydrogenase subunit 6 [Platalea minor] gi|283131464|dbj|BAI63462.1| NADH dehydrogenase subunit 6 [Platalea minor] gi|283131465|dbj|BAI63463.1| NADH dehydrogenase subunit 6 [Platalea minor] gi|283131468|dbj|BAI63465.1| NADH dehydrogenase subunit 6 [Platalea minor] gi|283131469|dbj|BAI63466.1| NADH dehydrogenase subunit 6 [Platalea minor] Length = 173 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 47/103 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVVFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G+ F+ +L +++ Sbjct: 62 GMLVVFVYSVALAADLFPEAWGDWRVMGYGAGFVLVLIVGVVM 104 >gi|19481556|gb|AAL88850.1|AF407117_1 NADH dehydrogenase subunit 6 [Euplectes macrourus] Length = 159 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFVLGGLAVASNPSPYYGAAGLVVAAIAGGGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|325126773|ref|YP_004285917.1| NADH dehydrogenase subunit 6 [Carduelis spinus] gi|324022975|gb|ADY15540.1| NADH dehydrogenase subunit 6 [Carduelis spinus] Length = 172 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|148292226|dbj|BAF62932.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] Length = 175 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLAC 105 >gi|5835471|ref|NP_008405.1|ND6_13475 NADH dehydrogenase subunit 6 [Balanoglossus carnosus] gi|3065681|gb|AAD11944.1| NADH dehydrogenase subunit 6 [Balanoglossus carnosus] Length = 160 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 2/104 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + SF+ + LV R+P +S ++ A V +G ++ G F+ +I ++Y+G ++V Sbjct: 5 VLSFLTVGGGILVFISRSPYFSALGVVGAVVGFSGFLIMSGGVFLGLILFLMYLGGMLV- 63 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +F + + G L + ++ Sbjct: 64 -VFAYSAALASDRYPDVGWSKALPLVVIFGGLVPYFVFEGGGWV 106 >gi|1304706|gb|AAA99074.1| NADH dehydrogenase subunit 6 [Grus antigone gillae] gi|1304720|gb|AAA99083.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei] gi|1304725|gb|AAA99086.1| NADH dehydrogenase subunit 6 [Grus antigone antigone] gi|1304728|gb|AAA99088.1| NADH dehydrogenase subunit 6 [Grus antigone antigone] gi|224504176|gb|ACN53747.1| NADH dehydrogenase subunit 6 [Grus antigone] Length = 173 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|326536088|ref|YP_004300519.1| NADH dehydrogenase subunit 6 [Odocoileus virginianus] gi|309399264|gb|ADO78899.1| NADH dehydrogenase subunit 6 [Odocoileus virginianus] Length = 175 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + + + + LG+F G+L ++VC Sbjct: 61 LGGMMVVFGYT-TAMATEQYPEMWVSNKTVLGAFVTGLLMEIMMVC 105 >gi|238550577|gb|ACR44429.1| NADH dehydrogenase subunit 6 [Tragopan temminckii] Length = 173 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 44/102 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ + V + +P Y V L+ A V G + LG F+++ +VY+G Sbjct: 2 TYFVIFLGICFMLGALAVASNPSPYYGVVGLVLASVVGCGWLVNLGISFISLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 ++V F++ + + A + G F+ ++ + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCMGAL 103 >gi|19481578|gb|AAL88861.1|AF407128_1 NADH dehydrogenase subunit 6 [Passer domesticus] Length = 159 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F + + + Sbjct: 60 LGGMLVVFAYSVSL 73 >gi|1171851|sp|P43207|NU6M_URIAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|262835|gb|AAB24770.1| NADH dehydrogenase subunit 6 [Uria aalge] gi|394690|emb|CAA52118.1| NADH dehydrogenase subunit 6 [Uria aalge] gi|21104310|emb|CAC80353.1| NADH dehydrogenase subunit 6 [Uria aalge] Length = 172 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|1171844|sp|P43201|NU6M_FRACR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394676|emb|CAA52135.1| NADH dehydrogenase subunit 6 [Fratercula corniculata] Length = 173 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + S ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVFFLSLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVALAADPFPEAWGDWR 86 >gi|730211|sp|P41322|NU6M_LARCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394678|emb|CAA52137.1| NADH dehydrogenase subunit 6 [Larus canus] Length = 173 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVVASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97 ++V F++ + + A + G+ F Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGAGF 94 >gi|313662241|gb|ADR72186.1| NADH dehydrogenase subunit 6 [Polytomella sp. SAG 63-9] Length = 116 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 14/130 (10%) Query: 33 FSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92 I ++N LLG EF+A+I +VYVGA+ V FLF++M++ + Sbjct: 1 MYSILLYINVQLFLTLLGFEFMALIYALVYVGALAVLFLFVVMLIRVQAAAFLN------ 54 Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152 L+ + FS + VF + G LYT +A I+ Sbjct: 55 --------LSTNITFWLLIIFDFSYAYSNLQFVFTSECLVCFGASLYTSFADLTIINSIA 106 Query: 153 LLLSMIGAIV 162 L ++ G++V Sbjct: 107 LTAALFGSLV 116 >gi|9230585|gb|AAF85916.1|AF171654_2 NADH dehydrogenase subunit 6 [Loxia curvirostra japonica] Length = 172 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +G ++V F++ + + A+P + L L+V M Sbjct: 60 LGGMLVVFVYSVSL------AADPYPESWVSWGVVGYGLGMGLVVLVGLVM 104 >gi|1304717|gb|AAA99081.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei] Length = 173 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|1304714|gb|AAA99079.1| NADH dehydrogenase subunit 6 [Grus antigone sharpei] gi|1304722|gb|AAA99084.1| NADH dehydrogenase subunit 6 [Grus antigone antigone] Length = 173 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|16797921|gb|AAL29213.1| NADH dehydrogenase subunit 6 [Xenus cinereus] Length = 173 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 42/94 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLLLGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A + G FI Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFI 95 >gi|53793992|ref|YP_112475.1| NADH dehydrogenase subunit 6 [Chlorurus sordidus] gi|53749086|dbj|BAD52429.1| NADH dehydrogenase subunit 6 [Chlorurus sordidus] Length = 173 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 2/133 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S LF+ ++ V + +P ++ +L+ GL G F+A++ ++Y+G Sbjct: 2 SFLVVLFTVGLVLGLIGVASNPSPYFAALALVVVAWAGCGLLTSYGGSFLALVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF--MVFSAEGELS 122 ++V F + + A R G + +A ++ ++ + +G + Sbjct: 62 GMLVVFAYSSALAAEIYPEAWLRAGPGVAMYLYAFAVAGATLIYFYHWEGGDLALDGVVD 121 Query: 123 RLVFKGNNVENIG 135 L +VE + Sbjct: 122 WLSPFAGDVEGVA 134 >gi|301503285|gb|ADK76205.1| NADH dehydrogenase subunit 6 [Brotogeris cyanoptera] Length = 167 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 46/115 (40%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++++ LV + +P Y L F V G + LGA FVA+ +VY+G Sbjct: 2 TYFVLALGVGFVLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 ++V F++ + + + + + A ++ V + G Sbjct: 62 GMLVVFVYSVSLAADPFPQVWGGWRAVVYAFVVLLAVGAGMVGWGLGVQVVDSVG 116 >gi|5835735|ref|NP_008548.1|ND6_15050 NADH dehydrogenase subunit 6 [Corvus frugilegus] gi|4454087|emb|CAA77207.1| NADH dehydrogenase subunit 6 [Corvus frugilegus] Length = 173 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F F ++ V + +P Y V L+ A + G L +G FV+++ ++VY Sbjct: 2 MNFVLFMTLCF--VLGGLAVASNPSPYYGVVGLVVASIAGCGWLLSMGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +G ++V F++ + + + + Sbjct: 60 LGGMLVVFVYSVSLAADPYPESWGDWR 86 >gi|327492833|ref|YP_004347715.1| NADH dehydrogenase subunit 6 [Tylerius spinosissimus] gi|327392656|dbj|BAK10079.1| NADH dehydrogenase subunit 6 [Tylerius spinosissimus] Length = 173 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 9/114 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 + +L F L + + +VV NP Y VF+L+ + G +L G F++++ L+ Sbjct: 2 LYALVFLLLGMLVV----MVVLSTNPAPFYGVFNLVLVALLCCGAIILHGGTFLSLVLLL 57 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +Y+G ++V F++ + A + FF G + L V + ++ Sbjct: 58 IYMGGMLVVFIYSSALSADKDPEAPTG---WQVSLFFFGYFSFVLGVLGMSTVL 108 >gi|9230582|gb|AAF85914.1|AF171653_2 NADH dehydrogenase subunit 6 [Loxia curvirostra luzonensis] gi|9230594|gb|AAF85922.1|AF171657_2 NADH dehydrogenase subunit 6 [Loxia curvirostra curvirostra] gi|9230615|gb|AAF85936.1|AF171664_2 NADH dehydrogenase subunit 6 [Loxia pytyopsittacus] Length = 172 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +G ++V F++ + + A+P + L L+V M Sbjct: 60 LGGMLVVFVYSVSL------AADPYPESWVSWGVVGYGLGMGLVVLVGLVM 104 >gi|156142532|gb|ABU52031.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 166 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 37/78 (47%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ + V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGWAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPR 87 F++ + + A Sbjct: 61 FVYSVSLAAEPYPEAWGN 78 >gi|29569550|gb|AAO85243.1| NADH dehydrogenase subunit 6 [Buteo lineatus alleni] gi|29569552|gb|AAO85244.1| NADH dehydrogenase subunit 6 [Buteo lineatus elegans] gi|29569554|gb|AAO85245.1| NADH dehydrogenase subunit 6 [Buteo lineatus lineatus] gi|281308286|gb|ADA58291.1| NADH dehydrogenase subunit 6 [Buteo lineatus] gi|281308288|gb|ADA58292.1| NADH dehydrogenase subunit 6 [Buteo lineatus] Length = 172 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ + G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|19481546|gb|AAL88845.1|AF407112_1 NADH dehydrogenase subunit 6 [Lonchura cucullata] Length = 158 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLGVASNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|11643335|gb|AAG39528.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + E G +G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYWVSLAA--DPYPEAWGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120 >gi|37596487|gb|AAQ95004.1| NADH dehydrogenase subunit 6 [Euplectes ardens] Length = 159 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFVLGGLAVASNPSPYYGAAGLVVAAIAGGGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|164449790|ref|YP_001648844.1| NADH dehydrogenase subunit 6 [Sylvia crassirostris] gi|164414720|emb|CAP10146.1| NADH dehydrogenase subunit 6 [Sylvia crassirostris] Length = 172 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 1/113 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S ++ + V + +P Y V L+ A V G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLFFVLGGWAVASNPSPYYGVVGLVVASVAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 +V F++ + + D E G+ + I+ ++ F+V + Sbjct: 64 LVVFVYSVSLAADPYPEGWSDWGVVGYGFGMGLVIVIGAILGEVYGFLVDAGT 116 >gi|9230579|gb|AAF85912.1|AF171652_2 NADH dehydrogenase subunit 6 [Loxia curvirostra himalayensis] Length = 172 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG F++++ ++VY Sbjct: 2 MEFVLF--LGVCFALGGLTVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +G ++V F++ + + A+P + L L+V M Sbjct: 60 LGGMLVVFVYSVSL------AADPYPESWVSWGVVGYGLGMGLVVLVGLVM 104 >gi|9230597|gb|AAF85924.1|AF171658_2 NADH dehydrogenase subunit 6 [Loxia curvirostra minor] gi|9230609|gb|AAF85932.1|AF171662_2 NADH dehydrogenase subunit 6 [Loxia curvirostra pusilla] gi|9230612|gb|AAF85934.1|AF171663_2 NADH dehydrogenase subunit 6 [Loxia curvirostra stricklandi] Length = 172 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFALGGLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +G ++V F++ + + A+P + L L+V M Sbjct: 60 LGGMLVVFVYSVSL------AADPYPESWVSWGVVGYGLGMGLVVLVGLVM 104 >gi|126792870|gb|ABO27287.1| NADH dehydrogenase subunit 6 [Orthopsittaca manilata] Length = 170 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G Sbjct: 2 TYFLVFLGVGFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 ++V F++ + + A G + + L+ F+V+ +G Sbjct: 62 GMLVVFVYSVSLAADPFPQA--------WGGWQVAGYVLGLVPVGVGFVVWGWDG 108 >gi|5081455|gb|AAD39390.1|AF123910_1 NADH dehydrogenase subunit 6 [Grus japonensis] gi|224504078|gb|ACN53656.1| NADH dehydrogenase subunit 6 [Grus japonensis] Length = 173 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 3/102 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGMCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 ++V F++ + + A + + + +G++ ++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR---VVGYIVGLVLVLIM 100 >gi|18767660|ref|NP_572026.1|ND6_15950 NADH dehydrogenase subunit 6 [Coturnix japonica] gi|37154580|sp|P24981|NU6M_COTJA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|15208283|dbj|BAB62927.1| NADH dehydrogenase subunit 6 [Coturnix japonica] Length = 173 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 45/101 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ + V + +P Y V L+ A V G + LG FV+++ ++Y+G Sbjct: 2 TYFVIFLGVCFMLGTLAVASNPSPYYGVVGLVLASVVGCGWLVNLGVSFVSLVLFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 ++V F++ + + A + G F+ ++ + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWRVMGYGLGFVLVVCMGM 102 >gi|238908466|ref|YP_002929450.1| NADH dehydrogenase subunit 6 [Platalea leucorodia] gi|238626030|gb|ACR48312.1| NADH dehydrogenase subunit 6 [Platalea leucorodia] Length = 173 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 46/103 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVVFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + + G+ F+ +L +++ Sbjct: 62 GMLVVFVYSVALAADLFPETWGDWRVMGYGAGFVLVLIVGVVM 104 >gi|327492763|ref|YP_004347650.1| NADH dehydrogenase subunit 6 [Marilyna darwinii] gi|327392628|dbj|BAK10053.1| NADH dehydrogenase subunit 6 [Marilyna darwinii] Length = 172 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + S ++ L+ +P + +L+ + + G+ +L G F++++ L++Y+G ++V Sbjct: 7 MLSLGIMVGMILLALNPSPFFGSLNLVLLVLYSCGILILYGGSFLSLVLLMIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102 F++ L D + P+ LG + +L Sbjct: 67 FVYS-SALSADKDPEMPKSISFILGLGWYFLLV 98 >gi|299889170|dbj|BAJ10291.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889171|dbj|BAJ10292.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889174|dbj|BAJ10294.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889175|dbj|BAJ10295.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889178|dbj|BAJ10297.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889179|dbj|BAJ10298.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889182|dbj|BAJ10300.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] gi|299889183|dbj|BAJ10301.1| NADH dehydrogenase subunit 6 [Phoebastria albatrus] Length = 175 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGSWR 86 >gi|302201536|gb|ADL09097.1| NADH dehydrogenase subunit 6 [Crotophaga ani] Length = 173 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVFFLGVCFMLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G + ++ ++ + Sbjct: 62 GMLVVFVYSVSLAAEPFPEAWGDWRVLGYGVGLLLVIVFGVVFGGA 107 >gi|299889198|dbj|BAJ10312.1| NADH dehydrogenase subunit 6 [Phoebastria nigripes] gi|299889199|dbj|BAJ10313.1| NADH dehydrogenase subunit 6 [Phoebastria nigripes] Length = 175 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGSWR 86 >gi|229822296|ref|YP_002883822.1| NADH dehydrogenase (quinone) [Beutenbergia cavernae DSM 12333] gi|229568209|gb|ACQ82060.1| NADH dehydrogenase (quinone) [Beutenbergia cavernae DSM 12333] Length = 999 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 3/107 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + I+ + L R + +V L A LF L GA +A+ ++V I Sbjct: 596 VVGVIVILGAILAARSRRRMKAVLLLGACGYGVAVLFELQGAPDLALTQVLV---ETITL 652 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 +F++++ + + +G+L + + + Sbjct: 653 VVFVLVLRRLPPYFSNRPLAASRWWRAALGVLVGAFFAFLALIIPTA 699 >gi|29569578|gb|AAO85257.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis] gi|76009046|gb|ABA38985.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis] gi|76009052|gb|ABA38988.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis] gi|281308292|gb|ADA58294.1| NADH dehydrogenase subunit 6 [Buteogallus meridionalis] Length = 172 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVMGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|189095499|ref|YP_001936605.1| NADH dehydrogenase subunit 6 [Phasianus versicolor] gi|171702217|dbj|BAG16247.1| NADH dehydrogenase subunit 6 [Phasianus versicolor] Length = 173 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 45/105 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG F++++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++V F++ + + A + G F+ ++ + + Sbjct: 62 GMLVVFVYSVSLAADPYPQAWGDWRVVGYGLGFVLVVCVGVFLAG 106 >gi|1171843|sp|P43200|NU6M_FRAAR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394674|emb|CAA52134.1| NADH dehydrogenase subunit 6 [Fratercula arctica] Length = 173 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + S ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVFFLSLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVALAADPFPEAWGDWR 86 >gi|20330587|ref|NP_620326.1| NADH dehydrogenase subunit 6 [Arenaria interpres] gi|20270011|gb|AAL74031.1| NADH dehydrogenase subunit 6 [Arenaria interpres] Length = 173 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 46/107 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +I F+ + + A + G F+ ++ + ++V Sbjct: 62 GMISVFVSSVSLAADPFPEAWGDWRVVGYGVGFMLVVISGMVVGGIG 108 >gi|238550605|gb|ACR44455.1| NADH dehydrogenase subunit 6 [Pucrasia macrolopha] Length = 173 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVNLGVSFVSLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 ++V F++ + + A + +G +L + F+ F G ++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR--VVGYGLGFVLVVCMGAVLGGFVDFWKVGVIT 117 >gi|51101190|ref|YP_063358.1| NADH dehydrogenase subunit 6 [Acanthogobius hasta] gi|45685264|gb|AAS75391.1| NADH dehydrogenase subunit 6 [Acanthogobius hasta] Length = 173 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 1/103 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+F I+ V + +P ++ L+ G+ + GA F++++ ++Y+G ++V Sbjct: 6 YIFLLGLILGMVAVASNPSPFFAALGLVVVSGMGCGVLVGHGAPFLSLVLFLIYLGGMLV 65 Query: 69 FFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 F + + D E R+ GS + L + C Sbjct: 66 VFAYSAALAADPCPEGLGSREVAINAGSCVVASLVGGGLFCGL 108 >gi|161561793|ref|YP_001586270.1| NADH dehydrogenase subunit 6 [Tachybaptus novaehollandiae] gi|143024869|gb|ABO93134.1| NADH dehydrogenase subunit 6 [Tachybaptus novaehollandiae] Length = 173 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LGA FV+++ +VY+G Sbjct: 2 AYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|281308306|gb|ADA58301.1| NADH dehydrogenase subunit 6 [Buteo ridgwayi] gi|281308308|gb|ADA58302.1| NADH dehydrogenase subunit 6 [Buteo ridgwayi] Length = 172 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ + G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|5081431|gb|AAD39378.1|AF123898_1 NADH dehydrogenase subunit 6 [Grus paradisea] gi|224504036|gb|ACN53617.1| NADH dehydrogenase subunit 6 [Grus paradisea] Length = 173 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|16797944|gb|AAL29224.1| NADH dehydrogenase subunit 6 [Tringa nebularia] Length = 173 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 42/94 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLLLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A + G FI Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGVSFI 95 >gi|18077894|ref|NP_542241.1| NADH dehydrogenase subunit 6 [Tachyglossus aculeatus] gi|75054233|sp|Q8W9G2|NU6M_TACAC RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|17932776|emb|CAC88021.1| NADH dehydrogenase subunit 6 [Tachyglossus aculeatus] Length = 166 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 43/99 (43%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F YL S M ++S + +PIY SL+ + G+ + LG F+ +I +VY+G + Sbjct: 4 FIYLLSVMLVLSFMAFASNPSPIYGGLSLVLSGGVGCGIIVSLGGSFLGLIVFLVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 +V F + M + + +G+L Sbjct: 64 LVVFGYTAAMATEEYPETWVDYTVVLNLAIMVGMLGVVW 102 >gi|257053289|ref|YP_003131122.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Halorhabdus utahensis DSM 12940] gi|256692052|gb|ACV12389.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Halorhabdus utahensis DSM 12940] Length = 182 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 41/94 (43%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 + + V R+ + S+ SL A V A F L GA A+ VV G V V FL +I Sbjct: 12 TVGLALSAVAARDFLVSILSLSGASVALAVYFYLAGAPIAAVFEAVVAAGLVTVLFLLMI 71 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 + D + ++K +G +L L+V Sbjct: 72 SLTDAETATLIEQRKLPIVGLALGALLGVGLVVW 105 >gi|21449927|ref|NP_659247.1| NADH dehydrogenase subunit 6 [Arctocephalus forsteri] gi|115494829|ref|YP_778758.1| NADH dehydrogenase subunit 6 [Arctocephalus townsendi] gi|21397139|gb|AAM51818.1|AF513820_12 NADH dehydrogenase subunit 6 [Arctocephalus forsteri] gi|115344897|emb|CAJ56947.1| NADH dehydrogenase subunit 6 [Arctocephalus townsendi] Length = 175 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIAGLLSELLLAC 105 >gi|299889186|dbj|BAJ10303.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] gi|299889187|dbj|BAJ10304.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] gi|299889190|dbj|BAJ10306.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] gi|299889191|dbj|BAJ10307.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] gi|299889194|dbj|BAJ10309.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] gi|299889195|dbj|BAJ10310.1| NADH dehydrogenase subunit 6 [Phoebastria immutabilis] Length = 175 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGSWR 86 >gi|115494577|ref|YP_778706.1| NADH dehydrogenase subunit 6 [Zalophus californianus] gi|115344841|emb|CAJ56895.1| NADH dehydrogenase subunit 6 [Zalophus californianus] Length = 175 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIAGLLSELLLAC 105 >gi|19343500|ref|NP_597966.1| NADH dehydrogenase subunit 6 [Ursus americanus] gi|19110556|gb|AAL85166.1|AF303109_12 NADH dehydrogenase subunit 6 [Ursus americanus] Length = 175 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVVFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEA-WVSNKAVLGAFIVGLLSELLIAC 105 >gi|126792895|gb|ABO27303.1| NADH dehydrogenase subunit 6 [Cyanopsitta spixii] gi|126792898|gb|ABO27305.1| NADH dehydrogenase subunit 6 [Cyanopsitta spixii] Length = 170 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 45/108 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G Sbjct: 2 TYFLVFLGISLVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F++ + + F+ ++ + Sbjct: 62 GMLVVFVYSVSLAADPFPQVWGGWHAVGYVLGFVPAGVGFVVWGWGGW 109 >gi|164449776|ref|YP_001648818.1| NADH dehydrogenase subunit 6 [Acrocephalus scirpaceus] gi|164414692|emb|CAP10120.1| NADH dehydrogenase subunit 6 [Acrocephalus scirpaceus] Length = 172 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 2/105 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLGTCFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVGLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +V F++ + + E G +G F L + V Sbjct: 64 LVVFVYSVSLAA--DPYPEAWTDWGVVGYGFGMGLVIVVGVAMGG 106 >gi|331087471|gb|AEC53548.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus] Length = 173 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLGVCFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|164421068|ref|YP_001648434.1| NADH dehydrogenase subunit 6 [Odontobutis platycephala] gi|62902043|gb|AAY18982.1| NADH dehydrogenase subunit 6 [Odontobutis platycephala] Length = 173 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F S + I VV+ +P ++ L+ A GL + GA F++++ ++Y Sbjct: 1 MSYIMFIFMSGL-IGGLVGVVSNPSPYFAAVGLVVASGAGCGLLVGHGAPFLSLVLFLIY 59 Query: 63 VGAVIVFFLF 72 +G ++V F + Sbjct: 60 LGGMLVVFAY 69 >gi|115494661|ref|YP_778771.1| NADH dehydrogenase subunit 6 [Monachus schauinslandi] gi|115344911|emb|CAJ56960.1| NADH dehydrogenase subunit 6 [Monachus schauinslandi] Length = 175 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYVVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+VC Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIMGLLSELLLVC 105 >gi|5081429|gb|AAD39377.1|AF123897_1 NADH dehydrogenase subunit 6 [Grus virgo] gi|224504050|gb|ACN53630.1| NADH dehydrogenase subunit 6 [Grus virgo] Length = 173 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|313672492|ref|YP_004050603.1| multicomponent na+-h+ antiporter subunit a [Calditerrivibrio nitroreducens DSM 19672] gi|312939248|gb|ADR18440.1| putative multicomponent Na+-H+ antiporter subunit A [Calditerrivibrio nitroreducens DSM 19672] Length = 176 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + LF IIS+FL V ++ + S +L A L+ L A VA + V Sbjct: 1 MTVIIDILFLTFLIISAFLSVYFKDLLNSTIALSAYSFFVAVLWTTLNAVDVAFTEVAVG 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 G V L ++ +D +E + K R + + + L++ + F G ++ Sbjct: 61 AGVSTVLLLAVLSKID-RVEKNQVTKDRKIIALTVVFMTGYLLLLATQDMPNFGDPGWVT 119 Query: 123 RL 124 Sbjct: 120 NT 121 >gi|5081433|gb|AAD39379.1|AF123899_1 NADH dehydrogenase subunit 6 [Grus carunculatus] gi|224504022|gb|ACN53604.1| NADH dehydrogenase subunit 6 [Grus carunculatus] Length = 173 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|296099582|gb|ADG95190.1| NADH dehydrogenase subunit 6 [Polypterus bichir lapradei] Length = 167 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS + +IS V + +P ++ F L+ G+ + G F++MI ++Y+G Sbjct: 2 VLMVVFSVIFLISLIAVASNPSPYFAAFGLMVGAGAGCGMLMQCGMTFLSMILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + A + ++ ++ +V +F VF + Sbjct: 62 MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVLLIVGVWVVFVGDFEVFDS 113 >gi|5835510|ref|NP_007535.1|ND6_13719 NADH dehydrogenase subunit 6 [Rhea americana] gi|3282077|emb|CAA76512.1| nicotinamide adenine dinucleotide dehydrogenase subunit 6 [Rhea americana] Length = 174 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 40/87 (45%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S F + I+ + V + +P Y + L+ + G L LG F++++ +VY Sbjct: 1 MTSYFVFFMGVSFILGALAVASNPSPYYGLLGLVVGSLVGCGWLLSLGVSFISLVLFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +G ++V F++ + + A + Sbjct: 61 LGGMLVVFVYSVSLAADPFPEAWGDWR 87 >gi|161561807|ref|YP_001586121.1| NADH dehydrogenase subunit 6 [Phoenicopterus ruber roseus] gi|143024707|gb|ABO93082.1| NADH dehydrogenase subunit 6 [Phoenicopterus ruber roseus] Length = 173 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + Sbjct: 13 VLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVS 72 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 + E G +G +L + V A + Sbjct: 73 LAA--DPFPEAWGDWGVMGYAMGLLLVLGIGVVAGGLV 108 >gi|2459601|gb|AAB71752.1| NADH dehydrogenase subunit 6 [Chrysococcyx klaas] Length = 151 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 43/92 (46%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y V L+ A V G L LG FV+++ ++Y+G ++V F++ + Sbjct: 4 VLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMIYLGGMLVVFVYSVS 63 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 + A G I ++A +I+ Sbjct: 64 LAADPFPEAWGNWWVXGYGVGLILVVAVGVII 95 >gi|16357106|ref|NP_443474.1| NADH dehydrogenase subunit 6 [Ateleopus japonicus] gi|16266800|dbj|BAB69999.1| NADH dehydrogenase subunit 6 [Ateleopus japonicus] Length = 173 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + +LF F I+ V + P ++ L+ A G+ + G F++++ ++Y+G Sbjct: 2 TYLMFLFLFGLIVGLVGVASNPAPYFAALGLVLAAGCGCGILVGFGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + + E R G++ + +G+L S + Sbjct: 62 GMLVVFAYSAALAAEPFPETWGDRSVLGYVAIYLLGVLFFSTWFWGSWY 110 >gi|162951844|ref|YP_001621414.1| NADH dehydrogenase subunit 6 [Debaryomyces hansenii] gi|215275691|sp|A9RAG2|NU6M_DEBHA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|98283725|gb|ABF58063.1| NADH dehydrogenase subunit 6 [Debaryomyces hansenii] Length = 146 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 9/126 (7%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 +SS + + P+ S+ L+ FV+ A G + M+ + +YVGA+ + + Sbjct: 7 MSSLTAIGMLTPVQSMTCLMILFVSTAMCLYSQGFVLMGMLYVTMYVGAMAM------LF 60 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 L + + +G + + +LA L+ + + ++ + + + +G Sbjct: 61 LFMLSLLKMEYTPQGTITPLMVTLLAMCLMPLDITYETYGMVTQMENVTDE---LVMVGN 117 Query: 137 VLYTQY 142 LYT+Y Sbjct: 118 QLYTEY 123 >gi|76009080|gb|ABA39002.1| NADH dehydrogenase subunit 6 [Leucopternis schistaceus] gi|281308368|gb|ADA58332.1| NADH dehydrogenase subunit 6 [Leucopternis schistaceus] Length = 172 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|157488889|gb|ABV57848.1| NADH dehydrogenase subunit 6 [Sternula antillarum] Length = 173 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|254471972|ref|ZP_05085373.1| pH adaption potassium efflux system protein PhaA [Pseudovibrio sp. JE062] gi|211959174|gb|EEA94373.1| pH adaption potassium efflux system protein PhaA [Pseudovibrio sp. JE062] Length = 782 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 3/106 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 + + +A+I + V+T R + ++ L A ++LL GA ++ +V +V++ Sbjct: 608 WFIAAIAVIGVYAVLTARYRVTAIVLLGIQGFAVALIYLLFGAPDLSFTQFMVETLSVVI 667 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 ++M ++++ + R RG I +L I +V Sbjct: 668 L---ALVMTRLNLKPTDARSSRGKAFDISIAVLCGAGISMLLMSIV 710 >gi|1171834|sp|P43192|NU6M_ALLAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394652|emb|CAA52120.1| NADH dehydrogenase subunit 6 [Alle alle] gi|21103999|emb|CAC80347.1| NADH dehydrogenase subunit 6 [Alle alle] Length = 173 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A + G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASIAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|281308252|gb|ADA58274.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus] gi|281308254|gb|ADA58275.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus] gi|281308256|gb|ADA58276.1| NADH dehydrogenase subunit 6 [Buteogallus anthracinus] gi|281308320|gb|ADA58308.1| NADH dehydrogenase subunit 6 [Buteogallus subtilis] Length = 172 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|242610529|ref|YP_003001994.1| NADH dehydrogenase subunit 6 [Lophura nycthemera] gi|166066500|gb|ABY80757.1| NADH dehydrogenase subunit 6 [Lophura nycthemera] Length = 173 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 43/105 (40%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG F+++ ++Y+G Sbjct: 2 TYFVIFLGVCFMLGVLGVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFISLALFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++V F++ + + A + G F+ ++ + Sbjct: 62 GMLVVFVYSVALAADPYPEAWGDWRVVGYGLGFVLVVCVGAFLAG 106 >gi|154125715|ref|YP_001382258.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] gi|151327685|gb|ABS00283.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] gi|189342984|gb|ACD92015.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] gi|189342998|gb|ACD92028.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] gi|198387241|gb|ACH87083.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] gi|291464811|gb|ADE05889.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] Length = 173 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 TYFVFFLGICFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR 86 >gi|29569580|gb|AAO85258.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga urubitinga] gi|76009060|gb|ABA38992.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga] gi|281308326|gb|ADA58311.1| NADH dehydrogenase subunit 6 [Buteogallus urubitinga] Length = 172 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|3600008|gb|AAC35512.1| NADH dehydrogenase subunit VI [Rhea americana] Length = 175 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 40/87 (45%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S F + I+ + V + +P Y + L+ + G L LG F++++ +VY Sbjct: 2 MTSYFVFFMGVSFILGALAVASNPSPYYGLLGLVVGSLVGCGWLLSLGVSFISLVLFLVY 61 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +G ++V F++ + + A + Sbjct: 62 LGGMLVVFVYSVSLAADPFPEAWGDWR 88 >gi|115494843|ref|YP_778745.1| NADH dehydrogenase subunit 6 [Neophoca cinerea] gi|115344883|emb|CAJ56934.1| NADH dehydrogenase subunit 6 [Neophoca cinerea] Length = 175 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYFVFILSIVFVIGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIAGLLSELLLAC 105 >gi|14141904|ref|NP_115427.1| NADH dehydrogenase subunit 6 [Pterocnemia pennata] gi|14039536|gb|AAK53280.1|AF338709_13 NADH dehydrogenase subunit VI [Pterocnemia pennata] Length = 174 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 40/87 (45%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M S F + ++ + V + +P Y + L+ + G L LG F++++ +VY Sbjct: 1 MTSYFVFFMGLSFVLGALAVASNPSPYYGLLGLVVGSLVGCGWLLSLGVSFISLVLFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +G ++V F++ + + A + Sbjct: 61 LGGMLVVFVYSVSLAADPFPEAWGDWR 87 >gi|331087469|gb|AEC53547.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus] Length = 172 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLGVCFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|213136135|gb|ACJ43685.1| NADH dehydrogenase subunit 6 [Mertensiella caucasica] Length = 173 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P Y+ F L+ A + L + LG F+++I ++VY+G ++V F + Sbjct: 21 SNPSPYYAAFGLVLASFSGCCLLVELGVCFLSLILVLVYMGGMMVVFAYAASFSAEPFPE 80 Query: 84 AEPRKK-RGFLGSFFIGILAAELIVCASNFMV 114 A ++ +F+ I + + SNF V Sbjct: 81 AWGSWSVLAYMTKYFVIISLVGVWLLNSNFSV 112 >gi|310007457|gb|ADP00770.1| NADH dehydrogenase subunit 6 [Morone americana] Length = 172 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 4/157 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ + F+L F ++S V +P Y F L+ + + G FVA+I ++ Sbjct: 1 MITYAACFFLVGF--VLSMVAVACNPSPFYGSFGLVAVAGFGCAVVIGFGGVFVALILVM 58 Query: 61 VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE- 118 +YVGA++V F++ + D E G G +F+G++AA + + Sbjct: 59 IYVGAMLVVFVYSAALAADRYPESWGSGSVAGQAGGYFLGLMAAFSFFWKEEYGILGGPL 118 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155 G + + ++ + + + A + +G +LL Sbjct: 119 GSVEEWASQRGDISGVSWMYSSGGALLVISAGALLLT 155 >gi|76009038|gb|ABA38981.1| NADH dehydrogenase subunit 6 [Leucopternis lacernulatus] Length = 172 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|262200681|ref|YP_003271889.1| NADH/Ubiquinone/plastoquinone (complex I) [Gordonia bronchialis DSM 43247] gi|262084028|gb|ACY19996.1| NADH/Ubiquinone/plastoquinone (complex I) [Gordonia bronchialis DSM 43247] Length = 950 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 3/108 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+ + I S+ + +RN + + LF L GA +A+ +V + Sbjct: 582 YVIGGIMIASALVATVLRNRLAGALIVGVTGYGCGMLFALYGAPDLALTQFLV---ETLT 638 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 +F++++ + E IG+ ++V F + Sbjct: 639 LVIFVLVLRKLPAEPEPRHSTGFKPLRALIGVAFGIMLVTIGLFAAAA 686 >gi|108793517|ref|YP_637113.1| NADH dehydrogenase subunit 6 [Podiceps cristatus] gi|108755535|dbj|BAE95766.1| NADH dehydrogenase subunit 6 [Podiceps cristatus] Length = 173 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LGA FV+++ +VY+G Sbjct: 2 AYFVIFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|40388207|gb|AAQ91105.1| NADH dehydrogenase subunit 6 [Acanthisitta chloris] Length = 173 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F S I+ V + +P Y V L+ V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLSLCFILGGLAVASSPSPYYGVVGLVLGAVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|5834979|ref|NP_008132.1|ND6_10421 NADH dehydrogenase subunit 6 [Paracentrotus lividus] gi|128819|sp|P12777|NU6M_PARLI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|854697|gb|AAA68144.1| NADH dehydrogenase subunit 6 [Paracentrotus lividus] Length = 160 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + YL + + S LV +P YS L+ ++ + LG FVA++ ++VY+G Sbjct: 1 MALYLILVLMLFGSTLVFYSLSPYYSALGLVVVSISGCIILSFLGGSFVALVLVLVYMGG 60 Query: 66 VIVFFLF 72 ++V F + Sbjct: 61 MLVVFAY 67 >gi|37496445|emb|CAD21984.1| NADH dehydrogenase subunit 6 [Procavia capensis] Length = 179 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 1/101 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +PI+ I + +GL + G F+ ++ ++Y+G ++V Sbjct: 6 FILSVVFVLGFVGFSSKPSPIFGGLVFIVSGGVGSGLIVSSGGSFLGVVMFLIYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 F + M + + F GS F+G+L L+V Sbjct: 66 VFGYTTAMATEEYPESWVSNWVVF-GSLFLGVLFEVLVVIW 105 >gi|281308328|gb|ADA58312.1| NADH dehydrogenase subunit 6 [Geranospiza caerulescens] Length = 172 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|281308240|gb|ADA58268.1| NADH dehydrogenase subunit 6 [Buteogallus aequinoctialis] gi|281308242|gb|ADA58269.1| NADH dehydrogenase subunit 6 [Buteogallus aequinoctialis] Length = 172 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|16357120|ref|NP_443487.1| NADH dehydrogenase subunit 6 [Ijimaia dofleini] gi|16266815|dbj|BAB70012.1| NADH dehydrogenase subunit 6 [Ijimaia dofleini] Length = 173 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 48/109 (44%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + +LF I+ V + P ++ L+ A G+ + G F++++ ++Y+G Sbjct: 2 TYLMFLFLLGLIVGLVGVASNPAPYFAALGLVLAAGCGCGILVGFGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + + E R G++ + +G+L + + + Sbjct: 62 GMLVVFAYSAALAAEPFPETWGDRSVLGYVAIYLMGLLFFSVWFWGAWY 110 >gi|331746935|ref|YP_004425083.1| NADH dehydrogenase subunit 6 [Anas formosa] gi|330369642|gb|AEC12187.1| NADH dehydrogenase subunit 6 [Anas formosa] Length = 173 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 TYFVFFLGICFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR 86 >gi|296099568|gb|ADG95177.1| NADH dehydrogenase subunit 6 [Polypterus bichir bichir] Length = 167 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 49/112 (43%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS + + S V + +P ++ F L+ G+ + G F++MI ++Y+G Sbjct: 2 VLMVVFSVIFLFSLIAVASNPSPYFAAFGLMVGAGAGCGMLMQCGMTFLSMILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + A + ++ ++ +V +F VF + Sbjct: 62 MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVLLIVGVWVVFVGDFEVFDS 113 >gi|5835945|ref|NP_008711.1|ND6_15091 NADH dehydrogenase subunit 6 [Aythya americana] gi|4887672|gb|AAD32264.1|AF090337_13 NADH dehydrogenase subunit 6 [Aythya americana] Length = 173 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 TYFVFFLGVCFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR 86 >gi|11643425|gb|AAG39573.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] Length = 172 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + E G +G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120 >gi|16797929|gb|AAL29217.1| NADH dehydrogenase subunit 6 [Recurvirostra avosetta] Length = 173 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 40/94 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGISFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A G FI Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGSWGVVGYGLGFI 95 >gi|11643283|gb|AAG39502.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides viridanus] Length = 172 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFVLGGLAVASNPSPYYGVLGLVVASIAGWGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + A G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYSVSLAADPYPEAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120 >gi|108793432|ref|YP_636891.1| NADH dehydrogenase subunit 6 [Sirembo imberbis] gi|25005535|dbj|BAC23201.1| NADH dehydrogenase subunit 6 [Sirembo imberbis] Length = 173 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 ++F + +I V + +P ++ F L+ ++GL + G F +++ ++Y+G Sbjct: 3 FMMWVFLYGLVIGMAGVASNPSPYFAAFGLVVVAGMSSGLLVSYGGSFFSLVLFLIYLGG 62 Query: 66 VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + + E R G++ ++ G+L A + + + Sbjct: 63 MLVVFAYCAALAAEPYPESWGSRSVLGYVMAYLGGVLLAVKVWGGAWY 110 >gi|25057240|ref|NP_740177.1| NADH dehydrogenase subunit 6 [Rhyacichthys aspro] gi|25006206|dbj|BAC23811.1| NADH dehydrogenase subunit 6 [Rhyacichthys aspro] Length = 173 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F F I+ V + +P ++ L+ G+ + GA F++++ ++Y+G ++V Sbjct: 7 VFMFGLIMGLVAVASNPSPYFAALGLVVVSGMGCGVLVGHGAPFLSLVLFLIYLGGMLVV 66 Query: 70 FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + E R +G + G+L A F Sbjct: 67 FAYSAALAAEPYPETLGSRAVALNVGMYLAGVLVAASFFWGGWF 110 >gi|76009040|gb|ABA38982.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus] gi|76009042|gb|ABA38983.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus] gi|281308334|gb|ADA58315.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus coronatus] Length = 172 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|329896272|ref|ZP_08271428.1| Na+/H+ antiporter MnhB subunit-related protein [gamma proteobacterium IMCC3088] gi|328921877|gb|EGG29245.1| Na+/H+ antiporter MnhB subunit-related protein [gamma proteobacterium IMCC3088] Length = 324 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 43/117 (36%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++F + +I++ V+ N +V + + A F LL A VA+ V Sbjct: 1 MTAVFSIFLLSLLVITAGAVIRATNLFVAVMLMSIFSLLIAVSFFLLDAADVALTEAAVG 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 G V FL + L + + + GIL A + +F SA Sbjct: 61 AGISTVLFLSALAALTEEERKQTSGRIAALISVSITGILIAYATLYKPDFGDPSAPA 117 >gi|281308340|gb|ADA58318.1| NADH dehydrogenase subunit 6 [Harpyhaliaetus solitarius] Length = 172 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|331087464|gb|AEC53545.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus] gi|331087467|gb|AEC53546.1| NADH dehydrogenase subunit 6 [Acrocephalus arundinaceus] Length = 172 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLGVCFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|120586750|ref|YP_961406.1| NADH dehydrogenase subunit 6 [Elaphodus cephalophus] gi|111380732|gb|ABH09747.1| NADH dehydrogenase subunit 6 [Elaphodus cephalophus] Length = 175 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L ++V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFITGLLMEAMMV 104 >gi|256393975|ref|YP_003115539.1| hypothetical protein Caci_4837 [Catenulispora acidiphila DSM 44928] gi|256360201|gb|ACU73698.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928] Length = 93 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + L YL + + + LVV +RN +V +L + LF++LGA A +V Sbjct: 1 MTVFWLMDYLLLALTLGCAVLVVRLRNLSGAVMALSAVGAFLSLLFVVLGAPDDAHSEIV 60 Query: 61 VYVGAVIVFFLFII 74 V A+ V +L I Sbjct: 61 VGSIALPVLYLVAI 74 >gi|322422853|ref|YP_004222722.1| NADH dehydrogenase subunit 6 [Leiothrix argentauris] gi|316891659|gb|ADU57270.1| NADH dehydrogenase subunit 6 [Leiothrix argentauris] Length = 172 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 3/101 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F L ++ V + +P Y V L+ A + G + LGA FV+++ L+VY+G + Sbjct: 4 FVLLMGLFFVLGGLAVSSNPSPYYGVVGLVVASIAGCGWLVSLGASFVSLVLLMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRK---KRGFLGSFFIGILAAE 104 +V F++ + + A GF S +G+ A Sbjct: 64 LVVFVYSVSLAADPYPEAWGDWGVVGYGFGMSLVVGVGLAL 104 >gi|13508747|emb|CAC35123.1| NADH dehydrogenase subunit 6 [Muscicapa striata] gi|14268494|emb|CAC39396.1| NADH dehydrogenase subunit 6 [Muscicapa striata] Length = 172 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MHFVLF--LGVCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVA 84 +G ++V F++ + + A Sbjct: 60 LGGMLVVFVYSVALAAEPYPEA 81 >gi|83309070|ref|YP_423948.1| NADH dehydrogenase subunit 6 [Cathartes aura] gi|38373484|gb|AAR19060.1| NADH dehydrogenase subunit 6 [Cathartes aura] Length = 173 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVFFLGVCFVLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A ++ Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDRR 86 >gi|189095485|ref|YP_001936644.1| NADH dehydrogenase subunit 6 [Lophura ignita] gi|171702231|dbj|BAG16260.1| NADH dehydrogenase subunit 6 [Lophura ignita] Length = 173 Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 44/105 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG F+++ ++Y+G Sbjct: 2 TYFVIFLGVCFMLGVLGVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLALFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++V F++ + + A + G F+ ++ ++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCVGAVLAG 106 >gi|37596483|gb|AAQ95002.1| NADH dehydrogenase subunit 6 [Anomalospiza imberbis] Length = 159 Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A V G + LG F++++ ++VY+G + Sbjct: 4 FVLFLGLCFVLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|215399152|ref|YP_002332282.1| NADH dehydrogenase subunit 6 [Podarcis muralis] gi|62900869|gb|AAY18758.1| NADH dehydrogenase subunit 6 [Podarcis muralis] gi|213983300|gb|ACJ54983.1| NADH dehydrogenase subunit 6 [Podarcis muralis] Length = 171 Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +IS V + +P + +L+ G+ +LLG+ FV+++ L++Y+G ++V Sbjct: 7 FLVVCLVISLIGVASNPSPYFGAGNLVVGASLGCGILILLGSSFVSLVLLLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 F + + L D K G+ G + + +L ++ F+ G Sbjct: 67 FAYSV-ALASDPFPEMWGKVGGYFGGYVVLVLFLIMMFSEGAFISLGVSG 115 >gi|115494689|ref|YP_778693.1| NADH dehydrogenase subunit 6 [Callorhinus ursinus] gi|115344827|emb|CAJ56882.1| NADH dehydrogenase subunit 6 [Callorhinus ursinus] Length = 175 Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIAGLLSELLLAC 105 >gi|76009032|gb|ABA38978.1| NADH dehydrogenase subunit 6 [Buteo leucorrhous] Length = 172 Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ + G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|224503994|gb|ACN53578.1| NADH dehydrogenase subunit 6 [Balearica regulorum] Length = 173 Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 41/94 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A + + FI Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVMGYTAGFI 95 >gi|5081427|gb|AAD39376.1|AF123896_1 NADH dehydrogenase subunit 6 [Balearica regulorum] Length = 173 Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 41/94 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A + + FI Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVMGYTAGFI 95 >gi|195182432|emb|CAQ68480.1| NADH dehydrogenase subunit 6 [Tremarctos ornatus] Length = 175 Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +P+Y LI + G+ L G F+ ++ ++Y Sbjct: 1 MVTYTVFILSVVFVMGFVGFSSKPSPVYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G+L+ L+VC Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIAGLLSELLVVC 105 >gi|21449971|ref|NP_659348.1| NADH dehydrogenase subunit 6 [Odobenus rosmarus rosmarus] gi|21425422|emb|CAD21717.1| NADH dehydrogenase subunit 6 [Odobenus rosmarus rosmarus] Length = 175 Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVIGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLAC 105 >gi|148292254|dbj|BAF62958.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|148292268|dbj|BAF62971.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] gi|150372667|dbj|BAF66130.1| NADH dehydrogenase subunit 6 [Eumetopias jubatus] Length = 175 Score = 39.6 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLLAC 105 >gi|89255434|ref|YP_514603.1| NADH dehydrogenase subunit 6 [Menura novaehollandiae] gi|42494924|gb|AAS17746.1| NADH dehydrogenase subunit 6 [Menura novaehollandiae] Length = 172 Score = 39.6 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 15 GGLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLA 74 Query: 78 DIDIEVAEPRKK-----RGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 + + G IG++ + L C + G LS Sbjct: 75 ADPFPKSWGDWRVAGYGVGLGLVVIIGVVLSGLFGCWLGVDTVNNVGILS 124 >gi|16797946|gb|AAL29225.1| NADH dehydrogenase subunit 6 [Charadrius alexandrinus] Length = 173 Score = 39.6 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG F++++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFISLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|319947846|ref|ZP_08022034.1| hypothetical protein ES5_00922 [Dietzia cinnamea P4] gi|319438491|gb|EFV93423.1| hypothetical protein ES5_00922 [Dietzia cinnamea P4] Length = 187 Score = 39.6 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 52/111 (46%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F++ + +A+ + V V + + ++L +F+ + LLLG ++ +IT+++ V Sbjct: 5 IVFWVLAVVAVTAGTAVFVVDSMARATYALAASFIAVGVMILLLGQSYLGIITILMMVME 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 + V ++++M + ++ + G + + L+ + + + Sbjct: 65 MAVMAVYMVMFMGMNPALMPMDMTHGKKTAIGTSVGVFVLLAAGALLIPWP 115 >gi|195661154|ref|YP_002117891.1| NADH dehydrogenase subunit 6 [Epinephelus akaara] gi|153973795|gb|ABS54460.1| NADH dehydrogenase subunit 6 [Epinephelus akaara] Length = 173 Score = 39.6 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F + I+ + V + +P + L+ G F+ G+ F+A+I + Sbjct: 1 MCFTVICFLIC---WIVGAIAVASNPSPFFGALGLVMVAGVGCGFFVEFGSPFLALILFL 57 Query: 61 VYVGAVIVFFLF 72 +Y+G ++V F + Sbjct: 58 IYLGGMLVVFAY 69 >gi|14142007|ref|NP_115387.1|ND6_15668 NADH dehydrogenase subunit 6 [Dogania subplana] gi|14030549|gb|AAK52953.1|AF366350_12 NADH dehydrogenase subunit 6 [Dogania subplana] Length = 174 Score = 39.6 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 48/109 (44%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 F +LF I V + +P Y V L+F V + + + LG F++++ ++Y+G Sbjct: 3 FFMFLFEVCFIFWVVGVASGPSPYYGVVGLVFGAVFGSLMLVGLGGSFISLVLFLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 ++V F + + + A F ++ ++ + C S + + Sbjct: 63 MLVVFAYSVALTGDPYPSAWRSYGDLFCMVGYVLLVIGAAMFCFSVWSL 111 >gi|312233191|ref|YP_004021415.1| NADH dehydrogenase subunit 6 [Phalacrocorax chalconotus] gi|312233192|ref|YP_004021416.1| NADH dehydrogenase subunit 6 [Phalacrocorax chalconotus] Length = 173 Score = 39.6 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVMGCGWLLSLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|238550675|gb|ACR44520.1| NADH dehydrogenase subunit 6 [Chrysolophus amherstiae] Length = 173 Score = 39.6 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 44/105 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG F+++ +VY+G Sbjct: 2 TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++V F++ + + A + G F+ ++ + + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCVGVFLAG 106 >gi|5834869|ref|NP_006939.1|ND6_10018 NADH dehydrogenase subunit 6 [Phoca vitulina] gi|128820|sp|Q00543|NU6M_PHOVI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|13443|emb|CAA45268.1| NADH dehydrogenase subunit 6 [Phoca vitulina] gi|115345051|emb|CAJ57090.1| NADH dehydrogenase subunit 6 [Phoca vitulina] Length = 175 Score = 39.6 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + + I+ + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYT-TAMAIEQYPEVWVSNKAVLGAFVMGLLSELLLAC 105 >gi|295641241|gb|ADG22779.1| NADH dehydrogenase subunit 6 [Arctonyx collaris] Length = 177 Score = 39.6 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLMAC 105 >gi|255644079|gb|ACU22483.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644103|gb|ACU22501.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644107|gb|ACU22504.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644119|gb|ACU22513.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644123|gb|ACU22516.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644131|gb|ACU22522.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644179|gb|ACU22558.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ +V ++N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVVLSTNL 109 >gi|11643237|gb|AAG39479.1| NADH dehydrogenase subunit 6 [Phylloscopus nitidus] gi|11643239|gb|AAG39480.1| NADH dehydrogenase subunit 6 [Phylloscopus nitidus] Length = 172 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|55979233|ref|YP_145513.1| NADH dehydrogenase subunit 6 [Asymmetron lucayanum] gi|55771048|dbj|BAD72150.1| NADH dehydrogenase subunit 6 [Asymmetron lucayanum] Length = 167 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 46/95 (48%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF+F ++++ +V+ ++P +S ++ + + + F AMI +++Y+G ++V Sbjct: 5 LFNFTILLAAMMVIRAKSPYFSALAMALLALLLSVAMFQMNLIFPAMILMLIYLGGMLVV 64 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104 F++ I + + +F G+LA Sbjct: 65 FVYSTAYSADLIPLPMNMTLTLLIATFGTGLLATA 99 >gi|288898401|gb|ADC66711.1| NADH dehydrogenase subunit 6 [Ursus arctos] Length = 175 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M +F + S + ++ + +PIY LI + G+ L G F+ ++ + Sbjct: 1 MTMYIVF--ILSVVFVMGFVGFSSKPSPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFL 58 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +Y+G ++V F + M + LG+F +G+L+ LI C Sbjct: 59 IYLGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLIAC 105 >gi|304322925|ref|YP_003856771.1| NADH dehydrogenase subunit 6 [Lynx rufus] gi|262232100|gb|ACY38382.1| NADH dehydrogenase subunit 6 [Lynx rufus] Length = 175 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTIFVVSFVGFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K LG GILA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGMLITGILAELLTAC 105 >gi|189095527|ref|YP_001936482.1| NADH dehydrogenase subunit 6 [Syrmaticus humiae] gi|171702203|dbj|BAG16234.1| NADH dehydrogenase subunit 6 [Syrmaticus humiae] Length = 173 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 44/105 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVSLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++V F++ + + A + G F+ ++ + + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCVGVFLVG 106 >gi|120944014|ref|YP_973113.1| NADH dehydrogenase subunit 6 [Ursus thibetanus mupinensis] gi|89112907|gb|ABD61071.1| NADH dehydrogenase subunit 6 [Ursus thibetanus mupinensis] Length = 175 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSIVFVMSFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M+ + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMVTERYPEV-WVSNKAVLGAFIVGLLSELLIAC 105 >gi|122891712|ref|YP_001004163.1| NADH dehydrogenase subunit 6 [Crocodylus siamensis] gi|82395897|gb|ABB72524.1| NADH dehydrogenase subunit 6 [Crocodylus porosus] gi|84682153|gb|ABC60415.1| NADH dehydrogenase subunit 6 [Crocodylus siamensis] Length = 175 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 44/99 (44%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L F+ ++S LV + Y V SL+FA + +GL + G F+ ++ L++Y+G Sbjct: 3 ITFFLLCFLMMVSVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104 ++V F F + D L L Sbjct: 63 LLVVFAFCVGFTDDKYCEFWGVGGSKVLAYVCGAGLGIG 101 >gi|5081435|gb|AAD39380.1|AF123900_1 NADH dehydrogenase subunit 6 [Grus leucogeranus] gi|224504064|gb|ACN53643.1| NADH dehydrogenase subunit 6 [Grus leucogeranus] Length = 173 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 37/72 (51%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|119360775|ref|YP_913755.1| NADH dehydrogenase subunit 6 [Vaillantella maassi] gi|119225483|dbj|BAF41829.1| NADH dehydrogenase subunit 6 [Vaillantella maassi] Length = 173 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 2/116 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 F YL I+ V + P ++ L+ A G+ + G F+A+I ++Y+G Sbjct: 3 FFLYLLLVAFIVGLVAVASNPAPYFAALGLVVAAGVGCGVLIEHGGPFLALILFLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 ++V +F E R +G + +L L+ + + Sbjct: 63 MLV--VFAYSAALAAEPFPEAWGDRSVIGYVLVYLLGVGLMAGVFWGDWYGGSWSV 116 >gi|19343529|ref|NP_597992.1| NADH dehydrogenase subunit 6 [Ursus maritimus] gi|19110585|gb|AAL85193.1|AF303111_13 NADH dehydrogenase subunit 6 [Ursus maritimus] gi|21425564|emb|CAD21730.1| NADH dehydrogenase subunit 6 [Ursus maritimus] gi|288898373|gb|ADC66685.1| NADH dehydrogenase subunit 6 [Ursus maritimus] gi|288898387|gb|ADC66698.1| NADH dehydrogenase subunit 6 [Ursus arctos] gi|288898415|gb|ADC66724.1| NADH dehydrogenase subunit 6 [Ursus maritimus] gi|288898429|gb|ADC66737.1| NADH dehydrogenase subunit 6 [Ursus arctos] gi|288898443|gb|ADC66750.1| NADH dehydrogenase subunit 6 [Ursus maritimus] Length = 175 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M +F + S + ++ + +PIY LI + G+ L G F+ ++ + Sbjct: 1 MTMYIVF--ILSVVFVMGFVGFSSKPSPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFL 58 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +Y+G ++V F + M + LG+F +G+L+ LI C Sbjct: 59 IYLGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLIAC 105 >gi|325126801|ref|YP_004285943.1| NADH dehydrogenase subunit 6 [Pica pica] gi|324022989|gb|ADY15553.1| NADH dehydrogenase subunit 6 [Pica pica] Length = 173 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 39/83 (46%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S ++ V + +P Y V L+ A + G + +G FV+++ ++VY+G + Sbjct: 4 FVLFMSLFFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSMGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F++ + + + + Sbjct: 64 LVVFVYSVSLAADPYPESWGNWR 86 >gi|54112097|ref|YP_122154.1| NADH dehydrogenase subunit 6 [Zaglossus bruijni] gi|54019669|emb|CAG26340.1| NADH dehydrogenase subunit 6 [Zaglossus bruijni] Length = 166 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 43/99 (43%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F YL S + ++S + +PIY SL+ + G+ + LG F+ +I +VY+G + Sbjct: 4 FIYLLSIVLVLSFMAFASKPSPIYGGLSLVLSGGVGCGIIVSLGGSFLGLIVFLVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 +V F + M + + +G+L Sbjct: 64 LVVFGYTAAMATEEYPETWVDNTVVLNLAIMMGMLGVVW 102 >gi|76009064|gb|ABA38994.1| NADH dehydrogenase subunit 6 [Geranospiza caerulescens] Length = 172 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVMGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|108802854|ref|YP_637151.1| NADH dehydrogenase subunit 6 [Crocodylus porosus] gi|81295123|emb|CAH18615.1| NADH dehydrogenase subunit 6 [Crocodylus porosus] Length = 175 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 44/99 (44%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L F+ ++S LV + Y V SL+FA + +GL + G F+ ++ L++Y+G Sbjct: 3 ITFFLLCFLMMVSVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104 ++V F F + D L L Sbjct: 63 LLVVFAFCVGFTDDKYCEFWGAGGSKVLAYVCGAGLGIG 101 >gi|190349341|ref|YP_001974591.1| NADH dehydrogenase subunit 6 [Cairina moschata] gi|189343012|gb|ACD92041.1| NADH dehydrogenase subunit 6 [Cairina moschata] Length = 173 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 TYFVFFLGVCFVLGILGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR 86 >gi|16797940|gb|AAL29222.1| NADH dehydrogenase subunit 6 [Numenius arquata] Length = 173 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLLLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGISFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|15866262|gb|AAL10291.1| NADH dehydrogenase subunit 6 [Gracula religiosa intermedia] Length = 82 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F I+ V + +P Y V L+ A V G + LG FVA++ ++VY Sbjct: 2 MEFVMF--LGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|253993159|gb|ACT52819.1| NADH dehydrogenase subunit 6 [Philomachus pugnax] Length = 173 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 41/94 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L +++ V + +P Y V L+ A + LG FV+++ +VY+G Sbjct: 2 TYFVLLLGLCSVLGGLAVASNPSPYYGVVGLVLASAAXXXXXISLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A + G FI Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYGMGFI 95 >gi|219524269|ref|YP_002456409.1| NADH dehydrogenase subunit 6 [Mitsukurina owstoni] gi|169640938|gb|ACA61228.1| NADH dehydrogenase subunit 6 [Mitsukurina owstoni] Length = 173 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 4/108 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +L I+ V + +P Y+ L+ A GL + G F+++I ++Y+G + Sbjct: 4 FMFLMMICLILGLIGVASNPSPYYAALGLVMAAGVGCGLLVGHGGSFMSLILFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +V F + + P + ++G LI + FMV Sbjct: 64 LVVFAYTAAL----AAEPYPESWGNWSVLLYVGFYFMGLIFISKYFMV 107 >gi|195933661|ref|YP_002117956.1| NADH dehydrogenase subunit 6 [Ursus thibetanus thibetanus] gi|146221817|gb|ABQ12046.1| NADH dehydrogenase subunit 6 [Ursus thibetanus thibetanus] Length = 175 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++S + +PIY LI + G+ L G F+ ++ +VY Sbjct: 1 MMMYIVFILSIVFVMSFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105 >gi|138892893|ref|YP_001127602.1| NADH dehydrogenase subunit 6 [Ursus thibetanus formosanus] gi|195933648|ref|YP_002117941.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus] gi|117649944|gb|ABK54011.1| NADH dehydrogenase subunit 6 [Ursus thibetanus formosanus] gi|148910928|gb|ABR18510.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus] gi|151384883|gb|ABS11106.1| NADH dehydrogenase subunit 6 [Ursus thibetanus ussuricus] gi|195182356|emb|CAQ68415.1| NADH dehydrogenase subunit 6 [Ursus thibetanus] Length = 175 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++S + +PIY LI + G+ L G F+ ++ +VY Sbjct: 1 MMMYIVFILSIVFVMSFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105 >gi|227002032|gb|ACP04268.1| NADH dehydrogenase subunit 6 [Phoca largha] Length = 175 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105 >gi|122056419|gb|ABM66076.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056421|gb|ABM66077.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056423|gb|ABM66078.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056425|gb|ABM66079.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056427|gb|ABM66080.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056429|gb|ABM66081.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056431|gb|ABM66082.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056433|gb|ABM66083.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] gi|122056435|gb|ABM66084.1| NADH dehydrogenase subunit 6 [Cygnus buccinator] Length = 172 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 1 AYFMFFLGICFMVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 60 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 ++V F++ + + A + +G + + + FM Sbjct: 61 GMLVVFVYSVALAAEPFPEAWGDWR--VIGYAAAFVAVVFVGLVFGGFM 107 >gi|121582428|ref|YP_980242.1| NADH dehydrogenase subunit 6 [Varanus niloticus] gi|121309444|dbj|BAF44056.1| NADH dehydrogenase subunit 6 [Varanus niloticus] Length = 176 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 ++ LV + +P++ V SL+ A G ++ G F++++ +VY+G ++V F + + Sbjct: 12 LVVCGLLVGSNPSPLFGVVSLVLLAFVACGFLVMSGYSFLSLVLFLVYLGGMVVVFAYSV 71 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 M E + F G++ IV + Sbjct: 72 SMAS--ELQPEAWLGWSVMPYFLGGLVGVIFIVVVT 105 >gi|108793306|ref|YP_637034.1| NADH dehydrogenase subunit 6 [Dactylopsila trivirgata] gi|94481185|dbj|BAE93991.1| NADH dehydrogenase subunit 6 [Dactylopsila trivirgata] Length = 167 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 47/115 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +PIY SL+ + + + LG F+ ++ +VY Sbjct: 1 MEMMVIFLFSVLLIFGFVAFASKPSPIYGGLSLVASGGLGCAMVVSLGDIFLGLVVFMVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M + + F F ++ + + V A Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNTVAFSMLLFALLVEVAWFFVSDDIEVTVA 115 >gi|327492735|ref|YP_004347624.1| NADH dehydrogenase subunit 6 [Omegophora armilla] gi|327392614|dbj|BAK10040.1| NADH dehydrogenase subunit 6 [Omegophora armilla] Length = 173 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 40/109 (36%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF + V + +P + SL+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLVGLVFGLVAVASNPSPYFGALSLVVVAAFGCGILIWHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 F + + + + GI+ + +S E Sbjct: 67 FAYSVALAAEPYPETLGSWPVLASMLMYFGIVVLFFTLVFGGLGEYSWE 115 >gi|325126828|ref|YP_004285968.1| NADH dehydrogenase subunit 6 [Pennahia argentata] gi|324023002|gb|ADY15565.1| NADH dehydrogenase subunit 6 [Pennahia argentata] Length = 173 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF F ++ V + +P ++ L+ G+ + G F+A++ ++Y+G Sbjct: 2 TYIMSLFLFGMVLGVVAVASNPSPYFAALGLVAVAGLGCGVLVGYGGHFLAIVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + G ++A + V + + + E S + Sbjct: 62 GMLVVFAYSSAL------AAEPYPESWGSGPVVAHVIAYSVGVALVSGVFWGGWYETSWV 115 Query: 125 VFK 127 Sbjct: 116 PVD 118 >gi|166093151|gb|ABY82580.1| NADH dehydrogenase subunit 6 [Tyto alba] Length = 172 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 42/85 (49%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + + ++ +V + +P + L+ A V+ L LGA F+A++ +VY+G Sbjct: 2 TYFMFFWGASLVLGGLVVASNPSPYFGAVGLVVASVSGCIWLLSLGASFIALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A ++ Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDRR 86 >gi|189095513|ref|YP_001936301.1| NADH dehydrogenase subunit 6 [Syrmaticus ellioti] gi|171702189|dbj|BAG16221.1| NADH dehydrogenase subunit 6 [Syrmaticus ellioti] Length = 173 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 44/105 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVSLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++V F++ + + A + G F+ ++ + + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCVGVFLAG 106 >gi|219524144|ref|YP_002456294.1| NADH dehydrogenase subunit 6 [Bambusicola thoracica] gi|157678142|gb|ABV60462.1| NADH dehydrogenase subunit 6 [Bambusicola thoracica] Length = 173 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F++ + + A + +G IL + F+ F Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR--VVGYGLGFILVVFVGAVLGGFVDF 110 >gi|154937321|ref|YP_001425584.1| NADH dehydrogenase subunit 6 [Egretta eulophotes] gi|154432349|gb|ABS82067.1| NADH dehydrogenase subunit 6 [Egretta eulophotes] Length = 173 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ + G L LG F++++ +VY+G Sbjct: 2 TYFVIFLGVCFVLGGLAVASNPSPYYGVVGLVLGSLVGCGWLLSLGVSFISLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|115494759|ref|YP_778888.1| NADH dehydrogenase subunit 6 [Phoca largha] gi|115345037|emb|CAJ57077.1| NADH dehydrogenase subunit 6 [Phoca largha] Length = 175 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105 >gi|327493043|ref|YP_004347990.1| NADH dehydrogenase subunit 6 [Canthigaster jactator] gi|327392264|dbj|BAK09715.1| NADH dehydrogenase subunit 6 [Canthigaster jactator] Length = 173 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 43/108 (39%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P + SL+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLMGLVLGLVAVASNPSPYFGALSLVAVGFFGCGVLVWHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + S ++G+++ + + +S Sbjct: 67 FAYSAALAAEPYPETLGSWPVLVSMSMYVGVVSLAFVSFLGGWGEYSW 114 >gi|188484473|gb|ACD50862.1| orf37 [Phytophthora ramorum] Length = 37 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 23/36 (63%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLI 36 M +++FFY FS +A+ S+ V+ N IYS F LI Sbjct: 1 MNFETIFFYTFSTIALTSAIFVIYSTNTIYSAFFLI 36 >gi|322422491|ref|YP_004222069.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|322422492|ref|YP_004222070.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525910|gb|ADW41480.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525911|gb|ADW41481.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525929|gb|ADW41497.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525932|gb|ADW41499.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525935|gb|ADW41501.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525938|gb|ADW41503.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525941|gb|ADW41505.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525958|gb|ADW41516.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525960|gb|ADW41517.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525962|gb|ADW41518.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525964|gb|ADW41519.1| NADH dehydrogenase subunit 6 [Aceros waldeni] gi|320525966|gb|ADW41520.1| NADH dehydrogenase subunit 6 [Aceros waldeni] Length = 173 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 37/78 (47%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + ++ V + +P Y V L+ A V G L LG F+A++ +VY+G + Sbjct: 4 FVFFLGLAFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFIALVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVA 84 +V F++ + + A Sbjct: 64 LVVFVYSVALAADPFPEA 81 >gi|195661267|ref|YP_002117930.1| NADH dehydrogenase subunit 6 [Arctodus simus] gi|195182401|emb|CAQ68454.1| NADH dehydrogenase subunit 6 [Arctodus simus] Length = 175 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVVFVMGFVGFSSKPSPIYGGLVLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+VC Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLVVC 105 >gi|115494619|ref|YP_778927.1| NADH dehydrogenase subunit 6 [Pusa hispida] gi|115345107|emb|CAJ57142.1| NADH dehydrogenase subunit 6 [Pusa hispida] Length = 175 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105 >gi|11643361|gb|AAG39541.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643371|gb|AAG39546.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643379|gb|AAG39550.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643383|gb|AAG39552.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643385|gb|AAG39553.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643387|gb|AAG39554.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643389|gb|AAG39555.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643391|gb|AAG39556.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643393|gb|AAG39557.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643395|gb|AAG39558.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643397|gb|AAG39559.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643399|gb|AAG39560.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643401|gb|AAG39561.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643405|gb|AAG39563.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643407|gb|AAG39564.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643409|gb|AAG39565.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643411|gb|AAG39566.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] gi|11643415|gb|AAG39568.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643417|gb|AAG39569.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643421|gb|AAG39571.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643423|gb|AAG39572.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643429|gb|AAG39575.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643431|gb|AAG39576.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643433|gb|AAG39577.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643435|gb|AAG39578.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643437|gb|AAG39579.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643439|gb|AAG39580.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643441|gb|AAG39581.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643443|gb|AAG39582.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643445|gb|AAG39583.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643447|gb|AAG39584.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643449|gb|AAG39585.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] gi|11643451|gb|AAG39586.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus] gi|11643453|gb|AAG39587.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus] gi|11643455|gb|AAG39588.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus] gi|11643457|gb|AAG39589.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus] gi|11643459|gb|AAG39590.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides obscuratus] Length = 172 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + A G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYSVSLAADPYPEAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120 >gi|296099680|gb|ADG95281.1| NADH dehydrogenase subunit 6 [Polypterus palmas buettikoferi] Length = 167 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 49/110 (44%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L +FS + +IS V + +P ++ F L+ G+ + G F++MI ++Y+G Sbjct: 2 LLMVVFSIIFLISLIAVASNPSPYFAAFGLMVGAGAGCGMLMQCGVTFLSMILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F + + A + ++ ++ +V +F +F Sbjct: 62 MLVVFAYSAALAAEPYPHAWGSWEVFSYVLGYMFLVIVLWVVFVGDFGLF 111 >gi|317134260|ref|YP_004123199.1| NADH dehydrogenase subunit 6 [Rattus leucopus] gi|290573368|gb|ADD46490.1| NADH dehydrogenase subunit 6 [Rattus leucopus] Length = 172 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLAGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ FFI L EL+V Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFGFFILGLFMELVV 102 >gi|213136065|gb|ACJ43620.1| NADH dehydrogenase subunit 6 [Echinotriton andersoni] Length = 172 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 47/107 (43%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L + ++ V + +P ++ F LI A V L + LG F++++ +VY+G ++V Sbjct: 6 FLSMVVMLVGLVAVASNPSPYFAAFGLILASVGGCCLLVDLGVSFLSLVLFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 F + + A ++ L A +++ ++ + Sbjct: 66 VFAYSASLAAEPYPEAWGSWSVMGYVCVYVAFLVAGVMLFNCSYSIM 112 >gi|16797938|gb|AAL29221.1| NADH dehydrogenase subunit 6 [Limosa lapponica] Length = 173 Score = 39.2 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A V G + LG FV+++ +VY+G + Sbjct: 4 FVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97 +V F++ + + A + G+ F Sbjct: 64 LVVFVYSVSLAADPFPEAWGDWRVVGYGAGF 94 >gi|84488606|ref|YP_448944.1| NADH dehydrogenase subunit 6 [Rangifer tarandus] gi|84095029|dbj|BAE66698.1| NADH dehydrogenase subunit 6 [Rangifer tarandus] Length = 175 Score = 39.2 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G+L ++VC Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFMTGLLMEVVMVC 105 >gi|280978053|ref|YP_003345006.1| NADH dehydrogenase subunit 6 [Pythonichthys microphthalmus] gi|271280220|dbj|BAI53170.1| NADH dehydrogenase subunit 6 [Pythonichthys microphthalmus] Length = 173 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF M ++ V + P ++ L+ A V G+ G F++++ L++Y+G + Sbjct: 4 FLFLFMVMLVLGVLGVASNPAPYFAALGLVLAAVGGCGILAGYGGSFISLVLLLIYLGGM 63 Query: 67 IVFFLF--IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +V F + + + +G F +L L Sbjct: 64 LVVFAYSAALAAEPYPEAWGDWSVLGHAVGYLFFCLLGVGLFY 106 >gi|11643473|gb|AAG39597.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] Length = 172 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 2/105 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +V F++ + + E G +G F + + S Sbjct: 64 LVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGMVIVVGAVVSG 106 >gi|294054917|ref|YP_003548575.1| NADH/Ubiquinone/plastoquinone (complex I) [Coraliomargarita akajimensis DSM 45221] gi|293614250|gb|ADE54405.1| NADH/Ubiquinone/plastoquinone (complex I) [Coraliomargarita akajimensis DSM 45221] Length = 777 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 M +IS+ +VV + S+ L A +F+ GA +A+ L+V V V FLF Sbjct: 612 VMMLISTLVVVASNDFTTSLVGLGMIGFGVALIFVYYGAPDLAITQLLVETLTV-VLFLF 670 Query: 73 IIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNFMVFSAE----GELSRLVFK 127 ++ L +++ R + R + + G L L++ A + + S K Sbjct: 671 VVFRLPAMKQLSSSRVRVRDAILALSFGGLMTLLVLKAVSIQFHHPISEQLAQWSYPEAK 730 Query: 128 GNNVENI 134 G NV N+ Sbjct: 731 GKNVVNV 737 >gi|11643403|gb|AAG39562.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + A G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYSVSLAADPYPEAWGDWGVVEYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120 >gi|189095611|ref|YP_001936249.1| NADH dehydrogenase subunit 6 [Syrmaticus soemmerringi ijimae] gi|171702161|dbj|BAG16195.1| NADH dehydrogenase subunit 6 [Syrmaticus soemmerringi ijimae] Length = 173 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG F+++ +VY+G Sbjct: 2 TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F++ + + A + +G +L + S F+ F Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR--VVGYGLGFVLVVCVGAFLSGFVDF 110 >gi|16797927|gb|AAL29216.1| NADH dehydrogenase subunit 6 [Numenius madagascariensis] Length = 173 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLLLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|145315426|gb|ABP62987.1| NADH dehydrogenase subunit 6 [Osteolaemus tetraspis] Length = 175 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F++ + +IS LV Y V SL+FA + + L + G F+ ++ L++Y+G + Sbjct: 4 MFFILCCLMMISVVLVAFGATIHYGVVSLLFATMLGSSLLVAEGGSFMPLVVLLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102 +V F F + D L + L Sbjct: 64 LVVFAFCVGFTDDKYCEFWGSGGSKGLAYIWWAGLG 99 >gi|56548717|ref|YP_161245.1| NADH dehydrogenase subunit 6 [Perameles gunnii] gi|56398558|emb|CAG26431.1| NADH dehydrogenase subunit 6 [Perameles gunnii] Length = 166 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +P+Y SL+ + + + LG F+ ++ +VY Sbjct: 1 MKMMIIFLFSVLLIFGFVAFASKPSPVYGGLSLVVSGGVGCAIVVSLGNTFLGLVMFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + M + ++G+ + ++ + + + E E+S Sbjct: 61 LGGMLVVFGYTAAMATEEYPET-------WVGNMVAFSMFVVTLLIEVVWYITTGEVEMS 113 Query: 123 RLV 125 V Sbjct: 114 TAV 116 >gi|5835231|ref|NP_008275.1|ND6_10703 NADH dehydrogenase subunit 6 [Protopterus dolloi] gi|1161215|gb|AAC38032.1| NADH dehydrogenase subunit 6 [Protopterus dolloi] Length = 170 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 43/122 (35%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S F+ ++S V + P ++ L+F G+ + LG F+++I ++Y+G Sbjct: 2 SFIFFTLLVGFLVSLIGVASNPAPYFAALGLVFGAGIGCGILIWLGNSFLSLILFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + +G + VF + L Sbjct: 62 GMLVVFGYSAALAAEPYPGGWEDWSVLLYSLLLLGAGVGIGWAVVGGWDVFDSASFLGGT 121 Query: 125 VF 126 + Sbjct: 122 IL 123 >gi|283049341|gb|ADB07114.1| NADH dehydrogenase subunit 6 [Gallus gallus] Length = 173 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F++ + + A + +G +L + V F+ F Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR--VVGYGLGFVLVVWMGVVLGGFVDF 110 >gi|188039024|ref|YP_001905907.1| NADH dehydrogenase subunit 6 [Ophiura albida] gi|183013991|emb|CAL50584.1| NADH dehydrogenase subunit 6 [Ophiura albida] Length = 158 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 39/91 (42%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L + ++ S ++V +P + +F ++ + + G F ++ ++VYVG ++V Sbjct: 4 LIVMIILLGSLVLVFSGSPYFGLFGVLIQSIGFSLYLFFCGLPFFGLLMVLVYVGGMMVV 63 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI 100 FLF ++ + F + + Sbjct: 64 FLFSTILSAERYPGTSWSEFFVFSLCLILLV 94 >gi|11643461|gb|AAG39591.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643463|gb|AAG39592.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643465|gb|AAG39593.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643467|gb|AAG39594.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643469|gb|AAG39595.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643471|gb|AAG39596.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643475|gb|AAG39598.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643477|gb|AAG39599.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643479|gb|AAG39600.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643481|gb|AAG39601.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643483|gb|AAG39602.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643485|gb|AAG39603.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643487|gb|AAG39604.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643489|gb|AAG39605.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643491|gb|AAG39606.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643493|gb|AAG39607.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643495|gb|AAG39608.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643497|gb|AAG39609.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643499|gb|AAG39610.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643501|gb|AAG39611.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643503|gb|AAG39612.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643505|gb|AAG39613.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643507|gb|AAG39614.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643509|gb|AAG39615.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643511|gb|AAG39616.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643513|gb|AAG39617.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643515|gb|AAG39618.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643517|gb|AAG39619.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643519|gb|AAG39620.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643521|gb|AAG39621.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643523|gb|AAG39622.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643525|gb|AAG39623.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643527|gb|AAG39624.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643529|gb|AAG39625.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643531|gb|AAG39626.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] gi|11643533|gb|AAG39627.1| NADH dehydrogenase subunit 6 [Phylloscopus plumbeitarsus] Length = 172 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + A G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYSVSLAADPYPEAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120 >gi|5835021|ref|NP_007080.1|ND6_10458 NADH dehydrogenase subunit 6 [Halichoerus grypus] gi|585600|sp|P38603|NU6M_HALGR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|414769|emb|CAA50888.1| NADH-ubiquinone oxidoreductase subunit 6 [Halichoerus grypus] Length = 175 Score = 39.2 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105 >gi|291612301|ref|YP_003540733.1| NADH dehydrogenase subunit 6 [Lophophorus lhuysii] gi|259019850|gb|ACV90059.1| NADH dehydrogenase subunit 6 [Lophophorus lhuysii] Length = 173 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F F ++ V + +P Y V L+ A V+ G + LG F+++ +VY+G Sbjct: 2 TYFMIFLGFCFMLGVLAVASNPSPYYGVVGLVLASVDGCGWLVSLGVSFISLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|60685824|gb|AAX34926.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685829|gb|AAX34930.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685834|gb|AAX34934.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685839|gb|AAX34938.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685844|gb|AAX34942.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685849|gb|AAX34946.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685854|gb|AAX34950.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685859|gb|AAX34954.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685864|gb|AAX34958.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685869|gb|AAX34962.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685874|gb|AAX34966.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685879|gb|AAX34970.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686214|gb|AAX35238.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686239|gb|AAX35258.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686244|gb|AAX35262.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686249|gb|AAX35266.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686254|gb|AAX35270.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686259|gb|AAX35274.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686264|gb|AAX35278.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686269|gb|AAX35282.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686274|gb|AAX35286.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686279|gb|AAX35290.1| NADH dehydrogenase subunit 6 [Elephas maximus] Length = 183 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 VM + F + S + ++ + +P+Y SL+ + G+ + G F+ ++ +V Sbjct: 8 VMMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMSSGGSFLGLVVFLV 66 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 Y+G ++V F + I M + L +F +G+L +V Sbjct: 67 YLGGMMVVFGYTIAMATEEYPETWGSNV-VVLSAFLVGLLMEVFMVVWL 114 >gi|21306216|gb|AAM45914.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] gi|21306218|gb|AAM45915.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] gi|21306220|gb|AAM45916.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] gi|21306222|gb|AAM45917.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] gi|21306224|gb|AAM45918.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] gi|21306226|gb|AAM45919.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] Length = 156 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 1 TYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 60 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A + G FI Sbjct: 61 GMLVVFVYSVSLAADPFPEAWGDWRVLGYGIGFI 94 >gi|60685279|gb|AAX34490.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685284|gb|AAX34494.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685289|gb|AAX34498.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685294|gb|AAX34502.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685299|gb|AAX34506.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685304|gb|AAX34510.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685309|gb|AAX34514.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685314|gb|AAX34518.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685319|gb|AAX34522.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685324|gb|AAX34526.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685329|gb|AAX34530.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685334|gb|AAX34534.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685339|gb|AAX34538.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685344|gb|AAX34542.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685349|gb|AAX34546.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685354|gb|AAX34550.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685359|gb|AAX34554.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685364|gb|AAX34558.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685369|gb|AAX34562.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685374|gb|AAX34566.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685379|gb|AAX34570.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685384|gb|AAX34574.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685389|gb|AAX34578.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685394|gb|AAX34582.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685399|gb|AAX34586.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685884|gb|AAX34974.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685889|gb|AAX34978.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685894|gb|AAX34982.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685899|gb|AAX34986.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685904|gb|AAX34990.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685909|gb|AAX34994.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685914|gb|AAX34998.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685919|gb|AAX35002.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685924|gb|AAX35006.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685929|gb|AAX35010.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685934|gb|AAX35014.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685939|gb|AAX35018.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685944|gb|AAX35022.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685949|gb|AAX35026.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685954|gb|AAX35030.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685959|gb|AAX35034.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685964|gb|AAX35038.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685969|gb|AAX35042.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685974|gb|AAX35046.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685979|gb|AAX35050.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685984|gb|AAX35054.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685989|gb|AAX35058.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685994|gb|AAX35062.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685999|gb|AAX35066.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686004|gb|AAX35070.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686009|gb|AAX35074.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686014|gb|AAX35078.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686019|gb|AAX35082.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686024|gb|AAX35086.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686029|gb|AAX35090.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686034|gb|AAX35094.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686039|gb|AAX35098.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686044|gb|AAX35102.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686049|gb|AAX35106.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686054|gb|AAX35110.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686059|gb|AAX35114.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686064|gb|AAX35118.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686069|gb|AAX35122.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686074|gb|AAX35126.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686079|gb|AAX35130.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686084|gb|AAX35134.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686089|gb|AAX35138.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686094|gb|AAX35142.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686099|gb|AAX35146.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686104|gb|AAX35150.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686109|gb|AAX35154.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686114|gb|AAX35158.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686119|gb|AAX35162.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686124|gb|AAX35166.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686129|gb|AAX35170.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686134|gb|AAX35174.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686139|gb|AAX35178.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686144|gb|AAX35182.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686149|gb|AAX35186.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686154|gb|AAX35190.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686159|gb|AAX35194.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686164|gb|AAX35198.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686169|gb|AAX35202.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686174|gb|AAX35206.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686179|gb|AAX35210.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686184|gb|AAX35214.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686189|gb|AAX35218.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686194|gb|AAX35222.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686199|gb|AAX35226.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686204|gb|AAX35230.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686209|gb|AAX35234.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686219|gb|AAX35242.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686224|gb|AAX35246.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686229|gb|AAX35250.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60686234|gb|AAX35254.1| NADH dehydrogenase subunit 6 [Elephas maximus] Length = 183 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 VM + F + S + ++ + +P+Y SL+ + G+ + G F+ ++ +V Sbjct: 8 VMMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMSSGGSFLGLVVFLV 66 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 Y+G ++V F + I M + L +F +G+L +V Sbjct: 67 YLGGMMVVFGYTIAMATEEYPETWGSNV-VVLSAFLVGLLMEVFMVVWL 114 >gi|11643413|gb|AAG39567.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides ludlowi] Length = 172 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + A G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYSVSLAADPYPEAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120 >gi|255643831|gb|ACU22297.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ ++N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|240266670|ref|YP_002971046.1| NADH dehydrogenase subunit 6 [Dendrocygna javanica] gi|209887475|gb|ACI95091.1| NADH dehydrogenase subunit 6 [Dendrocygna javanica] Length = 173 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 44/101 (43%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + + V + +P Y V L+ A V G L LG F++++ +VY+G + Sbjct: 4 FVFFLGVCFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFISLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +V F++ + + A + + + ++ A ++ Sbjct: 64 LVVFVYSVALAAEPFPKAWGDWRVVGHAAALVVVVFAGILY 104 >gi|115494703|ref|YP_778732.1| NADH dehydrogenase subunit 6 [Phocarctos hookeri] gi|115344869|emb|CAJ56921.1| NADH dehydrogenase subunit 6 [Phocarctos hookeri] Length = 175 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYFVFILSIVFVVGFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G +++ F + M + LG+F G+L+ L+ C Sbjct: 61 LGGMLIVFGYTTAMATEQYPEV-WVSNKAVLGAFIAGLLSELLLAC 105 >gi|13898633|gb|AAK48836.1| NADH dehydrogenase subunit 6 [Amazona ochrocephala auropalliata] Length = 172 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++++ LV + +P Y V L+F V G + LG FV+++ +VY+G Sbjct: 2 TYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F++ + + F ++ LIV + Sbjct: 62 GMLVVFVYSVSLAADPFPQVWGGWHTMGCVLGFAFVVGTGLIVWGWGDGGLGVGVVDNMG 121 Query: 125 VFKG 128 VF G Sbjct: 122 VFFG 125 >gi|19481560|gb|AAL88852.1|AF407119_1 NADH dehydrogenase subunit 6 [Ploceus ocularis] Length = 159 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + D E G+ + ++ ++ AS +V S + Sbjct: 60 LGGMLVVFVYSVSLAADPYPEAWTDWGVVGYGFGLGLVVMIGLVVGGASGVLVDSGTADS 119 Query: 122 SRLVFK 127 + L+ Sbjct: 120 ASLLPA 125 >gi|1304730|gb|AAA99089.1| NADH dehydrogenase subunit 6 [Grus rubicunda] gi|224504162|gb|ACN53734.1| NADH dehydrogenase subunit 6 [Grus rubicunda] Length = 173 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|11643427|gb|AAG39574.1| NADH dehydrogenase subunit 6 [Phylloscopus trochiloides trochiloides] Length = 172 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLSLCFALGGLAVASNPSPYYGVLGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 +V F++ + + A G F +G++ V + F V G ++ + Sbjct: 64 LVVFVYSVSLAADPYPKAWGDWGVVGYG-FGMGMVIVVGAVVSGVFEVLVDGGTVNNV 120 >gi|66276029|ref|YP_238280.1| NADH dehydrogenase subunit 6 [Branta canadensis] gi|63004247|gb|AAY25515.1| NADH dehydrogenase subunit 6 [Branta canadensis] Length = 173 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + + V + +P Y V L+ A V G L LG F+A++ +VY+G Sbjct: 2 AYFMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFLALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR 86 >gi|283096357|ref|YP_003359190.1| NADH dehydrogenase subunit 6 [Nyctereutes procyonoides] gi|281371704|gb|ADA63636.1| NADH dehydrogenase subunit 6 [Nyctereutes procyonoides] Length = 175 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S VT +PIY LI + + G F+ ++ ++Y Sbjct: 1 MTTYIVFILSIVFVMSFVGFVTKPSPIYGGLVLIISGGIGCAIVFNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + + ++ + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYT-TAMAMEQYPEVWVSNKAVLAAFITGLLSELLTAC 105 >gi|255643615|gb|ACU22135.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ ++N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|1171840|sp|P43197|NU6M_CEPCO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394666|emb|CAA52123.1| NADH dehydrogenase subunit 6 [Cepphus columba] Length = 173 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVVFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 ++V F++ + + A G+ F+ +L ++ Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWGVVGYGASFVVVLMVGGVIGGFVGGW 111 >gi|115494773|ref|YP_778849.1| NADH dehydrogenase subunit 6 [Cystophora cristata] gi|115344995|emb|CAJ57038.1| NADH dehydrogenase subunit 6 [Cystophora cristata] Length = 175 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105 >gi|308745803|ref|YP_003934222.1| NADH dehydrogenase subunit 6 [Chrysolophus pictus] gi|238550661|gb|ACR44507.1| NADH dehydrogenase subunit 6 [Chrysolophus pictus] gi|307133857|gb|ADN32867.1| NADH dehydrogenase subunit 6 [Chrysolophus pictus] Length = 173 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 43/105 (40%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG F+++ +VY+G Sbjct: 2 TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++V F++ + + A + G F+ ++ + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCVGAFLAG 106 >gi|148298643|ref|YP_001249295.1| NADH dehydrogenase subunit 6 [Ailuropoda melanoleuca] gi|145208514|gb|ABP38221.1| NADH dehydrogenase subunit 6 [Ailuropoda melanoleuca] gi|155368553|emb|CAM98570.1| NADH dehydrogenase subunit 6 [Ailuropoda melanoleuca] gi|195182386|emb|CAQ68441.1| NADH dehydrogenase subunit 6 [Ailuropoda melanoleuca] Length = 175 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVSILSIVFVVSFAGFSSKPSPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L VC Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WLSNKAVLGAFIVGLLSELLAVC 105 >gi|56548689|ref|YP_161219.1| NADH dehydrogenase subunit 6 [Pseudocheirus peregrinus] gi|56398530|emb|CAG26405.1| NADH dehydrogenase subunit 6 [Pseudocheirus peregrinus] Length = 167 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 42/107 (39%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +P+Y SL+ + + + L F+ +I ++Y Sbjct: 1 MKMMVIFLFSILLIFGFVAFASKPSPVYGGLSLVVSGGLGCAIVVSLEDTFLGLIVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + M + + F + V A Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNSVALSMLLFALLAEVMWFVVA 107 >gi|34106698|gb|AAQ62350.1| NADH dehydrogenase subunit 6 [Vidua fischeri] gi|34106700|gb|AAQ62351.1| NADH dehydrogenase subunit 6 [Vidua fischeri] Length = 159 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V F++ + + E G +G F L + + S Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPETWTDWGVVGYGFGMGLVVMVGLIVSG 106 >gi|1304732|gb|AAA99090.1| NADH dehydrogenase subunit 6 [Grus rubicunda] Length = 173 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|159524383|ref|YP_001542766.1| NADH dehydrogenase subunit 6 [Helarctos malayanus] gi|121592342|gb|ABM63276.1| NADH dehydrogenase subunit 6 [Helarctos malayanus] gi|195182447|emb|CAQ68493.1| NADH dehydrogenase subunit 6 [Helarctos malayanus] Length = 175 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVVFVMGFVGFSSKPSPIYGGLVLIISGGAGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105 >gi|38707596|ref|NP_944735.1| NADH dehydrogenase subunit 6 [Pontoporia blainvillei] gi|38602555|emb|CAD88012.1| NADH6 protein [Pontoporia blainvillei] Length = 173 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++S V + +PIY LI G+ LG F+ ++ ++Y Sbjct: 1 MMIYIAFIMSIIFVLSLVGVSSKPSPIYGGVGLIVGGAMGCGIVFSLGGPFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V +F E E + F+ LA E +V V E S Sbjct: 61 LGGMLV--VFGYTTAMATEEYPEAWISNKIVLGSFVLGLAVEFLVVGYVLGVEGETAEFS 118 Query: 123 RL 124 L Sbjct: 119 GL 120 >gi|9230600|gb|AAF85926.1|AF171659_2 NADH dehydrogenase subunit 6 [Carduelis hornemanni] Length = 172 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + S V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGVCFALGSLAVASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|304365557|gb|ADM26363.1| NADH dehydrogenase subunit 6 [Geococcyx californianus] Length = 173 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G + Sbjct: 4 FVFFLGMFFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F++ + + A + Sbjct: 64 LVVFVYSVSLAAEPFPEAWGSWQ 86 >gi|126792910|gb|ABO27311.1| NADH dehydrogenase subunit 6 [Rhynchopsitta pachyrhyncha] Length = 170 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G + Sbjct: 4 FLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +V F++ + + A + + I A + Sbjct: 64 LVVFVYSVSLAADPFPQAWGGRYVVGYALGLVPIGAGLAVWGWGG 108 >gi|21306214|gb|AAM45913.1| NADH dehydrogenase subunit 6 [Chalcites lucidus plagosus] Length = 156 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 1 TYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 60 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A + G FI Sbjct: 61 GMLVVFVYSVSLAADPFPEAWGDWRVLGYGIGFI 94 >gi|107122084|ref|YP_626378.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|93140475|sp|Q2I3G3|NU6M_ELEMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|83415402|gb|ABC17902.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|148283475|gb|ABQ57322.1| NADH dehydrogenase subunit 6 [Elephas maximus] Length = 175 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 2/108 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + S + ++ + +P+Y SL+ + G+ + G F+ ++ +VY Sbjct: 1 MMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMSSGGSFLGLVVFLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + I M + L +F +G+L +V Sbjct: 60 LGGMMVVFGYTIAMATEEYPETWGSNV-VVLSAFLVGLLMEVFMVVWL 106 >gi|239997619|gb|ACS37129.1| NADH dehydrogenase subunit 6 [Microcaecilia sp. PZ-2009] Length = 166 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + V + +P Y+ F L+ + + G F++++ ++Y Sbjct: 1 MSYIVFMGL-LGLVFGMVGVASNPSPYYAAFGLVLGAASGCVVLFSFGTTFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A F F+ G+L L + Sbjct: 60 LGGMMVVFAYSAAMASEPYPEAWGSLSVIFYLVFYCGVLIIGLGLV 105 >gi|242097389|emb|CAY40189.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097403|emb|CAY40216.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097627|emb|CAY40640.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] Length = 175 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ +VY Sbjct: 1 MMMYIVFILSTIFVMGFVGFSSKPSPIYGGLVLIVSGGVGCGIVLNFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLIAC 105 >gi|17488501|ref|NP_510980.1|ND6_15877 NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|17298333|gb|AAL38124.1|AF283503_12 NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643591|gb|ACU22117.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643595|gb|ACU22120.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643599|gb|ACU22123.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643603|gb|ACU22126.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643607|gb|ACU22129.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643611|gb|ACU22132.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643619|gb|ACU22138.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643623|gb|ACU22141.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643627|gb|ACU22144.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643631|gb|ACU22147.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643651|gb|ACU22162.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643655|gb|ACU22165.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643659|gb|ACU22168.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643663|gb|ACU22171.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643667|gb|ACU22174.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643675|gb|ACU22180.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643679|gb|ACU22183.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643695|gb|ACU22195.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643723|gb|ACU22216.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643727|gb|ACU22219.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643739|gb|ACU22228.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643743|gb|ACU22231.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643747|gb|ACU22234.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643751|gb|ACU22237.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643755|gb|ACU22240.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643759|gb|ACU22243.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643763|gb|ACU22246.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643767|gb|ACU22249.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643771|gb|ACU22252.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643775|gb|ACU22255.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643779|gb|ACU22258.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643783|gb|ACU22261.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643787|gb|ACU22264.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643791|gb|ACU22267.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643795|gb|ACU22270.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643799|gb|ACU22273.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643803|gb|ACU22276.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643807|gb|ACU22279.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643811|gb|ACU22282.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643815|gb|ACU22285.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643823|gb|ACU22291.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643827|gb|ACU22294.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643839|gb|ACU22303.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643843|gb|ACU22306.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643847|gb|ACU22309.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643859|gb|ACU22318.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643863|gb|ACU22321.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643867|gb|ACU22324.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643871|gb|ACU22327.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643883|gb|ACU22336.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643887|gb|ACU22339.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643891|gb|ACU22342.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643895|gb|ACU22345.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643899|gb|ACU22348.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643903|gb|ACU22351.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643939|gb|ACU22378.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643947|gb|ACU22384.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643951|gb|ACU22387.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643955|gb|ACU22390.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643959|gb|ACU22393.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643963|gb|ACU22396.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643967|gb|ACU22399.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643971|gb|ACU22402.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643975|gb|ACU22405.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643979|gb|ACU22408.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643983|gb|ACU22411.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643991|gb|ACU22417.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644007|gb|ACU22429.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644027|gb|ACU22444.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644075|gb|ACU22480.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644083|gb|ACU22486.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644087|gb|ACU22489.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644091|gb|ACU22492.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644095|gb|ACU22495.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644099|gb|ACU22498.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644111|gb|ACU22507.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644115|gb|ACU22510.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644127|gb|ACU22519.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644135|gb|ACU22525.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644139|gb|ACU22528.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644143|gb|ACU22531.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644147|gb|ACU22534.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644155|gb|ACU22540.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644163|gb|ACU22546.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644167|gb|ACU22549.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644171|gb|ACU22552.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644175|gb|ACU22555.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644183|gb|ACU22561.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644187|gb|ACU22564.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644191|gb|ACU22567.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644195|gb|ACU22570.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644199|gb|ACU22573.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ ++N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|28975387|gb|AAO61770.1| NADH dehydrogenase subunit 6 [Accipiter nisus nisus] Length = 172 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ V GL + LG FVA++ +VY+G Sbjct: 2 AYFVLFLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGLLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++V F++ + M + G + +L ++ Sbjct: 62 GMLVVFVYSVCMAADPFPETWGDWRVLGYGVVMVLMLIVGVVFVG 106 >gi|195661140|ref|YP_002117865.1| NADH dehydrogenase subunit 6 [Epinephelus coioides] gi|153973778|gb|ABS54447.1| NADH dehydrogenase subunit 6 [Epinephelus coioides] Length = 173 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 9/115 (7%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F + I+ + V + +P + L+ G+ + G+ F+A+I + Sbjct: 1 MCFTVVCFLIC---WIVGAIAVASNPSPFFGALGLVMVAGVGCGILVEYGSPFLALILFL 57 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 +Y+G ++V F + + AEP + + + + ++V A M + Sbjct: 58 IYLGGMLVVFAYSAAL------AAEPYPESWVNPAVVVYMCCYTVVVLAGANMFW 106 >gi|40805121|ref|NP_955690.1| NADH dehydrogenase subunit 6 [Nannospalax ehrenbergi] gi|40644204|emb|CAC95221.1| NADH dehydrogenase subunit 6 [Nannospalax ehrenbergi] Length = 174 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 1/103 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + +P+Y LI G+ L G +F+ ++ ++Y+G ++V Sbjct: 6 FIMSVALVTCFIGLSIKPSPVYGGLCLIVGGCVGCGIVLSFGGQFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + M + + LG +GI+ L+V Sbjct: 66 VFGYTAAMASEEYPESWG-SNWLVLGLLVVGIIMELLLVFWLG 107 >gi|21449985|ref|NP_659324.1|ND6_16493 NADH dehydrogenase subunit 6 [Manis tetradactyla] gi|21425392|emb|CAD13273.1| NADH dehydrogenase subunit 6 [Manis tetradactyla] Length = 175 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S V + +P+Y SLI A G+ + G F+ ++ ++Y Sbjct: 1 MMTYVMFILSIIFVLSFLGVSSKPSPVYGGLSLIVAGGVGCGVVVNFGGPFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + M A ++ + + +V M+F +GE Sbjct: 61 LGGMLVVFGYTAAM-------AIEEYPEAWVSNIVVLGAFVIGMVMELLLMLFMVKGEGL 113 Query: 123 RLVFKGNN 130 + + NN Sbjct: 114 GVAVEFNN 121 >gi|1171847|sp|P43203|NU6M_PTYAL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394682|emb|CAA52129.1| NADH dehydrogenase subunit 6 [Ptychoramphus aleuticus] Length = 173 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVA 84 ++V F++ + + A Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81 >gi|290573382|gb|ADD46503.1| NADH dehydrogenase subunit 6 [Rattus leucopus] Length = 172 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLAGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ FF+ L EL+V Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELVV 102 >gi|5834993|ref|NP_008145.1|ND6_10422 NADH dehydrogenase subunit 6 [Xenopus laevis] gi|128824|sp|P03927|NU6M_XENLA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|807693|gb|AAA66469.1| ORF 6 [Xenopus laevis] Length = 170 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 48/116 (41%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + ++ V + +P Y+ L+ A + + G+ F++++ ++Y+G ++V F + Sbjct: 11 VLVLGLVAVASNPSPFYAALGLVLAAGAGCLVIVSFGSSFLSIVLFLIYLGGMLVVFAYS 70 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 E ++ + IG+L L + + EL V +G+ Sbjct: 71 AARAKPYPEAWGSWSVVFYVLVYLIGVLVWYLFLGGVEVDGMNKSSELGSYVMRGD 126 >gi|283048893|gb|ADB06698.1| NADH dehydrogenase subunit 6 [Gallus gallus] Length = 173 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ ++ +++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGCGLGFVLVVWMGVVLGGL 107 >gi|223976118|ref|YP_002600881.1| NADH dehydrogenase subunit 6 [Antilope cervicapra] gi|223972287|dbj|BAH23326.1| NADH dehydrogenase subunit 6 [Antilope cervicapra] Length = 175 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVVGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKAVLGAFVTGLLMEFLMV 104 >gi|218157314|ref|YP_002364467.1| NADH dehydrogenase subunit 6 [Geococcyx californianus] gi|166093109|gb|ABY82541.1| NADH dehydrogenase subunit 6 [Geococcyx californianus] Length = 173 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G + Sbjct: 4 FVFFLGMCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F++ + + A + Sbjct: 64 LVVFVYSVSLAAEPFPEAWGSWQ 86 >gi|255643851|gb|ACU22312.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643855|gb|ACU22315.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ ++N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|195661126|ref|YP_002117878.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|195182371|emb|CAQ68428.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097235|emb|CAY39899.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097263|emb|CAY39952.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097277|emb|CAY39978.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097291|emb|CAY40005.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097431|emb|CAY40268.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097445|emb|CAY40295.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097459|emb|CAY40324.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097473|emb|CAY40350.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097487|emb|CAY40376.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097501|emb|CAY40402.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097515|emb|CAY40429.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097613|emb|CAY40614.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] Length = 175 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ +VY Sbjct: 1 MMMYIVFILSTIFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105 >gi|156766032|ref|YP_001434587.1| NADH dehydrogenase subunit 6 [Asymmetron sp. A TK-2007] gi|156713119|dbj|BAF76618.1| NADH dehydrogenase subunit 6 [Asymmetron sp. A TK-2007] Length = 167 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 46/103 (44%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L SFM +++S +V+ ++P + ++ F + + + + F AMI +++Y+G ++V Sbjct: 5 LLSFMILLTSMMVIRAKSPYFGALAMAFLSLLISIMMFQMNLIFSAMILVLIYLGGMLVV 64 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F++ I + + ++ + +F Sbjct: 65 FVYSTAYSADLIPLPMNLTLTVLVALIGTTLITLSPLSTMESF 107 >gi|5081447|gb|AAD39386.1|AF123906_1 NADH dehydrogenase subunit 6 [Grus grus] gi|5081449|gb|AAD39387.1|AF123907_1 NADH dehydrogenase subunit 6 [Grus monacha] gi|224504106|gb|ACN53682.1| NADH dehydrogenase subunit 6 [Grus grus] gi|224504120|gb|ACN53695.1| NADH dehydrogenase subunit 6 [Grus monacha] Length = 173 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|255643819|gb|ACU22288.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643835|gb|ACU22300.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ ++N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|255643635|gb|ACU22150.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643639|gb|ACU22153.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643643|gb|ACU22156.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643647|gb|ACU22159.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643671|gb|ACU22177.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643683|gb|ACU22186.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643687|gb|ACU22189.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643691|gb|ACU22192.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643699|gb|ACU22198.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ ++N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|255643735|gb|ACU22225.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643907|gb|ACU22354.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643911|gb|ACU22357.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643919|gb|ACU22363.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643923|gb|ACU22366.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643927|gb|ACU22369.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643931|gb|ACU22372.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 40/95 (42%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGGGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ ++N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|213136093|gb|ACJ43646.1| NADH dehydrogenase subunit 6 [Euproctus montanus] Length = 172 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 45/101 (44%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LF F +I V + +P ++ F LI A ++ L + G F++++ +++Y+G ++V Sbjct: 6 FLFMFGILIGLVAVASNPSPYFAAFGLILASISGCCLLVDFGISFLSIVLVLIYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 F + + A ++ +L ++ Sbjct: 66 VFAYSASLAAEPYPEAWGSWSVVIYVCIYLVLLMLGWMLFG 106 >gi|115494633|ref|YP_778914.1| NADH dehydrogenase subunit 6 [Pusa sibirica] gi|115345079|emb|CAJ57116.1| NADH dehydrogenase subunit 6 [Pusa sibirica] gi|115345093|emb|CAJ57129.1| NADH dehydrogenase subunit 6 [Pusa sibirica] Length = 175 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105 >gi|71658077|ref|YP_272084.1| NADH dehydrogenase subunit 6 [Gallus gallus bankiva] gi|71040234|dbj|BAE16090.1| NADH dehydrogenase subunit 6 [Gallus gallus bankiva] Length = 173 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ ++ +++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGNWRVVGYGLGFVLVVWMGVVLGGL 107 >gi|302201575|gb|ADL09134.1| NADH dehydrogenase subunit 6 [Aceros corrugatus] Length = 173 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F F ++ V + +P Y V L+ V G L LG F+A++ +VY+G + Sbjct: 4 FVLFFGLAFVLGGLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGVSFIALVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRK 88 +V F++ + + A + Sbjct: 64 LVVFVYSVALAADPFPEAWGSR 85 >gi|289183247|ref|YP_003457227.1| NADH dehydrogenase subunit 6 [Echinocardium cordatum] gi|288995562|emb|CBH40162.1| NADH dehydrogenase subunit 6 [Echinocardium cordatum] Length = 162 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 12/159 (7%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ S LV +P YS L+ V+ + +LG FVA++ L+VY+G ++V Sbjct: 4 YLCLVFMLVGSTLVFYSLSPYYSALGLVVVSVSGCVVLGVLGGSFVALVLLLVYMGGMLV 63 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F + + +R S ++ L F+ F+ + + F+ Sbjct: 64 VFAY----------SSAISAERFPSVSNLSEVVGLSLFFSTWVFVSFNDLNDTNNNFFQL 113 Query: 129 NNVENI--GKVLYTQYAYPLEISGFILLLSMIGAIVLML 165 + E++ Y + + + FILL++++GA+++ Sbjct: 114 ISGESVLGSSSFYNEGGALVIVGVFILLVALVGALIISR 152 >gi|189095541|ref|YP_001936288.1| NADH dehydrogenase subunit 6 [Syrmaticus reevesii] gi|171702175|dbj|BAG16208.1| NADH dehydrogenase subunit 6 [Syrmaticus reevesii] Length = 173 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 44/106 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ A V G + LG F+++ +VY+G Sbjct: 2 TYFVILLGVCFMLGVLAVASNPSPYYGVVGLVLASVIGCGWLVSLGVSFISLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ ++ + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVCIGAFLAGL 107 >gi|21306244|gb|AAM45928.1| NADH dehydrogenase subunit 6 [Chrysococcyx flavigularis] Length = 156 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG F++++ +VY+G Sbjct: 1 TYFVLFLGGCFVLGGLAVASNPSPYYGVVGLVLASVTGCGWLLSLGVSFMSLVLFMVYLG 60 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 61 GMLVVFVYSVSLAADPFPEAWGDWR 85 >gi|289183289|ref|YP_003457266.1| NADH dehydrogenase subunit 6 [Holothuria forskali] gi|288995576|emb|CBH40175.1| NADH dehydrogenase subunit 6 [Holothuria forskali] Length = 162 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FYLF + + S LV +P Y+ L+ + + LG F+A++ L++Y+G Sbjct: 1 MVFYLFLLLLLFGSTLVFYSLSPYYAALGLVLTSLFGCVVLSCLGLSFMALLLLLIYMGG 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF 97 ++V F++ + V + + S Sbjct: 61 MMVVFVYSSALSADRYPVVSNLGEVFIIFSLL 92 >gi|221664573|gb|ACM24448.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] Length = 172 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FVLSSLFLVGCLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + M + LG +G++ ++C N+ Sbjct: 66 VFGYTTAMATEEYPETWG-SNWLILGFLVLGVIMEVFLICVLNY 108 >gi|212725604|ref|YP_002317348.1| NADH dehydrogenase subunit 6 [Martes zibellina] gi|211997673|gb|ACJ14800.1| NADH dehydrogenase subunit 6 [Martes zibellina] Length = 177 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WASNKAVLGAFIVGLLSELLTAC 105 >gi|71657983|ref|YP_272123.1| NADH dehydrogenase subunit 6 [Gallus sonneratii] gi|71040276|dbj|BAE16129.1| NADH dehydrogenase subunit 6 [Gallus sonneratii] Length = 173 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGICFVLGILAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F++ + + A + +G +L + V F+ F Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR--VVGYGLSFVLVVWMGVVLGGFVDF 110 >gi|327492707|ref|YP_004347598.1| NADH dehydrogenase subunit 6 [Tetractenos glaber] gi|327392600|dbj|BAK10027.1| NADH dehydrogenase subunit 6 [Tetractenos glaber] Length = 173 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 L F L + ++V NP Y VFSL+ + G+ +L G F++++ L++Y+ Sbjct: 5 LVFLLLGMLV----AMIVLSMNPAPFYGVFSLVLLALYCCGVLVLHGGAFLSLVLLMIYM 60 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 G ++V F++ L D + P + L ++ + F G Sbjct: 61 GGMLVVFIYS-SALSADKDPEVPSGWQAGLFFMGYFFFVFGVLYMSGGFDGEVWWGVSGE 119 Query: 124 LVFKG 128 L ++G Sbjct: 120 LDWEG 124 >gi|224588048|ref|YP_002640576.1| NADH dehydrogenase subunit 6 [Coturnicops exquisitus] gi|224471593|dbj|BAH24086.1| NADH dehydrogenase subunit 6 [Coturnicops exquisitus] Length = 173 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G + Sbjct: 4 FMLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGLSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V FL+ + + Sbjct: 64 LVVFLYSVSL 73 >gi|164519191|ref|YP_001648875.1| NADH dehydrogenase subunit 6 [Microhyla okinavensis] gi|164454437|dbj|BAF96775.1| NADH dehydrogenase subunit 6 [Microhyla okinavensis] Length = 166 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 43/104 (41%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F + ++ V + +P Y+ L+ + + + G F++++ +VY+G ++V Sbjct: 2 FFEVVLLVGFVAVASNPSPYYAALGLVIGAGSGCLMLINEGMTFLSLVLFLVYLGGMMVV 61 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 F + ++ A S ++ +L ++ F+ Sbjct: 62 FAYSAALVAEPYPEAWGSVWVLSYISSYLVVLFVGWLLWGEYFV 105 >gi|317097325|ref|YP_004123530.1| NADH dehydrogenase subunit 6 [Podoces hendersoni] gi|290758068|gb|ADD53017.1| NADH dehydrogenase subunit 6 [Podoces hendersoni] Length = 172 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 39/83 (46%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S ++ V + +P Y V L+ A + G + +G FV+++ ++VY+G + Sbjct: 4 FVLFMSLCFVLGGLAVASNPSPYYGVVGLVVASIAGCGWLVSMGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F++ + + + + Sbjct: 64 LVVFVYSVSLAADPYPESWGSWR 86 >gi|21306228|gb|AAM45920.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306230|gb|AAM45921.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306232|gb|AAM45922.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306234|gb|AAM45923.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306236|gb|AAM45924.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306238|gb|AAM45925.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306240|gb|AAM45926.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] gi|21306242|gb|AAM45927.1| NADH dehydrogenase subunit 6 [Chalcites minutillus russatus] Length = 156 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 1 TYFVLFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 60 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A + G FI Sbjct: 61 GMLVVFVYSVSLAADPFPEAWGDWRVLGYGIGFI 94 >gi|255643731|gb|ACU22222.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643915|gb|ACU22360.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644151|gb|ACU22537.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644159|gb|ACU22543.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ ++N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|47026793|gb|AAT08604.1| NADH dehydrogenase subunit 6 [Bipes biporus] Length = 172 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 46/106 (43%), Gaps = 2/106 (1%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y +++ V P ++ +L A + + + + G F+ ++ L++Y+G ++V Sbjct: 6 YFLGIGLLLAVIGVAVNPAPYFATGALAVAALFGSAILVWCGGLFLPVVLLLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFL--GSFFIGILAAELIVCASNF 112 F + I ++ + + G F+G EL++ ++ Sbjct: 66 VFAYAIALVPGERAGVYGGWQVWVWVSGLVFVGFCLVELMIGVLDW 111 >gi|77020034|ref|YP_337792.1| NADH dehydrogenase subunit 6 [Saccoglossus kowalevskii] gi|50511957|gb|AAQ92988.1| NADH dehydrogenase subunit 6 [Saccoglossus kowalevskii] Length = 159 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + +V R+P +S L+ A +G+ +L GA FV +I ++Y+G ++V Sbjct: 3 FVLCSLVFGGGVIVFMSRSPYFSALGLVLATCGLSGVLMLGGAVFVGLILFLMYLGGMLV 62 Query: 69 FFLF 72 F + Sbjct: 63 VFAY 66 >gi|255643703|gb|ACU22201.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643707|gb|ACU22204.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643711|gb|ACU22207.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643715|gb|ACU22210.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643719|gb|ACU22213.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643875|gb|ACU22330.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643879|gb|ACU22333.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643999|gb|ACU22423.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644003|gb|ACU22426.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644011|gb|ACU22432.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644015|gb|ACU22435.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644023|gb|ACU22441.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644055|gb|ACU22465.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644059|gb|ACU22468.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644063|gb|ACU22471.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644067|gb|ACU22474.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644071|gb|ACU22477.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ ++N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|124056424|ref|YP_001019022.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys] gi|124012083|gb|ABM87948.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys] Length = 175 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 40/94 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 AYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A G FI Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWGVVGYGMGFI 95 >gi|289804901|ref|ZP_06535530.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 88 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141 E+ + R+ +L+A ++ ++ + + + +G L+ Sbjct: 1 EIEQERQWLKPQVWIGPAVLSAIMLAVIVYAILGVNDQGIDGTPISA---KAVGITLFGP 57 Query: 142 YAYPLEISGFILLLS 156 Y +E++ +LL Sbjct: 58 YVLAVELASMLLLAG 72 >gi|115494815|ref|YP_778797.1| NADH dehydrogenase subunit 6 [Lobodon carcinophaga] gi|37620570|gb|AAQ95094.1| NADH dehydrogenase subunit 6 [Lobodon carcinophaga] gi|115344939|emb|CAJ56986.1| NADH dehydrogenase subunit 6 [Lobodon carcinophaga] Length = 175 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYVVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105 >gi|16356993|ref|NP_443227.1| NADH dehydrogenase subunit 6 [Chauliodus sloani] gi|16266784|dbj|BAB69986.1| NADH dehydrogenase subunit 6 [Chauliodus sloani] Length = 173 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F LF + V + P ++ L+ A G+ + G F++++ ++Y+G Sbjct: 2 TYFMSLFLITFVAGLVGVASSPAPYFAALGLVVAAGAGCGVLVGHGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V +F E R LG + +L + V E + Sbjct: 62 GMLV--VFAYSAALAAEPYPESWVDRSVLGHALVYLLGVTVSVWYLGAGWHEGSWETAEG 119 Query: 125 VFKGN 129 + + + Sbjct: 120 LKEFS 124 >gi|289183229|ref|YP_003457211.1| NADH dehydrogenase subunit 6 [Tetrabrachium ocellatum] gi|288908775|dbj|BAI77031.1| NADH dehydrogenase subunit 6 [Tetrabrachium ocellatum] Length = 194 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 9/115 (7%) Query: 21 LVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 LV+ NP ++ SL+ + G+ GA F++++ ++Y+G ++V F + + Sbjct: 16 LVILSSNPSPYFAALSLMISAGCGGGILTTYGASFLSLVLFLIYLGGMLVVFAYSAALAA 75 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133 + A L++ +++F E + + ++EN Sbjct: 76 EPYPEILE-------APLLLLSTMACLMMATLGYIMFLNETQEGPFLIPMGDLEN 123 >gi|223976132|ref|YP_002600988.1| NADH dehydrogenase subunit 6 [Giraffa camelopardalis angolensis] gi|223972315|dbj|BAH23352.1| NADH dehydrogenase subunit 6 [Giraffa camelopardalis] Length = 175 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMVYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + + I+ + LG+F +G+L L+V Sbjct: 61 LGGMMVVFGYT-TAMAIEQYPEVWAXNKTVLGAFIVGLLMEFLMV 104 >gi|226464100|ref|YP_002791222.1| NADH dehydrogenase subunit 6 [Rattus praetor] gi|160688844|gb|ABX45257.1| NADH dehydrogenase subunit 6 [Rattus praetor] Length = 172 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY F LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLAGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ FF+ L EL+V Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELVV 102 >gi|112253910|ref|YP_717164.1| hypothetical protein BrnapMp067 [Brassica napus] gi|37591112|dbj|BAC98914.1| hypothetical protein [Brassica napus] Length = 261 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 11/105 (10%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLF-----------LLLGAEFV 54 + + S A++ LV N ++SV I F + F L + +F+ Sbjct: 1 MILSVLSSPALVFGLLVTRAINFVHSVLFPIPVFCSIETFFTYFSSFPIIRKLSMKWQFL 60 Query: 55 AMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 +++ LF + L D + + F G Sbjct: 61 WFSIFKFIFSIIMIKLLFSVGYLCFDDLTRAISQFYPPISGFMGG 105 >gi|240266510|ref|YP_002970858.1| NADH dehydrogenase subunit 6 [Basiliscus vittatus] gi|239735172|dbj|BAH70393.1| NADH dehydrogenase subunit 6 [Basiliscus vittatus] Length = 174 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 3/119 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F LF F I VV+ +P + SL+ + G+ + G FV+++ ++Y Sbjct: 1 MSYLLFTLF-FCLIFGLLGVVSHPSPYFGAVSLVVSAAVGCGVLVGFGGTFVSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V F + + + G LG F+ ++ L ++ G Sbjct: 60 LGGMLVVFGYSVALASDPHPDTWGSWSVGLYLLGYVFLVVVLWGLFGDFCGLSIYGLVG 118 >gi|153124667|ref|YP_001382270.1| NADH dehydrogenase subunit 6 [Gulo gulo] gi|151416760|emb|CAM98635.1| NADH6 protein [Gulo gulo] Length = 177 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYVVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLAAC 105 >gi|52220983|ref|YP_087093.1| NADH dehydrogenase subunit 6 [Bubalus bubalis] gi|33334131|gb|AAQ12189.1| NADH dehydrogenase subunit 6 [Bubalus bubalis] gi|44894107|gb|AAS48609.1| NADH dehydrogenase subunit 6 [Bubalus bubalis] gi|51173181|gb|AAT97413.1| NADH dehydrogenase subunit 6 [Bubalus bubalis] Length = 175 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G+L L+VC Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKVVLGAFVTGLLMEFLMVC 105 >gi|68989173|ref|YP_254622.1|ND6_18490 NADH dehydrogenase subunit 6 [Thalassarche melanophrys] gi|37724198|gb|AAO18360.1| NADH dehydrogenase subunit 6 [Thalassarche melanophrys] Length = 175 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 40/94 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 AYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A G FI Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWGVVGYGMGFI 95 >gi|1171831|sp|P43191|NU6M_AETPY RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394658|emb|CAA52132.1| NADH dehydrogenase subunit 6 [Aethia pygmaea] Length = 173 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVA 84 ++V F++ + + A Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81 >gi|295641227|gb|ADG22766.1| NADH dehydrogenase subunit 6 [Melogale moschata] Length = 177 Score = 38.9 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WASNKAVLGAFIVGLLSELLTAC 105 >gi|162145729|gb|ABX82902.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097305|emb|CAY40031.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097333|emb|CAY40083.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097347|emb|CAY40109.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097361|emb|CAY40136.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097375|emb|CAY40163.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097417|emb|CAY40242.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097557|emb|CAY40510.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097571|emb|CAY40536.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097585|emb|CAY40562.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097599|emb|CAY40588.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] gi|242097655|emb|CAY40694.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] Length = 175 Score = 38.9 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ +VY Sbjct: 1 MMMYIVFILSTIFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLIAC 105 >gi|154090905|ref|YP_001403140.1| NADH dehydrogenase subunit 6 [Hippoglossus hippoglossus] gi|154090933|ref|YP_001403153.1| NADH dehydrogenase subunit 6 [Hippoglossus stenolepis] gi|153581696|emb|CAO79628.1| NADH dehydrogenase 6 [Hippoglossus hippoglossus] gi|153581710|emb|CAO79641.1| NADH dehydrogenase 6 [Hippoglossus hippoglossus] gi|153581724|emb|CAO79654.1| NADH dehydrogenase 6 [Hippoglossus hippoglossus] gi|153581738|emb|CAO79667.1| NADH dehydrogenase 6 [Hippoglossus hippoglossus] gi|153581752|emb|CAO79680.1| NADH dehydrogenase 6 [Hippoglossus stenolepis] gi|153581766|emb|CAO79693.1| NADH dehydrogenase 6 [Hippoglossus stenolepis] gi|153581780|emb|CAO79706.1| NADH dehydrogenase 6 [Hippoglossus stenolepis] gi|153581794|emb|CAO79719.1| NADH dehydrogenase 6 [Hippoglossus stenolepis] Length = 173 Score = 38.9 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 42/113 (37%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFAMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGMLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + + G + G + + + S Sbjct: 62 GMLVVFAYSAALAAEPYPESWGSWSVMVYGVVYTGGVLLVSGLFWGGWYESSW 114 >gi|115494745|ref|YP_778875.1| NADH dehydrogenase subunit 6 [Phoca groenlandica] gi|115345023|emb|CAJ57064.1| NADH dehydrogenase subunit 6 [Phoca groenlandica] Length = 175 Score = 38.9 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFVLSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105 >gi|82203|pir||A05215 hypothetical protein 138 - common tobacco chloroplast gi|225258|prf||1211235CT ORF 138 Length = 138 Score = 38.9 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 17/31 (54%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMI 57 NPIYS FSL V + ++L + FVA Sbjct: 31 NPIYSAFSLGLVLVCTSLFYILSNSYFVAAA 61 >gi|299828948|ref|YP_003734778.1| NADH dehydrogenase subunit 6 [Lycothrissa crocodilus] gi|299758201|dbj|BAJ09879.1| NADH dehydrogenase subunit 6 [Lycothrissa crocodilus] Length = 173 Score = 38.9 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 45/109 (41%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 FF ++ F+ I+ V + P ++ L+ G+ GA F+A++ ++Y+G + Sbjct: 4 FFCMWLFLLILGMVGVASNPAPYFAALGLVVVAGAGCGVLAGCGASFLAVVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 +V F++ + F++ + ++ + + + Sbjct: 64 LVVFVYSAALAAEPHPEGWWDVSVFEYVMFYLVGVGVAMVYFGNKWYGY 112 >gi|81230413|ref|YP_398765.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|93140476|sp|Q38PR1|NU6M_MAMPR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|75914862|gb|ABA29795.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|83415388|gb|ABC17889.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367508|gb|ABV45638.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367576|gb|ABV45680.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367590|gb|ABV45693.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367604|gb|ABV45706.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367632|gb|ABV45732.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367646|gb|ABV45745.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367660|gb|ABV45758.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367702|gb|ABV45797.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] Length = 175 Score = 38.9 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 42/103 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +P+Y SLI + G+ + G F+ ++ +VY+G ++V Sbjct: 6 FIMSVLYVVGFIGFSSKPSPVYGGMSLIVSGGLGCGIIMSSGGSFLGLVVFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + I M + ++ +IV + Sbjct: 66 VFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFS 108 >gi|115494857|ref|YP_778901.1| NADH dehydrogenase subunit 6 [Pusa caspica] gi|115345065|emb|CAJ57103.1| NADH dehydrogenase subunit 6 [Pusa caspica] Length = 175 Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105 >gi|56548773|ref|YP_161232.1| NADH dehydrogenase subunit 6 [Macrotis lagotis] gi|56398544|emb|CAG26418.1| NADH dehydrogenase subunit 6 [Macrotis lagotis] Length = 167 Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +P+Y SL+ + + + L F+ ++ +VY Sbjct: 1 MKMMVLFLFSILLIFGFVAFASKPSPVYGGLSLVISGGVGCAIVVSLEDTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + M + ++G+ + +++ + + S E ELS Sbjct: 61 LGGMLVVFGYTAAMATEEYPET-------WVGNVVALSMLCFVLLMEAIWYFSSGEIELS 113 Query: 123 RLVFKGNNV 131 + ++V Sbjct: 114 TSIELFDSV 122 >gi|7580475|ref|NP_037660.1|ND6_15261 NADH dehydrogenase subunit 6 [Talpa europaea] gi|6851077|emb|CAB71170.1| NADH dehydrogenase subunit 6 [Talpa europaea] Length = 175 Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTILVVSFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNYGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +G ++V +F E E + S F+ + +EL+ M Sbjct: 61 LGGMLV--VFGYTTAMAMEEYPEVWVSNKIVLSLFVLGMFSELLFVGYCVM 109 >gi|62736205|ref|YP_227593.1| NADH dehydrogenase subunit 6 [Cervus nippon yesoensis] gi|63025138|ref|YP_232844.1| NADH dehydrogenase subunit 6 [Cervus nippon centralis] gi|116014308|ref|YP_788154.1| NADH dehydrogenase subunit 6 [Cervus nippon taiouanus] gi|288903462|ref|YP_003434180.1| NADH dehydrogenase subunit 6 [Cervus nippon hortulorum] gi|288903490|ref|YP_003434206.1| NADH dehydrogenase subunit 6 [Cervus elaphus xanthopygus] gi|312233477|ref|YP_004021876.1| NADH dehydrogenase subunit 6 [Cervus elaphus songaricus] gi|62241305|dbj|BAD93681.1| NADH dehydrogenase subunit 6 [Cervus nippon yesoensis] gi|62751082|dbj|BAD95773.1| NADH dehydrogenase subunit6 [Cervus nippon centralis] gi|115531532|gb|ABJ09691.1| NADH dehydrogenase subunit 6 [Cervus nippon taiouanus] gi|117649980|gb|ABK54036.1| NADH dehydrogenase subunit 6 [Cervus nippon taiouanus] gi|285013428|gb|ADC32707.1| NADH dehydrogenase subunit 6 [Cervus nippon hortulorum] gi|285013442|gb|ADC32720.1| NADH dehydrogenase subunit 6 [Cervus elaphus xanthopygus] gi|309399278|gb|ADO78912.1| NADH dehydrogenase subunit 6 [Cervus nippon hortulorum] gi|309399292|gb|ADO78925.1| NADH dehydrogenase subunit 6 [Cervus elaphus songaricus] Length = 175 Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L ++V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVMMV 104 >gi|5081451|gb|AAD39388.1|AF123908_1 NADH dehydrogenase subunit 6 [Grus americana] gi|224504092|gb|ACN53669.1| NADH dehydrogenase subunit 6 [Grus americana] Length = 173 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMLFMGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|30314637|dbj|BAC76076.1| NADH dehydrogenase 6 [Cervus nippon yesoensis] Length = 175 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 12/167 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117 +G ++V F + M + LG+F G+L ++V +VF Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVMMVYYVLKDEEVEIVFQF 119 Query: 118 EGELSRLVFKGNNV-----ENIGK-VLYTQYAYPLEISGFILLLSMI 158 G +++ + E +G LY+ A+ + ++G+ LL+ ++ Sbjct: 120 NGLGDWVIYDTGDSGFFSEEAMGIAALYSYGAWLVIVTGWSLLIGVV 166 >gi|76009022|gb|ABA38973.1| NADH dehydrogenase subunit 6 [Leucopternis plumbeus] Length = 172 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + A + Sbjct: 62 GMLVVFVYSACLAADPFPEAWGDWR 86 >gi|83309028|ref|YP_423973.1| NADH dehydrogenase subunit 6 [Dasyurus hallucatus] gi|55416201|gb|AAV50068.1| NADH dehydrogenase subunit 6 [Dasyurus hallucatus] Length = 166 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 45/108 (41%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + ++ S M I + +P+Y SL+ + + + L + F+ +I ++Y Sbjct: 1 MEMMLIFVLSLMLIFGFVAFASKPSPVYGGLSLVISGGLGCAIVVSLNSTFLGLIVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + M + + F F ++ ++ + Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNMVAFSMLLFSLLMEMVWLMVSG 108 >gi|21306172|gb|AAM45892.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306174|gb|AAM45893.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306176|gb|AAM45894.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306178|gb|AAM45895.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306180|gb|AAM45896.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306182|gb|AAM45897.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306184|gb|AAM45898.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306186|gb|AAM45899.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306188|gb|AAM45900.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306190|gb|AAM45901.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306192|gb|AAM45902.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306194|gb|AAM45903.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306196|gb|AAM45904.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306198|gb|AAM45905.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306200|gb|AAM45906.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306202|gb|AAM45907.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306204|gb|AAM45908.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306206|gb|AAM45909.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306208|gb|AAM45910.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306210|gb|AAM45911.1| NADH dehydrogenase subunit 6 [Chalcites basalis] gi|21306212|gb|AAM45912.1| NADH dehydrogenase subunit 6 [Chalcites basalis] Length = 156 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 1 TYFILFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 60 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 61 GMLVVFVYSVSLAADPFPEAWGDWR 85 >gi|34106302|gb|AAQ62152.1| NADH dehydrogenase subunit 6 [Vidua chalybeata] gi|34106344|gb|AAQ62173.1| NADH dehydrogenase subunit 6 [Vidua chalybeata] Length = 159 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + V + +P Y V L+ A + G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|281308366|gb|ADA58331.1| NADH dehydrogenase subunit 6 [Leucopternis plumbeus] Length = 156 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVIGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + A + Sbjct: 62 GMLVVFVYSACLAADPFPEAWGDWR 86 >gi|164422160|ref|YP_001648831.1| NADH dehydrogenase subunit 6 [Sylvia atricapilla] gi|164414706|emb|CAP10133.1| NADH dehydrogenase subunit 6 [Sylvia atricapilla] Length = 172 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + + V + +P Y V L+ A V G + LG FV++ ++VY+G ++V Sbjct: 7 ILGLIFALGGLAVASNPSPYYGVIGLVIASVVGCGWLVSLGVSFVSLALIMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F++ + + G G + G++ +++ Sbjct: 67 FVYSVSLAADPYPEG-----WGDWGVVWYGLVMGLVVMVGGTI 104 >gi|66276112|ref|YP_238240.1| NADH dehydrogenase subunit 6 [Teratoscincus keyserlingii] gi|52426672|gb|AAU47381.1| NADH dehydrogenase subunit 6 [Teratoscincus keyserlingii] Length = 173 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 6/137 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L + I+ V + +P Y L+ A + A + ++LG F+A++ ++Y Sbjct: 1 MVYILF-LSTMCLILGIAGVASNPSPFYGAVGLVVAAASGASILVMLGGSFLAVVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP-----RKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + + + G + F+ + + + A Sbjct: 60 LGGMLVVFAYSVALSAEPYPETWGDPFVLYRVWGCVVLVFVFFWGFGGLTGLEGWGLEVA 119 Query: 118 EGELSRLVFKGNNVENI 134 G+ + V + Sbjct: 120 GGKWESPPMDFSGVVRL 136 >gi|13786597|ref|NP_112662.1| NADH dehydrogenase subunit 6 [Isoodon macrourus] gi|13676812|gb|AAK38292.1|AF358864_10 NADH dehydrogenase subunit 6 [Isoodon macrourus] Length = 166 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +P+Y SL+ + + + LG F+ ++ +VY Sbjct: 1 MKMMIIFLFSVLLIFGFVAFASKPSPVYGGLSLVASGGVGCAIVVSLGDTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V +F E E S F+ L E++ S Sbjct: 61 LGGMLV--VFGYTAAMATEEYPETWVGNMVAFSMFVITLLIEIVWYISG 107 >gi|110189726|ref|YP_665640.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|26983987|gb|AAN77605.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228014958|gb|ACP50369.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] Length = 172 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLTGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ SFF+ L EL+V Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFSFFVLGLFMELVV 102 >gi|289183327|ref|YP_003457302.1| NADH dehydrogenase subunit 6 [Coelophrys brevicaudata] gi|288908811|dbj|BAI77064.1| NADH dehydrogenase subunit 6 [Coelophrys brevicaudata] Length = 173 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F LF F ++ +V + +P ++ F L+ GL GA F++++ +VY Sbjct: 1 MSYLMFMLF-FGMVLGLVVVASNPSPYFAAFGLVVVAGVGCGLLTGAGAAFLSLVLFLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + + F ++ ++ + + S Sbjct: 60 LGGMLVVFAYSAALAAEPYPEGVGSRPVAFSAFVYLCVVGLISSMYWGGWYGSSW 114 >gi|288898457|gb|ADC66763.1| NADH dehydrogenase subunit 6 [Ursus arctos] Length = 175 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVVFVMGFVGFSSKPSPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105 >gi|126215431|ref|YP_001054904.1| NADH dehydrogenase subunit 6 [Pseudolabrus sieboldi] gi|126143632|dbj|BAF47365.1| NADH dehydrogenase subunit 6 [Pseudolabrus sieboldi] Length = 173 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 8/122 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F LF ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 5 LSFLLFGL--VMGLIAVASNPSPYFAALGLVVVAGMGCGVLVSYGGPFLSLVLFLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F + + AEP + F GS + + V + ++S E+S + Sbjct: 63 MLVVFAYSAAL------AAEPYPESWFSGSVAMYMGVYIFGVVLAGVPLWSGWYEVSWVP 116 Query: 126 FK 127 Sbjct: 117 AD 118 >gi|84488719|ref|YP_448778.1| NADH dehydrogenase subunit 6 [Cygnus columbianus] gi|67005520|gb|AAY62378.1| NADH dehydrogenase subunit 6 [Cygnus columbianus] Length = 173 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + + V + +P Y V L+ A V G L LG FVA++ +VY+G Sbjct: 2 AYFMFFLGICFAVGVLGVASNPSPYYGVVGLVLASVAGCGWLLGLGVSFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 ++V F++ + + A + +G + + + FM Sbjct: 62 GMLVVFVYSVALAAEPFPEAWGDWR--VIGYAAAFVAVVFVGLVFGGFM 108 >gi|326535925|ref|YP_004300369.1| NADH dehydrogenase subunit 6 [Gallinula chloropus] gi|325305661|gb|ADZ10824.1| NADH dehydrogenase subunit 6 [Gallinula chloropus] Length = 173 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 40/104 (38%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V +P Y V L+ A V G L LG FV+++ +VY+G + Sbjct: 4 FMIFLGVCFVLGGLAVAPNPSPYYGVVGLVLASVVGCGWLLSLGLSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +V FL+ + + + I +L L V Sbjct: 64 LVVFLYSVSLAADLYPEGWGDWRVMGYILGLILVLVVGLSVGGL 107 >gi|238063437|ref|ZP_04608146.1| monovalent cation/H+ antiporter subunit A [Micromonospora sp. ATCC 39149] gi|237885248|gb|EEP74076.1| monovalent cation/H+ antiporter subunit A [Micromonospora sp. ATCC 39149] Length = 986 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 3/119 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + ++++ L V R + ++ + +A +F+L GA VA+ +V + V Sbjct: 629 VVGLVTVVAALLAVGARRRLTAMLLVGVTGYGSAMMFVLHGAPDVALTQFLVETATIAV- 687 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F++++ + + +R +G ++ V + L F G Sbjct: 688 --FVLVLRRLPERFSTRPLRRSRWVRRSVGAAVGVVLAGLCLVAVGARTASPISLAFPG 744 >gi|219524214|ref|YP_002456357.1| NADH dehydrogenase subunit 6 [Hydropotes inermis] gi|161824391|gb|ABX79766.1| NADH dehydrogenase subunit 6 [Hydropotes inermis] Length = 175 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L ++V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFITGLLMEVVMV 104 >gi|238550689|gb|ACR44533.1| NADH dehydrogenase subunit 6 [Bonasa bonasia] Length = 173 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 46/106 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG F++++ ++Y+G Sbjct: 2 TYFVIFLGVSFMLGVLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFISLVLFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ ++ A ++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVFVVCAGAVMGGL 107 >gi|134096632|ref|YP_001102293.1| large membrane protein [Saccharopolyspora erythraea NRRL 2338] gi|133909255|emb|CAL99367.1| conserved large membrane protein [Saccharopolyspora erythraea NRRL 2338] Length = 1030 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 13/132 (9%) Query: 3 MQSLFFYLFSFMAIISSF--LVVTVRNPIYSVFSLIFAFVN------AAGLF--LLLGAE 52 M F +F+ +A++S L++ +R+ + ++ L+ ++ A LF LLG E Sbjct: 853 MSDADFSVFALVALLSVLVILMLLLRSVVAPIYLLVSVILSYAAAMGIAVLFWQFLLGGE 912 Query: 53 FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCA 109 + + +V V V + ++++ E ++ + G + + I +A +I A Sbjct: 913 LDWSVQPIAFVILVAVGADYNMLLMSRIREESDDGSRAGIARAVATTGGVITSAGIIFAA 972 Query: 110 SNFMVFSAEGEL 121 S F + S ++ Sbjct: 973 SMFALMSGTVDI 984 >gi|1171841|sp|P43198|NU6M_CEPGR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394668|emb|CAA52122.1| NADH dehydrogenase subunit 6 [Cepphus grylle] gi|21104318|emb|CAC80341.1| NADH dehydrogenase subunit 6 [Cepphus grylle] Length = 173 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVVFLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVA 84 ++V F++ + + A Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81 >gi|295641101|gb|ADG22649.1| NADH dehydrogenase subunit 6 [Mustela nivalis] Length = 177 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLCFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105 >gi|327202092|gb|AEA36684.1| NADH dehydrogenase subunit 6 [Chrysomyxa rhododendri] Length = 157 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 28 PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87 P+ SV LI F+ A +L +++++ +VVYVGA+IV LF+I+M+++ Sbjct: 1 PVTSVVYLITVFLLVAAYLVLQNMVYLSLVLIVVYVGAIIVLILFVIIMINLQDIRTTLN 60 Query: 88 KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 G ++ + + + + E LS + N+ Sbjct: 61 IPWSLQG--IASLMFIVIFINIDVSHINAEEYFLSMFQYITLNI 102 >gi|300776594|ref|ZP_07086452.1| sulfatase [Chryseobacterium gleum ATCC 35910] gi|300502104|gb|EFK33244.1| sulfatase [Chryseobacterium gleum ATCC 35910] Length = 652 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 33/164 (20%) Query: 5 SLFFYLFSFMAIISSFLVVTVRN------PIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT 58 S FYL S + + FL V+ + PI +F L F F GLF LL F +I Sbjct: 17 SFLFYLVSSLLLRFGFLAVSFQKADLSLLPIMKIFLLGFLFDFGVGLFFLLPYSFYLLIF 76 Query: 59 LVVYVGA----VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 Y+ + +I + FII +L L SFF + + NF+ Sbjct: 77 PQKYIRSLFNKIITYSTFIIFLLIH-------------LFSFFAEVTFWQEFESRFNFIA 123 Query: 115 FSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMI 158 ++ NN+ Y P+ IS +LL+++I Sbjct: 124 VDYLVYTYEVI---NNINE-------SYPLPVLISSILLLMTLI 157 >gi|161561751|ref|YP_001586147.1| NADH dehydrogenase subunit 6 [Rhynochetos jubatus] gi|143024744|gb|ABO93095.1| NADH dehydrogenase subunit 6 [Rhynochetos jubatus] Length = 172 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 36/75 (48%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ + V + +P Y V L+ A + G L LG FV+++ +VY+G ++V Sbjct: 7 FLGGWFVLGALAVASNPSPYYGVVGLVVASIAGCGWLLSLGVSFVSLVLFMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVA 84 F++ + + A Sbjct: 67 FVYSVSLAAEPFPEA 81 >gi|294507715|ref|YP_003571773.1| Na(+)/H(+) antiporter subunit A [Salinibacter ruber M8] gi|294344043|emb|CBH24821.1| Na(+)/H(+) antiporter subunit A [Salinibacter ruber M8] Length = 794 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 51/112 (45%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + ++++ +F + R+ I + SL + + A LFL GA +A ++ VI+ Sbjct: 604 WVLAILSVVGAFGTLFFRSRIGLITSLGVSGFSIALLFLAFGAPDLAKTQFLIETLTVIL 663 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 L + + D+ + +K + +G++ + LI+ + G+ Sbjct: 664 VVLILTAVSDVKETLTMGQKVTNGAVAAGMGVVVSGLILAVLKLPFENPMGD 715 >gi|255644203|gb|ACU22576.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus] gi|255644207|gb|ACU22579.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus] gi|255644211|gb|ACU22582.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus] gi|255644215|gb|ACU22585.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus] gi|255644219|gb|ACU22588.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus] gi|255644223|gb|ACU22591.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus] gi|255644227|gb|ACU22594.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus] gi|255644231|gb|ACU22597.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus] gi|255644235|gb|ACU22600.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus] gi|255644239|gb|ACU22603.1| NADH dehydrogenase subunit 6 [Kryptolebias ocellatus] Length = 173 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 + ++ + ++ ++ ++ ++N Sbjct: 75 GSNYVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|83816417|ref|YP_445814.1| putative monovalent cation/H+ antiporter subunit A [Salinibacter ruber DSM 13855] gi|83757811|gb|ABC45924.1| NADH dehydrogenase, putative [Salinibacter ruber DSM 13855] Length = 794 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 51/112 (45%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + ++++ +F + R+ I + SL + + A LFL GA +A ++ VI+ Sbjct: 604 WVLAILSVVGAFGTLFFRSRIGLITSLGVSGFSIALLFLAFGAPDLAKTQFLIETLTVIL 663 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 L + + D+ + +K + +G++ + LI+ + G+ Sbjct: 664 VVLILTAVSDVKETLTMGQKVTNGAVAAGMGVVVSGLILAVLKLPFENPMGD 715 >gi|295065635|ref|YP_003587432.1| NADH dehydrogenase subunit 6 [Apalone ferox] gi|226838420|gb|ACO83397.1| NADH dehydrogenase subunit 6 [Apalone ferox] Length = 175 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 50/112 (44%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F +LF I V + +P Y V LIF V + + +G F++++ ++Y Sbjct: 1 MMVFFMFLFEVCFIFWVISVASGPSPYYGVVGLIFGAVFGCLMLVGMGGSFISLVLFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +G ++V F + + + +A F +I ++ ++VC + + Sbjct: 61 LGGMLVVFAYSVALTGDPYPMAWRSYGDLFYVVGYILLVVVAIMVCFGVWSL 112 >gi|255643935|gb|ACU22375.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643943|gb|ACU22381.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255643987|gb|ACU22414.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644019|gb|ACU22438.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644031|gb|ACU22447.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644035|gb|ACU22450.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644039|gb|ACU22453.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644043|gb|ACU22456.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644051|gb|ACU22462.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 41/95 (43%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ ++N Sbjct: 75 GSDCVEGWGTRRISLAAAGYLLLVWGGGVILSTNL 109 >gi|121592328|gb|ABM63263.1| NADH dehydrogenase subunit 6 [Ailuropoda melanoleuca] Length = 175 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVSILSIVFVVSFAGFSSKPSPIYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L VC Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WLSNKAVLGAFIVGLLSELLSVC 105 >gi|134034933|ref|YP_001096532.1| NADH dehydrogenase subunit 6 [Melopsittacus undulatus] gi|133712157|gb|ABO36795.1| NADH dehydrogenase subunit 6 [Melopsittacus undulatus] Length = 169 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++++ LV + +P Y V L+F V G + LG FV+++ +VY+G + Sbjct: 4 FMLFLGVSFVLAALLVASNPSPYYGVVGLVFGSVVGCGWLVSLGVSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 +V F++ + + + G +G + ++V F+ + Sbjct: 64 LVVFVYSVSLAADPFPQV-------WGGWRVVGYVLGLMLVVGVGFVGW 105 >gi|295641114|gb|ADG22661.1| NADH dehydrogenase subunit 6 [Mustela kathiah] Length = 177 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WASNKAVLGAFIVGLLSELLTAC 105 >gi|296099694|gb|ADG95294.1| NADH dehydrogenase subunit 6 [Polypterus palmas polli] Length = 167 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 2/110 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS + +IS V + +P ++ F L+ G+ + G F++MI ++Y+G Sbjct: 2 VLMVVFSVIFLISLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFM 113 ++V F + + A + LG F+ ++ + V F+ Sbjct: 62 MLVVFAYSAALAAEPYPAAWGSWEVFSYVLGYMFLIVIVWGVFVGDFGFL 111 >gi|296099554|gb|ADG95164.1| NADH dehydrogenase subunit 6 [Polypterus ansorgii] Length = 167 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 48/112 (42%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS + +IS V + +P ++ F L+ G+ + G F++MI ++Y+G Sbjct: 2 VLMVVFSMIFLISLIAVASNPSPYFAAFGLMVGAGAGCGMLVQCGMTFLSMILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + A + ++ + V +F VF + Sbjct: 62 MLVVFAYSAALAAEPYPRAWGSWEVFSYVLGYVFFIVGVWAVFVGDFEVFDS 113 >gi|157367480|gb|ABV45612.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367494|gb|ABV45625.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] Length = 175 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 42/103 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +P+Y SLI + G+ + G F+ ++ +VY+G ++V Sbjct: 6 FIMSVLYVVGFIGFSSKPSPVYGGMSLIVSGGLGCGIIMSSGGSFLGLVVFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + I M + ++ +IV + Sbjct: 66 VFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFS 108 >gi|159524402|ref|YP_001542753.1| NADH dehydrogenase subunit 6 [Melursus ursinus] gi|121592314|gb|ABM63250.1| NADH dehydrogenase subunit 6 [Melursus ursinus] gi|195182417|emb|CAQ68467.1| NADH dehydrogenase subunit 6 [Melursus ursinus] Length = 175 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSIVFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105 >gi|19343515|ref|NP_597979.1| NADH dehydrogenase subunit 6 [Ursus arctos] gi|19110571|gb|AAL85180.1|AF303110_13 NADH dehydrogenase subunit 6 [Ursus arctos] Length = 175 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105 >gi|32402537|ref|NP_861487.1| NADH dehydrogenase subunit 6 [Procavia capensis] gi|32187992|dbj|BAC78410.1| NADH dehydrogenase subunit 6 [Procavia capensis] Length = 180 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 1/107 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PI+ I + +G+ + G F+ ++ ++Y Sbjct: 1 MMMYVTFILSVVFVLGFVGFSSKPSPIFGGLVFIISGGVGSGVIVSSGGSFLGVVMFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + M + + F GS F+G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEEYPESWVSNWVVF-GSLFLGVLFEVLVVIW 106 >gi|157367466|gb|ABV45599.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] Length = 175 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 42/103 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +P+Y SLI + G+ + G F+ ++ +VY+G ++V Sbjct: 6 FIMSVLYVVGFIGFSSKPSPVYGGMSLIVSGGLGCGIIMSSGGSFLGLVVFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + I M + ++ +IV + Sbjct: 66 VFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFS 108 >gi|166851916|ref|YP_001661379.1| NADH dehydrogenase subunit 6 [Dendrohyrax dorsalis] gi|166788074|emb|CAP17666.1| NADH dehydrogenase subunit 6 [Dendrohyrax dorsalis] Length = 179 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +PI+ I + +GL + G F+ ++ +VY+G ++V Sbjct: 6 FILSVVFVLGFVGFSSKPSPIFGGLVFIVSGGVGSGLIVSSGGSFLGVVMFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 F + M + + +GS F+G L L+V + Sbjct: 66 VFGYTTAMATEEYPES-WVSNWVVMGSLFLGALFEGLVVIWA 106 >gi|209427670|ref|YP_002274300.1| NADH dehydrogenase subunit 6 [Lutra lutra] gi|209361432|gb|ACI43346.1| NADH dehydrogenase subunit 6 [Lutra lutra] Length = 177 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105 >gi|5836070|ref|NP_008054.1|ND6_15105 NADH dehydrogenase subunit 6 [Ornithorhynchus anatinus] gi|2499295|sp|Q36460|NU6M_ORNAN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1469261|emb|CAA58453.1| NADH dehydrogenase subunit 6 [Ornithorhynchus anatinus] Length = 166 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F YL S + ++ + +PIY SL+ + G+ + LG F+ +I +VY+G + Sbjct: 4 FVYLLSILLVLGFMAFASKPSPIYGGLSLVLSGGVGCGIVVSLGGSFLGLIVFLVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +V F + M + +G+L + Sbjct: 64 LVVFGYTAAMATEEYPETWVDSTVFTNLLIMVGMLGVIWYYFSG 107 >gi|255643995|gb|ACU22420.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] gi|255644047|gb|ACU22459.1| NADH dehydrogenase subunit 6 [Kryptolebias marmoratus] Length = 173 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 40/95 (42%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 V + +P ++ SL+ + L G F+A+I ++Y+G ++V F + + Sbjct: 15 GVVGVASNPSPGFAALSLVMVAGSGCSLLAGQGGYFLALILFLIYLGGMLVVFAYSVAFT 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 D ++ + ++ ++ ++ +N Sbjct: 75 GSDYVEGWGTRRISLAAAGYLLLVWGGGVILNTNL 109 >gi|5835469|ref|NP_008392.1|ND6_13342 NADH dehydrogenase subunit 6 [Florometra serratissima] gi|2970433|gb|AAD05083.1| NADH dehydrogenase subunit 6 [Florometra serratissima] Length = 164 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 63/151 (41%), Gaps = 6/151 (3%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+ + S LV +P +S L+ +++ + LG F+A I L++Y+G +++ Sbjct: 4 YILVISLLFGSSLVFYSISPYFSALGLVTVSISSCLILSHLGISFLAFILLLIYMGGMLI 63 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F++ + + + + L F I L N + + S + Sbjct: 64 VFIYSNALTNDRFPIISNINEIFTLSFFLIFWTIFLLNNQNWNNINNNTNLSSSINIEGA 123 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIG 159 + + +I + ++G+ILL+++I Sbjct: 124 SYLFHISMAPF------FLLAGYILLITLIA 148 >gi|15595856|ref|NP_249350.1| hypothetical protein PA0659 [Pseudomonas aeruginosa PAO1] gi|9946536|gb|AAG04048.1|AE004500_14 hypothetical protein PA0659 [Pseudomonas aeruginosa PAO1] Length = 358 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L ++ +++G F+ T+ V V A+ FI++ + I ++ G+L Sbjct: 186 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 244 Query: 94 GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 F+G + L++ + G V+ + + Sbjct: 245 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 290 Query: 150 GFILL--LSMIGAIVL 163 ILL + +I AI L Sbjct: 291 -IILLPIVGIIAAIAL 305 >gi|224588030|ref|YP_002640560.1| NADH dehydrogenase subunit 6 [Martes flavigula] gi|223951391|gb|ACN29646.1| NADH dehydrogenase subunit 6 [Martes flavigula] gi|295641199|gb|ADG22740.1| NADH dehydrogenase subunit 6 [Martes flavigula] Length = 177 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WASNKAVLGAFIVGLLSELLTAC 105 >gi|126792865|gb|ABO27284.1| NADH dehydrogenase subunit 6 [Brotogeris chiriri] Length = 167 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 44/115 (38%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++++ LV + +P Y L+F V G + LGA FVA+ +VY+G Sbjct: 2 TYFVLALGVGFVLAALLVASNPSPYYGAVGLVFGSVVGCGWLVSLGASFVALALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 ++V F++ + + + + + + V G Sbjct: 62 GMLVVFVYSVSLAADPFPQVWGGWRVVVYAFVVLLAVGVGAVGWGLGVRVVDNVG 116 >gi|153124134|ref|YP_001382357.1| NADH dehydrogenase subunit 6 [Enhydra lutris] gi|152962773|dbj|BAF74007.1| NADH dehydrogenase subunit 6 [Enhydra lutris] Length = 177 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WASNKAVLGAFIVGLLSELLTAC 105 >gi|109156431|ref|YP_654273.1| NADH dehydrogenase subunit 6 [Galemys pyrenaicus] gi|56714041|gb|AAW23989.1| NADH dehydrogenase subunit 6 [Galemys pyrenaicus] Length = 175 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 70/159 (44%), Gaps = 12/159 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIAFILSTILVVSFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNYGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117 +G ++V F + + ++ + LG F +G+LA L + + ++ + Sbjct: 61 LGGMLVVFGYT-TAMAMEEYPEVWVSNKTVLGLFMLGLLAELLFMVYCIYDEKLEIILNF 119 Query: 118 EGELSRLVFKGNNV-----ENIGKV-LYTQYAYPLEISG 150 G+ +++ + E +G LY+ + + +SG Sbjct: 120 NGQGDWVIYDTGDSGFFSEEAMGIAGLYSYGTWLVIVSG 158 >gi|71657965|ref|YP_272110.1| NADH dehydrogenase subunit 6 [Gallus lafayetii] gi|71040262|dbj|BAE16116.1| NADH dehydrogenase subunit 6 [Gallus lafayettei] Length = 173 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 45/103 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G F+ ++ +++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGNWRVVGYGLGFVLVVWMGVVL 104 >gi|264681210|ref|YP_003289091.1| NADH dehydrogenase subunit 6 [Pycnonotus taivanus] gi|288903505|ref|YP_003434261.1| NADH dehydrogenase subunit 6 [Pycnonotus sinensis] gi|209887444|gb|ACI95063.1| NADH dehydrogenase subunit 6 [Pycnonotus taivanus] gi|288548558|gb|ADC52427.1| NADH dehydrogenase subunit 6 [Pycnonotus sinensis] Length = 172 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + V + +P Y V L+ A + G + LG FV+++ ++VY+G + Sbjct: 4 FVLFLGLCFALGGLAVASNPSPYYGVVGLVVASIAGCGWLVSLGVSFVSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +V F++ + + E G +G +G++ V F V G ++ + Sbjct: 64 LVVFVYSVSLAA--DPYPEAWADWGVIGYGVGMGLVVMVGFVMGGAFEVLVDGGTVNSVG 121 Query: 126 FKG 128 Sbjct: 122 LSS 124 >gi|157367452|gb|ABV45586.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367618|gb|ABV45719.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367674|gb|ABV45771.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] gi|157367688|gb|ABV45784.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] Length = 175 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 42/103 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +P+Y SLI + G+ + G F+ ++ +VY+G ++V Sbjct: 6 FVMSVLYVVGFIGFSSKPSPVYGGMSLIVSGGLGCGIIMSSGGSFLGLVVFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + I M + ++ +IV + Sbjct: 66 VFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFS 108 >gi|295641073|gb|ADG22623.1| NADH dehydrogenase subunit 6 [Mustela sibirica] gi|295641087|gb|ADG22636.1| NADH dehydrogenase subunit 6 [Mustela putorius] Length = 177 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLCFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105 >gi|270155266|gb|ACZ62666.1| NADH dehydrogenase subunit 6 [Pseudaphritis urvillii] Length = 174 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 42/103 (40%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V +P ++ F L+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFMLGLVLGMVAVAANPSPYFAAFGLVMVAGMGCGVVMGYGGAFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + ++ F+G++ IVC + Sbjct: 67 FAYSAALVAEPYPEGLGSAPVLVYVVGFLGMIGGVGIVCWEGW 109 >gi|291005714|ref|ZP_06563687.1| large membrane protein [Saccharopolyspora erythraea NRRL 2338] Length = 998 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 13/132 (9%) Query: 3 MQSLFFYLFSFMAIISSF--LVVTVRNPIYSVFSLIFAFVN------AAGLF--LLLGAE 52 M F +F+ +A++S L++ +R+ + ++ L+ ++ A LF LLG E Sbjct: 821 MSDADFSVFALVALLSVLVILMLLLRSVVAPIYLLVSVILSYAAAMGIAVLFWQFLLGGE 880 Query: 53 FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF---LGSFFIGILAAELIVCA 109 + + +V V V + ++++ E ++ + G + + I +A +I A Sbjct: 881 LDWSVQPIAFVILVAVGADYNMLLMSRIREESDDGSRAGIARAVATTGGVITSAGIIFAA 940 Query: 110 SNFMVFSAEGEL 121 S F + S ++ Sbjct: 941 SMFALMSGTVDI 952 >gi|227505925|ref|ZP_03935974.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A [Corynebacterium striatum ATCC 6940] gi|227197447|gb|EEI77495.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A [Corynebacterium striatum ATCC 6940] Length = 1001 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 1/98 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + + I+ + N + V + + LF L GA +A+ L+V ++V Sbjct: 612 VAALIIIVCAVAATVTDNRLSGVIIVGVTGYALSFLFALHGAPDLALTQLLVET-IIMVL 670 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 F+ ++ + + E + K +G+ +V Sbjct: 671 FMLVLRRMPANTEWKQDPKMGRLRAWLAVGVGLTVTLV 708 >gi|115494899|ref|YP_778680.1| NADH dehydrogenase subunit 6 [Rusa unicolor swinhoei] gi|114329515|gb|ABI64279.1| NADH dehydrogenase subunit 6 [Rusa unicolor swinhoei] gi|117650158|gb|ABK54086.1| NADH dehydrogenase subunit 6 [Rusa unicolor swinhoei] Length = 175 Score = 38.5 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S M ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIMFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L ++V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVMMV 104 >gi|262399745|gb|ACY65698.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|262399773|gb|ACY65724.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|262399787|gb|ACY65737.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|295641212|gb|ADG22752.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|319656091|gb|ADV58510.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|319656105|gb|ADV58523.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|319656147|gb|ADV58562.1| NADH dehydrogenase subunit 6 [Martes pennanti] Length = 177 Score = 38.5 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105 >gi|159793509|ref|YP_001542779.1| NADH dehydrogenase subunit 6 [Ursus thibetanus] gi|121592300|gb|ABM63237.1| NADH dehydrogenase subunit 6 [Ursus thibetanus] Length = 175 Score = 38.5 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++S + +PIY LI G+ L G F+ ++ +VY Sbjct: 1 MMMYIVFILSIVFVMSFVGFSSKPSPIYGGLVLIINGGVGCGIVLNFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLIAC 105 >gi|5834856|ref|NP_006927.1|ND6_10016 NADH dehydrogenase subunit 6 [Gallus gallus] gi|71658063|ref|YP_272058.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|71658091|ref|YP_272071.1| NADH dehydrogenase subunit 6 [Gallus gallus gallus] gi|128810|sp|P18941|NU6M_CHICK RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|12973|emb|CAA36637.1| unnamed protein product [Gallus gallus] gi|28557167|dbj|BAC57587.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|28629851|gb|AAO44996.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|28629864|gb|AAO45008.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|42557373|dbj|BAD11051.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|42557387|dbj|BAD11064.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|42558162|dbj|BAD11126.1| NADH dehydrogenase subunit VI [Gallus gallus] gi|71040178|dbj|BAE16038.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|71040192|dbj|BAE16051.1| NADH dehydrogenase subunit 6 [Gallus sonneratii] gi|71040206|dbj|BAE16064.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|71040220|dbj|BAE16077.1| NADH dehydrogenase subunit 6 [Gallus gallus gallus] gi|71040290|dbj|BAE16142.1| NADH dehydrogenase subunit 6 [Gallus sonneratii] gi|283048766|gb|ADB06580.1| NADH dehydrogenase subunit 6 [Gallus gallus jabouillei] gi|283048781|gb|ADB06594.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048809|gb|ADB06620.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048837|gb|ADB06646.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048851|gb|ADB06659.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048865|gb|ADB06672.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048879|gb|ADB06685.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048907|gb|ADB06711.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048921|gb|ADB06724.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048935|gb|ADB06737.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048949|gb|ADB06750.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049019|gb|ADB06815.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|283049033|gb|ADB06828.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|283049047|gb|ADB06841.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049061|gb|ADB06854.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|283049075|gb|ADB06867.1| NADH dehydrogenase subunit 6 [Gallus gallus jabouillei] gi|283049089|gb|ADB06880.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049103|gb|ADB06893.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049117|gb|ADB06906.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049131|gb|ADB06919.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049145|gb|ADB06932.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049187|gb|ADB06971.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|283049201|gb|ADB06984.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049215|gb|ADB06997.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|283049229|gb|ADB07010.1| NADH dehydrogenase subunit 6 [Gallus gallus murghi] gi|283049243|gb|ADB07023.1| NADH dehydrogenase subunit 6 [Gallus gallus murghi] gi|283049257|gb|ADB07036.1| NADH dehydrogenase subunit 6 [Gallus gallus murghi] gi|283049299|gb|ADB07075.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049313|gb|ADB07088.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049327|gb|ADB07101.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049355|gb|ADB07127.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|283049383|gb|ADB07153.1| NADH dehydrogenase subunit 6 [Gallus gallus] Length = 173 Score = 38.5 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ ++ +++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVWMGVVLGGL 107 >gi|218889382|ref|YP_002438246.1| hypothetical protein PLES_06381 [Pseudomonas aeruginosa LESB58] gi|254243736|ref|ZP_04937058.1| hypothetical protein PA2G_04562 [Pseudomonas aeruginosa 2192] gi|126197114|gb|EAZ61177.1| hypothetical protein PA2G_04562 [Pseudomonas aeruginosa 2192] gi|218769605|emb|CAW25365.1| putative membrane protein [Pseudomonas aeruginosa LESB58] Length = 358 Score = 38.5 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L ++ +++G F+ T+ V V A+ FI++ + I ++ G+L Sbjct: 186 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 244 Query: 94 GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 F+G + L++ + G V+ + + Sbjct: 245 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 290 Query: 150 GFILL--LSMIGAIVL 163 ILL + +I AI L Sbjct: 291 -IILLPIVGIIAAIAL 305 >gi|254237149|ref|ZP_04930472.1| hypothetical protein PACG_03200 [Pseudomonas aeruginosa C3719] gi|126169080|gb|EAZ54591.1| hypothetical protein PACG_03200 [Pseudomonas aeruginosa C3719] Length = 358 Score = 38.5 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L ++ +++G F+ T+ V V A+ FI++ + I ++ G+L Sbjct: 186 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 244 Query: 94 GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 F+G + L++ + G V+ + + Sbjct: 245 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 290 Query: 150 GFILL--LSMIGAIVL 163 ILL + +I AI L Sbjct: 291 -IILLPIVGIIAAIAL 305 >gi|226453499|ref|YP_002791066.1| NADH dehydrogenase subunit 6 [Rattus exulans] gi|160688858|gb|ABX45270.1| NADH dehydrogenase subunit 6 [Rattus exulans] gi|160688872|gb|ABX45283.1| NADH dehydrogenase subunit 6 [Rattus exulans] gi|160688886|gb|ABX45296.1| NADH dehydrogenase subunit 6 [Rattus exulans] Length = 172 Score = 38.5 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY F LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ FFI L EL++ Sbjct: 66 --VFGYTTAMATEEYPETWGSSWFIFGFFILGLFMELLM 102 >gi|5836056|ref|NP_008814.1|ND6_15104 NADH dehydrogenase subunit 6 [Mustelus manazo] gi|3582421|dbj|BAA33046.1| NADH dehydrogenase subunit 6 [Mustelus manazo] Length = 173 Score = 38.5 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ I+ V + +P Y+ L+ A GL + G F+++I ++Y+G + Sbjct: 4 FMFVMMIGLILGLMGVASNPSPYYAALGLVTAAGVGCGLLVGHGGSFMSLILFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +V F + + P + ++G+ L V FMV Sbjct: 64 LVVFAYTAAL----AAEPYPESWGDWSVLLYVGLYLVGLFVSGKYFMVKGW 110 >gi|295641143|gb|ADG22688.1| NADH dehydrogenase subunit 6 [Neovison vison] Length = 177 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105 >gi|270155285|gb|ACZ62680.1| NADH dehydrogenase subunit 6 [Notothenia microlepidota] Length = 174 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 3/151 (1%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL F ++ V +P+Y+ L+ G + LG F ++ ++Y+G ++V Sbjct: 6 YLLMFGVVVGMAAVAANPSPLYAALGLVLVAAMGCGFIMCLGGTFSCLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS--NFMVFSAEGELSRLVF 126 F + + + D+ ++G+ + S + + + GE S + Sbjct: 66 VFAYSVALCAEDLPTGLAEGLVFKAMVGYLGVTGGVALFQWSPEAPLFWWSVGEESEMSV 125 Query: 127 KGNNVENIGKVLYTQYAYPLEISGFILLLSM 157 +E + + Y + L I + LL+++ Sbjct: 126 MQGEIEGVSEA-YGSGGFLLIICAWALLVAL 155 >gi|289183202|ref|YP_003457186.1| NADH dehydrogenase subunit 6 [Balanoglossus clavigerus] gi|288995545|emb|CBH40147.1| NADH dehydrogenase subunit 6 [Balanoglossus clavigerus] Length = 159 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFF 70 SF+ + LV R+P +S ++ A V +G +L G+ F+ +I ++Y+G ++V F Sbjct: 5 LSFLVVGGGILVFISRSPYFSALGVVGAVVGFSGFLVLSGSVFIGLILFLMYLGGMLVVF 64 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 + + G+ + + I+ L+ Sbjct: 65 AYSAALASDRYPDV------GWSKAIPLVIIFGGLV 94 >gi|294494689|ref|YP_448957.2| NADH dehydrogenase subunit 6 [Cervus elaphus] gi|266265871|dbj|BAE66711.2| NADH dehydrogenase subunit 6 [Cervus elaphus] Length = 175 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVVGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L ++V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEIVMV 104 >gi|108773480|gb|ABG11772.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|108773536|gb|ABG11824.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|108773550|gb|ABG11837.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|108773564|gb|ABG11850.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|157092680|gb|ABV22519.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228014874|gb|ACP50291.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228014888|gb|ACP50304.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228014972|gb|ACP50382.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228014986|gb|ACP50395.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228015000|gb|ACP50408.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228015014|gb|ACP50421.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228015028|gb|ACP50434.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228015042|gb|ACP50447.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|291464877|gb|ADE05950.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|291464891|gb|ADE05963.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|296041288|gb|ADG85632.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|296041302|gb|ADG85645.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] Length = 172 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY F LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ SFF+ L EL+V Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFSFFVLGLFMELVV 102 >gi|115494787|ref|YP_778836.1| NADH dehydrogenase subunit 6 [Erignathus barbatus] gi|115344981|emb|CAJ57025.1| NADH dehydrogenase subunit 6 [Erignathus barbatus] Length = 175 Score = 38.5 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +P+Y LI G+ L G F+ ++ ++Y Sbjct: 1 MVTYIVFILSIIFVISFVGFSSKPSPVYGGLVLIIGGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105 >gi|5081453|gb|AAD39389.1|AF123909_1 NADH dehydrogenase subunit 6 [Grus nigricollis] gi|224504134|gb|ACN53708.1| NADH dehydrogenase subunit 6 [Grus nigricollis] Length = 173 Score = 38.5 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFMGLCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|312233449|ref|YP_004021850.1| NADH dehydrogenase subunit 6 [Cervus eldi] gi|308277999|gb|ADO27635.1| NADH dehydrogenase subunit 6 [Cervus eldi] Length = 175 Score = 38.5 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSILFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L ++V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVMMV 104 >gi|218436974|ref|YP_002381181.1|ND6_23367 NADH dehydrogenase subunit 6 [Rattus tanezumi] gi|160688900|gb|ABX45309.1| NADH dehydrogenase subunit 6 [Rattus tanezumi] Length = 172 Score = 38.5 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY F LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 +F E E F+ FF+ L EL++ ++ Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELVMFYLLYL 108 >gi|295442710|ref|YP_003595316.1| NADH dehydrogenase subunit 6 [Cuora galbinifrons] gi|190148575|gb|ACE63319.1| NADH dehydrogenase subunit 6 [Cuora galbinifrons] Length = 174 Score = 38.5 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + ++ V + F G +++ I+ ++ ++S EG + V Sbjct: 64 LVIFAYSSALMAEPFPVGWVSLEGVFYGLYYLFII---MVFVQMGCHLWSIEGIGADTVD 120 Query: 127 KGN 129 G Sbjct: 121 AGG 123 >gi|288903215|ref|YP_003433824.1| NADH dehydrogenase subunit 6 [Sagitta enflata] gi|288451130|dbj|BAI68190.1| NADH dehydrogenase subunit 6 [Sagitta enflata] Length = 152 Score = 38.5 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++S + ++SS +V +PI S L+ VN + + L + F+ M+ +VYVG ++V Sbjct: 18 VWSIILVLSSMFMVV-ESPISSGLLLVMMLVNMS-ILLSMKNGFMGMVLFIVYVGGIMVL 75 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFL 93 F + +MM + + F+ Sbjct: 76 FTYCLMMSPLQFFNKKKYYGTMFV 99 >gi|260150647|ref|YP_003208139.1| NADH dehydrogenase subunit 6 [Quasipaa spinosa] gi|212656683|gb|ACJ36248.1| NADH dehydrogenase subunit 6 [Quasipaa spinosa] Length = 165 Score = 38.5 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 4/119 (3%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLL--GAEFVAMITLVVYVGAVIVFF 70 +I V + +P Y L+ AG F+L G F+A++ +VY+G ++V F Sbjct: 4 LCLLIGLLGVASNPSPYYGALGLVV--GAGAGCFVLAKGGVTFLALVLFLVYLGGMMVVF 61 Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 + ++ + +IG++ + E + K + Sbjct: 62 AYCAALVAEPYPETWGSRVVVVYLMLYIGLVVVGWGAFGKYWGEVGGEWVRTWWAMKSS 120 >gi|115494731|ref|YP_778862.1| NADH dehydrogenase subunit 6 [Phoca fasciata] gi|115345009|emb|CAJ57051.1| NADH dehydrogenase subunit 6 [Phoca fasciata] Length = 175 Score = 38.5 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIIGGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVMGLLSELLLAC 105 >gi|262399675|gb|ACY65633.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|262399689|gb|ACY65646.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|262399703|gb|ACY65659.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|262399717|gb|ACY65672.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|262399731|gb|ACY65685.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|262399801|gb|ACY65750.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|319656119|gb|ADV58536.1| NADH dehydrogenase subunit 6 [Martes pennanti] gi|319656133|gb|ADV58549.1| NADH dehydrogenase subunit 6 [Martes pennanti] Length = 177 Score = 38.5 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105 >gi|28301766|ref|NP_783566.1| NADH dehydrogenase subunit 6 [Muntiacus muntjak] gi|28207788|gb|AAO32139.1| NADH dehydrogenase subunit 6 [Muntiacus muntjak] Length = 175 Score = 38.5 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEIWLSSK-AVLGAFITGLLMEAAMV 104 >gi|55583438|ref|YP_138277.1| NADH dehydrogenase subunit 6 [Hyla chinensis] gi|46981619|gb|AAT07871.1| NADH dehydrogenase subunit 6 [Hyla chinensis] Length = 165 Score = 38.5 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 43/103 (41%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LF + V + +P Y+ L+ + + + GA F++++ +VY+G ++V Sbjct: 3 FLFEVGLVAGFLAVASNPSPYYAALGLVVSAGVGCLILMYGGASFLSLVLFLVYLGGMMV 62 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + ++ A ++ +L+ ++ + Sbjct: 63 VFAYSAALVAEPYPEAWGSVGVVIYLVGYLVLLSLWWLIGGGS 105 >gi|110189674|ref|AP_004903.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|1352596|sp|P03926|NU6M_RAT RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|639985|emb|CAA32965.1| NADH subunit 6 [Rattus norvegicus] gi|19577325|emb|CAD21570.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|54145383|gb|AAV31050.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|108773493|gb|ABG11784.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|108773508|gb|ABG11798.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|108773511|gb|ABG11800.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|108773578|gb|ABG11863.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|108773592|gb|ABG11876.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|108773606|gb|ABG11889.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|108773620|gb|ABG11902.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|157092694|gb|ABV22526.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228014902|gb|ACP50317.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228014916|gb|ACP50330.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228014930|gb|ACP50343.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|228014944|gb|ACP50356.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|291464905|gb|ADE05976.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] gi|291464919|gb|ADE05989.1| NADH dehydrogenase subunit 6 [Rattus norvegicus] Length = 172 Score = 38.5 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY F LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ SFF+ L EL+V Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFSFFVLGLFMELVV 102 >gi|288903540|ref|YP_003434294.1| NADH dehydrogenase subunit 6 [Cervus elaphus yarkandensis] gi|285013456|gb|ADC32733.1| NADH dehydrogenase subunit 6 [Cervus elaphus yarkandensis] Length = 175 Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L ++V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVVMV 104 >gi|108793264|ref|YP_636917.1| NADH dehydrogenase subunit 6 [Lophiomus setigerus] gi|25005633|dbj|BAC23292.1| NADH dehydrogenase subunit 6 [Lophiomus setigerus] Length = 174 Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 40/102 (39%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF I+ +V + R+P ++ L+ ++ G+ + G F+ ++ ++Y+G ++V Sbjct: 7 LFLVSLIMGMVVVASNRSPYFAALGLVVVAGSSCGILVGCGGSFLPLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + + +G + L+ Sbjct: 67 FAYSTALAAEPYPDGYLGGSPLVSMIMCLGAVGVLLVYLFGG 108 >gi|189164468|gb|ACD77405.1| NADH dehydrogenase subunit 6 [Hypsiglena chlorophaea chlorophaea] Length = 172 Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+M + F + I + P V +L+ ++LG F A++ + Sbjct: 1 MIMMNYLFSVVMVFVIFGVLALGVTVVPYQGVVALMGVSFICCVFMVMLGRTFAALVMYI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VY+G +IV F + + + +++ V + FL F+G L L+ +++ Sbjct: 61 VYLGGLIVVFSYCVSVEKDEVDDYGVVGFKYFVIFLSVLFVGFLWWVLVGEVGGLLIYVN 120 Query: 118 EGELSRLVFKGNNV 131 +L L G++V Sbjct: 121 WEDLVCLEVNGSSV 134 >gi|115494591|ref|YP_778810.1| NADH dehydrogenase subunit 6 [Leptonychotes weddellii] gi|115344953|emb|CAJ56999.1| NADH dehydrogenase subunit 6 [Leptonychotes weddellii] Length = 175 Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105 >gi|102580664|gb|ABF70974.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048795|gb|ADB06607.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048823|gb|ADB06633.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048963|gb|ADB06763.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048977|gb|ADB06776.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283048991|gb|ADB06789.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|283049005|gb|ADB06802.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049159|gb|ADB06945.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|283049173|gb|ADB06958.1| NADH dehydrogenase subunit 6 [Gallus gallus spadiceus] gi|283049285|gb|ADB07062.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049369|gb|ADB07140.1| NADH dehydrogenase subunit 6 [Gallus gallus] gi|283049397|gb|ADB07166.1| NADH dehydrogenase subunit 6 [Gallus gallus] Length = 173 Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ ++ +++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVWMGVVLGGL 107 >gi|317134202|ref|YP_004123413.1| NADH dehydrogenase subunit 6 [Rattus sordidus] gi|290573452|gb|ADD46568.1| NADH dehydrogenase subunit 6 [Rattus sordidus] Length = 172 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLVGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ FF+ L EL++ Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELVM 102 >gi|168481216|gb|ACA24722.1| NADH dehydrogenase subunit 6 [Ursus arctos] Length = 175 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVVFVMGFVGFSSKPSPIYGGLVLIISGGVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ LI C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIVGLLSELLIAC 105 >gi|94490681|ref|YP_588197.1| NADH dehydrogenase subunit 6 [Phaethon rubricauda] gi|90990895|dbj|BAE92887.1| NADH dehydrogenase subunit 6 [Phaethon rubricauda] Length = 173 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVVVLGLCFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVA 84 ++V F++ + + A Sbjct: 62 GMLVVFVYSVALAADPFPEA 81 >gi|37620576|gb|AAQ95097.1| NADH dehydrogenase subunit 6 [Leptonychotes weddellii] Length = 175 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105 >gi|317097153|ref|YP_004123281.1| NADH dehydrogenase subunit 6 [Rattus tunneyi] gi|290573410|gb|ADD46529.1| NADH dehydrogenase subunit 6 [Rattus tunneyi] Length = 172 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLAGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ FF+ L EL++ Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELML 102 >gi|115494647|ref|YP_778823.1| NADH dehydrogenase subunit 6 [Hydrurga leptonyx] gi|37620574|gb|AAQ95096.1| NADH dehydrogenase subunit 6 [Hydrurga leptonyx] gi|115344967|emb|CAJ57012.1| NADH dehydrogenase subunit 6 [Hydrurga leptonyx] Length = 175 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVISFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105 >gi|25057497|ref|NP_739670.1| NADH dehydrogenase subunit 6 [Cataetyx rubrirostris] gi|25005549|dbj|BAC23214.1| NADH dehydrogenase subunit 6 [Cataetyx rubrirostris] Length = 173 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 45/111 (40%), Gaps = 1/111 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TYIMSLFLLGMVLGLVGVASNPSPYFAALGLVVVAGMGCGVLIGFGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMV 114 ++V F + + + R ++G + +G+L + V Sbjct: 62 GMLVVFAYSAALAAEPYPESWGSRSVMSYVGVYLLGVLLVSGPFWGGWYEV 112 >gi|288908825|dbj|BAI77077.1| NADH dehydrogenase subunit 6 [Zalieutes elater] Length = 173 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 1/106 (0%) Query: 8 FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F F ++ +VV +P ++ F L+ G+ + GA F++++ ++Y+G + Sbjct: 4 FMFLLFFGLVGGLVVVASNPSPYFAAFGLVIVAGVGCGVLMGAGAGFLSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +V F + + + F ++ ++ + + Sbjct: 64 LVVFAYSAALAAEPYPEGVGSRPVAFSALTYLCVIGLVASMFWGGW 109 >gi|148922598|ref|YP_001293630.1| NADH dehydrogenase subunit 6 [Mammut americanum] gi|148540940|gb|ABQ86190.1| NADH dehydrogenase subunit 6 [Mammut americanum] Length = 175 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + +I + +P+Y SL+ + G+ + G F+ ++ +VY+G ++V Sbjct: 6 FIMSVLYVIGFIGFSSKPSPVYGGMSLVVSGGLGCGIVMSSGGSFLGLVVFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 F + I M + L +F +G+L ++V Sbjct: 66 VFGYTIAMATEEYPETWGSNV-VVLSAFLVGLLMEIVMVMWM 106 >gi|5835030|ref|NP_007093.1|ND6_10464 NADH dehydrogenase subunit 6 [Cyprinus carpio] gi|128813|sp|P24982|NU6M_CYPCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|12840|emb|CAA43338.1| NADH ubiquinone oxidoreductase subunit 6 [Cyprinus carpio] Length = 172 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 46/110 (41%), Gaps = 1/110 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + + + E R G++ + +G+ I + Sbjct: 60 LGGMLVVFAYAALAAEPFPEAWGSRSVLGYVLVYLLGVGLVAGIFWGGWY 109 >gi|322422520|ref|YP_004222096.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|322422521|ref|YP_004222097.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525925|gb|ADW41494.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525926|gb|ADW41495.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525944|gb|ADW41507.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525947|gb|ADW41509.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525950|gb|ADW41511.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525953|gb|ADW41513.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525956|gb|ADW41515.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525968|gb|ADW41521.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525970|gb|ADW41522.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525972|gb|ADW41523.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525974|gb|ADW41524.1| NADH dehydrogenase subunit 6 [Penelopides panini] gi|320525976|gb|ADW41525.1| NADH dehydrogenase subunit 6 [Penelopides panini] Length = 173 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 6 LFFYLFSFMA-IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++F LF +A ++ V + +P Y V L+ A V G L LG F+A+ +VY+G Sbjct: 2 IYFVLFLGLAFVLGGLAVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFIALALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVA 84 ++V F++ + + A Sbjct: 62 GMLVVFVYSVALAADPFPEA 81 >gi|242624229|ref|YP_003002150.1| NADH dehydrogenase subunit 6 [Polyplectron bicalcaratum] gi|166066528|gb|ABY80783.1| NADH dehydrogenase subunit 6 [Polyplectron bicalcaratum] Length = 173 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ + V + +P Y V L+ A V G + LG F++++ ++Y+G Sbjct: 2 TYFVIFLGVCFMLGALAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFISLVLFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F++ + + A + +L+ L+VC + A+ + + Sbjct: 62 GMLVVFVYSVSLAADLYPEAWGSWR------VVGYVLSFVLVVCVGAVLGGVADSWKAGV 115 Query: 125 VFKGN 129 V + Sbjct: 116 VTVDS 120 >gi|218157342|ref|YP_002364574.1| NADH dehydrogenase subunit 6 [Trogon viridis] gi|218157370|ref|YP_002364600.1| NADH dehydrogenase subunit 6 [Eurystomus orientalis] gi|218157398|ref|YP_002364626.1| NADH dehydrogenase subunit 6 [Aegotheles cristatus] gi|163311715|gb|ABY26869.1| NADH dehydrogenase subunit 6 [Eurystomus orientalis] gi|163311729|gb|ABY26882.1| NADH dehydrogenase subunit 6 [Aegotheles cristatus] gi|166093137|gb|ABY82567.1| NADH dehydrogenase subunit 6 [Trogon viridis] Length = 172 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 47/103 (45%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 + ++ +F+V + +P Y V L+ A V G + +GA FV+++ +VY+G ++V Sbjct: 6 FFLGVCFVLGAFMVASNPSPYYGVVGLVVASVVGCGWLISVGASFVSLVLFMVYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F++ + + A + + F ++ L+ Sbjct: 66 VFVYSVSLAADPFPEALEDWRILGYVAGFALVVGVGLVSGFMG 108 >gi|124055118|gb|ABM89732.1| NADH dehydrogenase subunit 6 [Chamaeleo arabicus] Length = 169 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 V + +P + SL A V AG+ L + F++++ ++VY+G ++V F++ + M Sbjct: 15 GVASNPSPYFGGVSLALASVFGAGIMAGLSSTFISLVLMLVYLGGMLVVFVYSVAMSSDM 74 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 A + F+G L + Sbjct: 75 YPEAWGNRSVFLYVIGFLGYLFCLWWYAGGEW 106 >gi|283049271|gb|ADB07049.1| NADH dehydrogenase subunit 6 [Gallus gallus] Length = 173 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSFVSLTLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G F+ ++ +++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFVLVVWMGVVLGGL 107 >gi|262399759|gb|ACY65711.1| NADH dehydrogenase subunit 6 [Martes pennanti] Length = 177 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYVVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFIVGLLSELLTAC 105 >gi|312233519|ref|YP_004021915.1| NADH dehydrogenase subunit 6 [Crocodylus palustris] gi|268370950|gb|ACZ02717.1| NADH dehydrogenase subunit 6 [Crocodylus palustris] gi|312227677|gb|ADQ52669.1| NADH dehydrogenase subunit 6 [Crocodylus palustris] Length = 175 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L + +IS LV + Y V SL+FA + +GL + G F+ ++ L++Y+G Sbjct: 3 ITFFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSGLLVAGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104 ++V F F + D L Sbjct: 63 LLVVFAFCVGFTDDKYCELWGAGGSKVSAYVCGAGLGIG 101 >gi|19481532|gb|AAL88838.1|AF407105_1 NADH dehydrogenase subunit 6 [Anomalospiza imberbis imberbis] Length = 159 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A V G + LG F++++ ++VY+G + Sbjct: 4 FVLFLGLCFVLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|107099625|ref|ZP_01363543.1| hypothetical protein PaerPA_01000641 [Pseudomonas aeruginosa PACS2] gi|313111712|ref|ZP_07797505.1| putative membrane protein [Pseudomonas aeruginosa 39016] gi|310884007|gb|EFQ42601.1| putative membrane protein [Pseudomonas aeruginosa 39016] Length = 360 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L ++ +++G F+ T+ V V A+ FI++ + I ++ G+L Sbjct: 188 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 246 Query: 94 GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 F+G + L++ + G V+ + + Sbjct: 247 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 292 Query: 150 GFILL--LSMIGAIVL 163 ILL + +I AI L Sbjct: 293 -IILLPIVGIIAAIAL 307 >gi|242624409|ref|YP_003002324.1| NADH dehydrogenase subunit 6 [Gillichthys mirabilis] gi|207081468|gb|ACI23017.1| NADH dehydrogenase subunit 6 [Gillichthys mirabilis] Length = 173 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F ++ +V + +P + L+ G+ + GA F++++ ++Y+G ++V Sbjct: 7 IFMMGLVLGLVVVASNPSPYFGALGLVVVSGMGCGILMGHGAPFLSLVLFLIYLGGMLVV 66 Query: 70 FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-MVFSAEGELSRLVFK 127 F + + + E R G + + IL ++ F ++ E + Sbjct: 67 FAYSAALAAEPYPETLGSRSVLVNAGGYMLAILGGSGLLWGEWFGGLWFTSDEGAEFALT 126 Query: 128 GNNVENIG 135 + +G Sbjct: 127 RGDAGGVG 134 >gi|91176228|ref|YP_537169.1| NADH dehydrogenase subunit 6 [Verasper variegatus] gi|90287791|gb|ABD92811.1| NADH dehydrogenase subunit 6 [Verasper variegatus] Length = 173 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 43/113 (38%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFVMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + + G ++G + + + S Sbjct: 62 GMLVVFAYSAALAAEPYPESWGSWSVLVYGVIYMGGVMLVSGLFWGGWYESSW 114 >gi|218157272|ref|YP_002364428.1| NADH dehydrogenase subunit 6 [Agapornis roseicollis] gi|166093081|gb|ABY82515.1| NADH dehydrogenase subunit 6 [Agapornis roseicollis] Length = 171 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 40/67 (59%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L ++++ LV + +P Y V L+F V A G + LGA F++++ +VY+G ++V Sbjct: 7 LLGVGFVLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVV 66 Query: 70 FLFIIMM 76 F++ + + Sbjct: 67 FVYSVSL 73 >gi|317097105|ref|YP_004123241.1| NADH dehydrogenase subunit 6 [Rattus lutreolus] gi|290573396|gb|ADD46516.1| NADH dehydrogenase subunit 6 [Rattus lutreolus] Length = 172 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLAGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ FF+ L EL++ Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFILGFFVLGLFMELLM 102 >gi|154090919|ref|YP_001403166.1| NADH dehydrogenase subunit 6 [Reinhardtius hippoglossoides] gi|153581808|emb|CAO79732.1| NADH dehydrogenase 6 [Reinhardtius hippoglossoides] gi|153581822|emb|CAO79745.1| NADH dehydrogenase 6 [Reinhardtius hippoglossoides] gi|153581836|emb|CAO79758.1| NADH dehydrogenase 6 [Reinhardtius hippoglossoides] gi|153581850|emb|CAO79771.1| NADH dehydrogenase 6 [Reinhardtius hippoglossoides] Length = 173 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 42/113 (37%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFAMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGMLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + + G + G + + + S Sbjct: 62 GMLVVFAYSAALAAEPYPESWGSWSVMVYGVVYTGGVMLVSGLFWGGWYESSW 114 >gi|19481534|gb|AAL88839.1|AF407106_1 NADH dehydrogenase subunit 6 [Anomalospiza imberbis butleri] Length = 159 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ A V G + LG F++++ ++VY+G + Sbjct: 4 FVLFLGLCFVLGGLAVSSNPSPYYGVMGLVVAAVAGCGWLVSLGVSFMSLVLVMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|27819327|ref|NP_777301.1| NADH dehydrogenase subunit 6 [Eudyptula minor] gi|27764475|gb|AAO23039.1|AF362763_13 NADH dehydrogenase subunit 6 [Eudyptula minor] Length = 172 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G L LG FV+++ +VY+G ++V Sbjct: 7 FLGVCFVLGGLAVASNPSPYYGVIGLVLASVMGCGWLLSLGVSFVSLVLFMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKK 89 F++ + + Sbjct: 67 FVYSVALAADPFPEGWGEWP 86 >gi|288909133|dbj|BAI77363.1| NADH dehydrogenase subunit 6 [Halieutaea stellata] Length = 173 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 42/103 (40%), Gaps = 1/103 (0%) Query: 11 FSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F ++ +VV+ +P ++ L+ GL GA F++++ ++Y+G ++V Sbjct: 7 FLLFGLMGGLMVVSSNPSPYFAALGLVVVAGFGCGLLTGTGAVFLSLVLFLIYLGGMMVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + L ++ ++ ++ + Sbjct: 67 FAYSAALAAEPYPEGVGSRPVALLIVMYLFVITIAGVLFGEGW 109 >gi|115494563|ref|YP_778940.1| NADH dehydrogenase subunit 6 [Vulpes vulpes] gi|115345121|emb|CAJ57155.1| NADH dehydrogenase subunit 6 [Vulpes vulpes] Length = 175 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S VT +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFVTKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|34538609|ref|NP_904339.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|62198725|ref|YP_220561.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|128818|sp|P03925|NU6M_MOUSE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|13850|emb|CAA24089.1| unnamed protein product [Mus musculus] gi|896301|gb|AAB48655.1| protein 6 [Mus musculus] gi|7770110|dbj|BAA95627.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|7798611|dbj|BAA95651.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|7804465|dbj|BAA95664.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|8096303|dbj|BAA95806.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|10336616|dbj|BAB13812.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|32892277|gb|AAP89034.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|33115116|gb|AAN85133.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|34556003|emb|CAD33918.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|34556017|emb|CAD54443.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|38488910|gb|AAR21206.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|41386996|gb|AAS01437.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|41387010|gb|AAS01450.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|41387024|gb|AAS01463.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|41387038|gb|AAS01476.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|62461721|gb|AAX83023.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|68349598|gb|AAY96700.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|68349612|gb|AAY96713.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|74148809|dbj|BAE24323.1| unnamed protein product [Mus musculus] gi|74209780|dbj|BAE23604.1| unnamed protein product [Mus musculus] gi|118200625|gb|ABK79104.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200639|gb|ABK79117.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200653|gb|ABK79130.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200667|gb|ABK79143.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200681|gb|ABK79156.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200695|gb|ABK79169.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200709|gb|ABK79182.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200723|gb|ABK79195.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200737|gb|ABK79208.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200751|gb|ABK79221.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200765|gb|ABK79234.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200779|gb|ABK79247.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|118200821|gb|ABK79286.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|161824331|gb|ABX79713.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|161824373|gb|ABX79752.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|167783113|gb|ACA01535.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|221664489|gb|ACM24370.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664503|gb|ACM24383.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664517|gb|ACM24396.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664531|gb|ACM24409.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664545|gb|ACM24422.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664559|gb|ACM24435.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664587|gb|ACM24461.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664601|gb|ACM24474.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664615|gb|ACM24487.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664629|gb|ACM24500.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664643|gb|ACM24513.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664657|gb|ACM24526.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664671|gb|ACM24539.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664685|gb|ACM24552.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664699|gb|ACM24565.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664713|gb|ACM24578.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664727|gb|ACM24591.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664741|gb|ACM24604.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664755|gb|ACM24617.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664769|gb|ACM24630.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664783|gb|ACM24643.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664797|gb|ACM24656.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664811|gb|ACM24669.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664825|gb|ACM24682.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664839|gb|ACM24695.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|221664853|gb|ACM24708.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|225423209|gb|ACN91106.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|259020086|gb|ACV90283.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|259020100|gb|ACV90296.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|259020114|gb|ACV90309.1| NADH dehydrogenase subunit 6 [Mus musculus domesticus] gi|312844600|gb|ADR03167.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|321401321|gb|ADW83077.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|325511955|gb|ADZ23177.1| NADH dehydrogenase subunit 6 [Mus musculus] gi|223448|prf||0806162M protein URF6 Length = 172 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FVLSSLFLVGCLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + M + LG +G++ ++C N+ Sbjct: 66 VFGYTTAMATEEYPETWG-SNWLILGFLVLGVIMEVFLICVLNY 108 >gi|25057841|ref|NP_740073.1| NADH dehydrogenase subunit 6 [Caranx melampygus] gi|25006080|dbj|BAC23694.1| NADH dehydrogenase subunit 6 [Caranx melampygus] Length = 173 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YLF F + V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLFLFCFVFGLIAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 ++V F + + AEP + + ++A LIV + + + E S Sbjct: 62 GMLVVFAYSAAL------AAEPYPETWGSRPVTMYMIAYVLIVVVVSGLFWGGWYESSW 114 >gi|193290208|ref|YP_002000325.1| NADH dehydrogenase subunit 6 [Ochotona curzoniae] gi|186461001|gb|ABP99058.1| NADH dehydrogenase subunit 6 [Ochotona curzoniae] Length = 174 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 2/101 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L S + + + +PIY LI + G+ L GA F+ ++ +VY+G ++V Sbjct: 7 LLSMVFVAGFVGFSSKPSPIYGGLCLIVSGGVGCGIILSYGASFLGLMMFLVYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +F E E + + L ELI+ Sbjct: 66 -VFGYTTAMATEEYPESWGSNVVVLGTLVAGLLMELILVGL 105 >gi|116054384|ref|YP_788829.1| hypothetical protein PA14_08450 [Pseudomonas aeruginosa UCBPP-PA14] gi|115589605|gb|ABJ15620.1| putative membrane protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 360 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L ++ +++G F+ T+ V V A+ FI++ + I ++ G+L Sbjct: 188 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 246 Query: 94 GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 F+G + L++ + G V+ + + Sbjct: 247 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 292 Query: 150 GFILL--LSMIGAIVL 163 ILL + +I AI L Sbjct: 293 -IILLPIVGIIAAIAL 307 >gi|295641129|gb|ADG22675.1| NADH dehydrogenase subunit 6 [Mustela frenata] Length = 177 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIISGAIGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + + + + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYT-TAMAAEQYPEVWVSNKAVLGAFIVGLLSELLTAC 105 >gi|195934708|ref|YP_002120644.1| NADH dehydrogenase subunit 6 [Ailurus fulgens] gi|155368567|emb|CAM98583.1| NADH dehydrogenase subunit 6 [Ailurus fulgens] Length = 175 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +IS + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVISFVGFSSKPSPIYGGLVLIVSGAVGCGIILSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFILGLLSELLTAC 105 >gi|5835049|ref|NP_007106.1|ND6_10470 NADH dehydrogenase subunit 6 [Didelphis virginiana] gi|730210|sp|P41315|NU6M_DIDMA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|555591|emb|CAA82688.1| NADH dehydrogenase subunit 6 [Didelphis virginiana] Length = 168 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 45/107 (42%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + Y+ S + +I + +PIY SL+ + G+ + L F+ ++ +VY Sbjct: 1 MKMMTIYIISLLLMIGFVAFASKPSPIYGGLSLVVSGGLGCGMVVSLEDVFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + M + F+ F+ +L + Sbjct: 61 LGGMLVVFGYTTAMATEEYPETWVGNVVAFIMLLFVLLLQVGWYFMS 107 >gi|157367438|gb|ABV45573.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] Length = 175 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 43/103 (41%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +P+Y SLI + G+ + G F++++ +VY+G ++V Sbjct: 6 FIMSVLYVVGFIGFSSKPSPVYGGMSLIVSGGLGCGIIMSSGGSFLSLVVFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + I M + ++ +IV + Sbjct: 66 VFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFS 108 >gi|239997577|gb|ACS37090.1| NADH dehydrogenase subunit 6 [Grandisonia alternans] Length = 167 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F FS + +I + V + +P ++ L+ + + +G F++++ ++Y Sbjct: 1 MEYMVFLGFSGL-VIGTIGVASNPSPYFAALGLVVTAAAGCWVLISMGMSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92 +G ++V F + M A F Sbjct: 60 LGGMLVVFAYSSAMAAEPYPDAWGNWSVVF 89 >gi|207559992|gb|ACI24586.1| NADH dehydrogenase subunit 6 [Ovibos moschatus] Length = 175 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYLVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-AVLGAFVTGLLMEFLMV 104 >gi|21908058|ref|NP_663803.1|ND6_16534 NADH dehydrogenase subunit 6 [Muntiacus reevesi] gi|116235413|ref|YP_794160.1| NADH dehydrogenase subunit 6 [Muntiacus reevesi micrurus] gi|21842402|gb|AAM77766.1|AF527537_13 NADH dehydrogenase subunit 6 [Muntiacus reevesi] gi|116006455|gb|ABJ51761.1| NADH dehydrogenase subunit 6 [Muntiacus reevesi micrurus] Length = 175 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEIWLSSK-AVLGAFITGLLMEVAMV 104 >gi|327492679|ref|YP_004347572.1| NADH dehydrogenase subunit 6 [Lagocephalus laevigatus] gi|327392586|dbj|BAK10014.1| NADH dehydrogenase subunit 6 [Lagocephalus laevigatus] Length = 172 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 36/92 (39%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 VV+ +P + SL+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 17 IAVVSNPSPYFGALSLVMVAGFGCGILVWHGGSFLSLVLFLIYLGGMLVVFAYSAALAAE 76 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 ++G++ I+ Sbjct: 77 PYPETFGSWPVFVCMLMYLGVVVVMFILFLGG 108 >gi|110747785|gb|ABG89400.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747789|gb|ABG89403.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747793|gb|ABG89406.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747797|gb|ABG89409.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747809|gb|ABG89418.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747813|gb|ABG89421.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747817|gb|ABG89424.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747821|gb|ABG89427.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747833|gb|ABG89436.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747837|gb|ABG89439.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747845|gb|ABG89445.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747849|gb|ABG89448.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747861|gb|ABG89457.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747877|gb|ABG89469.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747901|gb|ABG89487.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747913|gb|ABG89496.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747917|gb|ABG89499.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747945|gb|ABG89520.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747957|gb|ABG89529.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747961|gb|ABG89532.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747969|gb|ABG89538.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748001|gb|ABG89562.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748005|gb|ABG89565.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748009|gb|ABG89568.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748013|gb|ABG89571.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748025|gb|ABG89580.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748029|gb|ABG89583.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748037|gb|ABG89589.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748049|gb|ABG89598.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748073|gb|ABG89616.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748077|gb|ABG89619.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748081|gb|ABG89622.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748085|gb|ABG89625.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748105|gb|ABG89640.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748109|gb|ABG89643.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748125|gb|ABG89655.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748129|gb|ABG89658.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748133|gb|ABG89661.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748145|gb|ABG89670.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748157|gb|ABG89679.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748165|gb|ABG89685.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748181|gb|ABG89697.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748185|gb|ABG89700.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748193|gb|ABG89706.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748213|gb|ABG89721.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|218783291|dbj|BAH03669.1| NADH dehydrogenase subunit 6 [Loxodonta africana] Length = 175 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + S + ++ + +P+Y SL+ + G+ + G F+ ++ +VY Sbjct: 1 MMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMGSGGSFLGLVVFLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + I M + LG+F +G+L ++ Sbjct: 60 LGGMMVVFGYTIAMATEEYPETWGSNV-VVLGAFLVGLLMEVFMIMWL 106 >gi|154760708|ref|YP_001425509.1| NADH dehydrogenase subunit 6 [Osteolaemus tetraspis] gi|154425195|emb|CAM35770.1| NADH dehydrogenase subunit 6 [Osteolaemus tetraspis] Length = 175 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F++ + +IS LV Y V SL+FA + + L + G F+ ++ L++Y+G + Sbjct: 4 MFFILCCLMMISVVLVAFGVTIHYGVVSLLFATMLGSSLLVAGGGSFMPLVVLLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102 +V F F + D L + L Sbjct: 64 LVVFAFCVGFTDDKYCEFWGSGGSKGLAYIWWAGLG 99 >gi|56548745|ref|YP_161180.1| NADH dehydrogenase subunit 6 [Metachirus nudicaudatus] gi|56398474|emb|CAG26353.1| NADH dehydrogenase subunit 6 [Metachirus nudicaudatus] Length = 168 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 45/107 (42%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + Y+ S + +I + +PIY SL+ + G+ + L F+ ++ +VY Sbjct: 1 MKMMTIYIISLLLMIGFVAFASKPSPIYGGLSLVVSGGLGCGMVVSLEDVFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + M + F+ F+ +L + Sbjct: 61 LGGMLVVFGYTTAMATEEYPETWVGNVVAFIMLLFVLLLQVGWYFMS 107 >gi|21449914|ref|NP_659311.1| NADH dehydrogenase subunit 6 [Macroscelides proboscideus] gi|21425378|emb|CAD13406.1| NADH dehydrogenase subunit 6 [Macroscelides proboscideus] Length = 175 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L S + ++ V + +P++ SLI + GL + G F+ ++ +VY+G ++V Sbjct: 7 LLSMVFVLGVVGVSSKPSPVFGGVSLIISGGAGCGLIVSSGGSFLGLMVFLVYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 +F E E + + + EL+V FS EG + N Sbjct: 66 -VFGYTTAMATEEYPEAWVSSKVVLWSVVIGVFVELVVLMLLASGFSYEGYGMVVGQYSN 124 Query: 130 NVENIG 135 NV G Sbjct: 125 NVVEYG 130 >gi|114705421|ref|ZP_01438329.1| putative cation efflux system protein [Fulvimarina pelagi HTCC2506] gi|114540206|gb|EAU43326.1| putative cation efflux system protein [Fulvimarina pelagi HTCC2506] Length = 788 Score = 38.1 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + + VV RN + ++ SL A +F+L GA +A +V +V++ Sbjct: 611 WIILGLIVFGILAVVVSRNRLQAIVSLGIQGYAVAFIFMLQGAPDLAFTQFMVETLSVVI 670 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 ++M + + ++ R L IG+LA +V S Sbjct: 671 L---ALVMTRLKLSPSDHRPLAQKLPDATIGVLAGIGFGLFLLAVVQS 715 >gi|115494605|ref|YP_778784.1| NADH dehydrogenase subunit 6 [Mirounga leonina] gi|37620580|gb|AAQ95099.1| NADH dehydrogenase subunit 6 [Mirounga leonina] gi|115344925|emb|CAJ56973.1| NADH dehydrogenase subunit 6 [Mirounga leonina] Length = 175 Score = 38.1 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVISFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFVMGLLSELLLAC 105 >gi|37620578|gb|AAQ95098.1| NADH dehydrogenase subunit 6 [Mirounga angustirostris] Length = 175 Score = 38.1 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVVSFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKAVLGAFIMGLLSELLLAC 105 >gi|28867229|ref|NP_789859.1| NADH dehydrogenase subunit 6 [Muntiacus crinifrons] gi|28569629|gb|AAO43649.1| NADH dehydrogenase subunit 6 [Muntiacus crinifrons] Length = 175 Score = 38.1 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEIWLSSK-AVLGAFITGLLMEIAMV 104 >gi|170676093|ref|YP_001742116.1| NADH dehydrogenase subunit 6 [Spilogale putorius] gi|155368581|emb|CAM98596.1| NADH dehydrogenase subunit 6 [Spilogale putorius] Length = 175 Score = 38.1 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY +LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVMGFVGFSSKPSPIYGGLALIISGGVGCAIVLCFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M K L +F +G++ L+VC Sbjct: 61 LGGMLVVFGYTTAMATEQYPEVWVSSK-IVLWAFIMGLMLESLVVC 105 >gi|296940306|ref|YP_003667985.1| NADH dehydrogenase subunit 6 [Acryllium vulturinum] gi|224503980|gb|ACN53565.1| NADH dehydrogenase subunit 6 [Acryllium vulturinum] Length = 173 Score = 38.1 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ + V + +P Y V L+ A V G + LG F++++ ++Y+G Sbjct: 2 TYFMIFLGVSFMLGTLAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFISLVLFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR 86 >gi|83309098|ref|YP_423999.1| NADH dehydrogenase subunit 6 [Echymipera rufescens australis] gi|55416229|gb|AAV50094.1| NADH dehydrogenase subunit 6 [Echymipera rufescens australis] Length = 166 Score = 38.1 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +P+Y SL+ + + + LG F+ ++ +VY Sbjct: 1 MKMMVIFLFSVLLIFGFVAFASKPSPVYGGLSLVASGGFGCAIVVSLGDTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 +G ++V F + M + + L+ +I + +SA GE+ Sbjct: 61 LGGMLVVFGYTAAMATEEYPET---------WVGNMVALSMLMIALLMEIIWYSATGEV 110 >gi|213965057|ref|ZP_03393255.1| NADH ubiquinone oxidoreductase subunit 5 [Corynebacterium amycolatum SK46] gi|213952171|gb|EEB63555.1| NADH ubiquinone oxidoreductase subunit 5 [Corynebacterium amycolatum SK46] Length = 1061 Score = 38.1 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 3/121 (2%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 + + II++ +N + V + A +F + GA +A+ L+V + ++ F+ Sbjct: 643 ALIMIIAALAATQQKNRLSGVILVGVTGYGLAIIFAMYGAPDLALTQLLVETVS-MIVFV 701 Query: 72 FIIMMLDIDIEVAEPR--KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 ++ L + PR + R +L + + G++ L Sbjct: 702 LVLRTLSPRAPASNPRWIRHRAWLAIAVGVTVPVLAAYAMGSRRTEPISGDIPPLAHDIG 761 Query: 130 N 130 + Sbjct: 762 H 762 >gi|209886965|ref|YP_002290829.1| NADH dehydrogenase subunit 6 [Bungarus fasciatus] gi|170774105|gb|ACB36676.1| NADH dehydrogenase subunit 6 [Bungarus fasciatus] Length = 164 Score = 38.1 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 9 YLFSFMAIISSFLVVTVRN---PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 YLF F+ + VV + P + V +L+ L +LLG F A+I +VY+G Sbjct: 3 YLFGFILVFVVLGVVALSMTFAPYHGVIALMGVSFFCCVLMVLLGRTFAALIMYIVYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F + + + + + ++ L +V+S +L + Sbjct: 63 LVVVFGYCVSIEKGKNGFFKVNGFSYVIVFLIASLV--SLYSDFGGLLVYSNWEDLVCME 120 Query: 126 FKGNNV 131 G++V Sbjct: 121 VNGSSV 126 >gi|280978362|ref|YP_003345293.1| NADH dehydrogenase subunit 6 [Hoplunnis punctata] gi|271280776|dbj|BAI53469.1| NADH dehydrogenase subunit 6 [Hoplunnis punctata] Length = 172 Score = 38.1 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 3/109 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F F M ++ V + +P ++ L+ + G+ G FV+++ ++Y Sbjct: 1 MSYFIFLFF-VMFVLGVIGVASNPSPYFAALGLVLSAGGGCGILAGYGGSFVSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V +F E G +L L VC Sbjct: 60 LGGMLV--VFAYSAALAAEPYPEGWGDWSVFGRILGCVLIVFLGVCLGG 106 >gi|156766018|ref|YP_001434574.1| NADH dehydrogenase subunit 6 [Asymmetron inferum] gi|156713105|dbj|BAF76605.1| NADH dehydrogenase subunit 6 [Asymmetron inferum] Length = 166 Score = 38.1 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 45/103 (43%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L +FM ++++ +V+ +P + ++ + + L F AMI +++Y+G ++V Sbjct: 4 LLNFMILLTAMMVIRATSPYFGALAMAMLSLLISITMFQLNLIFPAMILMLIYLGGMLVV 63 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F++ + + F+ G LA + NF Sbjct: 64 FVYSTAYSADLMPLPVNMTLTLFIAISGTGFLAIFSLSPMENF 106 >gi|19481570|gb|AAL88857.1|AF407124_1 NADH dehydrogenase subunit 6 [Prunella modularis] Length = 159 Score = 38.1 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 +G ++V F++ + + E G +G F +L + + S Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPEAWADWGVVGYGFGMVLVIVVGLAVGGVSGLS 111 >gi|302632662|ref|YP_003848758.1| NADH dehydrogenase subunit 6 [Cuora pani] gi|259122043|gb|ACV92117.1| NADH dehydrogenase subunit 6 [Cuora pani] Length = 174 Score = 38.1 bits (88), Expect = 0.64, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + ++ V + F G +++ I+ ++ ++S EG + V Sbjct: 64 LVIFAYSSALMAEPFPVGWVSLEGVFYGLYYLFII---MVFMQMGCHLWSIEGIGADTVD 120 Query: 127 KGN 129 G Sbjct: 121 AGG 123 >gi|237869096|ref|YP_002907424.1| NADH dehydrogenase subunit 6 [Anyperodon leucogrammicus] gi|237653089|gb|ACR09345.1| NADH dehydrogenase subunit 6 [Anyperodon leucogrammicus] Length = 173 Score = 38.1 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 6/104 (5%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 I+ + V + +P + L+ G+ + G+ F+A+I ++Y+G ++V F + Sbjct: 13 IVGAIAVASNPSPFFGALGLVMVAGVGCGVLVEYGSPFLALILFLIYLGGMLVVFAYSAA 72 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 + AEP + + + + ++V M + G Sbjct: 73 L------AAEPYPESWLNPAIVVYMCCYAVVVMVGVSMFWHEWG 110 >gi|5836000|ref|NP_008762.1|ND6_15098 NADH dehydrogenase subunit 6 [Cavia porcellus] gi|5679809|emb|CAB51829.1| NADH dehydrogenase subunit 6 [Cavia porcellus] Length = 176 Score = 38.1 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M Y S + ++ + +P+Y +L+ + L L G F+ ++ ++Y Sbjct: 1 MAVNVMYFLSILFVMGFVCLSAKPSPVYGGLTLVVSGGIGCMLILSQGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + + E + G L LI+ +++ ++ Sbjct: 61 LGGMMVVFGYTTALAT------ERYPETWASSMIIWGTLLLGLIMEFLLLYWWASNDQIE 114 Query: 123 RLV 125 LV Sbjct: 115 ILV 117 >gi|297624893|ref|YP_003706327.1| multisubunit sodium/proton antiporter subunit MrpA [Truepera radiovictrix DSM 17093] gi|297166073|gb|ADI15784.1| multisubunit sodium/proton antiporter, MrpA subunit (2.A.63.1) [Truepera radiovictrix DSM 17093] Length = 775 Score = 38.1 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + + ++ S VV R+ + +V +L A + A LF+L A +A+ L V +VI+ Sbjct: 601 WVLAILCLLGSVFVVLARSRLAAVAALGIAGYSLALLFVLFSAPDLALTQLFVETLSVII 660 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 L II + + + KR + + +LA LI + ++ Sbjct: 661 LTLIIIHLPQLLRDDEMHDSKRPVVRDVSVSVLAGLLITALVWSVTSLPLDRAVPAFYEA 720 Query: 129 NN 130 N+ Sbjct: 721 NS 722 >gi|159524422|ref|YP_001542740.1| NADH dehydrogenase subunit 6 [Tremarctos ornatus] gi|121592356|gb|ABM63289.1| NADH dehydrogenase subunit 6 [Tremarctos ornatus] Length = 175 Score = 38.1 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S ++ +P+Y LI + G+ L G F+ ++ ++Y Sbjct: 1 MVTYTVFILSVGFVMGFVGFSXKPSPVYGGLVLIVSGGVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M K LG+F G+L+ L+VC Sbjct: 61 LGGMLVVFGYTTAMATEQYPEVWISNK-AVLGAFIAGLLSELLVVC 105 >gi|108793502|ref|YP_636982.1| NADH dehydrogenase subunit 6 [Aspasma minima] gi|25006192|dbj|BAC23798.1| NADH dehydrogenase subunit 6 [Aspasma minima] Length = 173 Score = 38.1 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 7/122 (5%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + +I V +V +P + L+ A + G+ L G F+++I ++Y+G + Sbjct: 4 IFLVPIGALVIGLVGVASVPSPYFGALGLVLAAGGSCGVLLSQGGTFLSLILFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + +A + + ++ FMVF + + Sbjct: 64 LVVFAY-------TAAIAADPYPEAWGSLSVCCLGGGYMMGIWVGFMVFKEQWGHAWWTI 116 Query: 127 KG 128 G Sbjct: 117 LG 118 >gi|198434256|ref|XP_002126573.1| PREDICTED: similar to G-protein coupled receptor GRL101 precursor-like [Ciona intestinalis] Length = 1016 Score = 38.1 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 20/154 (12%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFA----FVNAAGLFLLLGAEFVAMITLVV 61 + F+L +A++ + +V T SV LI + + + L L+ V+ + + Sbjct: 663 VIFWLLGSLALLGNIVVFTT-----SVLELIISGNTDLLKTSFLTFLINLS-VSDSLMGI 716 Query: 62 YVGAVI-VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI-LAAELIVCASNFMVFSAEG 119 Y+ A+ V F D + I ++A ++ + F +FS Sbjct: 717 YLLAISGVGVQFSGSYCHHDAQWRSSSLCSFLGTLVVISTEVSALIMATMATFRLFSVY- 775 Query: 120 ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFIL 153 K NV+N+G ++ + A+ + G +L Sbjct: 776 ----FPIKMRNVKNLGYIIPSICAW---LIGILL 802 >gi|226463983|ref|YP_002734940.1| NADH dehydrogenase subunit 6 [Chamaeleo arabicus] gi|124055104|gb|ABM89719.1| NADH dehydrogenase subunit 6 [Chamaeleo arabicus] Length = 169 Score = 38.1 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 V + +P + SL A V AG+ L + F++++ ++VY+G ++V F++ + M Sbjct: 15 GVASNPSPYFGGVSLALASVFGAGIMAGLSSTFISLVLMLVYLGGMLVVFVYSVAMSSDM 74 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 A + F+G L + Sbjct: 75 YPEAWGNRSVFLYVVGFLGYLFCLWWYAGGEW 106 >gi|60685404|gb|AAX34590.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685409|gb|AAX34594.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685414|gb|AAX34598.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685419|gb|AAX34602.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685424|gb|AAX34606.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685429|gb|AAX34610.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685434|gb|AAX34614.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685439|gb|AAX34618.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685444|gb|AAX34622.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685449|gb|AAX34626.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685454|gb|AAX34630.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685459|gb|AAX34634.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685464|gb|AAX34638.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685469|gb|AAX34642.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685474|gb|AAX34646.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685479|gb|AAX34650.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685484|gb|AAX34654.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685489|gb|AAX34658.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685494|gb|AAX34662.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685499|gb|AAX34666.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685504|gb|AAX34670.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685509|gb|AAX34674.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685514|gb|AAX34678.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685519|gb|AAX34682.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685524|gb|AAX34686.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685529|gb|AAX34690.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685534|gb|AAX34694.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685539|gb|AAX34698.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685544|gb|AAX34702.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685549|gb|AAX34706.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685554|gb|AAX34710.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685559|gb|AAX34714.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685564|gb|AAX34718.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685569|gb|AAX34722.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685574|gb|AAX34726.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685579|gb|AAX34730.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685584|gb|AAX34734.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685589|gb|AAX34738.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685594|gb|AAX34742.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685599|gb|AAX34746.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685604|gb|AAX34750.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685609|gb|AAX34754.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685614|gb|AAX34758.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685619|gb|AAX34762.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685624|gb|AAX34766.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685629|gb|AAX34770.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685634|gb|AAX34774.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685639|gb|AAX34778.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685644|gb|AAX34782.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685649|gb|AAX34786.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685654|gb|AAX34790.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685659|gb|AAX34794.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685664|gb|AAX34798.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685669|gb|AAX34802.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685674|gb|AAX34806.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685679|gb|AAX34810.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685684|gb|AAX34814.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685689|gb|AAX34818.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685694|gb|AAX34822.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685699|gb|AAX34826.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685704|gb|AAX34830.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685709|gb|AAX34834.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685714|gb|AAX34838.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685719|gb|AAX34842.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685724|gb|AAX34846.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685729|gb|AAX34850.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685734|gb|AAX34854.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685739|gb|AAX34858.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685744|gb|AAX34862.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685749|gb|AAX34866.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685754|gb|AAX34870.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685759|gb|AAX34874.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685764|gb|AAX34878.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685769|gb|AAX34882.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685774|gb|AAX34886.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685779|gb|AAX34890.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685784|gb|AAX34894.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685789|gb|AAX34898.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685794|gb|AAX34902.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685799|gb|AAX34906.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685804|gb|AAX34910.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685809|gb|AAX34914.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685814|gb|AAX34918.1| NADH dehydrogenase subunit 6 [Elephas maximus] gi|60685819|gb|AAX34922.1| NADH dehydrogenase subunit 6 [Elephas maximus] Length = 183 Score = 38.1 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 VM + F + S + ++ + +P+Y SL+ + G+ + G F+ ++ +V Sbjct: 8 VMMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMSSGGSFLGLVVFLV 66 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 Y+G ++V +F E E + S F+ L E+ + F Sbjct: 67 YLGGMMV--VFGYTTAMATEEYPETWGSNVVVLSAFLVGLLMEVFMIVWLF 115 >gi|49146725|ref|YP_025961.1| NADH dehydrogenase subunit 6 [Strigops habroptilus] gi|37960707|gb|AAP47805.1| NADH dehydrogenase subunit 6 [Strigops habroptilus] Length = 171 Score = 38.1 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 39/72 (54%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++++ V + +P Y V L+F + G + LGA FV+++ +VY+G Sbjct: 2 AYFVLFLGIGFVLAALAVASNPSPYYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|5835565|ref|NP_008417.1|ND6_13947 NADH dehydrogenase subunit 6 [Ovis aries] gi|6093588|sp|O78757|NU6M_SHEEP RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|3366633|gb|AAD10106.1| NADH dehydrogenase subunit 6 [Ovis aries] Length = 175 Score = 38.1 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFLMV 104 >gi|322422702|ref|YP_004222414.1| NADH dehydrogenase subunit 6 [Mauremys megalocephala] gi|296040860|gb|ADG85403.1| NADH dehydrogenase subunit 6 [Mauremys megalocephala] Length = 174 Score = 38.1 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 55/108 (50%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF + G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALFGCGVLVGMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +V F + ++ V+ + F G +++ I+ A +++ + + + Sbjct: 64 LVIFAYSSALMAEPFPVSWMSLEGVFYGLYYLFIVLAFVMMDSDLWSI 111 >gi|86264057|gb|ABC87766.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|86264059|gb|ABC87767.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|158187247|gb|ABW22865.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|158187275|gb|ABW22891.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|158187289|gb|ABW22904.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|158187303|gb|ABW22917.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|158187317|gb|ABW22930.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|298110633|gb|ADI57604.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|298110647|gb|ADI57617.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|298110661|gb|ADI57630.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|298110675|gb|ADI57643.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|298110773|gb|ADI57734.1| NADH dehydrogenase subunit 6 [Ovis aries musimon] gi|298110787|gb|ADI57747.1| NADH dehydrogenase subunit 6 [Ovis aries musimon] Length = 175 Score = 38.1 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFLMV 104 >gi|121582447|ref|YP_980176.1| NADH dehydrogenase subunit 6 [Takydromus tachydromoides] gi|121309345|dbj|BAF43964.1| NADH dehydrogenase subunit 6 [Takydromus tachydromoides] Length = 171 Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 1/113 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F +++ V + +P + SL+ A GL +LLG+ FV+++ L++Y+G ++V Sbjct: 7 FFMVGLVLAFVSVASNPSPYFGAGSLVVAASFGCGLLVLLGSSFVSLVLLLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 F + + + + G+ G++ + + L + + F+ F G S Sbjct: 67 FAYSVALASDPYPESWGNVW-GYFGAYVVMVFFLVLSLGDAGFVGFGVMGADS 118 >gi|223972329|dbj|BAH23365.1| NADH dehydrogenase subunit 6 [Hippopotamus amphibius] Length = 176 Score = 38.1 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+M + F + S + +I + +PIY LI + G+ L G F+ ++ + Sbjct: 1 MMMTYVVF-ILSIVFVIGFIGFSSKPSPIYGGLGLIVSGGAGCGMVLNFGGSFLGLMVFL 59 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 VY+G ++V F + M + LG+F +G++ L V Sbjct: 60 VYLGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFLLGLMMEFLAVL 106 >gi|37496459|emb|CAD21997.1| NADH dehydrogenase subunit 6 [Elephas maximus] Length = 175 Score = 38.1 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + S + ++ + +P+Y SL+ + G+ + G F+ ++ +VY Sbjct: 1 MMYIVF-IMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMSSGGSFLGLVVFLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V +F E E + S F+ L E+ + F Sbjct: 60 LGGMMV--VFGYTTAMATEEYPETWGSNVVVLSAFLVGLLMEVFMIVWLF 107 >gi|18643242|gb|AAL76252.1| NADH dehydrogenase subunit 6 [Gracula religiosa religiosa] Length = 83 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F I+ V + +P Y V L+ A V G + LG FVA++ ++VY Sbjct: 2 MEFVMF--LGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLMSLGVSFVALVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|6137813|ref|NP_009290.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|62287136|sp|Q9TA18|NU6M_LOXAF RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|5852115|emb|CAA12149.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|83415416|gb|ABC17915.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747801|gb|ABG89412.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747805|gb|ABG89415.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747825|gb|ABG89430.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747829|gb|ABG89433.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747841|gb|ABG89442.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747853|gb|ABG89451.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747857|gb|ABG89454.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747865|gb|ABG89460.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747869|gb|ABG89463.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747893|gb|ABG89481.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747905|gb|ABG89490.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747921|gb|ABG89502.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747925|gb|ABG89505.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747929|gb|ABG89508.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747933|gb|ABG89511.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747937|gb|ABG89514.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747941|gb|ABG89517.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747949|gb|ABG89523.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747953|gb|ABG89526.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747977|gb|ABG89544.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747981|gb|ABG89547.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747997|gb|ABG89559.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748017|gb|ABG89574.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748033|gb|ABG89586.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748041|gb|ABG89592.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748057|gb|ABG89604.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748061|gb|ABG89607.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748069|gb|ABG89613.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748089|gb|ABG89628.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748113|gb|ABG89646.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748117|gb|ABG89649.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748121|gb|ABG89652.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748137|gb|ABG89664.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748141|gb|ABG89667.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748149|gb|ABG89673.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748161|gb|ABG89682.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748169|gb|ABG89688.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748177|gb|ABG89694.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748189|gb|ABG89703.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748197|gb|ABG89709.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748205|gb|ABG89715.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748209|gb|ABG89718.1| NADH dehydrogenase subunit 6 [Loxodonta africana] Length = 175 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +P+Y SL+ + G+ + G F+ ++ +VY+G ++V Sbjct: 6 FIMSVLYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIIMGSGGSFLGLVVFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 F + I M + LG+F +G+L ++ Sbjct: 66 VFGYTIAMATEEYPETWGSNV-VVLGAFLVGLLMEVFMIMWL 106 >gi|207560020|gb|ACI24612.1| NADH dehydrogenase subunit 6 [Rupicapra pyrenaica] Length = 175 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKVVLGAFVTGLLMEFLMV 104 >gi|11545720|ref|NP_071464.1| NADH dehydrogenase subunit 6 [Sardinops melanostictus] gi|11526570|dbj|BAB18613.1| NADH dehydrogenase subunit 6 [Sardinops melanostictus] Length = 172 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y++ +I ++T +P ++ L+ + + G+ F+A++ ++Y+G ++V Sbjct: 5 YIWLAGFVIGVIGIMTNPSPYFAALGLVMCSAATCCILVFGGSTFLAVVLFLIYLGGMLV 64 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 F F + E + + +L L+V S Sbjct: 65 VFAFTAALAA--DPFPEGTLEAAPYEFLILVVLGISLLVAQS 104 >gi|280978488|ref|YP_003345410.1| NADH dehydrogenase subunit 6 [Ariosoma shiroanago] gi|271280633|dbj|BAI53418.1| NADH dehydrogenase subunit 6 [Ariosoma shiroanago] Length = 171 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 + ++ + V + +P Y+ L+ A G+ + G F++++ +VY+G ++V F + Sbjct: 10 VILVLGAVGVASNPSPYYAALGLVMAAAGGCGILIGCGGFFISLVLFLVYLGGMLVVFGY 69 Query: 73 IIMML--DIDIEVAEPRKKRGFLGSFFIGILAAEL 105 ++ D E E +G I +L L Sbjct: 70 TAALVSDDYPEEFMEWSVAYRLVGCLLITVLLDSL 104 >gi|86264062|gb|ABC87768.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|158187261|gb|ABW22878.1| NADH dehydrogenase subunit 6 [Ovis aries] Length = 175 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFLMV 104 >gi|207559852|gb|ACI24456.1| NADH dehydrogenase subunit 6 [Capra ibex] Length = 175 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGAGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFITGLLMEFLMV 104 >gi|147743076|ref|YP_001218741.1| NADH dehydrogenase subunit 6 [Parajulis poecilepterus] gi|144925941|gb|ABP03893.1| NADH dehydrogenase subunit 6 [Parajulis poecilepterus] Length = 173 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F ++ V + +P ++ L+ G+ + G F++++ ++Y+G ++V Sbjct: 7 MFLIGLVVGLVAVASNPSPYFAALGLVVVSGMGCGILVSSGGPFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 F + + AEP + F G + ++ +IV + + E+S + Sbjct: 67 FAYSAAL------AAEPYPEGWFSGPVVMYMVVYLVIVTLMSVPFWGEWFEVSWVPVD 118 >gi|108793377|ref|YP_637100.1| NADH dehydrogenase subunit 6 [Gavia pacifica] gi|108755482|dbj|BAE95717.1| NADH dehydrogenase subunit 6 [Gavia pacifica] Length = 173 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F S + V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVVFLSVCFALGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|157736045|ref|YP_001491498.1| NADH dehydrogenase subunit 6 [Centropyge loricula] gi|157679356|dbj|BAF80413.1| NADH dehydrogenase subunit 6 [Centropyge loricula] Length = 172 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 39/103 (37%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LFS + V + +P ++ L+ GL LG F++MI ++Y+G ++V Sbjct: 7 LFSVGLVSGLVAVASNPSPYFAALGLVVVSGFGCGLLAALGGSFLSMILFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + + G+ I+ + Sbjct: 67 FAYSAALAAEPFPETWGHETVVAYIYMYFGVSYCLSILFGLVW 109 >gi|131839186|ref|YP_001096039.1| NADH dehydrogenase subunit 6 [Procyon lotor] gi|130381983|dbj|BAF49014.1| NADH dehydrogenase subunit 6 [Procyon lotor] gi|152962717|dbj|BAF73955.1| NADH dehydrogenase subunit 6 [Procyon lotor] gi|155368595|emb|CAM98609.1| NADH dehydrogenase subunit 6 [Procyon lotor] Length = 177 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + + + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVFCFVGFCSKPSPIYGGLVLIVSGGIGCGIVLSYGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L SF +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WASNKAVLASFIVGVLSELLTAC 105 >gi|14010664|ref|NP_114236.1| NADH dehydrogenase subunit 6 [Conger myriaster] gi|13928155|dbj|BAB47004.1| NADH dehydrogenase subunits 6 [Conger myriaster] Length = 171 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 2/105 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 LF LF + + V +P YS+F L+ + + + G FV++I ++Y+G Sbjct: 3 LFIVLFLVLMTFGAVCVSCNPSPFYSIFGLVLSTLAGCMMLASYGGTFVSLILFLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F+F + + E + L F + +L + + S Sbjct: 63 MLVAFVFCVAVAS--EAYLEGLESASVLVRFVLCLLISFIFCMIS 105 >gi|1171830|sp|P43190|NU6M_AETPU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|394656|emb|CAA52131.1| NADH dehydrogenase subunit 6 [Aethia pusilla] Length = 173 Score = 38.1 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGLCFVLGGLAVASKPSPYYGVVGLVLASVAGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVA 84 ++V F++ + + A Sbjct: 62 GMLVVFVYSVSLAADPFPEA 81 >gi|14602237|ref|NP_148749.1| NADH dehydrogenase subunit 6 [Tarsius bancanus] gi|14582827|gb|AAK69669.1|AF348159_12 NADH dehydrogenase subunit 6 [Tarsius bancanus] Length = 170 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L S + ++ + +PIY LI + G+ L LG F+ ++ ++Y Sbjct: 1 MTYVVF-LLSVIFLMGFIGFSSKPSPIYGGLGLIVSGGIGCGMVLSLGGVFIGLMVFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + M + A + G +G+ +V + L Sbjct: 60 LGGMLVVFGYTTAMAMEEYPEAWGSSVSVW-GVLLLGMFMEVFVVAWMMYYDNVGLKSLE 118 Query: 123 RLVFKGNN 130 V G+N Sbjct: 119 DWVIFGDN 126 >gi|197311183|ref|YP_002154463.1| NADH dehydrogenase subunit 6 [Ptychochromoides katria] gi|197304609|dbj|BAG69535.1| NADH dehydrogenase subunit 6 [Ptychochromoides katria] Length = 173 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 ++F F ++ V + +P ++ L+ G+ + G F+++I ++Y+G + Sbjct: 4 LMFMFLFGLVLGLVAVASNPSPYFAALGLVAVAGMGCGVLVGHGGSFLSLILFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + + AEP + S +L + VC M + E S Sbjct: 64 LVVFAYSAAL------AAEPYPEGWGSWSVLGMVLVYVVGVCMVGGMFWGGWYEASWTSA 117 Query: 127 K 127 Sbjct: 118 D 118 >gi|256427221|ref|YP_003126990.1| NADH dehydrogenase subunit 6 [Rhynchopelates oxyrhynchus] gi|256353373|dbj|BAH97881.1| NADH dehydrogenase subunit 6 [Rhynchopelates oxyrhynchus] Length = 173 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L YL F I++ V + +P ++ L+ + G+ + G F++++ ++Y+G Sbjct: 2 TLLMYLSVFSWILALIAVASNPSPYFAALGLVVVAGSGCGVLIAHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V +F E L + IL+ + + + Sbjct: 62 GMLV--VFAYSAALAAEPYPETWGSEPVLVYAVVYILSVAGAAALVGGGWYESSWVPADE 119 Query: 125 VFKGN 129 + + + Sbjct: 120 LSEFS 124 >gi|294656013|ref|XP_458245.2| DEHA2C13090p [Debaryomyces hansenii CBS767] gi|199430790|emb|CAG86321.2| DEHA2C13090p [Debaryomyces hansenii] Length = 950 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 9/131 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGA------EFVAMITLVVYV 63 L S ++T +N ++ I + GL ++ ++ LV Y+ Sbjct: 17 LLSITTSSLGIAILTSQNMAIALLLFIIGGFISGGLLVIQMLFRSNLTPIFFILQLVAYI 76 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFMVF--SAEGE 120 ++ +F I ++ + ++ K + + FI + I F+VF S E Sbjct: 77 FQIVTGIVFCINIIHNHFDFSKGFKGWEVAVPTLFIIDVFLMAISITLLFVVFLQSGPDE 136 Query: 121 LSRLVFKGNNV 131 + + + + V Sbjct: 137 IEDVDLEKDTV 147 >gi|165932421|ref|YP_001650838.1| NADH dehydrogenase subunit 6 [Hippocampus kuda] gi|154758832|dbj|BAF74975.1| NADH dehydrogenase subunit 6 [Hippocampus kuda] Length = 173 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 1/115 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F L + I V + +P ++ L+ G+ + G F++++ ++Y Sbjct: 1 MTYLMFLLLMGL-IFGLIAVASNPSPYFAALGLVVVAGMGCGVMVSFGGPFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + + G + L + S Sbjct: 60 LGGMLVVFAYSAALAAEPYPESWGSWSVAIYGVLYFMGGVLVLSYLYGGWNESSW 114 >gi|298110801|gb|ADI57760.1| NADH dehydrogenase subunit 6 [Ovis vignei] gi|298110815|gb|ADI57773.1| NADH dehydrogenase subunit 6 [Ovis vignei] gi|298110843|gb|ADI57799.1| NADH dehydrogenase subunit 6 [Ovis vignei] Length = 175 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFVTGLLMEFLMV 104 >gi|224588034|ref|YP_002640563.1| NADH dehydrogenase subunit 6 [Rallina eurizonoides sepiaria] gi|224471579|dbj|BAH24073.1| NADH dehydrogenase subunit 6 [Rallina eurizonoides sepiaria] Length = 173 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 43/103 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ + V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFLGVCFVLGGLAVASNPSPYYGVVGLVLSSVVGCGWLLSLGLSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V FL+ + + + + +L + V Sbjct: 62 GMLVVFLYSVSLAADPYPEGWGDWRVVGYTVGLVLVLIVGMFV 104 >gi|195996941|ref|XP_002108339.1| hypothetical protein TRIADDRAFT_52711 [Trichoplax adhaerens] gi|190589115|gb|EDV29137.1| hypothetical protein TRIADDRAFT_52711 [Trichoplax adhaerens] Length = 1296 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 24/148 (16%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMIT-------LVV 61 ++ S + + S ++ S+ + + AG++ LL + + + + Sbjct: 121 FIASILLMSSFLMLALATRDSPSLLFPALSLCSTAGMYFLLSLFQIGNLFKTKRSTVISI 180 Query: 62 YVG---AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 G A FLF ++ D+ G S I A + N +VF Sbjct: 181 INGSFDASAAIFLFFQLIYDV-----------GISRSTLFLIWTALSFITVINTIVFIPA 229 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPL 146 + + N++ + G + Y Y Sbjct: 230 KPILPPDAEYNSITS-GIL--GNYYYIF 254 >gi|153127850|ref|YP_001382344.1| NADH dehydrogenase subunit 6 [Ailurus fulgens styani] gi|152962731|dbj|BAF73968.1| NADH dehydrogenase subunit 6 [Ailurus fulgens styani] Length = 175 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +IS + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMVYIVFILSVIFVISFVGFSSKPSPIYGGLVLIVSGAVGCGIILSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFILGLLSELLTAC 105 >gi|14141960|ref|NP_115401.1|ND6_15669 NADH dehydrogenase subunit 6 [Tinamus major] gi|14039506|gb|AAK53254.1|AF338707_13 NADH dehydrogenase subunit VI [Tinamus major] Length = 173 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 34/67 (50%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ + V + +P Y V L+ V G L LG FV+++ +VY+G ++V Sbjct: 7 FLGVCFVLGALAVASNPSPQYGVMGLVMGSVVGCGWLLSLGVSFVSLVLFLVYLGGMLVV 66 Query: 70 FLFIIMM 76 F++ + + Sbjct: 67 FVYCVSL 73 >gi|289183160|ref|YP_003457147.1| NADH dehydrogenase subunit 6 [Ophiocomina nigra] gi|288995517|emb|CBH40121.1| NADH dehydrogenase subunit 6 [Ophiocomina nigra] Length = 152 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 75/155 (48%), Gaps = 11/155 (7%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 ++ S ++ +P +SVF ++ ++ + +F L G F +++ +++Y G ++V FLF Sbjct: 1 MVVGSLILFFSLSPYFSVFGILVQALSLSIIFCLFGFPFFSLLLILIYAGGMLVVFLFST 60 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN- 133 ++ AE + G+ + +IV +V+S E ++ L F G N E Sbjct: 61 LLT------AERHPESIVQEIVLFGLGSMIVIVP----LVYSWETPVNSLSFVGLNQEML 110 Query: 134 IGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHR 168 +G + A + F+LL++++G + + H Sbjct: 111 LGNLFSVPLAIVTCVVAFVLLIALMGVLSINFEHT 145 >gi|237642066|ref|YP_002894728.1| NADH dehydrogenase subunit 6 [Moschus berezovskii] gi|153799701|gb|ABS50581.1| NADH dehydrogenase subunit 6 [Moschus berezovskii] Length = 175 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMVYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L ++V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKAVLGAFITGLLMEFVMV 104 >gi|222836590|ref|YP_002586853.1| NADH dehydrogenase subunit 6 [Cetomimus sp. AMS I34481001] gi|222051542|dbj|BAH15231.1| NADH dehydrogenase subunit 6 [Cetomimus sp. AMS I34481001] Length = 173 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 1/107 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + ++ V + +P ++ L+ GL + G F++++ ++Y+G Sbjct: 2 TYLMSFLLVGLVVGLIGVASNPSPFFAALGLVVVAGFGCGLLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCAS 110 ++V F + + + G +F+G++ A +C Sbjct: 62 GMLVVFAYSAALAAEPFPESWGSWSVFGQAFIYFMGVVLAFWYLCGG 108 >gi|215979761|ref|YP_002333256.1| NADH dehydrogenase subunit 6 [Torquigener brevipennis] gi|215422711|dbj|BAG85546.1| NADH dehydrogenase subunit 6 [Torquigener brevipennis] Length = 173 Score = 37.7 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G F++++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFIY 69 >gi|13898639|gb|AAK48840.1| NADH dehydrogenase subunit 6 [Amazona farinosa] Length = 172 Score = 37.7 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 44/99 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++++ LV + +P Y V L+F V G + LG FV+++ +VY+G Sbjct: 2 TYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103 ++V F++ + + F+ I++ Sbjct: 62 GMLVVFVYSVSLAADPFPQVWGGWHTMGCVLGFVFIVST 100 >gi|119360593|ref|YP_913378.1| NADH dehydrogenase subunit 6 [Tribolodon nakamurai] gi|119225063|dbj|BAF41439.1| NADH dehydrogenase subunit 6 [Tribolodon nakamurai] Length = 173 Score = 37.7 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 48/109 (44%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +LF + I+ V + P ++ L+ A G+ + G F++++ ++Y+G Sbjct: 2 TYFVFLFLLILIVGLIAVASNPTPYFAALGLVVAAGVGCGVLVSCGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + A R G++ + +G++ + + Sbjct: 62 GMLVVFAYSAALAAEPFPEAWGSRSVAGYVLVYLVGVILTAGLFWGGWY 110 >gi|56713977|gb|AAW23984.1| NADH dehydrogenase subunit 6 [Ovis aries] Length = 175 Score = 37.7 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSXIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFLMV 104 >gi|38707476|ref|NP_944774.1|ND6_17487 NADH dehydrogenase subunit 6 [Phocoena phocoena] gi|38602597|emb|CAD88051.1| NADH6 protein [Phocoena phocoena] Length = 175 Score = 37.7 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +IS V + +P+Y LI G+ G F+ ++ ++Y Sbjct: 1 MTMYIVFIMSVIFVISLVGVSSKPSPVYGGLGLIVGGAVGCGIVFSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M I+ + LG F +G++ L+V Sbjct: 61 LGGMLVVFGYTAAM-AIEQYPEVWVSNKVVLGGFLLGLITEFLVVL 105 >gi|15079201|ref|NP_149942.1| NADH dehydrogenase subunit 6 [Trichosurus vulpecula] gi|13752513|gb|AAK38700.1|AF357238_12 NADH dehydrogenase subunit 6 [Trichosurus vulpecula] Length = 167 Score = 37.7 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 46/115 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +PIY SL+ + + + + L F+ ++ +VY Sbjct: 1 MEMMVVFLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLENTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M + + F F + + V +A Sbjct: 61 LGGMLVVFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEVEVDTA 115 >gi|313676724|ref|YP_004054720.1| NADH/ubiquinone/plastoquinone (complex i) [Marivirga tractuosa DSM 4126] gi|312943422|gb|ADR22612.1| NADH/Ubiquinone/plastoquinone (complex I) [Marivirga tractuosa DSM 4126] Length = 762 Score = 37.7 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 43/101 (42%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + +I+ + R+ I ++ SL + + +FL GA +A+ +++ + VF Sbjct: 597 ILGLIVLIALGFTLFTRSNISALLSLSVVGIAISIIFLEAGAPDLAITFILIDALTITVF 656 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 L + + + + R + + G+L ++ + Sbjct: 657 VLILHKLPKKMLRKRNSARVRDAIIALGTGLLITLILFSIT 697 >gi|299829101|ref|YP_003735116.1| NADH dehydrogenase subunit 6 [Hydrolagus lemures] gi|298110913|gb|ADI57864.1| NADH dehydrogenase subunit 6 [Hydrolagus lemures] Length = 173 Score = 37.7 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRN-PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++F + M I + V P ++ F L+ + GL G F++++ ++Y+G Sbjct: 2 IYFVILMLMCFIMGLVAVASNPAPYFAAFGLVVSAAVGCGLLASHGVSFLSLVLFLIYLG 61 Query: 65 AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 ++V F++ + D E + + +G+ A L C M Sbjct: 62 GMLVVFVYSAALTADPHPESWWDWSVMANVSVYVLGVSVAALYFCGGWNM 111 >gi|238866860|ref|YP_002929320.1| NADH dehydrogenase subunit 6 [Otolemur crassicaudatus] gi|238809381|dbj|BAH69206.1| NADH dehydrogenase subunit 6 [Otolemur crassicaudatus] Length = 175 Score = 37.7 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL S + ++ + +PIY LI + G+ + LG F+ ++ +VY+G ++V Sbjct: 6 YLLSVLFVLGFVGFSSKPSPIYGGLGLIISGGVGCGIVMSLGGSFMGLMVFLVYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + M + + + +L LI+ + Sbjct: 66 VFGYTTAMATEEYPESWGSSVVIWGALLLGAVLEVILILFVGEY 109 >gi|94490706|ref|YP_588082.1|ND6_19394 NADH dehydrogenase subunit 6 [Cnemotriccus fuscatus] gi|48727630|gb|AAT46118.1| NADH dehydrogenase subunit 6 [Cnemotriccus fuscatus] Length = 173 Score = 37.7 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F S I+ V + +P Y V L+ V G + LG F++++ +VY+G Sbjct: 2 TYFMIFLSICFILGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVSFISLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + I +L + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVVGYSVALIMVLVGGMAAVGL 107 >gi|298110689|gb|ADI57656.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|298110703|gb|ADI57669.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|298110745|gb|ADI57708.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|298110759|gb|ADI57721.1| NADH dehydrogenase subunit 6 [Ovis aries] Length = 175 Score = 37.7 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFVTGLLMEFLMV 104 >gi|28603666|ref|NP_789759.1| NADH dehydrogenase subunit 6 [Coturnix chinensis] gi|28556861|dbj|BAC57512.1| NADH dehydrogenase subunit 6 [Coturnix chinensis] Length = 173 Score = 37.7 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ + V + +P Y V L+ A V G + LG F++++ ++Y+G Sbjct: 2 TYFVIFLGVCFMLGTLAVASNPSPYYGVVGLVLASVVGCGWLVNLGVSFISLVLFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR 86 >gi|298110717|gb|ADI57682.1| NADH dehydrogenase subunit 6 [Ovis aries] gi|298110731|gb|ADI57695.1| NADH dehydrogenase subunit 6 [Ovis aries] Length = 175 Score = 37.7 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFVTGLLMEFLMV 104 >gi|226453512|ref|YP_002791157.1| NADH dehydrogenase subunit 6 [Chamaeleo calyptratus] gi|124055090|gb|ABM89706.1| NADH dehydrogenase subunit 6 [Chamaeleo calyptratus] Length = 169 Score = 37.7 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 40/93 (43%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P + SL A V AG+ L + F++++ ++VY+G ++V F++ + M Sbjct: 14 VGVASNPSPYFGGVSLALASVFGAGVMAGLSSTFISLVLMLVYLGGMLVVFVYSVAMSSD 73 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 A + F+G L + Sbjct: 74 MYPEAWGNRSVFLYVVGFLGYLFCLWWYTGGEW 106 >gi|215979551|ref|YP_002333061.1| NADH dehydrogenase subunit 6 [Takifugu poecilonotus] gi|215422739|dbj|BAG85572.1| NADH dehydrogenase subunit 6 [Takifugu poecilonotus] Length = 173 Score = 37.7 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G F++++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60 Query: 64 GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 G ++V F++ + A + F GIL +++ + S + Sbjct: 61 GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEKVWWGVSGKM 120 Query: 120 ELSRL 124 + + + Sbjct: 121 DWNAV 125 >gi|190349452|ref|YP_001974525.1| NADH dehydrogenase subunit 6 [Sphoeroides pachygaster] gi|89885716|dbj|BAE86993.1| NADH dehydrogenase subunit 6 [Sphoeroides pachygaster] Length = 173 Score = 37.7 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 37/98 (37%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P + SL+ G G F++++ ++Y+G ++V F + + + Sbjct: 17 VAVASNPSPYFGALSLVVVAGFGCGTLFWHGGSFLSLVLFLIYLGGMLVVFAYSVALAAE 76 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 L + GI+A I+ + S Sbjct: 77 PYPETLGSGPVVMLMLMYFGIVALVYILFIGGWEGQSW 114 >gi|62900841|gb|AAY18748.1| NADH dehydrogenase subunit 6 [Podarcis muralis] Length = 157 Score = 37.7 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 S V + +P + +L+ G+ +LLG+ FV+++ L++Y+G ++V F + + L Sbjct: 1 SLIGVASNPSPYFGAGNLVVGASLGCGILILLGSSFVSLVLLLIYLGGMLVVFAYSV-AL 59 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 D K G+ G + + +L ++ F+ G Sbjct: 60 ASDPFPETWGKVGGYFGGYVVLVLFLIMMFSEGVFVSLGVSG 101 >gi|126792902|gb|ABO27307.1| NADH dehydrogenase subunit 6 [Nandayus nenday] Length = 170 Score = 37.7 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G + Sbjct: 4 FLVFLGISFVLASLLVASNPSPYYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|325126943|ref|YP_004286178.1| NADH dehydrogenase subunit 6 [Geotrygon violacea] gi|304365571|gb|ADM26376.1| NADH dehydrogenase subunit 6 [Geotrygon violacea] Length = 173 Score = 37.7 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 42/84 (50%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P Y V L+ A V G L LG FVA++ +VY+G ++V F++ + + Sbjct: 21 SNPSPYYGVVGLVAASVTGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVSLAADPFPE 80 Query: 84 AEPRKKRGFLGSFFIGILAAELIV 107 A + G F+ +LA ++V Sbjct: 81 AWGDWRVVGYGLGFVLVLAIGVVV 104 >gi|68989240|ref|YP_254711.1| NADH dehydrogenase subunit 6 [Cervus nippon yakushimae] gi|67625647|dbj|BAD99598.1| NADH dehydrogenase subunit6 [Cervus nippon yakushimae] Length = 175 Score = 37.7 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEVTMV 104 >gi|68989159|ref|YP_254648.1| NADH dehydrogenase subunit 6 [Pterodroma brevirostris] gi|37724212|gb|AAO20295.1| NADH dehydrogenase subunit 6 [Pterodroma brevirostris] Length = 173 Score = 37.7 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ V G L LG FV+++ +VY+G Sbjct: 2 AYFVLFLGLCFVLGGLAVASNPSPYYGVVGLVMGSVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|317097184|ref|YP_004123322.1| NADH dehydrogenase subunit 6 [Rattus villosissimus] gi|290573424|gb|ADD46542.1| NADH dehydrogenase subunit 6 [Rattus villosissimus] Length = 172 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ SF+ ++ + +PIY F LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSFLFLVGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ FF+ L EL++ Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLLMELVM 102 >gi|207560034|gb|ACI24625.1| NADH dehydrogenase subunit 6 [Rupicapra rupicapra] Length = 175 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +I + PIY LI + G+ L G F+ ++ + Y Sbjct: 1 MMTYIVFILSIIFVIGFVGFSSKPXPIYGGLGLIVSGGVGCGIXLNFGGSFLGLMVFLXY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFITGLLMEFLMV 104 >gi|18077908|ref|NP_542254.1| NADH dehydrogenase subunit 6 [Vombatus ursinus] gi|17932911|emb|CAC83116.1| NADH dehydrogenase subunit 6 [Vombatus ursinus] Length = 167 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 46/115 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +L S + I+ + +P+Y SL+ + + + L F+ ++ +VY Sbjct: 1 MKMMVIFLLSLLLIVGFVAFASKPSPVYGGLSLVASGGLGCAIVVSLENTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M + + F F ++ + + +A Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNAVAFGMLLFTLLVELIWYFVSGEVEIVTA 115 >gi|296099708|gb|ADG95307.1| NADH dehydrogenase subunit 6 [Polypterus retropinnis] Length = 167 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 49/111 (44%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS + +IS V + +P ++ F L+ G+ + G F++M+ ++Y+G Sbjct: 2 VLMVVFSVIFLISLVAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMVLFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 ++V F + + A + ++ ++A ++ +F F Sbjct: 62 MLVVFAYSAALAAEPYPHAWGSWEVFSYVLGYMFLIAVAWVMFVGDFGSFG 112 >gi|219524187|ref|YP_002456332.1| NADH dehydrogenase subunit 6 [Sacalia quadriocellata] gi|117649858|gb|ABK53946.1| NADH dehydrogenase subunit 6 [Sacalia quadriocellata] Length = 175 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 47/97 (48%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G F++++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFISLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103 +V F + ++ V + F G ++ IL Sbjct: 64 LVIFAYSSALMAEPFPVGWVSLEGVFYGLYYFFILMV 100 >gi|58578662|ref|YP_203288.1| NADH dehydrogenase subunit 6 [Herpestes javanicus] gi|57014066|gb|AAW32555.1| NADH dehydrogenase subunit 6 [Herpestes javanicus] Length = 175 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+M +F + S + ++S + +PIY FSLI A G+ L G F+ ++ + Sbjct: 1 MMMYIVF--ILSTIFVVSFVSFSSKPSPIYGGFSLIVAGGVGCGIVLSFGGSFLGLMVFL 58 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +Y+G ++V F + + + + LG+ G+LA L+ C Sbjct: 59 IYLGGMLVVFGYT-TAMAAEPYPETWSSNKAVLGALITGVLAELLMAC 105 >gi|197311140|ref|YP_002154502.1| NADH dehydrogenase subunit 6 [Xenopoecilus sarasinorum] gi|197304244|dbj|BAG69205.1| NADH dehydrogenase subunit 6 [Xenopoecilus sarasinorum] Length = 173 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 9/154 (5%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YLF ++ V + +P ++ L+ G+ + G F+++I ++Y+G ++V Sbjct: 6 YLFLIGLVLGLAAVASNPSPYFAALGLVLVAGMGCGVLVGHGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSR 123 F + + L F++ I+ +++V E S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSLLMLFYLFIVGLVGSYLCEGWFEGSWVVVDEFHEFSL 125 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSM 157 G + ++Y+ + L ++G++LLLS+ Sbjct: 126 FRGDGGGIA----LIYSSGGFVLILAGWVLLLSL 155 >gi|32526840|ref|NP_871772.1| NADH dehydrogenase subunit 6 [Urotrichus talpoides] gi|62510793|sp|Q7Y8D2|NU6M_UROTA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|32469191|dbj|BAC78885.1| NADH dehydrogenase subunit 6 [Urotrichus talpoides] Length = 175 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIAFILSTILVVSFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNYGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V +F E E + S F+ AEL+ Sbjct: 61 LGGMLV--VFGYTTAMAMEEYPEVWVSNKTVLSLFVLGFMAELLFAG 105 >gi|288903391|ref|YP_003434114.1| NADH dehydrogenase subunit 6 [Epinephelus septemfasciatus] gi|219562633|gb|ACL27781.1| NADH dehydrogenase subunit 6 [Epinephelus septemfasciatus] Length = 173 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 6 LFFYLFSFMA--IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F + F+ I+ + V + +P + L+ G+ + G+ F+A+I ++Y+ Sbjct: 1 MCFVIICFLICWIVGAIAVASNPSPFFGALGLVMVAGVGCGVLVEYGSPFLALILFLIYL 60 Query: 64 GAVIVFFLF 72 G ++V F + Sbjct: 61 GGMLVVFAY 69 >gi|16357316|ref|NP_443565.1| NADH dehydrogenase subunit 6 [Danacetichthys galathenus] gi|16267117|dbj|BAB70259.1| NADH dehydrogenase subunit 6 [Danacetichthys galathenus] Length = 173 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 8/120 (6%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 F LF F ++ V + +P Y+ L+ L + G F++++ ++Y+G ++ Sbjct: 7 FLLFGF--VVGLIAVASNPSPFYAALGLVVVAGLGCALLVGHGGPFLSLVLFLIYLGGML 64 Query: 68 VFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 V F + + AEP + S L L V + F + E S + Sbjct: 65 VVFAYSAAL------AAEPFPESWGNWSVLGQALVYFLGVALAFFHFYGGWSEASWVPVD 118 >gi|226464022|ref|YP_002734975.1| NADH dehydrogenase subunit 6 [Chamaeleo calcaricarens] gi|124055132|gb|ABM89745.1| NADH dehydrogenase subunit 6 [Chamaeleo calcaricarens] Length = 169 Score = 37.7 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 V + +P + SL A V AG+ L + FV+++ ++VY+G ++V F++ + M Sbjct: 15 GVASNPSPYFGGVSLALASVLGAGVMAGLSSTFVSLVLMLVYLGGMLVVFVYSVAMSSDM 74 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIG--KVL 138 A + F+G L + F GE+ +V + V ++G +L Sbjct: 75 YPEAWGNRSVFLYVVGFLGYLFCLWWYMGGKW--FFDGGEVGSVVLLNDAVVDLGGVVLL 132 Query: 139 YT 140 Y+ Sbjct: 133 YS 134 >gi|109676684|gb|ABG37771.1| NADH dehydrogenase subunit 6 [Pelecanus conspicillatus] Length = 173 Score = 37.7 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 40/80 (50%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ S V + +P Y V L+ A V G + LG FV+++ +VY+G Sbjct: 2 TYFVLLLGVCFVLGSLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVA 84 ++V F++ + + VA Sbjct: 62 GMLVVFVYSVSLAADPFPVA 81 >gi|114052896|ref|YP_740291.1| NADH dehydrogenase subunit 6 [Lacerta viridis viridis] gi|113926828|emb|CAJ45057.1| NADH dehydrogenase subunit 6 [Lacerta viridis viridis] Length = 171 Score = 37.7 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 43/97 (44%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F +IS + +P + SL+ A G+ +LLG FV+++ L++Y+G ++V Sbjct: 7 FFMVCFVISLIGIACNPSPYFGAGSLVVAAGLGCGILILLGGSFVSLVLLLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 F + + + +G F+ + ++ Sbjct: 67 FAYSVALASDPFPETLGNLGGYLIGYTFLVVFLVVML 103 >gi|316926517|ref|YP_004111307.1| NADH dehydrogenase subunit 6 [Capra hircus] gi|283049415|gb|ADB07181.1| NADH dehydrogenase subunit 6 [Capra hircus] Length = 175 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGAGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFVTGLLMEFLMV 104 >gi|157736171|ref|YP_001491420.1| NADH dehydrogenase subunit 6 [Diodon holocanthus] gi|139000792|dbj|BAF51944.1| NADH dehydrogenase subunit 6 [Diodon holocanthus] Length = 173 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 42/105 (40%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F ++ V + +P ++ L+ G+ + G F+++I ++Y+G ++V F + Sbjct: 10 FGLVLGLVAVASNPSPYFAALGLVLVAGLGCGVLVSHGGSFLSLILFLIYLGGMLVVFAY 69 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + + F G ++G + V + S Sbjct: 70 SAALAAEPFPESLGSRSVAFSGVVYMGAVFMISSVFWGGWYESSW 114 >gi|240266352|ref|YP_002970605.1| NADH dehydrogenase subunit 6 [Thermophis zhaoermii] gi|238800141|gb|ACR55932.1| NADH dehydrogenase subunit 6 [Thermophis zhaoermii] Length = 171 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 46/120 (38%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+M + F + + S + P V +L+ ++LG F A++ + Sbjct: 1 MIMMNYLFGVIMVFVVFSVVALGITSVPYRGVVALMGVSFFCCVFMVVLGRTFAALVMYI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 VY+G +IV F + + + + + + + S F+ I ++ + + Sbjct: 61 VYLGGLIVVFGYCVSVEKDGGGLFKTDGFKYLIISMFVVIGFLSWVLVGEVGGLLTYTSW 120 >gi|156142542|gb|ABU52036.1| NADH dehydrogenase subunit 6 [Coereba flaveola] Length = 155 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 44/95 (46%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A V G + LG F++++ ++VY+G ++V F++ + + Sbjct: 2 VASNPSPYYGVLGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVVFVYSVSLAAEPY 61 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 A G ++A L++ + + S Sbjct: 62 PEAWGNFGVVGYGFGMGLVVAVGLVMSGTTGALVS 96 >gi|115532038|ref|YP_783968.1| NADH dehydrogenase subunit 6 [Lagostrophus fasciatus] gi|115345135|emb|CAK22241.1| NADH dehydrogenase subunit 6 [Lagostrophus fasciatus] Length = 167 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 45/112 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +P+Y SL+ + + + L F+ +I +VY Sbjct: 1 MKMMVIFLFSVLLIFGFVAFASKPSPVYGGLSLVASGGLGCAIVVSLEDVFLGLIVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +G ++V F + M + + F ++ + + + V Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNTVALSMLLFTLLIESVWYLLSGQVKV 112 >gi|215979733|ref|YP_002333230.1| NADH dehydrogenase subunit 6 [Takifugu oblongus] gi|215422683|dbj|BAG85520.1| NADH dehydrogenase subunit 6 [Takifugu oblongus] Length = 173 Score = 37.7 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G F++++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60 Query: 64 GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 G ++V F++ + A + F GIL +++ + S E Sbjct: 61 GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEEIWWGVSGEM 120 Query: 120 ELSRL 124 + + Sbjct: 121 DWDAV 125 >gi|327492973|ref|YP_004347925.1| NADH dehydrogenase subunit 6 [Torquigener pleurogramma] gi|327392474|dbj|BAK09910.1| NADH dehydrogenase subunit 6 [Torquigener pleurogramma] Length = 173 Score = 37.7 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G F++++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALFCCGASVLHGGTFLSLVLLMIYM 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFIY 69 >gi|161561821|ref|YP_001586160.1| NADH dehydrogenase subunit 6 [Porphyrio hochstetteri] gi|143024786|gb|ABO93108.1| NADH dehydrogenase subunit 6 [Porphyrio hochstetteri] Length = 173 Score = 37.7 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 41/101 (40%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F ++ V + +P Y V L+ V G L LG FV+++ +VY+G + Sbjct: 4 FMLFLGVCFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLLSLGLSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +V FL+ + + + + + +L L V Sbjct: 64 LVVFLYSVSLAADPYPEGWGDWRVVGYIAGLVLVLIVGLFV 104 >gi|327555507|gb|AEB01120.1| NADH dehydrogenase subunit 6 [Crocodylus rhombifer] Length = 175 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 43/99 (43%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L + ++S LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G Sbjct: 3 ITFFLLCCLMMVSVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104 ++V F F + D L L Sbjct: 63 LLVVFAFCVGFTDDKYCEFWGAGGSKVLACVCGAGLGVG 101 >gi|221145503|ref|YP_002519714.1| NADH dehydrogenase subunit 6 [Brachaluteres ulvarum] gi|219806639|dbj|BAH10341.1| NADH dehydrogenase subunit 6 [Brachaluteres ulvarum] Length = 173 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 43/110 (39%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P ++ L+ G+ G F++++ ++Y+G ++V Sbjct: 7 LFLLGLVMGLLAVASNPSPYFAALGLVTVSGLGCGVLFGHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 F + + + + +++G++ + + FS Sbjct: 67 FAYCSALAAEPHPESWGSEPVMLTVVWYVGMVFLVSSLFWGGWYEFSWTA 116 >gi|238866874|ref|YP_002929346.1| NADH dehydrogenase subunit 6 [Perodicticus potto] gi|238809409|dbj|BAH69232.1| NADH dehydrogenase subunit 6 [Perodicticus potto] Length = 175 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 43/108 (39%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 + S + ++ + +PIY L+ + G+ + G F+ ++ +VY+G ++V Sbjct: 6 FTLSVLFVLGFIGFSSKPSPIYGGLGLVMSGGVGCGIVMSFGGSFMGLVVFLVYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 F + M + + + ++ L++ + V S Sbjct: 66 VFGYTTAMATEEYPESWGSSVVMWGALLLGVLVEMMLVLLGGGYYVGS 113 >gi|226462727|ref|YP_002727908.1| NADH dehydrogenase subunit 6 [Chamaeleo africanus] gi|124055146|gb|ABM89758.1| NADH dehydrogenase subunit 6 [Chamaeleo africanus] gi|124055160|gb|ABM89771.1| NADH dehydrogenase subunit 6 [Chamaeleo africanus] Length = 169 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P + SL A V AG+ + L + FV+++ ++VY+G ++V F++ + M Sbjct: 14 VGVASNPSPYFGGVSLALASVFGAGVMVGLSSTFVSLVLMLVYLGGMLVVFIYSVAMSSD 73 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 A + F+G L + Sbjct: 74 MYPEAWGNRSVFLYVIGFLGYLFCLWWYIGEKW 106 >gi|212725651|ref|YP_002317392.1| NADH dehydrogenase subunit 6 [Spinachia spinachia] gi|212374535|dbj|BAG83103.1| NADH dehydrogenase subunit 6 [Spinachia spinachia] Length = 173 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 1/105 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F + ++ + +P + L+ G+ + GA F++++ ++Y+G ++V Sbjct: 7 IFMLGLVFGLIVIASNPSPYFGALGLVVVSGMGCGVLVGHGAPFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNFM 113 F + + + F G + G+L A F+ Sbjct: 67 FAYSAALAAEPYPEMLGSRSVAFNAGGYLFGVLIAGSFFWGGWFI 111 >gi|19032399|gb|AAL83417.1| NADH dehydrogenase subunit 6 [Trichosurus caninus] gi|19032402|gb|AAL83419.1| NADH dehydrogenase subunit 6 [Trichosurus caninus] Length = 167 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 47/115 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +PIY SL+ + + + + LG F+ ++ +VY Sbjct: 1 MKMMVVFLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLGNTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M + + F F + + V +A Sbjct: 61 LGGMLVVFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEVEVDTA 115 >gi|308178332|ref|YP_003917738.1| Na(+)/H(+) antiporter subunit A/B [Arthrobacter arilaitensis Re117] gi|307745795|emb|CBT76767.1| Na(+)/H(+) antiporter subunit A/B [Arthrobacter arilaitensis Re117] Length = 989 Score = 37.7 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L + I + + +T +V + +F L GA +A+ L+V IV Sbjct: 611 LIGAVIIAGAVVAITAPKRFMAVLMVSVTGYGMVAIFALQGAPDLALTQLLV---ETIVL 667 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 F++ + + + + + + LA ++ A M E +S Sbjct: 668 VSFVLALRALPKRLWVGLTRIKWGRAILAIALAVMVVYIAIAMMAARTEARIS 720 >gi|29570639|ref|NP_818798.1| NADH dehydrogenase subunit 6 [Apteronotus albifrons] gi|29501148|dbj|BAC67505.1| NADH dehydrogenase subunit 6 [Apteronotus albifrons] Length = 173 Score = 37.7 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LF ++ V + P +S L+ A G+ + G F++++ ++Y+G ++V Sbjct: 6 FLFLMGLVMGLVGVASNPAPYFSALGLVVAAGGGCGVLVWHGGSFLSLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F + + AEP + S +L + V + + E S +V Sbjct: 66 VFAYSAAL------AAEPYPESWGDRSVVGYVLLYVVGVVLVGWWFYGGWYEGSWVVGDS 119 >gi|310007461|gb|ADP00772.1| NADH dehydrogenase subunit 6 [Morone mississippiensis] Length = 172 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 4/157 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ F+L F ++S V +P Y F L+ + + G F+A+I ++ Sbjct: 1 MMTYVACFFLAGF--VLSMVAVACNPSPFYGSFGLVAVAGFGCAVVIGFGGVFMALILVM 58 Query: 61 VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE- 118 +YVGA++V F++ + D E G G +F+G++AA + + Sbjct: 59 IYVGAMLVVFVYSAALAADRYPESWGSGSVAGQAGGYFLGLMAAFSFIWKEECGILGGPL 118 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155 G + + ++ + + + A + +G +LL Sbjct: 119 GSVEEWASQRGDISGVSWMYSSGGALLVISAGALLLT 155 >gi|147744502|ref|YP_001218802.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|145208220|gb|ABP38009.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|145208235|gb|ABP38023.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|145208249|gb|ABP38036.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532469|gb|ACU81398.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532483|gb|ACU81411.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532497|gb|ACU81424.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532511|gb|ACU81437.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532525|gb|ACU81450.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532539|gb|ACU81463.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532553|gb|ACU81476.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532567|gb|ACU81489.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532581|gb|ACU81502.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532595|gb|ACU81515.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532609|gb|ACU81528.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532623|gb|ACU81541.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532637|gb|ACU81554.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532651|gb|ACU81567.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532665|gb|ACU81580.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532679|gb|ACU81593.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532693|gb|ACU81606.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532707|gb|ACU81619.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532721|gb|ACU81632.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532735|gb|ACU81645.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532749|gb|ACU81658.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532763|gb|ACU81671.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532777|gb|ACU81684.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532791|gb|ACU81697.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532805|gb|ACU81710.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532819|gb|ACU81723.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532833|gb|ACU81736.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532847|gb|ACU81749.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532861|gb|ACU81762.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532875|gb|ACU81775.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532889|gb|ACU81788.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532903|gb|ACU81801.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532917|gb|ACU81814.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532931|gb|ACU81827.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532945|gb|ACU81840.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532959|gb|ACU81853.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532973|gb|ACU81866.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256532987|gb|ACU81879.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533001|gb|ACU81892.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533015|gb|ACU81905.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533029|gb|ACU81918.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533043|gb|ACU81931.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533057|gb|ACU81944.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533071|gb|ACU81957.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533085|gb|ACU81970.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533099|gb|ACU81983.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533113|gb|ACU81996.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533127|gb|ACU82009.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533141|gb|ACU82022.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533155|gb|ACU82035.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533169|gb|ACU82048.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533183|gb|ACU82061.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533197|gb|ACU82074.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533211|gb|ACU82087.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533225|gb|ACU82100.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533239|gb|ACU82113.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533253|gb|ACU82126.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533267|gb|ACU82139.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533281|gb|ACU82152.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533295|gb|ACU82165.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533309|gb|ACU82178.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533323|gb|ACU82191.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533337|gb|ACU82204.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533351|gb|ACU82217.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533365|gb|ACU82230.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533379|gb|ACU82243.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533393|gb|ACU82256.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533407|gb|ACU82269.1| NADH dehydrogenase subunit 6 [Bos grunniens] gi|256533421|gb|ACU82282.1| NADH dehydrogenase subunit 6 [Bos grunniens] Length = 175 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFITGLLMEFFMV 104 >gi|25057511|ref|NP_739683.1| NADH dehydrogenase subunit 6 [Diplacanthopoma brachysoma] gi|25005563|dbj|BAC23227.1| NADH dehydrogenase subunit 6 [Diplacanthopoma brachysoma] Length = 173 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TYIMSLFLMGLVLGLVGVASNPSPYFAALGLVVVAGMGCGVLVGFGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGF-LGSFFIGILAAELIVCASNF 112 ++V F + + + + F +G + +G+L + Sbjct: 62 GMLVVFAYSAALAAEPYPESWGSRPVMFYVGVYLLGVLLVSGPFWGGWY 110 >gi|37910033|gb|AAR04864.1| NADH dehydrogenase subunit 6 [Paratomella rubra] Length = 110 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 46/102 (45%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F + SF+V+ +P SV ++ V + + + + + +VVY+G +++ F F Sbjct: 5 FCCCLFSFMVIFSLSPYGSVLGIMLLSVMLSVQYFMSSNYLLGFLWVVVYIGGIVIVFAF 64 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 L I+ V + + FF+ ++ + I+ NF Sbjct: 65 SCSFLMINFVVKLLGSFKKMMFLFFLSMVLSCFILYFINFFW 106 >gi|299758243|dbj|BAJ09909.1| NADH dehydrogenase subunit 6 [Stolephorus chinensis] Length = 173 Score = 37.3 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 9 YLFS---FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 YLFS F+ I+ V + P Y+ L+ + GA F+A++ ++Y+G Sbjct: 3 YLFSSWLFLLILGLVAVASNPAPYYAALGLVLVAGAGCAILAGCGASFLAIVLFLIYLGG 62 Query: 66 VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F + + + E ++ + + A V + F + Sbjct: 63 MLVVFAYSAALAAEPHPEAWWDVSVLEYVAFYLTCVAVAGGYVYSGWFGHY 113 >gi|157736059|ref|YP_001491524.1| NADH dehydrogenase subunit 6 [Zebrasoma flavescens] gi|157679384|dbj|BAF80439.1| NADH dehydrogenase subunit 6 [Zebrasoma flavescens] Length = 173 Score = 37.3 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 43/113 (38%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF I+ V + +P ++ L+ G+ G F++++ ++Y+G Sbjct: 2 TFSMSLFLCGLILGLVAVASNPSPYFAALGLVTVAGLGCGVLAGHGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F++ + + + + ++ + +C + S Sbjct: 62 GMLVVFVYSVALAAEPFPESWGSQPVAMSAMVYVLWVMLAAGLCWGGWYGPSW 114 >gi|299758257|dbj|BAJ09919.1| NADH dehydrogenase subunit 6 [Stolephorus waitei] Length = 173 Score = 37.3 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 9 YLFS---FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 YLFS F+ I+ V + P Y+ L+ + GA F+A++ ++Y+G Sbjct: 3 YLFSSWLFLLILGLVAVASNPAPYYAALGLVLVAGAGCAILAGCGASFLAIVLFLIYLGG 62 Query: 66 VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F + + + E ++ + + A V + F + Sbjct: 63 MLVVFAYSAALAAEPHPEAWWDVSVLEYVAFYLTCVAVAGGYVYSGWFGHY 113 >gi|222839266|ref|YP_002586999.1| NADH dehydrogenase subunit 6 [Cuora flavomarginata] gi|188503898|gb|ACD56043.1| NADH dehydrogenase subunit 6 [Cuora flavomarginata] Length = 174 Score = 37.3 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVGMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + ++ V + F G ++ L ++ ++S EG + V Sbjct: 64 LVIFAYSSALMAEPFPVGWVSLEGVFYGLYY---LFIAVVFVQMGCHLWSIEGIGADTVD 120 Query: 127 KGN 129 G Sbjct: 121 AGG 123 >gi|108793278|ref|YP_637047.1| NADH dehydrogenase subunit 6 [Petaurus breviceps] gi|94481199|dbj|BAE94004.1| NADH dehydrogenase subunit 6 [Petaurus breviceps] Length = 164 Score = 37.3 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 50/115 (43%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + II + +PIY SL+ + G+ + F+ ++ +VY Sbjct: 1 MKMMIIFLFSILLIIGFVAFASKPSPIYGGLSLVMSGGLGCGMVVSFEDIFLGLVVFMVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M + + F F ++ + + + V++A Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNMVAFSMLLFAMLIEMFWFMISGDVEVYTA 115 >gi|325965048|ref|YP_004242954.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, Mnhsubunit alpha [Arthrobacter phenanthrenivorans Sphe3] gi|323471135|gb|ADX74820.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 1022 Score = 37.3 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +I + V +V + A +F L GA +A+ ++V I+ Sbjct: 618 VVGAGIVIGALAAVKANKRFLAVLMVSVTGYGIALMFALQGAPDLALTQMLV---ETIIL 674 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F++ M + E+ + + + IG+ +V A+ + Sbjct: 675 VAFVLAMRSLPAELRDRTGGKYRVVRVIIGLCFGITMVVAAIY 717 >gi|49616786|ref|YP_044763.1| NADH dehydrogenase subunit 6 [Rena humilis] gi|49256942|dbj|BAD24748.1| NADH dehydrogenase subunit 6 [Rena humilis] Length = 169 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 1/108 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + ++ + + P V L+F FV + + ++G FVA++ +VYVG Sbjct: 2 TYLMFIVCLLVFYGFLGLCLCVYPEDGVVWLVFCFVLGSFMLGVIGVSFVALMLFIVYVG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + + ++ V R R + F + Sbjct: 62 GMMVVFAYSV-AVTSEVGVKVGRWVRKVVSFCFGVVAFCFGFYVVGGL 108 >gi|327492529|ref|YP_004347429.1| NADH dehydrogenase subunit 6 [Torquigener hypselogeneion] gi|327392488|dbj|BAK09923.1| NADH dehydrogenase subunit 6 [Torquigener hypselogeneion] Length = 173 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 4/125 (3%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G F++++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 G ++V F++ L D + P + L F ++ + G Sbjct: 61 GGMLVVFIYS-SALSADKDPEAPTGWQVILFFFGYFFFVFGILYTNTVLDEELWWGVSGE 119 Query: 124 LVFKG 128 L + Sbjct: 120 LDWDA 124 >gi|126792890|gb|ABO27300.1| NADH dehydrogenase subunit 6 [Primolius auricollis] Length = 170 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G Sbjct: 2 TYFLVFLGVGFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|223976104|ref|YP_002600801.1| NADH dehydrogenase subunit 6 [Capricornis crispus] gi|207559950|gb|ACI24547.1| NADH dehydrogenase subunit 6 [Capricornis crispus] gi|207559964|gb|ACI24560.1| NADH dehydrogenase subunit 6 [Capricornis sumatraensis] gi|223972385|dbj|BAH23417.1| NADH dehydrogenase subunit 6 [Capricornis crispus] Length = 175 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFITGLLMEFFMV 104 >gi|260786443|ref|XP_002588267.1| hypothetical protein BRAFLDRAFT_86715 [Branchiostoma floridae] gi|229273427|gb|EEN44278.1| hypothetical protein BRAFLDRAFT_86715 [Branchiostoma floridae] Length = 963 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 17/115 (14%) Query: 7 FFYLFSFMA---IISSFLVVTVRNP----------IYSVFSLIFAFVNAAGLFLLLGAEF 53 F++ + +A I++ + +T P + + S++ + V + + GA Sbjct: 729 LFHIATTVAPCVILAVLMTITFVMPIDKGDRISFGVTILLSMVVSLVFVTDVLPVKGALP 788 Query: 54 VAMITLVVYVGAVIVFFLFI---IMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 +VVY+ A++ FLF I+ L P K FL +L +L Sbjct: 789 FFASLIVVYM-AMMGLFLFFTIYIITLHDKEGGLSPMAKTFFLRYMAGFLLLGDL 842 >gi|284177739|ref|YP_003406740.1| NADH dehydrogenase subunit 6 [Moschus moschiferus] gi|213990241|gb|ACJ60543.1| NADH dehydrogenase subunit 6 [Moschus moschiferus] Length = 175 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMVYIVFILSVVFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L ++V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFITGLLMEFVMV 104 >gi|226453434|ref|YP_002791027.1| NADH dehydrogenase subunit 6 [Rattus rattus] gi|160688830|gb|ABX45244.1| NADH dehydrogenase subunit 6 [Rattus rattus] gi|209361446|gb|ACI43359.1| NADH dehydrogenase subunit 6 [Rattus rattus] Length = 172 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY F LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E E F+ FF+ L EL++ Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFGFFVLGLFMELVM 102 >gi|298200334|ref|YP_003667919.1| NADH dehydrogenase subunit 6 [Acanthosaura armata] gi|296840995|dbj|BAJ08241.1| NADH dehydrogenase subunit 6 [Acanthosaura armata] Length = 174 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 38/68 (55%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L S S VV+ +P ++V +L+ + + G+ LG F+A++ +VY+G ++V Sbjct: 5 FLLSVGFFASVVGVVSNPSPCFAVGALVLSVGLSCGVLAELGMYFLALVVFLVYLGGMLV 64 Query: 69 FFLFIIMM 76 F + + M Sbjct: 65 VFAYTVAM 72 >gi|226968597|ref|YP_002808548.1| NADH dehydrogenase subunit 6 [Chiloscyllium plagiosum] gi|226247229|gb|ACO40344.1| NADH dehydrogenase subunit 6 [Chiloscyllium plagiosum] Length = 174 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 5/110 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++F + +I + V +P Y+ L+ A GL + G F++++ ++Y+G Sbjct: 2 IYFMSVMMIGLILGLMAVASNPSPYYAALGLVMAAGMGCGLMVGYGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 ++V F++ + P + ++GI +I F V Sbjct: 62 GMLVVFVYTAAL----AAEPYPEAWGDWSVLLYVGIYLMSVIFVGKYFAV 107 >gi|256427302|ref|YP_003127065.1| Nad6p [Dekkera bruxellensis] gi|255761599|gb|ACU32835.1| Nad6p [Dekkera bruxellensis] Length = 170 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 1/111 (0%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLG 94 LI + ++ A++ V+YVGAV++ F+FI+ +L+ E + Sbjct: 30 LIGTIIPVITELWFNYSQLFAILYTVIYVGAVVILFIFILSVLNKKEEYEYQYSSLFIIL 89 Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRL-VFKGNNVENIGKVLYTQYAY 144 N + + L + +++ IG +L+T+Y++ Sbjct: 90 LLLFLDDLDYNDSNDINLNSINIFDNFNILDIINNSDLSTIGNLLFTEYSF 140 >gi|215979705|ref|YP_002333204.1| NADH dehydrogenase subunit 6 [Takifugu xanthopterus] gi|215422655|dbj|BAG85494.1| NADH dehydrogenase subunit 6 [Takifugu xanthopterus] Length = 173 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G F++++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60 Query: 64 GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 G ++V F++ + A + F GIL +++ + S E Sbjct: 61 GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEEVWWGVSGEV 120 Query: 120 ELSRL 124 + + Sbjct: 121 DWDAV 125 >gi|197311225|ref|YP_002154515.1| NADH dehydrogenase subunit 6 [Hyporhamphus sajori] gi|197304258|dbj|BAG69218.1| NADH dehydrogenase subunit 6 [Hyporhamphus sajori] Length = 173 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + Y F F I+ V + +P ++ L+ G+ + G F+++I ++Y+G Sbjct: 2 TYIIYFFFFGLILGLAAVASNPSPYFAALGLVVVAGMGCGVLVSCGGSFLSLILFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNF 112 ++V F + + G + +G+ A ++ + Sbjct: 62 GMLVVFAYSAALAAEPYPEGWGSWPVLGVTVVYMLGVFAVAVLFWGGWY 110 >gi|159036368|ref|YP_001535621.1| hypothetical protein Sare_0711 [Salinispora arenicola CNS-205] gi|157915203|gb|ABV96630.1| conserved hypothetical protein [Salinispora arenicola CNS-205] Length = 187 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 76/181 (41%), Gaps = 5/181 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+ + +A+++ V V + + +SL +F+ +LL +V ++ +++ V Sbjct: 5 VVFWALAVVAVLAGAAVFVVDSMARASYSLAVSFIVVGLQVMLLQQRYVGVLIILMMVME 64 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + + +++ M + ++ + G + + + L+ + F A R Sbjct: 65 MAIMAVYMNMFMGMNPALMSMNMVHGTRHALPVSVGVFVLLAAGALF----APWPSRRGS 120 Query: 126 FKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL-MLRHRRDIKRQDISKQLESNP 184 + +G L + G ++ ++++G +VL R R D D+ ++ ++P Sbjct: 121 PPDDVTAALGTELMGPKMLTMAAVGVVMAVTIVGGVVLAAHRTRYDRFGDDLRRRPAADP 180 Query: 185 D 185 Sbjct: 181 Q 181 >gi|12249176|ref|NP_066227.2|ND6_15504 NADH dehydrogenase subunit 6 [Fasciola hepatica] gi|12248352|gb|AAG13155.2| NADH dehydrogenase subunit 6 [Fasciola hepatica] Length = 150 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGL-FLLLGAEFVAMITLVVYVGAVIV 68 + + + V +PI LI A ++ +GL +L++G + ++ +VYVG V V Sbjct: 5 ILAKVYFSCLLGFSFVSHPIVYCLLLIGAALSISGLGYLVVGFSWYLVVFCLVYVGGVYV 64 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F+F+ + P F G G++ +C +F+ FS + Sbjct: 65 LFIFV--------SIHTPNPLPNFSGIGIDGLVLFFGFLCVFSFVFFSVPSLCDSSFYLC 116 Query: 129 NNVENIGKVLY 139 ++ E + L+ Sbjct: 117 SSFEGLSYCLF 127 >gi|5835371|ref|NP_007405.1|ND6_12156 NADH dehydrogenase subunit 6 [Macropus robustus] gi|2829773|sp|P92670|NU6M_MACRO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1850873|emb|CAA71547.1| NADH dehydrogenase subunit 6 [Macropus robustus] Length = 167 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 44/108 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + + + +P+Y SL+ + + + L F+ +I ++Y Sbjct: 1 MKMMVVFLFSILLVFGFVAFASKPSPVYGGLSLVVSGGLGCAIVVSLEDVFLGLIVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + M + + F I+ + + + Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNTVALSMLLFTVIVESAWYLMSG 108 >gi|327199766|gb|AEA36030.1| NADH dehydrogenase subunit 6 [Calyptorhynchus baudinii] gi|327199780|gb|AEA36043.1| NADH dehydrogenase subunit 6 [Calyptorhynchus latirostris] Length = 172 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 44/103 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F I+++ V + +P Y V L+ + G + LG FV+++ +VY+G Sbjct: 2 AYFVLFLGVSFILAALAVASNPSPYYGVIGLVLGSIVGCGWLMSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A ++ ++ +V Sbjct: 62 GMLVVFVYSVSLAADPFPQAWGDRRVLVYIVGLALVIVLGSVV 104 >gi|215979747|ref|YP_002333243.1| NADH dehydrogenase subunit 6 [Takifugu ocellatus] gi|215422697|dbj|BAG85533.1| NADH dehydrogenase subunit 6 [Takifugu ocellatus] Length = 173 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G F++++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60 Query: 64 GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 G ++V F++ + A + F GIL +++ + S E Sbjct: 61 GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEEVWWGVSGEM 120 Query: 120 ELSRL 124 + + Sbjct: 121 DWDAV 125 >gi|226463879|ref|YP_002791131.1| NADH dehydrogenase subunit 6 [Anguis fragilis] gi|167030971|gb|ABZ05731.1| NADH dehydrogenase subunit 6 [Anguis fragilis] Length = 173 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F F I++ V + +P Y L+ + V G+ + +G F++++ ++Y Sbjct: 1 MSYLVFVFF-MCLILTLVWVASNPSPYYGAAGLVSSAVVGCGILVGMGYSFISLVLFLIY 59 Query: 63 VGAVIVFFLFIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 +G ++V F++ + + + E R FLG FF +L I+ + + ++E Sbjct: 60 LGGMLVVFVYTVSLAAEPHPEALGSRAGVYFLGYFFAFVLLGGGIIGGWDVVGLNSEVRT 119 Query: 122 S 122 S Sbjct: 120 S 120 >gi|23397378|ref|NP_694926.1| NADH dehydrogenase subunit 6 [Takifugu rubripes] gi|215979565|ref|YP_002333074.1| NADH dehydrogenase subunit 6 [Takifugu exascurus] gi|215979593|ref|YP_002333100.1| NADH dehydrogenase subunit 6 [Takifugu chrysops] gi|215979607|ref|YP_002333113.1| NADH dehydrogenase subunit 6 [Takifugu niphobles] gi|215979621|ref|YP_002333126.1| NADH dehydrogenase subunit 6 [Takifugu obscurus] gi|215979663|ref|YP_002333165.1| NADH dehydrogenase subunit 6 [Takifugu stictonotus] gi|215979677|ref|YP_002333178.1| NADH dehydrogenase subunit 6 [Takifugu snyderi] gi|215979691|ref|YP_002333191.1| NADH dehydrogenase subunit 6 [Takifugu vermicularis] gi|215979719|ref|YP_002333217.1| NADH dehydrogenase subunit 6 [Takifugu chinensis] gi|255764530|ref|YP_003097553.1| NADH dehydrogenase subunit 6 [Takifugu fasciatus] gi|23306928|emb|CAD13219.1| NADH dehydrogenase subunit 6 [Takifugu rubripes] gi|86604630|dbj|BAE79215.1| NADH dehydrogenase subunit 6 [Takifugu rubripes] gi|215422543|dbj|BAG85390.1| NADH dehydrogenase subunit 6 [Takifugu chrysops] gi|215422557|dbj|BAG85403.1| NADH dehydrogenase subunit 6 [Takifugu niphobles] gi|215422571|dbj|BAG85416.1| NADH dehydrogenase subunit 6 [Takifugu obscurus] gi|215422613|dbj|BAG85455.1| NADH dehydrogenase subunit 6 [Takifugu stictonotus] gi|215422627|dbj|BAG85468.1| NADH dehydrogenase subunit 6 [Takifugu snyderi] gi|215422641|dbj|BAG85481.1| NADH dehydrogenase subunit 6 [Takifugu vermicularis] gi|215422669|dbj|BAG85507.1| NADH dehydrogenase subunit 6 [Takifugu chinensis] gi|215422753|dbj|BAG85585.1| NADH dehydrogenase subunit 6 [Takifugu exascurus] gi|255361315|gb|ACU09513.1| NADH dehydrogenase subunit 6 [Takifugu fasciatus] Length = 173 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G F++++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60 Query: 64 GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 G ++V F++ + A + F GIL +++ + S E Sbjct: 61 GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEEVWWGVSGEM 120 Query: 120 ELSRL 124 + + Sbjct: 121 DWDAV 125 >gi|38707582|ref|NP_944761.1| NADH dehydrogenase subunit 6 [Monodon monoceros] gi|38602583|emb|CAD88038.1| NADH6 protein [Monodon monoceros] Length = 175 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +IS V + +PIY LI + G+ G F+ ++ ++Y Sbjct: 1 MMMYIVFIMSVIFVISIVGVSSKPSPIYGGLGLIVSGAMGCGIVFSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + M A + LG F G++ L+V + Sbjct: 61 LGGMLVVFGYTAAMATEQYPEA-WISNKVVLGGFLSGLVVEFLMVLYVLW 109 >gi|270153142|gb|ACZ61154.1| NADH dehydrogenase subunit 6 [Capra hircus] gi|270153156|gb|ACZ61167.1| NADH dehydrogenase subunit 6 [Capra hircus] Length = 175 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFITGLLMEFLMV 104 >gi|207559796|gb|ACI24404.1| NADH dehydrogenase subunit 6 [Ammotragus lervia] Length = 175 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFITGLLMEFLMV 104 >gi|294494370|gb|ADE93054.1| NADH dehydrogenase subunit 6 [Seriola fasciata] gi|294494373|gb|ADE93056.1| NADH dehydrogenase subunit 6 [Seriola fasciata] gi|294494376|gb|ADE93058.1| NADH dehydrogenase subunit 6 [Seriola fasciata] Length = 173 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + + E R ++ + +G++ + + Sbjct: 62 GMLVVFAYSAALAAEPYPETWGSRPVVTYMAVYLVGVMLVAALFWGGWY 110 >gi|13898636|gb|AAK48838.1| NADH dehydrogenase subunit 6 [Amazona ochrocephala oratrix] Length = 172 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 42/99 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++++ LV + +P Y V L+F V G + LG FV+++ +VY+G Sbjct: 2 TYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAA 103 ++V F++ + + F ++ Sbjct: 62 GMLVVFVYSVSLAADPFPQVWGGWHTMGCVLGFAFVVGT 100 >gi|256985320|ref|YP_003162757.1| NADH dehydrogenase subunit 6 [Microcanthus strigatus] gi|256542247|dbj|BAH98088.1| NADH dehydrogenase subunit 6 [Microcanthus strigatus] Length = 169 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 45/109 (41%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LF F I+ V + +P ++ L+ G+ + G F++++ ++Y+G ++V Sbjct: 2 FLFLFGFILGLVAVASNPSPYFAALGLVVVAGMGCGVLMGHGGPFLSLVLFLIYLGGMLV 61 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + + + +I I+ + S + FS Sbjct: 62 VFAYSAALAAEPYPESWGSRSVVVYMVIYIVIVIMVSGLFWSGWHEFSW 110 >gi|225679288|gb|EEH17572.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 1022 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 34/93 (36%) Query: 46 FLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 L+L E + + + ++ A F+F + + +GIL + Sbjct: 920 LLMLYLEMLGFVYMYYFIVASAAMFIFAAFVFLTQRHTGKIYSWVAITTRVLLGILLLGM 979 Query: 106 IVCASNFMVFSAEGELSRLVFKGNNVENIGKVL 138 + +NF + + ++F V +G++ Sbjct: 980 VAIVTNFRLVYSFMTNPMIIFTFTLVLLVGELF 1012 >gi|207559978|gb|ACI24573.1| NADH dehydrogenase subunit 6 [Oreamnos americanus] Length = 175 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + + I+ + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYT-TAMAIEQYPEVWVSNKVVLGAFVTGLLMEFLMVW 105 >gi|13928158|dbj|BAB47099.1| NADH dehydrogenase subunit 6 [Megalops cyprinoides] Length = 173 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LF ++ V + P ++ L+ G+ G F+++I ++Y+G ++V Sbjct: 6 FLFLVGLVLGFVAVASNPAPYFAALGLVVVAAIGCGMLASHGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 +F+ E LG + + + L+ +F + ++ + Sbjct: 66 --VFVYSAALAAEPYPESWGDWSVLGYVVVYLFSVGLVGGWLSFGWYGYSWVVADELEGF 123 Query: 129 N 129 + Sbjct: 124 S 124 >gi|256427298|ref|YP_003127062.1| NADH dehydrogenase subunit 6 [Threskiornis aethiopicus] gi|255709637|gb|ACU30726.1| NADH dehydrogenase subunit 6 [Threskiornis aethiopicus] Length = 173 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFVVFLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVAL 73 >gi|226453408|ref|YP_002726149.1| NADH dehydrogenase subunit 6 [Fundulus diaphanus] gi|215511462|gb|ACJ67912.1| NADH dehydrogenase subunit 6 [Fundulus diaphanus] gi|215511476|gb|ACJ67925.1| NADH dehydrogenase subunit 6 [Fundulus diaphanus] Length = 173 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 44/109 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y F ++ V + +P ++ L+ G+ + G F+++I ++Y+G ++V Sbjct: 6 YFLLFSLVLGLAAVASNPSPYFAALGLVVVAGIGCGVLIWHGGGFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L ++ + + ++ +N+ + S Sbjct: 66 VFAYSAALAAEPYPEGWGSWPVLGLVLGYLLGVGSVGMLVGNNWYMESW 114 >gi|327492959|ref|YP_004347912.1| NADH dehydrogenase subunit 6 [Monotrete cochinchinensis] gi|327392460|dbj|BAK09897.1| NADH dehydrogenase subunit 6 [Monotrete cochinchinensis] Length = 173 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 42/108 (38%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P + SL+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGILVWHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + ++GI+ ++ + +S Sbjct: 67 FAYSAALAAEPYPETLGSWPVLVSMLMYVGIVVLVFVLFLGGWEGYSW 114 >gi|255506350|ref|YP_003097147.1| NADH dehydrogenase subunit 6 [Tscherskia triton] gi|152031542|gb|ABS28788.1| NADH dehydrogenase subunit 6 [Tscherskia triton] Length = 174 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F L SF+A+ +PIY LI + L G F+ ++ ++Y Sbjct: 1 MTELIFILSSFIALGC-LGTSLKPSPIYGGMCLIISGCAGCLAVLGFGGSFLGLMVFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +G ++V F + M AE + +GIL + + +V Sbjct: 60 LGGMMVVFGYTTAM------SAEEYPETWVSSWLVLGILVMSMFMELGMTLV 105 >gi|190349369|ref|YP_001974708.1| NADH dehydrogenase subunit 6 [Varanus salvator] gi|189182404|gb|ACD81921.1| NADH dehydrogenase subunit 6 [Varanus salvator] Length = 176 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 37/68 (54%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+ ++ S ++ + +P + V SL+ A G+ ++ G F++++ ++Y+G + V Sbjct: 6 YVMLGGLVVGSLMIGSNPSPFFGVVSLVLLAFVACGILVVSGYSFLSLVLFLIYLGGMTV 65 Query: 69 FFLFIIMM 76 F + + M Sbjct: 66 VFAYSVSM 73 >gi|215979649|ref|YP_002333152.1| NADH dehydrogenase subunit 6 [Takifugu porphyreus] gi|215422599|dbj|BAG85442.1| NADH dehydrogenase subunit 6 [Takifugu porphyreus] Length = 173 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G F+ ++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLPLVLLMIYM 60 Query: 64 GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 G ++V F++ + A + F GIL +++ + S E Sbjct: 61 GGMLVVFIYSSALSANKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEEVWWGVSGEM 120 Query: 120 ELSRL 124 + + Sbjct: 121 DWDAV 125 >gi|116668517|ref|YP_829501.1| NADH dehydrogenase subunit 6 [Apus apus] gi|116634260|emb|CAJ86564.1| NADH dehydrogenase subunit 6 [Apus apus] Length = 173 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 46/110 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G + LG FV+++ +VY+G Sbjct: 2 TYFIVFLAVCFVLGGLAVASNPSPYYGVVGLVVASVVGCGWLVSLGLSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 ++V F++ + + A + G F +L ++V Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWRVMGYGVGFALVLILGVVVGGFVKGW 111 >gi|164519163|ref|YP_001648862.1| NADH dehydrogenase subunit 6 [Hyla japonica] gi|164454423|dbj|BAF96762.1| NADH dehydrogenase subunit 6 [Hyla japonica] Length = 165 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 42/103 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++F + V + +P Y+ L+ + + + GA F++++ +VY+G ++V Sbjct: 3 FMFEVGLVAGFLAVASNPSPYYAALGLVVSAGVGCLILMCGGASFLSLVLFLVYLGGMMV 62 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + ++ A ++ +L +V + Sbjct: 63 VFAYSAALVAEPYPEAWGSVGVMIYLVGYLVLLGLWWVVGGGS 105 >gi|45388027|ref|NP_991013.1| NADH dehydrogenase subunit 6 [Megalops cyprinoides] gi|45259443|dbj|BAD12297.1| NADH dehydrogenase subunit 6 [Megalops cyprinoides] Length = 173 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LF ++ V + P ++ L+ G+ G F+++I ++Y+G ++V Sbjct: 6 FLFLVGLVLGFVAVASNPAPYFAALGLVVVAAIGCGMLASHGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 +F+ E LG + + + L+ +F + ++ + Sbjct: 66 --VFVYSAALAAEPYPESWGDWSVLGYVVVYLFSVGLVGGWLSFGWYGYSWVVADELEGF 123 Query: 129 N 129 + Sbjct: 124 S 124 >gi|207559936|gb|ACI24534.1| NADH dehydrogenase subunit 6 [Naemorhedus griseus] Length = 175 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSIIFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFVTGLLMEFLMV 104 >gi|730208|sp|Q06059|NU6M_ANAPL RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|13970|emb|CAA39143.1| ND6 [Anas platyrhynchos] gi|1945490|gb|AAB52615.1| NADH dehydrogenase subunit 6 [Anas platyrhynchos] Length = 81 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FVA++ +VY G Sbjct: 2 TYFVFFLGICFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYFG 61 Query: 65 AVIVFFLFIIMMLDIDIEVA 84 ++V F++ + + A Sbjct: 62 GMLVVFVYSVALAAEPFPEA 81 >gi|332284475|ref|YP_004416386.1| putative monovalent cation/H+ antiporter subunit A [Pusillimonas sp. T7-7] gi|330428428|gb|AEC19762.1| putative monovalent cation/H+ antiporter subunit A [Pusillimonas sp. T7-7] Length = 789 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 3/112 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + I S+ +V+ R + + S+ A +FLL GA +A V A+ V Sbjct: 609 FVLPLLLIASTIMVLRSRGFVQGIISVGAVGFGVAVVFLLGGAPDLAFTQFSVE--ALSV 666 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 L + + + +PR R IG++ + + +V E Sbjct: 667 VILLAV-IGHMPFRAIDPRPTRQRGRDALIGLMFGLMFIAVMFTVVALPFNE 717 >gi|215979635|ref|YP_002333139.1| NADH dehydrogenase subunit 6 [Takifugu pardalis] gi|215422585|dbj|BAG85429.1| NADH dehydrogenase subunit 6 [Takifugu pardalis] Length = 173 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G F++++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTFLSLVLLMIYM 60 Query: 64 GAVIVFFLFIIMMLDIDIEVA----EPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 G ++V F++ + A + F GIL +++ + S E Sbjct: 61 GGMLVVFIYSSALSADKDPKAPTGWQVVLFFFGYFFFVFGILYTNMVLDEKVWWGVSGEM 120 Query: 120 ELSRL 124 + + Sbjct: 121 DWDAV 125 >gi|119962588|ref|YP_949368.1| monovalent cation/H+ antiporter subunit A [Arthrobacter aurescens TC1] gi|119949447|gb|ABM08358.1| putative NADH ubiquinone oxidoreductase/Multisubunit Na+/H+ antiporter, MnhA/B subunit [Arthrobacter aurescens TC1] Length = 1005 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + ++ + V +V + A +F L GA +A+ ++V IV Sbjct: 613 VAGAGIVVGALAAVRANKRFLAVLMVSVTGYGIALMFALQGAPDLALTQMLV---ETIVL 669 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F++ M + E+ + R + IG ++ + + Sbjct: 670 VAFVLAMRSLPAELRDRTGGRLRVIRVIIGAAFGITMIFVAIY 712 >gi|126792918|gb|ABO27315.1| NADH dehydrogenase subunit 6 [Enicognathus leptorhynchus] Length = 170 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 39/70 (55%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +++S LV + +P Y V L+F + G + LGA FV+++ +VY+G + Sbjct: 4 FLVFLGVSFVLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|5835608|ref|NP_007625.1|ND6_13977 NADH dehydrogenase subunit 6 [Scyliorhinus canicula] gi|6093587|sp|O79412|NU6M_SCYCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|3618242|emb|CAA76030.1| NADH 6 [Scyliorhinus canicula] Length = 173 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 4/112 (3%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 I+ V + +P Y+ L+ A GL + G F+++I ++Y+G ++V F + Sbjct: 10 IGLILGLMGVASNPSPYYAALGLVTAAGVGCGLLVSYGGSFMSLILFLIYLGGMLVVFAY 69 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 + P + ++GI L++ F+V + + Sbjct: 70 TAAL----AAEPYPEAWGDWSVLMYVGIYLTGLVIAGKYFLVGKWGDSWAGV 117 >gi|284177711|ref|YP_003406714.1| NADH dehydrogenase subunit 6 [Naemorhedus caudatus] gi|213990213|gb|ACJ60517.1| NADH dehydrogenase subunit 6 [Naemorhedus caudatus] Length = 175 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSIVFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFVTGLLMEFLMV 104 >gi|116014322|ref|YP_788141.1| NADH dehydrogenase subunit 6 [Verasper moseri] gi|115498281|gb|ABI98724.1| NADH dehydrogenase subunit 6 [Verasper moseri] Length = 173 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 42/113 (37%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFVMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + + G + G + + + S Sbjct: 62 GMLVVFAYSAALAAEPYPESWGSWSVLVYGVVYTGGVMLVSGLFWGGWYESSW 114 >gi|37620572|gb|AAQ95095.1| NADH dehydrogenase subunit 6 [Ommatophoca rossii] Length = 175 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI G+ L G F+ ++ ++Y Sbjct: 1 MMTYVVFILSIIFVVSFVGFSSKPSPIYGGLVLIVGGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WISNKVVLGAFVMGLLLELLFAC 105 >gi|288932062|ref|YP_003436122.1| quinone oxidoreductase [Ferroglobus placidus DSM 10642] gi|288894310|gb|ADC65847.1| quinone oxidoreductase [Ferroglobus placidus DSM 10642] Length = 150 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 2/108 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L L S +++ + V R+ YS + + G + LG V + ++ Sbjct: 1 MSDLVVILLSALSVAMALGVAKSRDNFYSALYMSATLLAVGGTYAYLGVHSVLALIAFIF 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +GAV + + + L S F+ + + S Sbjct: 61 IGAVGIITI--ALAATYRFINPVRHSGYWALFSAFVAVFLGTTLAVFS 106 >gi|92918423|gb|ABE96696.1| NADH dehydrogenase subunit 6 [Lepidochelys olivacea] gi|210971718|emb|CAJ90464.1| NADH dehydrogenase subunit 6 [Lepidochelys olivacea] Length = 174 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LF F + V +P Y V SL+ GL + +G FV+++ ++Y+G ++V Sbjct: 6 FLFGFCFVFWMVGVSCNPSPYYGVLSLVIGAAFGCGLLVSMGGSFVSVVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F + +++ A + + + + + A + ++S EG S + G Sbjct: 66 IFAYSSALVEEPYPAAWGNRGGMI---YVVSYVLVIVGYGAMCYWLWSMEGYGSVTIDAG 122 Query: 129 N 129 Sbjct: 123 G 123 >gi|84626825|gb|ABC59816.1| NADH dehydrogenase subunit 6 [Psittacus erithacus] Length = 171 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 43/110 (39%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +++ LV + +P Y V L+ V G + LG FV+++ +VY+G Sbjct: 2 AYFVLFLGVSFALAALLVASNPSPHYGVVGLVLGSVAGCGWLVSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 ++V F++ + + + + + L V + Sbjct: 62 GMLVVFVYCVSLAADPFPQVWEGWRVVGYALGLVLAVGVGLAVWGWGGGI 111 >gi|187250374|ref|YP_001874864.1| NADH dehydrogenase subunit 6 [Panthera tigris] gi|313768487|ref|YP_004062164.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis] gi|78709126|gb|ABB48052.1| NADH dehydrogenase subunit 6 [Panthera tigris] gi|145558795|gb|ABP73320.1| NADH dehydrogenase subunit 6 [Panthera tigris] gi|301506369|gb|ADK77660.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis] gi|301506383|gb|ADK77673.1| NADH dehydrogenase subunit 6 [Panthera tigris amoyensis] Length = 175 Score = 36.9 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTIFVVSFVSFSSKPSPIYGGLGLIVAGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K LG+F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGAFITGVLAELLTAC 105 >gi|110628418|gb|ABG79682.1| NADH dehydrogenase subunit 6 [Eleginops maclovinus] Length = 173 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 44/103 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F YLF ++ +V +P ++ F L+ G+ + G F++++ ++Y+G Sbjct: 2 AYFVYLFMVGLVLGMAVVAVNLSPYFAAFGLVVVAGMGCGVIISFGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + +G++ I+ Sbjct: 62 GMLVVFVYSAALAAEPFPESFGTTGAVLYFMGLVGVVGVFAIL 104 >gi|27228469|ref|NP_758791.1| NADH dehydrogenase subunit 6 [Alligator sinensis] gi|26284461|gb|AAN84928.1| NADH dehydrogenase subunit 6 [Alligator sinensis] Length = 171 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ F F ++ + +V ++V SL+F V +GL ++ G F+ ++ L++Y Sbjct: 1 MEITLF--FCCFMLVCAMMVAASSMIHFAVVSLLFVAVFGSGLVVVEGGSFMPLVVLLIY 58 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F F + D +G + +++G+L + Sbjct: 59 LGGLLVVFAFCVGFTDDPFMGFWGVGVSKGAVFLYWVGLLIGICCAWGYLW 109 >gi|110747873|gb|ABG89466.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747881|gb|ABG89472.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747885|gb|ABG89475.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747889|gb|ABG89478.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747897|gb|ABG89484.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747909|gb|ABG89493.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747965|gb|ABG89535.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747973|gb|ABG89541.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747985|gb|ABG89550.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747989|gb|ABG89553.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110747993|gb|ABG89556.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748021|gb|ABG89577.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748045|gb|ABG89595.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748053|gb|ABG89601.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748065|gb|ABG89610.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748093|gb|ABG89631.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748097|gb|ABG89634.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748101|gb|ABG89637.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748153|gb|ABG89676.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748173|gb|ABG89691.1| NADH dehydrogenase subunit 6 [Loxodonta africana] gi|110748201|gb|ABG89712.1| NADH dehydrogenase subunit 6 [Loxodonta africana] Length = 175 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 17/178 (9%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + S ++ + +P+Y SL+ + G+ + G F+ ++ +VY Sbjct: 1 MMYIVF-IMSVFYVVGFIGFSSKPSPVYGGMSLVVSGGLGCGIVMSSGGSFLGLVVFLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFS 116 +G ++V +F E E + S F+ L E+ + F + F Sbjct: 60 LGGMMV--VFGYTTAMATEEYPETWGSNVVVLSAFLVGLLMEIFMVMWLFSGEHELVGFY 117 Query: 117 AEGELSRLVFKGNNVENI------GKVLYTQYAYPLE-ISGFILLLSMIGAIVLMLRH 167 G +V E + G LY+ Y + ++G++L +S+ AI + + Sbjct: 118 FSGLEGLMVLGEGGFEYVREDYSGGASLYS-YGFWFLAMAGWMLFVSIFIAIEVTRKR 174 >gi|2459595|gb|AAB71749.1| NADH dehydrogenase subunit 6 [Cuculus canorus canorus] gi|2459597|gb|AAB71750.1| NADH dehydrogenase subunit 6 [Cuculus canorus telephonus] Length = 155 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 35/75 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G L LG FV+++ ++Y+G ++V Sbjct: 2 FLGVCFVLGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMIYLGGMLVV 61 Query: 70 FLFIIMMLDIDIEVA 84 F++ + + A Sbjct: 62 FVYSVSLAADPFPEA 76 >gi|270267432|ref|YP_003331131.1| NADH dehydrogenase subunit 6 [Proedromys sp. BBH-2008] gi|213516901|gb|ACJ49882.1| NADH dehydrogenase subunit 6 [Proedromys liangshanensis] Length = 174 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 7/124 (5%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 Y S + + +PIY LI + + L G F+ ++ ++Y+G + Sbjct: 4 LIYFLSLVIALGCLGTSLKPSPIYGGLCLIVSGCSGCLAVLGFGGSFLGLMVFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + M D A ++ S+ + I + S+ E + ++ Sbjct: 64 LVVFGYTTAMSAEDYPEA-------WVSSWLTVGVLLMSIFMELGMLFVSSYYEGAEMML 116 Query: 127 KGNN 130 + N+ Sbjct: 117 EFNS 120 >gi|226463957|ref|YP_002791209.1| NADH dehydrogenase subunit 6 [Chamaeleo monachus] gi|124055062|gb|ABM89680.1| NADH dehydrogenase subunit 6 [Chamaeleo monachus] Length = 169 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 V + +P + SL A + AG+ L + FV+++ ++VY+G ++V F++ + M Sbjct: 15 GVASNPSPYFGAVSLALASILGAGVVAGLSSTFVSLVLMLVYLGGMLVVFVYSVAMSSDM 74 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 A + F+G L + Sbjct: 75 YPEAWGNRSVFLYIIGFLGYLFCLWWYIGGEW 106 >gi|270153128|gb|ACZ61141.1| NADH dehydrogenase subunit 6 [Capra hircus] gi|270153170|gb|ACZ61180.1| NADH dehydrogenase subunit 6 [Capra hircus] Length = 175 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFITGLLMEFLMV 104 >gi|296099610|gb|ADG95216.1| NADH dehydrogenase subunit 6 [Polypterus delhezi] Length = 167 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 47/110 (42%), Gaps = 2/110 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS + ++S V + +P ++ F L+ G+ + G F++M+ ++Y+G Sbjct: 2 VLMVVFSIIFLVSLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMVLFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNFM 113 ++V F + + A + LG F+ ++ V + Sbjct: 62 MLVVFAYSAALAAEPYPAAWGSWEVFSYVLGYMFLIVVGWVAFVGDFGLL 111 >gi|317097274|ref|YP_004123476.1| NADH dehydrogenase subunit 6 [Procapra przewalskii] gi|284176541|gb|ADB81007.1| NADH dehydrogenase subunit 6 [Procapra przewalskii] Length = 175 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNKTVLGAFVTGLLMEFLMV 104 >gi|207559908|gb|ACI24508.1| NADH dehydrogenase subunit 6 [Damaliscus pygargus] Length = 175 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 12/167 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMVYIVFILSIIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF-----MVFSA 117 +G ++V F + M LG+F G+L ++V +VF Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WVSNTTVLGAFVTGLLMEFMMVYYVLKDEEIEIVFKF 119 Query: 118 EGELSRLVFKGNNV-----ENIGK-VLYTQYAYPLEISGFILLLSMI 158 G +++ + E +G LY+ + + ++G+ LL+ ++ Sbjct: 120 NGLGDWVIYDTGDSGFFSEEAMGIAALYSYGTWLVIVTGWSLLVGVV 166 >gi|119360705|ref|YP_913664.1| NADH dehydrogenase subunit 6 [Homaloptera leonardi] gi|119225371|dbj|BAF41725.1| NADH dehydrogenase subunit 6 [Homaloptera leonardi] Length = 173 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 2/115 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL I+ V + P ++ L+ A G+ + G F++++ ++Y+G Sbjct: 2 TYLVYLLLMALIVGLVAVASNPAPYFAALGLVMAAGVGCGVLVSHGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 ++V +F E R +G + +L L+V + Sbjct: 62 GMLV--VFAYSAALAAEPFPEAWGDRSVVGYVLVYLLGVGLMVGLFWDNWYEGSW 114 >gi|156713133|dbj|BAF76631.1| NADH dehydrogenase subunit 6 [Asymmetron lucayanum] Length = 167 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 44/95 (46%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF+F ++++ +V+ ++P +S ++ + + + F AMI +++Y+G ++V Sbjct: 5 LFNFTILLAAMMVIRAKSPYFSALAMALLALLLSITMFQMNLIFPAMILMLIYLGGMLVV 64 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104 F++ I + + G+LA Sbjct: 65 FVYSTAYSADLIPLPMNMTLTLLIAISGTGLLATA 99 >gi|157011956|ref|YP_001315070.2| NADH dehydrogenase subunit 6 [Camelus bactrianus] gi|134302853|gb|ABO70671.1| NADH dehydrogenase subunit 6 [Camelus bactrianus] gi|134302867|gb|ABO70684.1| NADH dehydrogenase subunit 6 [Camelus bactrianus] gi|156615973|gb|ABM65776.2| NADH dehydrogenase subunit 6 [Camelus bactrianus] gi|223972301|dbj|BAH23339.1| NADH dehydrogenase subunit 6 [Camelus bactrianus] Length = 175 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +I + +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYAVFILSIIFVIGFVSFSSKPSPIYGGLGLIVSGGVGCMIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + M K F ++ ++VC Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSNKTVLGAFIFGLVVEISMVVCVL 108 >gi|108793348|ref|YP_637060.1| NADH dehydrogenase subunit 6 [Lagorchestes hirsutus] gi|94481213|dbj|BAE94017.1| NADH dehydrogenase subunit 6 [Lagorchestes hirsutus] Length = 167 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 44/108 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +P+Y SL+ + + + L F+ ++ +VY Sbjct: 1 MKMMVVFLFSILLIFGFVAFASKPSPVYGGLSLVASGGLGCAIVVSLEDVFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + M + + F ++ + + + Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNTVALSMLLFAVVVESVWYLASG 108 >gi|72398619|gb|AAZ72727.1| NADH dehydrogenase subunit 6 [Physarum polycephalum] Length = 165 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ +FF L ++ + N I+++ +LI F+N + L L + F+ ++ Sbjct: 1 MLLSFIFFSLLLYITV--------TPNAIHALLALILLFINFSFLLFLTDSAFLGFAYIL 52 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 VY+GA+ V FL+II++L + R+ Sbjct: 53 VYIGAICVLFLYIILLLHLRSYTLMQRQN 81 >gi|327492875|ref|YP_004347834.1| NADH dehydrogenase subunit 6 [Phoxinus percnurus] gi|327396767|dbj|BAK14185.1| NADH dehydrogenase subunit 6 [Phoxinus percnurus] Length = 173 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 3/115 (2%) Query: 8 FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + +I + V P ++ L+ A G+ + G F++++ ++Y+G + Sbjct: 4 FVFLSLLVLIMGLIAVASNPTPYFAALGLVVAAGVGCGVLVSCGGSFLSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 +V +F E R +G + ++ L+ + + Sbjct: 64 LV--VFAYSAALAAEPFPEAWGSRSVIGYVLVYLVGVSLMAGMFWGDWYGGSWVI 116 >gi|296099722|gb|ADG95320.1| NADH dehydrogenase subunit 6 [Polypterus teugelsi] Length = 167 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +FS + ++S V + +P ++ L+ G+ + G F+++I +VY+G ++V Sbjct: 6 IFSVIFLVSLAAVASNPSPYFAALGLMMGAGAGCGMLMQCGMAFLSLILFLVYLGGMLVV 65 Query: 70 FLFIIMML--DIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 F + + + LG F+ I+ + V Sbjct: 66 FAYSVALTVEPYPYAWGSWEVFSYVLGYMFLVIVMWVMFV 105 >gi|126792904|gb|ABO27308.1| NADH dehydrogenase subunit 6 [Aratinga aurea] Length = 167 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F I +S LV + +P Y V L+F V G + LGA FV+++ +VY+G + Sbjct: 1 FLVFLGISFIXASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGM 60 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 61 LVVFVYSVSL 70 >gi|207559838|gb|ACI24443.1| NADH dehydrogenase subunit 6 [Capra falconeri] gi|207559866|gb|ACI24469.1| NADH dehydrogenase subunit 6 [Capra nubiana] gi|207559880|gb|ACI24482.1| NADH dehydrogenase subunit 6 [Capra pyrenaica] gi|207559894|gb|ACI24495.1| NADH dehydrogenase subunit 6 [Capra sibirica] gi|207559922|gb|ACI24521.1| NADH dehydrogenase subunit 6 [Hemitragus jemlahicus] Length = 175 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFITGLLMEFLMV 104 >gi|299828990|ref|YP_003734884.1| NADH dehydrogenase subunit 6 [Callorhinchus callorynchus] gi|299829031|ref|YP_003734922.1| NADH dehydrogenase subunit 6 [Callorhinchus capensis] gi|298110857|gb|ADI57812.1| NADH dehydrogenase subunit 6 [Callorhinchus callorynchus] gi|298110871|gb|ADI57825.1| NADH dehydrogenase subunit 6 [Callorhinchus capensis] Length = 173 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Query: 6 LFFYLFSFMA-IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++F + M II V + +P ++ F L+ + GL G F++ + ++Y+G Sbjct: 2 IYFVMLMLMCFIIGLVGVASNPSPYFAAFGLVMSAAIGCGLLASHGTSFLSFVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F++ + AEP + + ++ L V + F + + Sbjct: 62 GMLVVFVYSAALT------AEPYPESWLDWPVLVNVMMYLLGVGVGVYYFFGGWNMMHWM 115 Query: 125 VFKGNN 130 N Sbjct: 116 GVDELN 121 >gi|239735214|dbj|BAH70432.1| NADH dehydrogenase subunit 6 [Plica plica] Length = 174 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 M F + + I+ +VV +P + L+F+ V + GL + LG FV+++ ++ Sbjct: 1 MVYALFIVL--VCIMGGLMVVASNPSPYFGAVGLVFSAVFSCGLLVELGGSFVSLVLFLI 58 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 Y+G ++V F + + + G +I ++ V Sbjct: 59 YLGGMLVVFAYSVALASDQYPETLGTWSVGVYSISYIFLVVVVWGVFIEG 108 >gi|149183030|ref|ZP_01861484.1| MrpA [Bacillus sp. SG-1] gi|148849260|gb|EDL63456.1| MrpA [Bacillus sp. SG-1] Length = 796 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L + + ++S+ ++ ++ + S+ +L + A F+L A +A+ LV+ +V Sbjct: 629 LIALVMVVSAVAILFAKSRLTSIIALGAVGYSVALFFVLFRAPDLALTQLVIETVSVA-- 686 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 LF++ + + LG+ I I ++V +S + S + Sbjct: 687 -LFLLCFYHLPPLSRHEERMSFKLGNALIAI-GVGVVVTLITIASYSTKLSSSISQYYIE 744 Query: 130 NV 131 NV Sbjct: 745 NV 746 >gi|49146284|ref|YP_025932.1| NADH dehydrogenase subunit 6 [Cucumaria miniata] gi|37730871|gb|AAR02394.1| NADH dehydrogenase subunit 6 [Cucumaria miniata] Length = 161 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 37/67 (55%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FYLF ++ S +V +P Y+ L+ + + + G F+A++ L++Y+G Sbjct: 1 MVFYLFMVFLLLGSTMVFYSLSPYYAALGLVLSSLFGCVILGFCGVSFLALLLLLIYMGG 60 Query: 66 VIVFFLF 72 ++V F++ Sbjct: 61 MLVVFIY 67 >gi|288903282|ref|YP_003433927.1| NADH dehydrogenase subunit 6 [Epinephelus bruneus] gi|219562605|gb|ACL27755.1| NADH dehydrogenase subunit 6 [Epinephelus bruneus] Length = 173 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F + I+ + V + +P + L+ G+ + G+ F+A+I + Sbjct: 1 MCFAVICFLIC---WIVGAIAVASNPSPFFGALGLVMVAGVGRGVLVEYGSPFLALILFL 57 Query: 61 VYVGAVIVFFLF 72 +Y+G ++V F + Sbjct: 58 IYLGGMLVVFAY 69 >gi|126792900|gb|ABO27306.1| NADH dehydrogenase subunit 6 [Pyrrhura picta] Length = 167 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G + Sbjct: 1 FLVFLGVGFVLASLLVASXPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGM 60 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 61 LVVFVYSVSL 70 >gi|238866846|ref|YP_002929307.1| NADH dehydrogenase subunit 6 [Galago senegalensis] gi|238809367|dbj|BAH69193.1| NADH dehydrogenase subunit 6 [Galago senegalensis] Length = 175 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 43/106 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L S + ++ + +PIY LI + G+ + G F+ ++ +VY+G ++V Sbjct: 6 FLLSMLFVLGFVGFSSKPSPIYGGLCLIISGGVGCGIVMGFGGTFMGLMVFLVYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 F + M + + + ++ LI+ + V Sbjct: 66 VFGYTTAMATEEYPESWGSNMVVWGALLMGVVMEVVLILFMGEYGV 111 >gi|226453395|ref|YP_002791040.1| NADH dehydrogenase subunit 6 [Bison bison] gi|157778815|gb|ABV70944.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959394|gb|ADF48935.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959408|gb|ADF48948.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959422|gb|ADF48961.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959436|gb|ADF48974.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959450|gb|ADF48987.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959464|gb|ADF49000.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959478|gb|ADF49013.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959492|gb|ADF49026.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959506|gb|ADF49039.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959520|gb|ADF49052.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959534|gb|ADF49065.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959548|gb|ADF49078.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959562|gb|ADF49091.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959576|gb|ADF49104.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959590|gb|ADF49117.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959604|gb|ADF49130.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959618|gb|ADF49143.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959632|gb|ADF49156.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959646|gb|ADF49169.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959660|gb|ADF49182.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959674|gb|ADF49195.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959688|gb|ADF49208.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959702|gb|ADF49221.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959716|gb|ADF49234.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959730|gb|ADF49247.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959744|gb|ADF49260.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959758|gb|ADF49273.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959772|gb|ADF49286.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959786|gb|ADF49299.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959800|gb|ADF49312.1| NADH dehydrogenase subunit 6 [Bison bison] gi|294959814|gb|ADF49325.1| NADH dehydrogenase subunit 6 [Bison bison] Length = 175 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 +G ++V F + M + LG+F G+L Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFITGLL 98 >gi|166851930|ref|YP_001661340.1| NADH dehydrogenase subunit 6 [Hylomys suillus] gi|166788158|emb|CAP18916.1| NADH dehydrogenase subunit 6 [Hylomys suillus] Length = 176 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 1/112 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L ++ S + ++ + + +PIY LI + G+ + G F+ M+ +VY Sbjct: 1 MTILMSFILSGIFVVGFAIFSSKPSPIYGGVGLIVSGGVGCGIVMNYGGSFLGMLVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +G ++V F + L +D + L IG+++ +V + + + Sbjct: 61 LGGMLVVFGYT-TALAMDEYPEMWLTNKAVLAGLLIGLVSELALVLLAKYEI 111 >gi|55583410|ref|YP_138316.1| NADH dehydrogenase subunit 6 [Microhyla heymonsi] gi|46981661|gb|AAT07910.1| NADH dehydrogenase subunit 6 [Microhyla heymonsi] Length = 166 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 48/111 (43%), Gaps = 7/111 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F + ++ V + + Y+ L+ + + + G F++++ +VY+G ++V Sbjct: 2 IFELVLLVGFVAVASNPSLYYAALGLVVGAGSGCLMLINGGMTFLSLVLFLVYLGGMMVV 61 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 F + ++ A + + + + A L+V ++++ + G Sbjct: 62 FAYSAALVAEPYPEA-------WGSVWVLSYIGAYLVVLTVGWLLWGSFGS 105 >gi|311788475|gb|ADQ12859.1| NADH dehydrogenase subunit 6 [Neosalanx anderssoni] Length = 173 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 2/110 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + P ++ L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLAGLVLGLVAVASNPAPYFAALGLVVAAGAGCGILVGHGGPFLSLVLFLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +F E R LG +LA ++ + + Sbjct: 66 -VFAYSAALAAEPYPETWGDRSVLGYVVGYLLAVGVMAGWFWGGWYESSW 114 >gi|256824390|ref|YP_003148350.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter subunit MnhA [Kytococcus sedentarius DSM 20547] gi|256687783|gb|ACV05585.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit [Kytococcus sedentarius DSM 20547] Length = 978 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 32 VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91 VF + A LFLL GA +A+ ++V ++ V F+ ++ L + R R Sbjct: 631 VFLVGVTGYGVAMLFLLHGAPDLALTQVLVETVSIAV-FVLVLRRLPVKFRDFSTRLDRR 689 Query: 92 FLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + I + ++ + V A L Sbjct: 690 LRWALGIAVGLVMFLLALTAAAVRQAPPASGILA 723 >gi|261866635|ref|YP_003264289.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama amblycephala tetraploid hybrid] gi|260595471|gb|ACX46727.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama amblycephala tetraploid hybrid] Length = 173 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLVGVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V +F E R LG + +L L+ + Sbjct: 60 LGGMLV--VFAYSAALAAEPYPEAWGSRSVLGYVLVYLLGVGLVAGFFWGGWYEGSW 114 >gi|226453460|ref|YP_002726322.1| NADH dehydrogenase subunit 6 [Fundulus grandis] gi|215511490|gb|ACJ67938.1| NADH dehydrogenase subunit 6 [Fundulus grandis] Length = 173 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 49/115 (42%), Gaps = 2/115 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++F LFS + +++ V + +P ++ L+ G+ + G F+++I ++Y Sbjct: 2 MYMMYFLLFSLVLGLAA--VASNPSPYFAALGLVVVAGIGCGVLIWHGGGFLSLILFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + L ++ + ++ +S+ S Sbjct: 60 LGGMLVVFAYSAALAAEPYPEGWGSWPVLGLMLGYLLGVGGVGMLFSSSMYDGSW 114 >gi|157011976|ref|YP_001315083.2| NADH dehydrogenase subunit 6 [Camelus ferus] gi|156615980|gb|ABM65799.2| NADH dehydrogenase subunit 6 [Camelus ferus] Length = 175 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +I + +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYAVFILSIVFVIGFVSFSSKPSPIYGGLGLIVSGGVGCMIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + M K F ++ ++VC Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSNKTVLGAFIFGLVVEIAMVVCVL 108 >gi|197311211|ref|YP_002154528.1| NADH dehydrogenase subunit 6 [Menidia menidia] gi|197304272|dbj|BAG69231.1| NADH dehydrogenase subunit 6 [Menidia menidia] Length = 173 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 45/108 (41%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ V + +P ++ L+ G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLIGLVLGLVAVASNPSPYFAALGLVAVAGVGCGILVGHGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 F + + + + LG + G+ +V + N+ S Sbjct: 66 VFAYSTALAAERHPESWGSLQVLGLGLVYAGVTVMTALVFSGNWYSAS 113 >gi|19032393|gb|AAL83413.1| NADH dehydrogenase subunit 6 [Trichosurus caninus] Length = 167 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 46/115 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +PIY SL+ + + + + L F+ ++ +VY Sbjct: 1 MKMMVVFLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLENTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M + + F F + + V +A Sbjct: 61 LGGMLVVFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEIEVDTA 115 >gi|296099666|gb|ADG95268.1| NADH dehydrogenase subunit 6 [Polypterus mokelembembe] Length = 167 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS + +IS V + +P ++ F L+ G+ + G F++M+ ++Y+G Sbjct: 2 VLMVVFSVIFLISLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMVLFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIVCASNF 112 ++V F + + A + LG F+ I+A + V Sbjct: 62 MLVVFAYSAALAAEPYPHAWGSWEVFSYVLGYMFLVIVAWVMFVGDLGL 110 >gi|134302891|gb|ABO70707.1| NADH dehydrogenase subunit 6 [Camelus ferus] gi|134302905|gb|ABO70720.1| NADH dehydrogenase subunit 6 [Camelus ferus] Length = 175 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +I + +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYAVFILSIVFVIGFVSFSSKPSPIYGGLGLIVSGGVGCMIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + M K F ++ ++VC Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSNKTVLGAFIFGLVVEIAMVVCVL 108 >gi|225423191|gb|ACN91094.1| NADH dehydrogenase subunit 6 [Tetraophasis szechenyii] gi|238550591|gb|ACR44442.1| NADH dehydrogenase subunit 6 [Tetraophasis szechenyii] Length = 173 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVNLGVSFVSLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR 86 >gi|189492636|gb|ACE01346.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] Length = 175 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGLATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|27543959|dbj|BAC54785.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus] Length = 175 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFVTGLLMELFMV 104 >gi|280978431|ref|YP_003345357.1| NADH dehydrogenase subunit 6 [Stemonidium hypomelas] gi|13928182|dbj|BAB47116.1| NADH dehydrogenase subunit 6 [Stemonidium hypomelas] gi|271280576|dbj|BAI53378.1| NADH dehydrogenase subunit 6 [Stemonidium hypomelas] Length = 173 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 2/101 (1%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF + ++ V + P ++ L+ A G+ G FVA++ ++Y+G + Sbjct: 4 FIFLFLVVLMLGFLGVASNPAPYFAALGLVLATAGGCGILAGFGGSFVALVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +V +F E LG +L L V Sbjct: 64 LV--VFAYSAALAAEPYPESWGDWSVLGYVIGYLLLCGLGV 102 >gi|325126759|ref|YP_004285904.1| NADH dehydrogenase subunit 6 [Aratinga pertinax chrysogenys] gi|304365501|gb|ADM26311.1| NADH dehydrogenase subunit 6 [Aratinga pertinax chrysogenys] Length = 170 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 1/114 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +++S LV + +P Y V L+F V G + LGA FV+++ +VY+G + Sbjct: 4 FLVFLGISFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +V F++ + + A R G++ F + + F V + + Sbjct: 64 LVVFVYSVSLAADPFPQAWGGRHAVGYVLGFVPAGVGLVVWGWGGGFKVGTVDS 117 >gi|280978334|ref|YP_003345267.1| NADH dehydrogenase subunit 6 [Facciolella oxyrhyncha] gi|271280758|dbj|BAI53482.1| NADH dehydrogenase subunit 6 [Facciolella oxyrhyncha] Length = 172 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 36/70 (51%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF M ++ V + +P ++ L+ + G+ G FV+++ ++Y+G + Sbjct: 4 FIFLFLIMLVLGVVGVASNPSPYFAALGLVVSAAGGCGILAGYGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F + + + Sbjct: 64 LVVFAYSVAL 73 >gi|7555774|ref|NP_054670.1|ND6_15288 NADH dehydrogenase subunit 6 [Ciconia boyciana] gi|7416030|dbj|BAA93659.1| NADH dehydrogenase subunit 6 [Ciconia boyciana] Length = 173 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 47/103 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +L + + V + +P Y V L+ A V G L LGA FV+++ +VY+G Sbjct: 2 AYFMFLLGGCFALGALAVASNPSPYYGVVGLVVASVVGCGWLLSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A ++ G I +L V Sbjct: 62 GMLVVFVYSVALAADPFPEAWGSRQVVMYGVGLILVLMVGGAV 104 >gi|786226|gb|AAC09440.1| cob intron3 ORF [Marchantia polymorpha] Length = 1224 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 22/128 (17%) Query: 41 NAAGLFLLLGAEFVAMITLVVYVG--------AVIVFFLFIIMMLDIDIEVAEPRKKRGF 92 A+ F+++ F + Y V++ L I+ I P + F Sbjct: 88 GASMFFIVVYLHFFRGLYYGSYASPRELVWCLGVVILLLMIVTAF---IGYVLPWGQMSF 144 Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT-QYAYPLEISGF 151 G+ I LA+ + V + + G F +N ++ Y P I+G Sbjct: 145 WGATVITSLASAIPVVGDTIVTWLWGG------FSVDNATL--NRFFSLHYLLPFIIAGA 196 Query: 152 -IL-LLSM 157 IL L ++ Sbjct: 197 SILHLAAL 204 >gi|322422796|ref|YP_004222584.1| NADH dehydrogenase subunit 6 [Clupeonella cultriventris] gi|317176549|dbj|BAJ54361.1| NADH dehydrogenase subunit 6 [Clupeonella cultriventris] Length = 173 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 40/102 (39%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + P ++ F L+ + + + G F+A+ ++Y+G ++V F + Sbjct: 13 VLGMVGVASNPAPYFAAFGLVLSSGAGCAVLAMFGTPFLALGLFLIYLGGMLVVFGYSAA 72 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + F++ ++ L+ ++ SA Sbjct: 73 LAADPHPETWGDASVFEHAMFYLALVVGGLLYFGPSWYDLSA 114 >gi|298110829|gb|ADI57786.1| NADH dehydrogenase subunit 6 [Ovis ammon] Length = 175 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFVTGLLMEFFMV 104 >gi|153127174|ref|YP_001382093.1| NADH dehydrogenase subunit 6 [Meles anakuma] gi|152962745|dbj|BAF73981.1| NADH dehydrogenase subunit 6 [Meles meles anakuma] Length = 177 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F+LI G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGFALIIGGAVGCGVVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F +G+L+ L+ Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVVGLLSELLMA 104 >gi|146149049|ref|YP_001165454.1| NADH dehydrogenase subunit 6 [Microhyla ornata] gi|94315535|gb|ABF14630.1| NADH dehydrogenase subunit 6 [Microhyla ornata] Length = 167 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F ++ V + +P ++ L+ + + + G F++++ +VY+G ++V Sbjct: 2 VFELWLLVGFVAVASNPSPYFAALGLVVGAGSGCLMLINGGLTFLSLVLFLVYLGGMMVV 61 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 F + ++ A + + + + L+V ++++ +E Sbjct: 62 FAYSAALVAEPYPEA-------WGSVWVLSYIGVYLLVLTVGWLLWGSEA 104 >gi|7549737|ref|NP_054683.1|ND6_15289 NADH dehydrogenase subunit 6 [Ciconia ciconia] gi|7416046|dbj|BAA93673.1| NADH dehydrogenase subunit 6 [Ciconia ciconia] Length = 173 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L + + V + +P Y V L+ A V G L LGA FV+++ +VY+G Sbjct: 2 AYFMLLLGGCFALGALAVASNPSPYYGVVGLVVASVVGCGWLLSLGASFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A ++ G I +L V Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGSRQVVMYGVGLILVLMVGGAV 104 >gi|294494409|gb|ADE93080.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494412|gb|ADE93082.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494415|gb|ADE93084.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494418|gb|ADE93086.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494421|gb|ADE93088.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494424|gb|ADE93090.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494427|gb|ADE93092.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494430|gb|ADE93094.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494433|gb|ADE93096.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494436|gb|ADE93098.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494439|gb|ADE93100.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494442|gb|ADE93102.1| NADH dehydrogenase subunit 6 [Seriola zonata] gi|294494445|gb|ADE93104.1| NADH dehydrogenase subunit 6 [Seriola zonata] Length = 173 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + + E R ++ + G++ + + Sbjct: 62 GMLVVFAYSAALAAEPYPETWGSRPVVAYMAVYLAGVVLVSALFWGGWY 110 >gi|242616520|ref|YP_003002019.1| NADH dehydrogenase subunit 6 [Pavo muticus] gi|166066514|gb|ABY80770.1| NADH dehydrogenase subunit 6 [Pavo muticus] Length = 173 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ ++Y+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLMSLGVSFVSLALFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR 86 >gi|166065765|gb|ABY80080.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492594|gb|ACE01307.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492664|gb|ACE01372.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493868|gb|ACE02490.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] Length = 175 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|62184380|ref|YP_220574.1| NADH dehydrogenase subunit 6 [Mus musculus molossinus] gi|167716848|ref|YP_001686709.1| NADH dehydrogenase subunit 6 [Mus musculus musculus] gi|50302083|gb|AAT74384.1| NADH dehydrogenase subunit 6 [Mus musculus molossinus] gi|111380600|gb|ABH09680.1| NADH dehydrogenase subunit 6 [Mus musculus musculus] gi|118200807|gb|ABK79273.1| NADH dehydrogenase subunit 6 [Mus musculus musculus] gi|118200835|gb|ABK79299.1| NADH dehydrogenase subunit 6 [Mus musculus molossinus] Length = 172 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FVLSSLFLVGCLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + M + LG +G++ ++ A N+ Sbjct: 66 VFGYTTAMATEEYPETWG-SNWLILGFLVLGVIMEVFLIYALNY 108 >gi|116672415|ref|YP_833348.1| putative monovalent cation/H+ antiporter subunit A [Arthrobacter sp. FB24] gi|116612524|gb|ABK05248.1| multisubunit sodium/proton antiporter, MrpA subunit / multisubunit sodium/proton antiporter, MrpB subunit [Arthrobacter sp. FB24] Length = 1014 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +I + V +V + A +F L GA +A+ ++V I+ Sbjct: 629 VAGAGIVIGALAAVRANKRFLAVLMVSVTGYGIALMFALQGAPDLALTQMLV---ETIIL 685 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F++ M + E+ + + + IG ++ + + Sbjct: 686 VAFVLAMRSLPAELRDRTGGKYRVIRVIIGAAFGVTMIFVAIY 728 >gi|115494675|ref|YP_778628.1| NADH dehydrogenase subunit 6 [Bufo gargarizans] gi|82395918|gb|ABB72539.1| NADH dehydrogenase subunit 6 [Bufo gargarizans] Length = 164 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 41/105 (39%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF I+ V + +P Y+ L+ + + + GA F+ ++ +VY+G ++V Sbjct: 4 LFELGLIVGLLAVASNPSPYYAALGLVGSAGAGCLILMDGGASFLCLVLFLVYLGGMMVV 63 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 F + ++ A + +L +V N V Sbjct: 64 FAYSAALVAEPYPEAWGGGVVWSYIVVYTVLLGVWWVVGGVNNQV 108 >gi|327555423|gb|AEB01042.1| NADH dehydrogenase subunit 6 [Crocodylus acutus] gi|327555437|gb|AEB01055.1| NADH dehydrogenase subunit 6 [Crocodylus intermedius] Length = 175 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 41/73 (56%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G Sbjct: 3 ITFFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLD 78 ++V F F + D Sbjct: 63 LLVVFAFCVGFTD 75 >gi|225690856|gb|ACO06112.1| NADH dehydrogenase subunit 6 [Paralichthys dentatus] Length = 173 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 45/101 (44%), Gaps = 1/101 (0%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F ++ V + +P ++ F L+ G+ + G F++++ ++Y+G ++V F + Sbjct: 10 FCLVLGLVAVASNPSPYFAAFGLVIVAGMGCGVLIGHGGPFLSLVLFLIYLGGMLVVFAY 69 Query: 73 IIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112 + + R + S+ IG++ A ++ + Sbjct: 70 SAALAAEPYPESWGSRPVLVYSASYMIGVVLASVMFWGGWY 110 >gi|225622229|ref|YP_002726517.1| NADH dehydrogenase subunit 6 [Eretmochelys imbricata] gi|99079658|gb|ABF66064.1| NADH dehydrogenase subunit 6 [Eretmochelys imbricata] Length = 173 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 39/80 (48%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LF F + V +P Y V SL+ GL + +G FV+++ ++Y+G ++V Sbjct: 6 FLFGFCFVFWMVGVSCNPSPYYGVLSLVLGAAFGCGLLVSMGGSFVSVVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRK 88 F + +++ VA + Sbjct: 66 IFAYSSALVEEPYPVAWGNR 85 >gi|294494448|gb|ADE93106.1| NADH dehydrogenase subunit 6 [Seriola zonata] Length = 173 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + + E R ++ + G++ + + Sbjct: 62 GMLVVFAYSAALAAEPYPETWGSRPVVAYMAVYLAGVVLVSALFWGGWY 110 >gi|332886774|dbj|BAK22898.1| NADH dehydrogenase subunit 6 [Salmostoma bacaila] Length = 173 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 2/117 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 F Y F ++ + + P + L+ A G+ + G F++++ ++Y+G Sbjct: 2 DFFIYFFLLALVLGLISIASNPTPYFGALGLVVASGVGCGILVSCGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 ++V +F E + S I +L L V + Sbjct: 62 GMLV--VFAYSTALAADSYPEAWGSWSVIWSVLIYLLGVSLAVAFFWGEWYEGSWAA 116 >gi|238550647|gb|ACR44494.1| NADH dehydrogenase subunit 6 [Lophophorus sclateri] Length = 173 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F ++ V + +P Y V L+ A V G + LG F+++ ++Y+G ++V Sbjct: 7 FLGFCFMLGVLAVASNPSPYYGVVGLVLASVVGCGWLVSLGVSFISLALFMIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKK 89 F++ + + A + Sbjct: 67 FVYSVSLAADPYPEAWGDWR 86 >gi|298292394|ref|YP_003694333.1| integral membrane sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928905|gb|ADH89714.1| integral membrane sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 1129 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 20/105 (19%) Query: 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 +IG+L+ +V + V + + + E +G VL+T Y +L+ Sbjct: 571 GHYIGVLSLLALVIGAILGVIYFQATFAPVAEA----EAVGSVLFTLYF-------ILLI 619 Query: 155 LSMIGA--IVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 ++ + A VL RR Q ESN +++M ++++ K Sbjct: 620 IAGVAAWLFVLAQESRR-------VAQEESNRQTALLMREIEAHK 657 >gi|62184394|ref|YP_220704.1| NADH dehydrogenase subunit 6 [Mystacina tuberculata] gi|61660116|gb|AAX50189.1| NADH dehydrogenase subunit 6 [Mystacina tuberculata] Length = 175 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 1/107 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +IS + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MTVYVAFILSIIFVISFVGFSSKPSPIYGGLGLIVSGGVGCGIVISFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + M + +G G+L ++V + Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVMGGLVSGLLMEGMLVLS 106 >gi|25057779|ref|NP_740008.1| NADH dehydrogenase subunit 6 [Indostomus paradoxus] gi|25005983|dbj|BAC23604.1| NADH dehydrogenase subunit 6 [Indostomus paradoxus] Length = 170 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 41/103 (39%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF + V + +P Y F L+ A G+ + GA F+A+I +VY+G ++V Sbjct: 7 LFMIGFVAGLVAVASNPSPYYGAFGLVVAGGMGCGILVSHGAAFLALILFLVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + ++ +L + N+ Sbjct: 67 FAYAAALAAEPYPEGLLSGEVAIYVGVYVLVLFLGASMFLGNW 109 >gi|108793320|ref|YP_637021.1| NADH dehydrogenase subunit 6 [Phascolarctos cinereus] gi|94481171|dbj|BAE93978.1| NADH dehydrogenase subunit 6 [Phascolarctos cinereus] Length = 168 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M + YLFSF+ +IS + +P+Y SL+ + + + LG+ F+ +I + Sbjct: 1 MDMVMMV-YLFSFLLVISFVAFASKPSPVYGGLSLVVSGGLGCAIVVSLGSTFLGLIMFL 59 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 V G ++V F + M + + F+ +L V + G Sbjct: 60 VIFGGMLVVFGYTAAMSTEEYPESWVSNTVALGMLLFVLLLKLIWYFVLDKVEVATVIG 118 >gi|187250360|ref|YP_001874851.1| NADH dehydrogenase subunit 6 [Panthera pardus] gi|21310360|gb|AAM46196.1| NADH dehydrogenase subunit 6 [Panthera leo] gi|21310363|gb|AAM46198.1| NADH dehydrogenase subunit 6 [Panthera leo] gi|145558781|gb|ABP73307.1| NADH dehydrogenase subunit 6 [Panthera pardus] Length = 175 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTIFVVSFVSFSSKPSPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K LG+F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGAFITGVLAELLTAC 105 >gi|19032396|gb|AAL83415.1| NADH dehydrogenase subunit 6 [Trichosurus caninus] Length = 167 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 46/115 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +PIY SL+ + + + + L F+ ++ +VY Sbjct: 1 MKMMVVFLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLENTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M + + F F + + V +A Sbjct: 61 LGGMLVVFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEVEVDTA 115 >gi|52459787|ref|YP_089647.1| NADH dehydrogenase subunit 6 [Gegeneophis ramaswamii] gi|42406104|gb|AAS13703.1| NADH dehydrogenase subunit 6 [Gegeneophis ramaswamii] Length = 165 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F + + V + +P ++ L+ + + + L F+++I ++Y Sbjct: 1 MEYMIFLGL-IGLVFGTIGVASNPSPYFAALGLVVSAAAGCLVLVGLNMSFLSLILFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A F ++ IL + Sbjct: 60 LGGMLVVFAYSAAMAAEPYPEAWGNFSVVFYVMVYLIILLIGFSLL 105 >gi|110346915|ref|YP_665734.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus] gi|82697223|emb|CAH18628.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus] gi|110083410|dbj|BAE97415.1| NADH dehydrogenase subunit 6 [Gavialis gangeticus] Length = 175 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ LV Y V SL+FA V ++GL ++ G F+ ++ L++Y+G Sbjct: 2 EIAFLFLCCLMLVGVVLVAAGATTHYGVVSLLFAAVLSSGLLVVGGGSFMPIVVLLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAE 104 ++V F F + D + E +G G +G++ Sbjct: 62 GLLVVFAFCVGFTDDEYCEFWGTGASKGVAGVCGVGLMVMG 102 >gi|212725520|ref|YP_002317270.1| NADH dehydrogenase subunit 6 [Trachemys scripta] gi|211906395|gb|ACJ11690.1| NADH dehydrogenase subunit 6 [Trachemys scripta] Length = 174 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 49/108 (45%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SL+ + G+ + +G F++++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVLSLVLGAASGCGVLVGMGGSFMSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +V F + ++ V F+ +++ +I+ + + V Sbjct: 64 LVVFAYSSALVAEPYPVGWGSLGGLVYVVGFVLLVSGLVIMGSFLYGV 111 >gi|93007406|ref|YP_581747.1| NADH dehydrogenase subunit 6 [Platysternon megacephalum] gi|78157480|gb|ABB22855.1| NADH dehydrogenase subunit 6 [Platysternon megacephalum] Length = 174 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 46/106 (43%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLI + G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVLSLILGAASGCGVLVSVGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +V F + ++ + ++ ++ +++ + Sbjct: 64 LVIFAYSAALVAEPYPIGWGSLWGVVYMVVYVLVIIGLVVIGHWLW 109 >gi|77020053|ref|YP_337835.1| NADH dehydrogenase subunit 6 [Pantholops hodgsonii] gi|74419068|gb|ABA03268.1| NADH dehydrogenase subunit 6 [Pantholops hodgsonii] Length = 175 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFITGLLMEFFMV 104 >gi|25057759|ref|NP_739982.1| NADH dehydrogenase subunit 6 [Neocyttus rhomboidalis] gi|25005955|dbj|BAC23578.1| NADH dehydrogenase subunit 6 [Neocyttus rhomboidalis] Length = 173 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P Y+ L+ G+ ++ G F++++ ++Y+G ++V F + + Sbjct: 21 SNPSPYYAALGLVLVAGAGCGILVVCGGGFLSLVLFLIYLGGMLVVFAYSAAL------A 74 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 AEP + + F +L ++V +++ E S + Sbjct: 75 AEPYPEAWGGRAVFGYVLIYIMLVLGASWWAGGGWYEGSWVPV 117 >gi|261864020|gb|ACY01511.1| NADH dehydrogenase subunit 6 [Capra hircus] Length = 175 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFVTGLLMEFLMV 104 >gi|256427193|ref|YP_003126964.1| NADH dehydrogenase subunit 6 [Labracoglossa argentiventris] gi|256353345|dbj|BAH97855.1| NADH dehydrogenase subunit 6 [Labracoglossa argentiventris] Length = 173 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 43/113 (38%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF I+ V + +P ++ L+ G+ + G F+ ++ ++Y+G Sbjct: 2 TFVMSLFLVCLIVGLVAVASNPSPYFAALGLVVVSGMGCGVLVGHGGSFLPLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + + + + ++ ++ + S + S Sbjct: 62 GMLVVFAYCSALAAEPYPESWGSRAVAVYMASYVALVLVMAGLLWSGWYESSW 114 >gi|254939410|dbj|BAH86718.1| NADH dehydrogenase subunit 6 [Oryzias marmoratus] Length = 173 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 62/154 (40%), Gaps = 9/154 (5%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YLF ++ V + +P ++ L+ G+ + G F+++I ++Y+G ++V Sbjct: 6 YLFLIGLVLGLAAVASNPSPYFAALGLVLVAGMGCGVLVGHGGAFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC-----ASNFMVFSAEGELSR 123 F + + L F++ I+ ++V E S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVTLLMVFYLFIVGLMGSYLCEGWFEGTWIVVDEFYEFSL 125 Query: 124 LVFKGNNVENIGKVLYTQYAYPLEISGFILLLSM 157 G + ++Y+ + L ++G++LLLS+ Sbjct: 126 FRGDGGGIA----LIYSSGGFILILAGWVLLLSL 155 >gi|156142574|gb|ABU52052.1| NADH dehydrogenase subunit 6 [Tiaris olivaceus] Length = 166 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FLGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELS 122 F++ + + E G +G F IG++ ++ + F + + EG ++ Sbjct: 61 FVYSVSLAA--EPYPEAWGSSGVIGYGFGIGLVVVVGLMVSGVFGLLTGEGTVN 112 >gi|14010705|ref|NP_114345.1| NADH dehydrogenase subunit 6 [Macaca sylvanus] gi|13940429|emb|CAC37988.1| NADH subunit 6 [Macaca sylvanus] Length = 175 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 2/107 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F S + ++ + +PIY +LI + V + L G +V ++ +VY Sbjct: 1 MTYILF-TLSVLLVMGFVGFSSKPSPIYGGLALIVSGVVGCVIVLNCGGAYVGLMMFLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + M + I+ LG F +G++ +++ Sbjct: 60 LGGMMVVFGYT-MAMAIEEYPETWGSGFEVLGGFLVGLMMEVVLILW 105 >gi|256833647|ref|YP_003162374.1| NADH dehydrogenase (quinone) [Jonesia denitrificans DSM 20603] gi|256687178|gb|ACV10071.1| NADH dehydrogenase (quinone) [Jonesia denitrificans DSM 20603] Length = 1003 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 + + + LV R + ++ + F + A +FLL GA +A+ ++V ++V L + Sbjct: 625 VIVPAVILVARARRRVKAIVLMGFGGYSIAAIFLLHGAPDLALTQVLVETVTIVVMVLVL 684 Query: 74 IMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASN 111 + + + G L + +G+ A L V N Sbjct: 685 RRLPPYFSDRPLRASRFGRLALAIVVGVFAMALAVIIPN 723 >gi|62184436|ref|YP_220548.1| NADH dehydrogenase subunit 6 [Chirocentrus dorab] gi|58430857|dbj|BAD89200.1| NADH dehydrogenase subunit 6 [Chirocentrus dorab] Length = 180 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 9 YLFSFMAIISSFLVVTVRN---PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 YL + V + + P ++ L+ V+ + + GA F+A++ ++Y+G Sbjct: 8 YLIGVSLVGMVLGTVALASNPAPYFAALGLVAVCVSGGVVLMGXGAPFLALVLFLIYLGG 67 Query: 66 VIVFFLF 72 ++V F + Sbjct: 68 MLVVFAY 74 >gi|332886788|dbj|BAK22911.1| NADH dehydrogenase subunit 6 [Macrochirichthys macrochirus] Length = 173 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + +I V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLVAL-VIGLIAVASNPTPYFAALGLVVAAGVGCGILVSCGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V +F E R +G + +L L+ + Sbjct: 60 LGGMLV--VFAYSAALAAEPFPEAWGSRSVVGYVLVYLLGVILVAGLFWGGWYEGSW 114 >gi|327492903|ref|YP_004347860.1| NADH dehydrogenase subunit 6 [Phoxinus percnurus sachalinensis] gi|327396781|dbj|BAK14198.1| NADH dehydrogenase subunit 6 [Phoxinus percnurus sachalinensis] Length = 173 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 7/122 (5%) Query: 8 FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + +I + V P ++ L+ A G+ + G F++++ ++Y+G + Sbjct: 4 FVFLSLLVLIVGLIAVASNPTPYFAALGLVVAAGVGCGVLVSCGGSFLSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + + AEP + S +L + V M + E S ++ Sbjct: 64 LVVFAYSAAL------AAEPFPEAWGSRSVIGYVLVYLVGVSLMAGMFWGGWYEGSWVII 117 Query: 127 KG 128 G Sbjct: 118 DG 119 >gi|218157355|ref|YP_002364586.1| NADH dehydrogenase subunit 6 [Epinephelus lanceolatus] gi|215789149|gb|ACJ69598.1| NADH dehydrogenase subunit 6 [Epinephelus lanceolatus] gi|325126956|gb|ADY85989.1| NADH dehydrogenase subunit 6 [Epinephelus lanceolatus] Length = 173 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 48/121 (39%), Gaps = 4/121 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + F + I+ + V + +P + F L+ G+ + G+ F+A+I + Sbjct: 1 MCFTIICFLIC---WIVGAIAVASNPSPFFGAFGLVVVAGVGCGILVEYGSSFLALILFL 57 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +Y+G ++V F + + + ++ + + ++ + VFS Sbjct: 58 IYLGGMLVVFAYSAALAAEPYPESWLNSTVVVYMCCYAVAVMVGVSVFWHGWVGVFSGSA 117 Query: 120 E 120 + Sbjct: 118 D 118 >gi|16356979|ref|NP_443630.1|ND6_15838 NADH dehydrogenase subunit 6 [Zeus faber] gi|16267193|dbj|BAB70324.1| NADH dehydrogenase subunit 6 [Zeus faber] Length = 173 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P Y+ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 21 SNPSPYYAALGLVLVAGAGCGVLVACGGGFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 A + +IG++ + S + S Sbjct: 81 AWGGRAVFGYVVIYIGLVLGAALWAGSGWYEGSW 114 >gi|207560006|gb|ACI24599.1| NADH dehydrogenase subunit 6 [Pseudois nayaur] Length = 175 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M K LG+F G+L L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEVWVSSK-VVLGAFVTGLLMEFLMV 104 >gi|157690796|ref|YP_001488953.1| NADH dehydrogenase subunit 6 [Camelus dromedarius] gi|157394473|gb|ABV53319.1| NADH dehydrogenase subunit 6 [Camelus dromedarius] Length = 175 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +I + +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYVVFILSIIFVIGFISFSSKPSPIYGGLGLIVSGGVGCMIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G++ ++V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKTVLGAFIFGLVVEIIMVI 105 >gi|27543973|dbj|BAC54798.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus] Length = 175 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFVTGLLMEFFMV 104 >gi|28975373|gb|AAO61763.1| NADH dehydrogenase subunit 6 [Geranoaetus melanoleucus australis] gi|28975375|gb|AAO61764.1| NADH dehydrogenase subunit 6 [Geranoaetus melanoleucus melanoleucus] gi|281308332|gb|ADA58314.1| NADH dehydrogenase subunit 6 [Geranoaetus melanoleucus] Length = 172 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 46/106 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G+ + +L +I + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWRVLGYGAGMVLVLVVGVIAGGA 107 >gi|67005619|gb|AAY62418.1| NADH dehydrogenase subunit 6 [Testudo graeca] Length = 174 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y VFSL+ G+ + +G FV++I ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +V F + + G ++ + ++ S + Sbjct: 64 MVIFAYSCALAAEPYPAGWGTLDVVIYGLCYLVCVLWLMLTDYSWW 109 >gi|55583452|ref|YP_138303.1| NADH dehydrogenase subunit 6 [Kaloula pulchra] gi|46981647|gb|AAT07897.1| NADH dehydrogenase subunit 6 [Kaloula pulchra] Length = 167 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 4/103 (3%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F ++ V + +P ++ F L+ + L + G F++++ +VY+G ++V Sbjct: 2 VFELWLLVGFVAVASNPSPYFAAFGLVAGAGSGCLLLMKDGLTFLSLVLFLVYLGGMMVV 61 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + ++ P F +IG+ A L+V + Sbjct: 62 FAYSAALVAEPY----PEAWGDFWVLSYIGVYALVLVVGWLLW 100 >gi|270267362|ref|YP_003331066.1| NADH dehydrogenase subunit 6 [Vicugna vicugna] gi|213389360|gb|ACJ45799.1| NADH dehydrogenase subunit 6 [Vicugna vicugna] Length = 175 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S M +I + +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIMFVIGFISFSSKPSPIYGGLGLIVSGGVGCMIVLSYGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G++ L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKTVLGTFIFGLVVEMLMVI 105 >gi|170292913|gb|ACB12497.1| NADH dehydrogenase subunit 6 [Pseudolabrus sieboldi] Length = 173 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 8/122 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F LF ++ V + +P ++ L+ G+ + G ++++ ++Y+G Sbjct: 5 LSFLLFGL--VMGLIAVASNPSPYFAALGLVVVAGMGCGVLVSYGGPILSLVLFLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F + + AEP + F GS + + V + ++S E+S + Sbjct: 63 MLVVFAYSAAL------AAEPYPESWFSGSVAMYMGVYIFGVVLAGVPLWSGWYEVSWVP 116 Query: 126 FK 127 Sbjct: 117 AD 118 >gi|84488662|ref|YP_448801.1| NADH dehydrogenase subunit 6 [Testudo graeca] gi|67005605|gb|AAY62405.1| NADH dehydrogenase subunit 6 [Testudo graeca] Length = 174 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y VFSL+ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +V F + + AEP + L + V +S G Sbjct: 64 MVIFAYSCAL------AAEPYPGSWGTLDVVVYGLCYLICVLWLMLTDYSWWG 110 >gi|13242641|ref|NP_077656.1| EsV-1-171 [Ectocarpus siliculosus virus 1] gi|13177441|gb|AAK14585.1|AF204951_170 EsV-1-171 [Ectocarpus siliculosus virus 1] Length = 1233 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Query: 151 FILLLSMI--GAIVLMLRHRRDIKRQDIS-KQLESNPDNSI 188 IL+++++ GAI+L +++ ++ KQ S + S+ Sbjct: 6 VILIVALVVAGAILLTKHRKKNGSTEEPFQKQFSSRNEISL 46 >gi|108561428|ref|YP_626726.1| NADH dehydrogenase subunit 6 [Canis latrans] gi|91702687|gb|ABE48244.1| NADH dehydrogenase subunit 6 [Canis latrans] gi|91702715|gb|ABE48270.1| NADH dehydrogenase subunit 6 [Canis latrans] gi|189494344|gb|ACE02932.1| NADH dehydrogenase subunit 6 [Canis latrans] gi|255761441|gb|ACU32813.1| NADH dehydrogenase subunit 6 [Vulpes vulpes] Length = 175 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|50234078|ref|YP_052708.1| NADH dehydrogenase subunit 6 [Bos indicus] gi|60101836|ref|YP_209216.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|237869054|ref|YP_002907385.1| NADH dehydrogenase subunit 6 [Bos javanicus] gi|292486459|ref|YP_003541095.1| NADH dehydrogenase subunit 6 [Bos primigenius] gi|128808|sp|P03924|NU6M_BOVIN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|75053324|sp|Q71PB7|NU6M_BOSIN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|18034143|gb|AAL57372.1|AF416451_1 NADH dehydrogenase subunit 6 [Bos indicus] gi|12812|emb|CAA24006.1| unnamed protein product [Bos taurus] gi|19919704|gb|AAM08328.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|19919718|gb|AAM08341.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|20149079|gb|AAM12800.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|20149093|gb|AAM12813.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|27543917|dbj|BAC54746.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus] gi|27543931|dbj|BAC54759.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus] gi|27543945|dbj|BAC54772.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus] gi|27543987|dbj|BAC54811.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus] gi|27544001|dbj|BAC54824.1| NADH-ubiquinone oxidoreductase chain 6 [Bos taurus] gi|33321659|gb|AAQ06591.1| NADH dehydrogenase subunit 6 [Bos indicus] gi|33321673|gb|AAQ06604.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|37545837|gb|AAM95741.1| NADH dehydrogenase subunit 6 [Bos indicus] gi|37960027|gb|AAP47840.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|37960041|gb|AAP47853.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|37960055|gb|AAP47866.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|37960069|gb|AAP47879.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|42521324|gb|AAS18253.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56410906|gb|AAV88121.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56410920|gb|AAV88134.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56410934|gb|AAV88147.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56410948|gb|AAV88160.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56410962|gb|AAV88173.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56410976|gb|AAV88186.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56410990|gb|AAV88199.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411004|gb|AAV88212.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411018|gb|AAV88225.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411032|gb|AAV88238.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411046|gb|AAV88251.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411060|gb|AAV88264.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411074|gb|AAV88277.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411088|gb|AAV88290.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411102|gb|AAV88303.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411116|gb|AAV88316.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411130|gb|AAV88329.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411144|gb|AAV88342.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|56411158|gb|AAV88355.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987480|gb|AAZ16531.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987494|gb|AAZ16544.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987508|gb|AAZ16557.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987522|gb|AAZ16570.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987536|gb|AAZ16583.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987550|gb|AAZ16596.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987564|gb|AAZ16609.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987578|gb|AAZ16622.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987592|gb|AAZ16635.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987606|gb|AAZ16648.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987620|gb|AAZ16661.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987634|gb|AAZ16674.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987648|gb|AAZ16687.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987662|gb|AAZ16700.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987676|gb|AAZ16713.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987690|gb|AAZ16726.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987704|gb|AAZ16739.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987718|gb|AAZ16752.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987732|gb|AAZ16765.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987746|gb|AAZ16778.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987760|gb|AAZ16791.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987774|gb|AAZ16804.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987788|gb|AAZ16817.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987802|gb|AAZ16830.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987816|gb|AAZ16843.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987830|gb|AAZ16856.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987844|gb|AAZ16869.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987858|gb|AAZ16882.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987872|gb|AAZ16895.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987886|gb|AAZ16908.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987900|gb|AAZ16921.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987914|gb|AAZ16934.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987928|gb|AAZ16947.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987942|gb|AAZ16960.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987956|gb|AAZ16973.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987970|gb|AAZ16986.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987984|gb|AAZ16999.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70987998|gb|AAZ17012.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70988012|gb|AAZ17025.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70988026|gb|AAZ17038.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70988040|gb|AAZ17051.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70988054|gb|AAZ17064.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70988068|gb|AAZ17077.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70988082|gb|AAZ17090.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70988096|gb|AAZ17103.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70988110|gb|AAZ17116.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70988124|gb|AAZ17129.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|70988138|gb|AAZ17142.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778031|gb|ABV70216.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778045|gb|ABV70229.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778059|gb|ABV70242.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778073|gb|ABV70255.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778087|gb|ABV70268.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778101|gb|ABV70281.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778115|gb|ABV70294.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778129|gb|ABV70307.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778143|gb|ABV70320.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778157|gb|ABV70333.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778171|gb|ABV70346.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778185|gb|ABV70359.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778199|gb|ABV70372.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778213|gb|ABV70385.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778227|gb|ABV70398.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778241|gb|ABV70411.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778269|gb|ABV70437.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778283|gb|ABV70450.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778297|gb|ABV70463.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778311|gb|ABV70476.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778325|gb|ABV70489.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778339|gb|ABV70502.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778353|gb|ABV70515.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778367|gb|ABV70528.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778381|gb|ABV70541.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778395|gb|ABV70554.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778409|gb|ABV70567.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778423|gb|ABV70580.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778437|gb|ABV70593.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778451|gb|ABV70606.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778465|gb|ABV70619.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778479|gb|ABV70632.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778493|gb|ABV70645.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778507|gb|ABV70658.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778521|gb|ABV70671.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778535|gb|ABV70684.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778549|gb|ABV70697.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778563|gb|ABV70710.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778577|gb|ABV70723.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778591|gb|ABV70736.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778605|gb|ABV70749.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778619|gb|ABV70762.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778633|gb|ABV70775.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778647|gb|ABV70788.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778661|gb|ABV70801.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778675|gb|ABV70814.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778689|gb|ABV70827.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778703|gb|ABV70840.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778717|gb|ABV70853.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778731|gb|ABV70866.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778745|gb|ABV70879.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778759|gb|ABV70892.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778773|gb|ABV70905.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|157778801|gb|ABV70931.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|229501226|gb|ACQ73760.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|229501240|gb|ACQ73773.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|229501254|gb|ACQ73786.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|229501268|gb|ACQ73799.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|229501282|gb|ACQ73812.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|229501296|gb|ACQ73825.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|229501310|gb|ACQ73838.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|229501324|gb|ACQ73851.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|229501338|gb|ACQ73864.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|233142556|gb|ACQ91133.1| NADH dehydrogenase subunit 6 [Bos javanicus] gi|237780773|gb|ACR19418.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|237780787|gb|ACR19431.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|270486458|gb|ACZ83022.1| NADH dehydrogenase subunit 6 [Bos indicus] gi|291463834|gb|ADE05538.1| NADH dehydrogenase subunit 6 [Bos primigenius] gi|294679603|gb|ADF29608.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959828|gb|ADF49338.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959842|gb|ADF49351.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959856|gb|ADF49364.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959870|gb|ADF49377.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959884|gb|ADF49390.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959898|gb|ADF49403.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959912|gb|ADF49416.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959926|gb|ADF49429.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959940|gb|ADF49442.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959954|gb|ADF49455.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959968|gb|ADF49468.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959982|gb|ADF49481.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294959996|gb|ADF49494.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|294960024|gb|ADF49520.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977279|gb|ADN11786.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977293|gb|ADN11799.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977307|gb|ADN11812.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977321|gb|ADN11825.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977335|gb|ADN11838.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977349|gb|ADN11851.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977363|gb|ADN11864.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977377|gb|ADN11877.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977391|gb|ADN11890.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977405|gb|ADN11903.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977419|gb|ADN11916.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977433|gb|ADN11929.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977447|gb|ADN11942.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977461|gb|ADN11955.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977475|gb|ADN11968.1| NADH dehydrogenase subunit 6 [Bos taurus] gi|306977489|gb|ADN11981.1| NADH dehydrogenase subunit 6 [Bos taurus] Length = 175 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFVTGLLMEFFMV 104 >gi|257062357|gb|ACV40194.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|25057432|ref|NP_740229.1| NADH dehydrogenase subunit 6 [Polypterus senegalus senegalus] gi|25006462|dbj|BAC23956.1| NADH dehydrogenase subunit 6 [Polypterus senegalus senegalus] Length = 167 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 2/104 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS + ++S V + +P ++ F L+ G+ + G F+++I ++Y+G Sbjct: 2 VLMVVFSVIFLVSLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSVILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKK--RGFLGSFFIGILAAELIV 107 ++V F + + A + LG + I+ + V Sbjct: 62 MLVVFAYSAALAAEPYPPAWGSWEVFSYVLGYMVLVIMVWAVFV 105 >gi|300743740|ref|ZP_07072760.1| conserved hypothetical protein [Rothia dentocariosa M567] gi|300380101|gb|EFJ76664.1| conserved hypothetical protein [Rothia dentocariosa M567] Length = 568 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 20/130 (15%) Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 V AV++ L ++ + + +K +L +F++ + A ++ F + A Sbjct: 3 VTAVLILILAVLHLARYKQKPKRLLRKIEWLRTFYVWLGALAILGGTWAFFLPIALNSGF 62 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR-----DIKRQDIS 177 G + + ++Y +G IL G I L HRR D QD + Sbjct: 63 NKDDDGPALRQL--LIY--------ATGGIL-----GVITLGETHRRNNLEKDKNNQDHT 107 Query: 178 KQLESNPDNS 187 +Q+ + N Sbjct: 108 RQVHAERRNR 117 >gi|226463944|ref|YP_002727999.1| NADH dehydrogenase subunit 6 [Chamaeleo dilepis] gi|124055048|gb|ABM90420.1| NADH dehydrogenase subunit 6 [Chamaeleo dilepis] Length = 170 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 2/135 (1%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 V + +P + SL A + AG+ + + F++++ ++VY+G ++V F++ + M D Sbjct: 15 GVASNPSPYFGAVSLALASIFGAGIVVGFSSTFISLVLMLVYLGGMLVVFVYSVAM-SSD 73 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT 140 + + FL + L C +F S ++ G V+ G VL Sbjct: 74 MYPEAWGSRSVFLYIVGFVVYLFCLWWCIGGEWLFDGSVIGSAILLDGVTVDLGGVVLLY 133 Query: 141 QY-AYPLEISGFILL 154 + I G +LL Sbjct: 134 SFGGVCFLILGVMLL 148 >gi|326535921|ref|YP_004300366.1| NADH dehydrogenase subunit 6 [Crocodylus moreletii] gi|312844614|gb|ADR03180.1| NADH dehydrogenase subunit 6 [Crocodylus moreletii] Length = 175 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 41/73 (56%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G Sbjct: 3 ITFFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLD 78 ++V F F + D Sbjct: 63 LLVVFAFCVGFTD 75 >gi|119360425|ref|YP_913547.1| NADH dehydrogenase subunit 6 [Pungtungia herzi] gi|119225245|dbj|BAF41608.1| NADH dehydrogenase subunit 6 [Pungtungia herzi] Length = 173 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFILLVAL-VVGLIAVASNPTPYFAALGLVVAAGVGCGVLIGCGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + + A R G++ ++ +G++ A + + Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLTYLVGVILAAGLFWGGWY 110 >gi|19032390|gb|AAL83411.1| NADH dehydrogenase subunit 6 [Trichosurus vulpecula] Length = 167 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 46/115 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +PIY SL+ + + + + L F+ ++ +VY Sbjct: 1 MKMMVVFLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLENTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M + + F F + + V +A Sbjct: 61 LGGMLVVFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEVEVDTA 115 >gi|155624795|gb|ABU24808.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K L F G+LA LI C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLIAC 105 >gi|281308330|gb|ADA58313.1| NADH dehydrogenase subunit 6 [Geranoaetus melanoleucus] Length = 172 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 46/106 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G+ + +L +I + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWRVLGYGAGMVLVLVVGVIAGGA 107 >gi|221145643|ref|YP_002519922.1| NADH dehydrogenase subunit 6 [Amanses scopas] gi|219806961|dbj|BAH10328.1| NADH dehydrogenase subunit 6 [Amanses scopas] Length = 173 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P ++ L+ G+ L G F++++ ++Y+G ++V Sbjct: 7 LFLLGLVVGLLAVASNPSPYFAALGLVVVAGLGCGVLLGHGGCFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 F + + AEP + G + +L +V + S E S + + Sbjct: 67 FAYSAAL------AAEPYPESWGSGPVVVALLWYFFMVGVAAAFFRSGWYEYSWVPADES 120 Query: 130 NVENIGK 136 V +G+ Sbjct: 121 GVFAMGR 127 >gi|124055188|gb|ABM89797.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon] Length = 169 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 V + +P + SL A V AG+ L + F++++ ++VY+G ++V F++ + M Sbjct: 15 GVASNPSPYFGGVSLALASVFGAGVMAGLSSTFISLVLMLVYLGGMLVVFIYSVAMSSDM 74 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 A + F+G L + Sbjct: 75 YPEAWGNRSVFLYVVGFLGYLFCLWWYMGGKW 106 >gi|76009078|gb|ABA39001.1| NADH dehydrogenase subunit 6 [Leucopternis kuhli] gi|281308356|gb|ADA58326.1| NADH dehydrogenase subunit 6 [Leucopternis kuhli] Length = 172 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|327492553|ref|YP_004347455.1| NADH dehydrogenase subunit 6 [Arothron hispidus] gi|327492581|ref|YP_004347481.1| NADH dehydrogenase subunit 6 [Arothron meleagris] gi|327392530|dbj|BAK09962.1| NADH dehydrogenase subunit 6 [Arothron hispidus] gi|327392544|dbj|BAK09975.1| NADH dehydrogenase subunit 6 [Arothron meleagris] Length = 173 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 43/108 (39%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P + SL+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + ++GI+A ++ F +S Sbjct: 67 FAYSAALAAEPYPETLGSWPVLASMLMYLGIVALVFVLFLGGFGEYSW 114 >gi|195933691|ref|YP_002117995.1| NADH dehydrogenase subunit 6 [Echinococcus ortleppi] gi|145207885|dbj|BAF56544.1| NADH dehydrogenase subunit 6 [Echinococcus ortleppi] Length = 151 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+++ F + + T Y V ++ A + + +++ G + +++ + Sbjct: 1 MLLEVFIAMYFCVLMLFCF----TSHCIYYCVLLVVNALLASCICYVVYGFSWYSLLLCL 56 Query: 61 VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVG V V F+F+ + + + + G SF G+L L+ A + FS Sbjct: 57 VYVGGVYVLFIFVSVFGPNSSFVLYRSAWELGLCVSFGFGLLICGLVYYALIDVEFSG 114 >gi|327555451|gb|AEB01068.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] gi|327555465|gb|AEB01081.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] Length = 175 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 43/99 (43%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G Sbjct: 3 ITFFLLCCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104 ++V F F + D L L Sbjct: 63 LLVVFAFCVGFTDDKYCEFWGAGGSKVLACVCGVGLGIG 101 >gi|9801582|ref|NP_063912.1| NADH dehydrogenase subunit 6 [Lama pacos] gi|9558355|emb|CAC00513.1| NADH6 [Lama pacos] Length = 175 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S M +I + +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIMFVIGFISFSSKPSPIYGGLGLIVSGGVGCMIVLSYGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + + + + LG+F G++ L+V Sbjct: 61 LGGMMVVFGYT-TAMPTEQYPDVWVSNKTVLGAFTFGLVVEMLMVV 105 >gi|76009076|gb|ABA39000.1| NADH dehydrogenase subunit 6 [Leucopternis semiplumbeus] Length = 172 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|14039332|gb|AAK53179.1| NADH dehydrogenase subunit 6 [Galaxias brevipinnis] Length = 173 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + P ++ L+ A G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPAPYFAALGLVVAAGVGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78 Query: 82 EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 + R G++ ++F+G+L + + Sbjct: 79 PESWGDRSVLGYVLAYFVGVLVTAGLFWGGWY 110 >gi|188039038|ref|YP_001905920.1| NADH dehydrogenase subunit 6 [Antedon mediterranea] gi|183014005|emb|CAL50597.1| NADH dehydrogenase subunit 6 [Antedon mediterranea] Length = 163 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 42/90 (46%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L + + S LV +P +S L+ +++ L +G F+A+I L+VY+G +++ Sbjct: 4 FLINITLLFGSSLVFYSISPYFSALGLVIVSISSCFLLSKIGISFLALILLLVYMGGMLI 63 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 F++ + + + L F+ Sbjct: 64 VFIYSSAITNDRFPTISNINEITILSIIFL 93 >gi|295065507|ref|YP_003587277.1| NADH dehydrogenase subunit 6 [Bison bonasus] gi|294679589|gb|ADF29595.1| NADH dehydrogenase subunit 6 [Bison bonasus] gi|311788325|gb|ADQ12703.1| NADH dehydrogenase subunit 6 [Bison bonasus] Length = 175 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVVFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFVTGLLMEFFMV 104 >gi|187373165|ref|YP_001876480.1| NADH dehydrogenase subunit 6 [Mus terricolor] gi|164370739|gb|ABY51647.1| NADH dehydrogenase subunit 6 [Mus terricolor] Length = 172 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 2/102 (1%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FVLSSLFLVGCLGLALKPSPIYGGLGLIISGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +F E E + SF + + E+ V Sbjct: 66 --VFGYTTAMATEEYPETWGSNWLILSFLVLGVVMEIFVIYM 105 >gi|84488733|ref|YP_448763.1| NADH dehydrogenase subunit 6 [Neogymnocrinus richeri] gi|66731067|gb|AAY51821.1| NADH dehydrogenase subunit 6 [Neogymnocrinus richeri] Length = 164 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+ + S V +P YS L ++ + + A F+A+I L+VY+G ++V Sbjct: 4 YISVITLLFGSSFVFYSLSPYYSALGLAIVSISGCLILTHISASFLALILLLVYMGGMLV 63 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F++ L D SFFI + L + + S + +G Sbjct: 64 VFVYS-SALSTDRFPYISNTAEIISLSFFIIVWTTILYNNTNWNTTNTNFNLTSLVDIEG 122 >gi|289183243|ref|YP_003457224.1| NADH dehydrogenase subunit 6 [Cryptopsaras couesii] gi|288909035|dbj|BAI77272.1| NADH dehydrogenase subunit 6 [Cryptopsaras couesii] Length = 173 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 36/98 (36%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ G+ GA F++++ +VY+G ++V F + + Sbjct: 17 ICVASNPSPYFAALGLVVVAGLGCGVLAYYGASFLSLVLFLVYLGGMLVVFAYSAALAAE 76 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 A + ++ + + F+ Sbjct: 77 PYPEAFGSRNVSLPAGAYLWGSLLSFFLLLDGWDEFAW 114 >gi|32307235|gb|AAP79105.1| NADH dehydrogenase subunit 6 [Uropsilus soricipes] Length = 175 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 14/160 (8%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + S + ++S + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MVTYIELILSTILVLSFVGFCSKPSPIYGGLGLIVSGGVGCGVVLNYGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF------MVFS 116 +G ++V +F E E + + AEL+ +V + Sbjct: 61 LGGMLV--VFGYTTAMAMEEYPEVWTSNYTVLGLLVSGFVAELLFMGYLASDEKLEIVLN 118 Query: 117 AEGELSRLVFKGNNV-----ENIGK-VLYTQYAYPLEISG 150 G+ +++ + E +G LY+ + + ++G Sbjct: 119 FNGQGDWVIYDTGDSGFFSEEAMGIAALYSYGYWLVIVTG 158 >gi|327492567|ref|YP_004347468.1| NADH dehydrogenase subunit 6 [Canthigaster valentini] gi|327392278|dbj|BAK09728.1| NADH dehydrogenase subunit 6 [Canthigaster valentini] Length = 173 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 39/94 (41%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P + SL+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 21 SNPSPYFGALSLVAVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 S +IG+++ ++ + +S Sbjct: 81 TLGSWPVLASMSMYIGVVSLVFVLFLGGWGEYSW 114 >gi|138892609|ref|YP_001127589.1| NADH dehydrogenase subunit 6 [Mauremys mutica] gi|90576894|gb|ABD95490.1| NADH dehydrogenase subunit 6 [Mauremys mutica] Length = 174 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 49/99 (49%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVGMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 +V F + ++ V + F G +++ I+ + Sbjct: 64 LVIFAYSSALMAEPFPVGWLSLEGVFYGLYYLFIIVVFM 102 >gi|326535963|ref|YP_004300405.1| NADH dehydrogenase subunit 6 [Crocodylus johnsoni] gi|312227691|gb|ADQ52682.1| NADH dehydrogenase subunit 6 [Crocodylus johnsoni] Length = 175 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 40/73 (54%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L + + S LV + Y V SL+FA + +GL + G F+ ++ L++Y+G Sbjct: 3 ITFFLLCCLMMASVVLVASGVAIHYGVVSLLFAAMFGSGLLAMGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLD 78 ++V F F + D Sbjct: 63 LLVVFAFCVGFTD 75 >gi|225690866|gb|ACO06117.1| NADH dehydrogenase subunit 6 [Pseudopleuronectes yokohamae] Length = 173 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFVMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGILVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + S + + V + + + E S + Sbjct: 62 GMLVVFAYSAAL------AAEPYPESWGSWSVMVYGVVYVAGVVVVSALFWGGWYESSWV 115 Query: 125 VFK 127 + Sbjct: 116 LVD 118 >gi|294960010|gb|ADF49507.1| NADH dehydrogenase subunit 6 [Bos taurus] Length = 175 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 3/107 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ ++F + S + ++ + +PIY LI + G+ L G F+ ++ + Sbjct: 1 MMLYTVF--ILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFL 58 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +Y+G ++V F + M + LG+F G+L +V Sbjct: 59 IYLGGMMVVFGYTTAMATEQYPEI-WLSNKAVLGAFVTGLLMEFFMV 104 >gi|126792916|gb|ABO27314.1| NADH dehydrogenase subunit 6 [Aratinga solstitialis] Length = 170 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 39/70 (55%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +++S LV + +P Y V L+F + G + LGA FV+++ +VY+G + Sbjct: 4 FXVFLGTSFVLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGASFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|5835313|ref|NP_007353.1|ND6_11617 NADH dehydrogenase subunit 6 [Arbacia lixula] gi|1321885|emb|CAA56606.1| NADH dehydrogenase subunit 6 [Arbacia lixula] Length = 162 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 12/168 (7%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + YL ++ S LV +P YS L+ ++ L+G F+A++ L+VY+G Sbjct: 1 MIIYLSLVCLLVGSTLVFYSLSPYYSALGLVVVSISGCISLSLIGGSFIALVLLLVYMGG 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F + + +R S ++ + F+ F E S Sbjct: 61 MLVVFAY----------SSAISAERFPSVSNISEVIGLSAFFSSWVFLSFDNLNETSNCS 110 Query: 126 FK-GNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 +N +G + Y + + + FIL + ++GA+++ +I Sbjct: 111 STIISNEGVLGSSIFYNDGSVLVVLGVFILFIVLVGALIISRGAENNI 158 >gi|2459603|gb|AAB71753.1| NADH dehydrogenase subunit 6 [Cacomantis sepulcralis] Length = 156 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V +P Y V L+ A V G L LG FV+++ +VY+G +V Sbjct: 3 FLGVCFVLGGLAVAXNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVWFMVYLGGXLVV 62 Query: 70 FLFIIMMLDIDIEVAEPRKK 89 F++ + + A + Sbjct: 63 FVYSVSLAADPFSGAWGDWR 82 >gi|310007463|gb|ADP00773.1| NADH dehydrogenase subunit 6 [Dicentrarchus punctatus] Length = 172 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 4/157 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ F+L F I+S V +P Y F L+ + + G F+A+I ++ Sbjct: 1 MMTYVACFFLGGF--ILSMVAVACNPSPFYGAFGLVAVAGFGCAVVVGSGGTFLALILVM 58 Query: 61 VYVGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV-FSAE 118 +YVGA++V F++ + D E G G + +G++ A + V + Sbjct: 59 IYVGAMLVVFVYSAALAADRYPESWGTGGVAGQAGGYLLGLIVAFSFFWKEEYGVSWDYG 118 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLL 155 G + + ++ + + + + +G +LL Sbjct: 119 GGVEEGASQRGDISGVSWMYSSGGPLLVISAGALLLT 155 >gi|257062405|gb|ACV40218.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|126792893|gb|ABO27302.1| NADH dehydrogenase subunit 6 [Ara ararauna] Length = 170 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 40/72 (55%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F I++S LV + +P Y V L+F + G + LG+ FV+++ +VY+G Sbjct: 2 TYFLVFLGVSFILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGSSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|126792885|gb|ABO27297.1| NADH dehydrogenase subunit 6 [Anodorhynchus hyacinthinus] gi|126792888|gb|ABO27299.1| NADH dehydrogenase subunit 6 [Anodorhynchus hyacinthinus] Length = 170 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +++S LV + +P Y V LIF V G LGA FV+++ +VY+G + Sbjct: 4 FLVFLGISFVLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|322823913|gb|EFZ29513.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 885 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 30/156 (19%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + S+ F+ + + + ++ R P SV N G+ L L F+ ++ Sbjct: 654 LSSVVFFFAITVFLRKTLGTISCRAPWRSVSY--TTMFNLDGIMLTLFGYFMLVLL---- 707 Query: 63 VGAVIVFFLFIIMMLDIDI---------------EVAEPRKKRGFLGSFFIGILAAELIV 107 F F ++ E R + + IGI A + Sbjct: 708 -----ATFAFALVYSRWHTREEIEAHVQEFQALPEFWTFRNTTKVVAVYVIGIGQALCLG 762 Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143 ++ + + IG VLY + Sbjct: 763 YLMKLWIYRTSNVVWNWEASPS----IGAVLYMTFL 794 >gi|226453486|ref|YP_002791053.1| NADH dehydrogenase subunit 6 [Mus musculus castaneus] gi|118200793|gb|ABK79260.1| NADH dehydrogenase subunit 6 [Mus musculus castaneus] Length = 172 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + +PIY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FVLSSLFLVGCLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + M + LG +G++ ++ N+ Sbjct: 66 VFGYTTAMATEEYPETWG-SNWLILGFLVLGVIMEVFLIYVLNY 108 >gi|49146247|ref|YP_026115.1| NADH dehydrogenase subunit 6 [Macaca mulatta] gi|47156221|gb|AAT11997.1| NADH dehydrogenase subunit 6 [Macaca mulatta] Length = 175 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 2/107 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F S + ++ + +PIY +LI + V + L G ++ ++ +VY Sbjct: 1 MTYILF-ALSVLLVMGFVGFSSKPSPIYGGLALIVSGVIGCVIVLSCGGAYMGLMMFLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + + I+ LG +G++ ++V Sbjct: 60 LGGMMVVFGYT-TAMAIEEYPETWGSGFEVLGGLLVGLMMEVMLVLW 105 >gi|257062397|gb|ACV40214.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLMLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|311788449|gb|ADQ12835.1| NADH dehydrogenase subunit 6 [Lepidogalaxias salamandroides] Length = 168 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF + ++ V + +P Y V +L+F A + + G F++++ ++Y+G ++V Sbjct: 8 LFISLLVVGFIGVASNPSPYYGVLNLVFTAGFGAAVIVSYGGSFLSLVLFLIYLGGMLVV 67 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 F + + + E K + S G +IV Sbjct: 68 FAYSVALYT------ESYPKAWGMWSVVYGFFVLLVIV 99 >gi|5835083|ref|NP_008164.1|ND6_10513 NADH dehydrogenase subunit 6 [Patiria pectinifera] gi|6225783|sp|Q33817|NU6M_ASTPE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1060989|dbj|BAA03876.1| NADH-dehydrogenase subunit 6 [Patiria pectinifera] Length = 162 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + FY + + S LV +P Y L+ ++ L LLG F+A++ +++YVG Sbjct: 1 MIFYTVLVLMFLGSTLVFYSLSPYYGALGLVLVALSGCLLCSLLGFSFIALVLILIYVGG 60 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + L S I Sbjct: 61 MLVVFVYSTAISAERYPSVSNFNEILVLSSLVI 93 >gi|323489600|ref|ZP_08094827.1| DNA translocase ftsK (DNA translocase SpoIIIE) [Planococcus donghaensis MPA1U2] gi|323396731|gb|EGA89550.1| DNA translocase ftsK (DNA translocase SpoIIIE) [Planococcus donghaensis MPA1U2] Length = 782 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 35/179 (19%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + + + + + L++ I +F I ++ FL+ ++++ + VY Sbjct: 34 MPMIAYEVIGLIMLGIAVLMMFQLGVIGKMFYNIAEYLAGYMAFLI----PLSLVFVAVY 89 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 V M+ + + + G L +L LI A++ + ++ ++ Sbjct: 90 V------------MVKREWPKPKMKVAFGSLFVLIGILLICHLIWAANSILPITSSNVIA 137 Query: 123 RLVFKGNNVENI-------GKVLYTQYAYPLE----------ISGFILLLSMIGAIVLM 164 + I G + + Y L I ILL IGAI+L Sbjct: 138 ETIRTTKMTGTIWNSYLATGGGILGAFLYALLHVLFDTAGTWIVAIILLS--IGAIILT 194 >gi|281308302|gb|ADA58299.1| NADH dehydrogenase subunit 6 [Buteo polyosoma] gi|281308304|gb|ADA58300.1| NADH dehydrogenase subunit 6 [Buteo polyosoma] Length = 172 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 46/106 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++V F++ + + A + G+ + +L +I + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWRVLGYGAGMVLVLVVGVIAGGA 107 >gi|28975377|gb|AAO61765.1| NADH dehydrogenase subunit 6 [Busarellus nigricollis] gi|28975379|gb|AAO61766.1| NADH dehydrogenase subunit 6 [Busarellus nigricollis leucocephalus] Length = 173 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L ++ V + +P Y V L+ V G + LG FVA++ +VY Sbjct: 1 MMVYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +G ++V F++ + + A + Sbjct: 61 LGGMLVVFVYSVCLAADPFPEAWGDWR 87 >gi|327199738|gb|AEA36004.1| NADH dehydrogenase subunit 6 [Cacatua pastinator butleri] Length = 172 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++++ V + +P Y V L+ V G + LG F++++ +VY+G Sbjct: 2 AYFVXFLGVSFVLAALAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVSFMSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F++ + + A + +G +L L + Sbjct: 62 GMLVVFVYSVSLAADPFPQAWGDWR--AVGYAVGFVLVVGLGFAVGGW 107 >gi|311788502|gb|ADQ12884.1| NADH dehydrogenase subunit 6 [Protosalanx chinensis] Length = 173 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + P ++ L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLAGLVLGLVAVASNPAPYFAALGLVVAAGAGCGILVGHGGPFLSLVLFLIYLGGMLVV 66 Query: 70 FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + E R G++ +F+ ++ + Sbjct: 67 FAYSAALAAEPYPETWGDRSVLGYVVGYFLAVVVMAGWFWGGWY 110 >gi|29569566|gb|AAO85251.1| NADH dehydrogenase subunit 6 [Buteo albicaudatus hypospodius] gi|281308244|gb|ADA58270.1| NADH dehydrogenase subunit 6 [Buteo albicaudatus] Length = 172 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|71658118|ref|YP_272013.1| NADH dehydrogenase subunit 6 [Plesiobatis daviesi] gi|49066393|gb|AAT49288.1| NADH dehydrogenase subunit 6 [Plesiobatis daviesi] Length = 173 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 42/110 (38%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + ++ V + +P ++ L+ + GL + G+ F+++I ++Y+G ++V Sbjct: 7 ILMVSFVLGLVAVASNPSPYFAALGLVISAGVGCGLLVGFGSSFLSLILFLIYLGGMMVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 F + + + + GIL + ++ G Sbjct: 67 FAYTAALAAEPYPESWGDWSVLAYVVGYFGILFGVGLNFVVDWSWGGWVG 116 >gi|55583356|ref|YP_138264.1| NADH dehydrogenase subunit 6 [Bombina bombina] gi|46981591|gb|AAT07845.1| NADH dehydrogenase subunit 6 [Bombina bombina] Length = 169 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 6/105 (5%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F ++ V + +P Y+ L+ A + + GA F++++ ++Y+G ++V Sbjct: 7 FFMVGLVLGLVAVASNPSPYYAALGLVVAAGAGCCVIVSFGASFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 F + + AEP + S +L L+V +MV Sbjct: 67 FAYSAALT------AEPYPEAWGSWSVVGYVLVYLLLVTGGCYMV 105 >gi|284794727|ref|YP_003412081.1| NADH dehydrogenase subunit 6 [Raiamas senegalensis] gi|284507281|dbj|BAI67707.1| NADH dehydrogenase subunit-6 [Raiamas senegalensis] Length = 173 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 1/112 (0%) Query: 7 FFYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F +A++ + V P + L+ G+ + G F+++I ++Y+G Sbjct: 3 LYSCFLLVALVMGLIAVASNPTPYFGALGLVMVAGVGCGILVSCGGPFLSLILFLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + A + S ++ ++ +V + S Sbjct: 63 MLVVFAYSTALAAESYPEAWGSRSVAMYASMYLFGVSMVALVFWGGWYEGSW 114 >gi|219524130|ref|YP_002456280.1| NADH dehydrogenase subunit 6 [Manouria impressa] gi|149193526|gb|ABR21226.1| NADH dehydrogenase subunit 6 [Manouria impressa] Length = 174 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 46/106 (43%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y VFSL+ + G+ + +G FV+++ +VY+G + Sbjct: 4 FMFLFGFCFVFWMIGVSCSSSPYYGVFSLVLGAASGCGVLVGMGGSFVSLVLFLVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +V F + + V ++ ++ ++ S + Sbjct: 64 LVIFAYSSALAAEPYPVGWGGLDAVIYWLCYMIVVMWFMMADYSWW 109 >gi|165932463|ref|YP_001650747.1| NADH dehydrogenase subunit 6 [Macroramphosus scolopax] gi|154758874|dbj|BAF75014.1| NADH dehydrogenase subunit 6 [Macroramphosus scolopax] Length = 173 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ G+ + G F+++I ++Y+G ++V F + + Sbjct: 17 IAVASNPSPYFAALGLVIVAGVGCGILVWHGGPFLSLILFLIYLGGMLVVFAYSAAL--- 73 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 AEP + S + ++ + V + M + E S + Sbjct: 74 ---AAEPYPESWGSRSVAVSMVGYMVGVTLISGMFWGGWHEGSWVPVD 118 >gi|91702463|gb|ABE48036.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702575|gb|ABE48140.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065611|gb|ABY79937.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065835|gb|ABY80145.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066003|gb|ABY80301.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066171|gb|ABY80457.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493742|gb|ACE02373.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493756|gb|ACE02386.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493770|gb|ACE02399.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493784|gb|ACE02412.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493798|gb|ACE02425.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493980|gb|ACE02594.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493994|gb|ACE02607.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494106|gb|ACE02711.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494134|gb|ACE02737.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494246|gb|ACE02841.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] Length = 175 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|17737329|ref|NP_008482.4|ND6_15041 NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|108561311|ref|YP_626739.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|167716876|ref|YP_001686722.1| NADH dehydrogenase subunit 6 [Canis lupus chanco] gi|207849013|ref|YP_002221511.1| NADH dehydrogenase subunit 6 [Canis lupus laniger] gi|14917021|sp|Q9ZZ56|NU6M_CANFA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|122064631|sp|Q1HK79|NU6M_CANLU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|7534310|gb|AAD04774.2| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301817|gb|AAT74137.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301831|gb|AAT74150.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301845|gb|AAT74163.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301859|gb|AAT74176.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301873|gb|AAT74189.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301887|gb|AAT74202.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301901|gb|AAT74215.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301915|gb|AAT74228.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301929|gb|AAT74241.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301943|gb|AAT74254.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301957|gb|AAT74267.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301971|gb|AAT74280.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301985|gb|AAT74293.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50301999|gb|AAT74306.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50302013|gb|AAT74319.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50302027|gb|AAT74332.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50302041|gb|AAT74345.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50302055|gb|AAT74358.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|50302069|gb|AAT74371.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|51872065|gb|AAU12158.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702407|gb|ABE47984.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702421|gb|ABE47997.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702435|gb|ABE48010.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702449|gb|ABE48023.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702477|gb|ABE48049.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702491|gb|ABE48062.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702505|gb|ABE48075.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702519|gb|ABE48088.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702533|gb|ABE48101.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702547|gb|ABE48114.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702561|gb|ABE48127.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702589|gb|ABE48153.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|91702617|gb|ABE48179.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|91702631|gb|ABE48192.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|91702645|gb|ABE48205.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|91702659|gb|ABE48218.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|91702673|gb|ABE48231.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|166065527|gb|ABY79859.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065541|gb|ABY79872.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065555|gb|ABY79885.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065569|gb|ABY79898.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065583|gb|ABY79911.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065597|gb|ABY79924.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065625|gb|ABY79950.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065639|gb|ABY79963.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065653|gb|ABY79976.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065667|gb|ABY79989.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065681|gb|ABY80002.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065695|gb|ABY80015.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065723|gb|ABY80041.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065737|gb|ABY80054.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065751|gb|ABY80067.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065779|gb|ABY80093.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065793|gb|ABY80106.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065807|gb|ABY80119.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065821|gb|ABY80132.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065849|gb|ABY80158.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065863|gb|ABY80171.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065877|gb|ABY80184.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065891|gb|ABY80197.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065905|gb|ABY80210.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065919|gb|ABY80223.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065933|gb|ABY80236.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065947|gb|ABY80249.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065961|gb|ABY80262.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065975|gb|ABY80275.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166065989|gb|ABY80288.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066017|gb|ABY80314.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066031|gb|ABY80327.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066045|gb|ABY80340.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066059|gb|ABY80353.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066073|gb|ABY80366.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066087|gb|ABY80379.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066101|gb|ABY80392.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066115|gb|ABY80405.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066129|gb|ABY80418.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066143|gb|ABY80431.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066157|gb|ABY80444.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066185|gb|ABY80470.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066199|gb|ABY80483.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066213|gb|ABY80496.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066227|gb|ABY80509.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066241|gb|ABY80522.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066255|gb|ABY80535.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066269|gb|ABY80548.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066283|gb|ABY80561.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066297|gb|ABY80574.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066311|gb|ABY80587.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066325|gb|ABY80600.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066339|gb|ABY80613.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066353|gb|ABY80626.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066367|gb|ABY80639.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066381|gb|ABY80652.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066395|gb|ABY80665.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|166066409|gb|ABY80678.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|167030929|gb|ABZ05796.1| NADH dehydrogenase subunit 6 [Canis lupus chanco] gi|189492230|gb|ACE00969.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492244|gb|ACE00982.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492258|gb|ACE00995.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492272|gb|ACE01008.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492286|gb|ACE01021.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492300|gb|ACE01034.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492314|gb|ACE01047.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492328|gb|ACE01060.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492342|gb|ACE01073.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492356|gb|ACE01086.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492370|gb|ACE01099.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492384|gb|ACE01112.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492412|gb|ACE01138.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492426|gb|ACE01151.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492440|gb|ACE01164.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492454|gb|ACE01177.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492468|gb|ACE01190.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492482|gb|ACE01203.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492496|gb|ACE01216.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492510|gb|ACE01229.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492524|gb|ACE01242.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492538|gb|ACE01255.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492552|gb|ACE01268.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492566|gb|ACE01281.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492580|gb|ACE01294.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492608|gb|ACE01320.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492622|gb|ACE01333.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492650|gb|ACE01359.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492678|gb|ACE01385.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492692|gb|ACE01398.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492706|gb|ACE01411.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492720|gb|ACE01424.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492734|gb|ACE01437.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492748|gb|ACE01450.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492762|gb|ACE01463.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492776|gb|ACE01476.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492804|gb|ACE01502.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492818|gb|ACE01515.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492832|gb|ACE01528.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492846|gb|ACE01541.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492860|gb|ACE01554.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492874|gb|ACE01567.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492888|gb|ACE01580.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492902|gb|ACE01593.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492916|gb|ACE01606.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492930|gb|ACE01619.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492944|gb|ACE01632.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492972|gb|ACE01658.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189492986|gb|ACE01671.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493000|gb|ACE01684.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493014|gb|ACE01697.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493028|gb|ACE01710.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493042|gb|ACE01723.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493056|gb|ACE01736.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493070|gb|ACE01749.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493084|gb|ACE01762.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493098|gb|ACE01775.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493112|gb|ACE01788.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493126|gb|ACE01801.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493140|gb|ACE01814.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493154|gb|ACE01827.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493168|gb|ACE01840.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493182|gb|ACE01853.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493196|gb|ACE01866.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493210|gb|ACE01879.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493224|gb|ACE01892.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493238|gb|ACE01905.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493252|gb|ACE01918.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493266|gb|ACE01931.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493280|gb|ACE01944.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493294|gb|ACE01957.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493308|gb|ACE01970.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493322|gb|ACE01983.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493336|gb|ACE01996.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493350|gb|ACE02009.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493364|gb|ACE02022.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493378|gb|ACE02035.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493392|gb|ACE02048.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493406|gb|ACE02061.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493420|gb|ACE02074.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493434|gb|ACE02087.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493448|gb|ACE02100.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493462|gb|ACE02113.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493476|gb|ACE02126.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493490|gb|ACE02139.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493504|gb|ACE02152.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493518|gb|ACE02165.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493532|gb|ACE02178.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493546|gb|ACE02191.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493560|gb|ACE02204.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493574|gb|ACE02217.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493588|gb|ACE02230.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493602|gb|ACE02243.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493616|gb|ACE02256.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493630|gb|ACE02269.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493658|gb|ACE02295.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493672|gb|ACE02308.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493686|gb|ACE02321.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493700|gb|ACE02334.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493714|gb|ACE02347.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493728|gb|ACE02360.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493812|gb|ACE02438.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493826|gb|ACE02451.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493840|gb|ACE02464.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493854|gb|ACE02477.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493896|gb|ACE02516.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493910|gb|ACE02529.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493924|gb|ACE02542.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493938|gb|ACE02555.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493952|gb|ACE02568.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493966|gb|ACE02581.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494008|gb|ACE02620.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494022|gb|ACE02633.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494036|gb|ACE02646.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494064|gb|ACE02672.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494078|gb|ACE02685.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494092|gb|ACE02698.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494120|gb|ACE02724.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494148|gb|ACE02750.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494162|gb|ACE02763.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494176|gb|ACE02776.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494190|gb|ACE02789.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494204|gb|ACE02802.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494218|gb|ACE02815.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494232|gb|ACE02828.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494260|gb|ACE02854.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494274|gb|ACE02867.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494288|gb|ACE02880.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494302|gb|ACE02893.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189494316|gb|ACE02906.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|189494330|gb|ACE02919.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|197941130|gb|ACH78266.1| NADH dehydrogenase subunit 6 [Canis lupus laniger] gi|225543872|gb|ACN91385.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|225543886|gb|ACN91398.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|225543900|gb|ACN91411.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|225543914|gb|ACN91424.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|225543928|gb|ACN91437.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|225543942|gb|ACN91450.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|225543956|gb|ACN91463.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|254028465|gb|ACT53161.1| NADH dehydrogenase subunit 6 [Canis lupus chanco] gi|294679617|gb|ADF29621.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|294774359|dbj|BAJ05642.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|294774373|dbj|BAJ05655.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|294774387|dbj|BAJ05668.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|294774401|dbj|BAJ05681.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|294774415|dbj|BAJ05694.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|294774443|dbj|BAJ05720.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|294774457|dbj|BAJ05733.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|294774471|dbj|BAJ05746.1| NADH dehydrogenase subunit 6 [Canis lupus] gi|294774485|dbj|BAJ05759.1| NADH dehydrogenase subunit 6 [Canis lupus] Length = 175 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|189492958|gb|ACE01645.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] Length = 175 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGVGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|71658035|ref|YP_271975.1| NADH dehydrogenase subunit 6 [Alectura lathami] gi|38048816|gb|AAR10289.1| NADH dehydrogenase subunit 6 [Alectura lathami] Length = 173 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ S V + +P Y V L+ V G L LG FV+++ +VY+G Sbjct: 2 TYFVLFLGVSFMLGSLAVASNPSPYYGVVGLVLGSVAGCGWLLSLGGSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVALAADPFPGAWGDWR 86 >gi|5835329|ref|NP_008327.1|ND6_11652 NADH dehydrogenase subunit 6 [Polypterus ornatipinnis] gi|2499296|sp|Q95919|NU6M_POLOR RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1663761|gb|AAC60316.1| NADH dehydrogenase subunit 6 [Polypterus ornatipinnis] Length = 167 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS M +IS V + +P ++ F L+ G+ + G F++MI ++Y+G Sbjct: 2 VLMVVFSVMFLISLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMILFLIYLGG 61 Query: 66 VIVFFLF--IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F + + L F+ I+A V Sbjct: 62 MLVVFAYSPALAAEPYPNAWGSWEVFSYVLVYMFLVIVAWVAFV 105 >gi|153128017|ref|YP_001382283.1| NADH dehydrogenase subunit 6 [Canis lupus lupus] gi|151416774|emb|CAM98648.1| NADH6 protein [Canis lupus lupus] Length = 175 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|91702701|gb|ABE48257.1| NADH dehydrogenase subunit 6 [Canis latrans] Length = 175 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|83309083|ref|YP_423960.1| NADH dehydrogenase subunit 6 [Lipotes vexillifer] gi|55274428|gb|AAV49122.1| NADH dehydrogenase subunit 6 [Lipotes vexillifer] Length = 175 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++S V + +PIY LI G+ G F+ ++ +VY Sbjct: 1 MMMYVAFIMSIIFMVSLVGVSSKPSPIYGGLGLIVGGAMGCGIVFSFGGSFLGLMMFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M A + LG F +G++ L V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEA-WISNKVVLGGFLLGLVVEILAV 104 >gi|42632199|ref|NP_976189.1| NADH dehydrogenase subunit 6 [Sebastes schlegelii] gi|38640818|gb|AAR26019.1| NADH dehydrogenase subunit 6 [Sebastes schlegelii] Length = 173 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF ++ V + +P ++ L+ G+ + G F +++ ++Y+G Sbjct: 2 TYIMSLFLIGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVAHGGPFKSLLLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + G +L + V ++ + + E S + Sbjct: 62 GMLVVFAYSAAL------AAEPYPESWVSGPVVGDMLMYLVGVGVASSVFWGGWYESSWV 115 Query: 125 VFK 127 Sbjct: 116 PAD 118 >gi|299829045|ref|YP_003734935.1| NADH dehydrogenase subunit 6 [Callorhinchus milii] gi|298110885|gb|ADI57838.1| NADH dehydrogenase subunit 6 [Callorhinchus milii] Length = 173 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Query: 6 LFFYLFSFMA-IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++F + M II V + +P ++ F L+ + GL G F++ + ++Y+G Sbjct: 2 IYFVMLMLMCFIIGLVGVASNPSPYFAAFGLVMSAAIGCGLLASHGTSFLSFVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F++ + AEP + + ++ L V + F + + Sbjct: 62 GMLVVFVYSAALT------AEPYPESWLDWPVLVNVMMYLLGVGVGVYYFFGEWNMMHWM 115 Query: 125 VFKGNN 130 N Sbjct: 116 GVDELN 121 >gi|239997535|gb|ACS37051.1| NADH dehydrogenase subunit 6 [Dermophis mexicanus] Length = 164 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 50/126 (39%), Gaps = 1/126 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F F ++ V + +P ++ L+ A + + + LG F++++ +VY Sbjct: 1 MSYVIFLGF-LGMMLGMIGVASNPSPYFAALGLVIAASSGCWILVGLGMTFLSLVLFLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + M A + + +L + ++ + + + Sbjct: 60 LGGMLVVFAYSAAMAAEPFPEAWGNLYVIYYMFVYGCVLLIVWGFVNIDVVLSAGDFSMI 119 Query: 123 RLVFKG 128 R + G Sbjct: 120 RCDWGG 125 >gi|221145546|ref|YP_002519818.1| NADH dehydrogenase subunit 6 [Thylacinus cynocephalus] gi|218135487|gb|ACK57337.1| NADH dehydrogenase subunit 6 [Thylacinus cynocephalus] gi|218135501|gb|ACK57350.1| NADH dehydrogenase subunit 6 [Thylacinus cynocephalus] Length = 166 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 43/98 (43%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +L S M ++ + +P+Y SL+ + G+ + LG F+ +I ++Y Sbjct: 1 MKMMVIFLLSLMLVMGFVAFASKPSPVYGGLSLVISGGIGCGIVVSLGNVFLGLIVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI 100 +G ++V F + M + + F F + Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNLVAFSMLVFAFL 98 >gi|119360789|ref|YP_913807.1| NADH dehydrogenase subunit 6 [Phoxinus percnurus mantschuricus] gi|119225567|dbj|BAF41907.1| NADH dehydrogenase subunit 6 [Phoxinus perenurus mantschuricus] Length = 173 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 7/122 (5%) Query: 8 FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F S + +I + V P ++ L+ A G+ + G F++++ ++Y+G + Sbjct: 4 FVFLSLLVLIVGLIAVASNPTPYFAALGLVVAAGVGCGVLVSCGGSFLSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + + AEP + S +L + V M + E S ++ Sbjct: 64 LVVFAYSAAL------AAEPFPEAWGSRSVIGYVLVYLVGVTLMAGMFWGEWYEGSWVII 117 Query: 127 KG 128 G Sbjct: 118 DG 119 >gi|14010691|ref|NP_114332.1| NADH dehydrogenase subunit 6 [Cebus albifrons] gi|13940267|emb|CAC37917.1| NADH subunit 6 [Cebus albifrons] Length = 177 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L S M + + +PIY L+F+ L L LG ++ ++ ++Y Sbjct: 1 MMYILF-LLSIMLVTGFVGFSSKPSPIYGGLVLVFSGAVGCVLMLYLGGSYMGLMVFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V F + M +D LG +G+ ++V Sbjct: 60 LGGMMVVFGYTAAM-AVDEYPETWVSSVDILGMLVLGLAMEVVVVLLLG 107 >gi|189494050|gb|ACE02659.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] Length = 175 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|29569556|gb|AAO85246.1| NADH dehydrogenase subunit 6 [Buteo platypterus platypterus] gi|281308298|gb|ADA58297.1| NADH dehydrogenase subunit 6 [Buteo platypterus] gi|281308300|gb|ADA58298.1| NADH dehydrogenase subunit 6 [Buteo platypterus] Length = 172 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGMPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|317134188|ref|YP_004123440.1| NADH dehydrogenase subunit 6 [Pseudopungtungia tenuicorpus] gi|223951254|gb|ACN29549.1| NADH dehydrogenase subunit 6 [Pseudopungtungia tenuicorpus] Length = 173 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGVLIGCGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + + A R G++ + IG++ A + + Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLVYLIGVILAAGLFWGGWY 110 >gi|37596477|gb|AAQ94999.1| NADH dehydrogenase subunit 6 [Vidua interjecta] gi|37596481|gb|AAQ95001.1| NADH dehydrogenase subunit 6 [Vidua orientalis aucupum] Length = 159 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 2/97 (2%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAA--D 76 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 E G +G F L + + S + + Sbjct: 77 PYPETWTDWGVVGYGFGMGLVVMVGLVMSGVLGLLTD 113 >gi|81230417|ref|YP_398784.1| NADH dehydrogenase subunit 6 [Nisaetus nipalensis] gi|77999949|dbj|BAE46844.1| NADH dehydrogenase subunit 6 [Spizaetus nipalensis] Length = 172 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGAGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|270155269|gb|ACZ62668.1| NADH dehydrogenase subunit 6 [Eleginops maclovinus] Length = 174 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 43/103 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F YLF ++ +V +P ++ F L+ G+ + G F++++ ++Y+G Sbjct: 2 AYFVYLFMVGLVLGMAVVAVNLSPYFAAFGLVVVAGMGCGVIISFGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F + + + +G++ I+ Sbjct: 62 GMLVVFAYSAALAAEPFPESFGTTGAVLYFMGLVGVVGVFAIL 104 >gi|29569572|gb|AAO85254.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus harrisi] Length = 172 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVFLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|29569564|gb|AAO85250.1| NADH dehydrogenase subunit 6 [Buteo albicaudatus colonus] gi|76009066|gb|ABA38995.1| NADH dehydrogenase subunit 6 [Buteo albicaudatus] Length = 172 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|25006448|dbj|BAC23943.1| NADH dehydrogenase subunit 6 [Polypterus ornatipinnis] Length = 167 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 47/110 (42%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS M +IS V + +P ++ F L+ G+ + G F++MI ++Y+G Sbjct: 2 VLMVVFSVMFLISLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGMTFLSMILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F + + A + ++ ++ + + +F Sbjct: 62 MLVVFAYSAALAAEPYPNAWGSWEVFSYVLVYMFLVIVAWVAFVGDMELF 111 >gi|222837025|ref|YP_002586866.1| NADH dehydrogenase subunit 6 [Gyrinomimus sp. UW 113191] gi|222051570|dbj|BAH15257.1| NADH dehydrogenase subunit 6 [Gyrinomimus sp. UW 113191] Length = 173 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 9/122 (7%) Query: 9 YLFSFMAI---ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 YL SF+ + + V + +P Y+ L+ GL + G F++++ ++Y+G Sbjct: 3 YLMSFLLVGFVVGLIAVASNPSPFYAALGLVVVAGLGCGLLVGHGGPFLSLVLFLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 ++V F + + AEP + S F + V + + E+ + Sbjct: 63 MLVVFAYSAAL------AAEPFPESWGSWSVFGQAFIYFMGVVLAFWYFRGGWSEVCWVP 116 Query: 126 FK 127 Sbjct: 117 VD 118 >gi|213136079|gb|ACJ43633.1| NADH dehydrogenase subunit 6 [Echinotriton chinhaiensis] Length = 172 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 36/81 (44%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L M ++ V + +P ++ F L+ A V L GA F++++ +VY+G ++V Sbjct: 6 FLSMIMMLVGLIAVASNPSPYFAAFGLVLASVGGCCLLADFGASFLSLVLFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKK 89 F + + A Sbjct: 66 VFAYSASLAAEPYPEAWGSWS 86 >gi|75055386|sp|Q5ULB0|NU6M_BOSMU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|54654338|gb|AAV37053.1| NADH dehydrogenase subunit 6 [Bos grunniens] Length = 175 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F +L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WLLNKAVLGAFITALLMEFFMV 104 >gi|281308358|gb|ADA58327.1| NADH dehydrogenase subunit 6 [Leucopternis melanops] gi|281308360|gb|ADA58328.1| NADH dehydrogenase subunit 6 [Leucopternis melanops] Length = 172 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|281308346|gb|ADA58321.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis] Length = 172 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|149173388|ref|ZP_01852018.1| thiol:disulfide interchange protein dsbD (precursor) [Planctomyces maris DSM 8797] gi|148847570|gb|EDL61903.1| thiol:disulfide interchange protein dsbD (precursor) [Planctomyces maris DSM 8797] Length = 779 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 10/98 (10%) Query: 23 VTVRNPIYSVFSLIFAFVNAAGLFLLLGA---------EFVAMITLVVYVGAVIVFFLFI 73 + N YS ++ F+ A L + G +F ++ +VY + + +F Sbjct: 411 IFALNIFYS-LGVLTVFLGLASLAVFAGLGWGGLFQSTKFNIIMACIVYAMGLSMLGVFE 469 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 I + + A ++K G G+F GILA L S Sbjct: 470 IPVPGMVGSAASGQQKEGLTGAFLTGILATLLATPCSG 507 >gi|327492721|ref|YP_004347611.1| NADH dehydrogenase subunit 6 [Auriglobus modestus] gi|327392348|dbj|BAK09793.1| NADH dehydrogenase subunit 6 [Auriglobus modestus] Length = 173 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 44/113 (38%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 +L LF ++ V + +P + SL+ G+ + G F++++ ++Y+G Sbjct: 2 TLVMSLFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + FL + G++ ++ +S Sbjct: 62 GMLVVFAYSAALAAEPYPETLGSWPVLFLVVAYCGVVVLSYVMLLGWEGDYSW 114 >gi|189492398|gb|ACE01125.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] gi|189493882|gb|ACE02503.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] Length = 175 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|166065709|gb|ABY80028.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] Length = 175 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|194277576|ref|YP_492579.2| NADH dehydrogenase subunit 6 [Coreoleuciscus splendidus] gi|190888464|gb|ABC56378.2| NADH dehydrogenase subunit 6 [Coreoleuciscus splendidus] Length = 173 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 7/126 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFMLLMAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGILVGSGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + + AEP + S F ++ + V + M + E S Sbjct: 60 LGGMLVVFAYSAAL------AAEPFPEAWGSRSVFGYVMIYLVGVVLTAGMSWGGWYEGS 113 Query: 123 RLVFKG 128 ++ G Sbjct: 114 WVMIDG 119 >gi|194442196|ref|YP_002038856.1| NADH dehydrogenase subunit 6 [Tomistoma schlegelii] gi|81295137|emb|CAH18641.1| NADH dehydrogenase subunit 6 [Tomistoma schlegelii] Length = 175 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+ S + ++ LV Y V SL+FA +++ GL + G F+ M+ L++Y+G Sbjct: 3 MTFFALSSLMLVGVVLVSAGATTHYGVISLLFAALSSGGLLAVGGGSFMPMVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAE 104 ++V F F + D E +G +G G++ Sbjct: 63 LLVVFTFCVGFTDDKYCEFWGVGASKGLVGVCGAGLMVVG 102 >gi|126792912|gb|ABO27312.1| NADH dehydrogenase subunit 6 [Cyanoliseus patagonus] Length = 170 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +++S LV + +P Y V L+F + G + LG FV+++ +VY+G + Sbjct: 4 LLVFLGVSFVLASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGTSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +V F++ + + A + +G++ A + + Sbjct: 64 LVVFVYSVSLAADPFPQAWGG---WHAMGYVLGLVPAGAGLVVWGW 106 >gi|223468823|gb|ACM89976.1| NADH dehydrogenase subunit 6 [Hieraaetus fasciatus] Length = 172 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGAGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|254500159|ref|ZP_05112310.1| NADH-Ubiquinone/plastoquinone (complex I), domain protein [Labrenzia alexandrii DFL-11] gi|222436230|gb|EEE42909.1| NADH-Ubiquinone/plastoquinone (complex I), domain protein [Labrenzia alexandrii DFL-11] Length = 794 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 2/138 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + + + +A++ V+ + + ++ SL A +FLL GA +A L+ Sbjct: 602 MPIYTFYEWSIFLIAVLGLISVLVAKTRLTAIVSLGIQGFAVALIFLLFGAPDLAFTQLM 661 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 V +V++ L +M + + L + + Sbjct: 662 VETLSVVILAL--VMTRLNLSPRDHRNGVSTLITGAISVSVGLGLGLTLMAITQQPFDRR 719 Query: 121 LSRLVFKGNNVENIGKVL 138 LS + +N G+ + Sbjct: 720 LSDFFTEYSNSIAYGRNI 737 >gi|19481572|gb|AAL88858.1|AF407125_1 NADH dehydrogenase subunit 6 [Prunella montanella] Length = 159 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|16357386|ref|NP_443695.1| NADH dehydrogenase subunit 6 [Helicolenus hilgendorfi] gi|16267296|dbj|BAB70415.1| NADH dehydrogenase subunit 6 [Helicolenus hilgendorfi] Length = 173 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TYIMSLFLIGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGYGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + G ++ + V ++ + + E S + Sbjct: 62 GMLVVFAYSAAL------AAEPYPESWVSGPVVGDMVMYLVGVGVASSVFWGGWYESSWV 115 Query: 125 VFK 127 Sbjct: 116 PAD 118 >gi|301353460|ref|YP_003795682.1| NADH dehydrogenase subunit 6 [Miichthys miiuy] gi|300069604|gb|ADJ66707.1| NADH dehydrogenase subunit 6 [Miichthys miiuy] Length = 173 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF F ++ V + +P + L+ G+ + G F++++ ++Y+G Sbjct: 2 TYIMSLFLFGLVLGVIAVASNPSPYFGALGLVVVAGLGCGVLVGHGGHFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 ++V F++ + + + + + + +A ++V + + S Sbjct: 62 GMLVVFVYSTALAAEPYPESWGSRS---VMVYVLAYVAGVIMVSGLFWEGWHGAFWAS 116 >gi|239997661|gb|ACS37168.1| NADH dehydrogenase subunit 6 [Schistometopum thomense] Length = 170 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 49/121 (40%) Query: 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFI 73 ++S V + +P ++ F L+ + + ++ G F++++ ++Y+G ++V F + Sbjct: 11 FLVVSMIGVASNPSPYFAAFGLVIGALAGCWVLVVFGMSFLSLVLFMIYLGGMLVVFAYS 70 Query: 74 IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN 133 ++ +A + + +L L + V ++ + + V Sbjct: 71 AALVAEPYPMAWGSRLVINYMMVYCVVLWVSLFYVDDCWDVMISDSSFFAVRYDWGGVSM 130 Query: 134 I 134 + Sbjct: 131 L 131 >gi|224476050|ref|YP_002633656.1| monovalent cation/H+ antiporter subunit A [Staphylococcus carnosus subsp. carnosus TM300] gi|222420657|emb|CAL27471.1| putative Na+/H+ antiporter subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 805 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 4/127 (3%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + M + S+F++V R+ ++S+ L + A F+ A +A+ VV + Sbjct: 627 IIVIMILASAFMIVFARSRLFSIIMLSAVGYSMAIFFIFFNAPDLALTQFVVETISTA-- 684 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 LF++ + K +G+ I ++V + + + S + Sbjct: 685 -LFLLCFYHLPNLNRYNESKSFKVGNALIAA-GVGIVVTVLGLIAYGNKHFESIASYYKE 742 Query: 130 NVENIGK 136 NV ++ Sbjct: 743 NVHSLAH 749 >gi|14141876|ref|NP_115362.1|ND6_15666 NADH dehydrogenase subunit 6 [Casuarius casuarius] gi|14039595|gb|AAK53331.1|AF338713_13 NADH dehydrogenase subunit VI [Casuarius casuarius] Length = 173 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + I+ + V + +P Y V L+ V G L LG F++++ +VY+G Sbjct: 2 TYFIFFLGLCFILGALAVASNPSPYYGVLGLVVGSVVGCGWLLSLGVSFISLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 ++V F++ + + E LG L + V +FM Sbjct: 62 GMLVVFVYSVSLAA--DPFPETWGDWRVLGYGVGLALVVFVGVVMGDFM 108 >gi|29569570|gb|AAO85253.1| NADH dehydrogenase subunit 6 [Buteo leucorrhous] gi|281308370|gb|ADA58333.1| NADH dehydrogenase subunit 6 [Buteo leucorrhous] gi|281308372|gb|ADA58334.1| NADH dehydrogenase subunit 6 [Buteo leucorrhous] gi|281308374|gb|ADA58335.1| NADH dehydrogenase subunit 6 [Buteo leucorrhous] Length = 172 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|76009074|gb|ABA38999.1| NADH dehydrogenase subunit 6 [Leucopternis semiplumbeus] Length = 172 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|325126689|ref|YP_004285839.1| NADH dehydrogenase subunit 6 [Nymphicus hollandicus] gi|304365599|gb|ADM26402.1| NADH dehydrogenase subunit 6 [Nymphicus hollandicus] Length = 171 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + ++++ V + +P Y V L+ + G + LG FV+++ +VY+G ++V Sbjct: 7 FMGIVFVLAALAVASNPSPYYGVVGLVLGSIAGCGWLVSLGVSFVSLVLFMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILA 102 F++ + + A R G++ + I+ Sbjct: 67 FVYSVSLAADPYPQAWGDRHVMGYIVGLGLVIVL 100 >gi|322422839|ref|YP_004222623.1| NADH dehydrogenase subunit 6 [Heterocephalus glaber] gi|316891383|gb|ADU57108.1| NADH dehydrogenase subunit 6 [Heterocephalus glaber] Length = 176 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +Y S + +I +PIY SLI + + L G F+ ++ +V+ Sbjct: 1 MTLNVYYFLSILFVIGCVGFSVKPSPIYGGLSLIVSGALGCVIILGYGGSFLGLMVFLVF 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + M + + F + L N+ Sbjct: 61 LGGMMVVFGYTTAMSMEQYPESWVSNVAVWSVMLFSLFMEGLLSYVWLNY 110 >gi|313768472|ref|YP_004062151.1| NADH dehydrogenase subunit 6 [Cuora amboinensis] gi|225194544|gb|ACN81799.1| NADH dehydrogenase subunit 6 [Cuora amboinensis] Length = 174 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +L F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLLGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + ++ V + F G +++ I+ ++ ++S EG + V Sbjct: 64 LVIFAYSSALMAESFPVGWVSLEGVFYGLYYLFII---VVFMQMGCHLWSIEGIGADTVD 120 Query: 127 KGN 129 G Sbjct: 121 AGG 123 >gi|25057740|ref|NP_739969.1| NADH dehydrogenase subunit 6 [Allocyttus niger] gi|25005941|dbj|BAC23565.1| NADH dehydrogenase subunit 6 [Allocyttus niger] Length = 173 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P Y+ L+ G+ ++ G F++++ ++Y+G ++V F + + Sbjct: 21 SNPSPYYAALGLVLVAGAGCGVLVVCGGGFLSLVLFLIYLGGMLVVFAYSAAL------A 74 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 AEP + + F +L ++V +++ E S + Sbjct: 75 AEPYPEAWGGRAVFGYVLIYIMLVLGASWWAGGGWYEGSWVPV 117 >gi|207559824|gb|ACI24430.1| NADH dehydrogenase subunit 6 [Budorcas taxicolor] Length = 175 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 3/107 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+M +F + S + ++ + +PIY LI + G+ L G F+ ++ + Sbjct: 1 MIMYIVF--ILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNYGGSFLGLMVFL 58 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 VY+G ++V F + M + LG+F G+L ++ Sbjct: 59 VYLGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFFMI 104 >gi|226463970|ref|YP_002734927.1| NADH dehydrogenase subunit 6 [Chamaeleo zeylanicus] gi|124055076|gb|ABM89693.1| NADH dehydrogenase subunit 6 [Chamaeleo zeylanicus] Length = 171 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 V + +P + SL A V A + L + F++++ ++VY+G ++V F++ + M Sbjct: 15 GVASNPSPYFGGVSLALASVFGACIMAGLSSTFISLVLMLVYLGGMLVVFIYSVAMSSDV 74 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 A + F+G L Sbjct: 75 YPEAWGNRSVFLYVVGFLGYLFCLWWYIGG 104 >gi|76009044|gb|ABA38984.1| NADH dehydrogenase subunit 6 [Buteo albicaudatus] Length = 172 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|29570681|ref|NP_818902.1| NADH dehydrogenase subunit 6 [Chalceus macrolepidotus] gi|29501120|dbj|BAC67479.1| NADH dehydrogenase subunit 6 [Chalceus macrolepidotus] Length = 172 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F LF ++ V + P ++ L+ A G+ + G F++++ ++Y+G + Sbjct: 4 IFCLFLLGLVVGLVAVASNPAPYFAALGLVVAAGVGCGILVGHGGSFLSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + + AEP + S +LA L+V + + E S V Sbjct: 64 LVVFAYSAAL------AAEPFPESWGDRSVIGYVLAYLLVVGVAGWWAQGGWYEGSWFVV 117 Query: 127 KG 128 Sbjct: 118 DS 119 >gi|281308348|gb|ADA58322.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis] Length = 172 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|28493607|ref|NP_787768.1| DNA recombination protein RmuC-like protein [Tropheryma whipplei str. Twist] gi|28476649|gb|AAO44737.1| DNA recombination protein RmuC-like protein [Tropheryma whipplei str. Twist] Length = 482 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 8/44 (18%) Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRR------DIKRQDISKQL 180 + ++ +LL+++IGA+++ R K Q++S Q+ Sbjct: 42 IWLFILT--VLLVALIGAVLISERKTSSCNRLLSKKNQELSDQV 83 >gi|319948605|ref|ZP_08022730.1| putative monovalent cation/H+ antiporter subunit A [Dietzia cinnamea P4] gi|319437735|gb|EFV92730.1| putative monovalent cation/H+ antiporter subunit A [Dietzia cinnamea P4] Length = 1014 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 +++ +RN + +V + A +F GA +A+ +V ++V F+ ++ Sbjct: 613 VAAVAATVLRNRLAAVICMSVTGYGVAVIFAFHGAPDLALTQALVET-LMMVAFVLVLRT 671 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 + ++ +++ ++ +G+L + A N Sbjct: 672 MPAEVPLSDGFRRLRAWLGIGVGLLVVIVGAYAIN 706 >gi|296164199|ref|ZP_06846796.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900447|gb|EFG79856.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 187 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 81/186 (43%), Gaps = 13/186 (6%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + +++ + +A+++ V V + + ++L +FV + L+L ++ ++T+++ V Sbjct: 4 DVVYWICAVIAVLAGAAVFRVTSMARATYALAVSFVAVGVVVLVLAQNYIGVVTILMMVM 63 Query: 65 AVIVFFLFIIMMLDIDIEVAEPR----KKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 + V ++++M + ++ + K+R + +L A I+ + Sbjct: 64 EMAVMAVYMVMFMGMNPALMPMSMVHDKRRALAAAVGTFVLLASGILVV--------DWP 115 Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVL-MLRHRRDIKRQDISKQ 179 R + ++G+ L + + I++ +++ IVL R R D D+ ++ Sbjct: 116 SRRGAPPPDVTASLGQELMGPKMLAMAVISPIMVATIVAGIVLAAKRSRYDRFGDDLKQR 175 Query: 180 LESNPD 185 +P Sbjct: 176 PARDPQ 181 >gi|229927536|ref|YP_002887596.1| NADH dehydrogenase subunit 6 [Diceros bicornis] gi|229473095|gb|ACQ73070.1| NADH dehydrogenase subunit 6 [Diceros bicornis] Length = 175 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S M +I + +PIY LI + G+ + G F+ ++ +VY Sbjct: 1 MMTYIGFILSIMFVIGFVGFSSKPSPIYGGLVLIMSGGFGCGIVMSFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + + + LG+F +G+L +++ Sbjct: 61 LGGMLVVFGYT-TAMATEQYPETWVSNATVLGAFVLGVLMEVMLIL 105 >gi|94481707|gb|ABF21419.1| NADH dehydrogenase subunit 6 [Gadus ogac] Length = 173 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 ++ V + +P Y+ L+ + + G F++++ ++Y+G ++V F + Sbjct: 12 MVLGVISVASNPSPYYAALGLVLVAXVGCVVLMGHGGSFLSLVLFLIYLGGMLVVFAYCA 71 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + AEP + S +L L+V + + E + Sbjct: 72 AL------AAEPYPEAWGEWSVLGSVLGYLLLVVGAGSWFWGGWYEGMWVPVD 118 >gi|38349487|ref|NP_941389.1| NADH dehydrogenase subunit 6 [Acinonyx jubatus] gi|33340793|gb|AAQ14963.1|AF344830_12 NADH dehydrogenase subunit 6 [Acinonyx jubatus] gi|38373510|gb|AAR19078.1| NADH dehydrogenase subunit 6 [Acinonyx jubatus] Length = 175 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTIFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K LG F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGMFITGVLAELLTAC 105 >gi|29569560|gb|AAO85248.1| NADH dehydrogenase subunit 6 [Buteo polyosoma polyosoma] Length = 172 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|220914395|ref|YP_002489704.1| monovalent cation/H+ antiporter subunit A [Arthrobacter chlorophenolicus A6] gi|219861273|gb|ACL41615.1| NADH dehydrogenase (quinone) [Arthrobacter chlorophenolicus A6] Length = 1004 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 3/118 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + +I + V +V + A +F L GA +A+ ++V I+ Sbjct: 619 VAGIGIVIGALAAVKANKRFLAVLMVSVTGYGIALMFALQGAPDLALTQMLV---ETIIL 675 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 F++ M + E+ + + + IG +V A+ + + + + L F Sbjct: 676 VAFVLGMRRLPPELRDRTGGKYRVVRVIIGAAFGATMVFAAIYAMGARVAQPISLQFP 733 >gi|190349536|ref|YP_001974771.1| NADH dehydrogenase subunit 6 [Canthigaster rivulata] gi|89885702|dbj|BAE86980.1| NADH dehydrogenase subunit 6 [Canthigaster rivulata] Length = 173 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 38/94 (40%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P + SL+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 21 SNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 S + G+++ ++ + +S Sbjct: 81 TLGSWPVLASMSMYFGVVSLVFVLFLGGWGEYSW 114 >gi|304322921|ref|YP_003856759.1| NADH dehydrogenase subunit 6 [Sturnus sericeus] gi|302377864|gb|ADL32016.1| NADH dehydrogenase subunit 6 [Sturnus sericeus] Length = 172 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 V + +P Y V L+ A V G + LG FV ++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVGLVLVMVYLGGMLVVFVYSVSL 73 >gi|45685689|ref|YP_003724.1| NADH dehydrogenase subunit 6 [Rhyncholestes raphanurus] gi|45598239|emb|CAD48224.1| NADH dehydrogenase subunit 6 [Rhyncholestes raphanurus] Length = 165 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 41/107 (38%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ L ++FS + + +P+Y SL+ + + + L F+ ++ +VY Sbjct: 1 MKMLVIFMFSLLLTFGFVAFASKPSPVYGGLSLVASGGLGCAMMVCLEDTFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + M + + F ++ L Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWIGNFVALGMLLFTLVVELILFFML 107 >gi|29569540|gb|AAO85238.1| NADH dehydrogenase subunit 6 [Buteo albigula] Length = 172 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|313666489|ref|YP_004061422.1| NADH dehydrogenase subunit 6 [Protopterus aethiopicus] gi|313474916|dbj|BAJ40861.1| NADH dehydrogenase subunit 6 [Protopterus aethiopicus] Length = 170 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S F++ + S V + P ++ L+F G+ + LG F++++ ++Y+G Sbjct: 2 SFLFFIMLVGFLASLVGVASNPAPYFAALGLVFGAGIGCGILIWLGNSFLSLVLFLIYLG 61 Query: 65 AVIVFF 70 ++V F Sbjct: 62 GMLVVF 67 >gi|312233406|ref|YP_004021642.1| NADH dehydrogenase subunit 6 [Leggadina lakedownensis] gi|161621712|gb|ABX75326.1| NADH dehydrogenase subunit 6 [Leggadina lakedownensis] Length = 172 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + S + +PIY F L+ + L G F+ ++ +VY+G ++V Sbjct: 6 FILSLVFLTGSLGLALKPSPIYGGFGLVICGCMGCLMVLGFGGSFLGLMVFLVYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + M + F +G+ + V N+ Sbjct: 66 VFGYTTAMATEEYPETWGSNWLVF-WLLIVGVFMEMVYVYFLNY 108 >gi|189493644|gb|ACE02282.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] Length = 175 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFVLSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|28975383|gb|AAO61768.1| NADH dehydrogenase subunit 6 [Aquila chrysaetos chrysaetos] Length = 172 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGAGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|5836014|ref|NP_008775.1|ND6_15100 NADH dehydrogenase subunit 6 [Chelonia mydas] gi|5103700|dbj|BAA79208.1| NADH dehydrogenase subunit 6 [Chelonia mydas] Length = 174 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LF F + V +P Y V SL+ GL + +G FV+++ ++Y+G ++V Sbjct: 6 FLFGFCFVFWMVGVSCNPSPYYGVLSLVLGAAFGCGLLVSMGGSFVSVVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F + +++ VA + ++ ++ ++C + ++S EG S V G Sbjct: 66 IFAYSSALVEEPYPVAWGSQGGVVYVVSYVLVVLVYGMMC---YWLWSMEGYGSVTVDAG 122 Query: 129 N 129 Sbjct: 123 G 123 >gi|189464675|ref|ZP_03013460.1| hypothetical protein BACINT_01018 [Bacteroides intestinalis DSM 17393] gi|189436949|gb|EDV05934.1| hypothetical protein BACINT_01018 [Bacteroides intestinalis DSM 17393] Length = 1114 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 9/129 (6%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 ++ + + I + T +N + S + LLG F T V +G Sbjct: 265 VYIIVLAGSIIWGIYESYTEKNKMRMAISFVLTI-------ALLGIPFYGHGTSAVVIGI 317 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +++ FLF L ++ + K R + +L +IV + + Sbjct: 318 IVIAFLF--FYLSPKMQASMKEKYRISARTLNTSLLCTMMIVIGYSSYAIIVIRSTANTP 375 Query: 126 FKGNNVENI 134 N+ E+I Sbjct: 376 MDQNSPEDI 384 >gi|76009028|gb|ABA38976.1| NADH dehydrogenase subunit 6 [Leucopternis melanops] gi|76009030|gb|ABA38977.1| NADH dehydrogenase subunit 6 [Leucopternis melanops] Length = 172 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|281308344|gb|ADA58320.1| NADH dehydrogenase subunit 6 [Ictinia plumbea] Length = 172 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|281308336|gb|ADA58316.1| NADH dehydrogenase subunit 6 [Haliaeetus leucocephalus] gi|281308338|gb|ADA58317.1| NADH dehydrogenase subunit 6 [Haliaeetus leucocephalus] Length = 172 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|280978501|ref|YP_003345422.1| NADH dehydrogenase subunit 6 [Robinsia catherinae] gi|271280132|dbj|BAI53222.1| NADH dehydrogenase subunit 6 [Robinsia catherinae] gi|293329593|dbj|BAJ04322.1| NADH dehydrogenase subunit 6 [Robinsia catherinae] Length = 172 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 1/87 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F + ++ V + P Y L+ A G+ G F++++ ++Y Sbjct: 1 MSYFVFSFLGMV-VVGFLCVASNPAPYYGALGLVLAAAGGCGILADFGGSFISLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKK 89 +G ++V F + + + Sbjct: 60 LGGMLVVFAYSAALAAEPYPESWGNWS 86 >gi|190349522|ref|YP_001974758.1| NADH dehydrogenase subunit 6 [Canthigaster coronata] gi|89885688|dbj|BAE86967.1| NADH dehydrogenase subunit 6 [Canthigaster coronata] Length = 173 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 37/94 (39%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P + SL+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 21 SNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + G+++ ++ + +S Sbjct: 81 TLGSWPVLISMLMYFGVVSLVFVLFLGGWGEYSW 114 >gi|91702603|gb|ABE48166.1| NADH dehydrogenase subunit 6 [Canis lupus] Length = 175 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY F LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGFVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|296392805|ref|YP_003657689.1| NADH/Ubiquinone/plastoquinone complex I [Segniliparus rotundus DSM 44985] gi|296179952|gb|ADG96858.1| NADH/Ubiquinone/plastoquinone (complex I) [Segniliparus rotundus DSM 44985] Length = 956 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 4/128 (3%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + M +I + V + + I +V + LF L GA +A+ +V + Sbjct: 599 VVAVMMMIGAVAAVALTHRIGAVLAAGVTGYGCGVLFSLHGAPDLALTQFLV---ETLTL 655 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 +F +++ D EP + + + + F + SA G + + Sbjct: 656 VVFTLVLRKFDARTNEPIPVFSYAVRIVFSLAVGGALSLLALFAI-SARGAGAPALAGSL 714 Query: 130 NVENIGKV 137 E + + Sbjct: 715 AAEGLARA 722 >gi|157939565|ref|YP_001496989.1| NADH dehydrogenase subunit 6 [Bufo japonicus] gi|157908536|dbj|BAF81504.1| NADH dehydrogenase subunit 6 [Bufo japonicus] Length = 164 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 40/102 (39%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF I+ V + +P Y+ L+ + + + GA F+ ++ +VY+G ++V Sbjct: 4 LFELGLIVGLLAVASNPSPYYAALGLVGSAGAGCLILMDGGASFLCLVLFLVYLGGMMVV 63 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + ++ A + +L +V + Sbjct: 64 FAYSAALVAEPYPEAWGGGVVWSYIVVYTVLLGVWWVVGGVS 105 >gi|327492861|ref|YP_004347741.1| NADH dehydrogenase subunit 6 [Tetraodon biocellatus] gi|327392404|dbj|BAK09845.1| NADH dehydrogenase subunit 6 [Tetraodon biocellatus] Length = 173 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 41/108 (37%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P + SL+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + + GI+ I+ + +S Sbjct: 67 FAYSAALAAEPYPETLGSWPVLASMLMYSGIVVLVFILFLGGWGEYSW 114 >gi|262188109|ref|YP_003276034.1| NADH dehydrogenase subunit 6 [Cuon alpinus] gi|261840647|gb|ACY00247.1| NADH dehydrogenase subunit 6 [Cuon alpinus] Length = 175 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY F LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGFVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELLTAC 105 >gi|219524227|ref|YP_002456370.1| NADH dehydrogenase subunit 6 [Lama guanicoe] gi|186968993|gb|ACC97315.1| NADH dehydrogenase subunit 6 [Lama guanicoe] Length = 175 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S M +I + +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIMFVIGFISFSSKPSPIYGGLGLIVSGGVGCMIVLSYGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G++ L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKTVLGAFTFGLVVEMLMVV 105 >gi|223976146|ref|YP_002601083.1| NADH dehydrogenase subunit 6 [Lama glama] gi|38602639|emb|CAD98824.1| NADH6 protein [Lama pacos] gi|223972343|dbj|BAH23378.1| NADH dehydrogenase subunit 6 [Lama glama] Length = 175 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S M +I + +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIMFVIGFISFSSKPSPIYGGLGLIVSGGVGCMIVLSYGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G++ L+V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKTVLGAFTFGLVVEMLMVV 105 >gi|28975385|gb|AAO61769.1| NADH dehydrogenase subunit 6 [Aquila chrysaetos chrysaetos] Length = 172 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGAGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|81230459|ref|YP_398797.1| NADH dehydrogenase subunit 6 [Nisaetus alboniger] gi|77999963|dbj|BAE46857.1| NADH dehydrogenase subunit 6 [Spizaetus alboniger] Length = 172 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGAGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|281308246|gb|ADA58271.1| NADH dehydrogenase subunit 6 [Buteo albigula] Length = 172 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|45686006|ref|YP_003711.1| NADH dehydrogenase subunit 6 [Caenolestes fuliginosus] gi|45597943|emb|CAD48237.1| NADH dehydrogenase subunit 6 [Caenolestes fuliginosus] Length = 166 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 43/115 (37%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + ++FS + + +P+Y SL+ + + + L F+ ++ +VY Sbjct: 1 MKMMVIFMFSLLLTFGFVAFASKPSPVYGGLSLVVSGGLGCAIVVSLEDIFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M + + F ++ + + S Sbjct: 61 LGGMLVVFGYTAAMATEEYPESWVGNSVALSMLLFTLVVELVWFLTLGEVELISN 115 >gi|76009050|gb|ABA38987.1| NADH dehydrogenase subunit 6 [Leucopternis polionotus] Length = 172 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|76009054|gb|ABA38989.1| NADH dehydrogenase subunit 6 [Leucopternis polionotus] Length = 172 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|294494334|gb|ADE93030.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494340|gb|ADE93034.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494346|gb|ADE93038.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494349|gb|ADE93040.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494352|gb|ADE93042.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494355|gb|ADE93044.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494358|gb|ADE93046.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494361|gb|ADE93048.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494364|gb|ADE93050.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494367|gb|ADE93052.1| NADH dehydrogenase subunit 6 [Seriola dumerili] Length = 173 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + + E R ++ + G++ + + Sbjct: 62 GMLVVFAYSAALAAEPYPETWGSRPVVTYMVVYLAGVVLVSALFWGGWY 110 >gi|29569568|gb|AAO85252.1| NADH dehydrogenase subunit 6 [Buteo magnirostris saturatus] gi|76009036|gb|ABA38980.1| NADH dehydrogenase subunit 6 [Buteo magnirostris] gi|76009062|gb|ABA38993.1| NADH dehydrogenase subunit 6 [Buteo magnirostris] gi|281308290|gb|ADA58293.1| NADH dehydrogenase subunit 6 [Buteo magnirostris] Length = 172 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|21310271|gb|AAM46177.1|AF384097_2 NADH dehydrogenase subunit 6 [Trichosurus caninus] Length = 164 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LFS + I + +PIY SL+ + + + + LG F+ ++ +VY+G ++V Sbjct: 4 FLFSVLFIFGFVAFASKPSPIYGGLSLVVSGGLGSAIVVSLGNTFLGLVVFLVYLGGMLV 63 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + M + + F F + + V +A Sbjct: 64 VFGYTSAMATEEYPESWVGNMVAFSMLLFTLFVELVWYFMSGEVEVDTA 112 >gi|25057706|ref|NP_739943.1| NADH dehydrogenase subunit 6 [Parazen pacificus] gi|25005913|dbj|BAC23539.1| NADH dehydrogenase subunit 6 [Parazen pacificus] Length = 173 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 42/102 (41%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + +P Y+ L+ G+ ++ G F++++ ++Y+G ++V F + Sbjct: 13 VVGLMGVASNPSPYYAALGLVVVAGAGCGMLMMYGGGFLSLVLFLIYLGGMLVVFAYSAA 72 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + A + ++ ++ L + + V S Sbjct: 73 LAAEPYPEAWGGRAVLGYVIAYVVLVLGALWCVSGEWYVGSW 114 >gi|327199752|gb|AEA36017.1| NADH dehydrogenase subunit 6 [Calyptorhynchus lathami] Length = 172 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F I+++ V + +P Y V L+ + G + LG FV+++ +VY+G Sbjct: 2 AYFVLFLGVSFILAALAVASNPSPYYGVIGLVLGSIVGCGWLMSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|229925766|ref|YP_002887583.1| NADH dehydrogenase subunit 6 [Coelodonta antiquitatis] gi|229473081|gb|ACQ73057.1| NADH dehydrogenase subunit 6 [Coelodonta antiquitatis] Length = 175 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY L+ + G+ + G F+ ++ ++Y Sbjct: 1 MMTYMGFILSIVFVISFVGFSSKPSPIYGGLVLVVSGGVGCGIVMSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A LG+F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEA-WVSNVTVLGAFILGVLMEVVLVL 105 >gi|207559810|gb|ACI24417.1| NADH dehydrogenase subunit 6 [Hemitragus jayakari] Length = 175 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFVTGLLMEFFMV 104 >gi|187250421|ref|YP_001874838.1| NADH dehydrogenase subunit 6 [Naemorhedus swinhoei] gi|145967300|gb|ABP99016.1| NADH dehydrogenase subunit 6 [Naemorhedus swinhoei] Length = 175 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSILFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + + + + + LG+F G+L +V Sbjct: 61 LGGMMVVFGYT-TAMATEQYLKVWVSSKVVLGTFITGLLMEFFMV 104 >gi|76009024|gb|ABA38974.1| NADH dehydrogenase subunit 6 [Leucopternis occidentalis] gi|76009026|gb|ABA38975.1| NADH dehydrogenase subunit 6 [Leucopternis occidentalis] gi|281308350|gb|ADA58323.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis] gi|281308362|gb|ADA58329.1| NADH dehydrogenase subunit 6 [Leucopternis occidentalis] gi|281308364|gb|ADA58330.1| NADH dehydrogenase subunit 6 [Leucopternis occidentalis] Length = 172 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|108793404|ref|YP_636943.1| NADH dehydrogenase subunit 6 [Diretmus argenteus] gi|25005829|dbj|BAC23461.1| NADH dehydrogenase subunit 6 [Diretmus argenteus] Length = 171 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 4/115 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M +FF + +VV + Y+ LIF V +G G F+ + + Sbjct: 1 MPMLEIFFV---SGVLFGMLMVVCTSSTYYASLGLIFVCVLGSGAVCCSGGVFLCLALAL 57 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 +Y+ ++V F+F + E L + +GI S + Sbjct: 58 IYLAGMLVVFIFCTALSPEAYPEDEGSSWNMNLVAM-VGIFWVVTCFFWSWVPSY 111 >gi|332886942|dbj|BAK23054.1| NADH dehydrogenase subunit 6 [Luciosoma bleekeri] Length = 178 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 2/121 (1%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ V + P + L+ G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLAALVVGMIAVASNPTPYFGALGLVVVAGVGCGILVGHGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 +F E +G + +L LI + + + Sbjct: 66 --VFAYSTALAAESYPEAWGSLSVVGYVIMYMLGVGLIAMYLGAGWYEGSWMVMNGTWGF 123 Query: 129 N 129 + Sbjct: 124 S 124 >gi|281308260|gb|ADA58278.1| NADH dehydrogenase subunit 6 [Buteo brachyurus] Length = 172 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|221143426|ref|YP_002519444.1| NADH dehydrogenase subunit 6 [Rudarius ercodes] gi|219806991|dbj|BAH10497.1| NADH dehydrogenase subunit 6 [Rudarius ercodes] Length = 173 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 40/96 (41%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ L G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVLVSGLGCGILLGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPY 78 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + +++ ++ A + + FS Sbjct: 79 PDSWGSEPVVVSALWYVVMVTAASMFFWGGWYEFSW 114 >gi|109689593|ref|YP_659471.1| NADH dehydrogenase subunit 6 [Presbytis melalophos] gi|88174272|gb|ABD39277.1| NADH dehydrogenase subunit 6 [Presbytis melalophos] Length = 174 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 2/107 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L S + ++ + +PIY +LI + V G+ L G ++ ++ ++Y Sbjct: 1 MSYILF-LLSVLLVMGFVGFSSKPSPIYGGLALIISGVIGCGIILNYGGTYMGLMMFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + + I+ LGS +G+ +V Sbjct: 60 LGGMMVVFGYT-TAMAIEEYPEAWVSGFEVLGSLLVGLAMEVGLVLW 105 >gi|330466405|ref|YP_004404148.1| putative monovalent cation/H+ antiporter subunit A [Verrucosispora maris AB-18-032] gi|328809376|gb|AEB43548.1| putative monovalent cation/H+ antiporter subunit A [Verrucosispora maris AB-18-032] Length = 946 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 2/111 (1%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 + +++ L V R + ++ + A F+L GA +A+ +V + VF L Sbjct: 593 VVISVAALLAVGARRRMTAMLLVGMTGYGTAMFFVLYGAPDLALTQFLVETVTIAVFVL- 651 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 ++ P +L I+ + A +S Sbjct: 652 -VLRRLPKRFSVRPLWSSRWLRRGIGAIVGLTVAGLAVAAATARHARSISE 701 >gi|156544413|ref|XP_001607522.1| PREDICTED: similar to ENSANGP00000021441 [Nasonia vitripennis] Length = 397 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 17/23 (73%) Query: 148 ISGFILLLSMIGAIVLMLRHRRD 170 I+ LLL++IGAI+++L RR Sbjct: 351 IASIFLLLAIIGAILILLGKRRH 373 >gi|119360397|ref|YP_913261.1| NADH dehydrogenase subunit 6 [Rhodeus ocellatus kurumeus] gi|119224937|dbj|BAF41322.1| NADH dehydrogenase subunit 6 [Rhodeus ocellatus kurumeus] Length = 173 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 42/113 (37%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +L I+ V + P ++ L+ A G+ + G F++++ ++Y+G Sbjct: 2 TYFVFLLMVALILGLIAVASNPTPYFAALGLVVAAGVGCGILIGSGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + A + F ++ + + S Sbjct: 62 GMLVVFAYSAALAAEPFPEAWGSRSVLFYVLVYVVGVVLAAGSLWGGWYEGSW 114 >gi|5835790|ref|NP_008599.1|ND6_15063 NADH dehydrogenase subunit 6 [Carassius auratus] gi|51235016|ref|YP_063506.1| NADH dehydrogenase subunit 6 [Carassius auratus x Cyprinus carpio] gi|52221022|ref|YP_087042.1| NADH dehydrogenase subunit 6 [Carassius carassius] gi|55338290|ref|YP_133904.1| NADH dehydrogenase subunit 6 [Carassius auratus x Cyprinus carpio x Carassius cuvieri] gi|56912179|ref|YP_173347.1| NADH dehydrogenase subunit 6 [Carassius auratus auratus] gi|189095554|ref|YP_001936261.1| NADH dehydrogenase subunit 6 [Carassius cuvieri] gi|254033657|ref|YP_003058376.1| NADH dehydrogenase subunit 6 [natural gynogenetic Carassius auratus red var.] gi|261866649|ref|YP_003264302.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama amblycephala triploid hybrid] gi|261866677|ref|YP_003264328.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama amblycephala pentaploid hybrid] gi|296940263|ref|YP_003667945.1| NADH dehydrogenase subunit 6 [Carassius gibelio] gi|323481947|ref|YP_004237294.1| NADH dehydrogenase subunit 6 [Carassius auratus ssp. 'Pingxiang'] gi|6647613|sp|O78689|NU6M_CARAU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|3288698|dbj|BAA31249.1| NADH dehydrogenase subunit 6 [Carassius auratus] gi|13516949|dbj|BAB40359.1| NADH dehydrogenase subunit 6 [Carassius cuvieri] gi|50657573|gb|AAT79577.1| NADH dehydrogenase subunit 6 [Carassius auratus x Cyprinus carpio] gi|51339773|gb|AAU00640.1| NADH dehydrogenase subunit 6 [Carassius carassius] gi|54288031|gb|AAV31466.1| NADH dehydrogenase subunit 6 [Carassius auratus x Cyprinus carpio x Carassius cuvieri] gi|56798140|dbj|BAD82940.1| NADH dehydrogenase subunit 6 [Carassius auratus auratus] gi|146142369|gb|ABQ01632.1| NADH dehydrogenase subunit 6 [Carassius auratus] gi|251765228|gb|ACT15383.1| NADH dehydrogenase subunit 6 [natural gynogenetic Carassius auratus red var.] gi|260595485|gb|ACX46740.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama amblycephala triploid hybrid] gi|260595499|gb|ACX46753.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama amblycephala pentaploid hybrid] gi|262211494|gb|ACY35582.1| NADH dehydrogenase subunit 6 [Carassius auratus auratus] gi|262211508|gb|ACY35595.1| NADH dehydrogenase subunit 6 [Carassius auratus auratus] gi|262211522|gb|ACY35608.1| NADH dehydrogenase subunit 6 [Carassius auratus auratus] gi|268373362|gb|ACZ03935.1| NADH dehydrogenase subunit 6 [Carassius gibelio] gi|269849172|gb|ACZ49740.1| NADH dehydrogenase subunit 6 [Carassius gibelio] gi|270301403|gb|ACZ69583.1| NADH dehydrogenase subunit 6 [Carassius auratus x Cyprinus carpio] gi|311087983|gb|ADP68061.1| NADH dehydrogenase subunit 6 [Carassius auratus x Megalobrama amblycephala pentaploid hybrid] gi|322506161|gb|ADX01617.1| NADH dehydrogenase subunit 6 [Carassius auratus ssp. 'Pingxiang'] gi|326320988|gb|ADZ53489.1| NADH dehydrogenase subunit 6 [Carassius gibelio] gi|326321002|gb|ADZ53502.1| NADH dehydrogenase subunit 6 [Carassius gibelio] Length = 173 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V +F E R LG + +L L+ + Sbjct: 60 LGGMLV--VFAYSAALAAEPYPEAWGSRSVLGYVLVYLLGVGLVAGFFWGGWYEGSW 114 >gi|327493029|ref|YP_004347977.1| NADH dehydrogenase subunit 6 [Arothron manilensis] gi|327392516|dbj|BAK09949.1| NADH dehydrogenase subunit 6 [Arothron manilensis] Length = 173 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 42/108 (38%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P + SL+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + ++GI+ ++ F +S Sbjct: 67 FAYSAALAAEPYPETLGSWPVLASMLMYLGIVVLVFVLFLGGFGEYSW 114 >gi|257062395|gb|ACV40213.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ +VY Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|281308342|gb|ADA58319.1| NADH dehydrogenase subunit 6 [Ictinia mississippiensis] Length = 172 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFILLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|194214495|ref|XP_001490114.2| PREDICTED: similar to mCG21813 [Equus caballus] Length = 1598 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 13/127 (10%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMIT--LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92 L+ A +++ G F +V+Y +V FLF + + + E R + F Sbjct: 603 LVVAMFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYE-WWRRILKYF 661 Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK------VLYTQYAYPL 146 S I + + + F F + + K +E++G L+T+ P Sbjct: 662 WMSVVIYTMLVLIFIYTYQFENFPGLWQ-NMTGLKREKLEDLGLKQFTVAELFTRIFIP- 719 Query: 147 EISGFIL 153 + F+L Sbjct: 720 --TSFLL 724 >gi|148543113|ref|YP_001260510.1| NADH dehydrogenase subunit 6 [Ammotragus lervia] gi|126742207|gb|ABO27126.1| NADH dehydrogenase subunit 6 [Ammotragus lervia] Length = 175 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMMYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGAFVTGLLMEFFMV 104 >gi|76009048|gb|ABA38986.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis costaricensis] Length = 171 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPAAWGDWR 86 >gi|291612440|ref|YP_003540908.1| NADH dehydrogenase subunit 6 [Leptodeira septentrionalis polysticta] gi|189164528|gb|ACD77460.1| NADH dehydrogenase subunit 6 [Leptodeira septentrionalis polysticta] Length = 166 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 6/126 (4%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L F + M + ++ + P + V +L+ +LLG FVA++ +VY+G Sbjct: 9 LVFVILGVMVLGAAVV------PYHGVVALMGVSFFCCVFMVLLGRTFVALVVYIVYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 +IV F + + + +++V + F+ F+ ++ +V+ L L Sbjct: 63 LIVVFSYCVSVEKDEVDVRGVGMLKYFVVFMFVLVVFILWWGVMGGILVYEDWENLVCLE 122 Query: 126 FKGNNV 131 G +V Sbjct: 123 VNGGSV 128 >gi|190349508|ref|YP_001974720.1| NADH dehydrogenase subunit 6 [Arothron firmamentum] gi|89885674|dbj|BAE86954.1| NADH dehydrogenase subunit 6 [Arothron firmamentum] Length = 173 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 43/108 (39%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P + SL+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + ++GI+A ++ F ++ Sbjct: 67 FAYSAALAAEPYPETLGSWPVLASMLMYLGIVALVFVLFLGGFGEYTW 114 >gi|119365179|ref|YP_913430.1| NADH dehydrogenase subunit 6 [Barbonymus gonionotus] gi|119225119|dbj|BAF41491.1| NADH dehydrogenase subunit 6 [Barbonymus gonionotus] Length = 173 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 3/117 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ F L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFVLLMAL-VVGLVAVASNPTPYFAAFGLVVAAGVGCGVLVGHGGTFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V +F E R LG + +L L+ + Sbjct: 60 LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVGLVAVFFWGGWYEGSW 114 >gi|84488690|ref|YP_448892.1| NADH dehydrogenase subunit 6 [Testudo kleinmanni] gi|67005717|gb|AAY62509.1| NADH dehydrogenase subunit 6 [Testudo kleinmanni] Length = 174 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y VFSL+ G+ + +G FV++I ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +V F + + AEP I L + V +S G Sbjct: 64 LVIFAYSCAL------AAEPYPASWGTLDVVIYGLCYLICVLWLMLTDYSWWG 110 >gi|55378235|ref|YP_136085.1| hypothetical protein rrnAC1453 [Haloarcula marismortui ATCC 43049] gi|55230960|gb|AAV46379.1| unknown [Haloarcula marismortui ATCC 43049] Length = 132 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 17/91 (18%) Query: 94 GSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT------------- 140 GSF G+ A L V + + + +++G L+ Sbjct: 11 GSFVAGLAAIALFVVLGAVFMGVSFPAPAGFGEGAAITKSLGAALFDIAPSAIMGEGETA 70 Query: 141 ----QYAYPLEISGFILLLSMIGAIVLMLRH 167 + EI +L+ +++GA++L R Sbjct: 71 VPGEGFLVAFEIIDIVLVAALVGAVMLARRE 101 >gi|325126661|ref|YP_004285813.1| NADH dehydrogenase subunit 6 [Leptotila verreauxi] gi|304365585|gb|ADM26389.1| NADH dehydrogenase subunit 6 [Leptotila verreauxi] Length = 173 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 41/84 (48%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + + Sbjct: 21 SNPSPYYGVVGLVVASVTGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPE 80 Query: 84 AEPRKKRGFLGSFFIGILAAELIV 107 A + G F+ ++ ++V Sbjct: 81 AWGDWRVVGYGLGFVLVVMIGMVV 104 >gi|281308284|gb|ADA58290.1| NADH dehydrogenase subunit 6 [Buteo lagopus] Length = 170 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|157778255|gb|ABV70424.1| NADH dehydrogenase subunit 6 [Bos taurus] Length = 175 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + M + LG+F G+L +V Sbjct: 61 LGGMMVVFGYTTAMATEQYPEI-WLSNKVVLGAFVTGLLMEFFMV 104 >gi|163634472|gb|AAO85229.2| NADH dehydrogenase subunit 6 [Buteo auguralis] gi|281308262|gb|ADA58279.1| NADH dehydrogenase subunit 6 [Buteo brachyurus] Length = 172 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|82395883|gb|ABB72511.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] gi|327555493|gb|AEB01107.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] Length = 175 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 41/73 (56%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G Sbjct: 3 ITFFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLD 78 ++V F F + D Sbjct: 63 LLVVFAFCVGFTD 75 >gi|29569558|gb|AAO85247.1| NADH dehydrogenase subunit 6 [Buteo nitidus costaricensis] gi|281308294|gb|ADA58295.1| NADH dehydrogenase subunit 6 [Buteo nitidus] gi|281308296|gb|ADA58296.1| NADH dehydrogenase subunit 6 [Buteo nitidus] Length = 172 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLFLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|328671406|gb|AEB26574.1| NADH dehydrogenase subunit 6 [Nannoperca obscura] Length = 173 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 39/98 (39%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + ++ Sbjct: 17 IAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSTALVAE 76 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + ++ ++ ++ + S Sbjct: 77 PYPESWGSRPVAVYMVMYLAVVTVASVLLGGGWYETSW 114 >gi|71658048|ref|YP_272000.1| NADH dehydrogenase subunit 6 [Cobitis sinensis] gi|44887487|gb|AAS48076.1| NADH dehydrogenase subunit 6 [Cobitis sinensis] Length = 175 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F L + I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYLVFLLLMAL-IVGLVAVASNPAPYFAALGLVVAAGVGCGVLISHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + + + R G++ + +G+ C + Sbjct: 60 LGGMLVVFAYSTALAAEPFPESWGDRSVLGYVLVYLVGVGLVMSFFCEGWY 110 >gi|9695371|ref|NP_037593.1| NADH dehydrogenase subunit 6 [Paralichthys olivaceus] gi|6683105|dbj|BAA89044.1| NADH dehydrogenase subunit-6 [Paralichthys olivaceus] gi|225690868|gb|ACO06118.1| NADH dehydrogenase subunit 6 [Scophthalmus maximus] Length = 173 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + L F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFVMCLVLFCLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLIGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + + E R + S+ +G++ ++ + Sbjct: 62 GMLVVFAYSAALAAEPYPETWGSRPVMVYSASYMVGVVLVSVLFWGGWY 110 >gi|296387151|ref|ZP_06876650.1| hypothetical protein PaerPAb_03409 [Pseudomonas aeruginosa PAb1] Length = 258 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 22/136 (16%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFL 93 L ++ +++G F+ T+ V V A+ FI++ + I ++ G+L Sbjct: 86 YLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALA-SIAFIVIAVMIGVQRLHDLGWSGWL 144 Query: 94 GSF----FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 F+G + L++ + G V+ + + Sbjct: 145 WLLNFVPFVGSVFGILMLVLPGSTGANRYG--PPPPANSTGVKVLASL------------ 190 Query: 150 GFILL--LSMIGAIVL 163 ILL + +I AI L Sbjct: 191 -IILLPIVGIIAAIAL 205 >gi|227834044|ref|YP_002835751.1| hypothetical protein cauri_2222 [Corynebacterium aurimucosum ATCC 700975] gi|262183470|ref|ZP_06042891.1| hypothetical protein CaurA7_05709 [Corynebacterium aurimucosum ATCC 700975] gi|227455060|gb|ACP33813.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975] Length = 438 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 65/167 (38%), Gaps = 11/167 (6%) Query: 9 YLFSFMAIISSFLV---VTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 Y F+ A+ ++ + + +V LI F + L L +F A ++ + Y Sbjct: 189 YFFTTEAVAAAGVADPSEFSSGYVAAVLFLIPGFPLFSALIDLARFDFEAGLSRLTYALT 248 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 VI F + ++ E+ + +++ AA + + +F++ + + Sbjct: 249 VITAATFTVALVSWTTELTPEPGIPDYAPVWYLAAAAASFLGISGFAFLFNSSRRMVLVA 308 Query: 126 FKGNNVENIGKVLY-----TQYAYPLEISGFILLLSMIGAIVLMLRH 167 V N+ +++ T Y +G L++ ++GA+ H Sbjct: 309 AAVGTVANLVRLVLIGVGATAYVGAF--AGG-LIVGLLGAVASTRAH 352 >gi|195947080|dbj|BAG68444.1| NADH dehydrogenase subunit 6 [Varanus rudicollis] Length = 179 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 ++ LV + +P++ V SL+ + A G+ ++ G F++++ +VY+G +IV F + + Sbjct: 15 LVVCGLLVGSNPSPVFGVVSLVLLALVACGVLVVCGYSFLSLVLFLVYLGGMIVVFAYSV 74 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 M +E + + F S L L V M+ + Sbjct: 75 SM------SSELQPEAWFGWSVLPFFLGGSLGVVFVVVMILGGD 112 >gi|190349424|ref|YP_001974603.1| NADH dehydrogenase subunit 6 [Platichthys stellatus] gi|125657056|gb|ABN48623.1| NADH dehydrogenase subunit 6 [Platichthys stellatus] Length = 173 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFVMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + S + + V + + + E S + Sbjct: 62 GMLVVFAYSAAL------AAEPHPESWGSWSVMVYGVVYVAGVVLVSGLFWGGWYESSWV 115 Query: 125 VFK 127 + Sbjct: 116 LVD 118 >gi|52547317|ref|YP_087190.1| NADH dehydrogenase subunit 6 [Monodelphis domestica] gi|52345260|emb|CAD48211.1| NADH dehydrogenase subunit 6 [Monodelphis domestica] Length = 166 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 2/117 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M M +F + S + I + +P+Y SL+ + + + F+ ++ + Sbjct: 1 MTMMMIF--IISLLLIFGFVAFSSKPSPVYGGLSLVASGGLGCVMVVNFEDSFLGLVVFL 58 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VY+G ++V F + M + F F+ ++ N V S Sbjct: 59 VYLGGMLVVFGYTAAMATEEYPETWVGNILAFCMLLFVLLMEIMWYFIFGNTYVDSN 115 >gi|29569542|gb|AAO85239.1| NADH dehydrogenase subunit 6 [Buteo galapagoensis] gi|29569544|gb|AAO85240.1| NADH dehydrogenase subunit 6 [Buteo swainsoni] gi|29569546|gb|AAO85241.1| NADH dehydrogenase subunit 6 [Buteo swainsoni] gi|73666523|gb|AAZ79934.1| NADH dehydrogenase subunit 6 [Buteo swainsoni X Buteo lagopus] gi|281308270|gb|ADA58283.1| NADH dehydrogenase subunit 6 [Buteo galapagoensis] gi|281308272|gb|ADA58284.1| NADH dehydrogenase subunit 6 [Buteo galapagoensis] gi|281308322|gb|ADA58309.1| NADH dehydrogenase subunit 6 [Buteo swainsoni] gi|281308324|gb|ADA58310.1| NADH dehydrogenase subunit 6 [Buteo swainsoni] Length = 172 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|5836042|ref|NP_008801.1|ND6_15103 NADH dehydrogenase subunit 6 [Hippopotamus amphibius] gi|6647640|sp|Q9ZZY0|NU6M_HIPAM RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|4127875|emb|CAA09439.1| NADH6 [Hippopotamus amphibius] Length = 175 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +I + +PIY LI + G+ L G F+ ++ +VY Sbjct: 1 MMTYVVFILSIVFVIGLIGSPSKPSPIYGGLGLIVSGGAGCGMVLNFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G++ L V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFLLGLMMEFLAVL 105 >gi|327492623|ref|YP_004347520.1| NADH dehydrogenase subunit 6 [Sphoeroides parvus] gi|327392306|dbj|BAK09754.1| NADH dehydrogenase subunit 6 [Sphoeroides parvus] Length = 173 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 43/108 (39%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P + SL+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLVLGLVAVASNPSPYFGALSLVVVAGFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + A + G++A ++ + +S Sbjct: 67 FAYSAALAAEPYPEALGSWPVLVSMLMYSGVVALVFVMFFGGWGEYSW 114 >gi|226304992|ref|YP_002764950.1| Na(+)/H(+) antiporter subunit A/B [Rhodococcus erythropolis PR4] gi|226184107|dbj|BAH32211.1| putative Na(+)/H(+) antiporter subunit A/B [Rhodococcus erythropolis PR4] Length = 945 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 13/169 (7%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 + + M I ++ +RN + SV + LF L GA +A+ +V + Sbjct: 599 FTIALMMISAAIAATLMRNRLASVILVGLTGYGCGVLFALHGAPDLALTQFLV---ETLT 655 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-----LSR 123 +F++++ EV E + + + + + F + L Sbjct: 656 LVIFVLVLRKFPAEVDESKAIGFKWPRAALAVAVGITVTTIAAFATNARNTRPIYELLPD 715 Query: 124 LVFKGNNVENIGKVLYTQ---YAYPLEISGFILLLSMIGAIVLMLRHRR 169 + N +N+ VL + EIS +LL++ G L+ R+RR Sbjct: 716 AAYDLGNGKNVVNVLLVDIRAWDTLGEIS--VLLVAATGVASLVFRNRR 762 >gi|327555479|gb|AEB01094.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] Length = 175 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 41/73 (56%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G Sbjct: 3 ITFFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLD 78 ++V F F + D Sbjct: 63 LLVVFAFCVGFTD 75 >gi|280978124|ref|YP_003345072.1| NADH dehydrogenase subunit 6 [Coloconger cadenati] gi|271280668|dbj|BAI53443.1| NADH dehydrogenase subunit 6 [Coloconger cadenati] Length = 172 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 2/107 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +LF FM ++ V + P ++ L+ A G+ G FV+++ ++Y+G Sbjct: 2 TYFIFLFMFMLVLGIIGVASNPAPYFAALGLVLAAGGGCGILAGYGGSFVSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 ++V +F E LG + + V Sbjct: 62 GMLV--VFAYSAALAAEPYPEGWGDWAVLGRVVGCFMLCFIGVFFGG 106 >gi|158420581|ref|YP_001527644.1| NADH dehydrogenase subunit 6 [Taenia saginata] gi|55793082|gb|AAV65592.1| NADH dehydrogenase subunit 6 [Taenia saginata] Length = 150 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 4/117 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV+++L F + + S ++ Y V ++ A ++ +L+ G + +++ + Sbjct: 1 MVLEALVTSYFFVLLLFS----LSSHCVYYCVLLVVNALISCLICYLVYGFSWYSLVFCL 56 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVG V + F+F+ + D + + F+ L + C + FS+ Sbjct: 57 VYVGGVYILFIFVSVFNPNDSFPIYHKVGESNVVLCFVVGLLCVCLFCGLVNVEFSS 113 >gi|229918857|ref|YP_002887518.1| NADH dehydrogenase subunit 6 [Istiophorus platypterus] gi|229619821|dbj|BAH58303.1| NADH dehydrogenase subunit 6 [Istiophorus platypterus] Length = 173 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 13/113 (11%), Positives = 40/113 (35%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLILLSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + + ++ + + + S Sbjct: 62 GMLVVFAYSAALAAEPYPETWGSRPVVAYMVVYMVGVVLVSGLFWGGWYESSW 114 >gi|229918843|ref|YP_002887505.1| NADH dehydrogenase subunit 6 [Makaira indica] gi|229919627|ref|YP_002887544.1| NADH dehydrogenase subunit 6 [Tetrapturus audax] gi|229922371|ref|YP_002887557.1| NADH dehydrogenase subunit 6 [Tetrapturus angustirostris] gi|229619807|dbj|BAH58290.1| NADH dehydrogenase subunit 6 [Makaira indica] gi|229619892|dbj|BAH58251.1| NADH dehydrogenase subunit 6 [Tetrapturus audax] gi|229619906|dbj|BAH58264.1| NADH dehydrogenase subunit 6 [Tetrapturus angustirostris] Length = 173 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 13/113 (11%), Positives = 40/113 (35%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLILLSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + + ++ + + + S Sbjct: 62 GMLVVFAYSAALAAEPYPETWGSRPVVMYMVVYMVGVVLVSGLFWGGWYESSW 114 >gi|226463827|ref|YP_002727934.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon] gi|124055174|gb|ABM89784.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon] Length = 169 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 V + +P + SL A V AG+ L + FV+++ ++VY+G ++V F++ + M Sbjct: 15 GVASNPSPYFGGVSLALASVFGAGVVAGLSSTFVSLVLMLVYLGGMLVVFVYSVAMSSDM 74 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 A + + F+G L + Sbjct: 75 YPEAWGNRSVFLYVAGFLGYLFCLWWYMEWKW 106 >gi|119360551|ref|YP_913456.1| NADH dehydrogenase subunit 6 [Labeo senegalensis] gi|119225147|dbj|BAF41517.1| NADH dehydrogenase subunit 6 [Labeo senegalensis] Length = 173 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V +F E R LG + +L L+ + Sbjct: 60 LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVSLVAGLFWGGWYEGSW 114 >gi|8573075|ref|NP_059467.1| NADH dehydrogenase subunit 6 [Paragonimus westermani] gi|8132793|gb|AAF73395.1|AF219379_9 NADH dehydrogenase subunit 6 [Paragonimus westermani] Length = 150 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F F ++I V +Y + L A + L+ +LG + ++ +VYVG Sbjct: 3 VVFLSLYFSSLIGFSFV--SHPVVYCILLLTGALGISGYLYTVLGLSWYLVLFCLVYVGG 60 Query: 66 VIVFFLFI 73 + V F+F+ Sbjct: 61 ICVLFIFV 68 >gi|15987287|ref|NP_387497.1|ND6_15796 NADH dehydrogenase subunit 6 [Buteo buteo] gi|15963589|gb|AAL11093.1|AF380305_13 NADH dehydrogenase subunit 6 [Buteo buteo] gi|163634470|gb|AAO85224.2| NADH dehydrogenase subunit 6 [Buteo japonicus japonicus] gi|163634486|gb|AAO61761.2| NADH dehydrogenase subunit 6 [Buteo hemilasius] gi|281308268|gb|ADA58282.1| NADH dehydrogenase subunit 6 [Buteo buteo] gi|281308274|gb|ADA58285.1| NADH dehydrogenase subunit 6 [Buteo hemilasius] gi|281308276|gb|ADA58286.1| NADH dehydrogenase subunit 6 [Buteo hemilasius] gi|281308316|gb|ADA58306.1| NADH dehydrogenase subunit 6 [Buteo rufinus] gi|281308380|gb|ADA58338.1| NADH dehydrogenase subunit 6 [Buteo rufinus] Length = 172 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|2459599|gb|AAB71751.1| NADH dehydrogenase subunit 6 [Cacomantis flabelliformis] Length = 148 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + V + +P Y V L+ A V G L LG FV+++ ++Y+G ++V F++ + + Sbjct: 2 LGGLAVASNPSPYYGVVGLVLASVVGCGWLLSLGVSFVSLVLFMIYLGGMLVVFVYSVSL 61 Query: 77 LDIDIEVA 84 A Sbjct: 62 AADPFPEA 69 >gi|238550549|gb|ACR44403.1| NADH dehydrogenase subunit 6 [Arborophila gingica] Length = 173 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ ++Y+G Sbjct: 2 TYFVLFLGAGFVLGILAVASNPSPYYGVVGLVLASVMGCGWLVNLGVSFVSLALFMIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR 86 >gi|289183145|ref|YP_003457133.1| NADH dehydrogenase subunit 6 [Sladenia gardineri] gi|288908719|dbj|BAI76979.1| NADH dehydrogenase subunit 6 [Sladenia gardineri] Length = 173 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 41/110 (37%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF I+ +V + +P + L+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLVGVILGMVVVASNPSPFFGALGLVVVAGLGCGVLMGHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 F + + + F S ++ + + S + Sbjct: 67 FAYSAALAAEPFPEGLGSRPVAFSVSVYLAGVGLASSFFWGGWYEGSWQS 116 >gi|284178621|ref|YP_003406753.1| NADH dehydrogenase subunit 6 [Larimichthys polyactis] gi|220961444|gb|ACL93173.1| NADH dehydrogenase subunit 6 [Larimichthys polyactis] Length = 172 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 6/106 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ + G F+++I ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVVVAGLGCGILVGHGGHFLSLILFLIYLGGMLVVFAYSAAL----- 73 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 AEP + S + IL + V + + + E S + Sbjct: 74 -AAEPYPESWGSRSVMVYILVYVVGVVMVSGLFWGGWYETSWVPVD 118 >gi|215511504|gb|ACJ67951.1| NADH dehydrogenase subunit 6 [Fundulus grandis] Length = 173 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 2/115 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++F LFS + +++ V + +P ++ L+ G+ + G F+++I ++Y Sbjct: 2 MYMMYFLLFSLVLGLAA--VASNPSPYFAALGLVVVAGIGCGVLIWHGGGFLSLILFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + L ++ + + +S+ S Sbjct: 60 LGGMLVVFAYSAALAAEPYPEGWGSWPVLGLMLGYLLGVGGVGTLFSSSMYDGSW 114 >gi|187250387|ref|YP_001874812.1| NADH dehydrogenase subunit 6 [Uncia uncia] gi|145558806|gb|ABP73330.1| NADH dehydrogenase subunit 6 [Uncia uncia] Length = 175 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 3/108 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+M +F + S + ++S + +PIY F LI A G+ L G F+ ++ + Sbjct: 1 MMMYIVF--ILSTIFVVSFVSFSSKPSPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFL 58 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +Y+G ++V F + M A K LG+F G+LA L C Sbjct: 59 IYLGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGAFITGVLAELLTAC 105 >gi|119360340|ref|YP_913508.1| NADH dehydrogenase subunit 6 [Gymnocypris przewalskii] gi|119225203|dbj|BAF41569.1| NADH dehydrogenase subunit 6 [Gymnocypris przewalskii] Length = 173 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M L F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYLMFVLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVSHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V +F E R LG I ++ L + Sbjct: 60 LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVVIYLVMTSLAAGLLWGGWYEGSW 114 >gi|28975367|gb|AAO61760.1| NADH dehydrogenase subunit 6 [Buteo refectus] gi|281308264|gb|ADA58280.1| NADH dehydrogenase subunit 6 [Buteo refectus] gi|281308266|gb|ADA58281.1| NADH dehydrogenase subunit 6 [Buteo refectus] Length = 172 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|26284407|gb|AAN84908.1|AF460846_12 NADH subunit 6 [Galeopterus variegatus] Length = 174 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 44/104 (42%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L S + ++ + +PIY L+ + G+ + LG F+ ++ +VY+G ++V Sbjct: 6 FLLSVIFVVGFVGFSSKPSPIYGGVGLLVSGGVGCGIVVSLGGSFLGLMVFLVYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + M + A S ++ +++ N+ Sbjct: 66 VFGYTTAMAIEEYPEAWGSNVVVLGASLLGLVMELLVVLWMVNY 109 >gi|325126702|ref|YP_004285851.1| NADH dehydrogenase subunit 6 [Labeo bata] gi|325053254|dbj|BAJ83456.1| NADH dehydrogenase subunit 6 [Labeo bata] Length = 173 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V +F E R LG + +L L+ + Sbjct: 60 LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVGLVAGFFWGGWYEGSW 114 >gi|222616447|gb|EEE52579.1| hypothetical protein OsJ_34868 [Oryza sativa Japonica Group] Length = 864 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 24/172 (13%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSL--IFAFVNAAGLFLLLGA---EFVAMIT 58 Q F + +IS + S + + + LF L+G+ E + + Sbjct: 146 QEFGFVRIGLVYLISGLGGSLM-----SALFIRSSISVGASGALFGLIGSMLSELITNWS 200 Query: 59 LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS-- 116 L A ++ +F+I ++++ + + +G G L ++ F + Sbjct: 201 LYANKVAALLTLVFVI-VVNLALGILPRVDNFAHIGGLISGFLLGFVMFIRPQFAWINQR 259 Query: 117 --AEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 A G+ V + + Y + +L++ AIVL+LR Sbjct: 260 RVAPGQQPAPVKRKHKTYQ--------YILW-LAAAIMLIVGFTVAIVLLLR 302 >gi|270267548|ref|YP_003331234.1| NADH dehydrogenase subunit 6 [Eothenomys chinensis] gi|215882409|gb|ACJ70831.1| NADH dehydrogenase subunit 6 [Eothenomys chinensis] Length = 174 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 Y S + + +PIY LI + + L G F+ ++ ++Y+G + Sbjct: 4 LIYFLSLLICMGCLGTSLKPSPIYGGLCLIISGCSGCLAVLGFGGSFLGLMVFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +V F + M AE + +G+L + + V Sbjct: 64 LVVFGYTTAM------SAEEYPETWVSSWLVLGVLVMSVFMEVGMLFV 105 >gi|325282538|ref|YP_004255079.1| NADH dehydrogenase (quinone) [Deinococcus proteolyticus MRP] gi|324314347|gb|ADY25462.1| NADH dehydrogenase (quinone) [Deinococcus proteolyticus MRP] Length = 827 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 1/106 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S L + + + V RN + +V + ++ FL A +A+ +++ Sbjct: 585 SFSLILIVTLLVAGAIGVSLSRNRLTAVVLMGLTGFGSSAAFLAFRAPDLALTQMIIETV 644 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 V + FL + +A R + + + S Sbjct: 645 TV-ILFLLAFRYMPGIRALARTRTQYLVDLGIALSAGVGIMAYLLS 689 >gi|161824345|gb|ABX79726.1| NADH dehydrogenase subunit 6 [Mus musculus] Length = 172 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + ++ + + IY LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FVLSSLFLVGCLGLALKPSLIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + M + LG +G++ ++C N+ Sbjct: 66 VFGYTTAMATEEYPETWG-SNWLILGFLVLGVIMEVFLICVLNY 108 >gi|160902053|ref|YP_001567634.1| hypothetical protein Pmob_0577 [Petrotoga mobilis SJ95] gi|160359697|gb|ABX31311.1| hypothetical protein Pmob_0577 [Petrotoga mobilis SJ95] Length = 258 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 S+ F S + + S +++ ++ + + V + LF LL A VA + + + G Sbjct: 4 SIIFLFLSLIVL--SLYILSQKSYVNVIIGYGVFSVATSVLFFLLNAPDVAFVEITI--G 59 Query: 65 AVIVFFLFIIMM 76 A V F+++I + Sbjct: 60 AAFVIFIYLIAI 71 >gi|52551373|ref|YP_089627.1| NADH dehydrogenase subunit 6 [Uraeotyphlus cf. oxyurus MW-212] gi|42406160|gb|AAS13755.1| NADH dehydrogenase subunit 6 [Uraeotyphlus cf. oxyurus MW-212] Length = 165 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 41/95 (43%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F ++ V + +P ++ F L+ + + + + F++++ ++Y+G ++V F + Sbjct: 10 FGLVLGLVGVASNPSPYFAAFGLVISSAAGCLILVTVELSFLSLVFFLIYLGGMLVVFAY 69 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 M A ++ + ++ L++ Sbjct: 70 SAAMAAEPYPEAWGGVSIFYVMGYICVLVLGSLMI 104 >gi|16357344|ref|NP_443643.1| NADH dehydrogenase subunit 6 [Antigonia capros] gi|16267223|dbj|BAB70350.1| NADH dehydrogenase subunit 6 [Antigonia capros] Length = 173 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 11/122 (9%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 I V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + Sbjct: 12 LIFGLIAVASNPSPYFAALGLVIVAGLGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSA 71 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 + + +A +++ + ++ S F VE + Sbjct: 72 ALAAEPYPESWGSWP-----------VAMSMLIYLAGVVLVSGLFWGGWYEFSWTTVEEL 120 Query: 135 GK 136 G+ Sbjct: 121 GE 122 >gi|71402426|ref|XP_804128.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70866932|gb|EAN82277.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 898 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 30/156 (19%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + S+ F+ + + + ++ R P SV N G+ L L F+ ++ Sbjct: 668 LSSVVFFFALTVFLRKTLGTISCRAPWRSVSY--TTMFNLDGIMLTLFGYFMLVLL---- 721 Query: 63 VGAVIVFFLFIIMMLDIDI---------------EVAEPRKKRGFLGSFFIGILAAELIV 107 F F ++ E R + + IGI A + Sbjct: 722 -----ATFAFALVYSRWHTREEIEAHVQEFQALPEFWTFRNTTKVVAVYVIGIGQALCLG 776 Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143 ++ + + IG VLY + Sbjct: 777 YLMKLWIYRTSNVVWNWEASPS----IGAVLYMTFL 808 >gi|317097355|ref|YP_004123555.1| NADH dehydrogenase subunit 6 [Cynoglossus abbreviatus] gi|254763724|gb|ACT80254.1| NADH dehydrogenase subunit 6 [Cynoglossus abbreviatus] Length = 173 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 39/96 (40%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + Y + ++ VV +P + +L+ A + ++ G F+A++ +VY+G Sbjct: 2 TFILYTALLVMVVGLGAVVAHPSPYFGSLTLVVVSGAACVVLIMYGGTFLALVMFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI 100 ++V F + + + ++GI Sbjct: 62 GMLVVFAYTTALAADSFPYTLTYGDVMLYWALYMGI 97 >gi|288903190|ref|YP_003433801.1| NADH dehydrogenase subunit 6 [Sebastiscus marmoratus] gi|284468532|gb|ADB90326.1| NADH dehydrogenase subunit 6 [Sebastiscus marmoratus] Length = 173 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TYIMSLFLIGLVLGLVAVASNPSPYFAALRLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + G ++ + V ++ + + E S + Sbjct: 62 GMLVVFAYSAAL------AAEPYPESWVSGPVVGDMVMYLVGVGVASSVFWGGWYESSWV 115 Query: 125 VFK 127 Sbjct: 116 PAD 118 >gi|164454838|dbj|BAF96963.1| NADH dehydrogenase subunit 6 [Mammuthus primigenius] Length = 175 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F + S + ++ + +P Y SLI + G+ + G F+ ++ +VY Sbjct: 1 MMYIVF-VMSVLYVVGFIGFSSKPSPDYGGMSLIVSGGLGCGIIMSSGGSFLGLVVFLVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V F + I M + ++ +IV Sbjct: 60 LGGMMVVFGYTIAMATEEYPETWGSNVVVLSAFLVGLLMEIFMIVWLFT 108 >gi|119360245|ref|YP_913313.1| NADH dehydrogenase subunit 6 [Notemigonus crysoleucas] gi|119224993|dbj|BAF41374.1| NADH dehydrogenase subunit-6 [Notemigonus crysoleucas] Length = 173 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 1/115 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFAFLLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGVLVSCGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + A + ++ + V + S Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLIYLAGVVLMAGVFWGGWYEGSW 114 >gi|29569548|gb|AAO85242.1| NADH dehydrogenase subunit 6 [Buteo albonotatus albonotatus] gi|281308248|gb|ADA58272.1| NADH dehydrogenase subunit 6 [Buteo albonotatus] gi|281308250|gb|ADA58273.1| NADH dehydrogenase subunit 6 [Buteo albonotatus] Length = 172 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|12667717|ref|NP_075406.1| NADH dehydrogenase subunit 6 [Thryonomys swinderianus] gi|12657508|emb|CAC27810.1| NADH dehydrogenase subunit 6 [Thryonomys swinderianus] Length = 170 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y S +I +P+Y +LI + + L G F+ ++ +VY+G ++V Sbjct: 7 YFLSVAFVICYIGFSVKPSPVYGGLALIVSGGVGCFIILSYGGSFLGLMVFLVYLGGMMV 66 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 F + M + + +F ++ +I Sbjct: 67 VFGYTTAMATDQYPDSWGSNVIIWSATFMGLLMELLMIY 105 >gi|29569524|gb|AAO85230.1| NADH dehydrogenase subunit 6 [Buteo lagopus kamtschatkensis] gi|281308282|gb|ADA58289.1| NADH dehydrogenase subunit 6 [Buteo lagopus] gi|281308310|gb|ADA58303.1| NADH dehydrogenase subunit 6 [Buteo regalis] gi|281308312|gb|ADA58304.1| NADH dehydrogenase subunit 6 [Buteo regalis] Length = 172 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|238550536|gb|ACR44391.1| NADH dehydrogenase subunit 6 [Arborophila rufogularis] Length = 173 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG FV+++ ++Y+G ++V Sbjct: 7 FLGVGFVLGILAVASNPSPYYGVVGLVLASVMGCGWLVNLGVSFVSLVLFMIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKK 89 F++ + + A + Sbjct: 67 FVYSVSLAADPYPEAWGSWR 86 >gi|281308318|gb|ADA58307.1| NADH dehydrogenase subunit 6 [Buteo solitarius] Length = 172 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|260150977|ref|YP_003208293.1| NADH dehydrogenase subunit 6 [Lucinella divaricata] gi|116257523|gb|ABJ91106.1| NADH dehydrogenase subunit 6 [Lucinella divaricata] Length = 160 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L + + L++ +PI I A + + +V + VYVGA++V Sbjct: 2 WLVVGVLLGILSLIIYSEHPISVGLWFIMYSFMVAIWVGVEWSSYVGYLMFFVYVGALLV 61 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG 99 F ++M+ + P LG+ G Sbjct: 62 MFCMVVMLTPNPVFRVVPFVGLFPLGNSLAG 92 >gi|16356951|ref|NP_443617.1| NADH dehydrogenase subunit 6 [Myripristis berndti] gi|16267178|dbj|BAB70311.1| NADH dehydrogenase subunit 6 [Myripristis berndti] Length = 169 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-IIMMLDID 80 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + + + Sbjct: 15 VASNPSPYFAALGLVAVAGLGCGVLVGYGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPH 74 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 E R G+ + IG+ AA + Sbjct: 75 PESWGSRSVAGYFLLYLIGVFAASSYFWGGWY 106 >gi|296236327|ref|XP_002763279.1| PREDICTED: tetraspanin-15-like [Callithrix jacchus] Length = 304 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 9/91 (9%) Query: 28 PIYS-VFSLIFAFVNAAGLFL--------LLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 IYS VF LI V + G++ L + F+A + +++ +G V+ FI ++ Sbjct: 25 IIYSTVFWLIGVLVLSVGIYAEVERQKYKTLESAFLAPVIILILLGVVMCMVSFIGVLAS 84 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + + + LG I L ++ Sbjct: 85 LRDNLFLLQAFMYILGICLIMELIGGVMALI 115 >gi|255563681|ref|XP_002522842.1| GDP-mannose transporter, putative [Ricinus communis] gi|223537926|gb|EEF39540.1| GDP-mannose transporter, putative [Ricinus communis] Length = 485 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 46 FLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 F+L +F A I+L+VY + V + ++ L I EP R + ++ + Sbjct: 98 FVLSSYDFNAGISLMVYQNFISVIIVSVLSFLGI--ISTEPLTWRLIKVWLPVNVIFVGM 155 Query: 106 IVCASNFMVFSAEGELSRLVFKGNNVENIGKV-LYTQY 142 +V + + + ++ L N + +G++ L++++ Sbjct: 156 LVTSMFSLKYINVAMVTVLKNVTNVITALGEMYLFSKH 193 >gi|16117422|ref|NP_395464.1| NADH dehydrogenase subunit 6 [Heterodontus francisci] gi|16030062|emb|CAC84223.1| NADH subunit 6 [Heterodontus francisci] Length = 169 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ ++ V + +P ++ L+ A GL + G F++++ ++Y+G ++V Sbjct: 2 FVMMIGLVLGLMAVASNPSPYFAALGLVVASGVGCGLLVGYGGSFMSLVLFLIYLGGMLV 61 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 F++ + P + ++ I LI S F+ Sbjct: 62 VFVYTAAL----AAEPYPESWGSWSVLLYVSIYLTGLIFVGSYFVT 103 >gi|29570625|ref|NP_818811.1| NADH dehydrogenase subunit 6 [Chanos chanos] gi|29501162|dbj|BAC67518.1| NADH dehydrogenase subunit 6 [Chanos chanos] Length = 173 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF F ++ V + P ++ L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLFGLVVGLVAVASNPAPYFAALGLVVAAGVGCGVLIGHGGLFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F + + AEP + S +L + V A + + E S +V G Sbjct: 67 FAYSAAL------AAEPFPESWVDRSVIWYVLVYLIGVVAVAGLFWGGWYESSWVVVDG 119 >gi|1589126|prf||2210305M NADH dehydrogenase:SUBUNIT=6 Length = 781 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++ Sbjct: 606 EMMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGTGCGIVLNFGGSFLGLMVFLI 665 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 Y+G ++V F + M A K L F G+LA L C Sbjct: 666 YLGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 711 >gi|255733000|ref|XP_002551423.1| chitin synthase 2 [Candida tropicalis MYA-3404] gi|240131164|gb|EER30725.1| chitin synthase 2 [Candida tropicalis MYA-3404] Length = 1108 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 29/140 (20%) Query: 30 YSVFSLIFAFVNAAGLFLL-------LGAE--------FVAMITLVVYVGAVIVFFLFII 74 Y + +++ ++ + A FL+ LGA+ ++A+I L YVG+V+ F+ Sbjct: 766 YQLVTILVSWFSLASFFLVFRILTANLGADDMNFNVGKYLAIIFLWFYVGSVVCTFVLAF 825 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR------LVFKG 128 KK + + F +L A ++ A V + +S +V Sbjct: 826 ------GNTPRGTKKFYLVIAIFFAVLMAYMMFAAIFLAVHTVTSIVSDHKTDFSIVLVF 879 Query: 129 NNVE--NIGKVLYTQYAYPL 146 N + ++ + + Y Sbjct: 880 TNTKFRDLVVSMVSTYVLYF 899 >gi|197311126|ref|YP_002154476.1| NADH dehydrogenase subunit 6 [Paratilapia polleni] gi|197304623|dbj|BAG69548.1| NADH dehydrogenase subunit 6 [Paratilapia polleni] Length = 173 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 7/126 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F F ++ V + +P ++ L+ G+ G F++++ ++Y Sbjct: 1 MVYILFMFL-FGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLAGFGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + + AEP + +LA + +C + M + E+S Sbjct: 60 LGGMLVVFAYSAAL------AAEPYPEGWGSWPVLGMMLAYVVGLCMAGGMFWGGWYEVS 113 Query: 123 RLVFKG 128 Sbjct: 114 WAPVDD 119 >gi|29569516|gb|AAO85226.1| NADH dehydrogenase subunit 6 [Buteo rufofuscus] gi|281308314|gb|ADA58305.1| NADH dehydrogenase subunit 6 [Buteo rufofuscus] Length = 172 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|29569528|gb|AAO85232.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis] gi|29569532|gb|AAO85234.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis borealis] gi|29569534|gb|AAO85235.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis borealis] gi|29569536|gb|AAO85236.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis borealis] gi|29569538|gb|AAO85237.1| NADH dehydrogenase subunit 6 [Buteo ventralis] gi|281308278|gb|ADA58287.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis] gi|281308280|gb|ADA58288.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis] Length = 172 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|5835677|ref|NP_008495.1|ND6_15043 NADH dehydrogenase subunit 6 [Artibeus jamaicensis] gi|4164485|gb|AAD05448.1| NADH dehydrogenase subunit 6 [Artibeus jamaicensis] Length = 175 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 1/108 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + + + F+ ++ ++Y Sbjct: 1 MMTYIVFVLSTIFVLSFVGFSSKPSPIYGGLGLIVSGGTGCSIVMSFNGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + M + +GSF +G++ ++V + Sbjct: 61 LGGMLVVFGYTTAMATEPYPEV-WVSNKTVMGSFIVGVVMEFILVLVA 107 >gi|76009056|gb|ABA38990.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis ghiesbreghti] gi|76009058|gb|ABA38991.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis ghiesbreghti] gi|281308352|gb|ADA58324.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis] gi|281308354|gb|ADA58325.1| NADH dehydrogenase subunit 6 [Leucopternis albicollis] Length = 172 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPAAWGDWR 86 >gi|281308258|gb|ADA58277.1| NADH dehydrogenase subunit 6 [Buteo augur] Length = 172 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|207266430|ref|YP_002261416.1| NADH dehydrogenase subunit 6 [Falco tinnunculus] gi|158187490|gb|ABW23057.1| NADH dehydrogenase subunit 6 [Falco tinnunculus] Length = 173 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + + + V + +P Y V L+ V G + LG F++++ +VY+G Sbjct: 2 TYFVFFLGVCFVFGALAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVSFISLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVALAADPFPEAWGNWR 86 >gi|25057417|ref|NP_739995.1| NADH dehydrogenase subunit 6 [Hypoptychus dybowskii] gi|25005969|dbj|BAC23591.1| NADH dehydrogenase subunit 6 [Hypoptychus dybowskii] Length = 173 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 43/108 (39%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFVMCLFLLGLVLGLVAVASNPSPYFAALGLVAVAGMGCGVLVSHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + ++ G ++G +A V + Sbjct: 62 GMLVVFAYSAALAAEPFPEGWGSRQVGAYAGLYVGGVAGLSSVFREGW 109 >gi|332887124|dbj|BAK23223.1| NADH dehydrogenase subunit 6 [Barilius bendelisis] Length = 173 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 2/110 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + I+ V + +P + L+ G+ + G F++M+ L++Y+G ++V Sbjct: 7 VLLVALIVGLIAVASNPSPYFGALGLVMVAGVGCGILVGCGGSFLSMVLLLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +F E R +G IL L+ A + Sbjct: 66 -VFAYSTALAAESYPEAWGSRSVVGYVTAYILGVSLVAVAFWGGWYEGSW 114 >gi|325652665|gb|ADZ37162.1| NADH dehydrogenase subunit 6 [Nasalis concolor] Length = 174 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 2/107 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L S + I+ + +PIY +L+ + V + L G ++ ++ ++Y Sbjct: 1 MSYILF-LLSVLLIMGFVGFSSKPSPIYGGLALVVSGVVGCVIILNCGGAYMGLMMFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + + I+ LGS IG++ +V Sbjct: 60 LGGMMVVFGYT-TAMAIEEYPEAWVSGFEVLGSLLIGLVMEVGLVLW 105 >gi|315465333|emb|CBQ72568.1| hypothetical protein sr17125 [Sporisorium reilianum] Length = 157 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 112 FMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156 + +A G +++IG +YT A L ++ ILLL+ Sbjct: 106 YTFNTAFGATDTQFASFLQIQSIGYSIYTTGALWLIVTSVILLLA 150 >gi|37596479|gb|AAQ95000.1| NADH dehydrogenase subunit 6 [Vidua obtusa] Length = 159 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 33/55 (60%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL 73 >gi|28572803|ref|NP_789583.1| secreted protein [Tropheryma whipplei TW08/27] gi|28410936|emb|CAD67321.1| putative secreted protein [Tropheryma whipplei TW08/27] Length = 433 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 8/44 (18%) Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRR------DIKRQDISKQL 180 + ++ +LL+++IGA+++ R K Q++S Q+ Sbjct: 3 IWLFILT--VLLVALIGAVLISERKTSSCNRLLSKKNQELSDQV 44 >gi|28975381|gb|AAO61767.1| NADH dehydrogenase subunit 6 [Kaupifalco monogrammicus] Length = 172 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + ++ V + +P Y V L+ V G + LG FVA++ +VY+G + Sbjct: 4 FVLILGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F++ + + A + Sbjct: 64 LVVFVYSVCLAADPFPEAWGDWR 86 >gi|29569514|gb|AAO85225.1| NADH dehydrogenase subunit 6 [Buteo hemilasius] Length = 172 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|320161611|ref|YP_004174836.1| hypothetical protein ANT_22100 [Anaerolinea thermophila UNI-1] gi|319995465|dbj|BAJ64236.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1] Length = 167 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 33/103 (32%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L + + + + S L + + +GA VA++ L V G V V Sbjct: 5 LIGAGILFCAVKAMQENRLLVSALWLALTSALVSWMMYRVGAAEVAVVELSVGAGLVTVL 64 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F+F I + + + R + + + + Sbjct: 65 FVFAINIAGDESLTRQSLVPRPLAWFAVVFSMGLLVWMIMPTL 107 >gi|294774429|dbj|BAJ05707.1| NADH dehydrogenase subunit 6 [Canis lupus] Length = 175 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 1/103 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 +G ++V F + M + L +F G+L+ L Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLAAFITGLLSELL 102 >gi|189492790|gb|ACE01489.1| NADH dehydrogenase subunit 6 [Canis lupus familiaris] Length = 175 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S T +PIY LI + + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSIVFVMSFVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + L +F G+L+ L C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLAAFITGLLSELLTAC 105 >gi|254568636|ref|XP_002491428.1| hypothetical protein [Pichia pastoris GS115] gi|238031225|emb|CAY69148.1| Hypothetical protein PAS_chr2-1_0516 [Pichia pastoris GS115] gi|328352062|emb|CCA38461.1| TRP-like ion channel pkd2 [Pichia pastoris CBS 7435] Length = 889 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 27/166 (16%) Query: 4 QSLFFY---------LFSFMAIISSFLVVTVRNPIYSVFSL--IFAFVNAAGLFLLLGAE 52 + +FF+ L + +++ V N L + F + + LLL A Sbjct: 382 EWIFFFANFGALYGILILLLTVVTFIAAVYRPNLNPGAKWLKNVLIFFLSTLITLLLHAF 441 Query: 53 FVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 + + V+ F+LF D V R ++ + I I A + + + Sbjct: 442 VIPFL--------VLTFYLF--STFSSDDTVEYLTSPRAYILALAILIFFAFICLVSFFI 491 Query: 113 MVFSAEGELSRLVFKGNNVENIGKVLYTQY------AYPLEISGFI 152 ++ + ++ N + +LY +Y Y E++ + Sbjct: 492 FRYALSKSRKQKLYSSFNTMMLWGLLYFEYDPRLLFFYIFEVAEVL 537 >gi|148922780|ref|YP_001293786.1| NADH dehydrogenase subunit 6 [Nematalosa japonica] gi|148762658|dbj|BAF64099.1| NADH dehydrogenase subunit 6 [Nematalosa japonica] Length = 173 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 42/102 (41%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 ++ V + P Y L+ + + +LG F+A+ ++Y+G ++V F + Sbjct: 13 LLGIIAVASNPAPYYGALGLVVSSGLGCAILAMLGMPFLALALFLIYLGGMLVVFGYSSA 72 Query: 76 MLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + + + F++ ++ A ++ FSA Sbjct: 73 LAADPVPESWGDESVFEYTVFYLLLVVAGVLYFGPTAHNFSA 114 >gi|15990570|gb|AAK60399.1| NADH dehydrogenase subunit 6 [Haliaeetus albicilla] Length = 164 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|217574699|gb|ACK55905.1| NADH dehydrogenase subunit 6 [Taenia multiceps] Length = 150 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 5/112 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV++ L + F + + S ++ Y V +I A V+ +L+ G + +++ + Sbjct: 1 MVLEILVTFYFFILLLFS----LSSHCVYYCVLLVINALVSCLICYLVYGFSWYSLVFCL 56 Query: 61 VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 VYVG V + F+F+ + + + + + F IG+L L N Sbjct: 57 VYVGGVYILFIFVSVFNPNDSFAIYHKVGESSIVLCFVIGLLCMCLFYSLVN 108 >gi|225697471|ref|YP_002734989.1| NADH dehydrogenase subunit 6 [Arborophila rufipectus] gi|204305246|gb|ACH99468.1| NADH dehydrogenase subunit 6 [Arborophila rufipectus] Length = 173 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG FV+++ ++Y+G ++V Sbjct: 7 FLGAGFMLGVLAVASNPSPYYGVVGLVLASVMGCGWLVSLGVSFVSLVLFMIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKK 89 F++ + + A + Sbjct: 67 FVYSVSLAADPYPEAWGSWR 86 >gi|28975371|gb|AAO61762.1| NADH dehydrogenase subunit 6 [Buteo brachypterus] Length = 172 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|327492889|ref|YP_004347847.1| NADH dehydrogenase subunit 6 [Tetraodon miurus] gi|327392418|dbj|BAK09858.1| NADH dehydrogenase subunit 6 [Tetraodon miurus] Length = 173 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 43/108 (39%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P + SL+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGVLIWHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + + L ++GI+ ++ +S Sbjct: 67 FAYSVALAAEPYPETLGSWPVLVLMLMYLGIVMLVFVLFLGGGGEYSW 114 >gi|63259170|gb|AAY40289.1| NADH dehydrogenase subunit 6 [Platysternon megacephalum] Length = 174 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 46/106 (43%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SL+ + G+ + +G F++++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVLSLVLGAASGCGVLVSVGGSFISLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +V F + ++ + ++ ++ +++ + Sbjct: 64 LVIFAYSAALVVEPYPIGWGSLWGVVYMVVYVLVIIGLVVIGHWLW 109 >gi|107736039|ref|YP_626405.1| NADH dehydrogenase subunit 6 [Microtus levis] gi|63081263|gb|AAY30382.1| NADH dehydrogenase subunit 6 [Microtus levis] Length = 174 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 1/106 (0%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 YL S + + +PIY LI + + L G F+ + ++Y+G + Sbjct: 4 LIYLLSSVIALGCMGTSLKPSPIYGGLCLIVSGCSGCLAVLGFGGSFLGFMVFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +V F + M D A +G F+ I V SN+ Sbjct: 64 LVVFGYTTAMSAEDYPEA-LVSSWLTIGILFMSIFMELGAVFVSNY 108 >gi|229493700|ref|ZP_04387484.1| NADH-Ubiquinone/plastoquinone [Rhodococcus erythropolis SK121] gi|229319369|gb|EEN85206.1| NADH-Ubiquinone/plastoquinone [Rhodococcus erythropolis SK121] Length = 945 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 13/169 (7%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 + + M I ++ +RN + SV + LF L GA +A+ +V + Sbjct: 599 FTIALMMISAAIAATLMRNRLASVILVGLTGYGCGVLFALHGAPDLALTQFLV---ETLT 655 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE-----LSR 123 +F++++ EV E + + + + + F + L Sbjct: 656 LVIFVLVLRKFPAEVDESKAIGFKWPRAALAVAVGITVTTIAAFATNARNTRPIYELLPD 715 Query: 124 LVFKGNNVENIGKVLYTQ---YAYPLEISGFILLLSMIGAIVLMLRHRR 169 + N +N+ VL + EIS +LL++ G L+ R+RR Sbjct: 716 AAYDLGNGKNVVNVLLVDIRAWDTLGEIS--VLLVAATGVASLVFRNRR 762 >gi|182434582|ref|YP_001822301.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775107|ref|ZP_08234372.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] gi|178463098|dbj|BAG17618.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655440|gb|EGE40286.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] Length = 186 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 4/140 (2%) Query: 30 YSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 + F L+ +F+ A + L+ G ++ + +++ + +++ +F+IM + + Sbjct: 28 RATFCLLASFIAVAVMILMTGLAYLGTVIILMMIIEMVIMAVFMIMYMMNPAGLMPMSMF 87 Query: 90 RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEIS 149 G+ I L+ +F A+ R + +G+ L + + Sbjct: 88 HNTRGAALIS----GLLFAGLTAGIFLADWPEKRGERPKDPTTALGETLMEGHMLTMMTL 143 Query: 150 GFILLLSMIGAIVLMLRHRR 169 G L +++ +VL R Sbjct: 144 GVTLFSTIVATVVLATGRGR 163 >gi|164421111|ref|YP_001648516.1| NADH dehydrogenase subunit 6 [Pteragogus flagellifer] gi|222839617|ref|YP_002587012.1| NADH dehydrogenase subunit 6 [Pseudolabrus eoethinus] gi|124387731|gb|ABN10232.1| NADH dehydrogenase subunit 6 [Pteragogus flagellifer] gi|170292927|gb|ACB12510.1| NADH dehydrogenase subunit 6 [Pseudolabrus eoethinus] Length = 172 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V +P ++ L+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLIGLVLGLAAVAANPSPYFAALGLVVVAGMGCGVLVGNGGPFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 F + + ++ + ++ + F G+ Sbjct: 67 FAYSAALAAEPYPEGWFNGSVALYMGLYLMGVGLAGMIFRGGWYSFCLPGD 117 >gi|110238769|dbj|BAE97660.1| ND6 [Cyprinus carpio] Length = 173 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V +F E R LG + +L L+ + Sbjct: 60 LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVGLVAGVFWGGWYEGSW 114 >gi|7329132|gb|AAF59910.1| NADH dehydrogenase subunit 6 [Buteo rufinus rufinus] gi|7329134|gb|AAF59911.1| NADH dehydrogenase subunit 6 [Buteo buteo buteo] gi|7329136|gb|AAF59912.1| NADH dehydrogenase subunit 6 [Buteo buteo vulpinus] Length = 164 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|108802840|ref|YP_637138.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] gi|81295109|emb|CAH18602.1| NADH dehydrogenase subunit 6 [Crocodylus niloticus] Length = 175 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 41/73 (56%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+L + +IS LV + Y V SL+FA + + L ++ G F+ ++ L++Y+G Sbjct: 3 ITFFLICCLMMISVVLVASGVTIHYGVVSLLFAAMFGSALLVVGGGSFMPLVVLLIYLGG 62 Query: 66 VIVFFLFIIMMLD 78 ++V F F + D Sbjct: 63 LLVVFAFCVGFTD 75 >gi|41353107|ref|NP_958776.1| NADH dehydrogenase subunit 6 [Ochotona princeps] gi|41016108|emb|CAD60958.1| NADH dehydrogenase subunit 6 [Ochotona princeps] Length = 174 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 39/108 (36%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L S M + + +PIY LI + G+ L GA F+ ++ +VY+G ++V Sbjct: 7 LLSMMFVAGFVGFSSKPSPIYGGLGLIVSGGVGCGIILSYGASFLGLMMFLVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + M + + ++ L+ V Sbjct: 67 FGYTTAMATEEYPESWGSNVVVLGTLVAGLVMELALVGLFMGDGVIDW 114 >gi|299829073|ref|YP_003735090.1| NADH dehydrogenase subunit 6 [Chimaera fulva] gi|298110899|gb|ADI57851.1| NADH dehydrogenase subunit 6 [Chimaera fulva] Length = 173 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 7/126 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRN-PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++F M I + V P ++ F L+ + GL G F++++ ++Y+G Sbjct: 2 IYFVFLMLMCFIMGLVAVASNPAPYFAAFGLVMSAAVGCGLLASHGVSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F++ + AEP + S I + L V + +S L Sbjct: 62 GMLVVFVYSAALT------AEPHPESWLDWSVLINVFMYALGVSVAAGYFCGGWSMMSWL 115 Query: 125 VFKGNN 130 +N Sbjct: 116 GVDESN 121 >gi|256985417|ref|YP_003162847.1| NADH dehydrogenase subunit 6 [Sinocyclocheilus grahami] gi|238683595|gb|ACR54081.1| NADH dehydrogenase subunit 6 [Sinocyclocheilus grahami] Length = 173 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 3/127 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGILAGHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V +F E R LG +L L+ + ++ Sbjct: 60 LGGMLV--VFAYSAALAAEPFPEAWGNRSVLGYVVAYLLGVSLVAGFFWGGWYEGSWVVA 117 Query: 123 RLVFKGN 129 + + + Sbjct: 118 DGLKEFS 124 >gi|68989214|ref|YP_254634.1| NADH dehydrogenase subunit 6 [Okamejei kenojei] gi|41216618|gb|AAR99697.1| NADH dehydrogenase subunit 6 [Okamejei kenojei] Length = 172 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 42/94 (44%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ I+ V + +P Y+ L+ + GL + G+ F++++ ++Y+G ++V Sbjct: 6 FIMMLGFIMGLVAVASNPSPYYAALGLVISAGVGCGLLVSSGSSFLSLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILA 102 F + ++ + F++G+L Sbjct: 66 VFAYTAALVAEPYPESWGDWSVFVYVLFYVGVLV 99 >gi|58045613|ref|YP_192925.1| NADH dehydrogenase subunit 6 [Bombina orientalis] gi|46242525|gb|AAS83379.1| NADH dehydrogenase subunit 6 [Bombina orientalis] Length = 169 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 2/107 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F ++ V + +P Y+ L+ A + + GA F++++ ++Y+G ++V Sbjct: 7 FFLVGLVLGLVAVASNPSPYYAALGLVMAAGAGCCVIVNFGASFLSLVLFLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 +F E +G + +L + + FS Sbjct: 66 -VFAYSAALTAEPYPEAWGSWSVVGYILVYLLLVTMGYYVVGGLTFS 111 >gi|16357288|ref|NP_443383.1| NADH dehydrogenase subunit 6 [Scopelogadus mizolepis] gi|16267088|dbj|BAB70233.1| NADH dehydrogenase subunit 6 [Scopelogadus mizolepis] Length = 169 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 1/96 (1%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF-IIMMLD 78 V + +P ++ L+ GL + G F++++ ++Y+G ++V F + + + Sbjct: 13 IAVASNPSPYFAALGLVVVAGLGCGLLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAE 72 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 E R G++ ++ +G+L + V Sbjct: 73 PHPEGWGSRSVVGYVMAYCVGVLLVSGCFWGGWYEV 108 >gi|300859186|ref|YP_003784169.1| hypothetical protein cpfrc_01769 [Corynebacterium pseudotuberculosis FRC41] gi|300686640|gb|ADK29562.1| putative membrane protein [Corynebacterium pseudotuberculosis FRC41] gi|302206876|gb|ADL11218.1| Putative membrane protein [Corynebacterium pseudotuberculosis C231] gi|308277130|gb|ADO27029.1| Putative membrane protein [Corynebacterium pseudotuberculosis I19] Length = 433 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 9/137 (6%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 + +V L+ F + + L +F A ++ +VY V + F + M+ +P Sbjct: 216 VAAVLFLVPGFPLFSAMIDLGRFDFDAGVSRLVYAVTVTLTATFSVAMIS-RATGLDPVP 274 Query: 89 KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY-----TQYA 143 G ++ L A I ++F++ ++ + N+ K+L T Y Sbjct: 275 VMVEPGDSWLIALFASFIGIGGFALLFNSSRRMALVAAAVGTTANMIKLLLEANNATDYV 334 Query: 144 YPLEISGFILLLSMIGA 160 I+G I + ++GA Sbjct: 335 SVF-IAGLI--VGLLGA 348 >gi|288903551|ref|YP_003434307.1| NADH dehydrogenase subunit 6 [Palea steindachneri] gi|219562446|gb|ACL27739.1| NADH dehydrogenase subunit 6 [Palea steindachneri] Length = 175 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 48/110 (43%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F +LF ++ V + + Y V L+F V+ + +G F++++ ++Y Sbjct: 1 MMVFFMFLFEVCFVLWVISVASGPSSYYGVVGLVFGAVSGCLMLAGIGGSFISLVLFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + + + A F + ++ ++ ++ C + Sbjct: 61 LGGMLVVFAYSVALTGDPYPSAWRDYGSLFCMAGYVLLVVGAVMFCFDVW 110 >gi|269216417|ref|ZP_06160271.1| putative LPXTG-motif protein cell wall anchor domain protein [Slackia exigua ATCC 700122] gi|269129946|gb|EEZ61028.1| putative LPXTG-motif protein cell wall anchor domain protein [Slackia exigua ATCC 700122] Length = 550 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 10/67 (14%) Query: 107 VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLR 166 A+ + V + + IG +L+T + G +L+ + + AI+L R Sbjct: 494 TVATTYTVTQSIFNTTDFTLPK--TGGIGTILFT-------VGGIVLVGAAV-AIILTSR 543 Query: 167 HRRDIKR 173 ++ +K+ Sbjct: 544 KKKVVKK 550 >gi|148922808|ref|YP_001293838.1| NADH dehydrogenase subunit 6 [Odaxothrissa vittata] gi|148762714|dbj|BAF64151.1| NADH dehydrogenase subunit 6 [Odaxothrissa vittata] Length = 173 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F LF F ++ V + P ++ L+ + + + G+ F+A+ ++Y+G Sbjct: 5 ISFLLFGF--VLGMVGVASNPAPYFAALGLVLSSGVGCAILAMFGSPFLALALFLIYLGG 62 Query: 66 VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + D E + +G+L A + + + Sbjct: 63 MLVVFGYSAALAADAHPESWGDASVFEHAMFYVVGVLVASMYFGPTAY 110 >gi|131839362|ref|YP_001096026.1|ND6_20621 NADH dehydrogenase subunit 6 [Cyprinodon rubrofluviatilis] gi|127461930|gb|ABO28472.1| NADH dehydrogenase subunit 6 [Cyprinodon rubrofluviatilis] Length = 173 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 39/104 (37%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y F ++ V + +P ++ L+ G+ + G F+++I ++Y+G ++V Sbjct: 6 YCLLFGLVVGLAAVASNPSPYFAALGLVLVAGMGCGVLVGHGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + L ++G + + + Sbjct: 66 VFAYSAALAAEPYPEGWGSWPVLGLVVGYLGGVGVAAGMVVGGW 109 >gi|156142540|gb|ABU52035.1| NADH dehydrogenase subunit 6 [Tiaris olivaceus] Length = 166 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++ V + +P Y V L+ A V G + LG F++++ ++VY+G ++V Sbjct: 1 FXGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFISLVLVMVYLGGMLVV 60 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELS 122 F++ + + E G +G F IG++ ++ + F + + EG ++ Sbjct: 61 FVYSVSLAA--EPYPEAWGSSGVIGYGFGIGLVVVVGLMVSGVFGLLTGEGTVN 112 >gi|121582411|ref|YP_980189.1| NADH dehydrogenase subunit 6 [Coleonyx variegatus] gi|121309359|dbj|BAF43977.1| NADH dehydrogenase subunit 6 [Coleonyx variegatus] Length = 173 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 46/111 (41%), Gaps = 1/111 (0%) Query: 8 FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F L + + ++ V+ +P + L+ GL ++ G F++++ ++Y+G + Sbjct: 4 FVLMASLCFLAGSAAVSANPSPFFGAVGLVVTAAFGCGLLVVSGWSFISLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +V F + + + + G++ ++ F+ +S+ Sbjct: 64 LVVFAYSVALSAEAYPETWADFSVVLYLVGYGGLVFVLGLLNGGPFIGYSS 114 >gi|29569520|gb|AAO85228.1| NADH dehydrogenase subunit 6 [Buteo augur] Length = 172 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|255506409|ref|YP_003097162.1| NADH dehydrogenase subunit 6 [Budorcas taxicolor] gi|197107937|gb|ACH42514.1| NADH dehydrogenase subunit 6 [Budorcas taxicolor] Length = 175 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 3/107 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+M +F + S + ++ + +PIY LI + G+ L G F+ ++ + Sbjct: 1 MIMYIVF--ILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNYGGSFLGLMVFL 58 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +Y+G ++V F + M + LG+F G+L ++ Sbjct: 59 IYLGGMMVVFGYTTAMATEQYPEV-WVSNKVVLGTFITGLLMEFFMI 104 >gi|257062371|gb|ACV40201.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIVNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|165932477|ref|YP_001650734.1| NADH dehydrogenase subunit 6 [Eurypegasus draconis] gi|154758804|dbj|BAF74949.1| NADH dehydrogenase subunit 6 [Eurypegasus draconis] Length = 173 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L S + ++ V + +P ++ L+ G+ + G F+++I ++Y Sbjct: 1 MTYIMFVLLSAL-VLGLVAVASNPSPYFAALGLVVVAGAGCGVLVGYGGSFLSLILFLIY 59 Query: 63 VGAVIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + + + E R ++G + + ++ + Sbjct: 60 LGGMLVVFAYSSALAAEPYPETLGSRSVAVYIGMYMLAVMGFSTSFIGGWY 110 >gi|118573111|sp|Q074N0|POLG_YEFVE RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 gi|81249972|gb|ABB69689.1| polyprotein [Yellow fever virus] Length = 3412 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 14/110 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPI-YSVFSLIFAFVNAAGLFLLLGAEFVAMITL-- 59 M + ++ + +++S +V+ +P S S+ + +G + F+ + Sbjct: 2158 MTIVMLFILAG--LLTSGMVIFFMSPKGMSRMSMAMGTMAGSGYLM-----FLGGVKPTH 2210 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + YV + F++M++ I + + + IGIL IV A Sbjct: 2211 ISYV----MLIFFVLMVVIIPEPGQQRTIQDNQVAYLIIGILTLLSIVAA 2256 >gi|16357400|ref|NP_443448.1| NADH dehydrogenase subunit 6 [Kareius bicoloratus] gi|16267339|dbj|BAB70454.1| NADH dehydrogenase subunit 6 [Kareius bicoloratus] gi|225690864|gb|ACO06116.1| NADH dehydrogenase subunit 6 [Pseudopleuronectes herzensteini] Length = 173 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFVMYLVLFSLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + S + + V + + + E S + Sbjct: 62 GMLVVFAYSAAL------AAEPYPESWGSWSVMVYGVVYVAGVAMVSGLFWGGWYESSWV 115 Query: 125 VFK 127 + Sbjct: 116 LVD 118 >gi|317097229|ref|YP_004123361.1| NADH dehydrogenase subunit 6 [Rattus fuscipes] gi|290573438|gb|ADD46555.1| NADH dehydrogenase subunit 6 [Rattus fuscipes] Length = 172 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY F LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLAGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +F E E F+ F+ +L++ Sbjct: 66 --VFGYTTAMATEEYPETWGSNWFIFGVFVLGFLMDLVML 103 >gi|19481538|gb|AAL88841.1|AF407108_1 NADH dehydrogenase subunit 6 [Vidua paradisaea] Length = 159 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 33/55 (60%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL 73 >gi|328671393|gb|AEB26562.1| NADH dehydrogenase subunit 6 [Nannoperca australis] Length = 173 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 39/98 (39%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + ++ Sbjct: 17 IAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSTALVAE 76 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + ++ ++ ++ + S Sbjct: 77 PYPESWGSRPVAVYMIMYLAVVTVVSVLLGGGWYETSW 114 >gi|240266450|ref|YP_002970802.1| NADH dehydrogenase subunit 6 [Cynoglossus semilaevis] gi|164519776|gb|ABY59945.1| NADH dehydrogenase subunit 6 [Cynoglossus semilaevis] gi|254763710|gb|ACT80241.1| NADH dehydrogenase subunit 6 [Cynoglossus semilaevis] Length = 173 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 40/96 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + Y+ + ++ VV +P + +L+ A + ++ G F+A++ +VY+G Sbjct: 2 TFIMYIALLVMVVGLGAVVAHPSPYFGSLTLVVVSGAACVVLIVYGGTFLALVMFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGI 100 ++V F + + + ++G+ Sbjct: 62 GMLVVFAYTTALAADSFPYTLTYGDVMLYWTLYMGL 97 >gi|190349494|ref|YP_001974655.1| NADH dehydrogenase subunit 6 [Cyclemys atripons] gi|116518545|gb|ABJ99500.1| NADH dehydrogenase subunit 6 [Cyclemys atripons] Length = 174 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G F++++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGVLSGCGVLVSMGGSFISLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + ++ + + G ++ L ++ ++S EG + V Sbjct: 64 LVIFAYSSALMAESFPLGCVSLEGVIYGLYY---LFIVVVFMKMGCHLWSIEGVGADTVD 120 Query: 127 KGN 129 G Sbjct: 121 AGG 123 >gi|190349382|ref|YP_001974694.1| NADH dehydrogenase subunit 6 [Pyxidea mouhotii] gi|108863145|gb|ABG22137.1| NADH dehydrogenase subunit 6 [Pyxidea mouhotii] Length = 174 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 46/99 (46%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SLIF ++ G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCNPSPYYGVVSLIFGALSGCGVLVSMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 +V F + + VA + ++ I+ + Sbjct: 64 LVIFAYSSAWMAEPYPVAWGSQGGVVYVVSYVFIIVVFM 102 >gi|281308378|gb|ADA58337.1| NADH dehydrogenase subunit 6 [Rostrhamus sociabilis] Length = 172 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|119360439|ref|YP_913573.1| NADH dehydrogenase subunit 6 [Barbus trimaculatus] gi|119225273|dbj|BAF41634.1| NADH dehydrogenase subunit 6 [Barbus trimaculatus] Length = 173 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 1/115 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M +L +L + +A+ S VV+ P ++ F L+ A G+ L G F++++ ++Y Sbjct: 1 MTNLMSFLLAALAV-SLVSVVSNPTPYFAAFGLVVAAGVGCGVLLSCGGSFLSVVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + A ++ LA + + S Sbjct: 60 LGGMLVVFAYAAALAAESFPEAWGSSSVLIYVLVYLLALALMAMFFGGGWYEGSW 114 >gi|257062377|gb|ACV40204.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|257062361|gb|ACV40196.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|257062359|gb|ACV40195.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|207269744|ref|YP_002261376.1| NADH dehydrogenase subunit 6 [Rhinolophus formosae] gi|158142298|gb|ABW20503.1| NADH dehydrogenase subunit 6 [Rhinolophus formosae] Length = 175 Score = 35.4 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTIFVISFVGFSSKPSPIYGGVGLIVSGGVGCGIVMSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F G++ + V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFVAGLVVEIMFVL 105 >gi|5835413|ref|NP_007444.1|ND6_12189 NADH dehydrogenase subunit 6 [Ceratotherium simum] gi|3122556|sp|O03206|NU6M_CERSI RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|2052163|emb|CAA69017.1| NADH-ubiquinone oxidoreductase subunit VI [Ceratotherium simum] Length = 175 Score = 35.4 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S M +IS + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMAYIGFILSIMFVISFVGFSSKPSPIYGGLVLIMSGGFGCGIVMSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M LG+F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSSAAVLGAFVLGVLMEVVLVL 105 >gi|289183271|ref|YP_003457250.1| NADH dehydrogenase subunit 6 [Ceratias uranoscopus] gi|288909049|dbj|BAI77285.1| NADH dehydrogenase subunit 6 [Ceratias uranoscopus] Length = 173 Score = 35.4 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 37/96 (38%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ + GA F++++ ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVVVAGLGCGVLVGYGASFLSLVLFLIYLGGMLVVFAYSAALAAEPY 78 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + ++ + + FS Sbjct: 79 PEGFGSWRVLGSAAIYLVGVGVAAGFFWGRWYEFSW 114 >gi|148922822|ref|YP_001293851.1| NADH dehydrogenase subunit 6 [Pellonula leonensis] gi|148762728|dbj|BAF64164.1| NADH dehydrogenase subunit 6 [Pellonula leonensis] Length = 173 Score = 35.4 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F LF F ++ V + P ++ L+ + + + G+ F+A+ ++Y+G Sbjct: 5 ISFLLFGF--VLGMVGVASNPAPYFAALGLVLSSGVGCAILAMFGSPFLALALFLIYLGG 62 Query: 66 VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + D E + +G+L A + + + Sbjct: 63 MLVVFGYSAALAADAHPESWGDASVFEHAMFYVVGVLIASMYFGPTAY 110 >gi|212725576|ref|YP_002317322.1| NADH dehydrogenase subunit 6 [Culaea inconstans] gi|212374493|dbj|BAG83064.1| NADH dehydrogenase subunit 6 [Culaea inconstans] Length = 173 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 46/107 (42%), Gaps = 3/107 (2%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L + + + + V + +P ++ L+ G+ + G F++++ ++Y+G ++V Sbjct: 8 FLLAMVLVGGA--VSSGPSPFFAALGLVMVAGMGCGVLVSHGGPFLSLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMV 114 F + + ++ G F+ +G+ + C + V Sbjct: 66 VFAYSAALAAEPFPEGWGSRQVGVYMIFYALGVGLMSNMFCGGWYEV 112 >gi|126215485|ref|YP_001054826.1| NADH dehydrogenase subunit 6 [Odax cyanomelas] gi|125625495|dbj|BAF46855.1| ND6 [Odax cyanomelas] Length = 173 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ GL LG F+++I ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVLVAGMGCGLLASLGGPFLSLILFLIYLGGMLVVFAYSAAL----- 73 Query: 82 EVAEPRKKRGFLGSFFIGIL 101 AEP G +GIL Sbjct: 74 -AAEPYPDSWLSGPVVLGIL 92 >gi|56548675|ref|YP_161284.1| NADH dehydrogenase subunit 6 [Potorous tridactylus] gi|56398572|emb|CAG26444.1| NADH dehydrogenase subunit 6 [Potorous tridactylus] Length = 167 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 2/109 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +LFS + I + +P+Y SL+ + + + L F+ +I ++Y Sbjct: 1 MKMMIVFLFSVLLIFGFVAFASKPSPVYGGLSLVVSGGLGCAIVVSLEDVFLGLIVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V +F E E S + L EL+ + Sbjct: 61 LGGMLV--VFGYTAAMATEEYPESWVGNTVALSMLMFTLFMELVWYLMS 107 >gi|229931191|ref|YP_002887622.1| NADH dehydrogenase subunit 6 [Dicerorhinus sumatrensis] gi|229473123|gb|ACQ73096.1| NADH dehydrogenase subunit 6 [Dicerorhinus sumatrensis] Length = 175 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIGFILSVVFVISFVGFSSKPSPIYGGLVLIVSGGVGCGIVMSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M LG+F +G++ ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNATVLGAFILGVMMEVVLVL 105 >gi|209886993|ref|YP_002290816.1| NADH dehydrogenase subunit 6 [Bungarus multicinctus] gi|170774091|gb|ACB36663.1| NADH dehydrogenase subunit 6 [Bungarus multicinctus] Length = 164 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 3/104 (2%) Query: 28 PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87 P V +L+ + L +LLG F A++ +VY+G ++V F + + + + E Sbjct: 26 PYQGVIALMGVSFSCCMLMVLLGRTFAALVMYIVYLGGLVVVFGYCVSV---EKGGKESF 82 Query: 88 KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 K F+ ++ L + +S ++ + G V Sbjct: 83 KVSWSSYLVFLIVVLVSLYSDFGGLLTYSDWENMACMEINGGAV 126 >gi|161561765|ref|YP_001586257.1| NADH dehydrogenase subunit 6 [Archilochus colubris] gi|143024825|gb|ABO93121.1| NADH dehydrogenase subunit 6 [Archilochus colubris] Length = 173 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ + V G + LG FV+++ +VY+G Sbjct: 2 TYFMLFLGLCFVLGGLAVASNPSPYYGVVGLVLSSVVGCGWLMSLGLSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVSLAADPFPETWGDWR 86 >gi|29569574|gb|AAO85255.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus unicinctus] gi|29569576|gb|AAO85256.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus unicinctus] gi|281308376|gb|ADA58336.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus] Length = 172 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|76009068|gb|ABA38996.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus] gi|76009070|gb|ABA38997.1| NADH dehydrogenase subunit 6 [Parabuteo unicinctus] Length = 172 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVCLAADPFPEAWGDWR 86 >gi|257062383|gb|ACV40207.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|126792879|gb|ABO27293.1| NADH dehydrogenase subunit 6 [Guaruba guarouba] Length = 170 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F +++S LV + +P Y V L+F V G + LG FV+++ +VY+G Sbjct: 2 TYFLMFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGTSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F++ + + Sbjct: 62 GMLVVFVYSVSL 73 >gi|289833322|gb|ADD21344.1| NADH dehydrogenase subunit 6 [Larimichthys polyactis] Length = 172 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 6/106 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ + G F+++I ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVVVAGLGCGILVGHGGHFLSLILFLIYLGGMLVVFAYSAAL----- 73 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 AEP + S + IL + V + + + E S + Sbjct: 74 -AAEPYPESWGSRSVMVYILVYVVGVVMVSGLFWGGWYETSWVPVD 118 >gi|260150997|ref|YP_003208312.1| NADH dehydrogenase subunit 6 [Mesocricetus auratus] gi|186694662|gb|ACC86271.1| NADH dehydrogenase subunit 6 [Mesocricetus auratus] Length = 174 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 9/128 (7%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+S+ + S + +PIY LI + + LG F+ ++ ++Y Sbjct: 2 MESIL--ILSSFIALGCLGTSLKPSPIYGGMCLIISGCAGCLAVMGLGGSFLGLMVFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + M + ++ S+ + + I + E Sbjct: 60 LGGMMVVFGYTTAM-------SAEEYPETWVSSWLMFGVLVMSIFMELGMTFVTNYYEGV 112 Query: 123 RLVFKGNN 130 +V N+ Sbjct: 113 EVVLNFNS 120 >gi|330467098|ref|YP_004404841.1| hypothetical protein VAB18032_15645 [Verrucosispora maris AB-18-032] gi|328810069|gb|AEB44241.1| hypothetical protein VAB18032_15645 [Verrucosispora maris AB-18-032] Length = 302 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 15/22 (68%) Query: 148 ISGFILLLSMIGAIVLMLRHRR 169 ++G LL++++G VL R RR Sbjct: 277 LAGLFLLVALVGGGVLAARRRR 298 >gi|257062401|gb|ACV40216.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|281210989|gb|EFA85155.1| hypothetical protein PPL_02155 [Polysphondylium pallidum PN500] Length = 548 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 10/83 (12%) Query: 71 LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNN 130 L + +M D + P K+ + L L+ ++S GN Sbjct: 262 LLVALMTDWNQSCDFPLKQWATIQIIIQASLIINLLFLF---------FDISPTDTDGNI 312 Query: 131 VENIGKVLYTQYAYPLEISGFIL 153 + + ++L + Y + G IL Sbjct: 313 IPYLARILSSSYVIWFIV-GVIL 334 >gi|147917512|gb|ABQ52619.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|147917538|gb|ABQ52643.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062341|gb|ACV40186.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062349|gb|ACV40190.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062363|gb|ACV40197.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062381|gb|ACV40206.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062385|gb|ACV40208.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062387|gb|ACV40209.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062389|gb|ACV40210.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062403|gb|ACV40217.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|121582632|ref|YP_980202.1| NADH dehydrogenase subunit 6 [Lepidophyma flavimaculatum] gi|121309373|dbj|BAF43990.1| NADH dehydrogenase subunit 6 [Lepidophyma flavimaculatum] Length = 174 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L S I+ V +P + V L+ + V +G+ L+G FV++ ++Y+G ++V Sbjct: 7 LLSVCIILGQLTVAANPSPYFGVIGLVLSAVFGSGMMALIGNSFVSLALFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 F + + + P + S + + + ++ F+ Sbjct: 67 FAYSMALSSDPF----PETIGAWSASLYFLVFCSAVVFFGFMFV 106 >gi|242912968|ref|YP_002970913.1| NADH dehydrogenase subunit 6 [Trionyx triunguis] gi|239937441|dbj|BAH79155.1| NADH dehydrogenase subunit 6 [Trionyx triunguis] Length = 174 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 48/109 (44%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 F ++F + V + +P Y V L+F V + + LG F++++ +VY+G Sbjct: 3 FFIFMFEICFVFWVVSVASGPSPYYGVVGLVFGAVFGCLVLIGLGGSFISLVLFLVYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 ++V F + + + VA ++ ++ ++VC + + Sbjct: 63 MLVVFAYSVALTGDSYPVAWCDYSNLSCMVGYLLLVFGGVVVCYGMWSL 111 >gi|194303999|gb|ACF41517.1| NADH dehydrogenase subunit 6 [Gadus morhua] Length = 173 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 6/115 (5%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P ++ L+ + + G F++++ ++Y+G ++V F + Sbjct: 10 IGMVLGVISVASNPSPYFAALGLVLVAGVGCVVLMGHGGSFLSLVLFLIYLGGMLVVFAY 69 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + + AEP + S +L L+V + + E + Sbjct: 70 CVAL------AAEPYPEAWGEWSVLGSVLGYLLLVVGAGSWFWGGWYEGMWVPVD 118 >gi|109689621|ref|YP_659497.1| NADH dehydrogenase subunit 6 [Piliocolobus badius] gi|88174300|gb|ABD39303.1| NADH dehydrogenase subunit 6 [Piliocolobus badius] Length = 174 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 1/110 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L S + ++ + +PIY +L+ + V + L G ++ ++ ++Y Sbjct: 1 MAYILF-LLSVLLVMGFIGFSSKPSPIYGGLALVISGVVGCVIILNYGGTYMGLMMFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + M + A F + LI+ + Sbjct: 60 LGGMMVVFGYTTAMAIEEYPEAWGSGFEVFGSLLAGLAMEVGLILWVLEY 109 >gi|208433813|ref|YP_002265625.1| NADH dehydrogenase subunit 6 [Lactoria diaphana] gi|207367085|dbj|BAG72058.1| NADH dehydrogenase subunit 6 [Lactoria diaphana] Length = 173 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 42/115 (36%), Gaps = 1/115 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F LF F ++ V +P ++ L+ G+ + G F++++ ++Y Sbjct: 1 MTYIMF-LFLFGLVVGLMAVAANPSPYFAALGLVVVAGLGCGVLVGHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + + + + + V + S Sbjct: 60 LGGMLVVFAYSAALAAEPYPESWGSRPVVLSMMVYGAAVILASGVFWGGWYESSW 114 >gi|166851958|ref|YP_001661444.1| NADH dehydrogenase subunit 6 [Eremitalpa granti] gi|166788102|emb|CAP17692.1| NADH dehydrogenase subunit 6 [Eremitalpa granti] Length = 173 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 46/122 (37%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + +I + +P+Y LI + G+ + G F+ ++ +VY+G ++V Sbjct: 6 FMLSVIFVIGFISFSSKPSPVYGGLGLIVSGGLGCGIVIYFGGSFLGLMVFLVYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 F + M + A +L ++V + G + + + Sbjct: 66 VFGYTTAMATEEYPEAWGSNMVIMGAMMIGVVLEVLMMVLLVGNFGMDSYGYIGLVDWVI 125 Query: 129 NN 130 N Sbjct: 126 YN 127 >gi|111022734|ref|YP_705706.1| hypothetical protein RHA1_ro05770 [Rhodococcus jostii RHA1] gi|110822264|gb|ABG97548.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 702 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 4/140 (2%) Query: 32 VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK-KR 90 +L+ A A L + A ++++V+ V L + + + +A RK + Sbjct: 337 AVALVMALGAVALLVVSTEHRSAAYLSILVFAALVPTHQLTPYWLFGVTVALAVTRKIRP 396 Query: 91 GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK--VLYTQYAYPLEI 148 +L + IL A L+ + + + +NV +G ++T Sbjct: 397 WWLPVPYFAILVAYLVPRLDIVAPYGLLSGFNPVDNAASNVTAVGTFGKIFTSAVCRSLS 456 Query: 149 SGFILLLSMIGAIVLMLRHR 168 +G +LL +++ AI+L R R Sbjct: 457 AGIVLL-AVVCAILLWRRKR 475 >gi|29569518|gb|AAO85227.1| NADH dehydrogenase subunit 6 [Buteo augur] Length = 172 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|257062375|gb|ACV40203.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|257062347|gb|ACV40189.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062351|gb|ACV40191.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062353|gb|ACV40192.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|147917524|gb|ABQ52630.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|202071080|gb|ACH95425.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062337|gb|ACV40184.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062339|gb|ACV40185.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062343|gb|ACV40187.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062345|gb|ACV40188.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062365|gb|ACV40198.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062369|gb|ACV40200.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062373|gb|ACV40202.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062379|gb|ACV40205.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062399|gb|ACV40215.1| NADH dehydrogenase subunit 6 [Equus caballus] gi|257062407|gb|ACV40219.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|61200927|gb|AAX39830.1| NADH dehydrogenase subunit 6 [Bombina orientalis] Length = 169 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 6/105 (5%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F ++ V + +P Y+ L+ A + + GA F++++ ++Y+G ++V Sbjct: 7 FFLVGLVLGLVAVASNPSPYYAALGLVMAAGAGCCVIVNFGASFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 F + + AEP + S IL L+V +MV Sbjct: 67 FAYSAALT------AEPYPEAWGSWSVVGYILVYLLLVIMGYYMV 105 >gi|84579697|dbj|BAE72275.1| NADH dehydrogenase subunit 6 [Oryzias latipes] Length = 173 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 44/109 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ V + +P ++ L+ + G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLIGLVLGLAAVASNPSPYFTALGLVTVAGVSCGILVSYGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L F++ ++ + +S + S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSTLMLFYVLLVVCASVFFSSGWFEGSW 114 >gi|76009034|gb|ABA38979.1| NADH dehydrogenase subunit 6 [Busarellus nigricollis] Length = 172 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 37/83 (44%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G + Sbjct: 4 FVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKK 89 +V F++ + + A + Sbjct: 64 LVVFVYSVCLAADPFPEAWGDWR 86 >gi|115375580|ref|ZP_01462838.1| NADH-ubiquinone/plastoquinone family protein [Stigmatella aurantiaca DW4/3-1] gi|310818333|ref|YP_003950691.1| NADH-ubiquinone oxidoreductase, chain 5 [Stigmatella aurantiaca DW4/3-1] gi|115367447|gb|EAU66424.1| NADH-ubiquinone/plastoquinone family protein [Stigmatella aurantiaca DW4/3-1] gi|309391405|gb|ADO68864.1| NADH-ubiquinone oxidoreductase, chain 5 [Stigmatella aurantiaca DW4/3-1] Length = 763 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 L V R+ + ++ +L + + +++LLGA +A+ +VV V + F I + Sbjct: 611 LAVMTRSVLTALMALSVVGLTESFVYVLLGAPDLALTQVVVQTLTV-ILFALIFSRFPVQ 669 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELI 106 R++ L G+++ L+ Sbjct: 670 PSGGRSRRRDAALSLAAGGLISWTLL 695 >gi|29569530|gb|AAO85233.1| NADH dehydrogenase subunit 6 [Buteo jamaicensis borealis] Length = 107 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + LG FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|298367387|gb|ADI79586.1| NADH dehydrogenase subunit 6 [Gekko gecko] Length = 169 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 3/92 (3%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + V + ++ V +LI V+ G+ + LG FV ++ L+VY+G ++V F + I + Sbjct: 14 VGVAGVTANPSAVFGVGALILGAVSGCGILVGLGGSFVGLVLLLVYIGGMLVVFAYSIAL 73 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 + +E + +F+G L ++ Sbjct: 74 V---VEPHLESWLEYAVLVYFVGYLVVTAVLW 102 >gi|148922626|ref|YP_001293799.1| NADH dehydrogenase subunit 6 [Sardinella maderensis] gi|148762672|dbj|BAF64112.1| NADH dehydrogenase subunit 6 [Sardinella maderensis] Length = 173 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 3/113 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F LF F I+ V + P ++ L+ + + + G+ F+A+ ++Y+G Sbjct: 5 ISFLLFGF--ILGMVGVASNPAPYFAALGLVLSSGVGCAILAMFGSPFLALALFLIYLGG 62 Query: 66 VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + D E + +G++ A + + + + Sbjct: 63 MLVVFGYSAALAADAHPESWGDASVFEHAMLYIVGVVGASMYFGPAAYGFSTG 115 >gi|44843559|emb|CAE48114.1| NADH deydrogenase subunit 6 [Bufo melanostictus] Length = 164 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 40/97 (41%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF F ++ V + +P Y+ L+ + + + G F+ ++ +VY+G ++V Sbjct: 4 LFEFGLVVGLLAVASNPSPYYAALGLVGSAGAGCLILMDSGISFLCLVLFLVYLGGMMVV 63 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELI 106 F + ++ A ++ +L A + Sbjct: 64 FAYSAALVAEPYPEAWGGGAVWSYIIVYVFLLGAWWM 100 >gi|257062355|gb|ACV40193.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVISFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|218157299|ref|YP_002364453.1| NADH dehydrogenase subunit 6 [Larimichthys crocea] gi|162946605|gb|ABY21294.1| NADH dehydrogenase subunit 6 [Larimichthys crocea] gi|219560090|gb|ACL27253.1| NADH dehydrogenase subunit 6 [Larimichthys crocea] Length = 173 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 2/98 (2%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ + G F+++I ++Y+G ++V +F Sbjct: 19 VASNPSPYFAALGLVVVAGLGCGILVGHGGHFLSLILFLIYLGGMLV--VFAYSAALAAE 76 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 E R + F+ ++ ++ + Sbjct: 77 PYPESWGSRRVMAYIFVYVVGVAMVSGLFWGGWYETSW 114 >gi|157778787|gb|ABV70918.1| NADH dehydrogenase subunit 6 [Bos taurus] Length = 175 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +G ++V F + + + LG+F G+L +V Sbjct: 61 LGGMMVVFG-CTTAMATEQYPEIWLSNKAVLGAFVTGLLMEFFMV 104 >gi|19481566|gb|AAL88855.1|AF407122_1 NADH dehydrogenase subunit 6 [Plocepasser mahali] Length = 159 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGCGWLVSLGVSFVSLALVLVY 59 Query: 63 VGAVIVFFLFIIMM 76 +G ++V F++ + + Sbjct: 60 LGGMLVVFVYSVSL 73 >gi|302201534|gb|ADL09096.1| NADH dehydrogenase subunit 6 [Turtur tympanistria] Length = 173 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P Y V L+ A V G L LG FV+++ +VY+G ++V F++ + + Sbjct: 21 SNPSPYYGVVGLVVASVAGCGWLLSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPE 80 Query: 84 AEPRKKRGFLGSFFIGILAAELIV 107 A + G F+ +L ++ Sbjct: 81 AWGDWRVVGYGLGFVLVLIVGAVM 104 >gi|13116580|ref|NP_076855.1| NADH dehydrogenase subunit 6 [Emeus crassus] gi|14039580|gb|AAK53318.1|AF338712_13 NADH dehydrogenase subunit VI [Emeus crassus] gi|12957466|gb|AAK07701.1| NADH dehydrogenase subunit 6 [Emeus crassus] Length = 173 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F I+ + V + +P Y V L+ V G L LGA F++++ +VY+G Sbjct: 2 TYFVLFLGVCFILGALAVASNPSPYYGVLGLVVGSVVGCGWLLSLGASFISLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|76009072|gb|ABA38998.1| NADH dehydrogenase subunit 6 [Leucopternis princeps] Length = 172 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L ++ V + +P Y V L+ V G + LG FV ++ +VY+G ++V Sbjct: 7 LLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVPFVGLVLFMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKK 89 F++ + + + Sbjct: 67 FVYSVCLAADPFPETWGDWR 86 >gi|167951304|ref|ZP_02538378.1| hypothetical protein Epers_35080 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 38 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 19/29 (65%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPI 29 M + + FY+ + + I ++ +V+T RNP+ Sbjct: 4 MTFEKIVFYVLAALLIFAATMVITRRNPV 32 >gi|119360747|ref|YP_913729.1| NADH dehydrogenase subunit 6 [Misgurnus nikolskyi] gi|119225455|dbj|BAF41803.1| NADH dehydrogenase subunit 6 [Misgurnus nikolskyi] Length = 173 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 2/105 (1%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 II V + P ++ L+ A G+ + G F++++ ++Y+G ++V +F Sbjct: 12 LIIGLIAVASNPAPYFAALGLVVAAGFGCGVLISHGGSFLSLVLFLIYLGGMLV--VFAY 69 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 E R LG I ++ L++ + + Sbjct: 70 SAALAAEPYPESWGDRSVLGYVLIYVVGVSLVMSFLHEGWYEGSW 114 >gi|111924889|dbj|BAF02829.1| NADH dehydrogenase subunit 6 [Biwia zezera] Length = 173 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGILVGSGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V +F E R G I +L L+ A + Sbjct: 60 LGGMLV--VFAYSAALAAEPFPEAWGSRSVAGYVMIYLLGVVLMAGALWGGWYEGSW 114 >gi|83309055|ref|YP_423934.1| NADH dehydrogenase subunit 6 [Gekko gecko] gi|37538483|gb|AAQ93005.1| NADH dehydrogenase subunit 6 [Gekko gecko] Length = 169 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 3/92 (3%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + V + ++ V +LI V+ G+ + LG FV ++ L+VY+G ++V F + I + Sbjct: 14 VGVAGVTANPSAVFGVGALILGAVSGCGILVGLGGSFVGLVLLLVYIGGMLVVFAYSIAL 73 Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 + +E + +F+G L ++ Sbjct: 74 V---VESHLESWLEYAVLVYFVGYLVVTAVLW 102 >gi|270267418|ref|YP_003331118.1| NADH dehydrogenase subunit 6 [Talismania bifurcata] gi|269994332|dbj|BAI50323.1| NADH dehydrogenase subunit 6 [Talismania bifurcata] Length = 173 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF I+ V + P ++ F L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLIVGLIAVASNPAPYFAAFGLVVAAGVGCGVLVGHGGAFLSLVLFLIYLGGMLVV 66 Query: 70 FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + E R G++ ++F+G++ A + Sbjct: 67 FAYSAALAAEPFPETWGDRSVVGYVVAYFVGVVLAAGWFWGGWY 110 >gi|238801615|ref|YP_002922020.1| polyprotein [Wesselsbron virus] gi|197631351|gb|ACH70606.1| polyprotein [Wesselsbron virus] Length = 3405 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 51/114 (44%), Gaps = 15/114 (13%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSL---IFAFVNAAGLFLLLGAEF--VA 55 M+ ++ +L +AII + V+ +F L + ++ A + +L+ A + Sbjct: 2148 MMPEATTIFLLVMLAIICTSGVI--------MFFLAPKGLSRMSMAMMTMLVSAYLMSLG 2199 Query: 56 MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + V ++VFF+F+++++ + + +G+L+ L+V A Sbjct: 2200 GMNPVQISCVMLVFFIFMVVLIP--EPGTQRSTYDNQIIYLLVGVLSLILLVAA 2251 >gi|119360649|ref|YP_913443.1| NADH dehydrogenase subunit 6 [Labeo batesii] gi|119225133|dbj|BAF41504.1| NADH dehydrogenase subunit 6 [Labeo batesii] Length = 173 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 3/117 (2%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ F L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLVAVASNPTPYFAAFGLVVAAGVGCGVLVGHGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V +F E R LG + +L L+ + Sbjct: 60 LGGMLV--VFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVGLVAGLFWGGWYEGSW 114 >gi|116734799|ref|YP_842437.1| NADH dehydrogenase subunit 6 [Ardea novaehollandiae] gi|109676614|gb|ABG37706.1| NADH dehydrogenase subunit 6 [Ardea novaehollandiae] Length = 173 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ V G L LG F++++ +VY+G Sbjct: 2 TYFVIFLGVCFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLLSLGVSFISLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + A + Sbjct: 62 GMLVVFVYSVSLAADPFPEAWGDWR 86 >gi|5835217|ref|NP_008262.1|ND6_10685 NADH dehydrogenase subunit 6 [Felis catus] gi|1352592|sp|P48926|NU6M_FELCA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1098535|gb|AAC48580.1| NADH dehydrogenase subunit 6 [Felis catus] Length = 175 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGTGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K L F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105 >gi|302331442|gb|ADL21636.1| Integral membrane protein [Corynebacterium pseudotuberculosis 1002] Length = 425 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 9/137 (6%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK 88 + +V L+ F + + L +F A ++ +VY V + F + M+ +P Sbjct: 208 VAAVLFLVPGFPLFSAMIDLGRFDFDAGVSRLVYAVTVTLTATFSVAMIS-RATGLDPVP 266 Query: 89 KRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY-----TQYA 143 G ++ L A I ++F++ ++ + N+ K+L T Y Sbjct: 267 VMVEPGDSWLIALFASFIGIGGFALLFNSSRRMALVAAAVGTTANMIKLLLEANNATDYV 326 Query: 144 YPLEISGFILLLSMIGA 160 I+G I + ++GA Sbjct: 327 SVF-IAGLI--VGLLGA 340 >gi|49616814|ref|YP_044724.1| NADH dehydrogenase subunit 6 [Abronia graminea] gi|49256970|dbj|BAD24774.1| NADH dehydrogenase subunit 6 [Abronia graminea] Length = 171 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 47/108 (43%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 Y+F +++ V T +P + L+ + V G+ + +G FV+++ ++Y+G + Sbjct: 4 LIYIFFLCLMLALIWVATNPSPYFGAAGLVGSSVVGCGVLVGVGYSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +V F + + + A F F + ++ L++ + Sbjct: 64 LVVFAYTVSLASEPYPEAVGDSAGYFWSYFGLFVMMGMLMIMEGTVGL 111 >gi|257062393|gb|ACV40212.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|270267562|ref|YP_003331247.1| NADH dehydrogenase subunit 6 [Alepocephalus umbriceps] gi|269994164|dbj|BAI50167.1| NADH dehydrogenase subunit 6 [Alepocephalus umbriceps] Length = 173 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF I+ V + P ++ F L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLIVGLVAVASNPAPYFAAFGLVVAAGVGCGILVGHGGAFLSLVLFLIYLGGMLVV 66 Query: 70 FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + E R G++ ++F+G++ A + Sbjct: 67 FAYSAALAAEPFPETWGDRSVIGYVVAYFVGVVLAAGWFWGGWY 110 >gi|148922556|ref|YP_001293864.1| NADH dehydrogenase subunit 6 [Sardina pilchardus] gi|148762742|dbj|BAF64177.1| NADH dehydrogenase subunit 6 [Sardina pilchardus] Length = 199 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 34/101 (33%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL+ +I + V P ++ L+ + + A +A++ L++Y+G ++V Sbjct: 11 YLWLVGFVIGALGVGINPAPHFAALGLVMCSGACCVILVFSKATALAVVLLLIYLGGMLV 70 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 F +F I ++ Sbjct: 71 VLAFSCACAGGLSFDEPFEASPHDAAAFVIIGFIVGMMYLV 111 >gi|5835119|ref|NP_007171.1|ND6_10543 NADH dehydrogenase subunit 6 [Equus caballus] gi|1352594|sp|P48657|NU6M_HORSE RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|577583|emb|CAA56090.1| NADH dehydrogenase [Equus caballus] gi|47156692|gb|AAT12243.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|322422462|ref|YP_004221887.1| NADH dehydrogenase subunit 6 [Heterotis niloticus] gi|317176381|dbj|BAJ54205.1| NADH dehydrogenase subunit 6 [Heterotis niloticus] Length = 173 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 6/118 (5%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L M II V + P Y+ F L+ A V + + G F++++ ++Y+G ++V Sbjct: 7 LLMVMLIIGLVAVASNPAPYYAAFGLVLAAVMGCCVLMWHGGPFLSLVLFMIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 F + + AEP + + S F +L L + + + +V Sbjct: 67 FAYSAAL------AAEPYPEVWWDLSVFSYVLVYLLGLGVVGGWLSDGWYKNFWVVVD 118 >gi|269994136|dbj|BAI50141.1| NADH dehydrogenase subunit 6 [Alepocephalus longiceps] Length = 173 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF I+ V + P ++ F L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLIVGLVAVASNPAPYFAAFGLVVAAGVGCGVLVGHGGTFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 F + + A R G++ ++ +G++ A + Sbjct: 67 FAYSAALAAEPFPEAWGDRSGIGYVFAYLVGVVLAAGWFWGGWY 110 >gi|238927418|ref|ZP_04659178.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531] gi|238884700|gb|EEQ48338.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531] Length = 526 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 22/32 (68%) Query: 143 AYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 + +++ +L++++I A VLM R ++ ++R+ Sbjct: 427 IFYMQVGAVLLIIALIVAAVLMYRRKKRLERE 458 >gi|114052874|ref|YP_740094.1| NADH dehydrogenase subunit 6 [Biwia zezera] gi|111924869|dbj|BAF02816.1| NADH dehydrogenase subunit 6 [Biwia zezera] Length = 173 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + I+ V + P ++ L+ A G+ G F++++ ++Y Sbjct: 1 MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGILFGSGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + + AEP + S ++ L V +++ E S Sbjct: 60 LGGMLVVFAYSAAL------AAEPFPEAWGSRSVAGYVMIYLLGVVLMAGVLWGGWYEGS 113 Query: 123 RLVFKG 128 ++ G Sbjct: 114 WVMIDG 119 >gi|14039336|gb|AAK53181.1| NADH dehydrogenase subunit 6 [Galaxias brevipinnis] Length = 173 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + P ++ L+ A G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78 Query: 82 EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 + R G++ ++F+G+L + + Sbjct: 79 PESWGDRSVLGYVLAYFVGVLVTAGLFWGGWY 110 >gi|226365243|ref|YP_002783026.1| hypothetical protein ROP_58340 [Rhodococcus opacus B4] gi|226243733|dbj|BAH54081.1| hypothetical membrane protein [Rhodococcus opacus B4] Length = 702 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 4/141 (2%) Query: 32 VFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRK-KR 90 +L+ A A L + A ++++V+ V L + + +A RK + Sbjct: 337 AVALVMALGVVALLVVSTEHRSAAYLSILVFAALVPTHQLTPYWLFGVTAALAVTRKIRP 396 Query: 91 GFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKV--LYTQYAYPLEI 148 +L + IL A L+ + + + +NV +G V ++T Sbjct: 397 WWLPVPYFAILVAYLVPRLDIVAPYGLLSGFNPVDNAASNVTAVGTVGKIFTSAVCRSLS 456 Query: 149 SGFILLLSMIGAIVLMLRHRR 169 +G ILL +++ AI+L R Sbjct: 457 AGIILL-AVVCAILLWRSKRP 476 >gi|84579641|dbj|BAE72223.1| NADH dehydrogenase subunit 6 [Oryzias latipes] Length = 173 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 43/109 (39%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ V + +P ++ L+ + G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L ++ ++A + + + S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVAWASVFFSGGWFEGSW 114 >gi|25057226|ref|NP_739722.1| NADH dehydrogenase subunit 6 [Lota lota] gi|25005619|dbj|BAC23279.1| NADH dehydrogenase subunit 6 [Lota lota] Length = 173 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 6/115 (5%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + Sbjct: 10 IGMVLGVISVASNPSPYFAALGLVLVAGVGCGVLMGHGGSFLSLVLFLIYLGGMLVVFAY 69 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + AEP + S +L L+V + E + + Sbjct: 70 CAAL------AAEPYPEAWGEWSVLGSVLGYLLLVFGGVSWFWGGWYEGAWVPVD 118 >gi|89953627|ref|YP_525475.1| NADH dehydrogenase subunit 6 [Siphonops annulatus] gi|62002045|gb|AAX58672.1| NADH dehydrogenase subunit 6 [Siphonops annulatus] Length = 167 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 1/116 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F ++ V + +P ++ F L+ + + + G F++++ ++Y Sbjct: 1 MTYVIFLGL-IGLVLGMVGVASNPSPYFAAFGLVLSSACGCLILVSFGMSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 +G ++V F + M A F + +L + ++F A+ Sbjct: 60 LGGMLVVFAYSAAMAAEPYPEAWGSLSVVFYVLIYCVVLIVGWNLMGEVDVMFKAQ 115 >gi|327492609|ref|YP_004347507.1| NADH dehydrogenase subunit 6 [Lagocephalus sceleratus] gi|327392558|dbj|BAK09988.1| NADH dehydrogenase subunit 6 [Lagocephalus sceleratus] Length = 173 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 38/98 (38%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P + SL+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 17 IAVASNPSPYFGALSLVVVAGFGCGVLIWHGGSFLSLVLFLIYLGGMLVVFAYSAALAAE 76 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + G++ + ++ + +S Sbjct: 77 PYPETLGSGPVLVSMLMYFGVVVSTFVLFLGGALEYSW 114 >gi|327492819|ref|YP_004347702.1| NADH dehydrogenase subunit 6 [Tetraodon palembangensis] gi|327392390|dbj|BAK09832.1| NADH dehydrogenase subunit 6 [Tetraodon palembangensis] Length = 173 Score = 35.0 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 41/108 (37%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P + SL+ G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLVLGLVAVASNPSPYFGALSLVVVAAFGCGILVWHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + ++ ++ ++ + +S Sbjct: 67 FAYSAALAAEPYPETLGSWPVLVSMLMYVSVVVLVFMLFLGGWGEYSW 114 >gi|296099638|gb|ADG95242.1| NADH dehydrogenase subunit 6 [Polypterus sp. golden dust] Length = 167 Score = 35.0 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 36/67 (53%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L +FS + +IS V + +P ++ F L+ G+ + G F++MI ++Y+G Sbjct: 2 LLMVVFSIIFLISLIAVASNPSPYFAAFGLMVGAGVGCGMLMQCGVTFLSMILFLIYLGG 61 Query: 66 VIVFFLF 72 ++V F + Sbjct: 62 MLVVFAY 68 >gi|225690858|gb|ACO06113.1| NADH dehydrogenase subunit 6 [Paralichthys lethostigma] Length = 173 Score = 35.0 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + L F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFVMCLVLFCLVLGLVAVASNPSPFFAALGLVVVAGMGCGVLIGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLG-SFFIGILAAELIVCASNF 112 ++V F + + + G S+ +G++ A + Sbjct: 62 GMLVVFAYSAALAAEPYPESWGSWPVMIYGASYMVGVILASATFWGGWY 110 >gi|257062391|gb|ACV40211.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.0 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|109689579|ref|YP_659484.1| NADH dehydrogenase subunit 6 [Rhinopithecus roxellana] gi|88174286|gb|ABD39290.1| NADH dehydrogenase subunit 6 [Rhinopithecus roxellana] Length = 174 Score = 35.0 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 2/107 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F LFS + I+ + +PIY +L+ + V + L G ++ ++ ++Y Sbjct: 1 MSYILF-LFSMLLIMGFVGFSSKPSPIYGGLALVISGVIGCIIILNYGGTYMGLMMFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + + I+ LGS G++ ++ Sbjct: 60 LGGMMVVFGYT-TAMAIEEYPEAWVSGWEVLGSLLTGLMMEVGLILW 105 >gi|257791375|ref|YP_003181981.1| cell divisionFtsK/SpoIIIE [Eggerthella lenta DSM 2243] gi|317490517|ref|ZP_07948995.1| FtsK/SpoIIIE family protein [Eggerthella sp. 1_3_56FAA] gi|325831520|ref|ZP_08164774.1| FtsK/SpoIIIE family protein [Eggerthella sp. HGA1] gi|257475272|gb|ACV55592.1| cell divisionFtsK/SpoIIIE [Eggerthella lenta DSM 2243] gi|316910368|gb|EFV31999.1| FtsK/SpoIIIE family protein [Eggerthella sp. 1_3_56FAA] gi|325486774|gb|EGC89222.1| FtsK/SpoIIIE family protein [Eggerthella sp. HGA1] Length = 842 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 24/156 (15%) Query: 11 FSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLL-LGAEFVAMITLVVYVGAVIVF 69 F+ +A++ V N + + +FV+ A L LGA + + L++ GA Sbjct: 61 FAVLAVVLFVAAVLPTNAV------VTSFVSTALHLSLGLGAYLLPFLLLII--GA---- 108 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 + D E R G + F + L S L +G Sbjct: 109 ----SFLARFDRERVPVRVAVGLVMIFVAALSLLALFTPESAPDSVDRLFLSDELAARGG 164 Query: 130 ----NVENIGKVLYTQYAYPLEISGFIL--LLSMIG 159 + +G L+ Q + + G +L L+ +IG Sbjct: 165 YLGAGIAWVGISLFGQAVTCIIMIGIVLAGLV-IIG 199 >gi|25057685|ref|NP_739930.1| NADH dehydrogenase subunit 6 [Sargocentron rubrum] gi|25005899|dbj|BAC23526.1| NADH dehydrogenase subunit 6 [Sargocentron rubrum] Length = 173 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 17 VAVASNPSPYFAALGLVGVAGLGCGVLVGYGGPFLSLVLFLIYLGGMLVVFAYSAALAAE 76 Query: 80 DIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMV 114 + R G++ ++ IG+L + V Sbjct: 77 PYPESWGSRSVVGYVVAYLIGVLLVSSYFWGGWYEV 112 >gi|212725464|ref|YP_002317218.1| NADH dehydrogenase subunit 6 [Aulichthys japonicus] gi|212374521|dbj|BAG83090.1| NADH dehydrogenase subunit 6 [Aulichthys japonicus] Length = 173 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 40/96 (41%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ G F++++ ++Y+G ++V F + + Sbjct: 19 VSSNPSPYFAALGLVLVSGMGCGVLASHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++ GF ++ + A + A + +S Sbjct: 79 PEGLGSRQVGFYMMLYVAGVVALSNMYAGGWYEWSW 114 >gi|29570709|ref|NP_818824.1| NADH dehydrogenase subunit 6 [Sarcocheilichthys variegatus microoculus] gi|29501036|dbj|BAC67401.1| NADH dehydrogenase subunit 6 [Sarcocheilichthys variegatus microoculus] Length = 173 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGVLVGSGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + + AEP + S ++ L V + + E S Sbjct: 60 LGGMLVVFAYSAAL------AAEPFPEAWGSRSVVGYVVVYFLGVVLMGGVFWGGWYEGS 113 Query: 123 RLVFKG 128 ++ G Sbjct: 114 WVIIDG 119 >gi|222837521|ref|YP_002586879.1| NADH dehydrogenase subunit 6 [Gyrinomimus myersi] gi|222051584|dbj|BAH15270.1| NADH dehydrogenase subunit 6 [Gyrinomimus myersi] Length = 173 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + ++ V + +P ++ L+ GL + G F++++ ++Y+G Sbjct: 2 TYLMSFLLVGLVVGLIAVASNPSPFFAALGLVVVAGLGCGLLVGYGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + S F + V + + E+ + Sbjct: 62 GMLVVFAYSAAL------AAEPFPESWGSWSVFGQAFIYFMGVVLAFWYFRGGWSEVCWV 115 Query: 125 VFK 127 + Sbjct: 116 PVE 118 >gi|115531621|ref|YP_784007.1| NADH dehydrogenase subunit 6 [Neofelis nebulosa] gi|78157547|gb|ABB22891.1| NADH dehydrogenase subunit 6 [Neofelis nebulosa] Length = 175 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A + L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTIFVVSFVSFSSKPSPIYGGFGLIVAGGVGCAIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K LG F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLGMFITGVLAELLTAC 105 >gi|95929675|ref|ZP_01312417.1| TM2 domain protein [Desulfuromonas acetoxidans DSM 684] gi|95134372|gb|EAT16029.1| TM2 domain protein [Desulfuromonas acetoxidans DSM 684] Length = 314 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 7/121 (5%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFV--NAAGLFLLLGAEFVAMITLV---VYVGAVIVFFLF 72 V RN + V L+ F G L ++ L+ Y+ ++ F F Sbjct: 97 CGVRVAPPRNVVNKVALLVITFFLGGLGGHKFYLKKNLQGVLYLLFFWTYIPTLVAFIEF 156 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE 132 II + E+ E + G F + ++ L + + + R K NV Sbjct: 157 IIYACKSEPELQEKYPETSTGGIFIVLLVPVLLAIVGILAAIAIPQYVAYRQ--KAGNVA 214 Query: 133 N 133 Sbjct: 215 A 215 >gi|301353446|ref|YP_003795669.1| NADH dehydrogenase subunit 6 [Collichthys lucidus] gi|300069590|gb|ADJ66694.1| NADH dehydrogenase subunit 6 [Collichthys lucidus] Length = 172 Score = 35.0 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 6/106 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ + G F+++I ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVVVAGLGCGILVGHGGHFLSLILFLIYLGGMLVVFAYSAAL----- 73 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 AEP + + ILA + V + + E S + Sbjct: 74 -AAEPYPESWGSRPVMVYILAYVVGVVMVSGQFWGGWYETSWVPVD 118 >gi|284162680|ref|YP_003401303.1| hypothetical protein Arcpr_1584 [Archaeoglobus profundus DSM 5631] gi|284012677|gb|ADB58630.1| hypothetical protein Arcpr_1584 [Archaeoglobus profundus DSM 5631] Length = 147 Score = 35.0 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 35/96 (36%), Gaps = 2/96 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + + + R+ YS + + AG++ G + ++++GA+ Sbjct: 10 ILYVLIVTFGIASLLSRDNFYSALYMCLTMICIAGVYAYYGIHSAFALIALIFIGALGAV 69 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 L ++ + + K R + + + A + Sbjct: 70 TL--VLAYSYREKASIKYKLRWIFFALAVAVFLALV 103 >gi|5081437|gb|AAD39381.1|AF123901_1 NADH dehydrogenase subunit 6 [Grus canadensis canadensis] gi|5081439|gb|AAD39382.1|AF123902_1 NADH dehydrogenase subunit 6 [Grus canadensis rowani] gi|5081441|gb|AAD39383.1|AF123903_1 NADH dehydrogenase subunit 6 [Grus canadensis pratensis] gi|5081443|gb|AAD39384.1|AF123904_1 NADH dehydrogenase subunit 6 [Grus canadensis pratensis] gi|5081445|gb|AAD39385.1|AF123905_1 NADH dehydrogenase subunit 6 [Grus canadensis pulla] gi|224504190|gb|ACN53760.1| NADH dehydrogenase subunit 6 [Grus canadensis] Length = 173 Score = 35.0 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 2/109 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F + ++ V + +P Y V L+ A V G L LG FV+++ +VY+G Sbjct: 2 TYFMFFMGLCFVLGGLAVASNPSPYYGVVGLVVASVVGCGWLLSLGVSFVSLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 ++V F++ + + E R +G +L + V F+ Sbjct: 62 GMLVVFVYSVSLAA--DPYPEAWGDRRVVGYVAGLVLVLVMGVVIGGFV 108 >gi|308522851|gb|ACA80587.2| NADH dehydrogenase subunit 6 [Homo sapiens] Length = 174 Score = 35.0 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 39/103 (37%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +L S ++ + +PIY LI + V + L G ++ ++ ++Y+G + Sbjct: 4 ALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +V F + M + A + + L++ Sbjct: 64 MVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWV 106 >gi|183982355|ref|YP_001850646.1| MmpL family transport protein [Mycobacterium marinum M] gi|183175681|gb|ACC40791.1| conserved transmembrane transport protein, MmpL family [Mycobacterium marinum M] Length = 1457 Score = 35.0 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 17/129 (13%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLI----FAFVNAAGL-----FLLLGAEFV 54 + F +F+ + I+ LV+ +R + + LI +F++A GL L+LG + Sbjct: 837 HDIQFIVFATILIVFLILVILLRAIV-APLYLIGSVLVSFLSALGLGVIVFQLILGKDLH 895 Query: 55 AMI-----TLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + L+V VGA L I + + +GS I +A LI A Sbjct: 896 WSLPGLSFILLVAVGADYNMLL--ISRIRDESPHGVRVGVIRTVGSTGGVITSAGLIFAA 953 Query: 110 SNFMVFSAE 118 S F + +A Sbjct: 954 SMFGLLAAS 962 >gi|146411779|gb|ABI54474.1| polyprotein [Wesselsbron virus] Length = 3405 Score = 35.0 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 51/114 (44%), Gaps = 15/114 (13%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSL---IFAFVNAAGLFLLLGAEF--VA 55 M+ ++ +L +AII + V+ +F L + ++ A + +L+ A + Sbjct: 2148 MMPEATTIFLLVMLAIICTSGVI--------MFFLAPKGLSRMSMAMMTMLVSAYLMSLG 2199 Query: 56 MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + V ++VFF+F+++++ + + +G+L+ L+V A Sbjct: 2200 GMNPVQISCVMLVFFIFMVVLIP--EPGTQRSTYDNQIIYLLVGVLSLILLVAA 2251 >gi|332886830|dbj|BAK22950.1| NADH dehydrogenase subunit 6 [Leptobarbus hoevenii] Length = 173 Score = 35.0 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L I+ V + P ++ L+ A G+ + G F++++ ++Y+G Sbjct: 2 TYFMSLLLVALIVGLVAVASNPTPYFAALGLVVAAGVGCGILVGCGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + S +L L V + E S + Sbjct: 62 GMLVVFAYSAAL------AAEPFPEAWGSRSVVGYVLVYLLGVGLMAGFFWGGWYEGSWV 115 Query: 125 VFKG 128 V G Sbjct: 116 VIDG 119 >gi|126792873|gb|ABO27289.1| NADH dehydrogenase subunit 6 [Diopsittaca nobilis] gi|126792876|gb|ABO27291.1| NADH 6 [Diopsittaca nobilis] Length = 170 Score = 35.0 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +++S LV + +P Y V L+F V G + LG FV+++ +VY+G + Sbjct: 4 FLMFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGVSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|226310865|ref|YP_002770759.1| hypothetical protein BBR47_12780 [Brevibacillus brevis NBRC 100599] gi|226093813|dbj|BAH42255.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 645 Score = 35.0 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 1/98 (1%) Query: 49 LGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 LG + + +VV G + L ++D E ++ L + A E Sbjct: 81 LGDTLLGLWNVVVDAGDIASTALPTSYLVDAIYEGVTGEERPSLLERNDLARGAVETATN 140 Query: 109 ASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPL 146 A N++ + G S K ++ +++G+ LY Y P Sbjct: 141 AVNYVGDTVTGNKSWEQIK-SDAKSVGQGLYDDYIDPF 177 >gi|25057288|ref|NP_739852.1| NADH dehydrogenase subunit 6 [Cetostoma regani] gi|25057628|ref|NP_739865.1| NADH dehydrogenase subunit 6 [Eutaeniophorus sp. 033-Miya] gi|222834812|ref|YP_002586801.1| NADH dehydrogenase subunit 6 [Parataeniophorus gulosus] gi|25005773|dbj|BAC23409.1| NADH dehydrogenase subunit 6 [Cetostoma regani] gi|25005787|dbj|BAC23422.1| NADH dehydrogenase subunit 6 [Eutaeniophorus sp. 033-Miya] gi|222051612|dbj|BAH15296.1| NADH dehydrogenase subunit 6 [Parataeniophorus gulosus] Length = 173 Score = 35.0 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 6/108 (5%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ GL + G F++++ ++Y+G ++V F + + Sbjct: 17 IAVASNPSPYFAALGLVVVAGLGCGLLIGYGGPFLSLVLFLIYLGGMLVVFAYSAAL--- 73 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 AEP + S + ++V + + + E S + Sbjct: 74 ---AAEPFPESWCNWSVVGYAMTYLILVVSISSYFWGDWYEASWVPAD 118 >gi|331090822|ref|ZP_08339668.1| hypothetical protein HMPREF9477_00311 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399681|gb|EGG79343.1| hypothetical protein HMPREF9477_00311 [Lachnospiraceae bacterium 2_1_46FAA] Length = 385 Score = 35.0 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 9/139 (6%) Query: 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFL-LLGAEFVAMITLVVY 62 ++ F + + + +++ + S LIF FV L+L ++ F + VV Sbjct: 133 TTILFAMIGVFLL--ALVLIGRGKGVTSALGLIFTFVCILYLYLPMMYLGFSPFFSAVV- 189 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 V + + M G +G I + A L + ++ Sbjct: 190 ---VTILTTLVTMYFIGGFSKKTLCAIVGTVGGVVIAGIFANL-FGKLGHITGHNVSDIE 245 Query: 123 RLVFKGNNVE-NIGKVLYT 140 L++ G N + IG +L++ Sbjct: 246 TLLYIGQNSKLQIGGLLFS 264 >gi|16357162|ref|NP_443266.1|ND6_15810 NADH dehydrogenase subunit 6 [Saurida undosquamis] gi|16266860|dbj|BAB70051.1| NADH dehydrogenase subunit 6 [Saurida undosquamis] Length = 173 Score = 35.0 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 42/115 (36%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF F ++ V + P ++ L+ + G+ L G F++++ +VY+G Sbjct: 2 AYLMSLFLFGFVVGMVGVASNPAPYFAALGLVLSAGFGCGVMLSCGGSFLSLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 ++V F + + + + ++G + + + Sbjct: 62 GMLVVFAYSAALAAEPYPTSWGDRSVAGYVVVYLGGVVMAGFGLLGGWYDITWIT 116 >gi|270155282|gb|ACZ62678.1| NADH dehydrogenase subunit 6 [Notothenia coriiceps] Length = 174 Score = 35.0 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 9/141 (6%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL F ++ V +P Y+ L+ G + LG F ++ ++Y+G ++V Sbjct: 6 YLLMFGVVVGMAAVAANPSPFYAALGLVMVAAMGCGFIMCLGGTFSCLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLD--IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 F + + + + +AE + +G + + A + + + G+ S + Sbjct: 66 VFAYSVALCSDALPTGLAEGSVLKSMVGYLGLTGVVALFQQSSEAPLFWWFVGQESEMSV 125 Query: 127 KGNNVENI-------GKVLYT 140 E + G +L T Sbjct: 126 MQGETEGVSEAYGSGGILLLT 146 >gi|25057827|ref|NP_740060.1| NADH dehydrogenase subunit 6 [Carangoides armatus] gi|25006066|dbj|BAC23681.1| NADH dehydrogenase subunit 6 [Carangoides armatus] Length = 173 Score = 35.0 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 33/68 (48%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLIGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLF 72 ++V F + Sbjct: 62 GMLVVFAY 69 >gi|299823674|ref|YP_003734470.1| NADH dehydrogenase subunit 6 [Collichthys niveatus] gi|297242126|gb|ADI24736.1| NADH dehydrogenase subunit 6 [Collichthys niveatus] Length = 172 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 6/106 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ + G F+++I ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVVVAGLGCGILVGHGGHFLSLILFLIYLGGMLVVFAYSAAL----- 73 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 AEP + S + IL + V + + + E S + Sbjct: 74 -AAEPYPESWGSRSVMVYILVYVVGVVMVSGLFWGGWYETSWVPVD 118 >gi|238550522|gb|ACR44378.1| NADH dehydrogenase subunit 6 [Bambusicola fytchii] Length = 173 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ + V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGTCFMLGVLAVASNPSPYYGVVGLVVSSVVGCGWLVSLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F++ + + A + +G IL + F+ F Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWR--VVGYGLGFILVVFVGAVLGGFVDF 110 >gi|119360259|ref|YP_913391.1| NADH dehydrogenase subunit 6 [Opsariichthys uncirostris] gi|119225077|dbj|BAF41452.1| NADH dehydrogenase subunit 6 [Opsariichthys uncirostris] Length = 173 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 1/115 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLVAVASNPTPYFAALGLVVAAGVGCGILVGYGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + A + ++ +A V + S Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLVYLAGVALAAGVFWGGWYEGSW 114 >gi|42717972|ref|NP_976098.1| NADH dehydrogenase subunit 6 [Rhinolophus monoceros] gi|62510827|sp|Q94VK5|NU6M_RHIMO RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|15420942|gb|AAK97519.1|AF406806_12 NADH dehydrogenase subunit 6 [Rhinolophus monoceros] Length = 175 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTIFVISFVGFSSKPSPIYGGVGLIVSGGVGCGIVMSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V +F + E + FI L E++ Sbjct: 61 LGGMLV--VFGYTTAMATEQYPEVWVSNKVVMGAFISGLIVEVVFVL 105 >gi|5835287|ref|NP_008314.1|ND6_10917 NADH dehydrogenase subunit 6 [Crossostoma lacustre] gi|464251|sp|P34196|NU6M_CROLA RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|336715|gb|AAB96822.1| NADH dehydrogenase subunit 6 [Crossostoma lacustre] gi|284507253|dbj|BAI67681.1| NADH dehydrogenase subunit-6 [Crossostoma lacustre] Length = 173 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 2/110 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L I+ V + P ++ L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LLLMALIVGLIAVASNPAPYFAALGLVVAAGVGCGVLVSHGGSFLSLVLFLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +F E R +G I +L L+V + Sbjct: 66 -VFAYSAALAAEPFPEAWGDRSVVGYVMIYLLGVGLMVGVFWEGWYEGSW 114 >gi|315142312|gb|ADT82255.1| NADH dehydrogenase subunit 6 [Hylobates muelleri] Length = 174 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 43/105 (40%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + +L S + ++ + +PIY L+ + V + L G ++ ++ ++Y+G Sbjct: 2 TYTLFLLSVILVMGFVGFSSKPSPIYGGLVLVISGVVGCAIILNYGGGYLGLMVFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 ++V F + M + A G ++ L++ A Sbjct: 62 GMMVVFGYTTAMAIEEYPEAWGSGVEVLAGVLVGLVMEVGLVLWA 106 >gi|208433916|ref|YP_002265638.1| NADH dehydrogenase subunit 6 [Chilomycterus reticulatus] gi|207367099|dbj|BAG72071.1| NADH dehydrogenase subunit 6 [Chilomycterus reticulatus] Length = 173 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 43/105 (40%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F ++ V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + Sbjct: 10 FGLVLGLVAVASNPSPYFAALGLVLVAGLGCGVLVSHGGSFLSLVLFLIYLGGMLVVFAY 69 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + + F G ++G++ V + S Sbjct: 70 SAALAAEPFPESLGSRSVAFSGVVYVGVVFMVSSVFWGGWYESSW 114 >gi|84488772|ref|YP_448814.1| NADH dehydrogenase subunit 6 [Manouria emys] gi|67005631|gb|AAY62429.1| NADH dehydrogenase subunit 6 [Manouria emys] Length = 174 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 42/106 (39%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SL+ + G+ + +G FV+++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMIGVSCSSSPYYGVLSLVLGAASGCGVLVGMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +V F + + + ++V S + Sbjct: 64 LVIFAYSSALAAEPYPAGWGSLDAIIYVVSCMIAAVWFMMVDYSWW 109 >gi|8844994|ref|NP_059961.1| NADH dehydrogenase subunit 6 [Typhlonectes natans] gi|8650319|gb|AAF78157.1|AF154051_12 NADH dehydrogenase subunit 6 [Typhlonectes natans] Length = 171 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 8/115 (6%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F+ ++ V + +P Y+ L+ + + + +G F+++I ++Y Sbjct: 1 MSYIAFFSL-IGVVLGLIGVASNPSPYYAALGLVVGAASGCVVLIGVGVNFLSLILFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + M VA +G + L+V + + Sbjct: 60 LGGMLVVFSYSAAMAAESYPVAWGEWS-------VVGNVVGYLVVFGGGWALIDG 107 >gi|84488704|ref|YP_448879.1| NADH dehydrogenase subunit 6 [Testudo marginata] gi|67005703|gb|AAY62496.1| NADH dehydrogenase subunit 6 [Testudo marginata] Length = 174 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y VFSL+ G+ + +G FV++I ++Y+G + Sbjct: 4 FMFLFGFCFVFWMVGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFMIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +V F + + G ++ + ++ S + Sbjct: 64 LVIFAYSCALAAEPYPAGWGTLDVVIYGLCYLVCVLWLMLTDYSWW 109 >gi|169627739|ref|YP_001701388.1| putative monovalent cation/H+ antiporter subunit A [Mycobacterium abscessus ATCC 19977] gi|169239706|emb|CAM60734.1| Putative cation antiporter NADH dehydrogenase subunit [Mycobacterium abscessus] Length = 949 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 40/107 (37%), Gaps = 3/107 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + + ++ +RN + +V + +F L GA +A+ +V + Sbjct: 599 VVGLLILAAAIGATVMRNRLAAVLLVGITGYGTGTIFALHGAPDLALTQFLV---ETLTL 655 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 +F++++ + E + R L + I + + + + Sbjct: 656 VIFVLVLRALPAESDIQQANRFRLPRAVLAIAVGCTVTALGVYAMAA 702 >gi|3551904|gb|AAC34851.1| NADH dehydrogenase subunit 6 [Schistolais leucopogon] Length = 159 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + V + +P Y V L+ A + G LG F++++ ++VY+G ++V F++ + + Sbjct: 14 LGGLAVASNPSPYYGVVGLVMASIAGCGWLAGLGVSFMSLVLVMVYLGGMLVVFVYSVSL 73 >gi|84579599|dbj|BAE72184.1| NADH dehydrogenase subunit 6 [Oryzias latipes] Length = 173 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 42/109 (38%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ V + +P ++ L+ + G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L ++ ++ + + + S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSTLMLVYVLLVTCASVFFSGGWFEGSW 114 >gi|256427207|ref|YP_003126977.1| NADH dehydrogenase subunit 6 [Scorpis lineolata] gi|256353359|dbj|BAH97868.1| NADH dehydrogenase subunit 6 [Scorpis lineolata] Length = 173 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF I+ V + +P ++ L+ G+ + G F+ ++ ++Y+G Sbjct: 2 TFVMSLFLICLIVGLVAVASNPSPYFAALGLVVVSGMGCGVLVGHGGSFLPLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + + + + + ++V + + E S + Sbjct: 62 GMLVVFAYCSAL------AAEPYPESWGSRAVAVYMASYVVLVVVMAGLFWGGWYESSWV 115 Query: 125 VFK 127 + Sbjct: 116 TVE 118 >gi|124007622|ref|ZP_01692326.1| serine/threonine kinase with GAF domain, putative [Microscilla marina ATCC 23134] gi|123986920|gb|EAY26685.1| serine/threonine kinase with GAF domain, putative [Microscilla marina ATCC 23134] Length = 771 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 9/104 (8%) Query: 28 PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF---------IIMMLD 78 P +S L+FA VNAA +F A + + L+ + A+ V + II Sbjct: 293 PRHSFMFLVFALVNAAVMFFAWSATVLWVYQLICGIEALRVTIVAIRRKKKGAKIIFAGV 352 Query: 79 IDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 + + + P FL ++++ +I NF + S G +S Sbjct: 353 VGLIIFTPLGTLAFLFPAIGQLISSNIIALMVNFGILSVTGTVS 396 >gi|45685717|ref|YP_003672.1| NADH dehydrogenase subunit 6 [Thylamys elegans] gi|45598343|emb|CAD48250.1| NADH dehydrogenase subunit 6 [Thylamys elegans] Length = 166 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 40/96 (41%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + +L SF+ I+ + +P+Y SL+ + + + L F+ ++ +VY Sbjct: 1 MKMMIIFLISFLLIVGFVAFASKPSPVYGGLSLVASGGLGCAVVICLEDVFLGLVVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 +G ++V F + M + F F Sbjct: 61 LGGMLVVFGYTAAMATEEYPETWVGNTVAFGMLLFA 96 >gi|326909370|ref|YP_004327639.1| NADH dehydrogenase subunit 6 [Niwaella delicata] gi|300508089|dbj|BAJ11474.1| NADH dehydrogenase subunit-6 [Niwaella delicata] Length = 173 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L I+ V + P ++ L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LLLMALIVGLVAVASNPAPYFAALGLVVAAGVGCGVLISHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + R G++ + IG+ C + Sbjct: 67 FAYSAALAAEPFPESWGDRSVLGYVSVYLIGVGLTLSFFCEGWY 110 >gi|118196948|emb|CAL37045.1| NADH dehydrogenase subunit 6 [Eunectes notaeus] Length = 173 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M++ FF + ++ + ++ Y V SL+ + ++G F+A++ + Sbjct: 1 MLIVDYFFCMIMMFMVVGAVILSMTLVSYYGVISLMGFVFLSCIFMSVMGRTFIALVMYI 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEG 119 VY+G +IV F + I + +V + + F F +G++ +V F F E Sbjct: 61 VYLGGLIVVFGYCISVEKDMGDVYKATMSKFFTYLFVCVGVMVYLWVVVFIGFGSFIVEL 120 Query: 120 ELSRLVFKGNN 130 + V G N Sbjct: 121 DQDCFVPIGVN 131 >gi|5835343|ref|NP_007379.1|ND6_11653 NADH dehydrogenase subunit 6 [Rhinoceros unicornis] gi|2499297|sp|Q96070|NU6M_RHIUN RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1666205|emb|CAA66012.1| NADH subunit 6 [Rhinoceros unicornis] Length = 175 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + +IS + +PIY LI + G+ + G F+ ++ ++Y+G ++V Sbjct: 7 FILSIVFVISFVGFSSKPSPIYGGLVLIVSGGVGCGIVMSFGGSFLGLMVFLIYLGGMLV 66 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 F + M L +F +G+L ++V Sbjct: 67 VFGYTTAMATEQYPEV-WVSNATVLSTFILGVLMEAMLVLYM 107 >gi|295394961|ref|ZP_06805174.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294972294|gb|EFG48156.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 1006 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 8/133 (6%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 + + + ++ + +V + F + GA +A+ +V ++V F+ Sbjct: 598 AAITVPAALAATVAKKRFQAVVIVGVTGYGMVAFFAMQGAPDLALTQALVETITIVV-FI 656 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFF---IGILAAELIVCASNFMVFSA----EGELSRL 124 ++ L +D+ + + + G+L +V A + + GEL+ Sbjct: 657 LVLRRLPVDMAGDPSKNFSPPIRAIIGASFGLLMMVGVVVAMGNRIHTPVSDVWGELAYN 716 Query: 125 VFKGNNVENIGKV 137 V G N+ N+ V Sbjct: 717 VGHGKNIVNVALV 729 >gi|257062367|gb|ACV40199.1| NADH dehydrogenase subunit 6 [Equus caballus] Length = 175 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY L+ + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVVSFVGFSSKPSPIYGGLVLVVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNTTVMGVFLLGLLMEVMLVL 105 >gi|5836084|ref|NP_008067.1|ND6_15107 NADH dehydrogenase subunit 6 [Amblyraja radiata] gi|4406281|gb|AAD19940.1| NADH dehydrogenase subunit 6 [Amblyraja radiata] Length = 172 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 41/93 (44%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ I+ V + +P Y+ L+ + GL + G+ F++++ ++Y+G ++V Sbjct: 6 FIMMLGFIMGLVAVASNPSPYYAALGLVISAGVGCGLLVSSGSSFLSLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 F + ++ + F++G L Sbjct: 66 VFAYTAALVAEPYPESWGDWSVLIYVLFYVGGL 98 >gi|71411790|ref|XP_808129.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70872268|gb|EAN86278.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 887 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 30/156 (19%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + S+ F+ + + + ++ R P SV N G+ L + F+ ++ Sbjct: 657 LSSVVFFFAITVFLRKTLGTISCRAPWRSVSY--TTMFNLDGIMLTMFGYFMLVLL---- 710 Query: 63 VGAVIVFFLFIIMMLDIDI---------------EVAEPRKKRGFLGSFFIGILAAELIV 107 F F ++ E R + + IGI A + Sbjct: 711 -----ATFAFALVYSRWHTREEIEAHVQEFQALPEFWTFRNTTKVVAVYVIGIGQALCLG 765 Query: 108 CASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143 ++ + + IG VLY + Sbjct: 766 YLMKLWIYRTSNVVWNWEASPS----IGAVLYMTFL 797 >gi|307720750|ref|YP_003891890.1| hypothetical protein Saut_0829 [Sulfurimonas autotrophica DSM 16294] gi|306978843|gb|ADN08878.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM 16294] Length = 601 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Query: 32 VFSLIFAFVNAAGLFLLLGAEFVAMITLVV---YV-GAVIVFFLFIIMMLDIDIEVAEPR 87 + +L F+ +G+ L+ + V+ +V G++ V LF++ L I+ + + Sbjct: 5 LINLDMLFMFLSGILLMDYFHVIWSYFRVIEFLHVFGSIAVTVLFVLPFLYKHIKESMVQ 64 Query: 88 KKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 K L G++ +IV + G Sbjct: 65 FKHKSLSGVLFGLVFFIIIVSGVYLFLVGNRG 96 >gi|218782540|ref|YP_002433858.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763924|gb|ACL06390.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 934 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 14/134 (10%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIF-------AFVNAAGLFLLLGAEFV 54 + + FY F + S L + N ++++ LI F+ A F L+ + Sbjct: 51 SLYLILFYYLFFGLLDSRLLADSTVNAVFTIRFLIVGPIITLALFLTYAKFFKLVMQPVL 110 Query: 55 AMITLVVYVGAVIVFFL------FIIMM-LDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 A + + G V+V + F + L + A K F+ + G L Sbjct: 111 AAVMFITGAGIVMVLIIAPPPLNFAYYVGLILVFIHAYTFTKIRFIWASLAGWGLVILYE 170 Query: 108 CASNFMVFSAEGEL 121 + +++++ L Sbjct: 171 IVTVWVIYTPAAIL 184 >gi|38707638|ref|NP_944709.1| NADH dehydrogenase subunit 6 [Platanista minor] gi|38602527|emb|CAD87986.1| NADH6 protein [Platanista minor] Length = 175 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++S V + +P+Y LI G+ L G F+ ++ +VY Sbjct: 1 MMMYIVFIMSIIFVVSIVGVSSKPSPVYGGLGLIVGGGAGCGIILNFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + D + LG+F +G++ L+V Sbjct: 61 LGGMLVVFGHT-TAMAADQHPKVWTSTKIVLGAFLLGLVMEFLVVL 105 >gi|166066479|gb|ABY80743.1| NADH dehydrogenase subunit 6 [Pseudopungtungia nigra] Length = 173 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGVLIGCGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + + A R G++ + +G++ A + + Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLIYLVGVILAAGLFWGEWY 110 >gi|117165272|emb|CAJ88834.1| putative NADH dehydrogenase I complex, subunit [Streptomyces ambofaciens ATCC 23877] Length = 971 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 1/117 (0%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 + + ++ L + VR + +V A LF+ GA +A+ V + ++ F+ Sbjct: 599 AVLTCAAALLCMGVRRRMKAVVLAGLTGYGTALLFVTQGAPDLALTQFCVETVS-MIVFV 657 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 ++ + + E R +R + A +V A+ + +V + Sbjct: 658 LVLRRMPVHFEENYSRWRRLLRMPVALAGGACVALVVWIMAGHRRADSAGAAMVEET 714 >gi|294494337|gb|ADE93032.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494343|gb|ADE93036.1| NADH dehydrogenase subunit 6 [Seriola dumerili] gi|294494379|gb|ADE93060.1| NADH dehydrogenase subunit 6 [Seriola rivoliana] gi|294494382|gb|ADE93062.1| NADH dehydrogenase subunit 6 [Seriola rivoliana] gi|294494385|gb|ADE93064.1| NADH dehydrogenase subunit 6 [Seriola rivoliana] gi|294494388|gb|ADE93066.1| NADH dehydrogenase subunit 6 [Seriola rivoliana] gi|294494391|gb|ADE93068.1| NADH dehydrogenase subunit 6 [Seriola rivoliana] gi|294494394|gb|ADE93070.1| NADH dehydrogenase subunit 6 [Seriola rivoliana] gi|294494397|gb|ADE93072.1| NADH dehydrogenase subunit 6 [Seriola rivoliana] gi|294494400|gb|ADE93074.1| NADH dehydrogenase subunit 6 [Seriola rivoliana] gi|294494403|gb|ADE93076.1| NADH dehydrogenase subunit 6 [Seriola rivoliana] gi|294494406|gb|ADE93078.1| NADH dehydrogenase subunit 6 [Seriola rivoliana] Length = 173 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 33/68 (48%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLVLFSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLF 72 ++V F + Sbjct: 62 GMLVVFAY 69 >gi|126792882|gb|ABO27295.1| NADH dehydrogenase subunit 6 [Guaruba guarouba] Length = 170 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +++S LV + +P Y V L+F V G + LG FV+++ +VY+G + Sbjct: 4 FLMFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLMSLGTSFVSLVLFMVYLGGM 63 Query: 67 IVFFLFIIMM 76 +V F++ + + Sbjct: 64 LVVFVYSVSL 73 >gi|255537321|ref|XP_002509727.1| conserved hypothetical protein [Ricinus communis] gi|223549626|gb|EEF51114.1| conserved hypothetical protein [Ricinus communis] Length = 297 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 13/124 (10%) Query: 37 FAFVNAAGLFLLLGA--EFVAMITLV--VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92 F FV ++LL G ++ + + + VGA + L II+ +++ + + Sbjct: 146 FGFVRVGLIYLLAGFGGSILSALFIQRNISVGASALLTLVIIIAINLAVGILPHVDNFAH 205 Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFI 152 +G F G +I+ F + + + K + + Y Y + + Sbjct: 206 IGGFLTGFFLGFVILLRPQFGWYESRHLPADARVKSRH-KA--------YQYAFLLIAVV 256 Query: 153 LLLS 156 LL++ Sbjct: 257 LLVA 260 >gi|148922738|ref|YP_001293773.1| NADH dehydrogenase subunit 6 [Ilisha elongata] gi|148762644|dbj|BAF64086.1| NADH dehydrogenase subunit 6 [Ilisha elongata] Length = 171 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F +++ V + P + F L+FA + G+ + G F+A++ ++Y+G ++V F++ Sbjct: 10 FGMVVAMVGVASNPAPYFGAFGLVFASGSVCGVLAVYGMPFLALVLFLIYLGGMLVVFVY 69 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 L D+ + + F+ G+ + VC Sbjct: 70 S-SGLAADLFPEDWSEVAVFMSVVLYGVGLVYVGVCV 105 >gi|14039316|gb|AAK53171.1| NADH dehydrogenase subunit 6 [Galaxias postvectis] Length = 173 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + P ++ L+ A G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78 Query: 82 EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 + R G++ ++F+G+LA + + Sbjct: 79 PESWGDRSVLGYVLAYFMGVLATAGLFWGGWY 110 >gi|16357049|ref|NP_443604.1| NADH dehydrogenase subunit 6 [Beryx splendens] gi|16267162|dbj|BAB70298.1| NADH dehydrogenase subunit 6 [Beryx splendens] gi|118457155|gb|ABK92201.1| NADH dehydrogenase subunit 6 [Beryx splendens] Length = 173 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 17 IAVASNPSPYFAALGLVVVAGLGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAE 76 Query: 80 DIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMV 114 + R G++ ++ +G+L + V Sbjct: 77 PYPESWGSRSVMGYVVAYSVGVLLVSGCFWGGWYEV 112 >gi|315427290|dbj|BAJ48902.1| hypothetical protein HGMM_F09F01C38 [Candidatus Caldiarchaeum subterraneum] gi|315428205|dbj|BAJ49789.1| hypothetical protein HGMM_F20G01C38 [Candidatus Caldiarchaeum subterraneum] Length = 82 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 + SV +L+ +F +LGA VA++ L+VY G +I F+F+I++ Sbjct: 29 VRSVIALLGYTATLGVIFFVLGAYPVAILQLLVYAGGIIALFIFVILLT 77 >gi|32709266|gb|AAP86875.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] Length = 173 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 2/120 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F ++ V + +P ++ L+ G+ G F++++ ++Y+G ++V Sbjct: 7 IFLLGLVLGLTAVASNPSPYFAALGLVVVAGMGCGILSGYGGPFLSLVLFLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 +F E R L + IL ++ F + Sbjct: 66 -VFAYSAALAAEPFPETLGSRPVLAFVVVYILGGVILSSLFWGGWFEYAWVPGDEFGDYS 124 >gi|25005996|dbj|BAC23616.1| NADH dehydrogenase subunit 6 [Synbranchus marmoratus] Length = 174 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 36/87 (41%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 + + +P ++ L+ A G+ + G F++++ +VY+G ++V F + + Sbjct: 17 VAIASNPSPYFAALGLVVVSGMACGVLVSHGGPFLSLVLFLVYLGGMLVVFAYSAALAAE 76 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELI 106 + ++G + ++ Sbjct: 77 PYPESWGSWSVFVYMMLYVGGVILAVL 103 >gi|333028806|ref|ZP_08456870.1| putative monovalent cation/H+ antiporter subunit A [Streptomyces sp. Tu6071] gi|332748658|gb|EGJ79099.1| putative monovalent cation/H+ antiporter subunit A [Streptomyces sp. Tu6071] Length = 987 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 + + + + L + VR + +V + + LF++ GA +A+ V +++V Sbjct: 599 AVLTCVVALLCLGVRRRMKAVVLVGLSGYGTGLLFVVQGAPDLALTQFCVETVSMVV--- 655 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 F++++ + + E + + + +L A I C M Sbjct: 656 FVLVLRRMPVHFEENYTRWRRVIRAPVALLGAAAIGCVVWIM 697 >gi|302633035|gb|ADL59811.1| NADH dehydrogenase subunit 6 [Misgurnus anguillicaudatus] Length = 173 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L I+ V + P ++ L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LLLIALIVGLVAVASNPAPYFAALGLVVAAGVGCGVLISHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + R G++ +F+G+ C + Sbjct: 67 FAYSAALAAEPFPESWGDRSVFGYVVIYFVGVGLMMKFFCGGWY 110 >gi|270267488|ref|YP_003331183.1| NADH dehydrogenase subunit 6 [Alepocephalus bairdii] gi|269994122|dbj|BAI50128.1| NADH dehydrogenase subunit 6 [Alepocephalus bairdii] Length = 173 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF I+ V + P ++ F L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLIVGLIAVASNPAPYFAAFGLVVAAGVGCGVLVGHGGAFLSLVLFLIYLGGMLVV 66 Query: 70 FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + E R G++ ++F+G++ A + Sbjct: 67 FAYSAALAAEPFPETWGDRSVIGYVVAYFVGVVLAASWFWGGWY 110 >gi|242097249|emb|CAY39926.1| NADH dehydrogenase subunit 6 [Ursus spelaeus] Length = 153 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +PIY LI + G+ L G F+ ++ +VY+G ++V F + M Sbjct: 3 SPIYGGLVLIISGGVGCGIVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEV-W 61 Query: 87 RKKRGFLGSFFIGILAAELIVC 108 + LG+F +G+L+ LI C Sbjct: 62 VSNKAVLGAFIVGLLSELLIAC 83 >gi|155624803|gb|ABU24814.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K L F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAQLLTAC 105 >gi|89257328|ref|YP_514628.1| NADH dehydrogenase subunit 6 [Rhodeus uyekii] gi|71979974|gb|AAZ57215.1| NADH dehydrogenase subunit 6 [Rhodeus uyekii] Length = 173 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 2/109 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L M I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYVMFSLL-VMLILGLIAVASNPTPYFAALGLVVAAGVGCGILVGSGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + + A R G++ + +G+ A + Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGTRSVLGYVMIYLVGVGLAAGLFWMG 108 >gi|241140664|gb|ACS66815.1| NADH dehydrogenase subunit 6 [Lagocephalus lunaris] Length = 170 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 35/98 (35%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P + SL+ G+ + G F++++ ++Y+G ++V F + Sbjct: 8 LGLVVGMVAVASNPSPYFGALSLVVVSGFGCGVLVWHGGSFLSLVLFLIYLGGMLVVFAY 67 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + + G++ + Sbjct: 68 SAALAAEPYPETLGSWPVLVSMLMYFGVVVLMFVAFLG 105 >gi|119380113|gb|ABL73209.1| NADH dehydrogenase subunit 6 [Meleagris gallopavo] Length = 173 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 45/103 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG F+++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVVGCGWLVNLGVSFISLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G FI ++ +++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFIFVIYVGVVL 104 >gi|5835007|ref|NP_007067.1|ND6_10457 NADH dehydrogenase subunit 6 [Balaenoptera musculus] gi|730209|sp|P41300|NU6M_BALMU RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|414138|emb|CAA51006.1| NADH-ubiquinone oxidoreductase subunit 6 [Balaenoptera musculus] Length = 175 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS V + +PIY LI G+ L G F+ ++ ++Y Sbjct: 1 MVTYIVFVLSIIFVISFVGVSSKPSPIYGGLGLIVGGGAGCGVVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G++ LIV Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFILGLVVESLIVI 105 >gi|288904159|ref|YP_003434427.1| NADH dehydrogenase subunit 6 [Beryx mollis] gi|115279600|gb|ABI85290.1| NADH dehydrogenase subunit 6 [Beryx mollis] Length = 173 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 17 IAVASNPSPYFAALGLVVVAGLGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAE 76 Query: 80 DIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMV 114 + R G++ ++ +G+L + V Sbjct: 77 PYPESWGSRSVVGYVVAYSVGVLLVSGCFWGGWYEV 112 >gi|126215513|ref|YP_001054761.1| NADH dehydrogenase subunit 6 [Anomalurus sp. GP-2005] gi|118140639|emb|CAJ43823.1| NADH dehydrogenase subunit 6 [Anomalurus sp. GP-2005] Length = 175 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + YL S + ++S V + +PIY L+ G+ L G F+ ++ +VY Sbjct: 1 MLTYVIYLLSIIFVLSFVGVSSKPSPIYGGLGLVVGGGVGCGIVLGYGGSFLGLLVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + + + + LG+F + +L ++ + Sbjct: 61 LGGMLVVFGYT-TAMAAEEYPDSLKSNVLMLGAFVVTLLLEFMLYMWGVY 109 >gi|326909342|ref|YP_004327613.1| NADH dehydrogenase subunit 6 [Rana ishikawae] gi|300508176|dbj|BAJ10924.1| NADH dehydrogenase subunit 6 [Rana ishikawae] Length = 166 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 ++ V + +P Y+ L++ + + G F++++ ++Y+G ++V F + Sbjct: 5 LCLLVGLLAVASNPSPYYAALGLVWGSGMGCLVLVKGGVNFLSLVLFLIYLGGMMVVFAY 64 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 ++ A + IG L ++ + V + GE+ L G Sbjct: 65 CAALVAEPYPEAWGSR-------VVIGYLVTYNVLLLILWGVLAEHGEMKVLSEGGG 114 >gi|222834571|ref|YP_002586788.1| NADH dehydrogenase subunit 6 [Eutaeniophorus festivus] gi|222835112|ref|YP_002586814.1| NADH dehydrogenase subunit 6 [Ataxolepis apus] gi|222051598|dbj|BAH15283.1| NADH dehydrogenase subunit 6 [Eutaeniophorus festivus] gi|222051626|dbj|BAH15309.1| NADH dehydrogenase subunit 6 [Ataxolepis apus] Length = 173 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 2/104 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + ++ V + +P ++ L+ GL + G F++++ ++Y+G Sbjct: 2 TYLMSFLLVGLVVGLIAVASNPSPFFAALGLVVVAGLGCGLLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 ++V +F E G FI + L Sbjct: 62 GMLV--VFAYSAALAAEPFPESWGNWSVFGQAFIYFMGVALAFW 103 >gi|148274179|ref|YP_001220615.1| hypothetical protein pAb5S9_16 [Aeromonas bestiarum] gi|146453410|gb|ABQ41452.1| TraG [Aeromonas bestiarum] Length = 837 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 2 VMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGA---EFVAMIT 58 +M + FFYL + +NP+ +L +F+ + + +LL + Sbjct: 237 IMTAWFFYLILICFFGAYIAYKRRQNPVLVALALGLSFLPTSVVMMLLYIFIPQIPGFAM 296 Query: 59 LVVYVGAVIVFFLFIIMMLDI 79 L + VG + +L + + Sbjct: 297 LAITVGGTVATYLNAGKVFNW 317 >gi|241203718|ref|YP_002974814.1| membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857608|gb|ACS55275.1| membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 779 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 37 FAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF 96 A + + F+++G +V +G VF+LF +M I + RK Sbjct: 1 MAIIVTSIFFIIVGLTLSGGGLWLVTLGG-SVFYLFAGLMFLITAGLLLMRKAVALW--- 56 Query: 97 FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYA 143 + A L+V A + ++ + +L +G + +G L T + Sbjct: 57 ----VYAVLVVAALAWAIWEVGFDWWQLGPRGGMIILLGLWLLTPWI 99 >gi|222479145|ref|YP_002565382.1| NADH dehydrogenase-like complex, subunit J2 [Halorubrum lacusprofundi ATCC 49239] gi|222452047|gb|ACM56312.1| NADH dehydrogenase-like complex, subunit J2 [Halorubrum lacusprofundi ATCC 49239] Length = 119 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 13/85 (15%) Query: 97 FIGILAAELIVCASNFMVFSAE-GELSRLVFKGNNVENIGKVLYT------------QYA 143 + +A L+ V SA+ GE++ + V NIG L+ + Sbjct: 12 LVPAVAVGLLFAIMALTVLSADFGEVAAFPADASIVHNIGYALFNLSEYELGSVPSEGFL 71 Query: 144 YPLEISGFILLLSMIGAIVLMLRHR 168 I+ L +++ GAI L R + Sbjct: 72 AAFLIAAVALDVAVDGAIYLAKREK 96 >gi|195933704|ref|YP_002117983.1| NADH dehydrogenase subunit 6 [Echinococcus canadensis] gi|145207833|dbj|BAF56496.1| NADH dehydrogenase subunit 6 [Echinococcus canadensis] gi|145207898|dbj|BAF56556.1| NADH dehydrogenase subunit 6 [Echinococcus canadensis] Length = 151 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+++ F + T Y V ++ A + + +++ G + +++ + Sbjct: 1 MLLEIFIVMYFCVLMFFCF----TSHCIYYCVLLVVNALLASCICYIVYGFSWYSLLLCL 56 Query: 61 VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VY+G V V F+F+ + + + + G F G+L L+ A + FS Sbjct: 57 VYIGGVYVLFIFVSVFGPNSSFVLYRSTWELGLCVLFGFGLLVCGLVYYALIGVEFSG 114 >gi|118573113|sp|Q1X880|POLG_YEFVU RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 gi|63147729|gb|AAY34248.1| polyprotein [Yellow fever virus] Length = 3412 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 14/110 (12%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPI-YSVFSLIFAFVNAAGLFLLLGAEFVAMITL-- 59 M + ++ + +++S +V+ +P S S+ + +G + F+ + Sbjct: 2158 MTIVMLFILAG--LLTSGMVIFFMSPKGMSRMSMAMGTMAGSGYLM-----FLGGVKPTH 2210 Query: 60 VVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 + YV + F++M++ I + + + IGIL +V A Sbjct: 2211 ISYV----MLIFFVLMVVIIPEPGQQRSIQDNQVAYLIIGILTLLSVVAA 2256 >gi|5835776|ref|NP_008586.1|ND6_15061 NADH dehydrogenase subunit 6 [Orycteropus afer] gi|4691365|emb|CAB41632.1| NADH dehydrogenase subunit 6 [Orycteropus afer] Length = 173 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 42/103 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY LI + GL + G F+ ++ +VY+G ++V Sbjct: 6 FMLSVILAVGFVGFSSKPSPIYGGLCLIVSGGVGCGLVINFGGSFLGLMVFLVYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + M + A FL ++ LI+ + Sbjct: 66 VFGYTTAMATEEYPEAWVSDVVVFLSLCVGLMMEFGLIMWLVS 108 >gi|62184464|ref|YP_220613.1| NADH dehydrogenase subunit 6 [Salanx ariakensis] gi|58430885|dbj|BAD89226.1| NADH dehydrogenase subunit 6 [Salanx ariakensis] Length = 173 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 6/118 (5%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + P ++ L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLMGLVLGLVAVASNPAPYFAALGLVVAAGAGCGVLVGHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 F + + AEP + S +L L+V + + E S +V Sbjct: 67 FAYSAAL------AAEPYPETWGDRSVLGYVLGYLLVVMVTAGWLSGGWYESSWVVVD 118 >gi|318057952|ref|ZP_07976675.1| putative monovalent cation/H+ antiporter subunit A [Streptomyces sp. SA3_actG] Length = 987 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 + + + + L + VR + +V + + LF++ GA +A+ V +++V Sbjct: 599 AVLTCVVALLCLGVRRRMKAVVLVGLSGYGTGLLFVVQGAPDLALTQFCVETVSMVV--- 655 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM 113 F++++ + + E + + + +L A I C M Sbjct: 656 FVLVLRRMPVHFEENYTRWRRVIRAPVALLGAAAIGCVVWIM 697 >gi|242610097|ref|YP_003001980.1| NADH dehydrogenase subunit 6 [Taenia multiceps] gi|239997762|gb|ACS37256.1| NADH dehydrogenase subunit 6 [Taenia multiceps] Length = 150 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 5/112 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MV++ L + F + + S ++ Y V +I A V+ +L+ G + +++ + Sbjct: 1 MVLEILVTFYFFILLLFS----LSSHCVYYCVLLVINALVSCLICYLVYGFSWYSLVFCL 56 Query: 61 VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 VYVG V + F+F+ + + + + + F IG+L L N Sbjct: 57 VYVGGVYILFIFVSVFNPNDSFAIYHKVGESSIVLCFVIGLLCMCLFYSLVN 108 >gi|195379302|ref|XP_002048419.1| GJ11362 [Drosophila virilis] gi|194155577|gb|EDW70761.1| GJ11362 [Drosophila virilis] Length = 903 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 14/126 (11%) Query: 3 MQSLFFYLFSFMAIISSFLV--VTVRNP-----IYSVFSLIFAFVNAAGLFLLLGAEFVA 55 M + F++ F+ + L+ V R + ++ ++ A ++ L+ V Sbjct: 109 MDLIIFFVICFVLLWLFILIGSVLPRKLDLTLDV-AILFIVGFLFLAIAIYFLMYRFLVH 167 Query: 56 MITL---VVYVGAVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCA 109 + + +V+ AV + LF +M I AE R LGS + + Sbjct: 168 QVEIHSYIVFEVAVTIIILFFVMYHAQTINGGRFAEMRLNDALLGSLILFHDFLIIYWLT 227 Query: 110 SNFMVF 115 + + Sbjct: 228 FYWQIL 233 >gi|299829142|ref|YP_003735154.1| NADH dehydrogenase subunit 6 [Rhinochimaera pacifica] gi|298110941|gb|ADI57890.1| NADH dehydrogenase subunit 6 [Rhinochimaera pacifica] Length = 173 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 62/152 (40%), Gaps = 4/152 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRN-PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++F + + I + V P + F L+ + GL G F++ + ++Y+G Sbjct: 2 IYFVILMLVCFIMGLVAVASNPAPYFGAFGLVVSAAVGCGLLASHGTSFLSFVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG--ELS 122 ++V F++ + + + ++ + ++ ++ + + G E S Sbjct: 62 GMLVVFVYSAALTAEPFPKSWWDRSVLINVLLYLAGVGVGVLYFYGDWNMLNWLGVDEFS 121 Query: 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILL 154 L ++ ++Y+ L ++G+ILL Sbjct: 122 GLSLWRGDLSGT-SLMYSSGVLLLILAGWILL 152 >gi|14039352|gb|AAK53189.1| NADH dehydrogenase subunit 6 [Galaxias anomalus] Length = 173 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + P ++ L+ A G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78 Query: 82 EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 + R G++ ++F+G+L + + Sbjct: 79 PESWGDRSVLGYVLAYFVGVLVTAGLFWGGWY 110 >gi|229924024|ref|YP_002887570.1| NADH dehydrogenase subunit 6 [Makaira mazara] gi|229619920|dbj|BAH58277.1| NADH dehydrogenase subunit 6 [Makaira mazara] Length = 173 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 13/113 (11%), Positives = 40/113 (35%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLILLSFVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + + ++ + + + S Sbjct: 62 GMLVVFAYSAALAAEPYPETWGSRPVVMYMVVYMVGVVLVSGLFWGGWYESSW 114 >gi|14039312|gb|AAK53169.1| NADH dehydrogenase subunit 6 [Galaxias fasciatus] Length = 173 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + P ++ L+ A G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78 Query: 82 EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 + R G++ ++F+G+L + + Sbjct: 79 PESWGDRSVLGYVLAYFVGVLLTGGLFWGGWY 110 >gi|11499411|ref|NP_070650.1| F420H2:quinone oxidoreductase, 16.5 kDa subunit, putative [Archaeoglobus fulgidus DSM 4304] gi|24638412|sp|O28452|Y1823_ARCFU RecName: Full=Uncharacterized protein AF_1823 gi|2648721|gb|AAB89426.1| F420H2:quinone oxidoreductase, 16.5 kDa subunit, putative [Archaeoglobus fulgidus DSM 4304] Length = 154 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 4/110 (3%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + +L + A+ SS V+ ++ Y+ + + A ++ + V +I + Sbjct: 1 MNIDTLIIAVAGLFAVASSIGVLLTKDNFYAALYMSVTMLFVAAIYAAFNIQPVVVIIAL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 ++VGAV + + + + RK F I + A + AS Sbjct: 61 IFVGAVGI----VTVAIAATYRAGVSRKVNIFWVVPVIVVFAILALAYAS 106 >gi|37596557|gb|AAQ95039.1| NADH dehydrogenase subunit 6 [Heteromunia pectoralis] Length = 159 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + +P Y V L+ A V G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 21 SNPSPYYGVMGLVVAAVAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL 73 >gi|14010677|ref|NP_114358.1| NADH dehydrogenase subunit 6 [Nycticebus coucang] gi|13940443|emb|CAC38001.1| NADH subunit 6 [Nycticebus coucang] Length = 175 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L S + ++ + +PIY F LI + G+ + G F+ ++ +VY+G ++V Sbjct: 7 LLSVLFVLGFVGFSSKPSPIYGGFGLIISGGVGCGIVMGFGGSFMGLMVFLVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 F + M + + G LG+ +G+ ++V + Sbjct: 67 FGYTTAMATEEYPESWGSSV-GILGALVLGMAVEMILVLLAG 107 >gi|25057343|ref|NP_739800.1| NADH dehydrogenase subunit 6 [Melanotaenia lacustris] gi|25005717|dbj|BAC23370.1| NADH dehydrogenase subunit 6 [Melanotaenia lacustris] Length = 173 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 6 LFFYLFSFM--AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 + F++FS + ++ V + +P ++ L+ G+ + G F+++I ++Y+ Sbjct: 1 MVFFMFSLLFGLVLGLAAVASNPSPYFAALGLVVVAGTGFGVLVGHGGSFLSLILFLIYL 60 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 G ++V +F E LG + +L ++ + + Sbjct: 61 GGMLV--VFAYSAALAAEPYPEGWGSWPVLGMMLVYLLGVGVVAGGFWGGWYEGSWISAD 118 Query: 124 LVFKGN 129 + + + Sbjct: 119 ELSEVS 124 >gi|109689677|ref|YP_659549.1| NADH dehydrogenase subunit 6 [Squalogadus modificatus] gi|109452347|dbj|BAE96382.1| NADH dehydrogenase subunit 6 [Squalogadus modificatus] Length = 173 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 35/100 (35%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 I V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + Sbjct: 10 IGVIFGVISVASNPSPYFAALGLVLLAGVGCGILIGHGGSFLSLVLFLIYLGGMLVVFAY 69 Query: 73 IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 + A + ++ L + Sbjct: 70 CAALAAEPYPEAWGEWSILGSVLGYFSLVLGALFWFVGGW 109 >gi|53686514|ref|YP_097126.1| NADH dehydrogenase subunit 6 [Plethodon petraeus] gi|51979895|gb|AAU20563.1| NADH dehydrogenase subunit 6 [Plethodon petraeus] Length = 171 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 II ++ + +P ++ L+ V G+ + +G F++++ +++Y+G ++V F + Sbjct: 12 LIIGFIIMASNPSPYFAALGLVMGAVCGCGILVSVGVSFLSLVLMLIYLGGMLVVFAYAA 71 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + L + + + + A + ++F Sbjct: 72 SLAA--ESYPKLWTNWFVLMYAIMVCVGGFIYILAGDVLIFDG 112 >gi|255077699|gb|ACU00337.1| NADH dehydrogenase subunit 6 [Siren intermedia] Length = 171 Score = 34.6 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 54/138 (39%), Gaps = 1/138 (0%) Query: 11 FSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 S + + + V+ +P ++ F L+ + V+ + + LG F++++ ++VY+G ++V Sbjct: 7 LSVLGLFVGLIAVSANPSPYFAAFGLVVSAVSGCLMLVFLGISFLSLVLMLVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 F + + A + +L + + +L+ + GN Sbjct: 67 FAYSASLAADPYPNAWGDLSVVLYMIMYFLVLIFMYFINFDFGIEVIFSWDLTCFLGIGN 126 Query: 130 NVENIGKVLYTQYAYPLE 147 + +G++ Sbjct: 127 DWGGVGEMYLGGGLLLFI 144 >gi|197311082|ref|YP_002154489.1| NADH dehydrogenase subunit 6 [Tylochromis polylepis] gi|197304637|dbj|BAG69561.1| NADH dehydrogenase subunit 6 [Tylochromis polylepis] Length = 173 Score = 34.6 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 ++F F ++ V + +P ++ L+ G+ + G F+++I ++Y+G + Sbjct: 4 IMFMFLFGLVLGLAAVASNPSPYFAALGLVAVAGMGCGVLVGHGGSFLSLILFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + + AEP + + + VC + +S E + + Sbjct: 64 LVVFAYSAAL------AAEPYPESWGSWPVLGAMTVYVVGVCGAAGFFWSGWYEGTWVSA 117 Query: 127 K 127 Sbjct: 118 D 118 >gi|38639894|ref|NP_943615.1| NADH dehydrogenase subunit 6 [Erpetoichthys calabaricus] gi|38304769|gb|AAR16114.1| NADH dehydrogenase subunit 6 [Erpetoichthys calabaricus] Length = 167 Score = 34.6 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 47/110 (42%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + +FS M +IS V + +P ++ L+ G+ G F++MI ++Y+G Sbjct: 2 VMMIVFSVMFLISLIAVASNPSPYFAALGLMIGAGVGCGMLTQFGMTFLSMILFLIYLGG 61 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F + + A + ++ ++ ++ ++F F Sbjct: 62 MLVVFAYSAALAAEPYPSAWGSLEVFSYVVGYLMLVVVMWMLLVNDFGAF 111 >gi|21492456|ref|NP_659336.1| NADH dehydrogenase subunit 6 [Lepus europaeus] gi|21425405|emb|CAD13292.1| NADH dehydrogenase subunit 6 [Lepus europaeus] Length = 174 Score = 34.6 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L S M +I + +PIY LI + G+ L G F+ ++ ++Y+G ++V Sbjct: 6 FLLSVMFVIGFVGFASKPSPIYGGLGLIVSGGVGCGIILSFGGSFLGLMMFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 F + M + +L A L++ + Sbjct: 66 VFGYTTAMATEEYPETWGSNIMILSMLVLGVLLEAGLVMFMA 107 >gi|116734764|ref|YP_842398.1| NADH dehydrogenase subunit 6 [Micrastur gilvicollis] gi|109676656|gb|ABG37745.1| NADH dehydrogenase subunit 6 [Micrastur gilvicollis] Length = 172 Score = 34.6 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 40/94 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ + V + +P Y V L+ V G + LG F++++ +VY+G Sbjct: 2 TYFVIFLGVCFVLGALAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVSFISLVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFI 98 ++V F++ + + A G FI Sbjct: 62 GMLVVFVYSVSLAADPFPEAWVDWHVVVYGMGFI 95 >gi|227502037|ref|ZP_03932086.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A [Corynebacterium accolens ATCC 49725] gi|227077192|gb|EEI15155.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A [Corynebacterium accolens ATCC 49725] Length = 1002 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 1/110 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + + ++++ N + +V + + + +F + GA +A+ L+ ++V Sbjct: 611 VAAIIMMVAAIAATVTDNRLSAVIIVGITGYSLSFVFAIHGAPDLALTQLLTET-IIMVL 669 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 F+ ++ + E + K +G IV SAE Sbjct: 670 FMLVLRRIPASTEWKQDPKMGRLRAWLSVGTGLTVTIVAMFAINARSAEP 719 >gi|192293720|ref|YP_001994443.1| NADH dehydrogenase subunit 6 [Bathytroctes microlepis] gi|190715126|dbj|BAG49369.1| NADH dehydrogenase subunit 6 [Bathytroctes microlepis] Length = 173 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 46/104 (44%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF I+ V + P ++ F L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LFLLGLIVGLIAVASNPAPYFAAFGLVVAAGVGCGVLVGHGGAFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + R G++ ++ +G++ A + Sbjct: 67 FAYSAALAAEPFPESWGDRSVAGYVVAYLVGVMLAAGWFWGGWY 110 >gi|14193057|ref|NP_115847.1| NADH dehydrogenase subunit 6 [Iguana iguana] gi|14161125|emb|CAC37094.2| NADH dehydrogenase subunit 6 [Iguana iguana] Length = 174 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVV 61 M F LF ++ + V +P + L+ + G+ + G FV+++ ++ Sbjct: 1 MAYFLFILF--FCLVGGLMAVASNPSPYFGAAGLVVSAAVGCGVLVGFGGSFVSLVLFLI 58 Query: 62 YVGAVIVFFLFIIMMLDIDIEVAEPRKKRG--FLGSFFIGILAAELIVCASNFMVFSAEG 119 Y+G ++V F + + + + G +G F+ + L+ F + G Sbjct: 59 YLGGMLVVFAYSVALASEPYPETWGNRSVGLYLVGYLFLIFVLWGLLGGEWGFSGYGLGG 118 >gi|107991016|ref|YP_626542.1| NADH dehydrogenase subunit 6 [Echinococcus granulosus] gi|14009623|gb|AAK51687.1| NADH dehydrogenase subunit 6 [Echinococcus granulosus] Length = 151 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 5/118 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+++ F + + T Y V ++ A + + +L+ G + +++ + Sbjct: 1 MLLEVFIVMYFCVLVLFCF----TSHCIYYCVMLVVNALLASCICYLVYGFSWYSLLLCL 56 Query: 61 VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVG V V F+F+ + + + + + G F G+ LI FS Sbjct: 57 VYVGGVYVLFIFVSVFSPNSNFVLYYSVWEVGICLWFGFGLFICVLIYYLLVGSEFSG 114 >gi|242624423|ref|YP_003002337.1| NADH dehydrogenase subunit 6 [Branchiostegus argentatus] gi|193875971|gb|ACF24639.1| NADH dehydrogenase subunit 6 [Branchiostegus argentatus] Length = 173 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 36/96 (37%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V +P ++ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VACNPSPYFAALGLVGVAGLGCGVLVCHGGSFLSLVLFLIYLGGMLVVFAYTAALAAEPF 78 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + G ++G + + + S Sbjct: 79 PEGWGSGRVMVAGVVYMGGVLWSMYYAFGQWHEASW 114 >gi|222836329|ref|YP_002586840.1| NADH dehydrogenase subunit 6 [Procetichthys kreffti] gi|222051528|dbj|BAH15218.1| NADH dehydrogenase subunit 6 [Procetichthys kreffti] Length = 173 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 39/116 (33%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF F + V + +P ++ L+ G+ G F++++ ++Y+G Sbjct: 2 TYIMSLFLFGLVFGLVAVASNPSPYFAALGLVVVAGLGCGVLAGHGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120 ++V F + + + ++ + N+ S Sbjct: 62 GMLVVFAYSAALAAEPYPEGWGNRSVLVYVVVYLVGVVLVSFYFWGNWYEASWVPS 117 >gi|197253945|ref|YP_002149689.1| NADH dehydrogenase subunit 6 [Pseudopungtungia nigra] gi|171676005|gb|ACB49315.1| NADH dehydrogenase subunit 6 [Pseudopungtungia nigra] Length = 173 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGVLIGCGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112 +G ++V F + + A R G++ + +G++ A + + Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGSRAVAGYVLIYLVGVILAAGLFWGEWY 110 >gi|253960489|dbj|BAH84969.1| NADH dehydrogenase subunit 6 [Oryzias celebensis] Length = 173 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 39/109 (35%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YLF ++ + + +P ++ L+ G+ G F+++I ++Y+G ++V Sbjct: 6 YLFIMGLVLGLAAIASNPSPYFAALGLVLVAGMGCGMLAGHGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L ++ I+ + S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSLLMMLYLFIVGLMGSYLCEGWFEGSW 114 >gi|227122225|gb|ACP19601.1| NADH dehydrogenase subunit 6 [Callicebus donacophilus] Length = 180 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 1/117 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F S M ++ + +PIY L+F+ + L LG +V ++ ++Y Sbjct: 1 MTYVLFS-LSIMLVMGFMGFSSKPSPIYGGLVLVFSGAVGCAITLYLGGSYVGLMVFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +G ++V F + M + + I+ ++ + + EG Sbjct: 60 LGGMMVVFGYTAAMAIDEHPESWLSSMDILGTMLMGLIMEFTMVFLLGGDPIKTVEG 116 >gi|254409466|ref|ZP_05023247.1| dolichyl-phosphate-mannose-protein mannosyltransferase [Microcoleus chthonoplastes PCC 7420] gi|196183463|gb|EDX78446.1| dolichyl-phosphate-mannose-protein mannosyltransferase [Microcoleus chthonoplastes PCC 7420] Length = 963 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 19/124 (15%) Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA---SNFMVFSAEG---- 119 +FFLFI ++ I R+ G L +G+L + L+ +N+++ G Sbjct: 245 ALFFLFIPIV--WVIVGTIRRRYWGRLVQLIVGLLVSGLVFAPWYRTNWLLILTSGKRAT 302 Query: 120 ---ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI---KR 173 ++ N +E + Y + P +S +LL+ ++G ++L R + + +R Sbjct: 303 LDSAIAEGDPALNTLEA--WLYYGK-ILPFLVSWVLLLVPIVG-LILYWRKKERVWGRER 358 Query: 174 QDIS 177 +D+ Sbjct: 359 EDVF 362 >gi|134303115|ref|YP_001122872.1| NADH dehydrogenase subunit 6 [Macrochelys temminckii] gi|116739705|gb|ABK20577.1| NADH dehydrogenase subunit 6 [Macrochelys temminckii] Length = 176 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 38/88 (43%) Query: 27 NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 +P Y V SL+ + + +++G FV+++ ++Y+G ++V F + ++ V Sbjct: 24 SPYYGVLSLVLGAASGCAVLVVMGGSFVSLVLFLIYLGGMLVLFAYSAALVAEPRPVGFG 83 Query: 87 RKKRGFLGSFFIGILAAELIVCASNFMV 114 R I +L + ++ Sbjct: 84 LDYRESAFYVVIYVLCIVFVGVCYCWVW 111 >gi|73962215|ref|XP_547676.2| PREDICTED: similar to CG8486-PA, isoform A [Canis familiaris] Length = 2714 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 13/127 (10%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMIT--LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92 L+ A +++ G F +V+Y +V FLF + + + E R + F Sbjct: 664 LVVAMFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYE-WWRRILKYF 722 Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK------VLYTQYAYPL 146 S I + + + F F + + K +E++G L+T+ P Sbjct: 723 WMSVVIYTMLVLIFIYTYQFENFPGLWQ-NMTGLKKEKLEDLGLKQFTVAELFTRIFIP- 780 Query: 147 EISGFIL 153 + F+L Sbjct: 781 --TSFLL 785 >gi|307589139|gb|ADN64335.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] Length = 173 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 1/115 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLIAVASNPTPYFAALGLVVAAGVGCGILVGYGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + A + ++ + + + S Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGSRSVVGYVLVYLLGVVLAAGLFWGGWYEGSW 114 >gi|307589137|gb|ADN64334.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] Length = 173 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 1/115 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLIAVASNPTPYFAALGLVVAAGVGCGILVGYGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + A + ++ + + + S Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGSRSVVGYVLVYLLGVVLAAGLFWGGWYEGSW 114 >gi|52221036|ref|YP_086891.1| NADH dehydrogenase subunit 6 [Geocalamus acutus] gi|47026724|gb|AAT08540.1| NADH dehydrogenase subunit 6 [Geocalamus acutus] Length = 178 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL M ++S V P + L+ A + + + LLG F++++ L++Y+G Sbjct: 2 AYLMYLLGLMFVVSIMGVAMHPLPQFGAGGLVVATLFSCAMLALLGGSFISIVLLLIYLG 61 Query: 65 AVIVFFLFIIMM 76 ++V F + + + Sbjct: 62 GMLVVFAYSVAL 73 >gi|66800793|ref|XP_629322.1| hypothetical protein DDB_G0293176 [Dictyostelium discoideum AX4] gi|60462738|gb|EAL60940.1| hypothetical protein DDB_G0293176 [Dictyostelium discoideum AX4] Length = 1692 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 14/119 (11%) Query: 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLL----------GAEFVAMI 57 FY +AII ++ ++ + +IF F+ ++ L A+++ ++ Sbjct: 1428 FYQLIIVAIIRFKKIIHRFELVHLLLFMIFVFLLVRTIYFFLLPSGKLSNSAVADYILVV 1487 Query: 58 TLVVYVGA----VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 + + +IV + I++++ + + + + I+ L+ F Sbjct: 1488 LPTFFYFSCFTIIIVLWYVIVVLVLKNNSASNFSNRLFSMVGLVNFIIYLLLVAIVLVF 1546 >gi|229929323|ref|YP_002887609.1| NADH dehydrogenase subunit 6 [Rhinoceros sondaicus] gi|229473109|gb|ACQ73083.1| NADH dehydrogenase subunit 6 [Rhinoceros sondaicus] Length = 175 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 1/108 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +IS + +PIY L+ + G+ + G F+ ++ ++Y Sbjct: 1 MMMYIGFILSIVFVISFVGFSSKPSPIYGGLVLVMSGGIGCGIVMSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + M A L +F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEA-WVSNATVLSAFILGVLMEVMLVLYM 107 >gi|155624671|gb|ABU24715.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K L F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105 >gi|32347361|gb|AAP33905.1| NADH dehydrogenase subunit 6 [Aotus trivirgatus] gi|227122197|gb|ACP19575.1| NADH dehydrogenase subunit 6 [Aotus lemurinus] Length = 177 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 1/107 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + +L S + ++ + +PIY LIF+ + L G ++ ++ ++Y+G Sbjct: 2 TYALFLLSIILVMGFVGFSSKPSPIYGGLVLIFSGAVGCMITLYFGGSYMGLMVFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 ++V F + M ID LG F +G++ +V Sbjct: 62 GMMVVFGYTAAM-AIDEHPETWVSSTDILGIFMLGLMMEMTMVALLG 107 >gi|74315089|ref|YP_313653.1| NADH dehydrogenase subunit 6 [Merlangius merlangus] gi|66802169|gb|AAY56620.1| NADH dehydrogenase subunit 6 [Merlangius merlangus] Length = 173 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 ++ V + +P ++ L+ + + G F++++ ++Y+G ++V F + Sbjct: 12 MVLGVISVASNPSPYFAALGLVLVAGVGCVVLMGHGGSFLSLVLFLIYLGGMLVVFAYCA 71 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + AEP + S +L L+V + + E + Sbjct: 72 AL------AAEPYPEAWGEWSVLGAVLGYLLLVVGAGSWFWGGWYEGMWVPVD 118 >gi|256427151|ref|YP_003126925.1| NADH dehydrogenase subunit 6 [Platax orbicularis] gi|256353303|dbj|BAH97816.1| NADH dehydrogenase subunit 6 [Platax orbicularis] Length = 173 Score = 34.6 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ + G F+++I ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVVVAGLGCGVLVGHGGSFLSLILFLIYLGGMLVVFAYSAAL----- 73 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 AEP + S +LA ++V + + E+S + Sbjct: 74 -AAEPYPESWGDWSVGGSMLAYAVVVALVSGLFLGGWYEVSWVPAD 118 >gi|291612272|ref|YP_003540706.1| NADH dehydrogenase subunit 6 [Hypsiglena chlorophaea chlorophaea] gi|189164570|gb|ACD77499.1| NADH dehydrogenase subunit 6 [Hypsiglena chlorophaea chlorophaea] Length = 169 Score = 34.6 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F + I + P V +L+ ++LG F A++ +VY+G + Sbjct: 4 LFSVVMVFVIFGVLALGVAVVPYQGVVALMGVSFICCVFMVMLGRTFAALVMYIVYLGGL 63 Query: 67 IVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSR 123 IV F + + + +++ V + FL F+G L L+ +V+ +L Sbjct: 64 IVVFSYCVSVEKDEVDDCGVVGFKYFVIFLFVLFVGFLWWVLVGEVGGLLVYVNWEDLVC 123 Query: 124 LVFKGNNV 131 L G++V Sbjct: 124 LEVNGSSV 131 >gi|220908918|ref|YP_002484229.1| hypothetical protein Cyan7425_3547 [Cyanothece sp. PCC 7425] gi|219865529|gb|ACL45868.1| putative multicomponent Na+:H+ antiporter subunit B [Cyanothece sp. PCC 7425] Length = 198 Score = 34.6 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+ + + +++ +V+ NP +++ AA + +LGA VA+ +V G ++ Sbjct: 6 YMITALLPLAAVMVMFQTNPYHALVMRGILGAVAALTYSVLGAPDVALTEALV--GTLLA 63 Query: 69 FFLFII 74 L+ + Sbjct: 64 VLLYAV 69 >gi|165932533|ref|YP_001650773.1| NADH dehydrogenase subunit 6 [Solenostomus cyanopterus] gi|154758748|dbj|BAF74897.1| NADH dehydrogenase subunit 6 [Solenostomus cyanopterus] Length = 174 Score = 34.6 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 4/120 (3%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 ++ V + +P ++ L+ + L L G F++++ ++Y+G ++V F + Sbjct: 12 ILVGFIAVASNPSPYFAALGLVVVSGSGCALLLDQGGSFLSLVLFLIYLGGMLVVFAYSA 71 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENI 134 + A G + ++ + +A ++ + G V G + E I Sbjct: 72 ALSAEPFPSAWGMWGVGLNVAAYLFMFSAMVV----GLRIMGLGGSEVSQVVLGGSTEVI 127 >gi|157736269|ref|YP_001491303.1| NADH dehydrogenase subunit 6 [Parapristipoma trilineatum] gi|139000635|dbj|BAF51827.1| NADH dehydrogenase subunit 6 [Parapristipoma trilineatum] Length = 173 Score = 34.6 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 39/100 (39%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 17 IAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAE 76 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 + + ++ +A +C + S G Sbjct: 77 PYPESWGSRPVAVSMLVYMVGVALISGLCWGGWYESSWIG 116 >gi|109689565|ref|YP_659510.1| NADH dehydrogenase subunit 6 [Pygathrix nemaeus] gi|88174314|gb|ABD39316.1| NADH dehydrogenase subunit 6 [Pygathrix nemaeus] gi|325652679|gb|ADZ37175.1| NADH dehydrogenase subunit 6 [Pygathrix nemaeus] Length = 174 Score = 34.6 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 2/107 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L S + ++ + +PIY +L+ + V + L G ++ ++ ++Y Sbjct: 1 MSYILF-LLSVLLVMGFVGFSSKPSPIYGGLALVVSGVIGCAIILSYGGTYMGLMMFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + + I+ LGSF +G+ +V Sbjct: 60 LGGMMVVFGYT-TAMAIEEYPEAWVSGFEVLGSFLVGLAMEVYLVLW 105 >gi|32402565|ref|NP_861513.1| NADH dehydrogenase subunit 6 [Elephantulus sp. VB001] gi|32188020|dbj|BAC78436.1| NADH dehydrogenase subunit 6 [Elephantulus sp. VB001] Length = 175 Score = 34.6 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 18 SSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 + V + +PI+ LI + GL + G F+ ++ +VY+G ++V F + M Sbjct: 15 GAVGVSSKPSPIFGGVGLILSGGVGCGLIVCSGGSFLGLMVFLVYLGGMLVVFGYTTAMA 74 Query: 78 DIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 + A K LG +G L LI+ Sbjct: 75 TEEYPEAWGSNK-VILGGMLVGALFELLIMVWL 106 >gi|25057667|ref|NP_739917.1| NADH dehydrogenase subunit 6 [Ostichthys japonicus] gi|25005885|dbj|BAC23513.1| NADH dehydrogenase subunit 6 [Ostichthys japonicus] Length = 173 Score = 34.6 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 6/106 (5%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVGVAGLGCGVLVGYGGPFLSLVLFLIYLGGMLVVFAYSAAL----- 73 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 AEP + S +LA + V ++ + E S + Sbjct: 74 -AAEPYPESWGSRSVVGYVLAYLVGVLVASSYFWGGWYEASWVPAD 118 >gi|323690844|ref|YP_004243720.1| NADH dehydrogenase subunit 6 [Meleagris gallopavo] gi|323366907|gb|ADX43876.1| NADH dehydrogenase subunit 6 [Meleagris gallopavo] Length = 173 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 45/103 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG F+++ +VY+G Sbjct: 2 TYFVIFLGICFMLGVLAVASNPSPYYGVVGLVVASVVGCGWLVNLGVSFISLALFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 ++V F++ + + A + G FI ++ +++ Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGDWRVVGYGLGFIFVIYVGVVL 104 >gi|166091635|ref|YP_001654977.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|165935042|gb|ABY74765.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589107|gb|ADN64319.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589109|gb|ADN64320.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589111|gb|ADN64321.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589113|gb|ADN64322.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589115|gb|ADN64323.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589117|gb|ADN64324.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589119|gb|ADN64325.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589121|gb|ADN64326.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589123|gb|ADN64327.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589125|gb|ADN64328.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589127|gb|ADN64329.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589129|gb|ADN64330.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589131|gb|ADN64331.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589133|gb|ADN64332.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589135|gb|ADN64333.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589141|gb|ADN64336.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589143|gb|ADN64337.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589145|gb|ADN64338.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589147|gb|ADN64339.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589149|gb|ADN64340.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589151|gb|ADN64341.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589153|gb|ADN64342.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589155|gb|ADN64343.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589157|gb|ADN64344.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589159|gb|ADN64345.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589163|gb|ADN64347.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589165|gb|ADN64348.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589167|gb|ADN64349.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589169|gb|ADN64350.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589171|gb|ADN64351.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589173|gb|ADN64352.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589175|gb|ADN64353.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589177|gb|ADN64354.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589179|gb|ADN64355.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589181|gb|ADN64356.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589183|gb|ADN64357.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589185|gb|ADN64358.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589187|gb|ADN64359.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589189|gb|ADN64360.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589191|gb|ADN64361.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589193|gb|ADN64362.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589195|gb|ADN64363.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589197|gb|ADN64364.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589199|gb|ADN64365.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589201|gb|ADN64366.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589203|gb|ADN64367.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589205|gb|ADN64368.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589207|gb|ADN64369.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589209|gb|ADN64370.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589211|gb|ADN64371.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589213|gb|ADN64372.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589215|gb|ADN64373.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589217|gb|ADN64374.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589219|gb|ADN64375.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589221|gb|ADN64376.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589223|gb|ADN64377.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|307589225|gb|ADN64378.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] gi|322506178|gb|ADX01633.1| NADH dehydrogenase subunit 6 [Ctenopharyngodon idella] Length = 173 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 1/115 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + ++ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLMAL-VVGLIAVASNPTPYFAALGLVVAAGVGCGILVGYGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + A + ++ + + + S Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGSRSVVGYVLVYLLGVVLAAGLFWGGWYEGSW 114 >gi|154818480|gb|ABS87692.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra] gi|154818484|gb|ABS87695.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra] gi|154818488|gb|ABS87698.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra] gi|154818506|gb|ABS87711.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra] gi|154818514|gb|ABS87717.1| NADH dehydrogenase subunit 6 [Felis silvestris cafra] gi|154818518|gb|ABS87720.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818526|gb|ABS87726.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818530|gb|ABS87729.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818534|gb|ABS87732.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818538|gb|ABS87735.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818542|gb|ABS87738.1| NADH dehydrogenase subunit 6 [Felis silvestris ornata] gi|154818570|gb|ABS87759.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818574|gb|ABS87762.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818578|gb|ABS87765.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818582|gb|ABS87768.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818593|gb|ABS87776.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818597|gb|ABS87779.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818605|gb|ABS87785.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818609|gb|ABS87788.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818613|gb|ABS87791.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818617|gb|ABS87794.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818621|gb|ABS87797.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818625|gb|ABS87800.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818629|gb|ABS87803.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818633|gb|ABS87806.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818637|gb|ABS87809.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818641|gb|ABS87812.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818649|gb|ABS87818.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|154818653|gb|ABS87821.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|155624348|gb|ABU24473.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624352|gb|ABU24476.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624356|gb|ABU24479.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624360|gb|ABU24482.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624364|gb|ABU24485.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624368|gb|ABU24488.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624372|gb|ABU24491.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624376|gb|ABU24494.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624384|gb|ABU24500.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624388|gb|ABU24503.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624392|gb|ABU24506.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624396|gb|ABU24509.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624400|gb|ABU24512.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624404|gb|ABU24515.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624408|gb|ABU24518.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624412|gb|ABU24521.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624416|gb|ABU24524.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624420|gb|ABU24527.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624424|gb|ABU24530.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624428|gb|ABU24533.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624432|gb|ABU24536.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624436|gb|ABU24539.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624440|gb|ABU24542.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624444|gb|ABU24545.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624448|gb|ABU24548.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624456|gb|ABU24554.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624464|gb|ABU24560.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624468|gb|ABU24563.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624472|gb|ABU24566.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624476|gb|ABU24569.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624480|gb|ABU24572.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624484|gb|ABU24575.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624488|gb|ABU24578.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624492|gb|ABU24581.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624496|gb|ABU24584.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624500|gb|ABU24587.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624504|gb|ABU24590.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624508|gb|ABU24593.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624516|gb|ABU24599.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624524|gb|ABU24605.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624528|gb|ABU24608.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624536|gb|ABU24614.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624540|gb|ABU24617.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624544|gb|ABU24620.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624548|gb|ABU24623.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624555|gb|ABU24628.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624559|gb|ABU24631.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624575|gb|ABU24643.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624595|gb|ABU24658.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624611|gb|ABU24670.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624615|gb|ABU24673.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624627|gb|ABU24682.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624631|gb|ABU24685.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624635|gb|ABU24688.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624639|gb|ABU24691.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624647|gb|ABU24697.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624655|gb|ABU24703.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624659|gb|ABU24706.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624663|gb|ABU24709.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624667|gb|ABU24712.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624675|gb|ABU24718.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624679|gb|ABU24721.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624687|gb|ABU24727.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624695|gb|ABU24733.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624703|gb|ABU24739.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624711|gb|ABU24745.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624715|gb|ABU24748.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624719|gb|ABU24751.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624723|gb|ABU24754.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624727|gb|ABU24757.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624735|gb|ABU24763.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624739|gb|ABU24766.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624743|gb|ABU24769.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624747|gb|ABU24772.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624751|gb|ABU24775.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624755|gb|ABU24778.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624763|gb|ABU24784.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624767|gb|ABU24787.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624771|gb|ABU24790.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624775|gb|ABU24793.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624779|gb|ABU24796.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624783|gb|ABU24799.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624787|gb|ABU24802.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624791|gb|ABU24805.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624811|gb|ABU24820.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K L F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105 >gi|154818546|gb|ABS87741.1| NADH dehydrogenase subunit 6 [Felis margarita] gi|154818550|gb|ABS87744.1| NADH dehydrogenase subunit 6 [Felis margarita] gi|154818554|gb|ABS87747.1| NADH dehydrogenase subunit 6 [Felis margarita] gi|154818558|gb|ABS87750.1| NADH dehydrogenase subunit 6 [Felis margarita] gi|154818645|gb|ABS87815.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] gi|155624512|gb|ABU24596.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624571|gb|ABU24640.1| NADH dehydrogenase subunit 6 [Felis silvestris] gi|155624731|gb|ABU24760.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K L F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105 >gi|109689607|ref|YP_659445.1| NADH dehydrogenase subunit 6 [Semnopithecus entellus] gi|88174244|gb|ABD39251.1| NADH dehydrogenase subunit 6 [Semnopithecus entellus] Length = 173 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 1/101 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +L S + I+ + +PIY +LI + + + L G ++ ++ ++Y+G ++V Sbjct: 6 FLLSVLLIMGFVGFSSKPSPIYGGLALIVSGIVGCVIILNYGGTYMGLMMFLIYLGGMMV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 F + + I+ LGS +G+ +V Sbjct: 66 VFGYT-TAMAIEEYPETWVSGFEVLGSLLVGLAMEVGLVLW 105 >gi|288903434|ref|YP_003434154.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709335|gb|AAP86921.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|226346390|gb|ACO49646.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] Length = 173 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 2/120 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F ++ V + +P ++ L+ G+ G F++++ ++Y+G ++V Sbjct: 7 IFLLGLVLGLTAVASNPSPYFAALGLVVVAGMGCGILSGYGGPFLSLVLFLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 +F E R L + IL ++ F + Sbjct: 66 -VFAYSAALAAEPFPETLGSRSVLAFMVVYILGGVILSSLFWGGWFEYAWVPGDEFGDYS 124 >gi|295065690|ref|YP_003587632.1| NADH dehydrogenase subunit 6 [Oreochromis sp. 'red tilapia'] gi|294679499|gb|ADF29543.1| NADH dehydrogenase subunit 6 [Oreochromis sp. 'red tilapia'] Length = 173 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++F F ++ V + +P ++ L+ G+ + G F++++ ++Y+G ++V Sbjct: 6 FMFLFGLVLGLAAVASNPSPYFAALGLVAVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNF 112 F + + G + ++ +G+ AA + + Sbjct: 66 VFAYSAALAAEPYPEGWGSWPVLGVMVAYLVGVCAAAGLFWGGWY 110 >gi|219849785|ref|YP_002464218.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485] gi|219544044|gb|ACL25782.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485] Length = 790 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 5 SLFFY--LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 L FY L + + I + R + ++ ++ + LF+L A +A+ L++ Sbjct: 598 QLQFYEILAASLIPIGVIATIRARTRLGAIIAVGVVGAMVSLLFVLFSAPDLALTQLLIE 657 Query: 63 V-GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 V V + +F ++ + + A ++R + + +G+L L++ + F++ Sbjct: 658 VLSTVFLLLVFSVLPVRFESFSAAWVRRRDAIIATVMGVLMGGLVLAIATNTSFASLAPF 717 >gi|14039391|gb|AAK53208.1| NADH dehydrogenase subunit 6 [Galaxias gollumoides] Length = 173 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Query: 28 PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE-P 86 P ++ L+ A G+ + G F++++ ++Y+G ++V F + + + Sbjct: 25 PYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPESWGD 84 Query: 87 RKKRGFLGSFFIGILAAELIVCASNF 112 R G++ ++F+G+L + + Sbjct: 85 RSVLGYVLAYFVGVLVIAGLFWGGWY 110 >gi|328672364|ref|YP_004362953.1| NAD(P)H-quinone oxidoreductase subunit 6 [Pichia pastoris CBS 7435] gi|308152313|emb|CBI83578.2| NU6M (ND6) subunit of mitochondrial NADH:ubiquinone oxidoreductase (complex I) [Pichia pastoris] gi|328354783|emb|CCA41179.1| NAD(P)H-quinone oxidoreductase subunit 6 [Pichia pastoris CBS 7435] Length = 161 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M ++ L + F ++ISS N S+ L+ + ++ A++ + Sbjct: 1 MNLEILDLSILGFYSLISS-------NSFESIAILVATIMPVITELWYNYSQLFALLYTL 53 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFM-VFSAEG 119 +YVGAV++ F+FI+ +++ E L + + +++ V+ + Sbjct: 54 IYVGAVVILFVFILSVINEKEEYEYEYSGLFILILVLLLDDLDDNESNDNDYNNVYITDY 113 Query: 120 ELSRLVFKGNNVENIGKVLYTQY 142 + +++ IG +L+T+Y Sbjct: 114 ADWFNNYNESDLSVIGNLLFTEY 136 >gi|192288403|ref|YP_001994456.1| NADH dehydrogenase subunit 6 [Gonorynchus abbreviatus] gi|190715140|dbj|BAG49382.1| NADH dehydrogenase subunit 6 [Gonorynchus abbreviatus] Length = 174 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 39/115 (33%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + ++ V + P Y+ L+ A G+ G F+ ++ ++Y Sbjct: 1 MITYLMCVLLCAFVVGLVAVASNPAPYYAALGLVLAAGAGCGVLAGHGGTFLCLVLFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + + L + + C ++ S Sbjct: 61 LGGMLVVFAYSAALAAEPFPETWGDESVMKLVVVYWSCVLGAGAWCWESWHAGSW 115 >gi|154940289|gb|ABS88961.1| NADH dehydrogenase subunit 6 [Sebastes ruberrimus] Length = 115 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF ++ V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TYIMSLFLIGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + G +L + V ++ + + E S + Sbjct: 62 GMLVVFAYSAAL------AAEPYPESWVSGPVVGDMLMYLVGVGVASSVFWGGWYEASWV 115 >gi|52220966|ref|YP_086917.1| NADH dehydrogenase subunit 6 [Bipes biporus] gi|47026780|gb|AAT08592.1| NADH dehydrogenase subunit 6 [Bipes biporus] Length = 172 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 41/97 (42%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y +++ V P ++ +L A + + + + G F+ ++ L++Y+G ++V Sbjct: 6 YFLGVGLLLAVIGVAVNPAPYFAAGALAVAALFGSAILVWCGGLFLPVVLLLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 F + I ++ + + S + ++ + Sbjct: 66 VFAYAIALVPGERAGVYGGWQVWACVSGLVFVVFCLV 102 >gi|295641269|gb|ADG22805.1| NADH dehydrogenase subunit 6 [Nasua nasua] Length = 177 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + ++S + +PIY LI G+ L G F+ ++ ++Y Sbjct: 1 MTVYVVFILSIIFVMSFVGFSSKPSPIYGGLVLIVGGAIGCGIVLCFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + + I+ + L +F +G+L+ L C Sbjct: 61 LGGMLVVFGYT-TAMAIEQYPEVWVSNKAVLVTFVMGLLSELLTAC 105 >gi|37496473|emb|CAD22010.1| NADH dehydrogenase subunit 6 [Tapirus terrestris] Length = 175 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 1/107 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYVVFVLSVIFVIGFVGFSSKPSPIYGGLVLIVSGGVGCGIILNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + M LG+F +G+ ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNVVVLGAFILGLFMEFVLVLW 106 >gi|145207911|dbj|BAF56568.1| NADH dehydrogenase subunit 6 [Echinococcus canadensis] Length = 151 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 5/118 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+++ F + T Y V ++ A + + +++ G + +++ + Sbjct: 1 MLLEIFIVMYFCVLMFFCF----TSHCIYYCVLLVVNALLASCICYMVYGFSWYSLLLCL 56 Query: 61 VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VY+G V V F+F+ + + + + + G F G+L L+ FS Sbjct: 57 VYIGGVYVLFIFVSVFSPNSNFVLYRSTWELGLCVLFGFGLLVCGLVYYVLIGAEFSG 114 >gi|119182333|ref|XP_001242309.1| predicted protein [Coccidioides immitis RS] Length = 446 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 145 PLEISGFIL-LLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 I G IL L++M+ A+ L R ++ +Q E Sbjct: 82 LFIILGLILFLMAMVVAMALGFSSTRLGDIENTEQQKEVRR 122 >gi|32709131|gb|AAP86785.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709134|gb|AAP86787.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709137|gb|AAP86789.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709140|gb|AAP86791.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709143|gb|AAP86793.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709146|gb|AAP86795.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709149|gb|AAP86797.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709152|gb|AAP86799.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709155|gb|AAP86801.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709158|gb|AAP86803.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709161|gb|AAP86805.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709164|gb|AAP86807.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709167|gb|AAP86809.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709170|gb|AAP86811.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709173|gb|AAP86813.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709176|gb|AAP86815.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709179|gb|AAP86817.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709182|gb|AAP86819.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709185|gb|AAP86821.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] gi|32709188|gb|AAP86823.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo] gi|32709191|gb|AAP86825.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo] gi|32709194|gb|AAP86827.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo] gi|32709197|gb|AAP86829.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo] gi|32709200|gb|AAP86831.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo] gi|32709203|gb|AAP86833.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo] gi|32709206|gb|AAP86835.1| NADH dehydrogenase subunit 6 [Hypoplectrus indigo] gi|32709209|gb|AAP86837.1| NADH dehydrogenase subunit 6 [Hypoplectrus guttavarius] gi|32709212|gb|AAP86839.1| NADH dehydrogenase subunit 6 [Hypoplectrus aberrans] gi|32709215|gb|AAP86841.1| NADH dehydrogenase subunit 6 [Hypoplectrus aberrans] gi|32709218|gb|AAP86843.1| NADH dehydrogenase subunit 6 [Hypoplectrus aberrans] gi|32709221|gb|AAP86845.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709224|gb|AAP86847.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709227|gb|AAP86849.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709230|gb|AAP86851.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709233|gb|AAP86853.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709236|gb|AAP86855.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709239|gb|AAP86857.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709242|gb|AAP86859.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709248|gb|AAP86863.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709251|gb|AAP86865.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709254|gb|AAP86867.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709257|gb|AAP86869.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709260|gb|AAP86871.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709263|gb|AAP86873.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] gi|32709269|gb|AAP86877.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709272|gb|AAP86879.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709275|gb|AAP86881.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709278|gb|AAP86883.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709281|gb|AAP86885.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709284|gb|AAP86887.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709287|gb|AAP86889.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709290|gb|AAP86891.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709293|gb|AAP86893.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709296|gb|AAP86895.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709299|gb|AAP86897.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709302|gb|AAP86899.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709305|gb|AAP86901.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709308|gb|AAP86903.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709311|gb|AAP86905.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709314|gb|AAP86907.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709317|gb|AAP86909.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709320|gb|AAP86911.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709323|gb|AAP86913.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709326|gb|AAP86915.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709329|gb|AAP86917.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709332|gb|AAP86919.1| NADH dehydrogenase subunit 6 [Hypoplectrus unicolor] gi|32709338|gb|AAP86923.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709341|gb|AAP86925.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709344|gb|AAP86927.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709347|gb|AAP86929.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709350|gb|AAP86931.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709353|gb|AAP86933.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709356|gb|AAP86935.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709359|gb|AAP86937.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709362|gb|AAP86939.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709365|gb|AAP86941.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709368|gb|AAP86943.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709371|gb|AAP86945.1| NADH dehydrogenase subunit 6 [Hypoplectrus gemma] gi|32709374|gb|AAP86947.1| NADH dehydrogenase subunit 6 [Hypoplectrus sp. 'blue'-MLR-2003] gi|32709377|gb|AAP86949.1| NADH dehydrogenase subunit 6 [Hypoplectrus sp. 'blue'-MLR-2003] gi|32709380|gb|AAP86951.1| NADH dehydrogenase subunit 6 [Hypoplectrus sp. 'blue'-MLR-2003] gi|32709383|gb|AAP86953.1| NADH dehydrogenase subunit 6 [Hypoplectrus sp. 'tan'-MLR-2003] gi|32709386|gb|AAP86955.1| NADH dehydrogenase subunit 6 [Hypoplectrus sp. 'tan'-MLR-2003] gi|32709389|gb|AAP86957.1| NADH dehydrogenase subunit 6 [Hypoplectrus puella] Length = 173 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 2/120 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F ++ V + +P ++ L+ G+ G F++++ ++Y+G ++V Sbjct: 7 IFLLGLVLGLTAVASNPSPYFAALGLVVVAGMGCGILSGYGGPFLSLVLFLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 +F E R L + IL ++ F + Sbjct: 66 -VFAYSAALAAEPFPETLGSRPVLAFMVVYILGGVILSSLFWGGWFEYAWVPGDEFGDYS 124 >gi|19481540|gb|AAL88842.1|AF407109_1 NADH dehydrogenase subunit 6 [Vidua macroura] Length = 159 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 33/55 (60%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL 73 >gi|84488631|ref|YP_448827.1| NADH dehydrogenase subunit 6 [Psammobates pardalis] gi|67005644|gb|AAY62441.1| NADH dehydrogenase subunit 6 [Psammobates pardalis] Length = 174 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 43/108 (39%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F +LF F + V +P Y V SL+ G + +G F++++ ++Y+G + Sbjct: 4 FMFLFGFCFVFWMIGVSCSSSPYYGVLSLVLGAAFGCGALVGMGGSFISLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 +V F + + G ++ + + V S + + Sbjct: 64 LVIFAYSSALAAEPYPGGWGGLGAFIYGLCYLVSVVWLMSVDYSWWSI 111 >gi|146142456|gb|ABQ01710.1| NADH dehydrogenase subunit 6 [Rhodeus uyekii] Length = 173 Score = 34.6 bits (79), Expect = 7.5, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L M I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYVMFSLL-VMLILGLIAVASNPTPYFAALGLVVAAGVGCGILVGSGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + + AEP + S F +L + V + + + E S Sbjct: 60 LGGMLVVFAYSAAL------AAEPFPEAWGARSVFGYVLIYLVGVGLAAGLFWMGWHEGS 113 Query: 123 RLVFK 127 +V Sbjct: 114 WVVVD 118 >gi|269201738|ref|YP_003281007.1| conserved hypothetical protein, transposon-related protein [Staphylococcus aureus subsp. aureus ED98] gi|262074028|gb|ACY10001.1| conserved hypothetical protein, transposon-related protein [Staphylococcus aureus subsp. aureus ED98] Length = 637 Score = 34.6 bits (79), Expect = 7.5, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAE------FVAMITLV 60 F L +A+ FL ++ I+S F+LI F+ A +L+ F A+ + Sbjct: 302 MFTLIITIALSIIFLSISFAKVIFSAFALIL-FLFLAFSWLISFIPGFEISVFKALARTL 360 Query: 61 VYVG-AVIVFFLFIIMMLDIDIE---VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFS 116 Y+ + + FLF+++ IDI V ++ FL F+ I+ L S + F Sbjct: 361 GYIILSACMTFLFVVIGFSIDIANAFVKPESQQAYFLNVIFLMIILFVLYKKRSEIIDFV 420 Query: 117 AEGELS 122 G LS Sbjct: 421 TRGNLS 426 >gi|91176274|ref|YP_537143.1| NADH dehydrogenase subunit 6 [Balaenoptera omurai] gi|90265618|dbj|BAE91838.1| NADH6 [Balaenoptera omurai] gi|90265632|dbj|BAE91851.1| NADH6 [Balaenoptera omurai] Length = 175 Score = 34.6 bits (79), Expect = 7.5, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S V + +P+Y LI G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFVLSIIFVVSFVGVSSKPSPVYGGLGLIVGGGVGCGVVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G++ LIV Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFILGLVVELLIVA 105 >gi|237666227|ref|ZP_04526214.1| putative membrane protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658317|gb|EEP55870.1| putative membrane protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 490 Score = 34.6 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 15/135 (11%) Query: 24 TVRNPIYS--VFSLIFAFVNAAGLFLLL-GAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 + +YS + LI F + +++ L +V + + +Y L + I Sbjct: 21 FTKFVVYSLFILFLIVFFTAFSSVYINLKNINYVNITLIGIY------LILTGGFIYGIR 74 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLY- 139 ++++ + L S FI LA L+ ++ F + + + G+N +G + Sbjct: 75 KKISKKKMFYAILISGFILRLAWALVTKSTPISDFKTIYDSATNLLAGDNSSFVGLGYFA 134 Query: 140 -----TQYAYPLEIS 149 T Y + Sbjct: 135 RFPHMTPYVLLFSLI 149 >gi|59410567|gb|AAW84390.1| NADH dehydrogenase subunit 6 [Vidua codringtoni] gi|59410575|gb|AAW84394.1| NADH dehydrogenase subunit 6 [Vidua codringtoni] Length = 159 Score = 34.6 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 33/55 (60%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVASIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL 73 >gi|29570723|ref|NP_818837.1| NADH dehydrogenase subunit 6 [Cobitis striata] gi|29501050|dbj|BAC67414.1| NADH dehydrogenase subunit 6 [Cobitis striata] Length = 173 Score = 34.6 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L ++ V + P ++ L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LLLMALVVGLVAVASNPAPYFAALGLVVAAGVGCGVLISHGGSFLSLVLFLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIV 107 +F E R LG + ++ L+V Sbjct: 66 -VFAYSAALAAEPFPESWGDRSVLGYVLVYLIGVGLLV 102 >gi|42632283|ref|NP_976111.1| NADH dehydrogenase subunit 6 [Rhinolophus pumilus] gi|16416420|dbj|BAB70629.1| NADH dehydrogenase subunit 6 [Rhinolophus pumilus] Length = 175 Score = 34.6 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTIFVISFVGFSSKPSPIYGGVGLIVSGGVGCGIVMSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V F + M K I+ A ++C N Sbjct: 61 LGGMLVVFGYTTAMATEQYPEVWVSNKVVMGAFISGLIVEAVFVLCVLN 109 >gi|16357077|ref|NP_443409.1|ND6_15821 NADH dehydrogenase subunit 6 [Zenopsis nebulosus] gi|16267208|dbj|BAB70337.1| NADH dehydrogenase subunit 6 [Zenopsis nebulosus] Length = 169 Score = 34.6 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P Y+ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 17 SNPSPYYAALGLVLVSGAGCGVLVAYGGGFLSLVLFLIYLGGMLVVFAYSAAL------A 70 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 AEP + + F ++ ++V ++ + S E S + Sbjct: 71 AEPYPEAWGGWAVFGYVITYAVLVWSAALWMGSGWYEESWVPV 113 >gi|215979775|ref|YP_002333269.1| NADH dehydrogenase subunit 6 [Lagocephalus wheeleri] gi|215422725|dbj|BAG85559.1| NADH dehydrogenase subunit 6 [Lagocephalus wheeleri] Length = 172 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 + VV+ +P + SL+ G+ + G F++++ ++Y+G ++V F + Sbjct: 10 LGLVFGLIAVVSNPSPYFGALSLVVVAGFGCGVLVWHGGSFLSLVLFLIYLGGMLVVFAY 69 >gi|213028652|ref|ZP_03343099.1| NADH dehydrogenase subunit J [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 37 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 22/36 (61%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFV 40 FY+ +AI+++ V+T NP++++ L+ + + Sbjct: 2 EFAFYICGLIAILATLRVITHTNPVHALLYLVISLL 37 >gi|155624532|gb|ABU24611.1| NADH dehydrogenase subunit 6 [Felis silvestris] Length = 175 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K L F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105 >gi|154818566|gb|ABS87756.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] Length = 175 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K L F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105 >gi|228472482|ref|ZP_04057244.1| hypothetical protein CAPGI0001_0749 [Capnocytophaga gingivalis ATCC 33624] gi|228276167|gb|EEK14914.1| hypothetical protein CAPGI0001_0749 [Capnocytophaga gingivalis ATCC 33624] Length = 365 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 6/16 (37%), Positives = 10/16 (62%) Query: 141 QYAYPLEISGFILLLS 156 +Y P +S F+LL + Sbjct: 6 KYFLPFILSSFLLLTA 21 >gi|67005591|gb|AAY62392.1| NADH dehydrogenase subunit 6 [Testudo hermanni] Length = 175 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 46/116 (39%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F LF F + V +P Y VFSL+ G+ + +G FV++I ++Y+G + Sbjct: 4 FVLLFGFCFVFWMAGVSCSSSPYYGVFSLVLGSAFGCGMLVGMGGSFVSLILFLIYMGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +V F + + + G ++ + ++ S + G + Sbjct: 64 LVIFAYSCALAAEPYPASWGTMDMIVYGLCYLISVLWLMLTDCSWWWHMEGFGNST 119 >gi|289183313|ref|YP_003457289.1| NADH dehydrogenase subunit 6 [Gigantactis vanhoeffeni] gi|288909063|dbj|BAI77298.1| NADH dehydrogenase subunit 6 [Gigantactis vanhoeffeni] Length = 173 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 42/113 (37%), Gaps = 11/113 (9%) Query: 24 TVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEV 83 + +P ++ L+ G+ + GA F++++ ++Y+G ++V F + + Sbjct: 21 SNPSPYFAALGLVGVAGAGCGVLVGHGAPFLSLVLFLIYLGGMLVVFAYSAALAAKPYPE 80 Query: 84 AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK 136 + + +A+ ++ + S VE +G+ Sbjct: 81 SLGSRP-----------VASSMVGYLMGVGLISTFFWGGWYQVSWLTVEELGE 122 >gi|126215457|ref|YP_001054865.1| NADH dehydrogenase subunit 6 [Abudefduf vaigiensis] gi|126143590|dbj|BAF47326.1| NADH dehydrogenase subunit 6 [Abudefduf vaigiensis] Length = 173 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++F F I+ V + +P ++ L+ G+ + G F++++ ++Y+G ++V Sbjct: 6 FMFLFGLILGLAAVASNPSPYFAALGLVMVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 F + + AEP + +L L V ++ + + E S + Sbjct: 66 VFAYSAAL------AAEPYPEGWGSWPVLGVMLVYVLGVVLTSGLFWGGWYEGSWVSAD 118 >gi|8714506|gb|AAF78823.1| NADH dehydrogenase subunit 6 [Chelonia mydas] Length = 88 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 39/80 (48%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 +LF F + V +P Y V SL+ GL + +G FV+++ ++Y+G ++V Sbjct: 6 FLFGFCFVFWMVGVSCNPSPYYGVLSLVLGAAFGCGLLVSMGGSFVSVVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRK 88 F + +++ VA + Sbjct: 66 IFAYSSALVEEPYPVAWGNQ 85 >gi|282163947|ref|YP_003356332.1| hypothetical protein MCP_1277 [Methanocella paludicola SANAE] gi|282156261|dbj|BAI61349.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 283 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 10/94 (10%) Query: 104 ELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLE--ISGFILLLSMIGAI 161 L+ A + + E + G EN G + P ++ ILL + G I Sbjct: 113 LLLFPADDLAILKDLNESLPVTADGGTTENQG------WLLPFIVVLATAILLAA--GGI 164 Query: 162 VLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKS 195 L+++ RR IK + + + + PD + V + + Sbjct: 165 YLLMKKRRPIKPEPQQESVPAAPDATPAPVSMDA 198 >gi|154818601|gb|ABS87782.1| NADH dehydrogenase subunit 6 [Felis silvestris silvestris] Length = 175 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY F LI A G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGIGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M A K L F G+LA L C Sbjct: 61 LGGMLVVFGYTTAMATEPYPEAWTSNK-AVLAMFITGVLAELLTAC 105 >gi|148910942|gb|ABR18523.1| NADH dehydrogenase subunit 6 [Takifugu obscurus] Length = 173 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 7 FFYLFSFMAIIS-SFLVVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYV 63 FY F+ + ++V NP Y VF+L+ + G +L G ++++ L++Y+ Sbjct: 1 MFYALVFLLLGMLVVMIVLSTNPAPFYGVFNLVLVALLCCGASVLHGGTSLSLVLLMIYM 60 Query: 64 GAVIVFFLF 72 G ++V F++ Sbjct: 61 GGMLVVFIY 69 >gi|269128819|ref|YP_003302189.1| NADH/Ubiquinone/plastoquinone (complex I) [Thermomonospora curvata DSM 43183] gi|268313777|gb|ACZ00152.1| NADH/Ubiquinone/plastoquinone (complex I) [Thermomonospora curvata DSM 43183] Length = 1040 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 41/116 (35%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + + ++ VR + + L GLF+L GA +A+ LVV +I+ Sbjct: 705 VLGVLVVTAALAATRVRRRLSAALLLSATGYGVVGLFVLHGAPDLALTALVVETLTLIIL 764 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLV 125 + + + P R + GI A + + +A R + Sbjct: 765 VFVLRRLPEWFPPSRRPLGLRAASTAVSAGIGAFAALFLLVAVLSRTARPVGPRYI 820 >gi|157736129|ref|YP_001491485.1| NADH dehydrogenase subunit 6 [Heniochus diphreutes] gi|157679342|dbj|BAF80400.1| NADH dehydrogenase subunit 6 [Heniochus diphreutes] Length = 173 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 F ++ V + +P ++ L+ G+ + G F+++I +VY+G ++V Sbjct: 7 FFLIGLVLGLIAVASNPSPFFAALGLVVVAGFGCGILIGHGGSFLSLILFLVYLGGMLVV 66 Query: 70 FLF 72 F + Sbjct: 67 FAY 69 >gi|29569526|gb|AAO85231.1| NADH dehydrogenase subunit 6 [Buteo regalis] Length = 172 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ V G + L FVA++ +VY+G Sbjct: 2 AYFVLLLGMGFVLGGLAVASNPSPYYGVVGLVLGSVVGCGWLVSLEVPFVALVLFMVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F++ + + + Sbjct: 62 GMLVVFVYSVCLAADPFPETWGDWR 86 >gi|23194448|gb|AAN15180.1| NADH dehydrogenase subunit 6 [Paragonimus westermani] Length = 150 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F F ++I V +Y + L A + L+ +LG + ++ +VYVG Sbjct: 3 VVFLSLYFSSLIGFSFV--SHPVVYCILLLTGALGISGYLYTVLGLSWYLVLFCLVYVGG 60 Query: 66 VIVFFLFI 73 + V F+F+ Sbjct: 61 IYVLFIFV 68 >gi|5835357|ref|NP_007392.1|ND6_12144 NADH dehydrogenase subunit 6 [Equus asinus] gi|3122561|sp|P92486|NU6M_EQUAS RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1805758|emb|CAA66025.1| NADH dehydrogenase subunit 6 [Equus asinus] Length = 175 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +I + +PIY LI + G+ + G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVIFVIGFVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M +G F +G+L ++V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNATVMGVFLLGLLMEVMLVL 105 >gi|331746991|ref|YP_004425135.1| NADH dehydrogenase subunit 6 [Rhinopithecus bieti] gi|297340664|gb|ADI32830.1| NADH dehydrogenase subunit 6 [Rhinopithecus bieti] Length = 174 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 2/107 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L S + I+ + +PIY +L+ + V + L G ++ ++ ++Y Sbjct: 1 MSYILF-LLSVLLIMGFVGFSSKPSPIYGGLALVVSGVIGCIIILNYGGTYMGLMMFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + + I+ LGS IG++ ++ Sbjct: 60 LGGMMVVFGYT-TAMAIEEYPEAWVSGFEVLGSLLIGLMMEVGLILW 105 >gi|325679765|ref|ZP_08159339.1| conserved domain protein [Ruminococcus albus 8] gi|324108580|gb|EGC02822.1| conserved domain protein [Ruminococcus albus 8] Length = 371 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 54 VAMITLVVYVGAVIVFF--LFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 A+ ++++VGA+ V +F+I+++ + + + GF + + +L LI + Sbjct: 55 FALGEVLMFVGALAVVLCPIFLILLIFLHKKAKYRKFCAGFHKTVLMTLLCVVLIYMPTW 114 Query: 112 FMVFSAEGELSRLVFKGNNV--ENIGKVL 138 ++ FS V + +N + +G +L Sbjct: 115 YIPFSGTLLGEGTVARRDNFDNDQVGTLL 143 >gi|322422673|ref|YP_004222238.1| NADH dehydrogenase subunit 6 [Petrocephalus microphthalmus] gi|317176465|dbj|BAJ54283.1| NADH dehydrogenase subunit 6 [Petrocephalus microphthalmus] Length = 172 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F ++ V + P ++ L+ + G+ ++ G F+++I ++Y+G ++V Sbjct: 7 MFLIGLVLGLVAVASNPAPYFAALGLVLSAALGCGVLVMCGGSFLSLILFLIYLGGMLVV 66 Query: 70 FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + E ++ + +G+L + Sbjct: 67 FAYSAALAAEPHPEAWGDWSVLSYVVVYILGVLVVGGWALGGWY 110 >gi|205374697|ref|ZP_03227491.1| monovalent cation/H+ antiporter subunit A [Bacillus coahuilensis m4-4] Length = 798 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 41/101 (40%), Gaps = 3/101 (2%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + + ++ + ++ ++ + ++ +L + A F+L A +A+ L++ +V Sbjct: 631 VLAVILVLGTVTILFAKSRLTAIIALGSVGYSVALFFVLFKAPDLALTQLLIETVSVA-- 688 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 LF++ + + G+ I L+ S Sbjct: 689 -LFLLCFYHLPRLSRHEERTSFKFGNLLISAAVGVLVTLIS 728 >gi|119360733|ref|YP_913716.1| NADH dehydrogenase subunit 6 [Leptobotia mantschurica] gi|119225441|dbj|BAF41790.1| NADH dehydrogenase subunit 6 [Leptobotia mantschurica] Length = 173 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 2/110 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L I+ V + P ++ L+ A G+ + G F++++ ++Y+G ++V Sbjct: 7 LLLIALIVGLVAVASNPAPYFAALGLVVAAGVGCGVLIGHGGSFLSLVLFLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEG 119 +F E R +G + +L L+V + Sbjct: 66 -VFAYSAALAAEPFPEAWGDRSVVGYVLVYLLGVGLMVGLFWENWYEGSW 114 >gi|108767322|ref|YP_636172.1| NADH dehydrogenase subunit 6 [Campostoma anomalum] gi|105873539|gb|ABF74772.1| NADH dehydrogenase subunit 6 [Campostoma anomalum] Length = 173 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L I+ V + P ++ L+ A G+ L G F++++ ++Y+G Sbjct: 2 TYFVSLLLMALIVGLIAVASNPTPYFAALGLVVAAGVGCGVLLGSGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEP-RKKRGFLGSFFIGILAAELIVCASNF 112 ++V F + + A R G++ + +G+L A + + Sbjct: 62 GMLVVFAYSAALAAEPFPEAWGSRSVMGYVFVYLVGVLVAGGLFWGGWY 110 >gi|28894764|ref|NP_795844.1| NADH dehydrogenase subunit 6 [Salangichthys microdon] gi|28804966|dbj|BAC58249.1| NADH dehydrogenase subunit 6 [Salangichthys microdon] Length = 173 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + P ++ L+ A G+ + G F+++I ++Y+G ++V Sbjct: 7 LFLIGLVLGLVAVASNPAPYFAALGLVMAAGAGCGVLVGHGGSFLSLILFLIYLGGMLVV 66 Query: 70 FLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE 104 F + + + E R G++ +F+ + A Sbjct: 67 FAYSAALAAEPYPETWGDRSVLGYVAGYFLAVSAMA 102 >gi|317507735|ref|ZP_07965440.1| NADH-Ubiquinone/plastoquinone [Segniliparus rugosus ATCC BAA-974] gi|316253988|gb|EFV13353.1| NADH-Ubiquinone/plastoquinone [Segniliparus rugosus ATCC BAA-974] Length = 954 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 + + + II + V + + + +V + L+ + GA +A+ +V + Sbjct: 599 VVAVVIIIGAVAAVVLTHRMGAVLASGVTGYGCGMLYAMHGAPDLALTQFLV---ETLTL 655 Query: 70 FLFIIMMLDIDIEVAEPR-KKRGFLGSFFIGILAAELIVCASNFMVFSAEGEL 121 +F +++ D EP F+ + F + A L V A + G Sbjct: 656 VVFTLVLRKFDAHTNEPIPALSHFVRTVFSLGVGAGLSVLALYAISARPTGAP 708 >gi|238800155|gb|ACR55945.1| NADH dehydrogenase subunit 6 [Anilius scytale] Length = 174 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 52/110 (47%), Gaps = 1/110 (0%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M + + F++ + + ++ T P + V +L+ + + +++G F+A++ LV Sbjct: 1 MTLFNFLFFVGLVLILAGVLVLNTTTVPYFGVVALMSVVALCSFVMVVMGRMFMALVVLV 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 VY+G +++ F + + ++ D+E + F+ ++ A + Sbjct: 61 VYLGGMMIIFGYCVS-VEKDLESGYWSIGFKVVSYLFVFVVVAICLWSIM 109 >gi|219524159|ref|YP_002456307.1| NADH dehydrogenase subunit 6 [Francolinus pintadeanus] gi|157678157|gb|ABV60476.1| NADH dehydrogenase subunit 6 [Francolinus pintadeanus] Length = 173 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F ++ V + +P Y V L+ A V G + LG FV++ +VY+G Sbjct: 2 TYFVIFLGVCFMLGVLAVASNPSPYYGVVGLVVASVVGCGWLVNLGVSFVSLALFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 ++V F++ + + A + LG +L + V F+ F Sbjct: 62 GMLVVFVYSVSLAADPYPEAWGSWR--VLGYGVGFVLVICVGVVLGGFVDF 110 >gi|157736115|ref|YP_001491472.1| NADH dehydrogenase subunit 6 [Chaetodon auripes] gi|157679328|dbj|BAF80387.1| NADH dehydrogenase subunit 6 [Chaetodon auripes] Length = 172 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 3/104 (2%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 + F+LF + V +P ++ F L+ + G G F+++I ++Y+G Sbjct: 5 VVFFLFGL--VFGLVGVAANPSPFFAAFGLVVVAIFGCGALAQEGGVFLSLILFLIYLGG 62 Query: 66 VIVFFLF-IIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 ++V F + + D E G++ + ++ A + Sbjct: 63 MLVVFAYSAALAADPHPESLGDSSVMGYMAFYLAVVVVASGLFW 106 >gi|156741749|ref|YP_001431878.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941] gi|156233077|gb|ABU57860.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941] Length = 792 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 + + I ++ V+ + + +V L F A +FLL +A+ V V + F+ Sbjct: 606 ALIIIAATTFVIRATSRMAAVVGLGFVGYGTALVFLLFSGPDLAITQFAVET-LVAILFV 664 Query: 72 FIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNV 131 ++ L ++ + G G A + V + E +S + + + Sbjct: 665 LVVYRLPRFSNLSTAGARVRSAGLAIAG--GALMTVLTLMALASPTESRVSGFLAENSVP 722 Query: 132 ENIGK 136 + G+ Sbjct: 723 QAFGR 727 >gi|326535977|ref|YP_004300418.1| NADH dehydrogenase subunit 6 [Galaxias gollumoides] gi|14039387|gb|AAK53206.1| NADH dehydrogenase subunit 6 [Galaxias gollumoides] gi|311788407|gb|ADQ12796.1| NADH dehydrogenase subunit 6 [Galaxias gollumoides] Length = 173 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + P ++ L+ A G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78 Query: 82 EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 + R G++ ++F+G+L + + Sbjct: 79 PESWGDRSVLGYVLAYFVGVLVIAGLFWGGWY 110 >gi|59939176|gb|AAX12371.1| polyprotein [Pronghorn antelope pestivirus] Length = 1653 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Query: 77 LDIDIEVAEPRKKRGFLGSFFIGILAA-ELIVCASNFMVFSAEGELSRLVFKGNNVENIG 135 D++ + FL + +L ++ +M + + + LV G+ V IG Sbjct: 1012 FDLEADDHHKNWFNEFLVVVVVALLGGRYILWLIIIYMTLTYYPDDAALVNTGDTV-AIG 1070 Query: 136 KVLYTQYAYPLEISGFILLL 155 +L++ E+ + LL+ Sbjct: 1071 NILFSNN---FEVVSYFLLI 1087 >gi|315604982|ref|ZP_07880036.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313261|gb|EFU61324.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 1140 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 35/175 (20%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 + L+ +V N + + L+ AFV+ + + V ++++ + I + Sbjct: 993 VMGSLMSSVTNIVNIISWLLIAFVSISLI-----------------VSSIMIAIITYISV 1035 Query: 77 LDIDIEV--------AEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 L+ E+ ++ R F I L A LI + + + + + F+ Sbjct: 1036 LERRKEIGILRSIGASKGDVSRVFNAETVIEGLLAGLIGVGVTYGLCAIANAVVKASFEV 1095 Query: 129 NNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESN 183 N+ + + T +L + I I+ R RQD + L S Sbjct: 1096 ENIAQLSAL--TAAIL--IAVSVLLTV--IAGIIPAAR----ASRQDPVEALRSE 1140 >gi|238924319|ref|YP_002937835.1| DNA translocase FtsK [Eubacterium rectale ATCC 33656] gi|238875994|gb|ACR75701.1| DNA translocase FtsK [Eubacterium rectale ATCC 33656] Length = 943 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 15/107 (14%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+F + ++ SF V+ + Y++ L+ V F+ I + +Y + V Sbjct: 71 YIFPLVLLVGSFFAVSNKGNSYAIMKLVMTIV------------FIWFICVFMY---LAV 115 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 + F + + I+ E GF+G+ IL + + + + Sbjct: 116 YGEFAVSPVQSYIDSVERHSGGGFIGALIGCILVPAVGIIGAYVVTI 162 >gi|195934722|ref|YP_002120657.1| NADH dehydrogenase subunit 6 [Meles meles] gi|155368609|emb|CAM98622.1| NADH dehydrogenase subunit 6 [Meles meles] Length = 177 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + ++S + +PIY +LI + G+ L G F+ ++ ++Y Sbjct: 1 MMTYIVFILSVVFVVSFVGFSSKPSPIYGGLALIISGAVGCGIVLSFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G+L+ L+ C Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKAVLGAFVVGLLSELLMAC 105 >gi|147742962|ref|YP_001218778.1| NADH dehydrogenase subunit 6 [Echinococcus vogeli] gi|145207872|dbj|BAF56532.1| NADH dehydrogenase subunit 6 [Echinococcus vogeli] Length = 151 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 5/118 (4%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+++ F + + T + V +I A + + +++ G + +++ + Sbjct: 1 MLLEIFVVMYFCVLMVFC----YTSHCVYHCVLLVINALLASCICYVVYGFSWYSLLFCL 56 Query: 61 VYVGAVIVFFLFI-IMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 VYVG V V F+F+ + + + + + G L +L I + FS Sbjct: 57 VYVGGVYVLFIFVSVFSPNSNFVLYSGSLEIGALVCGGFWLLVCGFIFYSLVGGEFSG 114 >gi|29570765|ref|NP_818928.1| NADH dehydrogenase subunit 6 [Gonorynchus greyi] gi|29501176|dbj|BAC67531.1| NADH dehydrogenase subunit 6 [Gonorynchus greyi] Length = 174 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 39/115 (33%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + + ++ V + P Y+ L+ A G+ G F+ ++ ++Y Sbjct: 1 MITYLMCVLLCGVVVGLIAVASNPAPYYAALGLVLASGVGCGVLAGHGGTFLCLVLFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + K L + + A + + S Sbjct: 61 LGGMLVVFAYSAALAAEPFPETWGDKSVMSLVVVYSSGVLAGGVWSWETWYGGSW 115 >gi|16357148|ref|NP_443253.1| NADH dehydrogenase subunit 6 [Harpadon microchir] gi|16266845|dbj|BAB70038.1| NADH dehydrogenase subunit 6 [Harpadon microchir] Length = 173 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 46/111 (41%), Gaps = 1/111 (0%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + LF F +I V + P ++ L+ + G+ L G F++++ +VY+G Sbjct: 2 AYLMSLFLFGFVIGMVGVASNPAPYFAALGLVLSAGFGCGVMLSCGGSFLSLVLFLVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAE-PRKKRGFLGSFFIGILAAELIVCASNFMV 114 ++V F + + + R G++ + G++ + + + Sbjct: 62 GMLVVFAYSAALAAEPYPTSWGDRSVVGYVVVYLSGVVLVGVSFMGGWYDI 112 >gi|327492595|ref|YP_004347494.1| NADH dehydrogenase subunit 6 [Polyspina piosae] gi|327392292|dbj|BAK09741.1| NADH dehydrogenase subunit 6 [Polyspina piosae] Length = 173 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 22 VVTVRNP--IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 +V NP Y VF+L+ + G +L G F++++ L++Y+G ++V F++ Sbjct: 17 IVLSTNPAPFYGVFNLVLVALFCCGASVLHGGTFLSLVLLMIYMGGMLVVFIY 69 >gi|14602397|ref|NP_148775.1| NADH dehydrogenase subunit 6 [Trachurus japonicus] gi|58372109|ref|YP_194935.1| NADH dehydrogenase subunit 6 [Trachurus trachurus] gi|14588631|dbj|BAB61822.1| NADH dehydrogenase subunit 6 [Trachurus japonicus] gi|14588645|dbj|BAB61835.1| NADH dehydrogenase subunit 6 [Trachurus japonicus] gi|38603506|dbj|BAD02889.1| NADH dehydrogenase subunit 6 [Trachurus trachurus] Length = 173 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + YL F + V + +P ++ L+ G+ + G F++++ ++Y+G Sbjct: 2 TFIMYLVLFSFVFGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLG 61 Query: 65 AVIVFFLF 72 ++V F + Sbjct: 62 GMLVVFAY 69 >gi|326513180|dbj|BAK06830.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 353 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Query: 149 SGFILLL--SMIGAIVLMLRHRRDIK 172 G +LL+ +++GA VL R R D K Sbjct: 43 VGALLLVGGAIVGAAVLAWRRRGDGK 68 >gi|326489239|dbj|BAK01603.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 325 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Query: 149 SGFILLL--SMIGAIVLMLRHRRDIK 172 G +LL+ +++GA VL R R D K Sbjct: 15 VGALLLVGGAIVGAAVLAWRRRGDGK 40 >gi|291529410|emb|CBK94996.1| DNA translocase FtsK [Eubacterium rectale M104/1] Length = 943 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 15/107 (14%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+F + ++ SF V+ + Y++ L+ V F+ I + +Y + V Sbjct: 71 YIFPLVLLVGSFFAVSNKGNSYAIMKLVMTIV------------FIWFICVFMY---LAV 115 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 + F + + I+ E GF+G+ IL + + + + Sbjct: 116 YGEFAVSPVQSYIDSVERHSGGGFIGALIGCILVPAVGIIGAYVVTI 162 >gi|332886956|dbj|BAK23067.1| NADH dehydrogenase subunit 6 [Horadandia atukorali] Length = 173 Score = 34.6 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 2/120 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 L + I V + P ++ L+ G+ + G F+++I ++Y+G ++V Sbjct: 7 LLLVVLITGLVAVASNPTPYFAAIGLVVTAGVGCGVLVYCGGTFLSLILFLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 +F E R + I +L L+ + +S + + + Sbjct: 66 -VFAYSAALAAEPFPEAWGGRSVVEYVLIYLLGVGLVAGFFWGSWYEGYWVVSDSLKEFS 124 >gi|260831914|ref|XP_002610903.1| hypothetical protein BRAFLDRAFT_126287 [Branchiostoma floridae] gi|229296272|gb|EEN66913.1| hypothetical protein BRAFLDRAFT_126287 [Branchiostoma floridae] Length = 1366 Score = 34.6 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 10/124 (8%) Query: 13 FMAIISSFLVVTVRNPIYSV----FSLIFAFVNAAGLFLLLGAEFVAMITLVVY------ 62 I LV+ + P V F LI + L+ L VY Sbjct: 397 LYVIAPGLLVLLYKKPKLGVGLVTFFLILSMFLTGILYHLFVNVPSGSYYATVYKFTFTR 456 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G +V L ++ D +V + + + G A ++ + + + Sbjct: 457 MGPYMVGLLMGYILFTTDRKVPNTGSTKALMLLGWFGATAVAVLFVGAPGWIGTPFSIWG 516 Query: 123 RLVF 126 + + Sbjct: 517 QPAW 520 >gi|84579669|dbj|BAE72249.1| NADH dehydrogenase subunit 6 [Oryzias latipes] Length = 173 Score = 34.6 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 42/109 (38%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ V + +P ++ L+ + G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L ++ ++ + + + S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVVCVSVFFSGGWFEGSW 114 >gi|90418819|ref|ZP_01226730.1| putative NADH, ubiquinone oxidoreductase [Aurantimonas manganoxydans SI85-9A1] gi|90336899|gb|EAS50604.1| putative NADH, ubiquinone oxidoreductase [Aurantimonas manganoxydans SI85-9A1] Length = 785 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ + + F VV +N + ++ SL A +F+L+GA ++ +V +V++ Sbjct: 608 WIVLALLLCGLFAVVVAKNRLTAIVSLGIQGFAVALIFMLMGAPDLSFTQFMVETLSVVI 667 Query: 69 FFL 71 L Sbjct: 668 LAL 670 >gi|38707518|ref|NP_944618.1| NADH dehydrogenase subunit 6 [Balaena mysticetus] gi|38602429|emb|CAD87895.1| NADH6 protein [Balaena mysticetus] gi|62086662|dbj|BAD91757.1| NADH dehydrogenase subunit 6 [Balaena mysticetus] Length = 175 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + ++ S + +IS V + +PIY LI G+ L G F+ ++ +VY Sbjct: 1 MMTYIVFILSIIFVISFVGVSSKPSPIYGGLGLIVGGGAGCGVVLNFGGSFLGLMVFLVY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVC 108 +G ++V F + M + LG+F +G++ L+V Sbjct: 61 LGGMLVVFGYTTAMATEQYPEV-WVSNKVVLGAFVLGLMVEFLVVV 105 >gi|322422715|ref|YP_004222427.1| NADH dehydrogenase subunit 6 [Micromesistius poutassou] gi|317423518|emb|CBY85666.1| NADH dehydrogenase 6 [Micromesistius poutassou] Length = 173 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 15 AIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 ++ V + +P ++ L+ + + G F++++ ++Y+G ++V F + Sbjct: 12 MVLGVISVASNPSPYFAALGLVLVAGVGCVILMGHGGSFLSLVLFLIYLGGMLVVFAYCA 71 Query: 75 MMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFK 127 + AEP + S +L L+V + + E + Sbjct: 72 AL------AAEPYPEAWGEWSVLGSVLGYLLLVVGAGSWFWEGWYEAMWVPVD 118 >gi|317097340|ref|YP_004123542.1| NADH dehydrogenase subunit 6 [Microphysogobio koreensis] gi|223951296|gb|ACN29588.1| NADH dehydrogenase subunit 6 [Microphysogobio koreensis] Length = 173 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 1/115 (0%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFMLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGILVGSGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +G ++V F + + A + ++ + V + S Sbjct: 60 LGGMLVVFAYSAALAAEPFPEAWGSRSVAGYVLVYLLGVVLMAGVFWGGWYEGSW 114 >gi|291525101|emb|CBK90688.1| DNA translocase FtsK [Eubacterium rectale DSM 17629] Length = 943 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 15/107 (14%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 Y+F + ++ SF V+ + Y++ L+ V F+ I + +Y + V Sbjct: 71 YIFPLVLLVGSFFAVSNKGNSYAIMKLVMTIV------------FIWFICVFMY---LAV 115 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVF 115 + F + + I+ E GF+G+ IL + + + + Sbjct: 116 YGEFAVSPVQSYIDSVERHSGGGFIGALIGCILVPAVGIIGAYVVTI 162 >gi|289183216|ref|YP_003457199.1| NADH dehydrogenase subunit 6 [Astrospartus mediterraneus] gi|288995559|emb|CBH40160.1| NADH dehydrogenase subunit 6 [Astrospartus mediterraneus] Length = 159 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 9/141 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF F I S +V+ +P YSV ++ + G F +I L+VYVG ++V Sbjct: 4 LFIFAIISGSVIVLWSSSPYYSVLGVLLQSLGYCFFLCFFGFPFFGLIFLLVYVGGMMVV 63 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAE--LIVCASNFMVFSAEGELSRLVFK 127 FLF ++ + + FL SF I IL L F S E+ Sbjct: 64 FLFSTVLSAERYLNSSILEVLFFLFSFNIIILPYLEFLFPWIYGFSFLSLSKEIQVC--- 120 Query: 128 GNNVENIGKVLYTQYAYPLEI 148 E +G +++ + Sbjct: 121 ----ELMGSLMFLTCLVAFIL 137 >gi|215979579|ref|YP_002333087.1| NADH dehydrogenase subunit 6 [Chelonodon patoca] gi|215422767|dbj|BAG85598.1| NADH dehydrogenase subunit 6 [Chelonodon patoca] Length = 173 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 37/97 (38%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P + SL+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPSPYFGALSLVVVAAFGCGVLIWHGGAFLSLVLFLIYLGGMLVVFAYSAALAAEPY 78 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 ++GI+ ++ ++ Sbjct: 79 PETLGSWSVLVWMLTYLGIVVLVYVILLGWGDEYTWP 115 >gi|198447341|ref|YP_002221352.1| NADH dehydrogenase subunit 6 [Rhodeus ocellatus] gi|63081763|gb|AAY30630.1| NADH dehydrogenase subunit 6 [Rhodeus ocellatus] Length = 173 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 7/122 (5%) Query: 8 FYLFSFMAIISSFLVVTVR-NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F L +A+I + V P ++ L+ A G+ + G F++++ ++Y+G + Sbjct: 4 FMLLMMVALILGLIAVASNPTPYFAALGLVVAAGVGCGILIGSGGPFLSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 +V F + + AEP + S + +L V E S +V Sbjct: 64 LVVFAYSAAL------AAEPFPEAWGSRSVLLYVLVYSTGVLLVGGSFLGGWYEGSWVVV 117 Query: 127 KG 128 G Sbjct: 118 DG 119 >gi|118196934|emb|CAL37032.1| NADH dehydrogenase subunit 6 [Ramphotyphlops australis] Length = 175 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 49/113 (43%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 F +L +I + + + P + V +I + V + GL G+ FV+++ +VY+G Sbjct: 2 EFFIFLLCLCIVIGLYGLCSSVVPYFGVVCVIISSVFSCGLIAAFGSAFVSLLLFIVYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 ++V F + + M + + + G+L +++ V S+ Sbjct: 62 GMMVVFAYSVAMTEGFEFADMKGRIFVWESMVLSGVLGVVIMLSLWVSGVGSS 114 >gi|51038595|ref|YP_063371.1| NADH dehydrogenase subunit 6 [Pelodiscus sinensis] gi|50402837|gb|AAT76646.1| NADH dehydrogenase subunit 6 [Pelodiscus sinensis] Length = 174 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 46/109 (42%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 F +LF + V + +P Y V L+F V + + +G F++++ ++Y+G Sbjct: 3 FFMFLFEVCFVFWIISVASGPSPYYGVVGLVFGAVFGCLMLVGVGGSFISLVLFLIYLGG 62 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 ++V F + + + A F ++ + ++ C + + Sbjct: 63 MLVVFAYSVALTGDPYPSAWRGYGDLFCMVGYVLFVVGAVMYCFDKWSL 111 >gi|16357302|ref|NP_443396.1|ND6_15820 NADH dehydrogenase subunit 6 [Poromitra oscitans] gi|16267103|dbj|BAB70246.1| NADH dehydrogenase subunit 6 [Poromitra oscitans] Length = 173 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 35/98 (35%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ G+ +G F++++ ++Y+G ++V F + + Sbjct: 17 IAVASNPSPYFAALGLVLVSGIGCGILFGMGGPFLSLVLFLIYLGGMLVVFAYSAALAAE 76 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + GI+ + S Sbjct: 77 AYPESWGSWSVMGYVLAYCGIVLLFSGYFWGGWYEVSW 114 >gi|223007706|gb|ACM69958.1| NADH dehydrogenase subunit 6 [Homo sapiens] Length = 174 Score = 34.2 bits (78), Expect = 8.7, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 39/103 (37%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +L S ++ + +PIY LI + V + L G ++ ++ ++Y+G + Sbjct: 4 ALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +V F + M + A + + L++ Sbjct: 64 MVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWV 106 >gi|300780412|ref|ZP_07090268.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A [Corynebacterium genitalium ATCC 33030] gi|300534522|gb|EFK55581.1| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit A [Corynebacterium genitalium ATCC 33030] Length = 1016 Score = 34.2 bits (78), Expect = 8.7, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 + + +I + RN + V + A +F L GA +A+ ++V V+V F+ Sbjct: 619 AIILMICAVAATRARNRLSIVILVGMTGYALAFMFALHGAPDLALTQVLVET-IVMVVFM 677 Query: 72 FIIMMLDIDIEVAEPRKKR 90 ++ L D++V + R Sbjct: 678 LVLRKLPTDVDVRKDLDNR 696 >gi|34106440|gb|AAQ62221.1| NADH dehydrogenase subunit 6 [Vidua purpurascens] gi|34106464|gb|AAQ62233.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106470|gb|AAQ62236.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106472|gb|AAQ62237.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106476|gb|AAQ62239.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106478|gb|AAQ62240.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106480|gb|AAQ62241.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106482|gb|AAQ62242.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106486|gb|AAQ62244.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106492|gb|AAQ62247.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106494|gb|AAQ62248.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106498|gb|AAQ62250.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106500|gb|AAQ62251.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106502|gb|AAQ62252.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106504|gb|AAQ62253.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106506|gb|AAQ62254.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106508|gb|AAQ62255.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106510|gb|AAQ62256.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106512|gb|AAQ62257.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106514|gb|AAQ62258.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106516|gb|AAQ62259.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106520|gb|AAQ62261.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106522|gb|AAQ62262.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106524|gb|AAQ62263.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|34106554|gb|AAQ62278.1| NADH dehydrogenase subunit 6 [Vidua larvaticola] gi|34106558|gb|AAQ62280.1| NADH dehydrogenase subunit 6 [Vidua larvaticola] gi|34106584|gb|AAQ62293.1| NADH dehydrogenase subunit 6 [Vidua maryae] gi|34106586|gb|AAQ62294.1| NADH dehydrogenase subunit 6 [Vidua maryae] gi|34106634|gb|AAQ62318.1| NADH dehydrogenase subunit 6 [Vidua raricola] gi|34106638|gb|AAQ62320.1| NADH dehydrogenase subunit 6 [Vidua raricola] gi|34106672|gb|AAQ62337.1| NADH dehydrogenase subunit 6 [Vidua wilsoni] gi|34106674|gb|AAQ62338.1| NADH dehydrogenase subunit 6 [Vidua wilsoni] gi|59410417|gb|AAW84315.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|59410421|gb|AAW84317.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|59410429|gb|AAW84321.1| NADH dehydrogenase subunit 6 [Vidua camerunensis] gi|59410633|gb|AAW84422.1| NADH dehydrogenase subunit 6 [Vidua larvaticola] gi|59410657|gb|AAW84434.1| NADH dehydrogenase subunit 6 [Vidua maryae] gi|59410747|gb|AAW84479.1| NADH dehydrogenase subunit 6 [Vidua raricola] gi|59410759|gb|AAW84485.1| NADH dehydrogenase subunit 6 [Vidua raricola] gi|59410761|gb|AAW84486.1| NADH dehydrogenase subunit 6 [Vidua raricola] gi|59410763|gb|AAW84487.1| NADH dehydrogenase subunit 6 [Vidua wilsoni] Length = 159 Score = 34.2 bits (78), Expect = 8.7, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 33/55 (60%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL 73 >gi|223468821|gb|ACM89975.1| NADH dehydrogenase subunit 6 [Accipiter gentilis] Length = 172 Score = 34.2 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 + F L ++ V + +P Y V L+ G + LG FVA++ + Y+G Sbjct: 2 AYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSAMGCGWVVSLGVPFVALVLFMGYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKK 89 ++V F+ + M + + Sbjct: 62 GMLVVFVSSVCMAADPFPESWGDWR 86 >gi|218681048|ref|ZP_03528945.1| putative monovalent cation/H+ antiporter subunit A [Rhizobium etli CIAT 894] Length = 419 Score = 34.2 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 1/121 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 + +A V+ R+ + ++ SL A +FLL GA +A +V +V++ Sbjct: 293 WAVLLIAAFGLAAVLVARDRLTAIVSLGIQGFAVAIIFLLFGAPDLAFTQFMVETLSVVI 352 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKG 128 L ++ L + P R F G+ + +A V + F L + Sbjct: 353 LAL-VMTRLLLSPGDRRPLAHRLFDGALALAWIAHGANVVNVIIVDFRGTDTLGEIASSR 411 Query: 129 N 129 + Sbjct: 412 S 412 >gi|89257244|ref|YP_514695.1| NADH dehydrogenase subunit 6 [Ranzania laevis] gi|86604658|dbj|BAE79241.1| NADH dehydrogenase subunit 6 [Ranzania laevis] Length = 173 Score = 34.2 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 40/96 (41%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVVVAGLGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPY 78 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + L + I+AA + + FS Sbjct: 79 PESWGSRPVVMLMLVYTVIVAAVSGMFWGGWYEFSW 114 >gi|84579585|dbj|BAE72171.1| NADH dehydrogenase subunit 6 [Oryzias latipes] gi|84579613|dbj|BAE72197.1| NADH dehydrogenase subunit 6 [Oryzias latipes] gi|84579627|dbj|BAE72210.1| NADH dehydrogenase subunit 6 [Oryzias latipes] gi|253960433|dbj|BAH84917.1| NADH dehydrogenase subunit 6 [Oryzias latipes] Length = 173 Score = 34.2 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 42/109 (38%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ V + +P ++ L+ + G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L ++ ++ + + + S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVMWASVFFSGGWFEGSW 114 >gi|331746977|ref|YP_004425122.1| NADH dehydrogenase subunit 6 [Rhinopithecus avunculus] gi|297340650|gb|ADI32817.1| NADH dehydrogenase subunit 6 [Rhinopithecus avunculus] gi|325652637|gb|ADZ37136.1| NADH dehydrogenase subunit 6 [Rhinopithecus avunculus] Length = 174 Score = 34.2 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 2/107 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L S + I+ + +PIY +L+ + V + L G ++ ++ ++Y Sbjct: 1 MSYILF-LLSVLLIMGFVGFSSKPSPIYGGLALVISGVIGCIIILNYGGTYMGLMMFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCA 109 +G ++V F + + I+ LGS IG++ ++ Sbjct: 60 LGGMMVVFGYT-TAMAIEEYPEAWVSGFEVLGSLLIGLMMEVGLILW 105 >gi|291002171|gb|ADD71176.1| NADH dehydrogenase subunit 6 [Oreochromis niloticus] Length = 173 Score = 34.2 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++F F ++ V + +P ++ L+ G+ + G F++++ ++Y+G ++V Sbjct: 6 FMFLFGLVLGLAAVASNPSPYFAALGLVAVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNF 112 F + + G + ++ +G+ AA + + Sbjct: 66 VFAYSAALAAEPYPEGWGSWPVLGVMVAYLVGVCAAAGLFWGGWY 110 >gi|121709548|ref|XP_001272451.1| hypothetical protein ACLA_066610 [Aspergillus clavatus NRRL 1] gi|119400600|gb|EAW11025.1| hypothetical protein ACLA_066610 [Aspergillus clavatus NRRL 1] Length = 304 Score = 34.2 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 9/102 (8%) Query: 9 YLFSFMAIISSFLVV--TVRNPIYSVFS--LIFAFVNAAGLFLLLG-AEFVAMITLVVYV 63 +LF MA++ ++ T N +Y V LI FV +G + LG A+ A +VV Sbjct: 187 FLFISMAVLMVIFMICATRTNVVYVVIFATLIIVFVLLSGAYWRLGVADATAGNRMVVGA 246 Query: 64 GAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 GA LF+ +L + +A+ GF +G L + Sbjct: 247 GAA----LFLASLLGFYLLIAQLFDSVGFPVRLPVGDLTSLW 284 >gi|49616800|ref|YP_044776.1| NADH dehydrogenase subunit 6 [Smaug warreni] gi|49256956|dbj|BAD24761.1| NADH dehydrogenase subunit 6 [Smaug warreni] Length = 172 Score = 34.2 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 38/103 (36%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 I+ V + P Y V L+++ + + +L G F++++ ++Y+G ++V Sbjct: 7 FLGLCFIVGVVSVASNPAPYYGVVGLVWSALVGCCVLVLSGVSFLSLVLFMIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + +G++ F Sbjct: 67 FAYSVALASEPYPETWGNFGVMVHFLGGMGLVFVLAWWYLEGF 109 >gi|39972333|ref|XP_367557.1| hypothetical protein MGG_07468 [Magnaporthe oryzae 70-15] gi|145016655|gb|EDK01085.1| hypothetical protein MGG_07468 [Magnaporthe oryzae 70-15] Length = 1210 Score = 34.2 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Query: 151 FILLLSMIGAI---VLMLRHRRDIKRQDI--SKQLESNP-DNSIVMVKV 193 ILL++ I I L R RR+ ++QD + +P DN+ +V V Sbjct: 11 LILLVAAIITILRSTLTNRGRRNAQKQDPDSPNAMMVDPIDNATHVVDV 59 >gi|46237744|ref|YP_005969.1| NADH dehydrogenase subunit 6 [Mola mola] gi|46092366|dbj|BAD14273.1| NADH dehydrogenase subunit 6 [Mola mola] Length = 173 Score = 34.2 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 38/96 (39%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVVVAGLGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPY 78 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 + + L + I+ + + FS Sbjct: 79 PESWGSRPVVVLMLVYTAIVVLVSGMFWGGWYEFSW 114 >gi|280978208|ref|YP_003345150.1| NADH dehydrogenase subunit 6 [Monognathus jesperseni] gi|271280704|dbj|BAI53521.1| NADH dehydrogenase subunit 6 [Monognathus jesperseni] Length = 173 Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 V + +P Y+ F L+ A L + G F++++ ++Y+G ++V F + Sbjct: 14 GGFIGVASNPSPYYAAFGLVVAAGAGCILLMFTGGTFISLVLFLIYLGGMLVVFAY 69 >gi|32709245|gb|AAP86861.1| NADH dehydrogenase subunit 6 [Hypoplectrus nigricans] Length = 173 Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 2/120 (1%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +F ++ V + +P ++ L+ G+ G F++++ ++Y+G ++V Sbjct: 7 IFLLGLVLGLTAVASNPSPYFAALGLVVVAGMGCGILSGYGGPFLSLVLFLIYLGGMLV- 65 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 +F E R L + IL ++ F + Sbjct: 66 -VFAYSAALAAEPFPETLGSRPVLAFMVVYILGGVILSSLFWEGWFEYAWVPGDEFGDYS 124 >gi|34106424|gb|AAQ62213.1| NADH dehydrogenase subunit 6 [Vidua purpurascens] Length = 159 Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 33/55 (60%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 V + +P Y V L+ A + G + LG FV+++ ++VY+G ++V F++ + + Sbjct: 19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL 73 >gi|74325213|ref|YP_313757.1| NADH dehydrogenase subunit 6 [Cypselurus hiraii] gi|73991766|dbj|BAE43655.1| NADH dehydrogenase subunit 6 [Cypselurus hiraii] Length = 173 Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 +Y I+ V + P + L+ G + G + A+I L++Y+G + Sbjct: 4 LWYTCLLSMILGMASVASNPIPHIAALFLVLVAGVGCGSLAIHGGTYFALILLIIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 ++ F++ + + + FI +A + + Sbjct: 64 LIVFVYSMALASDPYSEEWWVWSAAGVMGTFIFFVAVLAGMFWGGW 109 >gi|187250403|ref|YP_001874825.1| NADH dehydrogenase subunit 6 [Mecistops cataphractus] gi|145315408|gb|ABP62970.1| NADH dehydrogenase subunit 6 [Mecistops cataphractus] Length = 175 Score = 34.2 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ F+L M + S LV Y V SL+FA + +GL + G FV ++ L++Y Sbjct: 1 MGTMLFFLCCLMMV-SVVLVAFGVTIHYGVVSLLFAAMFGSGLLVAGGGSFVPLVVLLIY 59 Query: 63 VGAVIVFFLFIIMMLD 78 +G ++V F F + D Sbjct: 60 LGGMLVVFAFCVGFTD 75 >gi|326917434|ref|XP_003205004.1| PREDICTED: protein PIEZO2-like [Meleagris gallopavo] Length = 2712 Score = 34.2 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 12/128 (9%) Query: 35 LIFAFVNAAGLFLLLGAEFVAMIT--LVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGF 92 L+ A +++ G F +V+Y +V FLF + + + E R + F Sbjct: 644 LVMAMFIKYWIYVCGGMFFFVSFEGRIVMYKIIYMVLFLFCVALYQVHYE-WWRRILKYF 702 Query: 93 LGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGK------VLYTQYAYP- 145 S + + + + F F + + N + ++G L+T+ P Sbjct: 703 WMSVVVYTMLVLIFIYTYQFESFPGLWK-NMTGLDENKLADLGLKRFSVAELFTRIFIPT 761 Query: 146 -LEISGFI 152 ++ + Sbjct: 762 SFLLACIL 769 >gi|119360217|ref|YP_913339.1| NADH dehydrogenase subunit 6 [Tinca tinca] gi|119225021|dbj|BAF41400.1| NADH dehydrogenase subunit 6 [Tinca tinca] Length = 173 Score = 34.2 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M F L + I+ V + P ++ L+ A G+ + G F++++ ++Y Sbjct: 1 MTYFMFLLLVAL-IVGLIAVASNPTPYFAALGLVVAAGVGCGILVGCGGSFLSLVLFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELS 122 +G ++V F + + AEP + S +L L V + + E S Sbjct: 60 LGGMLVVFAYSAAL------AAEPFPEAWGSRSVAGYVLVYLLGVVLMGALFWGDWYEGS 113 Query: 123 RLVFKG 128 ++ G Sbjct: 114 WVIIDG 119 >gi|240266554|ref|YP_002970926.1| NADH dehydrogenase subunit 6 [Leiocephalus personatus] gi|239735228|dbj|BAH70445.1| NADH dehydrogenase subunit 6 [Leiocephalus personatus] Length = 174 Score = 34.2 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 8 FYLFSFMAIISSF-LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F F ++S V +P + L+ + + + LG FV++I ++Y+G + Sbjct: 4 FMFLVFFCLVSGLVGVAANPSPFFGAAGLVVSAAFGCCILVELGVSFVSLILFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAEL 105 +V F + + + G ++ ++ Sbjct: 64 LVVFAYSVALASDPFPETWGSWSVGIYLLGYLSLVMWVW 102 >gi|197311197|ref|YP_002154567.1| NADH dehydrogenase subunit 6 [Paretroplus maculatus] gi|197304567|dbj|BAG69496.1| NADH dehydrogenase subunit 6 [Paretroplus maculatus] Length = 173 Score = 34.2 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 41/111 (36%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 ++F F I+ V + +P ++ L+ G+ + G F++++ ++Y+G + Sbjct: 4 LMFMFLFGLILGLAAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 +V F + + + ++ +C + S Sbjct: 64 LVVFAYSAALAAEPYPEGWGSWPVLGVMLAYVVGAGLASGLCWGGWYGESW 114 >gi|84488760|ref|YP_448853.1| NADH dehydrogenase subunit 6 [Indotestudo forstenii] gi|67005675|gb|AAY62470.1| NADH dehydrogenase subunit 6 [Indotestudo forstenii] Length = 174 Score = 34.2 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 44/106 (41%) Query: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 F LF F + V +P Y VFS++ G+ +++G FV+++ ++Y+G + Sbjct: 4 FMILFGFCFVFGMVGVSCSLSPYYGVFSMVLGAAFGCGMLVVMGGSFVSLVLFLIYLGGM 63 Query: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 +V F + + G ++ + ++ S + Sbjct: 64 LVIFAYSCALAAEPFPGGWDGLVMIIYGLCYLVFVLLFALMDCSWW 109 >gi|84579571|dbj|BAE72158.1| NADH dehydrogenase subunit 6 [Oryzias latipes] gi|253960419|dbj|BAH84904.1| NADH dehydrogenase subunit 6 [Oryzias latipes] Length = 173 Score = 34.2 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 42/109 (38%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ V + +P ++ L+ + G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L ++ ++ + + + S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVVCVSVFFSGGWFEGSW 114 >gi|14039372|gb|AAK53199.1| NADH dehydrogenase subunit 6 [Galaxias depressiceps] Length = 173 Score = 34.2 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + P ++ L+ A G+ + G F++++ ++Y+G ++V F + + Sbjct: 19 VASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPF 78 Query: 82 EVAE-PRKKRGFLGSFFIGILAAELIVCASNF 112 + R G++ ++F+G+L + + Sbjct: 79 PESWGDRSVLGYVLAYFVGVLVIAGLFWGGWY 110 >gi|25057325|ref|NP_739904.1| NADH dehydrogenase subunit 6 [Beryx decadactylus] gi|25005871|dbj|BAC23500.1| NADH dehydrogenase subunit 6 [Beryx decadactylus] Length = 173 Score = 34.2 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 40/96 (41%), Gaps = 1/96 (1%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V + +P ++ L+ G+ + G F++++ ++Y+G ++V F + + Sbjct: 17 IAVASNPSPYFAALGLVVVAGLGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAE 76 Query: 80 DIEVAEP-RKKRGFLGSFFIGILAAELIVCASNFMV 114 + R G++ ++ IG+ + V Sbjct: 77 PYPESWGSRSVVGYVVAYSIGVFLVSGCFWGGWYEV 112 >gi|322784874|gb|EFZ11654.1| hypothetical protein SINV_05379 [Solenopsis invicta] Length = 1144 Score = 34.2 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 12/99 (12%) Query: 100 ILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPL-----EISGFILL 154 I + +C + V +V + Y I+ ++L Sbjct: 967 ITVIPMGICLGELTGVHSPDSHVPPVDDSTSVGA----FHDDYLLTFVLPAIIIAAMLIL 1022 Query: 155 LSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVKV 193 +I + L RR + +S+Q + + V Sbjct: 1023 AGIIACV---LHKRRRSGKMSVSEQDDERQSFRSKGIPV 1058 >gi|218157257|ref|YP_002364414.1| NADH dehydrogenase subunit 6 [Pampus argenteus] gi|164370753|gb|ABY51660.1| NADH dehydrogenase subunit 6 [Pampus sp. LY-2009] Length = 173 Score = 34.2 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 40/104 (38%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++F +I V +P ++ +L+ A G+ + F +++ ++Y+G ++V Sbjct: 6 FVFLLGLVIGLVAVAANPSPYFASLALVIVSGMACGVLIWYRGAFFSLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 F + + + + +G+L + + Sbjct: 66 VFAYSAALAAEPFPESWGNQGVMLNAMVHVGLLMFLYVYLGRKW 109 >gi|145315788|gb|ABP63323.1| NADH dehydrogenase subunit 6 [Sus scrofa] Length = 175 Score = 34.2 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 1/99 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M ++ S + +I + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MTMYIAFILSTIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIY 60 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGIL 101 +G ++V F + + ++ + LG+F G++ Sbjct: 61 LGGMLVVFGYT-TAMATEMYPEVWVSNKTVLGAFVSGLM 98 >gi|84579683|dbj|BAE72262.1| NADH dehydrogenase subunit 6 [Oryzias latipes] Length = 173 Score = 34.2 bits (78), Expect = 9.5, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 41/109 (37%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL + V + +P ++ L+ + G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLVGLVFGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L ++ ++ + + + S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVVCVSVFFSGGWFEGSW 114 >gi|124055202|gb|ABM89810.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon] gi|124055216|gb|ABM89823.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon] gi|124055230|gb|ABM89836.1| NADH dehydrogenase subunit 6 [Chamaeleo chamaeleon] Length = 169 Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%) Query: 21 LVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 V + +P + SL A V A + L + F++++ ++VY+G ++V F++ + M Sbjct: 15 GVASNPSPYFGGVSLALASVFGAVVMAGLSSTFISLVLMLVYLGGMLVVFIYSVAMSSDM 74 Query: 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNF 112 A + F+G L + Sbjct: 75 YPEAWGNRSVFLYVIGFLGYLFCLWWYMGGKW 106 >gi|221052192|ref|XP_002257672.1| hypothetical protein, conserved in P. knowlesi [Plasmodium knowlesi strain H] gi|193807502|emb|CAQ38008.1| hypothetical protein, conserved in P. knowlesi [Plasmodium knowlesi strain H] Length = 375 Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 26/103 (25%) Query: 88 KKRGFLGSFFIGILAAELIVCA------SNFMVFSAEGELSRLVFKGNNVENIGKVLYTQ 141 K R F+ IGIL++ LIV F S V ++ +L+ Sbjct: 273 KYRVFVPLVVIGILSSILIVFIVITEFSGTFSSLPLFAGFSGSVGSFTSI----VLLFIS 328 Query: 142 YAYPLEISGFILLLSMIGA---IVL--------MLRHRRDIKR 173 Y P IGA +VL M R R+ IK+ Sbjct: 329 YLLPFMFVAL-----AIGAYDLLVLYYARKLDKMRRSRKYIKK 366 >gi|37596485|gb|AAQ95003.1| NADH dehydrogenase subunit 6 [Philetairus socius] Length = 159 Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M+ + F ++ V + +P Y V L+ A V G + LG FV+++ ++VY Sbjct: 2 MEFVLF--LGLCFVLGGLAVASNPSPYYGVVGLVVAAVAGGGWLVSLGVSFVSLVLVMVY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASN 111 +G ++V F++ + + E G +G F L + + Sbjct: 60 LGGMLVVFVYSVSLAA--DPYPEAWGDWGVVGYGFGMGLVVMVGLVMGG 106 >gi|5835385|ref|NP_008340.1|ND6_12183 NADH dehydrogenase subunit 6 [Latimeria chalumnae] gi|3122554|sp|O03175|NU6M_LATCH RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|1916829|gb|AAC60329.1| NADH dehydrogenase subunit 6 [Latimeria chalumnae] gi|121308893|dbj|BAF43547.1| NADH dehydrogenase subunit 6 [Latimeria chalumnae] gi|121308907|dbj|BAF43560.1| NADH dehydrogenase subunit 6 [Latimeria chalumnae] Length = 173 Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 7/123 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRN-PIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG 64 ++F M ++ + V P ++ L+F+ V G + G F++++ ++Y+G Sbjct: 2 IYFVFVVLMGLVVGLMAVASNPAPYFAALGLVFSAVVGCGFLVGYGGSFLSLVLFLIYLG 61 Query: 65 AVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRL 124 ++V F + + AEP + S F+ IL + + + + Sbjct: 62 GMLVVFAYSAAL------AAEPYPESWGSWSVFLYILVYLFGFLLVGYYCYGWWYDFYWM 115 Query: 125 VFK 127 Sbjct: 116 SLD 118 >gi|327199724|gb|AEA35991.1| NADH dehydrogenase subunit 6 [Cacatua moluccensis] Length = 172 Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 37/83 (44%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 ++++ V + +P Y V L+ V G + LG F++++ +VY+G ++V Sbjct: 7 FLGISFVLAALAVASNPSPYYGVVGLVLGSVVGCGWLVSLGVSFMSLVLFMVYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGF 92 F++ + + A + Sbjct: 67 FVYSVSLAADPFPQAWGXXXXXW 89 >gi|300508201|dbj|BAJ10939.1| NADH dehydrogenase subunit 6 [Amolops larutensis] Length = 162 Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 32/76 (42%) Query: 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 F ++ +V + +P Y+ L+ + + + G F+ + +VY+G ++V F + Sbjct: 5 FCLLMGLLVVASNPSPYYAALGLVVGAGASCFILVNEGLSFLPLTLFLVYLGGMMVVFAY 64 Query: 73 IIMMLDIDIEVAEPRK 88 ++ A Sbjct: 65 SAALVAEPYPEAWGSH 80 >gi|157736227|ref|YP_001491368.1| NADH dehydrogenase subunit 6 [Trixiphichthys weberi] gi|139000729|dbj|BAF51892.1| NADH dehydrogenase subunit 6 [Trixiphichthys weberi] Length = 173 Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF I+ V + P ++ F L+ G+ G F++++ ++Y+G ++V Sbjct: 7 LFMVGLILGLIAVASNPAPYFAAFGLVMVAGLGCGILAGHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNF 112 F + + + F G+L A ++ S + Sbjct: 67 FAYSAALAAEPFPESWGSWPVMGSTLVFSTGVLLASVLFWGSWY 110 >gi|5835538|ref|NP_007560.1|ND6_13726 NADH dehydrogenase subunit 6 [Oryctolagus cuniculus] gi|6093586|sp|O79438|NU6M_RABIT RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 gi|3293018|emb|CAA04858.1| NADH dehydrogenase subunit 6 [Oryctolagus cuniculus] Length = 174 Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 M + F L S M ++ + +PIY LI + G+ L G F+ ++ ++Y Sbjct: 1 MTYVVF-LLSVMFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMMFLIY 59 Query: 63 VGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCAS 110 +G ++V F + M + LG F +G+L +V Sbjct: 60 LGGMLVVFGYTTAMATEEYPETWGSNV-MILGMFVLGVLMEVGLVVYM 106 >gi|313890212|ref|ZP_07823847.1| cell envelope-like function transcriptional attenuator common domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121573|gb|EFR44677.1| cell envelope-like function transcriptional attenuator common domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 488 Score = 34.2 bits (78), Expect = 9.7, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 6/91 (6%) Query: 29 IYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVG-AVIVFFLFIIMMLDIDIEVAEPR 87 I S +++ ++ F++ F+A L V +G A+ F + ++ +++ Sbjct: 22 INSALFVLYTLLSLTVAFMMYTYNFLAFRHLNVIIGVALSALFFLALFLI-----MSKKA 76 Query: 88 KKRGFLGSFFIGILAAELIVCASNFMVFSAE 118 K LG + I A ++ + + +A+ Sbjct: 77 KWLTMLGMIIVNIALALVLFTFKSTIDLTAQ 107 >gi|25057168|ref|NP_739826.1| NADH dehydrogenase subunit 6 [Oryzias latipes] gi|25005745|dbj|BAC23850.1| NADH dehydrogenase subunit 6 [Oryzias latipes] Length = 173 Score = 34.2 bits (78), Expect = 9.7, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 42/109 (38%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ V + +P ++ L+ + G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L ++ ++ + + + S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVVCVSVFFSGGWFEGSW 114 >gi|239618143|ref|YP_002941465.1| hypothetical protein Kole_1776 [Kosmotoga olearia TBF 19.5.1] gi|239506974|gb|ACR80461.1| hypothetical protein Kole_1776 [Kosmotoga olearia TBF 19.5.1] Length = 231 Score = 34.2 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 +FS + ++++ +V + +V ++ + LLLGA VA+ V V VI+ Sbjct: 7 IFSSLYLLAALAIVGAKTNFKAVIWYGILGFFSSVMMLLLGAPDVALTQFTVGVTLVILV 66 Query: 70 FLFII 74 ++ I Sbjct: 67 YIMAI 71 >gi|221143496|ref|YP_002519509.1| NADH dehydrogenase subunit 6 [Paraluteres prionurus] gi|219806779|dbj|BAH10432.1| NADH dehydrogenase subunit 6 [Paraluteres prionurus] Length = 173 Score = 34.2 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVF 69 LF ++ V + +P ++ L+ G+ L G F++++ ++Y+G ++V Sbjct: 7 LFLVGLVLGLLAVASNPSPYFAALGLVVVSGLGCGVLLGHGGSFLSLVLFLIYLGGMLVV 66 Query: 70 FLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGN 129 F + + AEP + + +L +V A + + + E S + + Sbjct: 67 FAYSSAL------AAEPYPESWGSKPVMVSMLWYVFVVGAVSGLFWGGWYEFSWVSVEEV 120 Query: 130 NV 131 N+ Sbjct: 121 NI 122 >gi|16356965|ref|NP_443526.1| NADH dehydrogenase subunit 6 [Mugil cephalus] gi|16267029|dbj|BAB70181.1| NADH dehydrogenase subunit 6 [Mugil cephalus] Length = 173 Score = 34.2 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 38/93 (40%) Query: 22 VVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 V + +P ++ L+ G+ L G F++++ +++Y+G ++V F + + Sbjct: 19 VASNPSPYFAALGLVVVAGMGCGILLGHGGSFLSLVLVLIYLGGMLVVFAYSAALAAEPY 78 Query: 82 EVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 + S +I + + + + + Sbjct: 79 PEGWGDWPVMGMLSLYIACVLLSVNMFSGGWYW 111 >gi|219560213|gb|ACL27338.1| NADH dehydrogenase subunit 6 [Globicephala melas] gi|294679541|gb|ADF29582.1| NADH dehydrogenase subunit 6 [Globicephala melas] gi|326370262|gb|ADZ56102.1| NADH dehydrogenase subunit 6 [Globicephala melas] Length = 175 Score = 34.2 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 MVM +F + S + +IS V + +PIY LI G+ G F+ ++ + Sbjct: 1 MVMYIIF--IMSTIFVISLVGVSSKPSPIYGGLGLIVGGAMGCGIVFSFGGSFLGLMVFL 58 Query: 61 VYVGAVIVFF 70 +Y+G ++V F Sbjct: 59 IYLGGMLVVF 68 >gi|148239303|ref|YP_001224690.1| subunit of the multisubunit Na+/H+ antiporter [Synechococcus sp. WH 7803] gi|147847842|emb|CAK23393.1| Predicted subunit of the Multisubunit Na+/H+ antiporter [Synechococcus sp. WH 7803] Length = 177 Score = 34.2 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Query: 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAA-GLFLLLGAEFVAMITLVVYVGAVIV 68 + + + ++S +V NP Y L F + A L++LLGA VA+ +V G ++ Sbjct: 22 ITALLPLVSVLMV-CQDNP-YQALMLRGVFGSVATLLYVLLGAPDVALTEAMV--GTLLS 77 Query: 69 FFLFIIMMLDIDIEVAEPRKK 89 L++I + E R+ Sbjct: 78 TTLYVIALRSSMTLRLEDRRS 98 >gi|197935718|ref|YP_002213662.1| NADH dehydrogenase subunit 6 [Chelydra serpentina] gi|78157492|gb|ABB22866.1| NADH dehydrogenase subunit 6 [Chelydra serpentina] gi|118412512|gb|ABK81689.1| NADH dehydrogenase subunit 6 [Chelydra serpentina] Length = 174 Score = 34.2 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 40/95 (42%) Query: 20 FLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDI 79 V +P Y V SL+ + + +++G FV+++ ++Y+G ++V F + ++ Sbjct: 17 VGVSCQPSPYYGVLSLVLGAASGCAVLVIMGGSFVSLVLFLIYLGGMLVLFAYSTALVAE 76 Query: 80 DIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 + + F ++ + + + V Sbjct: 77 SGHIGWNYWESAFYVVIYVLCIVFAGVYYYWAWSV 111 >gi|71657950|ref|YP_272026.1| NADH dehydrogenase subunit 6 [Oreochromis mossambicus] gi|51011734|gb|AAT92278.1| NADH dehydrogenase subunit 6 [Oreochromis mossambicus] Length = 173 Score = 34.2 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++F F ++ V + +P ++ L+ G+ + G F++++ ++Y+G ++V Sbjct: 6 FMFLFGLVLGLAAVRSNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKK-RGFLGSFFIGILAAELIVCASNF 112 F + + G + ++ +G+ AA + + Sbjct: 66 VFAYSAALAAEPYPEGWGSWPVLGVMVAYLVGVCAAAGLFWGGWY 110 >gi|84579655|dbj|BAE72236.1| NADH dehydrogenase subunit 6 [Oryzias latipes] Length = 173 Score = 34.2 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 42/109 (38%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 YL ++ V + +P ++ L+ + G+ + G F+++I ++Y+G ++V Sbjct: 6 YLLLIGLVLGLAAVASNPSPYFAALGLVTVAGMSCGILVGYGGSFLSLILFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA 117 F + + L ++ ++ + + + S Sbjct: 66 VFAYSAALASEPYPEGWGSWPVSTLMLAYVLLVVCVSVFFSGGWFEGSW 114 >gi|223536|prf||0812187A cytochrome b Length = 459 Score = 34.2 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%) Query: 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 ++ S + + + +PIY F LI + + L G F+ ++ ++Y+G ++V Sbjct: 6 FILSLLFLTGCLGLALKPSPIYGGFGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLV 65 Query: 69 FFLFIIMMLDIDIEVAEPRKKRGFLGSF 96 F + M + + RK Sbjct: 66 VFGYTTAMATEEYPMTNIRKSHPLFKII 93 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.319 0.179 0.541 Lambda K H 0.267 0.0548 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,343,991,644 Number of Sequences: 14124377 Number of extensions: 249748081 Number of successful extensions: 1475060 Number of sequences better than 10.0: 10000 Number of HSP's better than 10.0 without gapping: 8675 Number of HSP's successfully gapped in prelim test: 16160 Number of HSP's that attempted gapping in prelim test: 1445048 Number of HSP's gapped (non-prelim): 37324 length of query: 199 length of database: 4,842,793,630 effective HSP length: 132 effective length of query: 67 effective length of database: 2,978,375,866 effective search space: 199551183022 effective search space used: 199551183022 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.9 bits) S2: 78 (34.2 bits)